BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15130
(263 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P06214|HEM2_RAT Delta-aminolevulinic acid dehydratase OS=Rattus norvegicus GN=Alad
PE=1 SV=1
Length = 330
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 36/51 (70%), Gaps = 5/51 (9%)
Query: 158 AQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
A ARD+ +GAD LMVKP LPYLD++ EVK +HP PL VYQ VSG F
Sbjct: 237 AVARDIQEGADILMVKPGLPYLDMVQEVKDKHPELPLAVYQ-----VSGEF 282
>sp|P10518|HEM2_MOUSE Delta-aminolevulinic acid dehydratase OS=Mus musculus GN=Alad PE=1
SV=1
Length = 330
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 36/51 (70%), Gaps = 5/51 (9%)
Query: 158 AQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
A ARD+ +GAD LMVKP LPYLD++ EVK +HP PL VYQ VSG F
Sbjct: 237 AVARDIQEGADMLMVKPGLPYLDMVREVKDKHPELPLAVYQ-----VSGEF 282
>sp|Q5R971|HEM2_PONAB Delta-aminolevulinic acid dehydratase OS=Pongo abelii GN=ALAD PE=2
SV=2
Length = 330
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 33/48 (68%), Gaps = 5/48 (10%)
Query: 161 RDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
RDV +GAD LMVKP +PYLDI+ EVK +HP PL VY VSG F
Sbjct: 240 RDVREGADMLMVKPGMPYLDIVREVKDKHPDLPLAVYH-----VSGEF 282
>sp|P13716|HEM2_HUMAN Delta-aminolevulinic acid dehydratase OS=Homo sapiens GN=ALAD PE=1
SV=1
Length = 330
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 33/48 (68%), Gaps = 5/48 (10%)
Query: 161 RDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
RDV +GAD LMVKP +PYLDI+ EVK +HP PL VY VSG F
Sbjct: 240 RDVREGADMLMVKPGMPYLDIVREVKDKHPDLPLAVYH-----VSGEF 282
>sp|Q60HH9|HEM2_MACFA Delta-aminolevulinic acid dehydratase OS=Macaca fascicularis
GN=ALAD PE=2 SV=2
Length = 330
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 33/48 (68%), Gaps = 5/48 (10%)
Query: 161 RDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
RDV +GAD LMVKP +PYLDI+ EVK +HP PL VY VSG F
Sbjct: 240 RDVREGADVLMVKPGMPYLDIVREVKDKHPDLPLAVYH-----VSGEF 282
>sp|Q58DK5|HEM2_BOVIN Delta-aminolevulinic acid dehydratase OS=Bos taurus GN=ALAD PE=2
SV=1
Length = 329
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 33/48 (68%), Gaps = 5/48 (10%)
Query: 161 RDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
RDV +GAD LMVKP PYLDI+ EVK++HP PL VY VSG F
Sbjct: 240 RDVREGADLLMVKPGTPYLDIVREVKNKHPELPLAVYH-----VSGEF 282
>sp|P51513|NOVA1_HUMAN RNA-binding protein Nova-1 OS=Homo sapiens GN=NOVA1 PE=1 SV=1
Length = 510
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAEDPSSGSCSNVSYA 237
QER +TVSG E N KA+E+I++KI EDP SGSC N+SYA
Sbjct: 220 QERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYA 259
>sp|Q9JKN6|NOVA1_MOUSE RNA-binding protein Nova-1 OS=Mus musculus GN=Nova1 PE=1 SV=2
Length = 507
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAEDPSSGSCSNVSYA 237
QER +TVSG E N KA+E+I++KI EDP SGSC N+SYA
Sbjct: 217 QERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYA 256
>sp|Q2PFW9|NOVA1_MACFA RNA-binding protein Nova-1 OS=Macaca fascicularis GN=NOVA1 PE=2
SV=1
Length = 483
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAEDPSSGSCSNVSYA 237
QER +TVSG E N KA+E+I++KI EDP SGSC N+SYA
Sbjct: 193 QERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYA 232
>sp|Q80WA4|NOVA1_RAT RNA-binding protein Nova-1 (Fragment) OS=Rattus norvegicus GN=Nova1
PE=2 SV=1
Length = 474
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAEDPSSGSCSNVSYA 237
QER +TVSG E N KA+E+I++KI EDP SGSC N+SYA
Sbjct: 192 QERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYA 231
>sp|P42504|HEM2_RHOCA Delta-aminolevulinic acid dehydratase OS=Rhodobacter capsulatus
GN=hemB PE=1 SV=1
Length = 332
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 6/49 (12%)
Query: 160 ARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
ARD+++GAD +MVKP +PYLDI+ +VK P + YQ VSG +
Sbjct: 243 ARDIAEGADMVMVKPGMPYLDIVRQVKDAF-GMPTYAYQ-----VSGEY 285
>sp|Q59643|HEM2_PSEAE Delta-aminolevulinic acid dehydratase OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=hemB PE=1 SV=1
Length = 337
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 6/49 (12%)
Query: 160 ARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
A D+++GAD +MVKP +PYLDI+ VK A P FVYQ VSG +
Sbjct: 247 AADLAEGADMVMVKPGMPYLDIVRRVKDEFRA-PTFVYQ-----VSGEY 289
>sp|P45622|HEM2_BRAJA Delta-aminolevulinic acid dehydratase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=hemB PE=1 SV=1
Length = 353
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 6/47 (12%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
D+S+GAD +MVKP +PYLD++ VK A P F YQ VSG +
Sbjct: 264 DISEGADMVMVKPGMPYLDVVRRVKDTF-AMPTFAYQ-----VSGEY 304
>sp|Q55E06|HEM2_DICDI Delta-aminolevulinic acid dehydratase OS=Dictyostelium discoideum
GN=alad PE=3 SV=2
Length = 333
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 6/51 (11%)
Query: 158 AQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
A RD ++GADF+MVKPA PY+DII EVK H P+ YQ VSG +
Sbjct: 242 AALRDEAEGADFIMVKPAGPYMDIIREVKD-HVKVPVCCYQ-----VSGEY 286
>sp|P78974|HEM2_SCHPO Delta-aminolevulinic acid dehydratase OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=hem2 PE=2 SV=2
Length = 329
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 68/193 (35%), Gaps = 43/193 (22%)
Query: 37 LPAFLWWVQTCAMQRAKHLHCTL-HVKSNLTNAN----VFHVSENFCTDTQLVMAYSRYI 91
P + C + H HC L + + NA + VS N+
Sbjct: 112 FPELVVACDVCLCEYTDHGHCGLLYEDGTINNAKSVERIAEVSGNY-------------- 157
Query: 92 ICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQLNFLKHVQTN--- 148
AL A P +K I+QK L +HK + F +
Sbjct: 158 ---ALAGAQIISPSDCMDGRVKAIKQKLVELELSHKVCVISYSAKFASGFFGPFRAAANG 214
Query: 149 ----------EFHCIARCIAQA---RDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLF 195
+ C AR +A+ RDV +GAD +MVKP PYLDI++ P+
Sbjct: 215 APKFGDRSCYQLPCNARGLAKRAILRDVREGADGIMVKPGTPYLDILAMASKLADDLPIA 274
Query: 196 VYQERCITVSGHF 208
YQ VSG F
Sbjct: 275 TYQ-----VSGEF 282
>sp|Q9UNW9|NOVA2_HUMAN RNA-binding protein Nova-2 OS=Homo sapiens GN=NOVA2 PE=1 SV=1
Length = 492
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAEDPSSGSCSNVSYA 237
QER +TVSG E KA+ I++K+ EDP S SC N+SYA
Sbjct: 176 QERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYA 215
>sp|Q9K8G2|HEM2_BACHD Delta-aminolevulinic acid dehydratase OS=Bacillus halodurans
(strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153
/ C-125) GN=hemB PE=3 SV=1
Length = 328
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 7/54 (12%)
Query: 156 CIAQAR-DVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
+ +AR DV +GADFL+VKPAL YLDII EVK+ P+ Y VSG +
Sbjct: 232 ALREARSDVEEGADFLIVKPALSYLDIIREVKN-ETGLPVVAY-----NVSGEY 279
>sp|O28305|HEM2_ARCFU Delta-aminolevulinic acid dehydratase OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=hemB PE=3 SV=1
Length = 322
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
DV +GAD +MVKPALPYLDII V+ R PL Y VSG +
Sbjct: 237 DVKEGADIIMVKPALPYLDIIRMVRERF-DLPLAAY-----NVSGEY 277
>sp|P56074|HEM2_HELPY Delta-aminolevulinic acid dehydratase OS=Helicobacter pylori
(strain ATCC 700392 / 26695) GN=hemB PE=3 SV=1
Length = 323
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 6/48 (12%)
Query: 161 RDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
D QGAD LMVKPAL YLDI+ E++ H PL +Y VSG +
Sbjct: 234 EDEKQGADILMVKPALAYLDIVKEIRD-HTLLPLALY-----NVSGEY 275
>sp|Q9ZMR8|HEM2_HELPJ Delta-aminolevulinic acid dehydratase OS=Helicobacter pylori
(strain J99) GN=hemB PE=3 SV=1
Length = 323
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
D QGAD LMVKPAL YLDI+ E++ H PL +Y VSG +
Sbjct: 235 DEKQGADILMVKPALAYLDIVKEIRD-HTLLPLALY-----NVSGEY 275
>sp|Q9SFH9|HEM2_ARATH Delta-aminolevulinic acid dehydratase, chloroplastic OS=Arabidopsis
thaliana GN=HEMB PE=1 SV=1
Length = 430
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 143 KHVQTNEFHCIARCIAQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCI 202
K Q N + I D ++GAD L+VKP LPYLDII ++ + P P+ YQ
Sbjct: 321 KTYQMNPANYREALIEAREDEAEGADILLVKPGLPYLDIIRLLRDKSP-LPIAAYQ---- 375
Query: 203 TVSGHF 208
VSG +
Sbjct: 376 -VSGEY 380
>sp|P30124|HEM2_PEA Delta-aminolevulinic acid dehydratase, chloroplastic (Fragment)
OS=Pisum sativum GN=HEMB PE=1 SV=1
Length = 398
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 8/62 (12%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFE--ANEKAMEMIL 219
D S+GAD L+VKP LPYLDII ++ P P+ YQ VSG + A++MI
Sbjct: 308 DESEGADILLVKPGLPYLDIIRLLRDNSP-LPIAAYQ-----VSGEYSMIKAGGALKMID 361
Query: 220 EK 221
E+
Sbjct: 362 EE 363
>sp|O26839|HEM2_METTH Delta-aminolevulinic acid dehydratase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=hemB PE=3 SV=1
Length = 326
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 6/47 (12%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
D+ +GAD LMVKPAL YLD+I +V+ R + PL Y VSG +
Sbjct: 242 DLREGADILMVKPALAYLDVIGKVRERF-SVPLAAY-----NVSGEY 282
>sp|P43210|HEM2_SOYBN Delta-aminolevulinic acid dehydratase, chloroplastic OS=Glycine max
GN=HEMB PE=2 SV=1
Length = 412
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 8/62 (12%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFE--ANEKAMEMIL 219
D S+GAD L+VKP LPYLDII ++ P P+ YQ VSG + A++MI
Sbjct: 322 DESEGADILLVKPGLPYLDIIRLLRDNSP-LPIAAYQ-----VSGEYAMIKAAGALKMID 375
Query: 220 EK 221
E+
Sbjct: 376 EE 377
>sp|Q43058|HEM2_PHYPA Delta-aminolevulinic acid dehydratase, chloroplastic
OS=Physcomitrella patens subsp. patens GN=HEMB PE=2 SV=1
Length = 430
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 143 KHVQTNEFHCIARCIAQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCI 202
K Q N + I D ++GAD LMVKPA+PYLD+I ++ + A P+ YQ
Sbjct: 322 KTYQMNPANYREALIETRMDEAEGADILMVKPAMPYLDVIRLLRD-NTALPISAYQ---- 376
Query: 203 TVSGHF 208
VSG +
Sbjct: 377 -VSGEY 381
>sp|Q60178|HEM2_METJA Delta-aminolevulinic acid dehydratase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=hemB PE=3 SV=1
Length = 335
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 160 ARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKA 214
A D+ +GAD ++VKPALPYLDII K R P+ Y C VSG + E A
Sbjct: 244 ALDIEEGADLILVKPALPYLDIIRMAKDRFDV-PIGGY---C--VSGEYAMVEAA 292
>sp|Q42836|HEM2_HORVU Delta-aminolevulinic acid dehydratase, chloroplastic OS=Hordeum
vulgare GN=HEMB PE=2 SV=1
Length = 428
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 143 KHVQTNEFHCIARCIAQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCI 202
K Q N + + A D ++GAD L+VKP LPYLDII + + A P+ YQ
Sbjct: 317 KTYQMNPANYREALLETAADEAEGADILLVKPGLPYLDII-RLSRDNSALPIAAYQ---- 371
Query: 203 TVSGHFE--ANEKAMEMILEK 221
VSG + A+ MI E+
Sbjct: 372 -VSGEYSMIKAGGALNMIDEE 391
>sp|P54919|HEM2_STRCO Delta-aminolevulinic acid dehydratase OS=Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145) GN=hemB PE=3 SV=2
Length = 330
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 160 ARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME 216
A D+ +GAD +MVKPA PYLDI+++V + P+ YQ +SG + E A E
Sbjct: 242 ALDLEEGADMVMVKPAGPYLDILAKV-AEASDVPVAAYQ-----ISGEYSMIEAAAE 292
>sp|Q02250|HEM2_METSC Delta-aminolevulinic acid dehydratase OS=Methanothermus sociabilis
GN=hemB PE=3 SV=1
Length = 320
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVKS 187
D+ +GAD +MVKPALPYLDII VK
Sbjct: 236 DIDEGADIVMVKPALPYLDIIRLVKD 261
>sp|P30950|HEM2_BACSU Delta-aminolevulinic acid dehydratase OS=Bacillus subtilis (strain
168) GN=hemB PE=3 SV=1
Length = 324
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 6/47 (12%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
DV +GADFL+VKP+L Y+DI+ +VK+ PL Y VSG +
Sbjct: 237 DVEEGADFLIVKPSLSYMDIMRDVKNEF-TLPLVAY-----NVSGEY 277
>sp|Q5Z8V9|HEM2_ORYSJ Delta-aminolevulinic acid dehydratase, chloroplastic OS=Oryza
sativa subsp. japonica GN=HEMB PE=2 SV=1
Length = 426
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 143 KHVQTNEFHCIARCIAQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCI 202
K Q N + + A D ++GAD L+VKP LPYLD+I ++ A P+ YQ
Sbjct: 316 KTYQMNPANYREALLETAADEAEGADILLVKPGLPYLDVIRLLRDNS-ALPIAAYQ---- 370
Query: 203 TVSGHFE--ANEKAMEMILEK 221
VSG + A+ MI E+
Sbjct: 371 -VSGEYSMIKAGGALNMIDEE 390
>sp|P24493|HEM2_SPIOL Delta-aminolevulinic acid dehydratase, chloroplastic OS=Spinacia
oleracea GN=HEMB PE=1 SV=2
Length = 433
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 143 KHVQTNEFHCIARCIAQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCI 202
K Q N + I D S+GAD L+VKP LPYLDII ++ + P+ YQ
Sbjct: 324 KTYQMNPANYREALIETQEDESEGADILLVKPGLPYLDIIRLLRD-NSDLPIAAYQ---- 378
Query: 203 TVSGHF 208
VSG +
Sbjct: 379 -VSGEY 383
>sp|P0ACB3|HEM2_SHIFL Delta-aminolevulinic acid dehydratase OS=Shigella flexneri GN=hemB
PE=3 SV=2
Length = 324
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
D +QGAD LMVKPA YLDI+ E++ R P+ YQ VSG +
Sbjct: 236 DEAQGADCLMVKPAGAYLDIVRELRER-TELPIGAYQ-----VSGEY 276
>sp|P0ACB2|HEM2_ECOLI Delta-aminolevulinic acid dehydratase OS=Escherichia coli (strain
K12) GN=hemB PE=1 SV=2
Length = 324
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
D +QGAD LMVKPA YLDI+ E++ R P+ YQ VSG +
Sbjct: 236 DEAQGADCLMVKPAGAYLDIVRELRER-TELPIGAYQ-----VSGEY 276
>sp|O67876|HEM2_AQUAE Delta-aminolevulinic acid dehydratase OS=Aquifex aeolicus (strain
VF5) GN=hemB PE=3 SV=1
Length = 330
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 22/26 (84%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVKS 187
DV +GAD +MVKPAL YLDII++VK
Sbjct: 240 DVEEGADVVMVKPALAYLDIIAKVKE 265
>sp|Q42682|HEM2_CHLRE Delta-aminolevulinic acid dehydratase, chloroplastic
OS=Chlamydomonas reinhardtii GN=HEMB PE=2 SV=1
Length = 390
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 7/54 (12%)
Query: 156 CIAQAR-DVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
I +A+ D ++GAD +MVKP +PYLD++ ++ P P+ VY VSG +
Sbjct: 294 AIREAKADEAEGADIMMVKPGMPYLDVVRLLRETSP-LPVAVYH-----VSGEY 341
>sp|P45623|HEM2_SELMA Delta-aminolevulinic acid dehydratase, chloroplastic OS=Selaginella
martensii GN=HEMB PE=3 SV=1
Length = 417
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
D S+GAD LMVKPA+PYL +I ++ A P+ YQ VSG +
Sbjct: 328 DESEGADILMVKPAMPYLHVIRLLRDTS-ALPISAYQ-----VSGEY 368
>sp|P0C1R9|HEM2_STAAU Delta-aminolevulinic acid dehydratase OS=Staphylococcus aureus
GN=hemB PE=3 SV=1
Length = 323
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME 216
D+ +G D ++VKPAL YLDI+ +VK+ H P+ Y VSG + + A +
Sbjct: 237 DLKEGCDMMIVKPALSYLDIVRDVKN-HTNVPVVAY-----NVSGEYSMTKAAAQ 285
>sp|Q9Z7G1|HEM2_CHLPN Delta-aminolevulinic acid dehydratase OS=Chlamydia pneumoniae
GN=hemB PE=3 SV=1
Length = 332
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 143 KHVQTNEFHCIARCIAQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCI 202
K Q N + + + + D +GAD LMVKPA YLD+I ++ ++ PL YQ
Sbjct: 222 KQYQMNPKNVLEALLESSLDEEEGADILMVKPAGLYLDVIYRIR-QNTCLPLAAYQ---- 276
Query: 203 TVSGHF 208
VSG +
Sbjct: 277 -VSGEY 281
>sp|P64335|HEM2_STAAW Delta-aminolevulinic acid dehydratase OS=Staphylococcus aureus
(strain MW2) GN=hemB PE=3 SV=1
Length = 324
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME 216
D+ +G D ++VKPAL YLDI+ +VK+ H P+ Y VSG + + A +
Sbjct: 237 DLKEGCDMMIVKPALSYLDIVRDVKN-HTNVPVVAY-----NVSGEYSMTKAAAQ 285
>sp|Q6G8Q7|HEM2_STAAS Delta-aminolevulinic acid dehydratase OS=Staphylococcus aureus
(strain MSSA476) GN=hemB PE=3 SV=1
Length = 324
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME 216
D+ +G D ++VKPAL YLDI+ +VK+ H P+ Y VSG + + A +
Sbjct: 237 DLKEGCDMMIVKPALSYLDIVRDVKN-HTNVPVVAY-----NVSGEYSMTKAAAQ 285
>sp|Q6GG37|HEM2_STAAR Delta-aminolevulinic acid dehydratase OS=Staphylococcus aureus
(strain MRSA252) GN=hemB PE=3 SV=1
Length = 324
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME 216
D+ +G D ++VKPAL YLDI+ +VK+ H P+ Y VSG + + A +
Sbjct: 237 DLKEGCDMMIVKPALSYLDIVRDVKN-HTNVPVVAY-----NVSGEYSMTKAAAQ 285
>sp|P64334|HEM2_STAAN Delta-aminolevulinic acid dehydratase OS=Staphylococcus aureus
(strain N315) GN=hemB PE=1 SV=1
Length = 324
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME 216
D+ +G D ++VKPAL YLDI+ +VK+ H P+ Y VSG + + A +
Sbjct: 237 DLKEGCDMMIVKPALSYLDIVRDVKN-HTNVPVVAY-----NVSGEYSMTKAAAQ 285
>sp|P64333|HEM2_STAAM Delta-aminolevulinic acid dehydratase OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=hemB PE=1 SV=1
Length = 324
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME 216
D+ +G D ++VKPAL YLDI+ +VK+ H P+ Y VSG + + A +
Sbjct: 237 DLKEGCDMMIVKPALSYLDIVRDVKN-HTNVPVVAY-----NVSGEYSMTKAAAQ 285
>sp|Q5HFA4|HEM2_STAAC Delta-aminolevulinic acid dehydratase OS=Staphylococcus aureus
(strain COL) GN=hemB PE=3 SV=1
Length = 324
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME 216
D+ +G D ++VKPAL YLDI+ +VK+ H P+ Y VSG + + A +
Sbjct: 237 DLKEGCDMMIVKPALSYLDIVRDVKN-HTNVPVVAY-----NVSGEYSMTKAAAQ 285
>sp|Q2FXR3|HEM2_STAA8 Delta-aminolevulinic acid dehydratase OS=Staphylococcus aureus
(strain NCTC 8325) GN=hemB PE=3 SV=1
Length = 324
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAME 216
D+ +G D ++VKPAL YLDI+ +VK+ H P+ Y VSG + + A +
Sbjct: 237 DLKEGCDMMIVKPALSYLDIVRDVKN-HTNVPVVAY-----NVSGEYSMTKAAAQ 285
>sp|P77923|HEM2_PROFF Delta-aminolevulinic acid dehydratase OS=Propionibacterium
freudenreichii subsp. freudenreichii GN=hemB PE=3 SV=1
Length = 332
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVK--SRHPAYPLFVYQERCITVSGHFEANEKAMEM-- 217
D+ QGADF+MVKPA+ YLD+++ + S P V E + F A A++
Sbjct: 242 DLEQGADFVMVKPAMAYLDVLAAARAISNVPVAAYVVSGEYSMI---EFAAKAGALDRKR 298
Query: 218 -ILEKIAEDPSSGSCSNVSY 236
I+E + +G+ + V+Y
Sbjct: 299 CIMEALTSVKRAGASTIVTY 318
>sp|O33357|HEM2_MYCTU Delta-aminolevulinic acid dehydratase OS=Mycobacterium tuberculosis
GN=hemB PE=3 SV=1
Length = 329
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
D+ +GAD +MVKPA+ YLD+++ P P+ YQ VSG +
Sbjct: 243 DLDEGADIVMVKPAMGYLDVVAAAADVSP-VPVAAYQ-----VSGEY 283
>sp|P43087|HEM2_SYNE7 Delta-aminolevulinic acid dehydratase OS=Synechococcus elongatus
(strain PCC 7942) GN=hemB PE=3 SV=2
Length = 326
Score = 39.3 bits (90), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVK 186
DV++GAD +MVKPAL Y+DII +K
Sbjct: 240 DVAEGADIVMVKPALSYMDIICRIK 264
>sp|Q59334|HEM2_CHLP8 Delta-aminolevulinic acid dehydratase OS=Chlorobaculum parvum
(strain NCIB 8327) GN=hemB PE=1 SV=1
Length = 328
Score = 38.5 bits (88), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 162 DVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
D+ +GAD +MVKP L YLDI+ K R P+ +Y VSG +
Sbjct: 242 DIVEGADIVMVKPGLAYLDIVWRTKERFDV-PVAIYH-----VSGEY 282
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.134 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,618,144
Number of Sequences: 539616
Number of extensions: 3220510
Number of successful extensions: 9483
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 9419
Number of HSP's gapped (non-prelim): 68
length of query: 263
length of database: 191,569,459
effective HSP length: 115
effective length of query: 148
effective length of database: 129,513,619
effective search space: 19168015612
effective search space used: 19168015612
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)