BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15130
(263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z1B|A Chain A, Crystal Structure Of 5-Aminolevulinic Acid Dehydratase
(Alad) From Mus Musculs
pdb|2Z1B|B Chain B, Crystal Structure Of 5-Aminolevulinic Acid Dehydratase
(Alad) From Mus Musculs
pdb|2Z1B|C Chain C, Crystal Structure Of 5-Aminolevulinic Acid Dehydratase
(Alad) From Mus Musculs
pdb|2Z1B|D Chain D, Crystal Structure Of 5-Aminolevulinic Acid Dehydratase
(Alad) From Mus Musculs
Length = 330
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 36/51 (70%), Gaps = 5/51 (9%)
Query: 158 AQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
A ARD+ +GAD LMVKP LPYLD++ EVK +HP PL VYQ VSG F
Sbjct: 237 AVARDIQEGADMLMVKPGLPYLDMVREVKDKHPELPLAVYQ-----VSGEF 282
>pdb|1PV8|A Chain A, Crystal Structure Of A Low Activity F12l Mutant Of Human
Porphobilinogen Synthase
pdb|1PV8|B Chain B, Crystal Structure Of A Low Activity F12l Mutant Of Human
Porphobilinogen Synthase
Length = 330
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 33/48 (68%), Gaps = 5/48 (10%)
Query: 161 RDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
RDV +GAD LMVKP +PYLDI+ EVK +HP PL VY VSG F
Sbjct: 240 RDVREGADMLMVKPGMPYLDIVREVKDKHPDLPLAVYH-----VSGEF 282
>pdb|1E51|A Chain A, Crystal Structure Of Native Human Erythrocyte 5-
Aminolaevulinic Acid Dehydratase
pdb|1E51|B Chain B, Crystal Structure Of Native Human Erythrocyte 5-
Aminolaevulinic Acid Dehydratase
Length = 330
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 33/48 (68%), Gaps = 5/48 (10%)
Query: 161 RDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
RDV +GAD LMVKP +PYLDI+ EVK +HP PL VY VSG F
Sbjct: 240 RDVREGADMLMVKPGMPYLDIVREVKDKHPDLPLAVYH-----VSGEF 282
>pdb|2Z0I|A Chain A, Crystal Structure Of 5-Aminolevulinic Acid Dehydratase
(Alad) From Mus Musculus
pdb|2Z0I|B Chain B, Crystal Structure Of 5-Aminolevulinic Acid Dehydratase
(Alad) From Mus Musculus
Length = 330
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Query: 158 AQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
A ARD+ +GAD L VKP LPYLD + EVK +HP PL VYQ VSG F
Sbjct: 237 AVARDIQEGADXLXVKPGLPYLDXVREVKDKHPELPLAVYQ-----VSGEF 282
>pdb|1W5Q|A Chain A, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c, D131c, D139c, P132e, K229r)
pdb|1W5Q|B Chain B, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c, D131c, D139c, P132e, K229r)
Length = 337
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 13/91 (14%)
Query: 160 ARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME--- 216
A D+++GAD +MVKP +PYLDI+ VK A P FVYQ VSG + + A++
Sbjct: 247 AADLAEGADMVMVKPGMPYLDIVRRVKDEFRA-PTFVYQ-----VSGEYAMHMGAIQNGW 300
Query: 217 ----MILEKIAEDPSSGSCSNVSYALRYGTE 243
+ILE + +G+ ++Y + E
Sbjct: 301 LAESVILESLTAFKRAGADGILTYFAKQAAE 331
>pdb|1W5P|A Chain A, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c, D131c, D139c, P132e)
pdb|1W5P|B Chain B, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c, D131c, D139c, P132e)
Length = 337
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 13/91 (14%)
Query: 160 ARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME--- 216
A D+++GAD +MVKP +PYLDI+ VK A P FVYQ VSG + + A++
Sbjct: 247 AADLAEGADMVMVKPGMPYLDIVRRVKDEFRA-PTFVYQ-----VSGEYAMHMGAIQNGW 300
Query: 217 ----MILEKIAEDPSSGSCSNVSYALRYGTE 243
+ILE + +G+ ++Y + E
Sbjct: 301 LAESVILESLTAFKRAGADGILTYFAKQAAE 331
>pdb|1W5O|A Chain A, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c, D131c And D139c)
pdb|1W5O|B Chain B, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c, D131c And D139c)
Length = 337
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 13/91 (14%)
Query: 160 ARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME--- 216
A D+++GAD +MVKP +PYLDI+ VK A P FVYQ VSG + + A++
Sbjct: 247 AADLAEGADMVMVKPGMPYLDIVRRVKDEFRA-PTFVYQ-----VSGEYAMHMGAIQNGW 300
Query: 217 ----MILEKIAEDPSSGSCSNVSYALRYGTE 243
+ILE + +G+ ++Y + E
Sbjct: 301 LAESVILESLTAFKRAGADGILTYFAKQAAE 331
>pdb|1W56|A Chain A, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c And D131c)
pdb|1W56|B Chain B, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c And D131c)
Length = 337
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 13/91 (14%)
Query: 160 ARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME--- 216
A D+++GAD +MVKP +PYLDI+ VK A P FVYQ VSG + + A++
Sbjct: 247 AADLAEGADMVMVKPGMPYLDIVRRVKDEFRA-PTFVYQ-----VSGEYAMHMGAIQNGW 300
Query: 217 ----MILEKIAEDPSSGSCSNVSYALRYGTE 243
+ILE + +G+ ++Y + E
Sbjct: 301 LAESVILESLTAFKRAGADGILTYFAKQAAE 331
>pdb|1W5M|A Chain A, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c And D139c)
pdb|1W5M|B Chain B, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations A129c And D139c)
Length = 337
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 13/91 (14%)
Query: 160 ARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME--- 216
A D+++GAD +MVKP +PYLDI+ VK A P FVYQ VSG + + A++
Sbjct: 247 AADLAEGADMVMVKPGMPYLDIVRRVKDEFRA-PTFVYQ-----VSGEYAMHMGAIQNGW 300
Query: 217 ----MILEKIAEDPSSGSCSNVSYALRYGTE 243
+ILE + +G+ ++Y + E
Sbjct: 301 LAESVILESLTAFKRAGADGILTYFAKQAAE 331
>pdb|1W5N|A Chain A, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations D131c And D139c)
pdb|1W5N|B Chain B, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations D131c And D139c)
Length = 337
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 13/91 (14%)
Query: 160 ARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME--- 216
A D+++GAD +MVKP +PYLDI+ VK A P FVYQ VSG + + A++
Sbjct: 247 AADLAEGADMVMVKPGMPYLDIVRRVKDEFRA-PTFVYQ-----VSGEYAMHMGAIQNGW 300
Query: 217 ----MILEKIAEDPSSGSCSNVSYALRYGTE 243
+ILE + +G+ ++Y + E
Sbjct: 301 LAESVILESLTAFKRAGADGILTYFAKQAAE 331
>pdb|1W54|A Chain A, Stepwise Introduction Of A Zinc Binding Site Into
Porphobilinogen Synthase From Pseudomonas Aeruginosa
(mutation D139c)
pdb|1W54|B Chain B, Stepwise Introduction Of A Zinc Binding Site Into
Porphobilinogen Synthase From Pseudomonas Aeruginosa
(mutation D139c)
Length = 337
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 13/91 (14%)
Query: 160 ARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME--- 216
A D+++GAD +MVKP +PYLDI+ VK A P FVYQ VSG + + A++
Sbjct: 247 AADLAEGADMVMVKPGMPYLDIVRRVKDEFRA-PTFVYQ-----VSGEYAMHMGAIQNGW 300
Query: 217 ----MILEKIAEDPSSGSCSNVSYALRYGTE 243
+ILE + +G+ ++Y + E
Sbjct: 301 LAESVILESLTAFKRAGADGILTYFAKQAAE 331
>pdb|2C14|A Chain A, 5-(4-Carboxy-2-Oxo-Butylamino)-4-Oxo-Pentanoic Acid Acid
Bound To Porphobilinogen Synthase From Pseudomonas
Aeruginosa
pdb|2C14|B Chain B, 5-(4-Carboxy-2-Oxo-Butylamino)-4-Oxo-Pentanoic Acid Acid
Bound To Porphobilinogen Synthase From Pseudomonas
Aeruginosa
pdb|2C16|A Chain A, 5-(4-Carboxy-2-Oxo-Butane-1-Sulfinyl)-4-Oxo-Pentanoic Acid
Acid Bound To Porphobilinogen Synthase From Pseudomonas
Aeruginosa
pdb|2C16|B Chain B, 5-(4-Carboxy-2-Oxo-Butane-1-Sulfinyl)-4-Oxo-Pentanoic Acid
Acid Bound To Porphobilinogen Synthase From Pseudomonas
Aeruginosa
pdb|2C19|A Chain A, 5-(4-Carboxy-2-Oxo-Butylsulfanyl)-4-Oxo-Pentanoic Acid
Acid Bound To Porphobilinogen Synthase From Pseudomonas
Aeruginosa
pdb|2C19|B Chain B, 5-(4-Carboxy-2-Oxo-Butylsulfanyl)-4-Oxo-Pentanoic Acid
Acid Bound To Porphobilinogen Synthase From Pseudomonas
Aeruginosa
Length = 337
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 13/91 (14%)
Query: 160 ARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME--- 216
A D+++GAD +MVKP +PYLDI+ VK A P FVYQ VSG + + A++
Sbjct: 247 AADLAEGADMVMVKPGMPYLDIVRRVKDEFRA-PTFVYQ-----VSGEYAMHMGAIQNGW 300
Query: 217 ----MILEKIAEDPSSGSCSNVSYALRYGTE 243
+ILE + +G+ ++Y + E
Sbjct: 301 LAESVILESLTAFKRAGADGILTYFAKQAAE 331
>pdb|1B4K|A Chain A, High Resolution Crystal Structure Of A Mg2-Dependent
5-Aminolevulinic Acid Dehydratase
pdb|1B4K|B Chain B, High Resolution Crystal Structure Of A Mg2-Dependent
5-Aminolevulinic Acid Dehydratase
pdb|2WOQ|A Chain A, Porphobilinogen Synthase (Hemb) In Complex With
5-Acetamido- 4-Oxohexanoic Acid (Alaremycin 2)
Length = 337
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 13/91 (14%)
Query: 160 ARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME--- 216
A D+++GAD +MVKP +PYLDI+ VK A P FVYQ VSG + + A++
Sbjct: 247 AADLAEGADMVMVKPGMPYLDIVRRVKDEFRA-PTFVYQ-----VSGEYAMHMGAIQNGW 300
Query: 217 ----MILEKIAEDPSSGSCSNVSYALRYGTE 243
+ILE + +G+ ++Y + E
Sbjct: 301 LAESVILESLTAFKRAGADGILTYFAKQAAE 331
>pdb|1GZG|A Chain A, Complex Of A Mg2-Dependent Porphobilinogen Synthase From
Pseudomonas Aeruginosa (Mutant D139n) With
5-Fluorolevulinic Acid
pdb|1GZG|B Chain B, Complex Of A Mg2-Dependent Porphobilinogen Synthase From
Pseudomonas Aeruginosa (Mutant D139n) With
5-Fluorolevulinic Acid
Length = 337
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 13/91 (14%)
Query: 160 ARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME--- 216
A D+++GAD +MVKP +PYLDI+ VK A P FVYQ VSG + + A++
Sbjct: 247 AADLAEGADMVMVKPGMPYLDIVRRVKDEFRA-PTFVYQ-----VSGEYAMHMGAIQNGW 300
Query: 217 ----MILEKIAEDPSSGSCSNVSYALRYGTE 243
+ILE + +G+ ++Y + E
Sbjct: 301 LAESVILESLTAFKRAGADGILTYFAKQAAE 331
>pdb|2C13|A Chain A, 5-Hydroxy-Levulinic Acid Bound To Porphobilinogen Synthase
From Pseudomonas Aeruginosa
pdb|2C13|B Chain B, 5-Hydroxy-Levulinic Acid Bound To Porphobilinogen Synthase
From Pseudomonas Aeruginosa
Length = 337
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 13/91 (14%)
Query: 160 ARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME--- 216
A D+++GAD +MV P +PYLDI+ VK A P FVYQ VSG + + A++
Sbjct: 247 AADLAEGADMVMVXPGMPYLDIVRRVKDEFRA-PTFVYQ-----VSGEYAMHMGAIQNGW 300
Query: 217 ----MILEKIAEDPSSGSCSNVSYALRYGTE 243
+ILE + +G+ ++Y + E
Sbjct: 301 LAESVILESLTAFKRAGADGILTYFAKQAAE 331
>pdb|2C15|A Chain A, 5-(4-Carboxy-2-Oxo-Butoxy)-4-Oxo-Pentanoic Acid Acid Bound
To Porphobilinogen Synthase From Pseudomonas Aeruginosa
pdb|2C15|B Chain B, 5-(4-Carboxy-2-Oxo-Butoxy)-4-Oxo-Pentanoic Acid Acid Bound
To Porphobilinogen Synthase From Pseudomonas Aeruginosa
pdb|2C18|A Chain A, 5-(4-Carboxy-2-Oxo-Butane-1-Sulfonyl)-4-Oxo-Pentanoic Acid
Bound To Porphobilinogen Synthase From Pseudomonas
Aeruginosa
pdb|2C18|B Chain B, 5-(4-Carboxy-2-Oxo-Butane-1-Sulfonyl)-4-Oxo-Pentanoic Acid
Bound To Porphobilinogen Synthase From Pseudomonas
Aeruginosa
Length = 337
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 13/91 (14%)
Query: 160 ARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME--- 216
A D+++GAD +MV P +PYLDI+ VK A P FVYQ VSG + + A++
Sbjct: 247 AADLAEGADMVMVXPGMPYLDIVRRVKDEFRA-PTFVYQ-----VSGEYAMHMGAIQNGW 300
Query: 217 ----MILEKIAEDPSSGSCSNVSYALRYGTE 243
+ILE + +G+ ++Y + E
Sbjct: 301 LAESVILESLTAFKRAGADGILTYFAKQAAE 331
>pdb|1I8J|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1I8J|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
Length = 323
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
D +QGAD LMVKPA YLDI+ E++ R P+ YQ VSG +
Sbjct: 235 DEAQGADCLMVKPAGAYLDIVRELRER-TELPIGAYQ-----VSGEY 275
>pdb|1B4E|A Chain A, X-Ray Structure Of 5-Aminolevulinic Acid Dehydratase
Complexed With The Inhibitor Levulinic Acid
Length = 323
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
D +QGAD LMVKPA YLDI+ E++ R P+ YQ VSG +
Sbjct: 235 DEAQGADCLMVKPAGAYLDIVRELRER-TELPIGAYQ-----VSGEY 275
>pdb|1L6S|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1L6S|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1L6Y|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4-Oxosebacic Acid
pdb|1L6Y|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4-Oxosebacic Acid
Length = 323
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
D +QGAD LMVKPA YLDI+ E++ R P+ YQ VSG +
Sbjct: 235 DEAQGADCLMVKPAGAYLDIVRELRER-TELPIGAYQ-----VSGEY 275
>pdb|2ANR|A Chain A, Crystal Structure (Ii) Of Nova-1 Kh1KH2 DOMAIN TANDEM WITH
25NT RNA Hairpin
Length = 178
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAEDP 226
Q R +TVSG E N KA+E+I++KI EDP
Sbjct: 149 QNRVVTVSGEPEQNRKAVELIIQKIQEDP 177
>pdb|2ANN|A Chain A, Crystal Structure (I) Of Nova-1 Kh1KH2 DOMAIN TANDEM WITH
25 NT RNA Hairpin
Length = 178
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAEDP 226
Q R +TVSG E N KA+E+I++KI EDP
Sbjct: 149 QNRVVTVSGEPEQNRKAVELIIQKIQEDP 177
>pdb|3OBK|A Chain A, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|B Chain B, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|C Chain C, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|D Chain D, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|E Chain E, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|F Chain F, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|G Chain G, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
pdb|3OBK|H Chain H, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49
In Complex With The Reaction Product Porphobilinogen
Length = 356
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 166 GADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME 216
GAD LMVKP LPYLD++++++ + P+ Y VSG + + A E
Sbjct: 260 GADMLMVKPGLPYLDVLAKIREKS-KLPMVAYH-----VSGEYAMLKAAAE 304
>pdb|1W1Z|A Chain A, Structure Of The Plant Like 5-Amino Laevulinic Acid
Dehydratase From Chlorobium Vibrioforme
pdb|1W1Z|B Chain B, Structure Of The Plant Like 5-Amino Laevulinic Acid
Dehydratase From Chlorobium Vibrioforme
pdb|2C1H|A Chain A, The X-Ray Structure Of Chlorobium Vibrioforme 5-
Aminolaevulinic Acid Dehydratase Complexed With A Diacid
Inhibitor
pdb|2C1H|B Chain B, The X-Ray Structure Of Chlorobium Vibrioforme 5-
Aminolaevulinic Acid Dehydratase Complexed With A Diacid
Inhibitor
Length = 328
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
D+ +GAD +MVKP L YLDI+ K R P+ +Y VSG +
Sbjct: 242 DIVEGADIVMVKPGLAYLDIVWRTKERFDV-PVAIYH-----VSGEY 282
>pdb|1AW5|A Chain A, 5-Aminolevulinate Dehydratase From Saccharomyces
Cerevisiae
Length = 340
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 158 AQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME 216
A RD S+GAD ++VKP+ YLDI+ + P+ Y VSG + A E
Sbjct: 248 ALERDXSEGADGIIVKPSTFYLDIVRDASEICKDLPICAYH-----VSGEYAXLHAAAE 301
>pdb|1YLV|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With Laevulinic Acid
Length = 342
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 158 AQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME 216
A RD+S+GAD ++VKP+ YLDI+ + P+ Y VSG + A E
Sbjct: 248 ALERDMSEGADGIIVKPSTFYLDIMRDASEICKDLPICAYH-----VSGEYAMLHAAAE 301
>pdb|1EB3|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratase 4,7-Dioxosebacic
Acid Complex
pdb|1GJP|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With 4-Oxosebacic Acid
Length = 340
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 158 AQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME 216
A RD+S+GAD ++VKP+ YLDI+ + P+ Y VSG + A E
Sbjct: 248 ALERDMSEGADGIIVKPSTFYLDIMRDASEICKDLPICAYH-----VSGEYAMLHAAAE 301
>pdb|1QNV|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratase Lead (Pb) Complex
pdb|1QML|A Chain A, Hg Complex Of Yeast 5-Aminolaevulinic Acid Dehydratase
pdb|1H7P|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With 4-Keto-5-Amino-Hexanoic (Kah) At 1.64 A
Resolution
pdb|1H7R|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With Succinylacetone At 2.0 A Resolution.
pdb|1H7N|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With Laevulinic Acid At 1.6 A Resolution
pdb|1OHL|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratase Putative Cyclic
Reaction Intermediate Complex
pdb|1W31|A Chain A, Yeast 5-Aminolaevulinic Acid Dehydratase
5-Hydroxylaevulinic Acid Complex
Length = 342
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 158 AQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME 216
A RD+S+GAD ++VKP+ YLDI+ + P+ Y VSG + A E
Sbjct: 248 ALERDMSEGADGIIVKPSTFYLDIMRDASEICKDLPICAYH-----VSGEYAMLHAAAE 301
>pdb|1H7O|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With 5-Aminolaevulinic Acid At 1.7 A
Resolution
Length = 341
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 158 AQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME 216
A RD+S+GAD ++VKP+ YLDI+ + P+ Y VSG + A E
Sbjct: 248 ALERDMSEGADGIIVKPSTFYLDIMRDASEICKDLPICAYH-----VSGEYAMLHAAAE 301
>pdb|3IFA|A Chain A, Human Muscle Fructose-1,6-Bisphosphatase E69q Mutant In
Complex With Amp
pdb|3IFA|B Chain B, Human Muscle Fructose-1,6-Bisphosphatase E69q Mutant In
Complex With Amp
pdb|3IFA|C Chain C, Human Muscle Fructose-1,6-Bisphosphatase E69q Mutant In
Complex With Amp
pdb|3IFA|D Chain D, Human Muscle Fructose-1,6-Bisphosphatase E69q Mutant In
Complex With Amp
pdb|3IFC|A Chain A, Human Muscle Fructose-1,6-Bisphosphatase E69q Mutant In
Complex With Amp And Alpha Fructose-6-Phosphate
pdb|3IFC|B Chain B, Human Muscle Fructose-1,6-Bisphosphatase E69q Mutant In
Complex With Amp And Alpha Fructose-6-Phosphate
pdb|3IFC|C Chain C, Human Muscle Fructose-1,6-Bisphosphatase E69q Mutant In
Complex With Amp And Alpha Fructose-6-Phosphate
pdb|3IFC|D Chain D, Human Muscle Fructose-1,6-Bisphosphatase E69q Mutant In
Complex With Amp And Alpha Fructose-6-Phosphate
Length = 338
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 88 SRYIICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQLNFLKHVQT 147
+Y++C D S I I +KT+ + K LQC + ++ +
Sbjct: 111 GKYVVCFDPLDGSSNIDCLASIGTIFAIYRKTSEDEPSEKDALQCGRNIVAAGY------ 164
Query: 148 NEFHCIARCIAQARDVSQGADFLMVKPAL 176
+ A +A + QG D M+ PAL
Sbjct: 165 -ALYGSATLVALS--TGQGVDLFMLDPAL 190
>pdb|3LWZ|A Chain A, 1.65 Angstrom Resolution Crystal Structure Of Type Ii 3-
Dehydroquinate Dehydratase (Aroq) From Yersinia Pestis
pdb|3LWZ|B Chain B, 1.65 Angstrom Resolution Crystal Structure Of Type Ii 3-
Dehydroquinate Dehydratase (Aroq) From Yersinia Pestis
pdb|3LWZ|C Chain C, 1.65 Angstrom Resolution Crystal Structure Of Type Ii 3-
Dehydroquinate Dehydratase (Aroq) From Yersinia Pestis
pdb|3LWZ|D Chain D, 1.65 Angstrom Resolution Crystal Structure Of Type Ii 3-
Dehydroquinate Dehydratase (Aroq) From Yersinia Pestis
Length = 153
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 21/67 (31%)
Query: 142 LKHVQTNEFHCIARCIAQARDVSQGADFLMVKPA-----------------LPYLDI-IS 183
L H+Q+N H + I QAR DF+++ PA +P+++I +S
Sbjct: 52 LSHLQSNAEHALIDSIHQARG---NTDFILINPAAFTHTSVALRDALLGVQIPFIEIHLS 108
Query: 184 EVKSRHP 190
V +R P
Sbjct: 109 NVHAREP 115
>pdb|2XBG|A Chain A, Crystal Structure Of Ycf48 From Thermosynechococcus
Elongatus
Length = 327
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 242 TEGWGELLHRFTRTSVGFLNF 262
+E WGELL R SVGFL+
Sbjct: 235 SENWGELLSPLRRNSVGFLDL 255
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/89 (19%), Positives = 40/89 (44%), Gaps = 14/89 (15%)
Query: 122 LSDTHKRLLQCSKTLLQLNFLKHVQTNEFHCIARCIAQARDVSQGADFLMV--------- 172
+ DT+++++ C K++ L +++F + R +S+G F++V
Sbjct: 36 VEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRL-----SISKGHAFILVYSITSRQSL 90
Query: 173 KPALPYLDIISEVKSRHPAYPLFVYQERC 201
+ P + I E+K + P+ + +C
Sbjct: 91 EELKPIYEQICEIKGDVESIPIMLVGNKC 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.133 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,510,139
Number of Sequences: 62578
Number of extensions: 221462
Number of successful extensions: 604
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 34
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)