Query psy15130
Match_columns 263
No_of_seqs 189 out of 746
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 21:21:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15130.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15130hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04824 eu_ALAD_PBGS_cysteine_ 100.0 9.4E-77 2E-81 550.7 12.4 196 29-242 97-317 (320)
2 cd00384 ALAD_PBGS Porphobilino 100.0 2.9E-76 6.3E-81 546.6 11.7 195 28-242 93-311 (314)
3 PRK13384 delta-aminolevulinic 100.0 6.7E-76 1.5E-80 545.4 11.4 194 28-241 103-319 (322)
4 cd04823 ALAD_PBGS_aspartate_ri 100.0 8.9E-76 1.9E-80 544.5 11.8 195 28-242 98-316 (320)
5 COG0113 HemB Delta-aminolevuli 100.0 8.9E-76 1.9E-80 543.4 11.6 197 28-243 105-325 (330)
6 PRK09283 delta-aminolevulinic 100.0 9.7E-76 2.1E-80 545.0 10.9 195 28-242 101-319 (323)
7 PF00490 ALAD: Delta-aminolevu 100.0 9.6E-76 2.1E-80 545.2 10.7 196 28-242 101-321 (324)
8 KOG2794|consensus 100.0 1.5E-71 3.3E-76 511.0 11.3 196 27-240 112-331 (340)
9 KOG2191|consensus 99.6 1.7E-15 3.6E-20 143.7 4.3 92 153-244 128-224 (402)
10 cd02396 PCBP_like_KH K homolog 91.8 0.27 5.9E-06 35.5 3.9 49 165-218 9-64 (65)
11 cd02393 PNPase_KH Polynucleoti 85.2 1.5 3.3E-05 31.8 4.0 48 166-218 12-60 (61)
12 PRK08185 hypothetical protein; 84.5 1.2 2.6E-05 41.9 4.0 59 160-225 155-228 (283)
13 cd02394 vigilin_like_KH K homo 83.1 1.8 3.9E-05 30.5 3.5 47 167-218 11-61 (62)
14 cd00105 KH-I K homology RNA-bi 81.9 2.9 6.2E-05 28.9 4.2 48 166-218 10-63 (64)
15 KOG2190|consensus 81.8 2.3 5E-05 42.9 5.0 55 167-225 149-209 (485)
16 cd08205 RuBisCO_IV_RLP Ribulos 81.2 4.9 0.00011 38.8 6.8 105 79-198 147-254 (367)
17 smart00322 KH K homology RNA-b 81.2 3.9 8.3E-05 27.4 4.5 52 167-222 14-68 (69)
18 cd00377 ICL_PEPM Members of th 78.2 12 0.00027 33.8 8.0 104 82-198 88-203 (243)
19 KOG2190|consensus 68.6 7.2 0.00016 39.5 4.5 62 167-232 54-129 (485)
20 KOG2191|consensus 68.2 6.2 0.00013 39.1 3.8 61 165-231 48-118 (402)
21 PF13014 KH_3: KH domain 68.0 6.6 0.00014 26.2 2.9 36 167-206 2-43 (43)
22 PF00013 KH_1: KH domain syndr 63.9 3.2 6.9E-05 29.0 0.7 47 167-218 11-60 (60)
23 PRK04147 N-acetylneuraminate l 62.9 47 0.001 30.5 8.3 114 60-198 15-137 (293)
24 TIGR00674 dapA dihydrodipicoli 59.6 52 0.0011 30.0 7.9 114 60-198 10-131 (285)
25 TIGR02313 HpaI-NOT-DapA 2,4-di 58.5 55 0.0012 30.3 8.0 115 60-198 12-134 (294)
26 cd00950 DHDPS Dihydrodipicolin 57.6 73 0.0016 28.7 8.5 114 60-198 12-133 (284)
27 KOG2193|consensus 55.7 6.8 0.00015 40.0 1.7 61 167-227 210-272 (584)
28 cd00408 DHDPS-like Dihydrodipi 54.4 82 0.0018 28.2 8.2 115 60-199 9-131 (281)
29 cd00954 NAL N-Acetylneuraminic 52.0 1.1E+02 0.0023 28.0 8.8 119 60-200 12-137 (288)
30 cd00739 DHPS DHPS subgroup of 50.8 55 0.0012 30.1 6.6 43 151-194 22-79 (257)
31 cd00956 Transaldolase_FSA Tran 49.5 36 0.00078 30.4 5.1 111 30-187 70-194 (211)
32 cd00959 DeoC 2-deoxyribose-5-p 49.4 1.8E+02 0.0039 25.3 9.4 152 69-259 12-177 (203)
33 cd00945 Aldolase_Class_I Class 47.0 76 0.0017 25.8 6.3 47 155-201 67-123 (201)
34 cd00951 KDGDH 5-dehydro-4-deox 46.7 1.3E+02 0.0029 27.6 8.5 113 60-198 12-132 (289)
35 TIGR03665 arCOG04150 arCOG0415 46.2 34 0.00074 29.6 4.4 55 167-228 100-154 (172)
36 TIGR00126 deoC deoxyribose-pho 45.1 2.1E+02 0.0045 25.9 9.3 154 69-259 13-178 (211)
37 PRK07455 keto-hydroxyglutarate 43.6 42 0.00092 29.2 4.6 41 157-197 116-158 (187)
38 TIGR02990 ectoine_eutA ectoine 43.4 75 0.0016 29.1 6.3 86 111-198 107-213 (239)
39 cd08210 RLP_RrRLP Ribulose bis 43.2 1E+02 0.0022 30.1 7.4 106 79-197 142-249 (364)
40 PRK15063 isocitrate lyase; Pro 42.9 82 0.0018 31.9 6.9 90 104-198 200-312 (428)
41 KOG2192|consensus 41.7 53 0.0012 32.1 5.2 65 164-232 131-201 (390)
42 KOG2192|consensus 41.6 42 0.0009 32.8 4.5 59 165-227 57-118 (390)
43 PF00072 Response_reg: Respons 41.2 39 0.00084 24.6 3.4 50 165-219 42-94 (112)
44 PF02548 Pantoate_transf: Keto 40.5 60 0.0013 30.7 5.3 49 146-196 87-136 (261)
45 TIGR02319 CPEP_Pphonmut carbox 40.0 77 0.0017 30.2 6.0 71 108-194 134-204 (294)
46 PF06838 Met_gamma_lyase: Meth 39.2 29 0.00062 34.8 3.1 27 28-54 179-205 (403)
47 PLN02495 oxidoreductase, actin 38.7 64 0.0014 31.8 5.4 60 172-239 94-153 (385)
48 PRK03620 5-dehydro-4-deoxygluc 38.6 2.4E+02 0.0051 26.2 8.9 112 61-198 20-139 (303)
49 cd00952 CHBPH_aldolase Trans-o 38.4 1.8E+02 0.0039 27.1 8.2 112 63-198 23-142 (309)
50 TIGR03249 KdgD 5-dehydro-4-deo 38.0 2.3E+02 0.0051 26.0 8.7 113 60-198 17-137 (296)
51 PRK03170 dihydrodipicolinate s 37.5 2.5E+02 0.0053 25.6 8.7 113 60-198 13-134 (292)
52 PF13714 PEP_mutase: Phosphoen 37.5 46 0.001 30.4 4.0 101 82-196 89-196 (238)
53 TIGR01859 fruc_bis_ald_ fructo 37.3 44 0.00095 31.2 3.9 53 165-224 165-229 (282)
54 PF03437 BtpA: BtpA family; I 36.8 2.1E+02 0.0045 26.8 8.2 101 82-195 93-204 (254)
55 cd00423 Pterin_binding Pterin 36.5 1.1E+02 0.0023 27.8 6.2 43 151-194 22-79 (258)
56 TIGR00683 nanA N-acetylneurami 35.9 2.5E+02 0.0054 25.9 8.6 118 60-200 12-137 (290)
57 cd01061 RNase_T2_euk Ribonucle 35.8 23 0.00051 30.5 1.7 85 30-134 63-156 (195)
58 TIGR02317 prpB methylisocitrat 35.6 96 0.0021 29.3 5.9 75 104-194 126-200 (285)
59 cd06556 ICL_KPHMT Members of t 34.8 3.1E+02 0.0067 25.2 8.9 132 27-198 61-198 (240)
60 COG3543 Uncharacterized conser 34.6 37 0.00081 29.5 2.8 30 35-67 37-70 (135)
61 PF00701 DHDPS: Dihydrodipicol 33.4 1.9E+02 0.004 26.3 7.2 115 60-199 13-135 (289)
62 cd02072 Glm_B12_BD B12 binding 32.9 55 0.0012 27.6 3.4 45 82-131 40-86 (128)
63 PRK11320 prpB 2-methylisocitra 32.6 2.2E+02 0.0048 27.1 7.8 75 104-194 131-205 (292)
64 KOG2193|consensus 32.0 31 0.00068 35.4 2.2 57 168-224 292-352 (584)
65 TIGR01496 DHPS dihydropteroate 31.7 1.4E+02 0.003 27.4 6.1 60 151-218 21-95 (257)
66 smart00455 RBD Raf-like Ras-bi 31.7 70 0.0015 24.1 3.5 26 168-193 12-37 (70)
67 PRK04452 acetyl-CoA decarbonyl 31.5 2.1E+02 0.0046 27.7 7.5 48 164-218 87-149 (319)
68 PF01487 DHquinase_I: Type I 3 31.3 1.4E+02 0.0031 26.0 5.9 88 165-255 22-139 (224)
69 KOG3349|consensus 31.3 61 0.0013 29.1 3.6 60 115-176 27-90 (170)
70 TIGR01501 MthylAspMutase methy 30.6 68 0.0015 27.2 3.7 43 82-129 42-86 (134)
71 PF01680 SOR_SNZ: SOR/SNZ fami 30.1 81 0.0018 29.1 4.2 34 152-185 123-157 (208)
72 COG0710 AroD 3-dehydroquinate 28.9 1.3E+02 0.0028 27.9 5.4 77 176-254 42-141 (231)
73 COG2226 UbiE Methylase involve 28.8 82 0.0018 29.1 4.1 124 80-218 62-202 (238)
74 PRK00043 thiE thiamine-phospha 28.6 1.1E+02 0.0024 25.8 4.6 42 157-198 115-167 (212)
75 PRK00071 nadD nicotinic acid m 28.5 3.4E+02 0.0074 23.5 7.8 78 109-193 18-102 (203)
76 KOG1676|consensus 28.1 51 0.0011 34.7 2.9 56 168-227 330-392 (600)
77 cd00452 KDPG_aldolase KDPG and 27.9 1E+02 0.0022 26.4 4.4 40 157-196 108-148 (190)
78 PRK11613 folP dihydropteroate 27.6 1.1E+02 0.0025 28.8 5.0 42 151-193 36-92 (282)
79 PRK10586 putative oxidoreducta 27.0 2.1E+02 0.0045 27.5 6.7 88 109-197 19-116 (362)
80 COG2197 CitB Response regulato 26.9 92 0.002 27.3 4.0 50 164-218 44-96 (211)
81 PF06506 PrpR_N: Propionate ca 26.2 69 0.0015 27.2 3.0 38 163-212 31-68 (176)
82 PRK01060 endonuclease IV; Prov 25.7 1.6E+02 0.0036 26.0 5.4 45 82-126 15-63 (281)
83 TIGR00259 thylakoid_BtpA membr 25.6 3.6E+02 0.0079 25.3 7.8 102 82-195 92-204 (257)
84 KOG1676|consensus 25.0 1E+02 0.0022 32.5 4.4 57 165-225 239-301 (600)
85 PRK06806 fructose-bisphosphate 25.0 1.1E+02 0.0023 28.8 4.2 52 165-223 165-228 (281)
86 cd00374 RNase_T2 Ribonuclease 25.0 52 0.0011 27.9 2.0 86 29-133 63-155 (195)
87 PRK06015 keto-hydroxyglutarate 24.9 1.1E+02 0.0024 27.6 4.2 39 157-195 108-148 (201)
88 PRK00278 trpC indole-3-glycero 23.5 3.4E+02 0.0074 24.8 7.1 85 114-218 40-133 (260)
89 PF05582 Peptidase_U57: YabG p 23.0 1.1E+02 0.0024 29.6 3.9 28 28-65 145-172 (287)
90 PF13407 Peripla_BP_4: Peripla 22.8 4.6E+02 0.01 22.0 8.0 73 151-225 40-122 (257)
91 PRK05096 guanosine 5'-monophos 22.7 1.1E+02 0.0025 30.1 4.1 40 159-198 115-158 (346)
92 COG1794 RacX Aspartate racemas 22.6 1.6E+02 0.0034 27.7 4.7 62 79-144 63-137 (230)
93 PRK13763 putative RNA-processi 22.5 1.6E+02 0.0034 25.7 4.6 54 167-227 106-159 (180)
94 TIGR00640 acid_CoA_mut_C methy 22.3 1E+02 0.0023 25.6 3.3 82 82-188 43-126 (132)
95 PF02601 Exonuc_VII_L: Exonucl 22.3 1.3E+02 0.0028 27.7 4.2 40 167-209 17-56 (319)
96 PF04592 SelP_N: Selenoprotein 22.2 78 0.0017 29.8 2.7 23 110-132 46-68 (238)
97 PRK07315 fructose-bisphosphate 22.0 1.2E+02 0.0027 28.5 4.1 57 164-225 164-232 (293)
98 PRK12656 fructose-6-phosphate 21.9 1.1E+02 0.0023 28.1 3.5 77 81-185 116-196 (222)
99 COG1570 XseA Exonuclease VII, 21.9 1.1E+02 0.0024 31.0 4.0 39 167-208 138-176 (440)
100 PLN02417 dihydrodipicolinate s 21.8 5.2E+02 0.011 23.7 8.0 112 60-198 13-132 (280)
101 COG0413 PanB Ketopantoate hydr 21.8 1.7E+02 0.0037 28.1 4.9 49 146-196 86-135 (268)
102 PRK06843 inosine 5-monophospha 21.7 1.4E+02 0.0031 29.7 4.6 61 156-222 155-219 (404)
103 cd06411 PB1_p51 The PB1 domain 21.0 2E+02 0.0044 22.7 4.5 46 170-216 11-64 (78)
104 PRK04180 pyridoxal biosynthesi 21.0 1.5E+02 0.0032 28.8 4.3 18 156-173 131-148 (293)
105 COG2070 Dioxygenases related t 20.9 2.3E+02 0.0051 27.2 5.7 59 157-221 138-209 (336)
106 PF00445 Ribonuclease_T2: Ribo 20.7 86 0.0019 26.7 2.5 92 29-135 66-162 (189)
107 COG0269 SgbH 3-hexulose-6-phos 20.4 83 0.0018 29.2 2.5 19 28-46 45-63 (217)
No 1
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=100.00 E-value=9.4e-77 Score=550.75 Aligned_cols=196 Identities=27% Similarity=0.346 Sum_probs=184.0
Q ss_pred HHHHHHhhCCCeEEEeeeccccCCCCCcceeeeCCCcccccccccccchhchHHHHHHHHhH-hhHhhcccccccCCCcc
Q psy15130 29 LSCLVLSCLPAFLWWVQTCAMQRAKHLHCTLHVKSNLTNANVFHVSENFCTDTQLVMAYSRY-IICIALHDAWQTRPIQT 107 (263)
Q Consensus 29 ~~~~ik~~fP~l~v~~DvCLceYT~HGHCGil~~dg~i~~Nd~tv~~~~~rla~~Al~~A~A-Ad~VAPsdmm~~~Psdm 107 (263)
++|.||++||+++|+|||||||||+||||||++++|.|+ ||+|| + +|++||++||+| ||+|||||||
T Consensus 97 air~iK~~~pdl~vi~Dvclc~YT~hGHcGil~~~g~vd-ND~Tl-~---~L~k~Avs~A~AGADiVAPSdMM------- 164 (320)
T cd04824 97 AIKLIREEFPELLIACDVCLCEYTSHGHCGILYEDGTIN-NEASV-K---RLAEVALAYAKAGAHIVAPSDMM------- 164 (320)
T ss_pred HHHHHHHhCCCcEEEEeeeccCCCCCCcceeECCCCcCc-CHHHH-H---HHHHHHHHHHHhCCCEEeccccc-------
Confidence 789999999999999999999999999999998889999 99998 4 567999999999 9999977776
Q ss_pred cchhHHHHHHHHHhCCC-CCceeeee-eccccc--ccccc---------cccccccch---hHHHHHHHhchhcCCCeeE
Q psy15130 108 SATHIKDIRQKTANLSD-THKRLLQC-SKTLLQ--LNFLK---------HVQTNEFHC---IARCIAQARDVSQGADFLM 171 (263)
Q Consensus 108 ~DGrI~aIR~aLd~~G~-~~v~im~y-~k~~ss--gPFRd---------~~~~yq~~~---~~~~~e~~~Di~EGAD~Im 171 (263)
||||++||++||++|| +++.||+| +||+|+ ||||+ +|++||+|| +++++|+.+|++|||||||
T Consensus 165 -DGrV~aIR~aLD~~G~~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~~gDRksYQmdp~n~~eAlre~~~D~~EGAD~lM 243 (320)
T cd04824 165 -DGRVRAIKQALIQAGLGNKVSVMSYSAKFASCLYGPFRDAACSAPSFGDRRCYQLPPGARGLALRAVERDVSEGADMIM 243 (320)
T ss_pred -ccHHHHHHHHHHHCCCccCCeeeehHHHhhhhccchHHHHhcCCCCCCCccccCCCCcCHHHHHHHHHhhHHhCCCEEE
Confidence 9999999999999999 99999999 899888 99997 589999987 5678999999999999999
Q ss_pred ecCCccHHHHHHHHHhhCCCCCeeecccceeeccCchhHHHHHHHHH--------HHhhccCCCCCccccccccccccc
Q psy15130 172 VKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAMEMI--------LEKIAEDPSSGSCSNVSYALRYGT 242 (263)
Q Consensus 172 VKPg~~yLDII~~ik~~~~~~Pi~aYqERvItVSGEyami~aAa~~~--------l~kia~dp~ags~l~iSY~~l~Gp 242 (263)
||||++|||||+++|++|+++|+++|| |||||+|||+|+++| +|.+....++|++++|||++.+.+
T Consensus 244 VKPal~YLDIi~~~k~~~~~~PvaaYq-----VSGEYaMikaAa~~G~iDe~~~~~Esl~~ikRAGAd~IiTYfA~~~a 317 (320)
T cd04824 244 VKPGTPYLDIVREAKDKHPDLPLAVYH-----VSGEYAMLHAAAEAGAFDLKRAVLEAMTGFRRAGADIIITYFTPELL 317 (320)
T ss_pred EcCCchHHHHHHHHHHhccCCCEEEEE-----ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcCCCEEEeecHHHHH
Confidence 999999999999999999899999999 999999999999988 888888899999999999987643
No 2
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=100.00 E-value=2.9e-76 Score=546.65 Aligned_cols=195 Identities=22% Similarity=0.300 Sum_probs=182.0
Q ss_pred HHHHHHHhhCCCeEEEeeeccccCCCCCcceeeeCCCcccccccccccchhchHHHHHHHHhH-hhHhhcccccccCCCc
Q psy15130 28 VLSCLVLSCLPAFLWWVQTCAMQRAKHLHCTLHVKSNLTNANVFHVSENFCTDTQLVMAYSRY-IICIALHDAWQTRPIQ 106 (263)
Q Consensus 28 ~~~~~ik~~fP~l~v~~DvCLceYT~HGHCGil~~dg~i~~Nd~tv~~~~~rla~~Al~~A~A-Ad~VAPsdmm~~~Psd 106 (263)
-++|.||+.||+++|+|||||||||+||||||++ +|.|+ ||+|| + +|++||++||+| ||+|||||||
T Consensus 93 ~air~iK~~~p~l~vi~DvcLc~YT~hGHcGil~-~~~id-ND~Tl-~---~L~k~Als~A~AGADiVAPSdMM------ 160 (314)
T cd00384 93 RAIRAIKEAVPELVVITDVCLCEYTDHGHCGILK-DDYVD-NDATL-E---LLAKIAVSHAEAGADIVAPSDMM------ 160 (314)
T ss_pred HHHHHHHHhCCCcEEEEeeeccCCCCCCcceecc-CCcCc-cHHHH-H---HHHHHHHHHHHcCCCeeeccccc------
Confidence 4789999999999999999999999999999997 47999 99998 3 567999999999 9999977776
Q ss_pred ccchhHHHHHHHHHhCCCCCceeeee-eccccc--ccccc---------cccccccch---hHHHHHHHhchhcCCCeeE
Q psy15130 107 TSATHIKDIRQKTANLSDTHKRLLQC-SKTLLQ--LNFLK---------HVQTNEFHC---IARCIAQARDVSQGADFLM 171 (263)
Q Consensus 107 m~DGrI~aIR~aLd~~G~~~v~im~y-~k~~ss--gPFRd---------~~~~yq~~~---~~~~~e~~~Di~EGAD~Im 171 (263)
||||++||++||++||+|+.||+| +||+|+ ||||| +|++||+|| .++++|+++|++|||||||
T Consensus 161 --DGrV~aIR~aLd~~g~~~v~ImsYsaKyaSafYGPFRdAa~Sap~~gDRktYQmdpan~~eAlre~~~D~~EGAD~lM 238 (314)
T cd00384 161 --DGRVAAIREALDEAGFSDVPIMSYSAKYASAFYGPFRDAADSAPSFGDRKTYQMDPANRREALREVELDIEEGADILM 238 (314)
T ss_pred --ccHHHHHHHHHHHCCCCCCceeecHHHhhhhccchHHHHhhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEE
Confidence 999999999999999999999999 888888 99997 689999987 6678999999999999999
Q ss_pred ecCCccHHHHHHHHHhhCCCCCeeecccceeeccCchhHHHHHHHHH--------HHhhccCCCCCccccccccccccc
Q psy15130 172 VKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAMEMI--------LEKIAEDPSSGSCSNVSYALRYGT 242 (263)
Q Consensus 172 VKPg~~yLDII~~ik~~~~~~Pi~aYqERvItVSGEyami~aAa~~~--------l~kia~dp~ags~l~iSY~~l~Gp 242 (263)
||||++|||||+++|++| ++|+++|| |||||+|||+|+++| +|.+....++|++++|||++.+.+
T Consensus 239 VKPal~YLDIi~~~k~~~-~~PvaaYq-----VSGEYaMikaAa~~G~id~~~~~~Esl~~~kRAGAd~IiTYfA~~~a 311 (314)
T cd00384 239 VKPALAYLDIIRDVRERF-DLPVAAYN-----VSGEYAMIKAAAKNGWIDEERVVLESLTSIKRAGADLIITYFAKDAA 311 (314)
T ss_pred EcCCchHHHHHHHHHHhc-CCCEEEEE-----ccHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCCEEEeecHHHHH
Confidence 999999999999999999 89999999 999999999999988 788888899999999999987643
No 3
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=100.00 E-value=6.7e-76 Score=545.39 Aligned_cols=194 Identities=22% Similarity=0.270 Sum_probs=181.2
Q ss_pred HHHHHHHhhCCCeEEEeeeccccCCCCCcceeeeCCCcccccccccccchhchHHHHHHHHhH-hhHhhcccccccCCCc
Q psy15130 28 VLSCLVLSCLPAFLWWVQTCAMQRAKHLHCTLHVKSNLTNANVFHVSENFCTDTQLVMAYSRY-IICIALHDAWQTRPIQ 106 (263)
Q Consensus 28 ~~~~~ik~~fP~l~v~~DvCLceYT~HGHCGil~~dg~i~~Nd~tv~~~~~rla~~Al~~A~A-Ad~VAPsdmm~~~Psd 106 (263)
-++|.||+.|||++|+|||||||||+||||||++ +|.|+ ||+|| + +|++||++||+| ||+|||||||
T Consensus 103 ~air~iK~~~pdl~vi~DVcLc~YT~hGHcGil~-~g~i~-ND~Tl-~---~L~~~Als~A~AGADiVAPSdMM------ 170 (322)
T PRK13384 103 RMVRTIKAAVPEMMVIPDICFCEYTDHGHCGVLH-NDEVD-NDATV-E---NLVKQSVTAAKAGADMLAPSAMM------ 170 (322)
T ss_pred HHHHHHHHHCCCeEEEeeeecccCCCCCceeecc-CCcCc-cHHHH-H---HHHHHHHHHHHcCCCeEeccccc------
Confidence 3789999999999999999999999999999997 48899 99998 4 566999999999 9999977776
Q ss_pred ccchhHHHHHHHHHhCCCCCceeeee-eccccc--ccccc--------cccccccch---hHHHHHHHhchhcCCCeeEe
Q psy15130 107 TSATHIKDIRQKTANLSDTHKRLLQC-SKTLLQ--LNFLK--------HVQTNEFHC---IARCIAQARDVSQGADFLMV 172 (263)
Q Consensus 107 m~DGrI~aIR~aLd~~G~~~v~im~y-~k~~ss--gPFRd--------~~~~yq~~~---~~~~~e~~~Di~EGAD~ImV 172 (263)
||||++||++||++||+|+.||+| +||+|+ ||||| +|++||+|| .++++|+++|++||||||||
T Consensus 171 --DGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~gDrksYQmdp~n~~eAlre~~~D~~EGAD~lMV 248 (322)
T PRK13384 171 --DGQVKAIRQGLDAAGFEHVAILAHSAKFASSFYGPFRAAVDCELSGDRKSYQLDYANGRQALLEALLDEAEGADILMV 248 (322)
T ss_pred --ccHHHHHHHHHHHCCCCCCceeehhHhhhhhhcchHHHHhcCCCCCCcccccCCCCCHHHHHHHHHhhHhhCCCEEEE
Confidence 999999999999999999999999 888888 99997 689999987 66789999999999999999
Q ss_pred cCCccHHHHHHHHHhhCCCCCeeecccceeeccCchhHHHHHHHHH--------HHhhccCCCCCcccccccccccc
Q psy15130 173 KPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAMEMI--------LEKIAEDPSSGSCSNVSYALRYG 241 (263)
Q Consensus 173 KPg~~yLDII~~ik~~~~~~Pi~aYqERvItVSGEyami~aAa~~~--------l~kia~dp~ags~l~iSY~~l~G 241 (263)
|||++|||||+++|+++ ++|+++|| |||||+|||+|+++| +|.+....++|++++|||++.+.
T Consensus 249 KPal~YLDIi~~~k~~~-~lPvaaYq-----VSGEYaMikaAa~~G~~d~~~~~~Esl~~~kRAGAd~IiTYfA~~~ 319 (322)
T PRK13384 249 KPGTPYLDVLSRLRQET-HLPLAAYQ-----VGGEYAMIKFAALAGALDERAVVTETLGGLKRAGADLIVSYYAKQY 319 (322)
T ss_pred cCCchHHHHHHHHHhcc-CCCEEEEE-----chHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCCEEeehhHHHH
Confidence 99999999999999998 89999999 999999999999877 88888889999999999998764
No 4
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=100.00 E-value=8.9e-76 Score=544.49 Aligned_cols=195 Identities=23% Similarity=0.215 Sum_probs=181.4
Q ss_pred HHHHHHHhhCCCeEEEeeeccccCCCCCcceeeeCCCcccccccccccchhchHHHHHHHHhH-hhHhhcccccccCCCc
Q psy15130 28 VLSCLVLSCLPAFLWWVQTCAMQRAKHLHCTLHVKSNLTNANVFHVSENFCTDTQLVMAYSRY-IICIALHDAWQTRPIQ 106 (263)
Q Consensus 28 ~~~~~ik~~fP~l~v~~DvCLceYT~HGHCGil~~dg~i~~Nd~tv~~~~~rla~~Al~~A~A-Ad~VAPsdmm~~~Psd 106 (263)
-++|.||++||+++|+|||||||||+||||||+++ |.|+ ||+|| .+|++||++||+| ||+|||||||
T Consensus 98 ~air~iK~~~p~l~vi~DVclc~YT~hGHcGil~~-~~id-ND~Tl----~~L~~~Avs~A~AGADiVAPSdMM------ 165 (320)
T cd04823 98 RAIRAIKEAFPELGIITDVALDPYTSHGHDGIVRD-GGIL-NDETV----EVLCKQALVQAEAGADIVAPSDMM------ 165 (320)
T ss_pred HHHHHHHHhCCCcEEEEeeeccCCCCCCcceeccC-CcCc-CHHHH----HHHHHHHHHHHHhCCCEEEcccch------
Confidence 37899999999999999999999999999999985 5599 99998 4577999999999 9999977777
Q ss_pred ccchhHHHHHHHHHhCCCCCceeeee-eccccc--ccccc---------cccccccch---hHHHHHHHhchhcCCCeeE
Q psy15130 107 TSATHIKDIRQKTANLSDTHKRLLQC-SKTLLQ--LNFLK---------HVQTNEFHC---IARCIAQARDVSQGADFLM 171 (263)
Q Consensus 107 m~DGrI~aIR~aLd~~G~~~v~im~y-~k~~ss--gPFRd---------~~~~yq~~~---~~~~~e~~~Di~EGAD~Im 171 (263)
||||++||++||++||+|+.||+| +||+|+ ||||| +|++||+|| .++++|+++|++|||||||
T Consensus 166 --DGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~n~~eAlre~~~Di~EGAD~lM 243 (320)
T cd04823 166 --DGRIGAIREALDAEGFTNVSILSYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPANSREALREVALDIAEGADMVM 243 (320)
T ss_pred --hhHHHHHHHHHHHCCCCCCceeechHHhhhhccchhHHHhcCCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEE
Confidence 999999999999999999999999 898888 99997 589999987 6678999999999999999
Q ss_pred ecCCccHHHHHHHHHhhCCCCCeeecccceeeccCchhHHHHHHHHH--------HHhhccCCCCCccccccccccccc
Q psy15130 172 VKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAMEMI--------LEKIAEDPSSGSCSNVSYALRYGT 242 (263)
Q Consensus 172 VKPg~~yLDII~~ik~~~~~~Pi~aYqERvItVSGEyami~aAa~~~--------l~kia~dp~ags~l~iSY~~l~Gp 242 (263)
||||++|||||+++|+++ ++|+++|| |||||+|||+|+++| +|.+....++|++++|||++.+.+
T Consensus 244 VKPal~YLDIi~~~k~~~-~lPvaaYq-----VSGEYaMikaAa~~G~~d~~~~~~Esl~~ikRAGAd~IiTY~A~~~a 316 (320)
T cd04823 244 VKPGMPYLDIIRRVKDEF-GVPTFAYQ-----VSGEYAMLKAAAQNGWLDEDKVMLESLLAFKRAGADGILTYFAKEAA 316 (320)
T ss_pred EcCCchHHHHHHHHHHhc-CCCEEEEE-----ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcCCCEEeeccHHHHH
Confidence 999999999999999999 89999999 999999999999977 788888899999999999987653
No 5
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=100.00 E-value=8.9e-76 Score=543.40 Aligned_cols=197 Identities=23% Similarity=0.287 Sum_probs=184.4
Q ss_pred HHHHHHHhhCCCeEEEeeeccccCCCCCcceeeeCCCcccccccccccchhchHHHHHHHHhH-hhHhhcccccccCCCc
Q psy15130 28 VLSCLVLSCLPAFLWWVQTCAMQRAKHLHCTLHVKSNLTNANVFHVSENFCTDTQLVMAYSRY-IICIALHDAWQTRPIQ 106 (263)
Q Consensus 28 ~~~~~ik~~fP~l~v~~DvCLceYT~HGHCGil~~dg~i~~Nd~tv~~~~~rla~~Al~~A~A-Ad~VAPsdmm~~~Psd 106 (263)
-++|.||+.||+++|+|||||||||+||||||++++|+|+ ||+|| + .+++||++||+| ||+|||||||
T Consensus 105 ravr~ik~~~p~l~iitDvcLceyT~HGHcGil~~~~~V~-ND~Tl-e---~l~k~Avs~AeAGAdivAPSdMM------ 173 (330)
T COG0113 105 RAVRAIKEAFPELVVITDVCLCEYTDHGHCGILDDGGYVD-NDETL-E---ILAKQAVSQAEAGADIVAPSDMM------ 173 (330)
T ss_pred HHHHHHHHhCCCeEEEeeecccCCcCCCccccccCCCeec-chHHH-H---HHHHHHHHHHHcCCCeecccccc------
Confidence 4789999999999999999999999999999999988999 99999 4 466999999999 9999977766
Q ss_pred ccchhHHHHHHHHHhCCCCCceeeee-eccccc--ccccc---------cccccccch---hHHHHHHHhchhcCCCeeE
Q psy15130 107 TSATHIKDIRQKTANLSDTHKRLLQC-SKTLLQ--LNFLK---------HVQTNEFHC---IARCIAQARDVSQGADFLM 171 (263)
Q Consensus 107 m~DGrI~aIR~aLd~~G~~~v~im~y-~k~~ss--gPFRd---------~~~~yq~~~---~~~~~e~~~Di~EGAD~Im 171 (263)
||||++||++||++||.|+.||+| +||+|+ ||||| +|++||++| .++++|+++|++|||||||
T Consensus 174 --DGrV~aIR~aLd~ag~~~v~IMsYsaKyASafYGPFRdAa~Sap~~gdrktYQmDpaN~~EAlrE~~lD~~EGAD~lM 251 (330)
T COG0113 174 --DGRVGAIREALDEAGFIDVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREIELDIEEGADILM 251 (330)
T ss_pred --cchHHHHHHHHHHcCCCcceeeehhHHHhhhccccHHHHhhcccccCCcceeccCCcCHHHHHHHHHhhHhcCCcEEE
Confidence 999999999999999999999999 888888 99997 579999887 6778999999999999999
Q ss_pred ecCCccHHHHHHHHHhhCCCCCeeecccceeeccCchhHHHHHHHHH--------HHhhccCCCCCcccccccccccccc
Q psy15130 172 VKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAMEMI--------LEKIAEDPSSGSCSNVSYALRYGTE 243 (263)
Q Consensus 172 VKPg~~yLDII~~ik~~~~~~Pi~aYqERvItVSGEyami~aAa~~~--------l~kia~dp~ags~l~iSY~~l~Gp~ 243 (263)
||||++|||||+++|+.| ++|+++|| |||||+|+|+|+++| +|.+....++|++++|||++.+.++
T Consensus 252 VKPal~YLDIi~~vk~~~-~lP~~AYq-----VSGEYaMikAAa~nGwide~~~vlEsL~~~kRAGAd~IiTYfA~e~a~ 325 (330)
T COG0113 252 VKPALPYLDIIRRVKEEF-NLPVAAYQ-----VSGEYAMIKAAAQNGWIDEEKVVLESLTSIKRAGADLIITYFAKEVAE 325 (330)
T ss_pred EcCCchHHHHHHHHHHhc-CCCeEEEe-----cchHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCEEEeecHHHHHH
Confidence 999999999999999999 79999999 999999999999987 8889999999999999999987654
No 6
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=100.00 E-value=9.7e-76 Score=544.98 Aligned_cols=195 Identities=23% Similarity=0.271 Sum_probs=182.7
Q ss_pred HHHHHHHhhCCCeEEEeeeccccCCCCCcceeeeCCCcccccccccccchhchHHHHHHHHhH-hhHhhcccccccCCCc
Q psy15130 28 VLSCLVLSCLPAFLWWVQTCAMQRAKHLHCTLHVKSNLTNANVFHVSENFCTDTQLVMAYSRY-IICIALHDAWQTRPIQ 106 (263)
Q Consensus 28 ~~~~~ik~~fP~l~v~~DvCLceYT~HGHCGil~~dg~i~~Nd~tv~~~~~rla~~Al~~A~A-Ad~VAPsdmm~~~Psd 106 (263)
-++|.||++||+++|+|||||||||+||||||+++ |.|+ ||+|| .+|++||++||+| ||+|||||||
T Consensus 101 rair~iK~~~p~l~vi~DVcLc~YT~hGHcGil~~-g~id-ND~Tl----~~L~~~Al~~A~AGaDiVAPSdMM------ 168 (323)
T PRK09283 101 RAIRAIKKAFPELGVITDVCLDEYTSHGHCGILED-GYVD-NDETL----ELLAKQALSQAEAGADIVAPSDMM------ 168 (323)
T ss_pred HHHHHHHHhCCCcEEEEeeeccCCCCCCceecccC-CcCc-CHHHH----HHHHHHHHHHHHhCCCEEEccccc------
Confidence 37899999999999999999999999999999986 9999 99998 4577999999999 9999977766
Q ss_pred ccchhHHHHHHHHHhCCCCCceeeee-eccccc--ccccc---------cccccccch---hHHHHHHHhchhcCCCeeE
Q psy15130 107 TSATHIKDIRQKTANLSDTHKRLLQC-SKTLLQ--LNFLK---------HVQTNEFHC---IARCIAQARDVSQGADFLM 171 (263)
Q Consensus 107 m~DGrI~aIR~aLd~~G~~~v~im~y-~k~~ss--gPFRd---------~~~~yq~~~---~~~~~e~~~Di~EGAD~Im 171 (263)
||||++||++||++||+++.||+| +||+|+ ||||| +|++||+|| .++++|+++|++|||||||
T Consensus 169 --DGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdA~~Sap~~gDrktYQmdp~n~~eAlre~~~D~~EGAD~lM 246 (323)
T PRK09283 169 --DGRVGAIREALDEAGFTDVPIMSYSAKYASAFYGPFRDAAGSAPQFGDRKTYQMDPANRREALREVALDIEEGADMVM 246 (323)
T ss_pred --ccHHHHHHHHHHHCCCCCCceeecHHHHHHhhhHHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEE
Confidence 999999999999999999999999 888888 99997 689999987 6778999999999999999
Q ss_pred ecCCccHHHHHHHHHhhCCCCCeeecccceeeccCchhHHHHHHHHH--------HHhhccCCCCCccccccccccccc
Q psy15130 172 VKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAMEMI--------LEKIAEDPSSGSCSNVSYALRYGT 242 (263)
Q Consensus 172 VKPg~~yLDII~~ik~~~~~~Pi~aYqERvItVSGEyami~aAa~~~--------l~kia~dp~ags~l~iSY~~l~Gp 242 (263)
||||++|||||+++|++| +.|+++|| |||||+|||+|+++| +|.+....++|++++|||++.+.+
T Consensus 247 VKPal~YLDIi~~~k~~~-~~PvaaYq-----VSGEYaMikaAa~~G~~D~~~~~~Esl~~~kRAGAd~IiTYfA~~~a 319 (323)
T PRK09283 247 VKPALPYLDIIRRVKDEF-NLPVAAYQ-----VSGEYAMIKAAAQNGWIDEERVVLESLLSIKRAGADGILTYFAKDAA 319 (323)
T ss_pred EcCCchHHHHHHHHHhcC-CCCEEEEE-----ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCCEEEecCHHHHH
Confidence 999999999999999999 79999999 999999999999887 788888899999999999987765
No 7
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=100.00 E-value=9.6e-76 Score=545.18 Aligned_cols=196 Identities=23% Similarity=0.287 Sum_probs=174.5
Q ss_pred HHHHHHHhhCCCeEEEeeeccccCCCCCcceee-eCCCcccccccccccchhchHHHHHHHHhH-hhHhhcccccccCCC
Q psy15130 28 VLSCLVLSCLPAFLWWVQTCAMQRAKHLHCTLH-VKSNLTNANVFHVSENFCTDTQLVMAYSRY-IICIALHDAWQTRPI 105 (263)
Q Consensus 28 ~~~~~ik~~fP~l~v~~DvCLceYT~HGHCGil-~~dg~i~~Nd~tv~~~~~rla~~Al~~A~A-Ad~VAPsdmm~~~Ps 105 (263)
-++|.||+.|||++|+|||||||||+||||||+ +++|.|+ ||+|| .+|++||++||+| ||+|||||||
T Consensus 101 ~air~iK~~~pdl~vi~Dvclc~YT~hGHcGil~~~~g~id-ND~Tl----~~Lak~Al~~A~AGADiVAPSdMM----- 170 (324)
T PF00490_consen 101 RAIRAIKKAFPDLLVITDVCLCEYTSHGHCGILDDEDGEID-NDETL----ERLAKQALSHAEAGADIVAPSDMM----- 170 (324)
T ss_dssp HHHHHHHHHSTTSEEEEEE-STTTBTSSSSSEB-CTTSSBE-HHHHH----HHHHHHHHHHHHHT-SEEEE-S-------
T ss_pred HHHHHHHHhCCCcEEEEecccccccCCCceEEEECCCCeEe-cHHHH----HHHHHHHHHHHHhCCCeecccccc-----
Confidence 378999999999999999999999999999999 6899999 99998 4577999999999 9999977777
Q ss_pred cccchhHHHHHHHHHhCCCCCceeeee-eccccc--ccccc---------cccccccch---hHHHHHHHhchhcCCCee
Q psy15130 106 QTSATHIKDIRQKTANLSDTHKRLLQC-SKTLLQ--LNFLK---------HVQTNEFHC---IARCIAQARDVSQGADFL 170 (263)
Q Consensus 106 dm~DGrI~aIR~aLd~~G~~~v~im~y-~k~~ss--gPFRd---------~~~~yq~~~---~~~~~e~~~Di~EGAD~I 170 (263)
||||++||++||++||+++.||+| +||+|+ ||||+ +|++||++| .++++|+.+|++||||||
T Consensus 171 ---DGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDrktYQmdp~N~~EAlre~~~D~~EGAD~l 247 (324)
T PF00490_consen 171 ---DGRVGAIREALDEAGFSDVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREAELDIEEGADIL 247 (324)
T ss_dssp ---TTHHHHHHHHHHHTTCTTSEEEEEEEEB-SSTGHHHHHHHT-HHSSSTSTTTSB-TT-HHHHHHHHHHHHHTT-SEE
T ss_pred ---CCHHHHHHHHHHhCCCCCccEEechHHHhhhhhHhHHHHhcCCccccCcccccCCCccHHHHHHHhhhhHhhCCCEE
Confidence 999999999999999999999999 898888 99997 689999987 677899999999999999
Q ss_pred EecCCccHHHHHHHHHhhCCCCCeeecccceeeccCchhHHHHHHHHH--------HHhhccCCCCCccccccccccccc
Q psy15130 171 MVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAMEMI--------LEKIAEDPSSGSCSNVSYALRYGT 242 (263)
Q Consensus 171 mVKPg~~yLDII~~ik~~~~~~Pi~aYqERvItVSGEyami~aAa~~~--------l~kia~dp~ags~l~iSY~~l~Gp 242 (263)
|||||++|||||+++|+++ ++|+++|| |||||+|||+|+++| +|.+....++|++++|||++.+.+
T Consensus 248 MVKPal~YLDIi~~~k~~~-~~P~~aYq-----VSGEYaMikaAa~~G~~d~~~~~~Esl~~~kRAGAd~IiTYfA~~~a 321 (324)
T PF00490_consen 248 MVKPALPYLDIIRRVKERF-DLPVAAYQ-----VSGEYAMIKAAAQNGWIDEKRVVLESLLSIKRAGADIIITYFAKEAA 321 (324)
T ss_dssp EEESSGGGHHHHHHHHHHC-TS-EEEEE-----THHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHT-SEEEETTHHHHH
T ss_pred EeecchhHHHHHHHHHHhc-CCCEEEEE-----ehHHHHHHHHHHHCCCcchhhHHHHHHHHHHHcCCCEEEeecHHHHH
Confidence 9999999999999999999 99999999 999999999999987 778888899999999999987643
No 8
>KOG2794|consensus
Probab=100.00 E-value=1.5e-71 Score=510.99 Aligned_cols=196 Identities=26% Similarity=0.356 Sum_probs=180.9
Q ss_pred HHHHHHHHhhCCCeEEEeeeccccCCCCCcceeeeCCCcccccccccccchhchHHHHHHHHhH-hhHhhcccccccCCC
Q psy15130 27 LVLSCLVLSCLPAFLWWVQTCAMQRAKHLHCTLHVKSNLTNANVFHVSENFCTDTQLVMAYSRY-IICIALHDAWQTRPI 105 (263)
Q Consensus 27 ~~~~~~ik~~fP~l~v~~DvCLceYT~HGHCGil~~dg~i~~Nd~tv~~~~~rla~~Al~~A~A-Ad~VAPsdmm~~~Ps 105 (263)
.-++|+||+.||||+|+|||||||||+|||||+|.|||+|+ |++|| .|+++||++|||| ||||||||||
T Consensus 112 i~ai~~lr~~fPdL~i~cDVclc~YsshGHcGll~EdG~i~-~~esv----~rlaevAv~yAkAGa~vVapSDmm----- 181 (340)
T KOG2794|consen 112 IRAIRLLRDRFPDLVIACDVCLCEYSSHGHCGLLGEDGVIN-NDESV----HRLAEVAVSYAKAGADVVAPSDMM----- 181 (340)
T ss_pred HHHHHHHHHhCcceEEEeeeeeccccCCCccceeccccccc-CHHHH----HHHHHHHHHHHhcCCceecchHhh-----
Confidence 35799999999999999999999999999999999999999 77776 6788999999999 9999977777
Q ss_pred cccchhHHHHHHHHHhCCCCCceeeee-eccccc--ccccc---------cccccccchhHH---HHHHHhchhcCCCee
Q psy15130 106 QTSATHIKDIRQKTANLSDTHKRLLQC-SKTLLQ--LNFLK---------HVQTNEFHCIAR---CIAQARDVSQGADFL 170 (263)
Q Consensus 106 dm~DGrI~aIR~aLd~~G~~~v~im~y-~k~~ss--gPFRd---------~~~~yq~~~~~~---~~e~~~Di~EGAD~I 170 (263)
||||++||++|+++||.+|++|+| +||+|+ ||||+ +|++||++++.| ++++++|+.||||++
T Consensus 182 ---DgRV~aIk~aL~~~~l~~vsvmSYsaKfas~fyGpFR~aa~saP~fgDrkcYQlP~~~R~la~rA~erD~aEGAD~l 258 (340)
T KOG2794|consen 182 ---DGRVGAIKQALDAEGLQKVSVMSYSAKFASSFYGPFREAACSAPKFGDRKCYQLPANSRGLALRARERDVAEGADIL 258 (340)
T ss_pred ---cchHHHHHHHHHHhcccceEEEeehhhhhhccccchHHHhhcCcccCCcceeeCCCchHHHHHHHHHhhhhccCceE
Confidence 999999999999999999999999 888888 99997 689999998666 468889999999999
Q ss_pred EecCCccHHHHHHHHHhhCCCCCeeecccceeeccCchhHHHHHHHHH---HHhhccCC-----CCCccccccccccc
Q psy15130 171 MVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAMEMI---LEKIAEDP-----SSGSCSNVSYALRY 240 (263)
Q Consensus 171 mVKPg~~yLDII~~ik~~~~~~Pi~aYqERvItVSGEyami~aAa~~~---l~kia~dp-----~ags~l~iSY~~l~ 240 (263)
|||||++|||||+.+|++++++|+++|| |||||+|||+|++++ ++++..+. ++|++++|+|+..+
T Consensus 259 mVKPg~pyLDIir~~kd~~~dlpi~ayq-----VSGEyaMi~aaa~~g~~Dlk~~vmEsm~~frRAGAdiIlTYfapq 331 (340)
T KOG2794|consen 259 MVKPGLPYLDIIRLLKDKTPDLPIAAYQ-----VSGEYAMIKAAALAGMFDLKKVVMESMLGFRRAGADIILTYFAPQ 331 (340)
T ss_pred EecCCCcHHHHHHHHHhcCCCCceEEEE-----ecchHHHHHHHHhcccccHHHHHHHHHHHHHhcCCcEEEeeccHH
Confidence 9999999999999999999999999999 999999999999998 66666664 59999999998754
No 9
>KOG2191|consensus
Probab=99.56 E-value=1.7e-15 Score=143.70 Aligned_cols=92 Identities=37% Similarity=0.433 Sum_probs=81.7
Q ss_pred hHHHHHHHhchh-cCCCeeEecCCccHHHHHHHHHhh---CCCCC-eeecccceeeccCchhHHHHHHHHHHHhhccCCC
Q psy15130 153 IARCIAQARDVS-QGADFLMVKPALPYLDIISEVKSR---HPAYP-LFVYQERCITVSGHFEANEKAMEMILEKIAEDPS 227 (263)
Q Consensus 153 ~~~~~e~~~Di~-EGAD~ImVKPg~~yLDII~~ik~~---~~~~P-i~aYqERvItVSGEyami~aAa~~~l~kia~dp~ 227 (263)
-.|++++++-+. ..|+|||+|.|.+..+|+++-+.+ +|++| -..+||||||||||++.++.|++++|+|++||||
T Consensus 128 ~~r~kqikivvPNstag~iigkggAtiK~~~Eqsga~iqisPqkpt~~sLqervvt~sge~e~~~~A~~~IL~Ki~eDpq 207 (402)
T KOG2191|consen 128 PDRIKQIKIVVPNSTAGMIIGKGGATIKAIQEQSGAWIQISPQKPTGISLQERVVTVSGEPEQNMKAVSLILQKIQEDPQ 207 (402)
T ss_pred ccccceeEEeccCCcccceecCCcchHHHHHHhhCcceEecccCCCCccceeEEEEecCCHHHHHHHHHHHHHHhhcCCc
Confidence 456667777776 789999999999888888777765 45778 8899999999999999999999999999999999
Q ss_pred CCcccccccccccccch
Q psy15130 228 SGSCSNVSYALRYGTEG 244 (263)
Q Consensus 228 ags~l~iSY~~l~Gp~~ 244 (263)
+++|+|+||+.+.||++
T Consensus 208 s~scln~sya~vsGpva 224 (402)
T KOG2191|consen 208 SGSCLNISYANVSGPVA 224 (402)
T ss_pred ccceeccchhcccCccc
Confidence 99999999999999865
No 10
>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are represented here, in tandem arrangement, followed by a large spacer region, with the third domain near the C-terminal end of the protein. The poly(C) binding proteins (PCBPs) can be divided into two groups, hnRNPs K/J and the alphaCPs, which share a triple KH domain configuration and poly(C) binding specificity. They play roles in mRNA stabilization, translational activation, and translational silencing. Nova-1 and Nova-2 are nuclear RNA-binding proteins that regulate splicing. This group also contains plant proteins that seem to have two tandem repeat arrrangements, like Hen4, a protein that plays a role in AGAMOUS (AG) pre-mRNA processing and important step in plant development. In general, KH binds single-stran
Probab=91.79 E-value=0.27 Score=35.53 Aligned_cols=49 Identities=29% Similarity=0.286 Sum_probs=36.5
Q ss_pred cCCCeeEecCCccHHHHHHHHHhhCCCCC-------eeecccceeeccCchhHHHHHHHHH
Q psy15130 165 QGADFLMVKPALPYLDIISEVKSRHPAYP-------LFVYQERCITVSGHFEANEKAMEMI 218 (263)
Q Consensus 165 EGAD~ImVKPg~~yLDII~~ik~~~~~~P-------i~aYqERvItVSGEyami~aAa~~~ 218 (263)
+-++.||+|.|. .|++++++++ .. ...=.||+|+++|..+.++.|.+++
T Consensus 9 ~~vg~iIG~~G~----~i~~i~~~tg-a~I~i~~~~~~~~~~r~v~I~G~~~~v~~A~~~I 64 (65)
T cd02396 9 SQAGSIIGKGGS----TIKEIREETG-AKIRVSKSVLPGSTERVVTISGKPSAVQKALLLI 64 (65)
T ss_pred HHcCeeECCCcH----HHHHHHHHHC-CEEEEcCCCCCCCCceEEEEEeCHHHHHHHHHhh
Confidence 347889999998 7777777652 21 1134579999999999999988765
No 11
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=85.21 E-value=1.5 Score=31.77 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=36.5
Q ss_pred CCCeeEecCCccHHHHHHHHHhhCCCCCeeecccceeeccCc-hhHHHHHHHHH
Q psy15130 166 GADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGH-FEANEKAMEMI 218 (263)
Q Consensus 166 GAD~ImVKPg~~yLDII~~ik~~~~~~Pi~aYqERvItVSGE-yami~aAa~~~ 218 (263)
=.+.||+|.|. .|+++++++ +.-+-.=+++.|+|+|. .+.+++|.+++
T Consensus 12 ~ig~iIGkgG~----~ik~I~~~t-g~~I~i~~~g~v~I~G~~~~~v~~A~~~I 60 (61)
T cd02393 12 KIRDVIGPGGK----TIKKIIEET-GVKIDIEDDGTVYIAASDKEAAEKAKKMI 60 (61)
T ss_pred heeeeECCCch----HHHHHHHHH-CCEEEeCCCCEEEEEeCCHHHHHHHHHHh
Confidence 36789999998 888888887 44444445789999997 77788776653
No 12
>PRK08185 hypothetical protein; Provisional
Probab=84.54 E-value=1.2 Score=41.87 Aligned_cols=59 Identities=29% Similarity=0.384 Sum_probs=48.2
Q ss_pred Hhchh-cCCCeeEe-------------cCCccHHHHHHHHHhhCCCCCeeecccceeeccCch-hHHHHHHHHHHHhhcc
Q psy15130 160 ARDVS-QGADFLMV-------------KPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF-EANEKAMEMILEKIAE 224 (263)
Q Consensus 160 ~~Di~-EGAD~ImV-------------KPg~~yLDII~~ik~~~~~~Pi~aYqERvItVSGEy-ami~aAa~~~l~kia~ 224 (263)
..=++ .|+|.+-+ ||.+. +|+++++++.. +.|++.-. -||=. ++++.|.+.|+.|++-
T Consensus 155 ~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~-~e~l~~I~~~~-~iPLVlHG-----gsg~~~e~~~~ai~~GI~KiNi 227 (283)
T PRK08185 155 EDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQ-MDLLKEINERV-DIPLVLHG-----GSANPDAEIAESVQLGVGKINI 227 (283)
T ss_pred HHHHHhhCCCEEEeccCcccCCcCCCCCCCcC-HHHHHHHHHhh-CCCEEEEC-----CCCCCHHHHHHHHHCCCeEEEe
Confidence 33344 48999999 89987 99999999987 79999888 88854 8899999999777765
Q ss_pred C
Q psy15130 225 D 225 (263)
Q Consensus 225 d 225 (263)
.
T Consensus 228 ~ 228 (283)
T PRK08185 228 S 228 (283)
T ss_pred C
Confidence 4
No 13
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=83.09 E-value=1.8 Score=30.49 Aligned_cols=47 Identities=26% Similarity=0.274 Sum_probs=33.7
Q ss_pred CCeeEecCCccHHHHHHHHHhhCCCCCeee----cccceeeccCchhHHHHHHHHH
Q psy15130 167 ADFLMVKPALPYLDIISEVKSRHPAYPLFV----YQERCITVSGHFEANEKAMEMI 218 (263)
Q Consensus 167 AD~ImVKPg~~yLDII~~ik~~~~~~Pi~a----YqERvItVSGEyami~aAa~~~ 218 (263)
...||++-|. .|+++.+.+ +.-+.. -.++.|+++|..+.+..|.+++
T Consensus 11 ~~~iIG~~G~----~i~~i~~~~-g~~I~i~~~~~~~~~v~I~G~~~~v~~A~~~i 61 (62)
T cd02394 11 HRFIIGKKGS----NIRKIMEET-GVKIRFPDPGSKSDTITITGPKENVEKAKEEI 61 (62)
T ss_pred hhhccCCCCC----cHHHHHHHh-CCEEEcCCCCCCCCEEEEEcCHHHHHHHHHHh
Confidence 5679999998 666666665 333222 3489999999988888877654
No 14
>cd00105 KH-I K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that belong to different protein folds, but they share a single KH motif. The KH motif is folded into a beta alpha alpha beta unit. In addition to the core, type II KH domains (e.g. ribosomal protein S3) include N-terminal extension and type I KH domains (e.g. hnRNP K) contain C-terminal extension.
Probab=81.95 E-value=2.9 Score=28.91 Aligned_cols=48 Identities=29% Similarity=0.302 Sum_probs=35.1
Q ss_pred CCCeeEecCCccHHHHHHHHHhhCCCCC--eeec----ccceeeccCchhHHHHHHHHH
Q psy15130 166 GADFLMVKPALPYLDIISEVKSRHPAYP--LFVY----QERCITVSGHFEANEKAMEMI 218 (263)
Q Consensus 166 GAD~ImVKPg~~yLDII~~ik~~~~~~P--i~aY----qERvItVSGEyami~aAa~~~ 218 (263)
=++.||++-|. .|+++++++ +.. +-.. .++.|+++|....+..|...+
T Consensus 10 ~~~~vIG~~G~----~i~~I~~~s-~~~I~i~~~~~~~~~~~v~i~G~~~~v~~a~~~i 63 (64)
T cd00105 10 LVGRIIGKGGS----TIKEIREET-GAKIKIPDSGSGSEERIVTITGTPEAVEKAKELI 63 (64)
T ss_pred hcceeECCCCH----HHHHHHHHH-CCEEEEcCCCCCCCceEEEEEcCHHHHHHHHHHh
Confidence 36789999998 888888876 333 2222 379999999988888776543
No 15
>KOG2190|consensus
Probab=81.83 E-value=2.3 Score=42.91 Aligned_cols=55 Identities=29% Similarity=0.347 Sum_probs=42.9
Q ss_pred CCeeEecCCccHHHHHHHHHhhCCCC----C--eeecccceeeccCchhHHHHHHHHHHHhhccC
Q psy15130 167 ADFLMVKPALPYLDIISEVKSRHPAY----P--LFVYQERCITVSGHFEANEKAMEMILEKIAED 225 (263)
Q Consensus 167 AD~ImVKPg~~yLDII~~ik~~~~~~----P--i~aYqERvItVSGEyami~aAa~~~l~kia~d 225 (263)
.+-||+|.|. +|++|++.++-. + +-..-||-|+++||..-++.|...+..-+.+.
T Consensus 149 ~GslIGK~G~----~Ik~Ire~TgA~I~v~~~~lP~ster~V~IsG~~~av~~al~~Is~~L~~~ 209 (485)
T KOG2190|consen 149 VGSLIGKGGS----LIKEIREETGAKIRVSSDMLPNSTERAVTISGEPDAVKKALVQISSRLLEN 209 (485)
T ss_pred eeeeeccCcH----HHHHHHHhcCceEEecCCCCCcccceeEEEcCchHHHHHHHHHHHHHHHhc
Confidence 3459999997 999999986411 1 33445889999999999999999997776663
No 16
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=81.21 E-value=4.9 Score=38.84 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=69.7
Q ss_pred chHHHHHHHHhH-hhHhhcccccccCCCcccchhHHHHHHHHHhCCCC--CceeeeeecccccccccccccccccchhHH
Q psy15130 79 TDTQLVMAYSRY-IICIALHDAWQTRPIQTSATHIKDIRQKTANLSDT--HKRLLQCSKTLLQLNFLKHVQTNEFHCIAR 155 (263)
Q Consensus 79 rla~~Al~~A~A-Ad~VAPsdmm~~~Psdm~DGrI~aIR~aLd~~G~~--~v~im~y~k~~ssgPFRd~~~~yq~~~~~~ 155 (263)
.+++++-.++++ .|.|-.-...---|.-..+=|+..++++.+++.-+ .+.+..- ..+++ ..+.
T Consensus 147 ~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~---nit~~-----------~~e~ 212 (367)
T cd08205 147 ELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAP---NITGD-----------PDEL 212 (367)
T ss_pred HHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEE---EcCCC-----------HHHH
Confidence 456888889999 99997444443445555667999999999777631 1122111 11111 1223
Q ss_pred HHHHHhchhcCCCeeEecCCccHHHHHHHHHhhCCCCCeeecc
Q psy15130 156 CIAQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQ 198 (263)
Q Consensus 156 ~~e~~~Di~EGAD~ImVKPg~~yLDII~~ik~~~~~~Pi~aYq 198 (263)
++..+.-.+.|||.+|+-|-..+++.++++++.. ++|+.+.-
T Consensus 213 i~~a~~a~~~Gad~vmv~~~~~g~~~~~~l~~~~-~lpi~~H~ 254 (367)
T cd08205 213 RRRADRAVEAGANALLINPNLVGLDALRALAEDP-DLPIMAHP 254 (367)
T ss_pred HHHHHHHHHcCCCEEEEecccccccHHHHHHhcC-CCeEEEcc
Confidence 3334444668999999999999999999999875 78877664
No 17
>smart00322 KH K homology RNA-binding domain.
Probab=81.21 E-value=3.9 Score=27.43 Aligned_cols=52 Identities=25% Similarity=0.305 Sum_probs=37.5
Q ss_pred CCeeEecCCccHHHHHHHHHhhCCCCCeeec---ccceeeccCchhHHHHHHHHHHHhh
Q psy15130 167 ADFLMVKPALPYLDIISEVKSRHPAYPLFVY---QERCITVSGHFEANEKAMEMILEKI 222 (263)
Q Consensus 167 AD~ImVKPg~~yLDII~~ik~~~~~~Pi~aY---qERvItVSGEyami~aAa~~~l~ki 222 (263)
.+.+|+|-|. .|+++++.++-.-.+.- .++.++|.|+..-++.|.+.+.+.+
T Consensus 14 ~~~liG~~G~----~i~~i~~~~~~~i~~~~~~~~~~~v~i~g~~~~v~~a~~~i~~~~ 68 (69)
T smart00322 14 VGLIIGKGGS----TIKKIEEETGVKIDIPEDGSEERVVEITGPPENVEKAAELILEIL 68 (69)
T ss_pred cceeECCCch----HHHHHHHHHCCEEEECCCCCCccEEEEEcCHHHHHHHHHHHHHHh
Confidence 5789999997 77888777632221111 3589999999999998888876543
No 18
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=78.18 E-value=12 Score=33.82 Aligned_cols=104 Identities=19% Similarity=0.116 Sum_probs=64.5
Q ss_pred HHHHHHHhH-hhHhhcccccc-----------cCCCcccchhHHHHHHHHHhCCCCCceeeeeecccccccccccccccc
Q psy15130 82 QLVMAYSRY-IICIALHDAWQ-----------TRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQLNFLKHVQTNE 149 (263)
Q Consensus 82 ~~Al~~A~A-Ad~VAPsdmm~-----------~~Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~~ssgPFRd~~~~yq 149 (263)
+.+-.+.++ ++-|-+-|-.. +-|-+-+-.+|+++|++.++. .+..|++-.-....| .
T Consensus 88 ~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~--~~~~IiARTDa~~~~---------~ 156 (243)
T cd00377 88 RTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDL--PDFVIIARTDALLAG---------E 156 (243)
T ss_pred HHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhcc--CCeEEEEEcCchhcc---------C
Confidence 344455666 76666644321 113333456777777777765 677888774433333 1
Q ss_pred cchhHHHHHHHhchhcCCCeeEecCCccHHHHHHHHHhhCCCCCeeecc
Q psy15130 150 FHCIARCIAQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQ 198 (263)
Q Consensus 150 ~~~~~~~~e~~~Di~EGAD~ImVKPg~~yLDII~~ik~~~~~~Pi~aYq 198 (263)
..-.+.++-.+.=.+.|||+|++-+-. -.+-++++.+.. +.|+..|.
T Consensus 157 ~~~~eai~Ra~ay~~AGAD~v~v~~~~-~~~~~~~~~~~~-~~Pl~~~~ 203 (243)
T cd00377 157 EGLDEAIERAKAYAEAGADGIFVEGLK-DPEEIRAFAEAP-DVPLNVNM 203 (243)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCC-CHHHHHHHHhcC-CCCEEEEe
Confidence 112334444555667999999996554 557788888875 79998887
No 19
>KOG2190|consensus
Probab=68.64 E-value=7.2 Score=39.46 Aligned_cols=62 Identities=26% Similarity=0.299 Sum_probs=46.4
Q ss_pred CCeeEecCCccHHHHHHHHHhhC--C---CCCeeecccceeeccC---------chhHHHHHHHHHHHhhccCCCCCccc
Q psy15130 167 ADFLMVKPALPYLDIISEVKSRH--P---AYPLFVYQERCITVSG---------HFEANEKAMEMILEKIAEDPSSGSCS 232 (263)
Q Consensus 167 AD~ImVKPg~~yLDII~~ik~~~--~---~~Pi~aYqERvItVSG---------Eyami~aAa~~~l~kia~dp~ags~l 232 (263)
++-||+|.|. ++++++... + +.++-.-.||+||++| .-+.+-+|-.++..+..+|+....+.
T Consensus 54 vG~IIGk~G~----~vkkir~~t~s~i~i~~~~~~c~eRIiti~g~~~~~~~~~~~~al~ka~~~iv~~~~~d~~~~~d~ 129 (485)
T KOG2190|consen 54 VGSIIGKKGD----IVKKIRKETESKIRVNESLPGCPERIITITGNRVELNLSPATDALFKAFDMIVFKLEEDDEAAEDN 129 (485)
T ss_pred ceeEEccCcH----HHHHHhhcccccceeecCCCCCCcceEEEecccccccCCchHHHHHHHHHHHhhcccccccccccC
Confidence 8889999995 999999442 1 2245566799999999 88888888888888766665544433
No 20
>KOG2191|consensus
Probab=68.20 E-value=6.2 Score=39.05 Aligned_cols=61 Identities=28% Similarity=0.345 Sum_probs=47.5
Q ss_pred cCCCeeEecCCccHHHHHHHHHhhCCC----------CCeeecccceeeccCchhHHHHHHHHHHHhhccCCCCCcc
Q psy15130 165 QGADFLMVKPALPYLDIISEVKSRHPA----------YPLFVYQERCITVSGHFEANEKAMEMILEKIAEDPSSGSC 231 (263)
Q Consensus 165 EGAD~ImVKPg~~yLDII~~ik~~~~~----------~Pi~aYqERvItVSGEyami~aAa~~~l~kia~dp~ags~ 231 (263)
--|+-||+|.|. -|.+++..++. +| .--|||.-|+|.-+.|.+..+.|++||.|.||.-.-
T Consensus 48 ~AaGsIIGKGG~----ti~~lqk~tgariklSks~dfyP--GTTeRvcli~Gt~eai~av~efI~dKire~p~~~~k 118 (402)
T KOG2191|consen 48 YAAGSIIGKGGQ----TIVQLQKETGARIKLSKSKDFYP--GTTERVCLIQGTVEALNAVHEFIADKIREKPQAVAK 118 (402)
T ss_pred ccccceeccchH----HHHHHHhccCcEEEeccccccCC--CccceEEEEeccHHHHHHHHHHHHHHHHHhHHhhcC
Confidence 348889999998 56666654321 23 124999999999999999999999999999986544
No 21
>PF13014 KH_3: KH domain
Probab=67.98 E-value=6.6 Score=26.15 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=25.0
Q ss_pred CCeeEecCCccHHHHHHHHHhhCC---CCC---eeecccceeeccC
Q psy15130 167 ADFLMVKPALPYLDIISEVKSRHP---AYP---LFVYQERCITVSG 206 (263)
Q Consensus 167 AD~ImVKPg~~yLDII~~ik~~~~---~~P---i~aYqERvItVSG 206 (263)
.+.||+|-|. .|+++++.++ +.| .-.=.||.|+|+|
T Consensus 2 vg~iIG~~G~----~I~~I~~~tg~~I~i~~~~~~~~~~~~v~I~G 43 (43)
T PF13014_consen 2 VGRIIGKGGS----TIKEIREETGAKIQIPPENEPGSNERVVTITG 43 (43)
T ss_pred cCeEECCCCh----HHHHHHHHhCcEEEECCccCCCCCceEEEEEC
Confidence 4679999998 7888887753 112 2334588898887
No 22
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=63.86 E-value=3.2 Score=29.00 Aligned_cols=47 Identities=26% Similarity=0.294 Sum_probs=34.0
Q ss_pred CCeeEecCCccHHHHHHHHHhhCCCCCeeec---ccceeeccCchhHHHHHHHHH
Q psy15130 167 ADFLMVKPALPYLDIISEVKSRHPAYPLFVY---QERCITVSGHFEANEKAMEMI 218 (263)
Q Consensus 167 AD~ImVKPg~~yLDII~~ik~~~~~~Pi~aY---qERvItVSGEyami~aAa~~~ 218 (263)
.+.||+|-|. .|+++.+++ +.-+..= .+..|+++|..+.+..|.+++
T Consensus 11 ~~~iIG~~G~----~i~~I~~~t-~~~I~i~~~~~~~~v~I~G~~~~v~~A~~~I 60 (60)
T PF00013_consen 11 VGRIIGKKGS----NIKEIEEET-GVKIQIPDDDERDIVTISGSPEQVEKAKKMI 60 (60)
T ss_dssp HHHHHTGGGH----HHHHHHHHH-TSEEEEESTTEEEEEEEEESHHHHHHHHHHH
T ss_pred cCEEECCCCC----cHHHhhhhc-CeEEEEcCCCCcEEEEEEeCHHHHHHHHhhC
Confidence 4568889997 888888886 3332111 235999999999999887764
No 23
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=62.94 E-value=47 Score=30.47 Aligned_cols=114 Identities=10% Similarity=0.056 Sum_probs=72.4
Q ss_pred eeCCCcccccccccccchhchHHHHHHHHh-H-hhHhhcccccccCCCcccchhHHHHHHHHHhCCCCCceeeeeecccc
Q psy15130 60 HVKSNLTNANVFHVSENFCTDTQLVMAYSR-Y-IICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLL 137 (263)
Q Consensus 60 l~~dg~i~~Nd~tv~~~~~rla~~Al~~A~-A-Ad~VAPsdmm~~~Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~~s 137 (263)
+++||.|| .+.+. +..--+.+ + +|-|.+....--.++=..+=|...+|...+..+ .++.++.-..
T Consensus 15 f~~dg~iD------~~~~~---~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~-~~~~viagvg--- 81 (293)
T PRK04147 15 FDEDGQID------EQGLR---RLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAK-GKVKLIAQVG--- 81 (293)
T ss_pred CCCCCCcC------HHHHH---HHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhC-CCCCEEecCC---
Confidence 46778887 34444 34444555 6 787777776655566677888888888888766 5566766432
Q ss_pred cccccccccccccchhHHHHHHHhchhcCCCeeEecCCcc-------HHHHHHHHHhhCCCCCeeecc
Q psy15130 138 QLNFLKHVQTNEFHCIARCIAQARDVSQGADFLMVKPALP-------YLDIISEVKSRHPAYPLFVYQ 198 (263)
Q Consensus 138 sgPFRd~~~~yq~~~~~~~~e~~~Di~EGAD~ImVKPg~~-------yLDII~~ik~~~~~~Pi~aYq 198 (263)
..+-.+.++.++.=.+.|||.+++-|-.. ..+..+++-+.. +.|++.|+
T Consensus 82 -----------~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~-~lPv~iYn 137 (293)
T PRK04147 82 -----------SVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSA-DNPMIVYN 137 (293)
T ss_pred -----------CCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhC-CCCEEEEe
Confidence 11223333333344568999999887532 234555666665 68999998
No 24
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=59.56 E-value=52 Score=30.00 Aligned_cols=114 Identities=11% Similarity=0.053 Sum_probs=72.2
Q ss_pred eeCCCcccccccccccchhchHHHHHHHHhH-hhHhhcccccccCCCcccchhHHHHHHHHHhCCCCCceeeeeeccccc
Q psy15130 60 HVKSNLTNANVFHVSENFCTDTQLVMAYSRY-IICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQ 138 (263)
Q Consensus 60 l~~dg~i~~Nd~tv~~~~~rla~~Al~~A~A-Ad~VAPsdmm~~~Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~~ss 138 (263)
+++||.|| .+.+. +..-.+.++ +|-+.+....--.++-..+=|.+.++...+..+ .++.++.-....
T Consensus 10 f~~~g~iD------~~~~~---~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~-~~~~vi~gv~~~-- 77 (285)
T TIGR00674 10 FKEDGSVD------FAALE---KLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVN-GRVPVIAGTGSN-- 77 (285)
T ss_pred cCCCCCcC------HHHHH---HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEeCCCc--
Confidence 45678887 34444 444455567 888887777666677777888888888887755 356666553211
Q ss_pred ccccccccccccchhHHHHHHHhchhcCCCeeEecCCccH-------HHHHHHHHhhCCCCCeeecc
Q psy15130 139 LNFLKHVQTNEFHCIARCIAQARDVSQGADFLMVKPALPY-------LDIISEVKSRHPAYPLFVYQ 198 (263)
Q Consensus 139 gPFRd~~~~yq~~~~~~~~e~~~Di~EGAD~ImVKPg~~y-------LDII~~ik~~~~~~Pi~aYq 198 (263)
+..+.++.++.=.+-|||.||+-|=..| .+..+++.+.. +.|++-|+
T Consensus 78 ------------s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~-~~pi~lYn 131 (285)
T TIGR00674 78 ------------ATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEV-DLPIILYN 131 (285)
T ss_pred ------------cHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcC-CCCEEEEE
Confidence 1222323333334589999998864332 34556666666 79999998
No 25
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=58.53 E-value=55 Score=30.29 Aligned_cols=115 Identities=14% Similarity=0.122 Sum_probs=71.5
Q ss_pred eeCCCcccccccccccchhchHHHHHHHHhH-hhHhhcccccccCCCcccchhHHHHHHHHHhCCCCCceeeeeeccccc
Q psy15130 60 HVKSNLTNANVFHVSENFCTDTQLVMAYSRY-IICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQ 138 (263)
Q Consensus 60 l~~dg~i~~Nd~tv~~~~~rla~~Al~~A~A-Ad~VAPsdmm~~~Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~~ss 138 (263)
+++||.|| .+.+.+ ..--+.+. +|-+-+....--.++-..|=|...+|...+... .++.++.-...
T Consensus 12 f~~dg~iD------~~~l~~---lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~-g~~pvi~gv~~--- 78 (294)
T TIGR02313 12 FKRNGDID------EEALRE---LIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIA-GRIPFAPGTGA--- 78 (294)
T ss_pred cCCCCCcC------HHHHHH---HHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-CCCcEEEECCc---
Confidence 46788887 345453 33444456 777777666666677778889999998888765 46777754321
Q ss_pred ccccccccccccchhHHHHHHHhchhcCCCeeEecCCc-------cHHHHHHHHHhhCCCCCeeecc
Q psy15130 139 LNFLKHVQTNEFHCIARCIAQARDVSQGADFLMVKPAL-------PYLDIISEVKSRHPAYPLFVYQ 198 (263)
Q Consensus 139 gPFRd~~~~yq~~~~~~~~e~~~Di~EGAD~ImVKPg~-------~yLDII~~ik~~~~~~Pi~aYq 198 (263)
.+-.+.++.++.=.+-|||.+|+-|=. ...+..+++.+..++.|++.|+
T Consensus 79 -----------~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn 134 (294)
T TIGR02313 79 -----------LNHDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYN 134 (294)
T ss_pred -----------chHHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEe
Confidence 112223222222244699998887721 1344555666665579999998
No 26
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=57.56 E-value=73 Score=28.74 Aligned_cols=114 Identities=11% Similarity=0.095 Sum_probs=71.1
Q ss_pred eeCCCcccccccccccchhchHHHHHHHHhH-hhHhhcccccccCCCcccchhHHHHHHHHHhCCCCCceeeeeeccccc
Q psy15130 60 HVKSNLTNANVFHVSENFCTDTQLVMAYSRY-IICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQ 138 (263)
Q Consensus 60 l~~dg~i~~Nd~tv~~~~~rla~~Al~~A~A-Ad~VAPsdmm~~~Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~~ss 138 (263)
+++||.|| .+.+. +..-.+.++ +|-+.+....--.++-+.+=|.+.++...+..+ .++.++.-....
T Consensus 12 f~~dg~iD------~~~~~---~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~-~~~~vi~gv~~~-- 79 (284)
T cd00950 12 FKDDGSVD------FDALE---RLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVN-GRVPVIAGTGSN-- 79 (284)
T ss_pred cCCCCCcC------HHHHH---HHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhC-CCCcEEeccCCc--
Confidence 34667787 34433 444455567 888887777767778888889998888887765 455666442211
Q ss_pred ccccccccccccchhHHHHHHHhchhcCCCeeEecCCcc-------HHHHHHHHHhhCCCCCeeecc
Q psy15130 139 LNFLKHVQTNEFHCIARCIAQARDVSQGADFLMVKPALP-------YLDIISEVKSRHPAYPLFVYQ 198 (263)
Q Consensus 139 gPFRd~~~~yq~~~~~~~~e~~~Di~EGAD~ImVKPg~~-------yLDII~~ik~~~~~~Pi~aYq 198 (263)
.. .+.++.++.=.+-|||.||+-|-.. ..+..+++-+.. +.|++-|+
T Consensus 80 -~~-----------~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~-~~pi~lYn 133 (284)
T cd00950 80 -NT-----------AEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEAT-DLPVILYN 133 (284)
T ss_pred -cH-----------HHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcC-CCCEEEEE
Confidence 11 2222222222346999888775432 345566666665 79999998
No 27
>KOG2193|consensus
Probab=55.73 E-value=6.8 Score=40.02 Aligned_cols=61 Identities=25% Similarity=0.213 Sum_probs=48.7
Q ss_pred CCeeEecCCccHHHHHHHHHhhC--CCCCeeecccceeeccCchhHHHHHHHHHHHhhccCCC
Q psy15130 167 ADFLMVKPALPYLDIISEVKSRH--PAYPLFVYQERCITVSGHFEANEKAMEMILEKIAEDPS 227 (263)
Q Consensus 167 AD~ImVKPg~~yLDII~~ik~~~--~~~Pi~aYqERvItVSGEyami~aAa~~~l~kia~dp~ 227 (263)
-+.||+|-|++..||-+..+.+. -++--..-.||+|||-|-.+..-+|++++|+-+..+..
T Consensus 210 vgaIIGkeG~TIknItkqTqsriD~hrken~Gaaek~itvh~tpEg~s~Ac~~ILeimqkEA~ 272 (584)
T KOG2193|consen 210 VGAIIGKEGATIKNITKQTQSRIDVHRKENAGAAEKIITVHSTPEGTSKACKMILEIMQKEAV 272 (584)
T ss_pred eEEEecCCCccccCcchhhhheeeeeecccCCcccCceEEecCccchHHHHHHHHHHHHHhhh
Confidence 67899999999999988877662 12223355799999999999999999999887776654
No 28
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=54.42 E-value=82 Score=28.23 Aligned_cols=115 Identities=11% Similarity=0.092 Sum_probs=71.7
Q ss_pred eeCCCcccccccccccchhchHHHHHHHHhH-hhHhhcccccccCCCcccchhHHHHHHHHHhCCCCCceeeeeeccccc
Q psy15130 60 HVKSNLTNANVFHVSENFCTDTQLVMAYSRY-IICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQ 138 (263)
Q Consensus 60 l~~dg~i~~Nd~tv~~~~~rla~~Al~~A~A-Ad~VAPsdmm~~~Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~~ss 138 (263)
+++||.||- +.+. +..--+.+. +|-|.+....--.++-..+=|...++...+..+ .++.++.-....
T Consensus 9 f~~dg~iD~------~~~~---~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~-~~~~vi~gv~~~-- 76 (281)
T cd00408 9 FTADGEVDL------DALR---RLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA-GRVPVIAGVGAN-- 76 (281)
T ss_pred cCCCCCcCH------HHHH---HHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEecCCc--
Confidence 456777872 3433 455555566 888887777666677777888888888888766 456666553211
Q ss_pred ccccccccccccchhHHHHHHHhchhcCCCeeEecCCcc-------HHHHHHHHHhhCCCCCeeeccc
Q psy15130 139 LNFLKHVQTNEFHCIARCIAQARDVSQGADFLMVKPALP-------YLDIISEVKSRHPAYPLFVYQE 199 (263)
Q Consensus 139 gPFRd~~~~yq~~~~~~~~e~~~Di~EGAD~ImVKPg~~-------yLDII~~ik~~~~~~Pi~aYqE 199 (263)
.-.+.++.++.=.+-|||.||+-|-.. +.+..+++.+.. +.|++-|+-
T Consensus 77 ------------~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~-~~pi~iYn~ 131 (281)
T cd00408 77 ------------STREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADAS-DLPVILYNI 131 (281)
T ss_pred ------------cHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC-CCCEEEEEC
Confidence 112232222233345999998877432 334556666665 799999983
No 29
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=52.04 E-value=1.1e+02 Score=28.04 Aligned_cols=119 Identities=8% Similarity=0.023 Sum_probs=70.6
Q ss_pred eeCCCcccccccccccchhchHHHHHHHHhHhhHhhcccccccCCCcccchhHHHHHHHHHhCCCCCceeeeeecccccc
Q psy15130 60 HVKSNLTNANVFHVSENFCTDTQLVMAYSRYIICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQL 139 (263)
Q Consensus 60 l~~dg~i~~Nd~tv~~~~~rla~~Al~~A~AAd~VAPsdmm~~~Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~~ssg 139 (263)
+++||.|| .+.+.++.+-.+... -+|-|.+....--.|+-+.+=|...+|...+..+ .++.++.-... .
T Consensus 12 f~~dg~iD------~~~~~~~i~~l~~~~-Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~-~~~~viagv~~---~ 80 (288)
T cd00954 12 FDENGEIN------EDVLRAIVDYLIEKQ-GVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAK-GKVTLIAHVGS---L 80 (288)
T ss_pred CCCCCCCC------HHHHHHHHHHHHhcC-CCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-CCCeEEeccCC---C
Confidence 45677887 355554444433310 2667777777666677777888888888887765 35666654221 1
Q ss_pred cccccccccccchhHHHHHHHhchhcCCCeeEecCCcc-------HHHHHHHHHhhCCCCCeeecccc
Q psy15130 140 NFLKHVQTNEFHCIARCIAQARDVSQGADFLMVKPALP-------YLDIISEVKSRHPAYPLFVYQER 200 (263)
Q Consensus 140 PFRd~~~~yq~~~~~~~~e~~~Di~EGAD~ImVKPg~~-------yLDII~~ik~~~~~~Pi~aYqER 200 (263)
+-.+.+..++.=.+-|||.+|+-|=.. ..+..+++-+..+++|++.|+-+
T Consensus 81 -----------~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P 137 (288)
T cd00954 81 -----------NLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIP 137 (288)
T ss_pred -----------CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 122232333333568999998755322 34555566666546899999844
No 30
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=50.77 E-value=55 Score=30.09 Aligned_cols=43 Identities=9% Similarity=0.261 Sum_probs=31.5
Q ss_pred chhHHHHHHHhchhcCCCeeEe-----cCCcc----------HHHHHHHHHhhCCCCCe
Q psy15130 151 HCIARCIAQARDVSQGADFLMV-----KPALP----------YLDIISEVKSRHPAYPL 194 (263)
Q Consensus 151 ~~~~~~~e~~~Di~EGAD~ImV-----KPg~~----------yLDII~~ik~~~~~~Pi 194 (263)
+....+..+..-+++|||+|=+ .||.. ...+|+.+++.+ +.|+
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~-~~pl 79 (257)
T cd00739 22 SLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL-DVLI 79 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCcE
Confidence 4455666777788999999977 57765 566788888775 5663
No 31
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=49.48 E-value=36 Score=30.38 Aligned_cols=111 Identities=12% Similarity=0.093 Sum_probs=64.8
Q ss_pred HHHHHhhCCCeEEEeeeccccCCCCCccee--eeCCCcccccccccccchhchHHHHHHHHhH-hhHhhcccccccCCCc
Q psy15130 30 SCLVLSCLPAFLWWVQTCAMQRAKHLHCTL--HVKSNLTNANVFHVSENFCTDTQLVMAYSRY-IICIALHDAWQTRPIQ 106 (263)
Q Consensus 30 ~~~ik~~fP~l~v~~DvCLceYT~HGHCGi--l~~dg~i~~Nd~tv~~~~~rla~~Al~~A~A-Ad~VAPsdmm~~~Psd 106 (263)
.+.+.+.+|+++| --|.|.-|---+ |.+.| |.-|-=+| --++||...++| |++|||-
T Consensus 70 a~~l~~~~~~~~i-----KIP~T~~gl~ai~~L~~~g-i~v~~T~V-----~s~~Qa~~Aa~AGA~yvsP~--------- 129 (211)
T cd00956 70 ARKLASLGGNVVV-----KIPVTEDGLKAIKKLSEEG-IKTNVTAI-----FSAAQALLAAKAGATYVSPF--------- 129 (211)
T ss_pred HHHHHHhCCCEEE-----EEcCcHhHHHHHHHHHHcC-CceeeEEe-----cCHHHHHHHHHcCCCEEEEe---------
Confidence 4555666665444 235555443222 44555 32233333 234799999999 9999986
Q ss_pred ccchh-----------HHHHHHHHHhCCCCCceeeeeecccccccccccccccccchhHHHHHHHhchhcCCCeeEecCC
Q psy15130 107 TSATH-----------IKDIRQKTANLSDTHKRLLQCSKTLLQLNFLKHVQTNEFHCIARCIAQARDVSQGADFLMVKPA 175 (263)
Q Consensus 107 m~DGr-----------I~aIR~aLd~~G~~~v~im~y~k~~ssgPFRd~~~~yq~~~~~~~~e~~~Di~EGAD~ImVKPg 175 (263)
=|| |+.+++.+.+.|+.-+.+.++.+ ++ .|+..=...|||++-+-|.
T Consensus 130 --vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r----------------~~----~ei~~a~~~Gad~vTv~~~ 187 (211)
T cd00956 130 --VGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIR----------------NP----QHVIEAALAGADAITLPPD 187 (211)
T ss_pred --cChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccC----------------CH----HHHHHHHHcCCCEEEeCHH
Confidence 556 56667777777753333333222 11 3444555689999998886
Q ss_pred ccHHHHHHHHHh
Q psy15130 176 LPYLDIISEVKS 187 (263)
Q Consensus 176 ~~yLDII~~ik~ 187 (263)
+++++.+
T Consensus 188 -----vl~~l~~ 194 (211)
T cd00956 188 -----VLEQLLK 194 (211)
T ss_pred -----HHHHHhc
Confidence 6666544
No 32
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=49.44 E-value=1.8e+02 Score=25.34 Aligned_cols=152 Identities=14% Similarity=0.089 Sum_probs=81.1
Q ss_pred cccccccchhchHHHHHHHHhHhhHhhcccccccCCCcccchhHHHHHHHHHhCCCCCceeeeeeccccccccccccccc
Q psy15130 69 NVFHVSENFCTDTQLVMAYSRYIICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQLNFLKHVQTN 148 (263)
Q Consensus 69 Nd~tv~~~~~rla~~Al~~A~AAd~VAPsdmm~~~Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~~ssgPFRd~~~~y 148 (263)
.+.|. +.+.++.++|..|--++-||. =|.++..|+.|...+ +.....-. -|| +
T Consensus 12 p~~t~-~~i~~~~~~a~~~~~~av~v~-------------p~~v~~~~~~l~~~~-----~~v~~~~~--fp~------g 64 (203)
T cd00959 12 PDATE-EDIRKLCDEAKEYGFAAVCVN-------------PCFVPLAREALKGSG-----VKVCTVIG--FPL------G 64 (203)
T ss_pred CCCCH-HHHHHHHHHHHHcCCCEEEEc-------------HHHHHHHHHHcCCCC-----cEEEEEEe--cCC------C
Confidence 45554 566666677777542255555 346777777774422 21111100 022 2
Q ss_pred ccchhHHHHHHHhchhcCCCeeEec--CC-------ccHHHHHHHHHhhCCCCCeeecccceeeccCch--hHHHHHHHH
Q psy15130 149 EFHCIARCIAQARDVSQGADFLMVK--PA-------LPYLDIISEVKSRHPAYPLFVYQERCITVSGHF--EANEKAMEM 217 (263)
Q Consensus 149 q~~~~~~~~e~~~Di~EGAD~ImVK--Pg-------~~yLDII~~ik~~~~~~Pi~aYqERvItVSGEy--ami~aAa~~ 217 (263)
+.+......|++.=+..|||-|-+= .| -..++-|.++++...+.|+-+-- =.|+. +.+..|++.
T Consensus 65 ~~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~-----e~~~l~~~~i~~a~ri 139 (203)
T cd00959 65 ATTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVIL-----ETGLLTDEEIIKACEI 139 (203)
T ss_pred CCcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEE-----ecCCCCHHHHHHHHHH
Confidence 2223334456777777899986542 22 22455666667766457744322 23433 466666665
Q ss_pred HHHhhccCCCCCcccccccccccccch---HHHhHhhhhcccccc
Q psy15130 218 ILEKIAEDPSSGSCSNVSYALRYGTEG---WGELLHRFTRTSVGF 259 (263)
Q Consensus 218 ~l~kia~dp~ags~l~iSY~~l~Gp~~---~~~~~~~~~~~~~~~ 259 (263)
.. .+|++...+..|...+.+ --+++.+..+..+++
T Consensus 140 a~-------e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~~~v~i 177 (203)
T cd00959 140 AI-------EAGADFIKTSTGFGPGGATVEDVKLMKEAVGGRVGV 177 (203)
T ss_pred HH-------HhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCceE
Confidence 54 368888888755432222 336666665544444
No 33
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=46.99 E-value=76 Score=25.81 Aligned_cols=47 Identities=23% Similarity=0.210 Sum_probs=32.0
Q ss_pred HHHHHHhchhcCCCeeEecCCccH---------HHHHHHHHhhC-CCCCeeecccce
Q psy15130 155 RCIAQARDVSQGADFLMVKPALPY---------LDIISEVKSRH-PAYPLFVYQERC 201 (263)
Q Consensus 155 ~~~e~~~Di~EGAD~ImVKPg~~y---------LDII~~ik~~~-~~~Pi~aYqERv 201 (263)
...+++.=.+-|||.+++-|-..+ .+.++++.+.. .+.|+..|+..-
T Consensus 67 ~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~ 123 (201)
T cd00945 67 KVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETR 123 (201)
T ss_pred HHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECC
Confidence 334445555569999998764322 57778888874 379999999433
No 34
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=46.68 E-value=1.3e+02 Score=27.58 Aligned_cols=113 Identities=11% Similarity=0.039 Sum_probs=68.4
Q ss_pred eeCCCcccccccccccchhchHHHHHHHHhH-hhHhhcccccccCCCcccchhHHHHHHHHHhCCCCCceeeeeeccccc
Q psy15130 60 HVKSNLTNANVFHVSENFCTDTQLVMAYSRY-IICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQ 138 (263)
Q Consensus 60 l~~dg~i~~Nd~tv~~~~~rla~~Al~~A~A-Ad~VAPsdmm~~~Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~~ss 138 (263)
+++||.||. +.+. +..-.+.+. +|-+.+....--.++=..+=|...+|...+..+ .++.++.-...
T Consensus 12 f~~dg~iD~------~~l~---~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~-~~~pvi~gv~~--- 78 (289)
T cd00951 12 FDADGSFDE------DAYR---AHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETA-GRVPVLAGAGY--- 78 (289)
T ss_pred CCCCCCcCH------HHHH---HHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-CCCCEEEecCC---
Confidence 356788872 4444 444455566 777776666555566667778888888888764 46677754321
Q ss_pred ccccccccccccchhHHHHHHHhchhcCCCeeEecCCcc-------HHHHHHHHHhhCCCCCeeecc
Q psy15130 139 LNFLKHVQTNEFHCIARCIAQARDVSQGADFLMVKPALP-------YLDIISEVKSRHPAYPLFVYQ 198 (263)
Q Consensus 139 gPFRd~~~~yq~~~~~~~~e~~~Di~EGAD~ImVKPg~~-------yLDII~~ik~~~~~~Pi~aYq 198 (263)
-.+ +.+..++.=.+-|||.+|+-|-.. ..+..+++.+.+ +.|++.|+
T Consensus 79 -~t~-----------~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~-~~pi~lYn 132 (289)
T cd00951 79 -GTA-----------TAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKST-DLGVIVYN 132 (289)
T ss_pred -CHH-----------HHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcC-CCCEEEEe
Confidence 112 222222333457899988876432 234455555555 68999998
No 35
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein. This family of proteins is universal among the 41 archaeal genomes analyzed in and is not observed outside of the archaea. The proteins contain a single KH domain (pfam00013) which is likely to confer the ability to bind RNA.
Probab=46.17 E-value=34 Score=29.56 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=41.4
Q ss_pred CCeeEecCCccHHHHHHHHHhhCCCCCeeecccceeeccCchhHHHHHHHHHHHhhccCCCC
Q psy15130 167 ADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAMEMILEKIAEDPSS 228 (263)
Q Consensus 167 AD~ImVKPg~~yLDII~~ik~~~~~~Pi~aYqERvItVSGEyami~aAa~~~l~kia~dp~a 228 (263)
.+.||+|-|. .++.+.+.+ ..-+..+ ++.|++.|.+..++.|-+++-. +..+..+
T Consensus 100 ~griIG~~G~----t~~~ie~~t-~~~i~i~-~~~v~i~G~~~~~~~A~~~i~~-li~~~~~ 154 (172)
T TIGR03665 100 KGRIIGEGGK----TRRIIEELT-GVSISVY-GKTVGIIGDPEQVQIAREAIEM-LIEGAPH 154 (172)
T ss_pred HhhhcCCCcH----HHHHHHHHH-CCeEEEc-CCEEEEECCHHHHHHHHHHHHH-HHcCCCC
Confidence 7889999997 888888887 4554444 4889999999999988777744 3344443
No 36
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=45.06 E-value=2.1e+02 Score=25.88 Aligned_cols=154 Identities=12% Similarity=0.026 Sum_probs=88.4
Q ss_pred cccccccchhchHHHHHHHHhHhhHhhcccccccCCCcccchhHHHHHHHHHhCCCCCceeeeeeccccccccccccccc
Q psy15130 69 NVFHVSENFCTDTQLVMAYSRYIICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQLNFLKHVQTN 148 (263)
Q Consensus 69 Nd~tv~~~~~rla~~Al~~A~AAd~VAPsdmm~~~Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~~ssgPFRd~~~~y 148 (263)
.+.|. +.+.++.++|..|-=++-||.|+ .|...|+.|... ++.+-.-.-| || +
T Consensus 13 p~~t~-~~i~~lc~~A~~~~~~avcv~p~-------------~v~~a~~~l~~~---~v~v~tVigF----P~------G 65 (211)
T TIGR00126 13 ADTTE-EDIITLCAQAKTYKFAAVCVNPS-------------YVPLAKELLKGT---EVRICTVVGF----PL------G 65 (211)
T ss_pred CCCCH-HHHHHHHHHHHhhCCcEEEeCHH-------------HHHHHHHHcCCC---CCeEEEEeCC----CC------C
Confidence 55664 66677779999885558999977 789999998532 2222211221 43 3
Q ss_pred ccchhHHHHHHHhchhcCCCeeEecC------CccHHHHH---HHHHhhCCCCCeeecccceeeccCchhHHHHHHHHHH
Q psy15130 149 EFHCIARCIAQARDVSQGADFLMVKP------ALPYLDII---SEVKSRHPAYPLFVYQERCITVSGHFEANEKAMEMIL 219 (263)
Q Consensus 149 q~~~~~~~~e~~~Di~EGAD~ImVKP------g~~yLDII---~~ik~~~~~~Pi~aYqERvItVSGEyami~aAa~~~l 219 (263)
+........|++.=++.|||-|-+=+ ...|-.+. +++++...+.|+-+--|... .+. +.+..|++...
T Consensus 66 ~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~-L~~--~ei~~a~~ia~ 142 (211)
T TIGR00126 66 ASTTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGL-LTD--EEIRKACEICI 142 (211)
T ss_pred CCcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCC-CCH--HHHHHHHHHHH
Confidence 44445555677777888988643221 12344444 44445554677665554443 333 34445665554
Q ss_pred HhhccCCCCCcccccccccccccch---HHHhHhhhhcccccc
Q psy15130 220 EKIAEDPSSGSCSNVSYALRYGTEG---WGELLHRFTRTSVGF 259 (263)
Q Consensus 220 ~kia~dp~ags~l~iSY~~l~Gp~~---~~~~~~~~~~~~~~~ 259 (263)
.+|++...+..|-.++.+ --+++++..+..++.
T Consensus 143 -------eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~~v~I 178 (211)
T TIGR00126 143 -------DAGADFVKTSTGFGAGGATVEDVRLMRNTVGDTIGV 178 (211)
T ss_pred -------HhCCCEEEeCCCCCCCCCCHHHHHHHHHHhccCCeE
Confidence 368888877644332222 335666666655544
No 37
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.59 E-value=42 Score=29.21 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=33.7
Q ss_pred HHHHhchhcCCCeeEecCCccH--HHHHHHHHhhCCCCCeeec
Q psy15130 157 IAQARDVSQGADFLMVKPALPY--LDIISEVKSRHPAYPLFVY 197 (263)
Q Consensus 157 ~e~~~Di~EGAD~ImVKPg~~y--LDII~~ik~~~~~~Pi~aY 197 (263)
.|+..-.+.|||.|=..|..+. ++.+++++..+++.|+++-
T Consensus 116 ~e~~~A~~~Gadyv~~Fpt~~~~G~~~l~~~~~~~~~ipvvai 158 (187)
T PRK07455 116 TEIVTAWQAGASCVKVFPVQAVGGADYIKSLQGPLGHIPLIPT 158 (187)
T ss_pred HHHHHHHHCCCCEEEECcCCcccCHHHHHHHHhhCCCCcEEEe
Confidence 4666667799999999998765 7999999998877897754
No 38
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=43.37 E-value=75 Score=29.06 Aligned_cols=86 Identities=13% Similarity=0.045 Sum_probs=55.1
Q ss_pred hHHHHHHHHHhCCCCCceeeeeecccccccccc-------------------cccccccchhHHHHHHHhch-hcCCCee
Q psy15130 111 HIKDIRQKTANLSDTHKRLLQCSKTLLQLNFLK-------------------HVQTNEFHCIARCIAQARDV-SQGADFL 170 (263)
Q Consensus 111 rI~aIR~aLd~~G~~~v~im~y~k~~ssgPFRd-------------------~~~~yq~~~~~~~~e~~~Di-~EGAD~I 170 (263)
-..++.++|...|...+.++..|-..-+-++|+ +.+...-++ +.+.+..+.+ ..+||.|
T Consensus 107 ~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p-~~i~~~~~~~~~~~aDAi 185 (239)
T TIGR02990 107 PSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISP-DCIVEAALAAFDPDADAL 185 (239)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCH-HHHHHHHHHhcCCCCCEE
Confidence 356777888888888888888776555533332 112222233 3334444444 4789986
Q ss_pred Eec-CCccHHHHHHHHHhhCCCCCeeecc
Q psy15130 171 MVK-PALPYLDIISEVKSRHPAYPLFVYQ 198 (263)
Q Consensus 171 mVK-Pg~~yLDII~~ik~~~~~~Pi~aYq 198 (263)
.+- =++.-+|+|.++-++. ++|++.=+
T Consensus 186 fisCTnLrt~~vi~~lE~~l-GkPVlsSN 213 (239)
T TIGR02990 186 FLSCTALRAATCAQRIEQAI-GKPVVTSN 213 (239)
T ss_pred EEeCCCchhHHHHHHHHHHH-CCCEEEHH
Confidence 554 4677899999999988 79976443
No 39
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=43.19 E-value=1e+02 Score=30.12 Aligned_cols=106 Identities=14% Similarity=0.108 Sum_probs=70.7
Q ss_pred chHHHHHHHHhH-hhHhhcccccccCCCcccchhHHHHHHHHHhCCCCCceeeeeecccccccccccccccccchhHHHH
Q psy15130 79 TDTQLVMAYSRY-IICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQLNFLKHVQTNEFHCIARCI 157 (263)
Q Consensus 79 rla~~Al~~A~A-Ad~VAPsdmm~~~Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~~ssgPFRd~~~~yq~~~~~~~~ 157 (263)
.+++++-.+++. .|.|-.-...---|.--.+-|+.+.+++.+++.-+.-.-..|+. .-+++ +.+..+
T Consensus 142 ~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~-Nita~-----------~~em~~ 209 (364)
T cd08210 142 ELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAP-NVTGP-----------PTQLLE 209 (364)
T ss_pred HHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEE-ecCCC-----------HHHHHH
Confidence 356888888999 99997555554456666788999999999887752111122221 11121 112222
Q ss_pred HHHhchhcCCCeeEecCCccHHHHHHHHHhhCCC-CCeeec
Q psy15130 158 AQARDVSQGADFLMVKPALPYLDIISEVKSRHPA-YPLFVY 197 (263)
Q Consensus 158 e~~~Di~EGAD~ImVKPg~~yLDII~~ik~~~~~-~Pi~aY 197 (263)
..+.-.+.||+.+|+-|....++.++.+++.. . +|+.+.
T Consensus 210 ra~~a~~~Ga~~vMv~~~~~G~~~~~~l~~~~-~~l~i~aH 249 (364)
T cd08210 210 RARFAKEAGAGGVLIAPGLTGLDTFRELAEDF-DFLPILAH 249 (364)
T ss_pred HHHHHHHcCCCEEEeecccchHHHHHHHHhcC-CCcEEEEc
Confidence 23333469999999999999999999999876 6 887766
No 40
>PRK15063 isocitrate lyase; Provisional
Probab=42.87 E-value=82 Score=31.87 Aligned_cols=90 Identities=17% Similarity=0.240 Sum_probs=57.9
Q ss_pred CCcccchhHHHHHHHHHhCCCCCceeeeeeccccc-----------ccccc----cccccccc-----hhHHHHHHHhch
Q psy15130 104 PIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQ-----------LNFLK----HVQTNEFH-----CIARCIAQARDV 163 (263)
Q Consensus 104 Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~~ss-----------gPFRd----~~~~yq~~-----~~~~~~e~~~Di 163 (263)
|.+-+=.||.++|.+-+..|.. ..|++-.-...+ .||-. ....|... ..+|.++ -
T Consensus 200 p~~e~i~kL~AAr~A~d~~g~~-~vIiARTDA~aa~li~s~~d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~A----Y 274 (428)
T PRK15063 200 PTQEAIRKLVAARLAADVMGVP-TLVIARTDAEAADLLTSDVDERDRPFITGERTAEGFYRVKAGIEQAIARGLA----Y 274 (428)
T ss_pred cHHHHHHHHHHHHHHHHhcCCC-eEEEEECCccccccccccccccccccccCCCccccccccccCHHHHHHHHHH----H
Confidence 5555567999999999988854 788888433221 24432 11223322 2344322 2
Q ss_pred hcCCCeeEecCCccHHHHHHHHHhhCC-CCC--eeecc
Q psy15130 164 SQGADFLMVKPALPYLDIISEVKSRHP-AYP--LFVYQ 198 (263)
Q Consensus 164 ~EGAD~ImVKPg~~yLDII~~ik~~~~-~~P--i~aYq 198 (263)
.+|||+|-+..+.+-++-++++.+... ..| +.+|+
T Consensus 275 a~GAD~iw~Et~~~d~ee~~~fa~~v~~~~P~~~layn 312 (428)
T PRK15063 275 APYADLIWCETSTPDLEEARRFAEAIHAKFPGKLLAYN 312 (428)
T ss_pred hcCCCEEEeCCCCCCHHHHHHHHHhhcccCccceeecC
Confidence 349999999988899999999887752 136 77776
No 41
>KOG2192|consensus
Probab=41.74 E-value=53 Score=32.10 Aligned_cols=65 Identities=20% Similarity=0.316 Sum_probs=51.5
Q ss_pred hcCCCeeEecCCccHHHHHHHHHhhCCCC-Ce---ee--cccceeeccCchhHHHHHHHHHHHhhccCCCCCccc
Q psy15130 164 SQGADFLMVKPALPYLDIISEVKSRHPAY-PL---FV--YQERCITVSGHFEANEKAMEMILEKIAEDPSSGSCS 232 (263)
Q Consensus 164 ~EGAD~ImVKPg~~yLDII~~ik~~~~~~-Pi---~a--YqERvItVSGEyami~aAa~~~l~kia~dp~ags~l 232 (263)
+.-|+-||+.-|+ -|++++|+++.. .+ ++ .-.||+-++||..-+..-.+.+|+-+.+.|-+|+..
T Consensus 131 qs~ag~iigrngs----kikelrekcsarlkift~c~p~stdrv~l~~g~~k~v~~~i~~il~~i~e~pikgsa~ 201 (390)
T KOG2192|consen 131 QSLAGGIIGRNGS----KIKELREKCSARLKIFTECCPHSTDRVVLIGGKPKRVVECIKIILDLISESPIKGSAQ 201 (390)
T ss_pred hhhccceecccch----hHHHHHHhhhhhhhhhhccCCCCcceEEEecCCcchHHHHHHHHHHHhhcCCcCCcCC
Confidence 4669999999998 899999985321 11 11 237999999999999989999999999999887753
No 42
>KOG2192|consensus
Probab=41.60 E-value=42 Score=32.82 Aligned_cols=59 Identities=19% Similarity=0.201 Sum_probs=44.8
Q ss_pred cCCCeeEecCCccHHHHHHHHHhhCC---CCCeeecccceeeccCchhHHHHHHHHHHHhhccCCC
Q psy15130 165 QGADFLMVKPALPYLDIISEVKSRHP---AYPLFVYQERCITVSGHFEANEKAMEMILEKIAEDPS 227 (263)
Q Consensus 165 EGAD~ImVKPg~~yLDII~~ik~~~~---~~Pi~aYqERvItVSGEyami~aAa~~~l~kia~dp~ 227 (263)
..|+.||+|.|- .|++++..|. ++|-..=-|||.|||..-+.+-.-.+.++-.+-+.++
T Consensus 57 k~agavigkgg~----nik~lr~d~na~v~vpds~~peri~tisad~~ti~~ilk~iip~lee~f~ 118 (390)
T KOG2192|consen 57 KNAGAVIGKGGK----NIKALRTDYNASVSVPDSSGPERILTISADIETIGEILKKIIPTLEEGFQ 118 (390)
T ss_pred ccccceeccccc----cHHHHhhhccceeeccCCCCCceeEEEeccHHHHHHHHHHHhhhhhhCCC
Confidence 679999999997 8888888762 3455555699999999988887766667655555544
No 43
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=41.18 E-value=39 Score=24.64 Aligned_cols=50 Identities=14% Similarity=0.348 Sum_probs=37.7
Q ss_pred cCCCeeEec---CCccHHHHHHHHHhhCCCCCeeecccceeeccCchhHHHHHHHHHH
Q psy15130 165 QGADFLMVK---PALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAMEMIL 219 (263)
Q Consensus 165 EGAD~ImVK---Pg~~yLDII~~ik~~~~~~Pi~aYqERvItVSGEyami~aAa~~~l 219 (263)
...|++++- |+..-+++++.+++..++.|++.+. -..+.+....+.+.|.
T Consensus 42 ~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t-----~~~~~~~~~~~~~~g~ 94 (112)
T PF00072_consen 42 HPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVT-----DEDDSDEVQEALRAGA 94 (112)
T ss_dssp STESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEE-----SSTSHHHHHHHHHTTE
T ss_pred cCceEEEEEeeeccccccccccccccccccccEEEec-----CCCCHHHHHHHHHCCC
Confidence 348898877 8889999999999987667777655 5566667776666654
No 44
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=40.49 E-value=60 Score=30.72 Aligned_cols=49 Identities=12% Similarity=0.106 Sum_probs=38.3
Q ss_pred cccccchhHHHHHHHhchh-cCCCeeEecCCccHHHHHHHHHhhCCCCCeee
Q psy15130 146 QTNEFHCIARCIAQARDVS-QGADFLMVKPALPYLDIISEVKSRHPAYPLFV 196 (263)
Q Consensus 146 ~~yq~~~~~~~~e~~~Di~-EGAD~ImVKPg~~yLDII~~ik~~~~~~Pi~a 196 (263)
.+||.++.+.++...+=+. .|||.|-...|....++|+.+-+. ..|+++
T Consensus 87 ~sy~~s~e~av~nA~rl~ke~GadaVKlEGg~~~~~~i~~l~~~--GIPV~g 136 (261)
T PF02548_consen 87 GSYQASPEQAVRNAGRLMKEAGADAVKLEGGAEIAETIKALVDA--GIPVMG 136 (261)
T ss_dssp TSSTSSHHHHHHHHHHHHHTTT-SEEEEEBSGGGHHHHHHHHHT--T--EEE
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEeccchhHHHHHHHHHHC--CCcEEE
Confidence 5688888777777777777 899999999999999999999985 477554
No 45
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=39.98 E-value=77 Score=30.16 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=47.0
Q ss_pred cchhHHHHHHHHHhCCCCCceeeeeecccccccccccccccccchhHHHHHHHhchhcCCCeeEecCCccHHHHHHHHHh
Q psy15130 108 SATHIKDIRQKTANLSDTHKRLLQCSKTLLQLNFLKHVQTNEFHCIARCIAQARDVSQGADFLMVKPALPYLDIISEVKS 187 (263)
Q Consensus 108 ~DGrI~aIR~aLd~~G~~~v~im~y~k~~ssgPFRd~~~~yq~~~~~~~~e~~~Di~EGAD~ImVKPg~~yLDII~~ik~ 187 (263)
+-.||+++|++-.+ .+..|++-.-.... + ...+.++-...=.+-|||+|.+ ||..-.+-|+++.+
T Consensus 134 ~~~kI~Aa~~A~~~---~d~~I~ARTDa~~~---------~--g~deaI~Ra~aY~eAGAD~ifi-~~~~~~~ei~~~~~ 198 (294)
T TIGR02319 134 MTGKIEAAVEARED---EDFTIIARTDARES---------F--GLDEAIRRSREYVAAGADCIFL-EAMLDVEEMKRVRD 198 (294)
T ss_pred HHHHHHHHHHhccC---CCeEEEEEeccccc---------C--CHHHHHHHHHHHHHhCCCEEEe-cCCCCHHHHHHHHH
Confidence 34677777766544 55677776433211 1 1234444455566799999999 78888899999999
Q ss_pred hCCCCCe
Q psy15130 188 RHPAYPL 194 (263)
Q Consensus 188 ~~~~~Pi 194 (263)
.. +.|+
T Consensus 199 ~~-~~P~ 204 (294)
T TIGR02319 199 EI-DAPL 204 (294)
T ss_pred hc-CCCe
Confidence 87 5675
No 46
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=39.18 E-value=29 Score=34.84 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=22.4
Q ss_pred HHHHHHHhhCCCeEEEeeeccccCCCC
Q psy15130 28 VLSCLVLSCLPAFLWWVQTCAMQRAKH 54 (263)
Q Consensus 28 ~~~~~ik~~fP~l~v~~DvCLceYT~H 54 (263)
-+++.+|+..||+.|++|-|--||+..
T Consensus 179 ~~i~~vk~~~p~~iifVDNCYGEFvE~ 205 (403)
T PF06838_consen 179 EIIKFVKEINPDVIIFVDNCYGEFVET 205 (403)
T ss_dssp HHHHHHHHH-TTSEEEEE-TTTTTTSS
T ss_pred HHHHHHHhhCCCeEEEEeCCcceeccc
Confidence 467899999999999999999999865
No 47
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=38.69 E-value=64 Score=31.78 Aligned_cols=60 Identities=20% Similarity=0.244 Sum_probs=39.7
Q ss_pred ecCCccHHHHHHHHHhhCCCCCeeecccceeeccCchhHHHHHHHHHHHhhccCCCCCcccccccccc
Q psy15130 172 VKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAMEMILEKIAEDPSSGSCSNVSYALR 239 (263)
Q Consensus 172 VKPg~~yLDII~~ik~~~~~~Pi~aYqERvItVSGEyami~aAa~~~l~kia~dp~ags~l~iSY~~l 239 (263)
-.|--.|++-++++|+++++.|+++ .+.|+++. ..+...++++.+..-.+-.+|+|.++.
T Consensus 94 ~~g~~~~l~~i~~~k~~~~~~pvIa------Si~~~~s~--~~~~~~a~~~e~~GaD~iELNiSCPn~ 153 (385)
T PLN02495 94 DRPFETMLAEFKQLKEEYPDRILIA------SIMEEYNK--DAWEEIIERVEETGVDALEINFSCPHG 153 (385)
T ss_pred ccCHHHHHHHHHHHHhhCCCCcEEE------EccCCCCH--HHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 3455678999999988877788552 25565542 345556666654335677888998875
No 48
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=38.62 E-value=2.4e+02 Score=26.21 Aligned_cols=112 Identities=9% Similarity=0.023 Sum_probs=68.6
Q ss_pred eCCCcccccccccccchhchHHHHHHHHhH-hhHhhcccccccCCCcccchhHHHHHHHHHhCCCCCceeeeeecccccc
Q psy15130 61 VKSNLTNANVFHVSENFCTDTQLVMAYSRY-IICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQL 139 (263)
Q Consensus 61 ~~dg~i~~Nd~tv~~~~~rla~~Al~~A~A-Ad~VAPsdmm~~~Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~~ssg 139 (263)
++||.||. +.+. +..-.+.++ +|-+.+....--.++-..+=|.+.++...+..+ .++.++.-...
T Consensus 20 ~~dg~iD~------~~l~---~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~-~~~pvi~gv~~---- 85 (303)
T PRK03620 20 DADGSFDE------AAYR---EHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTA-GRVPVIAGAGG---- 85 (303)
T ss_pred CCCCCcCH------HHHH---HHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-CCCcEEEecCC----
Confidence 46788872 4434 444455566 888877766555566677778888888887765 45677654310
Q ss_pred cccccccccccchhHHHHHHHhchhcCCCeeEecCCcc-------HHHHHHHHHhhCCCCCeeecc
Q psy15130 140 NFLKHVQTNEFHCIARCIAQARDVSQGADFLMVKPALP-------YLDIISEVKSRHPAYPLFVYQ 198 (263)
Q Consensus 140 PFRd~~~~yq~~~~~~~~e~~~Di~EGAD~ImVKPg~~-------yLDII~~ik~~~~~~Pi~aYq 198 (263)
.. .+.+..++.=.+-|||.+|+-|-.. ..+..+++.+.+ +.|++.|+
T Consensus 86 ~t-----------~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~-~lpi~lYn 139 (303)
T PRK03620 86 GT-----------AQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKST-DLGVIVYN 139 (303)
T ss_pred CH-----------HHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEEc
Confidence 12 2222222233346889888877432 234555666666 68988888
No 49
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=38.43 E-value=1.8e+02 Score=27.13 Aligned_cols=112 Identities=11% Similarity=0.079 Sum_probs=69.9
Q ss_pred CCcccccccccccchhchHHHHHHHHhH-hhHhhcccccccCCCcccchhHHHHHHHHHhCCCCCceeeeeecccccccc
Q psy15130 63 SNLTNANVFHVSENFCTDTQLVMAYSRY-IICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQLNF 141 (263)
Q Consensus 63 dg~i~~Nd~tv~~~~~rla~~Al~~A~A-Ad~VAPsdmm~~~Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~~ssgPF 141 (263)
+|.|| .+.+. ++.-.+.++ +|=|-+....--.++-+.+=|...+|...+..+ .++.++.-...
T Consensus 23 ~g~iD------~~~l~---~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~-grvpvi~Gv~~------ 86 (309)
T cd00952 23 TDTVD------LDETA---RLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVA-GRVPVFVGATT------ 86 (309)
T ss_pred CCCcC------HHHHH---HHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhC-CCCCEEEEecc------
Confidence 47787 35544 444455566 777777776666677778889999998888876 56777765321
Q ss_pred cccccccccchhHHHHHHHhchhcCCCeeEecCCcc-------HHHHHHHHHhhCCCCCeeecc
Q psy15130 142 LKHVQTNEFHCIARCIAQARDVSQGADFLMVKPALP-------YLDIISEVKSRHPAYPLFVYQ 198 (263)
Q Consensus 142 Rd~~~~yq~~~~~~~~e~~~Di~EGAD~ImVKPg~~-------yLDII~~ik~~~~~~Pi~aYq 198 (263)
.+..+.++-++.=.+-|||.+|+-|=.. ..+.-+++.+..++.|++.|+
T Consensus 87 --------~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn 142 (309)
T cd00952 87 --------LNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYA 142 (309)
T ss_pred --------CCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEc
Confidence 2223332323333346999888876321 234455666655358989897
No 50
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=37.96 E-value=2.3e+02 Score=26.02 Aligned_cols=113 Identities=11% Similarity=-0.010 Sum_probs=68.9
Q ss_pred eeCCCcccccccccccchhchHHHHHHHHhH-hhHhhcccccccCCCcccchhHHHHHHHHHhCCCCCceeeeeeccccc
Q psy15130 60 HVKSNLTNANVFHVSENFCTDTQLVMAYSRY-IICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQ 138 (263)
Q Consensus 60 l~~dg~i~~Nd~tv~~~~~rla~~Al~~A~A-Ad~VAPsdmm~~~Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~~ss 138 (263)
+++||.|| .+.+. +..-.+.++ +|-+-+....--.++=+.+=|...++...+..+ .++.++.-.. +
T Consensus 17 f~~dg~iD------~~~l~---~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~-g~~pvi~gv~--~- 83 (296)
T TIGR03249 17 FDADGSFD------EAAYR---ENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAK-GKVPVYTGVG--G- 83 (296)
T ss_pred cCCCCCcC------HHHHH---HHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhC-CCCcEEEecC--c-
Confidence 35678887 34444 444555567 888777666555566677788888888877654 4566665431 0
Q ss_pred ccccccccccccchhHHHHHHHhchhcCCCeeEecCCcc-------HHHHHHHHHhhCCCCCeeecc
Q psy15130 139 LNFLKHVQTNEFHCIARCIAQARDVSQGADFLMVKPALP-------YLDIISEVKSRHPAYPLFVYQ 198 (263)
Q Consensus 139 gPFRd~~~~yq~~~~~~~~e~~~Di~EGAD~ImVKPg~~-------yLDII~~ik~~~~~~Pi~aYq 198 (263)
..+ +.+..++.=.+-|||.+|+-|-.. ..+..+++.+.. +.|++-|+
T Consensus 84 -~t~-----------~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~-~~pvilYn 137 (296)
T TIGR03249 84 -NTS-----------DAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCEST-DLGVIVYQ 137 (296)
T ss_pred -cHH-----------HHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcc-CCCEEEEe
Confidence 122 222333333457899988877432 244555566655 68988898
No 51
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=37.52 E-value=2.5e+02 Score=25.59 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=63.5
Q ss_pred eeCCCcccccccccccchhchHHHHHHHHhH-hhHhhcccccccCCCcccchhHHHHHHHHHhCCCCCceeeeeeccccc
Q psy15130 60 HVKSNLTNANVFHVSENFCTDTQLVMAYSRY-IICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQ 138 (263)
Q Consensus 60 l~~dg~i~~Nd~tv~~~~~rla~~Al~~A~A-Ad~VAPsdmm~~~Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~~ss 138 (263)
+++||.|| .+.+. +..--+.+. .|-+.+....--.++-..+=|.+.++...+... .++.++.-...
T Consensus 13 f~~dg~iD------~~~l~---~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~-~~~~vi~gv~~--- 79 (292)
T PRK03170 13 FKEDGSVD------FAALR---KLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVN-GRVPVIAGTGS--- 79 (292)
T ss_pred cCCCCCcC------HHHHH---HHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhC-CCCcEEeecCC---
Confidence 34566776 23433 444445556 777766655555566666778888877777654 34566644221
Q ss_pred ccccccccccccchhHHHHHHHhc-hhcCCCeeEecCCcc-------HHHHHHHHHhhCCCCCeeecc
Q psy15130 139 LNFLKHVQTNEFHCIARCIAQARD-VSQGADFLMVKPALP-------YLDIISEVKSRHPAYPLFVYQ 198 (263)
Q Consensus 139 gPFRd~~~~yq~~~~~~~~e~~~D-i~EGAD~ImVKPg~~-------yLDII~~ik~~~~~~Pi~aYq 198 (263)
.+-.+. .+..+. .+-|||.+|+-|-.. ..+..+++-+.. +.|++-|+
T Consensus 80 -----------~~~~~~-i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~-~~pv~lYn 134 (292)
T PRK03170 80 -----------NSTAEA-IELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEAT-DLPIILYN 134 (292)
T ss_pred -----------chHHHH-HHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC-CCCEEEEE
Confidence 111222 222233 335899888855332 234455555555 68888887
No 52
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=37.45 E-value=46 Score=30.45 Aligned_cols=101 Identities=14% Similarity=0.100 Sum_probs=55.9
Q ss_pred HHHHHHHhH-hhHhhcccc------cccCCCcccchhHHHHHHHHHhCCCCCceeeeeecccccccccccccccccchhH
Q psy15130 82 QLVMAYSRY-IICIALHDA------WQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQLNFLKHVQTNEFHCIA 154 (263)
Q Consensus 82 ~~Al~~A~A-Ad~VAPsdm------m~~~Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~~ssgPFRd~~~~yq~~~~~ 154 (263)
+.+-.|.++ +.-|---|- -++-|-+-+-+||+++|++..+.|| .|++-.-.... ..+ ...+
T Consensus 89 ~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~---~I~ARTDa~~~-------~~~--~~de 156 (238)
T PF13714_consen 89 RTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDF---VIIARTDAFLR-------AEE--GLDE 156 (238)
T ss_dssp HHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTS---EEEEEECHHCH-------HHH--HHHH
T ss_pred HHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeE---EEEEecccccc-------CCC--CHHH
Confidence 445555665 544433333 0111445556799999999988884 77766443221 011 1123
Q ss_pred HHHHHHhchhcCCCeeEecCCccHHHHHHHHHhhCCCCCeee
Q psy15130 155 RCIAQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFV 196 (263)
Q Consensus 155 ~~~e~~~Di~EGAD~ImVKPg~~yLDII~~ik~~~~~~Pi~a 196 (263)
.++-...=.+-|||+|.+-.-.. .+-|+++.+.. +.|+..
T Consensus 157 aI~R~~aY~eAGAD~ifi~~~~~-~~~i~~~~~~~-~~Pl~v 196 (238)
T PF13714_consen 157 AIERAKAYAEAGADMIFIPGLQS-EEEIERIVKAV-DGPLNV 196 (238)
T ss_dssp HHHHHHHHHHTT-SEEEETTSSS-HHHHHHHHHHH-SSEEEE
T ss_pred HHHHHHHHHHcCCCEEEeCCCCC-HHHHHHHHHhc-CCCEEE
Confidence 33333444579999999765544 44488888777 688543
No 53
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=37.27 E-value=44 Score=31.22 Aligned_cols=53 Identities=30% Similarity=0.456 Sum_probs=40.1
Q ss_pred cCCCeeEec-----------CCccHHHHHHHHHhhCCCCCeeecccceeeccCch-hHHHHHHHHHHHhhcc
Q psy15130 165 QGADFLMVK-----------PALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF-EANEKAMEMILEKIAE 224 (263)
Q Consensus 165 EGAD~ImVK-----------Pg~~yLDII~~ik~~~~~~Pi~aYqERvItVSGEy-ami~aAa~~~l~kia~ 224 (263)
.|+|.|-+- |.+. +|.++++++.. +.|++.-. -||=. +.++.+.+.|..|++-
T Consensus 165 tgvD~Lavs~Gt~hg~~~~~~~l~-~e~L~~i~~~~-~iPlv~hG-----gSGi~~e~i~~~i~~Gi~kiNv 229 (282)
T TIGR01859 165 TGVDYLAAAIGTSHGKYKGEPGLD-FERLKEIKELT-NIPLVLHG-----ASGIPEEQIKKAIKLGIAKINI 229 (282)
T ss_pred HCcCEEeeccCccccccCCCCccC-HHHHHHHHHHh-CCCEEEEC-----CCCCCHHHHHHHHHcCCCEEEE
Confidence 699998852 4443 78999999987 79998888 88844 6777788877665554
No 54
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=36.83 E-value=2.1e+02 Score=26.83 Aligned_cols=101 Identities=15% Similarity=0.155 Sum_probs=63.5
Q ss_pred HHHHHHHhH--hhHhh---cccccccCCCcccchhHHHHHHHHHhCCCCCceeeeeecccccccccccccccccchhHHH
Q psy15130 82 QLVMAYSRY--IICIA---LHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQLNFLKHVQTNEFHCIARC 156 (263)
Q Consensus 82 ~~Al~~A~A--Ad~VA---Psdmm~~~Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~~ssgPFRd~~~~yq~~~~~~~ 156 (263)
..|++.|.| ||.|= -...+ +++.+.++|+-..+=+--.+.|-. +.|+.-.+.+.+-|+= +.+ +
T Consensus 93 ~aalaiA~A~ga~FIRv~~~~g~~-~~d~G~~~~~a~e~~r~R~~l~a~-v~ilaDV~~kh~~~l~------~~~----~ 160 (254)
T PF03437_consen 93 KAALAIAAATGADFIRVNVFVGAY-VTDEGIIEGCAGELLRYRKRLGAD-VKILADVHVKHSSPLA------TRD----L 160 (254)
T ss_pred HHHHHHHHHhCCCEEEecCEEcee-cccCccccccHHHHHHHHHHcCCC-eEEEeeechhhcccCC------CCC----H
Confidence 345666666 66553 11222 356777788877665554555655 8888886666664431 112 1
Q ss_pred HHHHhch--hcCCCeeEecCCc----cHHHHHHHHHhhCCCCCee
Q psy15130 157 IAQARDV--SQGADFLMVKPAL----PYLDIISEVKSRHPAYPLF 195 (263)
Q Consensus 157 ~e~~~Di--~EGAD~ImVKPg~----~yLDII~~ik~~~~~~Pi~ 195 (263)
.|...|. ..+||.|+|-... +=++-++++|+..+ .|++
T Consensus 161 ~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~-~PVl 204 (254)
T PF03437_consen 161 EEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVP-VPVL 204 (254)
T ss_pred HHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCC-CCEE
Confidence 3344453 4789999997753 47889999999885 8855
No 55
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=36.54 E-value=1.1e+02 Score=27.76 Aligned_cols=43 Identities=14% Similarity=0.191 Sum_probs=30.7
Q ss_pred chhHHHHHHHhchhcCCCeeEecCCcc---------------HHHHHHHHHhhCCCCCe
Q psy15130 151 HCIARCIAQARDVSQGADFLMVKPALP---------------YLDIISEVKSRHPAYPL 194 (263)
Q Consensus 151 ~~~~~~~e~~~Di~EGAD~ImVKPg~~---------------yLDII~~ik~~~~~~Pi 194 (263)
+..+....+..-+++|||+|=+=.+.+ +..+++.+++.+ +.|+
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~-~~pi 79 (258)
T cd00423 22 SLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP-DVPI 79 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC-CCeE
Confidence 444555566677899999987766555 778888888765 5663
No 56
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=35.91 E-value=2.5e+02 Score=25.92 Aligned_cols=118 Identities=7% Similarity=0.017 Sum_probs=66.5
Q ss_pred eeCCCcccccccccccchhchHHHHHHHHhH-hhHhhcccccccCCCcccchhHHHHHHHHHhCCCCCceeeeeeccccc
Q psy15130 60 HVKSNLTNANVFHVSENFCTDTQLVMAYSRY-IICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQ 138 (263)
Q Consensus 60 l~~dg~i~~Nd~tv~~~~~rla~~Al~~A~A-Ad~VAPsdmm~~~Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~~ss 138 (263)
+++||.|| ++.+.++.+..+. .- +|-+.+....--.++=..+=|..-+|...+..+ .++.++.-...
T Consensus 12 f~~dg~iD------~~~~~~~i~~~i~--~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~-~~~pvi~gv~~--- 79 (290)
T TIGR00683 12 FNEDGTIN------EKGLRQIIRHNID--KMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK-DQIALIAQVGS--- 79 (290)
T ss_pred CCCCCCcC------HHHHHHHHHHHHh--CCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhC-CCCcEEEecCC---
Confidence 45677787 3444444333222 22 666666665544566666778888888888765 35666654321
Q ss_pred ccccccccccccchhHHHHHHHhchhcCCCeeEecCCc-------cHHHHHHHHHhhCCCCCeeecccc
Q psy15130 139 LNFLKHVQTNEFHCIARCIAQARDVSQGADFLMVKPAL-------PYLDIISEVKSRHPAYPLFVYQER 200 (263)
Q Consensus 139 gPFRd~~~~yq~~~~~~~~e~~~Di~EGAD~ImVKPg~-------~yLDII~~ik~~~~~~Pi~aYqER 200 (263)
.+-.+.+..++.=.+-|||.||+=|=. -..+.-+++.+..++.|++.|+-+
T Consensus 80 -----------~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P 137 (290)
T TIGR00683 80 -----------VNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIP 137 (290)
T ss_pred -----------CCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCc
Confidence 111222222223344699999885531 134445555555546899999833
No 57
>cd01061 RNase_T2_euk Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. Generally, RNases have two distinct binding sites: the primary site (B1 site) and the subsite (B2 site), for nucleotides located at the 5'- and 3'- terminal ends of the sessil bond, respectively. This CD includes the eukaryotic RNase T2 family members.
Probab=35.77 E-value=23 Score=30.47 Aligned_cols=85 Identities=14% Similarity=0.111 Sum_probs=50.0
Q ss_pred HHHHHhhCCCeEEEe-eecc--ccCCCCCccee---eeCCCcccccccccccchhchHHHHHHHHhH---hhHhhccccc
Q psy15130 30 SCLVLSCLPAFLWWV-QTCA--MQRAKHLHCTL---HVKSNLTNANVFHVSENFCTDTQLVMAYSRY---IICIALHDAW 100 (263)
Q Consensus 30 ~~~ik~~fP~l~v~~-DvCL--ceYT~HGHCGi---l~~dg~i~~Nd~tv~~~~~rla~~Al~~A~A---Ad~VAPsdmm 100 (263)
...+++..|++.-.. +.++ -||..||.|.. ++++ ...+.|+++.+. -.......+.
T Consensus 63 ~~~L~~~Wp~l~~~~~~~~fw~hEW~KHGTC~~~~~~~~~---------------~YF~~a~~l~~~~~~~~~L~~~~I~ 127 (195)
T cd01061 63 LNELNKYWPDLTGPKNNQSFWEHEWNKHGTCSSTLLYNQY---------------DYFDTALKLKDKLDLLKILAKAGIV 127 (195)
T ss_pred hHHHhccCCCCcCCCCcchHHHHHHhhCcEeCCCcccCHH---------------HHHHHHHHHHHHCCHHHHHHHCCcC
Confidence 455677778876542 3444 59999999965 2222 234566666666 2333444444
Q ss_pred ccCCCcccchhHHHHHHHHHhCCCCCceeeeeec
Q psy15130 101 QTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSK 134 (263)
Q Consensus 101 ~~~Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k 134 (263)
|+ -..-+..+|+++|.+.- .....|.+.+
T Consensus 128 ---P~-~~~~~~~~i~~ai~~~~-g~~~~l~C~~ 156 (195)
T cd01061 128 ---PS-TQTYTLSDIQNAIKAAT-GVTPVIKCSK 156 (195)
T ss_pred ---CC-CcEEcHHHHHHHHHHHH-CCCcEEEeCc
Confidence 65 33457888888887654 3345555533
No 58
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=35.61 E-value=96 Score=29.33 Aligned_cols=75 Identities=15% Similarity=0.096 Sum_probs=47.4
Q ss_pred CCcccchhHHHHHHHHHhCCCCCceeeeeecccccccccccccccccchhHHHHHHHhchhcCCCeeEecCCccHHHHHH
Q psy15130 104 PIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQLNFLKHVQTNEFHCIARCIAQARDVSQGADFLMVKPALPYLDIIS 183 (263)
Q Consensus 104 Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~~ssgPFRd~~~~yq~~~~~~~~e~~~Di~EGAD~ImVKPg~~yLDII~ 183 (263)
|-+-+-.||+++|++-.+ .+..|++-.-....+ . ..+.++-...=.+-|||+|.+ ||..-++-++
T Consensus 126 ~~ee~~~kI~Aa~~a~~~---~d~~IiARTDa~~~~---------g--~deAI~Ra~ay~~AGAD~vfi-~g~~~~e~i~ 190 (285)
T TIGR02317 126 SREEMVDKIAAAVDAKRD---EDFVIIARTDARAVE---------G--LDAAIERAKAYVEAGADMIFP-EALTSLEEFR 190 (285)
T ss_pred CHHHHHHHHHHHHHhccC---CCEEEEEEcCccccc---------C--HHHHHHHHHHHHHcCCCEEEe-CCCCCHHHHH
Confidence 333445677777766542 567777764333221 1 233434444555689999999 6777788889
Q ss_pred HHHhhCCCCCe
Q psy15130 184 EVKSRHPAYPL 194 (263)
Q Consensus 184 ~ik~~~~~~Pi 194 (263)
++.+.. ..|+
T Consensus 191 ~~~~~i-~~Pl 200 (285)
T TIGR02317 191 QFAKAV-KVPL 200 (285)
T ss_pred HHHHhc-CCCE
Confidence 998887 4775
No 59
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=34.79 E-value=3.1e+02 Score=25.21 Aligned_cols=132 Identities=9% Similarity=0.006 Sum_probs=73.3
Q ss_pred HHHHHHHHhhCCCeEEEeeeccccCCCCCcceeeeCCCcccccccccccchhchHHHHHHHHhH-hhHhhcccccccCCC
Q psy15130 27 LVLSCLVLSCLPAFLWWVQTCAMQRAKHLHCTLHVKSNLTNANVFHVSENFCTDTQLVMAYSRY-IICIALHDAWQTRPI 105 (263)
Q Consensus 27 ~~~~~~ik~~fP~l~v~~DvCLceYT~HGHCGil~~dg~i~~Nd~tv~~~~~rla~~Al~~A~A-Ad~VAPsdmm~~~Ps 105 (263)
+-.++.|....|.+.|++|. +.|.=+. .+++. +.+-.+.++ |+-|---|.-
T Consensus 61 ~~~~~~I~r~~~~~pviaD~---------------~~G~g~~-----~~~~~---~~~~~l~~aGa~gv~iED~~----- 112 (240)
T cd06556 61 PYHVRAVRRGAPLALIVADL---------------PFGAYGA-----PTAAF---ELAKTFMRAGAAGVKIEGGE----- 112 (240)
T ss_pred HHHHHHHHhhCCCCCEEEeC---------------CCCCCcC-----HHHHH---HHHHHHHHcCCcEEEEcCcH-----
Confidence 34567777777877788874 2332220 02222 456667777 7777655431
Q ss_pred cccchhHHHHHHHHHhCCCCCceeeeeeccc-----ccccccccccccccchhHHHHHHHhchhcCCCeeEecCCccHHH
Q psy15130 106 QTSATHIKDIRQKTANLSDTHKRLLQCSKTL-----LQLNFLKHVQTNEFHCIARCIAQARDVSQGADFLMVKPALPYLD 180 (263)
Q Consensus 106 dm~DGrI~aIR~aLd~~G~~~v~im~y~k~~-----ssgPFRd~~~~yq~~~~~~~~e~~~Di~EGAD~ImVKPg~~yLD 180 (263)
. +-.+|++||+ ++ ..+|+..-.. ++|=||.--+. .....+.++....=.+-|||+|.+. +. =.+
T Consensus 113 ~-~~~~i~ai~~----a~---i~ViaRtd~~pq~~~~~gg~~~~~~~-~~~~~~ai~Ra~ay~~AGAd~i~~e-~~-~~e 181 (240)
T cd06556 113 W-HIETLQMLTA----AA---VPVIAHTGLTPQSVNTSGGDEGQYRG-DEAGEQLIADALAYAPAGADLIVME-CV-PVE 181 (240)
T ss_pred H-HHHHHHHHHH----cC---CeEEEEeCCchhhhhccCCceeeccC-HHHHHHHHHHHHHHHHcCCCEEEEc-CC-CHH
Confidence 0 1224555544 34 5777773321 12333321111 1112333444555567899999986 55 688
Q ss_pred HHHHHHhhCCCCCeeecc
Q psy15130 181 IISEVKSRHPAYPLFVYQ 198 (263)
Q Consensus 181 II~~ik~~~~~~Pi~aYq 198 (263)
.++++.+.. ..|+....
T Consensus 182 ~~~~i~~~~-~~P~~~~g 198 (240)
T cd06556 182 LAKQITEAL-AIPLAGIG 198 (240)
T ss_pred HHHHHHHhC-CCCEEEEe
Confidence 999999886 68976543
No 60
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=34.64 E-value=37 Score=29.47 Aligned_cols=30 Identities=10% Similarity=0.069 Sum_probs=21.5
Q ss_pred hhCCCeEEEe---eec-cccCCCCCcceeeeCCCccc
Q psy15130 35 SCLPAFLWWV---QTC-AMQRAKHLHCTLHVKSNLTN 67 (263)
Q Consensus 35 ~~fP~l~v~~---DvC-LceYT~HGHCGil~~dg~i~ 67 (263)
+.+|++.+.. |+| -|||-+++||| + ++.+.
T Consensus 37 ~~ge~i~lV~g~DDIC~~cp~~~~~~C~--~-e~~~~ 70 (135)
T COG3543 37 KAGEDIKLVDGPDDICVSCPCKIDNHCG--D-ESSVE 70 (135)
T ss_pred hcCCCeEEEecccchhhcCcCCCCCccc--c-chhHH
Confidence 5688855543 777 49999999999 3 44555
No 61
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=33.37 E-value=1.9e+02 Score=26.27 Aligned_cols=115 Identities=9% Similarity=0.079 Sum_probs=61.6
Q ss_pred eeCCCcccccccccccchhchHHHHHHHHhH-hhHhhcccccccCCCcccchhHHHHHHHHHhCCCCCceeeeeeccccc
Q psy15130 60 HVKSNLTNANVFHVSENFCTDTQLVMAYSRY-IICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQ 138 (263)
Q Consensus 60 l~~dg~i~~Nd~tv~~~~~rla~~Al~~A~A-Ad~VAPsdmm~~~Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~~ss 138 (263)
+++||.|| ++.+. +.+-.+.++ .|-+-.....--.++=+.+=|..-++...+..+ .++.++.-....
T Consensus 13 f~~dg~id------~~~~~---~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~-~~~~vi~gv~~~-- 80 (289)
T PF00701_consen 13 FNADGSID------EDALK---RLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAA-GRVPVIAGVGAN-- 80 (289)
T ss_dssp BETTSSB-------HHHHH---HHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHT-TSSEEEEEEESS--
T ss_pred CCCCcCcC------HHHHH---HHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHcc-CceEEEecCcch--
Confidence 45678887 34434 344444455 665555444333344455667777777777665 456666653211
Q ss_pred ccccccccccccchhHHHHHHHhchhcCCCeeEecCCc-------cHHHHHHHHHhhCCCCCeeeccc
Q psy15130 139 LNFLKHVQTNEFHCIARCIAQARDVSQGADFLMVKPAL-------PYLDIISEVKSRHPAYPLFVYQE 199 (263)
Q Consensus 139 gPFRd~~~~yq~~~~~~~~e~~~Di~EGAD~ImVKPg~-------~yLDII~~ik~~~~~~Pi~aYqE 199 (263)
+-.+.+..++.=.+-|||.+|+=|=. -..+..+++.+.. +.|++-|+.
T Consensus 81 ------------st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~-~~pi~iYn~ 135 (289)
T PF00701_consen 81 ------------STEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADAT-DLPIIIYNN 135 (289)
T ss_dssp ------------SHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHS-SSEEEEEEB
T ss_pred ------------hHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhc-CCCEEEEEC
Confidence 11222122222234789988765421 1256667777665 799999983
No 62
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=32.86 E-value=55 Score=27.65 Aligned_cols=45 Identities=11% Similarity=0.019 Sum_probs=32.1
Q ss_pred HHHHHHHhH--hhHhhcccccccCCCcccchhHHHHHHHHHhCCCCCceeee
Q psy15130 82 QLVMAYSRY--IICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQ 131 (263)
Q Consensus 82 ~~Al~~A~A--Ad~VAPsdmm~~~Psdm~DGrI~aIR~aLd~~G~~~v~im~ 131 (263)
++-+..|+. ||+|+-|.+| .+-| ..++.+.+.|.++|+.++.++-
T Consensus 40 e~~v~aa~~~~adiVglS~L~---t~~~--~~~~~~~~~l~~~gl~~v~viv 86 (128)
T cd02072 40 EEFIDAAIETDADAILVSSLY---GHGE--IDCKGLREKCDEAGLKDILLYV 86 (128)
T ss_pred HHHHHHHHHcCCCEEEEeccc---cCCH--HHHHHHHHHHHHCCCCCCeEEE
Confidence 444555555 9999988888 3333 3677888999999997765553
No 63
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=32.62 E-value=2.2e+02 Score=27.07 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=48.1
Q ss_pred CCcccchhHHHHHHHHHhCCCCCceeeeeecccccccccccccccccchhHHHHHHHhchhcCCCeeEecCCccHHHHHH
Q psy15130 104 PIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQLNFLKHVQTNEFHCIARCIAQARDVSQGADFLMVKPALPYLDIIS 183 (263)
Q Consensus 104 Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~~ssgPFRd~~~~yq~~~~~~~~e~~~Di~EGAD~ImVKPg~~yLDII~ 183 (263)
|.+-+-.||+++|++-. | .+..|++-.-.... . ...+.++-...=.+-|||+|.+ ||..-++-|+
T Consensus 131 ~~ee~~~kI~Aa~~a~~--~-~d~~IiARTDa~~~---------~--g~deAI~Ra~aY~eAGAD~ifi-~~~~~~~~i~ 195 (292)
T PRK11320 131 SQEEMVDRIKAAVDART--D-PDFVIMARTDALAV---------E--GLDAAIERAQAYVEAGADMIFP-EAMTELEMYR 195 (292)
T ss_pred CHHHHHHHHHHHHHhcc--C-CCeEEEEecCcccc---------c--CHHHHHHHHHHHHHcCCCEEEe-cCCCCHHHHH
Confidence 44444567777766654 2 56677776333221 1 1234444455566789999999 5777889999
Q ss_pred HHHhhCCCCCe
Q psy15130 184 EVKSRHPAYPL 194 (263)
Q Consensus 184 ~ik~~~~~~Pi 194 (263)
++.+.. +.|+
T Consensus 196 ~~~~~~-~~Pl 205 (292)
T PRK11320 196 RFADAV-KVPI 205 (292)
T ss_pred HHHHhc-CCCE
Confidence 999877 5775
No 64
>KOG2193|consensus
Probab=32.04 E-value=31 Score=35.43 Aligned_cols=57 Identities=30% Similarity=0.327 Sum_probs=36.4
Q ss_pred CeeEecCCccHHHHHHHHHhhC---CCCCeeecc-cceeeccCchhHHHHHHHHHHHhhcc
Q psy15130 168 DFLMVKPALPYLDIISEVKSRH---PAYPLFVYQ-ERCITVSGHFEANEKAMEMILEKIAE 224 (263)
Q Consensus 168 D~ImVKPg~~yLDII~~ik~~~---~~~Pi~aYq-ERvItVSGEyami~aAa~~~l~kia~ 224 (263)
+-+|+|-|.....|..+...+. +..-+--|+ ||-|||.|.-+....|-+.+++|+.+
T Consensus 292 GRLIGKeGrnlKkIeq~TgTkITis~lqels~ynpERTItVkGsiEac~~AE~eImkKlre 352 (584)
T KOG2193|consen 292 GRLIGKEGRNLKKIEQDTGTKITISKLQELSLYNPERTITVKGSIEACVQAEAEIMKKLRE 352 (584)
T ss_pred hhhhhhccccHHHHHhhcCCceeeeehhhhcccCccceEEecccHHHHHHHHHHHHHHHHH
Confidence 4489999995555554443331 011122332 99999999887777777777777654
No 65
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=31.68 E-value=1.4e+02 Score=27.43 Aligned_cols=60 Identities=18% Similarity=0.272 Sum_probs=39.1
Q ss_pred chhHHHHHHHhchhcCCCeeEe-----cCCcc----------HHHHHHHHHhhCCCCCeeecccceeeccCchhHHHHHH
Q psy15130 151 HCIARCIAQARDVSQGADFLMV-----KPALP----------YLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAM 215 (263)
Q Consensus 151 ~~~~~~~e~~~Di~EGAD~ImV-----KPg~~----------yLDII~~ik~~~~~~Pi~aYqERvItVSGEyami~aAa 215 (263)
.+.+....+..-+++|||+|=+ .|+.. ...+++.+++.+ +.|+ ..+ |-....+++|.
T Consensus 21 ~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~-~~pl-siD------T~~~~vi~~al 92 (257)
T TIGR01496 21 SVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP-DVPI-SVD------TYRAEVARAAL 92 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeE-EEe------CCCHHHHHHHH
Confidence 3445556667778999999877 46654 567777787766 6774 333 44556666666
Q ss_pred HHH
Q psy15130 216 EMI 218 (263)
Q Consensus 216 ~~~ 218 (263)
+.|
T Consensus 93 ~~G 95 (257)
T TIGR01496 93 EAG 95 (257)
T ss_pred HcC
Confidence 665
No 66
>smart00455 RBD Raf-like Ras-binding domain.
Probab=31.67 E-value=70 Score=24.06 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=21.9
Q ss_pred CeeEecCCccHHHHHHHHHhhCCCCC
Q psy15130 168 DFLMVKPALPYLDIISEVKSRHPAYP 193 (263)
Q Consensus 168 D~ImVKPg~~yLDII~~ik~~~~~~P 193 (263)
=.|-+|||.+..|+++.+-++.+-.|
T Consensus 12 ~~V~vrpg~tl~e~L~~~~~kr~l~~ 37 (70)
T smart00455 12 TVVKVRPGKTVRDALAKALKKRGLNP 37 (70)
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCH
Confidence 35889999999999999999875445
No 67
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=31.52 E-value=2.1e+02 Score=27.73 Aligned_cols=48 Identities=29% Similarity=0.317 Sum_probs=35.7
Q ss_pred hcCCCeeEecC--Ccc---------HHHHHHHHHhhCCCCCeeecccceeeccC----chhHHHHHHHHH
Q psy15130 164 SQGADFLMVKP--ALP---------YLDIISEVKSRHPAYPLFVYQERCITVSG----HFEANEKAMEMI 218 (263)
Q Consensus 164 ~EGAD~ImVKP--g~~---------yLDII~~ik~~~~~~Pi~aYqERvItVSG----Eyami~aAa~~~ 218 (263)
+.|||+|=++- +.+ +..+++.+.+.. +.|++.. .|| +.+.+++|++..
T Consensus 87 ~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eav-d~PL~Id------~s~n~~kD~evleaale~~ 149 (319)
T PRK04452 87 EYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAV-DVPLIIG------GSGNPEKDAEVLEKVAEAA 149 (319)
T ss_pred HhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhC-CCCEEEe------cCCCCCCCHHHHHHHHHHh
Confidence 68999999983 222 778999998877 8998744 355 678888777655
No 68
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=31.30 E-value=1.4e+02 Score=26.02 Aligned_cols=88 Identities=22% Similarity=0.329 Sum_probs=52.4
Q ss_pred cCCCeeEecCCc-------cHHHHHHHHHhhCCCCC-eeecccceeeccCch--------hHHHHHHHHH-------HH-
Q psy15130 165 QGADFLMVKPAL-------PYLDIISEVKSRHPAYP-LFVYQERCITVSGHF--------EANEKAMEMI-------LE- 220 (263)
Q Consensus 165 EGAD~ImVKPg~-------~yLDII~~ik~~~~~~P-i~aYqERvItVSGEy--------ami~aAa~~~-------l~- 220 (263)
+|||+|=..--. ...+.++.+++.+ ..| ++.+- ...=-|.+ +.++.+++.+ ++
T Consensus 22 ~~~D~vElRlD~l~~~~~~~~~~~l~~lr~~~-~~piI~T~R--~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE~~~ 98 (224)
T PF01487_consen 22 SGADAVELRLDYLENDSAEDISEQLAELRRSL-DLPIIFTVR--TKEEGGRFQGSEEEYLELLERAIRLGPDYIDIELDL 98 (224)
T ss_dssp TTTSEEEEEGGGSTTTSHHHHHHHHHHHHHHC-TSEEEEE----BGGGTSSBSS-HHHHHHHHHHHHHHTSSEEEEEGGC
T ss_pred cCCCEEEEEeccccccChHHHHHHHHHHHHhC-CCCEEEEec--ccccCCCCcCCHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 389987665432 2356777787777 789 55553 11112333 6777777775 11
Q ss_pred ------hhccCCCCCcccccccccccccchHHHhHhhhhcc
Q psy15130 221 ------KIAEDPSSGSCSNVSYALRYGTEGWGELLHRFTRT 255 (263)
Q Consensus 221 ------kia~dp~ags~l~iSY~~l~Gp~~~~~~~~~~~~~ 255 (263)
........++.+++||+..+++-.|.++...+.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~ 139 (224)
T PF01487_consen 99 FPDDLKSRLAARKGGTKIILSYHDFEKTPSWEELIELLEEM 139 (224)
T ss_dssp CHHHHHHHHHHHHTTSEEEEEEEESS---THHHHHHHHHHH
T ss_pred chhHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHH
Confidence 12223447889999999999998888877766553
No 69
>KOG3349|consensus
Probab=31.28 E-value=61 Score=29.13 Aligned_cols=60 Identities=10% Similarity=-0.006 Sum_probs=38.6
Q ss_pred HHHHHHhCCCCCceeeeeeccccc--ccccccccccccchh--HHHHHHHhchhcCCCeeEecCCc
Q psy15130 115 IRQKTANLSDTHKRLLQCSKTLLQ--LNFLKHVQTNEFHCI--ARCIAQARDVSQGADFLMVKPAL 176 (263)
Q Consensus 115 IR~aLd~~G~~~v~im~y~k~~ss--gPFRd~~~~yq~~~~--~~~~e~~~Di~EGAD~ImVKPg~ 176 (263)
-.++|.+.||++ .|+++-+-+.- -|++..++.+-+.-. ..--++..||.+ ||+||.-.|.
T Consensus 27 ~~~~L~k~G~~k-LiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~-AdlVIsHAGa 90 (170)
T KOG3349|consen 27 FLQELQKRGFTK-LIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRS-ADLVISHAGA 90 (170)
T ss_pred HHHHHHHcCccE-EEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhh-ccEEEecCCc
Confidence 458999999976 78888554333 477765544443210 000244577777 9999998875
No 70
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=30.64 E-value=68 Score=27.19 Aligned_cols=43 Identities=14% Similarity=0.023 Sum_probs=30.6
Q ss_pred HHHHHHHhH--hhHhhcccccccCCCcccchhHHHHHHHHHhCCCCCcee
Q psy15130 82 QLVMAYSRY--IICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRL 129 (263)
Q Consensus 82 ~~Al~~A~A--Ad~VAPsdmm~~~Psdm~DGrI~aIR~aLd~~G~~~v~i 129 (263)
+.-+.-|+. ||+|+-|.+| -.- .-.++...+.|.++|+.++.+
T Consensus 42 e~~v~aa~~~~adiVglS~l~---~~~--~~~~~~~~~~l~~~gl~~~~v 86 (134)
T TIGR01501 42 EEFIKAAIETKADAILVSSLY---GHG--EIDCKGLRQKCDEAGLEGILL 86 (134)
T ss_pred HHHHHHHHHcCCCEEEEeccc---ccC--HHHHHHHHHHHHHCCCCCCEE
Confidence 344555555 9999998888 222 225778889999999977654
No 71
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=30.14 E-value=81 Score=29.13 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=20.8
Q ss_pred hhHH-HHHHHhchhcCCCeeEecCCccHHHHHHHH
Q psy15130 152 CIAR-CIAQARDVSQGADFLMVKPALPYLDIISEV 185 (263)
Q Consensus 152 ~~~~-~~e~~~Di~EGAD~ImVKPg~~yLDII~~i 185 (263)
|.+| +-|+.+.|.|||-||=-|.-.-.-|+++.+
T Consensus 123 cGarnLGEALRRI~EGAaMIRtKGEaGTGnvveAV 157 (208)
T PF01680_consen 123 CGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAV 157 (208)
T ss_dssp EEESSHHHHHHHHHTT-SEEEEETTTTST-THHHH
T ss_pred ecCCCHHHHHhhHHhhhhhhcccCCCCCCcHHHHH
Confidence 4444 358899999999999988532223444433
No 72
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=28.88 E-value=1.3e+02 Score=27.89 Aligned_cols=77 Identities=22% Similarity=0.312 Sum_probs=48.9
Q ss_pred ccHHHHHHHHHhhCCCCC-eeecccc----eeeccC-ch-hHHHHHHHHH----------------HHhhccCCCCCccc
Q psy15130 176 LPYLDIISEVKSRHPAYP-LFVYQER----CITVSG-HF-EANEKAMEMI----------------LEKIAEDPSSGSCS 232 (263)
Q Consensus 176 ~~yLDII~~ik~~~~~~P-i~aYqER----vItVSG-Ey-ami~aAa~~~----------------l~kia~dp~ags~l 232 (263)
...++..+++.+.+.+.| ++.|--+ -...+. +| ..++.+++.. -+.+...++++ +
T Consensus 42 ~~~~~~~~~~~e~~~~~~~IfT~R~~~EGG~~~~~~~~~i~ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~--v 119 (231)
T COG0710 42 VEVLEVAKALREKDPDKPLIFTFRTVKEGGEFPGSEEEYIELLKKLAELNGPDYIDIELSSPEDDVKEIIKFAKKHG--V 119 (231)
T ss_pred chHHHHHHHHHHhccCCceEEEEeehhhcCCCCCCHHHHHHHHHHHHhhcCCCEEEEEccCcchhHHHHHhccccCC--E
Confidence 466777788888877777 6655200 000222 23 5666666642 23444455566 9
Q ss_pred ccccccccccchHHHhHhhhhc
Q psy15130 233 NVSYALRYGTEGWGELLHRFTR 254 (263)
Q Consensus 233 ~iSY~~l~Gp~~~~~~~~~~~~ 254 (263)
++||++-++.-+|.|+..|+.+
T Consensus 120 I~SyH~F~~TP~~~~i~~~l~k 141 (231)
T COG0710 120 IVSYHDFEKTPPLEEIIERLDK 141 (231)
T ss_pred EEEeccCCCCCcHHHHHHHHHH
Confidence 9999999999988888877754
No 73
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=28.80 E-value=82 Score=29.11 Aligned_cols=124 Identities=10% Similarity=0.100 Sum_probs=75.8
Q ss_pred hHHHHHHHHhHh---hHhhcccccccCCCcccchhHHHHHHHHHhCCCCCceeeee-ecccccccccccc------cccc
Q psy15130 80 DTQLVMAYSRYI---ICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQC-SKTLLQLNFLKHV------QTNE 149 (263)
Q Consensus 80 la~~Al~~A~AA---d~VAPsdmm~~~Psdm~DGrI~aIR~aLd~~G~~~v~im~y-~k~~ssgPFRd~~------~~yq 149 (263)
..+.|+.+|+.+ .|++ .|.+++....-|+++.+.|..+ +.| ..-+..-||.|+. ...-
T Consensus 62 TGd~a~~~~k~~g~g~v~~---------~D~s~~ML~~a~~k~~~~~~~~---i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 62 TGDMALLLAKSVGTGEVVG---------LDISESMLEVAREKLKKKGVQN---VEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred ccHHHHHHHHhcCCceEEE---------EECCHHHHHHHHHHhhccCccc---eEEEEechhhCCCCCCccCEEEeeehh
Confidence 346788888884 6766 6778899999999999999877 566 4445558999842 2222
Q ss_pred c---chhHHHHHHHhchhcCCCeeEecCCccHHHHHHHHHhhC--C-CCCeeecccceee-ccCchhHHHHHHHHH
Q psy15130 150 F---HCIARCIAQARDVSQGADFLMVKPALPYLDIISEVKSRH--P-AYPLFVYQERCIT-VSGHFEANEKAMEMI 218 (263)
Q Consensus 150 ~---~~~~~~~e~~~Di~EGAD~ImVKPg~~yLDII~~ik~~~--~-~~Pi~aYqERvIt-VSGEyami~aAa~~~ 218 (263)
+ +....++|+.|.+..|-=.++..-..+-.-.++..-..+ . -.|.+.-- ++ -..+|+.+....+..
T Consensus 130 rnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~---~~~~~~~y~yL~eSi~~~ 202 (238)
T COG2226 130 RNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKL---VAKDAEAYEYLAESIRRF 202 (238)
T ss_pred hcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhcee---eecChHHHHHHHHHHHhC
Confidence 2 457788999999998765554433333222333332221 1 24644333 11 234666666555443
No 74
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=28.65 E-value=1.1e+02 Score=25.82 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=29.3
Q ss_pred HHHHhchhcCCCeeEe---cCCc-----cH---HHHHHHHHhhCCCCCeeecc
Q psy15130 157 IAQARDVSQGADFLMV---KPAL-----PY---LDIISEVKSRHPAYPLFVYQ 198 (263)
Q Consensus 157 ~e~~~Di~EGAD~ImV---KPg~-----~y---LDII~~ik~~~~~~Pi~aYq 198 (263)
.|+..-.+.|||.|.. .|+. .. ++.++++++.+++.|+++..
T Consensus 115 ~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~G 167 (212)
T PRK00043 115 EEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIG 167 (212)
T ss_pred HHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEEC
Confidence 4556666789999984 3432 22 78999999887448877654
No 75
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=28.55 E-value=3.4e+02 Score=23.47 Aligned_cols=78 Identities=15% Similarity=0.088 Sum_probs=40.8
Q ss_pred chhHHHHHHHHHhCCCCCceeeeeecccccccccccccccccchhHHHHHHHhchhcCCCeeEec------CCccHH-HH
Q psy15130 109 ATHIKDIRQKTANLSDTHKRLLQCSKTLLQLNFLKHVQTNEFHCIARCIAQARDVSQGADFLMVK------PALPYL-DI 181 (263)
Q Consensus 109 DGrI~aIR~aLd~~G~~~v~im~y~k~~ssgPFRd~~~~yq~~~~~~~~e~~~Di~EGAD~ImVK------Pg~~yL-DI 181 (263)
-|++.-+++++...|+..+.++.... -|++..+ ...+...|. ++..-.-++-+-+.+- +|..|- |.
T Consensus 18 ~GH~~l~~~a~~~~~~d~v~~~p~~~----~~~k~~~--~~~~~~~R~-~m~~~a~~~~~~~~v~~~E~~~~~~syT~~t 90 (203)
T PRK00071 18 YGHLAIAEEAAERLGLDEVWFLPNPG----PPHKPQK--PLAPLEHRL-AMLELAIADNPRFSVSDIELERPGPSYTIDT 90 (203)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCC----CCCCCCC--CCCCHHHHH-HHHHHHhcCCCceEEeHHHHhCCCCCCHHHH
Confidence 58999999999999887655554322 2443321 223333331 2221111222223332 344443 88
Q ss_pred HHHHHhhCCCCC
Q psy15130 182 ISEVKSRHPAYP 193 (263)
Q Consensus 182 I~~ik~~~~~~P 193 (263)
++.+++++++.+
T Consensus 91 l~~l~~~~p~~~ 102 (203)
T PRK00071 91 LRELRARYPDVE 102 (203)
T ss_pred HHHHHHHCCCCc
Confidence 888888775433
No 76
>KOG1676|consensus
Probab=28.12 E-value=51 Score=34.69 Aligned_cols=56 Identities=13% Similarity=0.202 Sum_probs=43.5
Q ss_pred CeeEecCCccHHHHHHHHHhhCC-------CCCeeecccceeeccCchhHHHHHHHHHHHhhccCCC
Q psy15130 168 DFLMVKPALPYLDIISEVKSRHP-------AYPLFVYQERCITVSGHFEANEKAMEMILEKIAEDPS 227 (263)
Q Consensus 168 D~ImVKPg~~yLDII~~ik~~~~-------~~Pi~aYqERvItVSGEyami~aAa~~~l~kia~dp~ 227 (263)
++||+|+|- -|+.+..+++ +-|--.+.||..+++|...+|..|-..|=.|+-..+.
T Consensus 330 GLvIGrGGE----tIK~in~qSGA~~el~r~~p~~~~~ektf~IrG~~~QIdhAk~LIr~kvg~~~~ 392 (600)
T KOG1676|consen 330 GLVIGRGGE----TIKQINQQSGARCELSRQPPNGNPKEKTFVIRGDKRQIDHAKQLIRDKVGDIAP 392 (600)
T ss_pred ccccCCCcc----chhhhcccCCccccccCCCCCCCccceEEEEecCcccchHHHHHHHHHhcccCC
Confidence 558999998 5555555532 3367888999999999999999999999777766544
No 77
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=27.90 E-value=1e+02 Score=26.41 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=28.7
Q ss_pred HHHHhchhcCCCeeEecCCcc-HHHHHHHHHhhCCCCCeee
Q psy15130 157 IAQARDVSQGADFLMVKPALP-YLDIISEVKSRHPAYPLFV 196 (263)
Q Consensus 157 ~e~~~Di~EGAD~ImVKPg~~-yLDII~~ik~~~~~~Pi~a 196 (263)
.|+..=++.|||+|...|..+ -.+.++.+++.+++.|+++
T Consensus 108 ~e~~~A~~~Gad~i~~~p~~~~g~~~~~~l~~~~~~~p~~a 148 (190)
T cd00452 108 TEIMQALELGADIVKLFPAEAVGPAYIKALKGPFPQVRFMP 148 (190)
T ss_pred HHHHHHHHCCCCEEEEcCCcccCHHHHHHHHhhCCCCeEEE
Confidence 344555679999999998653 3567888887776678764
No 78
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=27.64 E-value=1.1e+02 Score=28.83 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=31.6
Q ss_pred chhHHHHHHHhchhcCCCeeEec-----CCcc----------HHHHHHHHHhhCCCCC
Q psy15130 151 HCIARCIAQARDVSQGADFLMVK-----PALP----------YLDIISEVKSRHPAYP 193 (263)
Q Consensus 151 ~~~~~~~e~~~Di~EGAD~ImVK-----Pg~~----------yLDII~~ik~~~~~~P 193 (263)
+..+.+..+..-+++|||+|=+= ||.. .+.+|+.+++.+ +.|
T Consensus 36 ~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-~~~ 92 (282)
T PRK11613 36 SLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-EVW 92 (282)
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCe
Confidence 45555567777789999999776 9987 666788888665 566
No 79
>PRK10586 putative oxidoreductase; Provisional
Probab=26.97 E-value=2.1e+02 Score=27.53 Aligned_cols=88 Identities=9% Similarity=-0.007 Sum_probs=53.0
Q ss_pred chhHHHHHHHHHhCCCCCceeeee-eccccccc-----cccc---ccccccc-hhHHHHHHHhchhcCCCeeEecCCccH
Q psy15130 109 ATHIKDIRQKTANLSDTHKRLLQC-SKTLLQLN-----FLKH---VQTNEFH-CIARCIAQARDVSQGADFLMVKPALPY 178 (263)
Q Consensus 109 DGrI~aIR~aLd~~G~~~v~im~y-~k~~ssgP-----FRd~---~~~yq~~-~~~~~~e~~~Di~EGAD~ImVKPg~~y 178 (263)
+|.+..|-+-+.+.|+.++.++.- ..+...++ |.+. ...|... +.+...++....++++|+|++-.|..-
T Consensus 19 ~ga~~~l~~~~~~~g~~~~lvv~g~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~v~~l~~~~~~~~d~iiavGGGs~ 98 (362)
T PRK10586 19 PGSIDHLHDFFTDEQLSRAVWIYGERAIAAAQPYLPPAFELPGAKHILFRGHCSESDVAQLAAASGDDRQVVIGVGGGAL 98 (362)
T ss_pred cCHHHHHHHHHHhcCCCeEEEEEChHHHHHHHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHhccCCCEEEEecCcHH
Confidence 467788888888888866555543 11111122 2221 1122222 233333444444568999999999999
Q ss_pred HHHHHHHHhhCCCCCeeec
Q psy15130 179 LDIISEVKSRHPAYPLFVY 197 (263)
Q Consensus 179 LDII~~ik~~~~~~Pi~aY 197 (263)
+|.-|-+.... ..|+++.
T Consensus 99 iD~aK~~a~~~-~~p~i~v 116 (362)
T PRK10586 99 LDTAKALARRL-GLPFVAI 116 (362)
T ss_pred HHHHHHHHhhc-CCCEEEE
Confidence 99999998764 5665544
No 80
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=26.86 E-value=92 Score=27.34 Aligned_cols=50 Identities=14% Similarity=0.262 Sum_probs=40.2
Q ss_pred hcCCCeeEec---CCccHHHHHHHHHhhCCCCCeeecccceeeccCchhHHHHHHHHH
Q psy15130 164 SQGADFLMVK---PALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAMEMI 218 (263)
Q Consensus 164 ~EGAD~ImVK---Pg~~yLDII~~ik~~~~~~Pi~aYqERvItVSGEyami~aAa~~~ 218 (263)
....|+++.= |+..-++.++++++++++.+++.+- ...+.+.+..|.+.|
T Consensus 44 ~~~pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vvvlt-----~~~~~~~v~~al~~G 96 (211)
T COG2197 44 ELKPDVVLLDLSMPGMDGLEALKQLRARGPDIKVVVLT-----AHDDPAYVIRALRAG 96 (211)
T ss_pred hcCCCEEEEcCCCCCCChHHHHHHHHHHCCCCcEEEEe-----ccCCHHHHHHHHHcC
Confidence 4557887754 8888999999999888888877655 777888888888887
No 81
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=26.15 E-value=69 Score=27.19 Aligned_cols=38 Identities=21% Similarity=0.400 Sum_probs=25.2
Q ss_pred hhcCCCeeEecCCccHHHHHHHHHhhCCCCCeeecccceeeccCchhHHH
Q psy15130 163 VSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANE 212 (263)
Q Consensus 163 i~EGAD~ImVKPg~~yLDII~~ik~~~~~~Pi~aYqERvItVSGEyami~ 212 (263)
+++|+|+||..+|+ -+.+|+.+ +.|++..+ +|| |.+++
T Consensus 31 ~~~g~dViIsRG~t-----a~~lr~~~-~iPVV~I~-----~s~-~Dil~ 68 (176)
T PF06506_consen 31 ESEGADVIISRGGT-----AELLRKHV-SIPVVEIP-----ISG-FDILR 68 (176)
T ss_dssp TTTT-SEEEEEHHH-----HHHHHCC--SS-EEEE--------H-HHHHH
T ss_pred HhcCCeEEEECCHH-----HHHHHHhC-CCCEEEEC-----CCH-hHHHH
Confidence 57999999999995 56677777 89999888 887 55554
No 82
>PRK01060 endonuclease IV; Provisional
Probab=25.68 E-value=1.6e+02 Score=25.97 Aligned_cols=45 Identities=7% Similarity=-0.056 Sum_probs=29.7
Q ss_pred HHHHHHHhH--hhHh--hcccccccCCCcccchhHHHHHHHHHhCCCCC
Q psy15130 82 QLVMAYSRY--IICI--ALHDAWQTRPIQTSATHIKDIRQKTANLSDTH 126 (263)
Q Consensus 82 ~~Al~~A~A--Ad~V--APsdmm~~~Psdm~DGrI~aIR~aLd~~G~~~ 126 (263)
+.++..++. .|.| .+..-....+..+.+..+..+|+.+++.|++-
T Consensus 15 ~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 15 EGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCC
Confidence 456666665 6666 32211222345677889999999999999964
No 83
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=25.60 E-value=3.6e+02 Score=25.33 Aligned_cols=102 Identities=12% Similarity=0.107 Sum_probs=62.7
Q ss_pred HHHHHHHhH--hhHhhc---ccccccCCCcccchhHHHHHHHHHhCCCCCceeeeeecccccccccccccccccchhHHH
Q psy15130 82 QLVMAYSRY--IICIAL---HDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQLNFLKHVQTNEFHCIARC 156 (263)
Q Consensus 82 ~~Al~~A~A--Ad~VAP---sdmm~~~Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~~ssgPFRd~~~~yq~~~~~~~ 156 (263)
..|++.|+| ||.|=- ...+ +++.+.++|+-+.+=+--.+.| .++.|+.-.+.+.+-|. .+.+ +
T Consensus 92 ~aal~iA~a~ga~FIRv~~~~g~~-~~d~G~~~~~a~e~~r~r~~l~-~~v~i~adV~~kh~~~l------~~~~----~ 159 (257)
T TIGR00259 92 VAALAIAMAVGAKFIRVNVLTGVY-ASDQGIIEGNAGELIRYKKLLG-SEVKILADIVVKHAVHL------GNRD----L 159 (257)
T ss_pred HHHHHHHHHhCCCEEEEccEeeeE-ecccccccccHHHHHHHHHHcC-CCcEEEeceeecccCcC------CCCC----H
Confidence 456677776 877632 2333 4566777888776644444445 68999988554443241 1111 2
Q ss_pred HHHHhch-hcC-CCeeEecCC----ccHHHHHHHHHhhCCCCCee
Q psy15130 157 IAQARDV-SQG-ADFLMVKPA----LPYLDIISEVKSRHPAYPLF 195 (263)
Q Consensus 157 ~e~~~Di-~EG-AD~ImVKPg----~~yLDII~~ik~~~~~~Pi~ 195 (263)
.|...|. ..| ||-|||-.- .+=.+.++++|+..++.|++
T Consensus 160 ~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~Pvl 204 (257)
T TIGR00259 160 ESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKETVKDTPVL 204 (257)
T ss_pred HHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeEE
Confidence 4445553 344 999998762 24578899999866678854
No 84
>KOG1676|consensus
Probab=24.99 E-value=1e+02 Score=32.53 Aligned_cols=57 Identities=26% Similarity=0.267 Sum_probs=43.3
Q ss_pred cCCCeeEecCCccHHHHHHHHHhhCCC----CC--eeecccceeeccCchhHHHHHHHHHHHhhccC
Q psy15130 165 QGADFLMVKPALPYLDIISEVKSRHPA----YP--LFVYQERCITVSGHFEANEKAMEMILEKIAED 225 (263)
Q Consensus 165 EGAD~ImVKPg~~yLDII~~ik~~~~~----~P--i~aYqERvItVSGEyami~aAa~~~l~kia~d 225 (263)
...++||+|-|- .||.+...++- +| ...--||++.|-|-.+.|..|++.|-+-|.+.
T Consensus 239 ~~VG~IIGkgGE----~IKklq~etG~KIQfkpDd~p~speR~~~IiG~~d~ie~Aa~lI~eii~~~ 301 (600)
T KOG1676|consen 239 SKVGIIIGKGGE----MIKKLQNETGAKIQFKPDDDPSSPERPAQIIGTVDQIEHAAELINEIIAEA 301 (600)
T ss_pred cceeeEEecCch----HHHHHhhccCceeEeecCCCCCCccceeeeecCHHHHHHHHHHHHHHHHHH
Confidence 457889999996 89998887542 12 11445999999999999999999885555444
No 85
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=24.99 E-value=1.1e+02 Score=28.82 Aligned_cols=52 Identities=27% Similarity=0.310 Sum_probs=39.2
Q ss_pred cCCCeeEe-----------cCCccHHHHHHHHHhhCCCCCeeecccceeeccC-chhHHHHHHHHHHHhhc
Q psy15130 165 QGADFLMV-----------KPALPYLDIISEVKSRHPAYPLFVYQERCITVSG-HFEANEKAMEMILEKIA 223 (263)
Q Consensus 165 EGAD~ImV-----------KPg~~yLDII~~ik~~~~~~Pi~aYqERvItVSG-Eyami~aAa~~~l~kia 223 (263)
.|+|.|=+ +|. -=+|+++++++.. +.|++.-. -|| ..+.++.+.+.|..|++
T Consensus 165 tg~DyLAvaiG~~hg~~~~~~~-l~~~~L~~i~~~~-~iPlV~hG-----~SGI~~e~~~~~i~~G~~kin 228 (281)
T PRK06806 165 TDVDALAVAIGNAHGMYNGDPN-LRFDRLQEINDVV-HIPLVLHG-----GSGISPEDFKKCIQHGIRKIN 228 (281)
T ss_pred hCCCEEEEccCCCCCCCCCCCc-cCHHHHHHHHHhc-CCCEEEEC-----CCCCCHHHHHHHHHcCCcEEE
Confidence 69999988 332 2468899999987 79999888 888 55777778877754443
No 86
>cd00374 RNase_T2 Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen.
Probab=24.96 E-value=52 Score=27.86 Aligned_cols=86 Identities=13% Similarity=0.079 Sum_probs=53.0
Q ss_pred HHHHHHhhCCCeEEE--eeeccccCCCCCccee--eeCCCcccccccccccchhchHHHHHHHHhH---hhHhhcccccc
Q psy15130 29 LSCLVLSCLPAFLWW--VQTCAMQRAKHLHCTL--HVKSNLTNANVFHVSENFCTDTQLVMAYSRY---IICIALHDAWQ 101 (263)
Q Consensus 29 ~~~~ik~~fP~l~v~--~DvCLceYT~HGHCGi--l~~dg~i~~Nd~tv~~~~~rla~~Al~~A~A---Ad~VAPsdmm~ 101 (263)
+...+.+..|++.-- .+.=--||..||.|.. ++++.+ .+.|+.+.+. -+...-....
T Consensus 63 l~~~l~~~w~~~~~~~~~~fw~hEW~KHGTC~~~~~~~~~Y---------------F~~a~~l~~~~ni~~~L~~~~i~- 126 (195)
T cd00374 63 LLDELNKYWPDLMPGKDSSFWKHEWNKHGTCSGTLLDQDDY---------------FRTALKLLDKLDLLSILAKAGIK- 126 (195)
T ss_pred HHHHHHhhCcccCCCCCchHHHHHHhcCceecCCcCCHHHH---------------HHHHHHHHHhCCHHHHHHHCCCc-
Confidence 446778888887765 4444569999999975 433333 2344554444 3444444444
Q ss_pred cCCCcccchhHHHHHHHHHhCCCCCceeeeee
Q psy15130 102 TRPIQTSATHIKDIRQKTANLSDTHKRLLQCS 133 (263)
Q Consensus 102 ~~Psdm~DGrI~aIR~aLd~~G~~~v~im~y~ 133 (263)
|++-..-+...|+.++...- .....+.+.
T Consensus 127 --p~~~~~~~~~~i~~ai~~~~-g~~~~l~C~ 155 (195)
T cd00374 127 --PSDGSTYTLAFIQNAIKAAT-GATPSLKCT 155 (195)
T ss_pred --CCCCceecHHHHHHHHHHHH-CCCcEEEec
Confidence 66555668888888887653 445555553
No 87
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.92 E-value=1.1e+02 Score=27.59 Aligned_cols=39 Identities=13% Similarity=0.003 Sum_probs=34.0
Q ss_pred HHHHhchhcCCCeeEecCCccH--HHHHHHHHhhCCCCCee
Q psy15130 157 IAQARDVSQGADFLMVKPALPY--LDIISEVKSRHPAYPLF 195 (263)
Q Consensus 157 ~e~~~Di~EGAD~ImVKPg~~y--LDII~~ik~~~~~~Pi~ 195 (263)
.|+..=.+-|||+|=+.|+..+ .+.|+.++.-+++.|++
T Consensus 108 tEi~~A~~~Ga~~vK~FPa~~~GG~~yikal~~plp~~~l~ 148 (201)
T PRK06015 108 SEVMALREEGYTVLKFFPAEQAGGAAFLKALSSPLAGTFFC 148 (201)
T ss_pred HHHHHHHHCCCCEEEECCchhhCCHHHHHHHHhhCCCCcEE
Confidence 5778888999999999999877 69999999888888766
No 88
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=23.46 E-value=3.4e+02 Score=24.83 Aligned_cols=85 Identities=12% Similarity=0.061 Sum_probs=52.2
Q ss_pred HHHHHHHhCCCCCceeeeeeccccc--ccccccccccccchhHHHHHHHhchh-cCCCeeEe------cCCccHHHHHHH
Q psy15130 114 DIRQKTANLSDTHKRLLQCSKTLLQ--LNFLKHVQTNEFHCIARCIAQARDVS-QGADFLMV------KPALPYLDIISE 184 (263)
Q Consensus 114 aIR~aLd~~G~~~v~im~y~k~~ss--gPFRd~~~~yq~~~~~~~~e~~~Di~-EGAD~ImV------KPg~~yLDII~~ 184 (263)
.++++|... +.++++-.|.+|- |.+++.. ++ .++....+ .||+.|-| .+|. ++.+++
T Consensus 40 ~~~~~l~~~---~~~vIaeik~~sps~g~i~~~~-----~~----~~~A~~~~~~GA~aisvlte~~~f~g~--~~~l~~ 105 (260)
T PRK00278 40 DFAAALRAG---KPAVIAEVKKASPSKGVIREDF-----DP----VEIAKAYEAGGAACLSVLTDERFFQGS--LEYLRA 105 (260)
T ss_pred CHHHHHhcC---CCeEEEEeeCCCCCCCccCCCC-----CH----HHHHHHHHhCCCeEEEEecccccCCCC--HHHHHH
Confidence 355666532 3688888777654 4444321 22 23345544 67999877 3354 788999
Q ss_pred HHhhCCCCCeeecccceeeccCchhHHHHHHHHH
Q psy15130 185 VKSRHPAYPLFVYQERCITVSGHFEANEKAMEMI 218 (263)
Q Consensus 185 ik~~~~~~Pi~aYqERvItVSGEyami~aAa~~~ 218 (263)
+++.. +.|+..-. -+.=+| |+..|.++|
T Consensus 106 v~~~v-~iPvl~kd----fi~~~~-qi~~a~~~G 133 (260)
T PRK00278 106 ARAAV-SLPVLRKD----FIIDPY-QIYEARAAG 133 (260)
T ss_pred HHHhc-CCCEEeee----ecCCHH-HHHHHHHcC
Confidence 99886 79977533 144455 677776666
No 89
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=22.99 E-value=1.1e+02 Score=29.59 Aligned_cols=28 Identities=14% Similarity=-0.035 Sum_probs=23.5
Q ss_pred HHHHHHHhhCCCeEEEeeeccccCCCCCcceeeeCCCc
Q psy15130 28 VLSCLVLSCLPAFLWWVQTCAMQRAKHLHCTLHVKSNL 65 (263)
Q Consensus 28 ~~~~~ik~~fP~l~v~~DvCLceYT~HGHCGil~~dg~ 65 (263)
...++|++--||++|+| ||+|++.+.+.
T Consensus 145 ~i~~Ll~~~~PDIlViT----------GHD~~~K~~~d 172 (287)
T PF05582_consen 145 KIYRLLEEYRPDILVIT----------GHDGYLKNKKD 172 (287)
T ss_pred HHHHHHHHcCCCEEEEe----------CchhhhcCCCC
Confidence 35688999999999997 99999987543
No 90
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=22.82 E-value=4.6e+02 Score=22.05 Aligned_cols=73 Identities=22% Similarity=0.333 Sum_probs=45.0
Q ss_pred chhHHHHHHHhchhcCCCeeEecCCcc--HHHHHHHHHhhCCCCCeeecccc-------eeecc-CchhHHHHHHHHHHH
Q psy15130 151 HCIARCIAQARDVSQGADFLMVKPALP--YLDIISEVKSRHPAYPLFVYQER-------CITVS-GHFEANEKAMEMILE 220 (263)
Q Consensus 151 ~~~~~~~e~~~Di~EGAD~ImVKPg~~--yLDII~~ik~~~~~~Pi~aYqER-------vItVS-GEyami~aAa~~~l~ 220 (263)
+..+....++.=+++|+|.|++-|..+ ..+++++++++ +.|++.+.-- .-.|. -++.+=+.+++..++
T Consensus 40 d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~--gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~ 117 (257)
T PF13407_consen 40 DPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAA--GIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAE 117 (257)
T ss_dssp THHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHT--TSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhc--CceEEEEeccccccccceeeeeccHHHHHHHHHHHHHH
Confidence 343333445555789999999998765 66899999986 4676665411 11111 245666666666666
Q ss_pred hhccC
Q psy15130 221 KIAED 225 (263)
Q Consensus 221 kia~d 225 (263)
+....
T Consensus 118 ~~~~~ 122 (257)
T PF13407_consen 118 KLGAK 122 (257)
T ss_dssp HHTTT
T ss_pred HhccC
Confidence 65544
No 91
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=22.67 E-value=1.1e+02 Score=30.13 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=31.1
Q ss_pred HHhchhcCCCeeEecCCcc----HHHHHHHHHhhCCCCCeeecc
Q psy15130 159 QARDVSQGADFLMVKPALP----YLDIISEVKSRHPAYPLFVYQ 198 (263)
Q Consensus 159 ~~~Di~EGAD~ImVKPg~~----yLDII~~ik~~~~~~Pi~aYq 198 (263)
...+.+.|+|+|.+-.+.- .+|.|+++|+.+|+.++++=+
T Consensus 115 ~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGN 158 (346)
T PRK05096 115 QILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGN 158 (346)
T ss_pred HHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEec
Confidence 3444457999999988654 578899999999888877655
No 92
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=22.62 E-value=1.6e+02 Score=27.73 Aligned_cols=62 Identities=18% Similarity=0.064 Sum_probs=37.8
Q ss_pred chHHHHHHHHhH-hhHhhcc-cc-------cc----cCCCcccchhHHHHHHHHHhCCCCCceeeeeeccccccccccc
Q psy15130 79 TDTQLVMAYSRY-IICIALH-DA-------WQ----TRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQLNFLKH 144 (263)
Q Consensus 79 rla~~Al~~A~A-Ad~VAPs-dm-------m~----~~Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~~ssgPFRd~ 144 (263)
.|++.|..+.++ ||+++-+ +- +| +.-..|.|-..++||. +|+.++.++.=--+-.+|.||+.
T Consensus 63 ~L~~~a~~Le~~GAd~i~l~~NT~H~~~d~iq~~~~iPllhIidaTa~~ik~----~g~kkvgLLgT~~Tm~~~fY~~~ 137 (230)
T COG1794 63 ILIDAAKKLERAGADFIVLPTNTMHKVADDIQKAVGIPLLHIIDATAKAIKA----AGAKKVGLLGTRFTMEQGFYRKR 137 (230)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhcCCCeehHHHHHHHHHHh----cCCceeEEeeccchHHhHHHHHH
Confidence 356788888888 9887722 11 11 1112344445554444 59999999876444555888873
No 93
>PRK13763 putative RNA-processing protein; Provisional
Probab=22.53 E-value=1.6e+02 Score=25.72 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=40.1
Q ss_pred CCeeEecCCccHHHHHHHHHhhCCCCCeeecccceeeccCchhHHHHHHHHHHHhhccCCC
Q psy15130 167 ADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAMEMILEKIAEDPS 227 (263)
Q Consensus 167 AD~ImVKPg~~yLDII~~ik~~~~~~Pi~aYqERvItVSGEyami~aAa~~~l~kia~dp~ 227 (263)
-+.||+|-|. .++.+.+.+ ..-+... ++-|.+.|.+..+..|.+++-. +....+
T Consensus 106 ~griIG~~G~----~~k~ie~~t-~~~i~i~-~~~v~i~G~~~~~~~A~~~I~~-li~g~~ 159 (180)
T PRK13763 106 KGRIIGEGGK----TRRIIEELT-GVDISVY-GKTVAIIGDPEQVEIAREAIEM-LIEGAP 159 (180)
T ss_pred hhheeCCCcH----HHHHHHHHH-CcEEEEc-CCEEEEEeCHHHHHHHHHHHHH-HHcCCC
Confidence 6789999997 889999887 4555544 4668899999999987777643 334433
No 94
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=22.33 E-value=1e+02 Score=25.58 Aligned_cols=82 Identities=7% Similarity=-0.004 Sum_probs=49.0
Q ss_pred HHHHHHHhH--hhHhhcccccccCCCcccchhHHHHHHHHHhCCCCCceeeeeecccccccccccccccccchhHHHHHH
Q psy15130 82 QLVMAYSRY--IICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQLNFLKHVQTNEFHCIARCIAQ 159 (263)
Q Consensus 82 ~~Al~~A~A--Ad~VAPsdmm~~~Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~~ssgPFRd~~~~yq~~~~~~~~e~ 159 (263)
+..+.-|+. ||+|.-|.++ .+++ ..+..+.++|.++|..++.++.=-. +-.++ . .+
T Consensus 43 e~~v~aa~e~~adii~iSsl~----~~~~-~~~~~~~~~L~~~g~~~i~vivGG~-----~~~~~--------~---~~- 100 (132)
T TIGR00640 43 EEIARQAVEADVHVVGVSSLA----GGHL-TLVPALRKELDKLGRPDILVVVGGV-----IPPQD--------F---DE- 100 (132)
T ss_pred HHHHHHHHHcCCCEEEEcCch----hhhH-HHHHHHHHHHHhcCCCCCEEEEeCC-----CChHh--------H---HH-
Confidence 345555555 9999987777 1111 2467888899999987666654210 11110 0 11
Q ss_pred HhchhcCCCeeEecCCccHHHHHHHHHhh
Q psy15130 160 ARDVSQGADFLMVKPALPYLDIISEVKSR 188 (263)
Q Consensus 160 ~~Di~EGAD~ImVKPg~~yLDII~~ik~~ 188 (263)
=.+-|.|-++ -||++..++++.+++.
T Consensus 101 --l~~~Gvd~~~-~~gt~~~~i~~~l~~~ 126 (132)
T TIGR00640 101 --LKEMGVAEIF-GPGTPIPESAIFLLKK 126 (132)
T ss_pred --HHHCCCCEEE-CCCCCHHHHHHHHHHH
Confidence 1125666554 5788889999888774
No 95
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=22.26 E-value=1.3e+02 Score=27.75 Aligned_cols=40 Identities=18% Similarity=0.338 Sum_probs=32.5
Q ss_pred CCeeEecCCccHHHHHHHHHhhCCCCCeeecccceeeccCchh
Q psy15130 167 ADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFE 209 (263)
Q Consensus 167 AD~ImVKPg~~yLDII~~ik~~~~~~Pi~aYqERvItVSGEya 209 (263)
-++|-.+.|..|-||++.++.+++...+.-|. +.|-||.+
T Consensus 17 I~vITs~~gAa~~D~~~~~~~r~~~~~~~~~p---~~vQG~~A 56 (319)
T PF02601_consen 17 IAVITSPTGAAIQDFLRTLKRRNPIVEIILYP---ASVQGEGA 56 (319)
T ss_pred EEEEeCCchHHHHHHHHHHHHhCCCcEEEEEe---ccccccch
Confidence 45777888999999999999988666677777 66888773
No 96
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=22.23 E-value=78 Score=29.81 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHhCCCCCceeeee
Q psy15130 110 THIKDIRQKTANLSDTHKRLLQC 132 (263)
Q Consensus 110 GrI~aIR~aLd~~G~~~v~im~y 132 (263)
.|+..+|.+|.++|+.++.+|-=
T Consensus 46 ~~le~Lr~kL~~~g~~~I~f~vV 68 (238)
T PF04592_consen 46 SRLEDLREKLENEGLSNISFMVV 68 (238)
T ss_pred HHHHHHHHHHHHCCCCceEEEEE
Confidence 38899999999999999998876
No 97
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=22.02 E-value=1.2e+02 Score=28.55 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=41.2
Q ss_pred hcCCCeeEecCCc-----------cHHHHHHHHHhhCCCCCeeecccceeeccCch-hHHHHHHHHHHHhhccC
Q psy15130 164 SQGADFLMVKPAL-----------PYLDIISEVKSRHPAYPLFVYQERCITVSGHF-EANEKAMEMILEKIAED 225 (263)
Q Consensus 164 ~EGAD~ImVKPg~-----------~yLDII~~ik~~~~~~Pi~aYqERvItVSGEy-ami~aAa~~~l~kia~d 225 (263)
++|+|.|=+==|. --+|+++++++..++.|++.-. -||=. +.++.+.+.|..|++-.
T Consensus 164 ~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhG-----GSGi~~e~~~~~i~~Gi~KiNv~ 232 (293)
T PRK07315 164 ETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHG-----GSGIPDDQIQEAIKLGVAKVNVN 232 (293)
T ss_pred HcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEEC-----CCCCCHHHHHHHHHcCCCEEEEc
Confidence 6899997655221 2378999999987459998888 77744 77888888886665543
No 98
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=21.91 E-value=1.1e+02 Score=28.06 Aligned_cols=77 Identities=10% Similarity=-0.001 Sum_probs=47.2
Q ss_pred HHHHHHHHhH-hhHhhcccccccCCCcc-cch--hHHHHHHHHHhCCCCCceeeeeecccccccccccccccccchhHHH
Q psy15130 81 TQLVMAYSRY-IICIALHDAWQTRPIQT-SAT--HIKDIRQKTANLSDTHKRLLQCSKTLLQLNFLKHVQTNEFHCIARC 156 (263)
Q Consensus 81 a~~Al~~A~A-Ad~VAPsdmm~~~Psdm-~DG--rI~aIR~aLd~~G~~~v~im~y~k~~ssgPFRd~~~~yq~~~~~~~ 156 (263)
..||+.-|++ |++|||== -|-.|+ .|| .|..|++.++..++.-+.+-++. |+.
T Consensus 116 ~~Qa~~Aa~aGa~yvsPyv---gRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaAS~--------r~~------------ 172 (222)
T PRK12656 116 VFQGLLAIEAGADYLAPYY---NRMENLNIDSNAVIGQLAEAIDRENSDSKILAASF--------KNV------------ 172 (222)
T ss_pred HHHHHHHHHCCCCEEeccc---chhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEEec--------CCH------------
Confidence 3799999999 99999830 000111 122 48888999999888543333332 221
Q ss_pred HHHHhchhcCCCeeEecCCccHHHHHHHH
Q psy15130 157 IAQARDVSQGADFLMVKPALPYLDIISEV 185 (263)
Q Consensus 157 ~e~~~Di~EGAD~ImVKPg~~yLDII~~i 185 (263)
.++..=...|||.+-+-|. +++++
T Consensus 173 ~~v~~a~~~G~d~vTvp~~-----vl~~l 196 (222)
T PRK12656 173 AQVNKAFALGAQAVTAGPD-----VFEAA 196 (222)
T ss_pred HHHHHHHHcCCCEEecCHH-----HHHHH
Confidence 2233334579999988886 55554
No 99
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=21.91 E-value=1.1e+02 Score=31.04 Aligned_cols=39 Identities=21% Similarity=0.338 Sum_probs=33.9
Q ss_pred CCeeEecCCccHHHHHHHHHhhCCCCCeeecccceeeccCch
Q psy15130 167 ADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208 (263)
Q Consensus 167 AD~ImVKPg~~yLDII~~ik~~~~~~Pi~aYqERvItVSGEy 208 (263)
-++|--+-|...-||++.+++++|..+++.|. .+|-||-
T Consensus 138 IGVITS~tgAairDIl~~~~rR~P~~~viv~p---t~VQG~~ 176 (440)
T COG1570 138 IGVITSPTGAALRDILHTLSRRFPSVEVIVYP---TLVQGEG 176 (440)
T ss_pred EEEEcCCchHHHHHHHHHHHhhCCCCeEEEEe---ccccCCC
Confidence 35677788999999999999999889999998 7788976
No 100
>PLN02417 dihydrodipicolinate synthase
Probab=21.84 E-value=5.2e+02 Score=23.66 Aligned_cols=112 Identities=10% Similarity=0.046 Sum_probs=64.3
Q ss_pred eeCCCcccccccccccchhchHHHHHHHHhH-hhHhhcccccccCCCcccchhHHHHHHHHHhCCCCCceeeeeeccccc
Q psy15130 60 HVKSNLTNANVFHVSENFCTDTQLVMAYSRY-IICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQ 138 (263)
Q Consensus 60 l~~dg~i~~Nd~tv~~~~~rla~~Al~~A~A-Ad~VAPsdmm~~~Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~~ss 138 (263)
+++||.|| .+.+. +..--+.+. +|-|.+....--.++-..+=|.+.++...+..+ .++.++.-...
T Consensus 13 f~~~g~iD------~~~~~---~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~-~~~pvi~gv~~--- 79 (280)
T PLN02417 13 YLPDGRFD------LEAYD---SLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-GKIKVIGNTGS--- 79 (280)
T ss_pred cCCCCCcC------HHHHH---HHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhC-CCCcEEEECCC---
Confidence 35677787 24434 444445556 777776666555566677788888888777654 35666654221
Q ss_pred ccccccccccccchhHHHHHHHhchhcCCCeeEecCCccH-------HHHHHHHHhhCCCCCeeecc
Q psy15130 139 LNFLKHVQTNEFHCIARCIAQARDVSQGADFLMVKPALPY-------LDIISEVKSRHPAYPLFVYQ 198 (263)
Q Consensus 139 gPFRd~~~~yq~~~~~~~~e~~~Di~EGAD~ImVKPg~~y-------LDII~~ik~~~~~~Pi~aYq 198 (263)
.+..+.+..++.=.+-|||.+|+-|-..+ .+..+++.+. . |++-|+
T Consensus 80 -----------~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~--~-pi~lYn 132 (280)
T PLN02417 80 -----------NSTREAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDM--G-PTIIYN 132 (280)
T ss_pred -----------ccHHHHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhh--C-CEEEEE
Confidence 12233333333334588998888764322 2233344442 3 888887
No 101
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=21.79 E-value=1.7e+02 Score=28.05 Aligned_cols=49 Identities=18% Similarity=0.181 Sum_probs=40.0
Q ss_pred cccccchhHHHHHHHhchh-cCCCeeEecCCccHHHHHHHHHhhCCCCCeee
Q psy15130 146 QTNEFHCIARCIAQARDVS-QGADFLMVKPALPYLDIISEVKSRHPAYPLFV 196 (263)
Q Consensus 146 ~~yq~~~~~~~~e~~~Di~-EGAD~ImVKPg~~yLDII~~ik~~~~~~Pi~a 196 (263)
.+|+-.+...++.+.+-+. .|||+|=...|--+.++|+++.++ ..|+++
T Consensus 86 ~sy~~s~~~a~~nA~r~~ke~gA~aVKlEGG~~~~~~i~~L~~~--gIPV~g 135 (268)
T COG0413 86 GSYEVSPEQALKNAARLMKEAGADAVKLEGGEEMAETIKRLTER--GIPVMG 135 (268)
T ss_pred cccCCCHHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHc--CCceEE
Confidence 4588777777777777788 779999999999999999999986 366554
No 102
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=21.72 E-value=1.4e+02 Score=29.72 Aligned_cols=61 Identities=13% Similarity=0.206 Sum_probs=39.5
Q ss_pred HHHHHhchhcCCCeeEecC----CccHHHHHHHHHhhCCCCCeeecccceeeccCchhHHHHHHHHHHHhh
Q psy15130 156 CIAQARDVSQGADFLMVKP----ALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAMEMILEKI 222 (263)
Q Consensus 156 ~~e~~~Di~EGAD~ImVKP----g~~yLDII~~ik~~~~~~Pi~aYqERvItVSGEyami~aAa~~~l~ki 222 (263)
..++..=++.|+|+|.+=. +....++++++|+++|+.++++=+ |+ -++..+.+.++|...+
T Consensus 155 ~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~-----V~-T~e~a~~l~~aGaD~I 219 (404)
T PRK06843 155 IERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGN-----IV-TKEAALDLISVGADCL 219 (404)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEe-----cC-CHHHHHHHHHcCCCEE
Confidence 3456666779999998543 456779999999999888865444 22 2344444555554333
No 103
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=21.01 E-value=2e+02 Score=22.75 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=33.9
Q ss_pred eEecCCccHHHHHHHHHhhCCCCC---eeecc----c-ceeeccCchhHHHHHHH
Q psy15130 170 LMVKPALPYLDIISEVKSRHPAYP---LFVYQ----E-RCITVSGHFEANEKAME 216 (263)
Q Consensus 170 ImVKPg~~yLDII~~ik~~~~~~P---i~aYq----E-RvItVSGEyami~aAa~ 216 (263)
|-++||++|-++...+.++.+..| ...|. | .-|.++||-+|=+ |+.
T Consensus 11 i~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~~~~~v~l~~e~~me~-aW~ 64 (78)
T cd06411 11 LRAPRGADVSSLRALLSQALPQQAQRGQLSYRAPGEDGHWVPISGEESLQR-AWQ 64 (78)
T ss_pred EEccCCCCHHHHHHHHHHHhcCChhhcEEEecCCCCCccEeecCcchHHHH-HHH
Confidence 568999999999999999974333 55663 3 4467888988865 454
No 104
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=21.00 E-value=1.5e+02 Score=28.77 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=16.0
Q ss_pred HHHHHhchhcCCCeeEec
Q psy15130 156 CIAQARDVSQGADFLMVK 173 (263)
Q Consensus 156 ~~e~~~Di~EGAD~ImVK 173 (263)
+-|..+-+++|||||--|
T Consensus 131 l~EAlrai~~GadmI~Tt 148 (293)
T PRK04180 131 LGEALRRIAEGAAMIRTK 148 (293)
T ss_pred HHHHHHHHHCCCCeeecc
Confidence 468889999999999998
No 105
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=20.93 E-value=2.3e+02 Score=27.24 Aligned_cols=59 Identities=14% Similarity=0.104 Sum_probs=44.9
Q ss_pred HHHHhchhcCCCeeEecCC------c----cH--HHHHHHHHhhCCC-CCeeecccceeeccCchhHHHHHHHHHHHh
Q psy15130 157 IAQARDVSQGADFLMVKPA------L----PY--LDIISEVKSRHPA-YPLFVYQERCITVSGHFEANEKAMEMILEK 221 (263)
Q Consensus 157 ~e~~~Di~EGAD~ImVKPg------~----~y--LDII~~ik~~~~~-~Pi~aYqERvItVSGEyami~aAa~~~l~k 221 (263)
+++.+-.+-|+|.||+-+. . .+ ..++.++.+.+ + .|+++-. --+....+.+|...|.+.
T Consensus 138 ~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~-~~iPViAAG-----GI~dg~~i~AAlalGA~g 209 (336)
T COG2070 138 REALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAV-DGIPVIAAG-----GIADGRGIAAALALGADG 209 (336)
T ss_pred HHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHh-cCCCEEEec-----CccChHHHHHHHHhccHH
Confidence 4667777889999998874 1 34 89999999998 6 7988766 555778888888877433
No 106
>PF00445 Ribonuclease_T2: Ribonuclease T2 family; InterPro: IPR001568 The fungal ribonucleases T2 from Aspergillus oryzae, M from Aspergillus saitoi and Rh from Rhizopus niveus are structurally and functionally related 30 Kd glycoproteins [] that cleave the 3'-5' internucleotide linkage of RNA via a nucleotide 2',3'-cyclic phosphate intermediate (3.1.27.1 from EC). Two histidines residues have been shown [, ] to be involved in the catalytic mechanism of RNase T2 and Rh. These residues and the region around them are highly conserved in a number of other RNAses that have been found to be evolutionary related to these fungal enzymes.; GO: 0003723 RNA binding, 0033897 ribonuclease T2 activity; PDB: 1IOO_A 3D3Z_A 1UCG_B 1UCC_A 1J1F_A 1V9H_A 1UCD_A 1J1G_A 1UCA_A 1BK7_A ....
Probab=20.72 E-value=86 Score=26.67 Aligned_cols=92 Identities=14% Similarity=0.081 Sum_probs=58.3
Q ss_pred HHHHHHhhCCCeEEEe--eeccccCCCCCcceeeeCCCcccccccccccchhchHHHHHHHHhH---hhHhhcccccccC
Q psy15130 29 LSCLVLSCLPAFLWWV--QTCAMQRAKHLHCTLHVKSNLTNANVFHVSENFCTDTQLVMAYSRY---IICIALHDAWQTR 103 (263)
Q Consensus 29 ~~~~ik~~fP~l~v~~--DvCLceYT~HGHCGil~~dg~i~~Nd~tv~~~~~rla~~Al~~A~A---Ad~VAPsdmm~~~ 103 (263)
+...++...|++.=-. +.=--||..||-|.-.+. . | . ....+.|+.+.+. .++.+-+...
T Consensus 66 ~~~~L~~~Wp~~~~~~~~~fw~hEW~KHGtC~~~~~---~--~---~----~~YF~~a~~l~~~~~~~~~L~~~gI~--- 130 (189)
T PF00445_consen 66 LKSELDKYWPDLKNSNSESFWKHEWEKHGTCSGMDF---I--D---Q----YDYFSTALKLYKKLNLPKILANAGIV--- 130 (189)
T ss_dssp GHHHHHHHSTBSSSSHHHHHHHHHHHHTGGGGTTTS---S--S---H----HHHHHHHHHHHHHCHHHHHHHHTTHC---
T ss_pred HhhhhhhhhhhhccchhhhhHHhcceeeeEEcCCch---h--h---H----HHHHHHHHHHHHhccchHHHhhcccC---
Confidence 4557788888874322 344568999999988762 1 1 1 1244677777777 4444433344
Q ss_pred CCcccchhHHHHHHHHHhCCCCCceeeeeecc
Q psy15130 104 PIQTSATHIKDIRQKTANLSDTHKRLLQCSKT 135 (263)
Q Consensus 104 Psdm~DGrI~aIR~aLd~~G~~~v~im~y~k~ 135 (263)
|++-..=.+..|+++|.++.-.....+.+.+.
T Consensus 131 p~~~~~~~~~~i~~al~~~~~~~~~~l~C~~~ 162 (189)
T PF00445_consen 131 PSNGKTYSLSDIRDALKQAFNGVRPQLRCSRN 162 (189)
T ss_dssp SCSSEEEEHHHHHHHHHHHHTSSGEEEEEECT
T ss_pred CCccccccHHHHHHHHHHHcCCCceEEEEecC
Confidence 66655558999999998875344566666554
No 107
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=20.37 E-value=83 Score=29.17 Aligned_cols=19 Identities=5% Similarity=-0.088 Sum_probs=17.3
Q ss_pred HHHHHHHhhCCCeEEEeee
Q psy15130 28 VLSCLVLSCLPAFLWWVQT 46 (263)
Q Consensus 28 ~~~~~ik~~fP~l~v~~Dv 46 (263)
=++|.||+.|||-.|.||.
T Consensus 45 ~aV~~lr~~~pd~~IvAD~ 63 (217)
T COG0269 45 RAVRALRELFPDKIIVADL 63 (217)
T ss_pred HHHHHHHHHCCCCeEEeee
Confidence 4789999999999999996
Done!