RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15130
(263 letters)
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase,
tetrapyrrole biosynthesis, reactio intermediate, lyase;
HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB:
1e51_A* 2z0i_A 2z1b_A
Length = 330
Score = 83.7 bits (208), Expect = 6e-19
Identities = 31/56 (55%), Positives = 35/56 (62%), Gaps = 10/56 (17%)
Query: 160 ARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAM 215
RDV +GAD LMVKP +PYLDI+ EVK +HP PL VY VSG E AM
Sbjct: 239 DRDVREGADMLMVKPGMPYLDIVREVKDKHPDLPLAVYH-----VSG-----EFAM 284
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel,
tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces
cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A*
1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A*
1aw5_A
Length = 342
Score = 83.0 bits (206), Expect = 1e-18
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 160 ARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAM 215
RD+S+GAD ++VKP+ YLDI+ + P+ Y VSG E AM
Sbjct: 250 ERDMSEGADGIIVKPSTFYLDIMRDASEICKDLPICAYH-----VSG-----EYAM 295
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole
biosynthesis, ALAD, porphyrin biosynt heme biosynthesis,
lyase; 2.6A {Prosthecochloris vibrioformis} SCOP:
c.1.10.3 PDB: 2c1h_A*
Length = 328
Score = 75.2 bits (186), Expect = 5e-16
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 11/56 (19%)
Query: 160 ARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAM 215
D+ +GAD +MVKP L YLDI+ K R P+ +Y VSG E AM
Sbjct: 240 ELDIVEGADIVMVKPGLAYLDIVWRTKERFDV-PVAIYH-----VSG-----EYAM 284
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49}
Length = 356
Score = 75.3 bits (186), Expect = 6e-16
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 11/56 (19%)
Query: 160 ARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAM 215
D S+GAD LMVKP LPYLD++++++ + P+ Y VSG E AM
Sbjct: 254 EADASEGADMLMVKPGLPYLDVLAKIREKSKL-PMVAYH-----VSG-----EYAM 298
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A
{Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A*
1b4e_A
Length = 323
Score = 74.5 bits (184), Expect = 1e-15
Identities = 26/56 (46%), Positives = 31/56 (55%), Gaps = 11/56 (19%)
Query: 160 ARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAM 215
D +QGAD LMVKPA YLDI+ E++ R P+ YQ VSG E AM
Sbjct: 233 LLDEAQGADCLMVKPAGAYLDIVRELRERTE-LPIGAYQ-----VSG-----EYAM 277
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution,
metalloenzyme, porphobilinogen synthase, protein
engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A*
1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A
2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Length = 337
Score = 74.5 bits (184), Expect = 1e-15
Identities = 28/56 (50%), Positives = 34/56 (60%), Gaps = 11/56 (19%)
Query: 160 ARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAM 215
A D+++GAD +MVKP +PYLDI+ VK A P FVYQ VSG E AM
Sbjct: 247 AADLAEGADMVMVKPGMPYLDIVRRVKDEFRA-PTFVYQ-----VSG-----EYAM 291
>1we8_A Tudor and KH domain containing protein; structural genomics, riken
structural genomics/proteomics initiative, RSGI, RNA
binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Length = 104
Score = 51.4 bits (123), Expect = 7e-09
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAEDPSSGSCSNVSYALR 239
R I +SG + A +ILEK++ED S +
Sbjct: 60 LSRLIKISGTQKEVAAAKHLILEKVSEDEELRKRIAHSASGP 101
>1x4m_A FAR upstream element binding protein 1; KH domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
d.51.1.1
Length = 94
Score = 47.8 bits (114), Expect = 1e-07
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAEDPSSGS 230
++ + ++G ++A EM+LE I + S S
Sbjct: 60 ADKPLRITGDPYKVQQAKEMVLELIRDQGSGPS 92
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA
binding protein; NMR {Homo sapiens}
Length = 106
Score = 46.3 bits (110), Expect = 4e-07
Identities = 8/46 (17%), Positives = 15/46 (32%)
Query: 199 ERCITVSGHFEANEKAMEMILEKIAEDPSSGSCSNVSYALRYGTEG 244
E+ + G + E A +I + + S + G G
Sbjct: 55 EKIAHIMGPPDRCEHAARIINDLLQSLRSGPPGPPGGPGMPPGGRG 100
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA
binding protein; NMR {Homo sapiens}
Length = 107
Score = 44.9 bits (106), Expect = 2e-06
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAEDPSSGSCS 232
+ + G + + A ++I EKI
Sbjct: 53 NFKLFIIRGSPQQIDHAKQLIEEKIEGPLCPVGPG 87
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo
sapiens}
Length = 85
Score = 43.1 bits (102), Expect = 4e-06
Identities = 5/27 (18%), Positives = 15/27 (55%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAE 224
++ + + G ++A EM+++ + E
Sbjct: 59 VDKPLRIIGDPYKVQQACEMVMDILRE 85
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH
domain, hairpin, RNA-binding protein complex; HET: 5BU;
1.94A {Homo sapiens} PDB: 2ann_A*
Length = 178
Score = 44.1 bits (104), Expect = 1e-05
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAEDP 226
Q R +TVSG E N KA+E+I++KI EDP
Sbjct: 149 QNRVVTVSGEPEQNRKAVELIIQKIQEDP 177
Score = 36.0 bits (83), Expect = 0.004
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 182 ISEVKSRHPAYPLFVYQERCITVSGHFEANEKAMEMILEKIAEDPSSGS 230
+S+ K +P ER + G EA I EKI E P + +
Sbjct: 41 LSKSKDFYPGTT-----ERVCLIQGTIEALNAVHGFIAEKIREMPQNVA 84
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 1e-05
Identities = 41/241 (17%), Positives = 73/241 (30%), Gaps = 68/241 (28%)
Query: 33 VLSCLPAFLWW--VQTCAMQRAKHLHCTLHVKSNLTNANVFHVSENFCTDTQLVMAYSRY 90
+LS +W+ +++ M LH K +L V + T
Sbjct: 391 LLS----LIWFDVIKSDVMVVVNKLH-----KYSL-------VEKQPKEST--------- 425
Query: 91 IICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQC---SKTLLQLNFLKHVQT 147
I++ I +++ K N H+ ++ KT + +
Sbjct: 426 ---ISIPS------IYL------ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 148 NEFHC-IARCIAQARDVSQGADFLMVKPALPYLDI--ISEVKSRHPAYP----------- 193
F+ I + + F MV +LD + E K RH +
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMV-----FLDFRFL-EQKIRHDSTAWNASGSILNTL 524
Query: 194 --LFVYQERCITVSGHFEANEKAMEMILEKIAEDPSSGSCSN-VSYALRYGTEGWGELLH 250
L Y+ +E A+ L KI E+ ++ + AL E E H
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
Query: 251 R 251
+
Sbjct: 585 K 585
Score = 29.8 bits (66), Expect = 1.2
Identities = 25/170 (14%), Positives = 54/170 (31%), Gaps = 39/170 (22%)
Query: 96 LHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQLNFLKHVQTNE-FHCIA 154
L +T Q S T + RL ++ + N V + + +
Sbjct: 94 LMSPIKTEQRQPSM--------MTRMYIEQRDRLYNDNQVFAKYN----VSRLQPYLKLR 141
Query: 155 RCIAQARDVSQGADFLMV-------KPALPYLDIISEV---KSRHPAYPLFVYQERCITV 204
+ + + R A +++ K + +V ++ + +
Sbjct: 142 QALLELRP----AKNVLIDGVLGSGKTWV-----ALDVCLSYKVQCKMDFKIFW---LNL 189
Query: 205 SGHFEANEKAMEMILEKIAE--DPSSGSCSNVSYALRYGTEGWGELLHRF 252
+ + E +EM L+K+ DP+ S S+ S ++ L R
Sbjct: 190 -KNCNSPETVLEM-LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA
binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Length = 82
Score = 41.9 bits (99), Expect = 1e-05
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 199 ERCITVSGHFEANEKAMEMILEKIAEDPSSGS 230
R +T++G + A +I +++ + G
Sbjct: 50 GRQVTITGSAASISLAQYLINARLSSEKGMGC 81
>1x4n_A FAR upstream element binding protein 1; KH domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
d.51.1.1 PDB: 2opu_A
Length = 92
Score = 41.3 bits (97), Expect = 2e-05
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 199 ERCITVSGHFEANEKAMEMILEKIAEDPSSGS 230
ER ++G E+ + A ++ + + + S S
Sbjct: 59 ERSCMLTGTPESVQSAKRLLDQIVEKGRSGPS 90
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain,
cell projection, cytoplasm, nucleus, phosphoprotein,
translation regulation; 2.75A {Homo sapiens}
Length = 163
Score = 40.1 bits (94), Expect = 2e-04
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAEDPSSGSCSNVSYALR 239
+ R + ++G EA KA I K+ E+ G V
Sbjct: 47 KVRMVIITGPPEAQFKAQGRIYGKLKEENFFGPKEEVKLETH 88
Score = 39.4 bits (92), Expect = 3e-04
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAEDPS 227
+ + + GHF A++ A I + +A+
Sbjct: 130 DQVIVKIIGHFYASQMAQRKIRDILAQVKQ 159
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding
protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1
PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Length = 73
Score = 38.0 bits (89), Expect = 2e-04
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 199 ERCITVSGHFEANEKAMEMILEKIAED 225
ER IT++G A KA MI++K+ ED
Sbjct: 47 ERIITLAGPTNAIFKAFAMIIDKLEED 73
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA
binding protein, transcription factor, hnRNP K, CT
element, C-MYC oncogene; NMR {Homo sapiens} SCOP:
d.51.1.1 PDB: 1khm_A
Length = 89
Score = 38.1 bits (89), Expect = 3e-04
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 199 ERCITVSGHFEANEKAMEMILEKIAEDPS 227
+R IT++G + + A ++ + +
Sbjct: 58 DRIITITGTQDQIQNAQYLLQNSVKQYSG 86
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta
fold, DNA binding protein; 0.95A {Homo sapiens} SCOP:
d.51.1.1 PDB: 1zzj_A 1zzi_A
Length = 82
Score = 37.6 bits (88), Expect = 3e-04
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 199 ERCITVSGHFEANEKAMEMILEKIAEDPS 227
+R IT++G + + A ++ + +
Sbjct: 51 DRIITITGTQDQIQNAQYLLQNSVKQYSG 79
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA
binding protein/DNA complex; 1.60A {Homo sapiens}
Length = 76
Score = 37.3 bits (87), Expect = 4e-04
Identities = 5/27 (18%), Positives = 15/27 (55%)
Query: 199 ERCITVSGHFEANEKAMEMILEKIAED 225
+R +T++G + A +I +++ +
Sbjct: 49 DRQVTITGSAASISLAQYLINVRLSSE 75
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding
motif, protein/RNA structure, RNA binding protein/RNA
complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Length = 87
Score = 37.3 bits (87), Expect = 5e-04
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAED 225
+ R +T++G A + A +I +++ +
Sbjct: 49 RNRRVTITGSPAATQAAQYLISQRVTYE 76
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET:
DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Length = 174
Score = 37.9 bits (88), Expect = 0.001
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 198 QERCITVSGHFEANEKAMEMILEKI 222
+ T+ G + + A ++I EKI
Sbjct: 150 NMKLFTIRGTPQQIDYARQLIEEKI 174
Score = 35.2 bits (81), Expect = 0.009
Identities = 7/51 (13%), Positives = 15/51 (29%)
Query: 197 YQERCITVSGHFEANEKAMEMILEKIAEDPSSGSCSNVSYALRYGTEGWGE 247
ER ++G + + A E+I + + + G
Sbjct: 45 TPERIAQITGPPDRAQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNW 95
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain,
alpha-beta fold RNA-binding motif, immune system; 2.00A
{Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Length = 76
Score = 36.1 bits (84), Expect = 0.001
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 199 ERCITVSGHFEANEKAMEMILEKIAE 224
R +T++G A + A +I +++
Sbjct: 50 NRRVTITGSPAATQAAQYLISQRVTY 75
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA
binding protein, KH domain, KSRP, posttranscriptional
regulation, mRNA decay; NMR {Homo sapiens}
Length = 164
Score = 37.5 bits (87), Expect = 0.001
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAE 224
E+ + G + E A +I + +
Sbjct: 134 PEKIAHIMGPPDRCEHAARIINDLLQS 160
Score = 35.9 bits (83), Expect = 0.004
Identities = 7/39 (17%), Positives = 17/39 (43%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAEDPSSGSCSNVSY 236
++ + + G ++A EM+++ + E G Y
Sbjct: 47 VDKPLRIIGDPYKVQQACEMVMDILRERDQGGFGDRNEY 85
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding,
DNA-binding, nucleus, phosph ribonucleoprotein,
RNA-binding, RNA binding protein; NMR {Homo sapiens}
Length = 160
Score = 37.4 bits (87), Expect = 0.001
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAEDPSSGSCSNVS 235
ER IT++G A KA MI++K+ ED SS ++ +
Sbjct: 46 PERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTA 83
Score = 37.4 bits (87), Expect = 0.001
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAE 224
ER IT++G ++ + ++ I + E
Sbjct: 133 TERAITIAGIPQSIIECVKQICVVMLE 159
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.003
Identities = 40/292 (13%), Positives = 74/292 (25%), Gaps = 113/292 (38%)
Query: 18 VSSR-LVLS--CLVLSCLVLSCLPAFLWWVQTCAMQRAKHLHCTLHVKSNLTNANVFHVS 74
S+R L LS L LV P +++ A Q + + L +
Sbjct: 4 YSTRPLTLSHGSLEHVLLV----PTASFFI---ASQLQEQFNKILP-----------EPT 45
Query: 75 ENFCTDTQ------LVMAYSRYIICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKR 128
E F D + LV + Y+ + P + +
Sbjct: 46 EGFAADDEPTTPAELVGKFLGYV-------SSLVEPSKVGQF----------------DQ 82
Query: 129 LLQCSKTLLQLNFLKHVQTNEFHCIARCIAQARDVSQGADFLMVK--------------- 173
+L T + +L + N+ H +A + Q D + ++K
Sbjct: 83 VLNLCLTEFENCYL---EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 174 ---PAL----------------------PYLDIISEVKSRHPAYPLFVYQERCITVSGHF 208
AL Y + E++ + Y + V I
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE---ELRDLYQTYHVLV--GDLI------ 188
Query: 209 EANEKAMEMILEKIAEDPSSGSCSNVSYALRYGTEGWGELLHRFTRTSVGFL 260
K L ++ + + W L + +L
Sbjct: 189 ----KFSAETLSELIRTTLD---AEKVFTQGLNILEW--LENPSNTPDKDYL 231
Score = 33.9 bits (77), Expect = 0.059
Identities = 29/132 (21%), Positives = 44/132 (33%), Gaps = 31/132 (23%)
Query: 3 PASLVGLESTI-----MSCLVSSR-------LVLSCLVL-------SCLVLSCLPAFLWW 43
P SL GL T+ S L SR L S L S L++
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD 442
Query: 44 VQTCAMQ-RAKHLHCTLHVKSNLTNANVFHVSENFCTDTQLVMAYSRYIICIALHDAWQT 102
+ + AK + V +++ +S + ++V II + + W
Sbjct: 443 LVKNNVSFNAKDIQIP--VYDTFDGSDLRVLSGSI--SERIVDC----IIRLPVK--W-E 491
Query: 103 RPIQTSATHIKD 114
Q ATHI D
Sbjct: 492 TTTQFKATHILD 503
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol
metabolism, beta-alpha-alpha-beta-BETA-alpha structure,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.51.1.1
Length = 94
Score = 34.3 bits (79), Expect = 0.006
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 199 ERCITVSGHFEANEKAMEMILEKIAED-----PSSG 229
I ++G E EKA +L AE PSSG
Sbjct: 59 SNQIKITGTKEGIEKARHEVLLISAEQDKRSGPSSG 94
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol
metabolism, beta-alpha-alpha-beta-BETA-alpha structure,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.51.1.1
Length = 97
Score = 32.9 bits (75), Expect = 0.019
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAE-----DPSSG 229
+ IT++G+ + E A + IL + E PSSG
Sbjct: 61 PQDQITITGYEKNTEAARDAILRIVGELEQMSGPSSG 97
>2dgr_A Ring finger and KH domain-containing protein 1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 83
Score = 31.8 bits (72), Expect = 0.034
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAEDPSSGS 230
+E V+G E ++A E I I S
Sbjct: 50 KEPVFAVTGMPENVDRAREEIEAHITLRSGPSS 82
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol
metabolism, beta-alpha-alpha-beta-BETA-alpha structure,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.51.1.1
Length = 95
Score = 29.4 bits (66), Expect = 0.34
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAE-----DPSSG 229
C+TV+G E E+A++ IL E PSSG
Sbjct: 59 DPNCVTVTGLPENVEEAIDHILNLEEEYLADSGPSSG 95
>3no6_A Transcriptional activator TENA; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis}
Length = 248
Score = 30.1 bits (67), Expect = 0.57
Identities = 12/149 (8%), Positives = 39/149 (26%), Gaps = 1/149 (0%)
Query: 80 DTQLVMAYSRYIICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQL 139
D + ++ I + + ++ I+ + + + + +
Sbjct: 63 DASYLKEFTN-IYAMLIPKMSSMEDVKFLVEQIEFMLEGEVEAHEVLADFINEPYEEIVK 121
Query: 140 NFLKHVQTNEFHCIARCIAQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQE 199
+ + + A AR+ + M Y I V +
Sbjct: 122 EKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESVTSK 181
Query: 200 RCITVSGHFEANEKAMEMILEKIAEDPSS 228
S + + +++++ + S
Sbjct: 182 WFQFYSTEMDELVDVFDQLMDRLTKHCSE 210
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol
metabolism, beta-alpha-alpha-beta-BETA-alpha structure,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.51.1.1
Length = 104
Score = 27.1 bits (60), Expect = 2.2
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAE 224
Q I ++G ++A +LE++ E
Sbjct: 58 QSDIIAITGLAANLDRAKAGLLERVKE 84
>3c8o_A Regulator of ribonuclease activity A; RRAA, PAO1, RNAse E
regulater, hydrolase regulator; HET: PGE PG4; 1.90A
{Pseudomonas aeruginosa}
Length = 162
Score = 27.5 bits (62), Expect = 3.3
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 10/58 (17%)
Query: 119 TANLSDTHKRLLQCSKTLLQLNFLKHVQTNEFHCIARCIAQARDVSQGADFLMVKPAL 176
T +L D + L+Q + + F + + D +VK +
Sbjct: 5 TPDLCDAYPELVQVVEPMFSN----------FGGRDSFGGEIVTIKCFEDNSLVKEQV 52
>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich
repeat, nuclear transport; 2.8A {Saccharomyces
cerevisiae} SCOP: d.17.4.2
Length = 221
Score = 27.4 bits (60), Expect = 4.3
Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 2/55 (3%)
Query: 201 CITVSGHFEANEKAMEMILEKIAEDPSSGSCSNVSYALRYGTEGWGELLHRFTRT 255
IT+ G FE E + ++ + T F RT
Sbjct: 129 VITLHGFFE--ETGKPELESNKKTGKNNYQKNRRYNHGYNSTSNNKLSKKSFDRT 181
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2;
HET: MSE; 1.30A {Methylobacillus flagellatus} PDB:
3l83_A*
Length = 250
Score = 26.7 bits (59), Expect = 6.6
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 195 FVYQERCITVSGHFEANEKAMEMILEKIAED 225
+V + I H E + E+
Sbjct: 164 YVLDDLHIGFQCHIEMQAHMVREWCSISPEE 194
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic
bacterium ds2-3r} SCOP: a.103.1.1
Length = 378
Score = 27.1 bits (61), Expect = 7.1
Identities = 6/31 (19%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 210 ANEKAMEMILEKIAEDPSSGSCSNVSYALRY 240
ANE M E+I + + +
Sbjct: 224 ANEAVMHT-FEEIGIRKDESLDEAATRSKAW 253
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 26.9 bits (60), Expect = 8.9
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 223 AEDPSSGSCSNVSYALRYGTEGW 245
A+DP N+ Y W
Sbjct: 362 AQDPDRYMQQNIRYTKLSDPANW 384
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 26.5 bits (59), Expect = 9.8
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 223 AEDPSSGSCSNVSYALRYGTEGW 245
A+DP +SY + W
Sbjct: 362 AQDPDKQQIQKLSYFIGNDPARW 384
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.134 0.417
Gapped
Lambda K H
0.267 0.0837 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,734,925
Number of extensions: 200080
Number of successful extensions: 733
Number of sequences better than 10.0: 1
Number of HSP's gapped: 731
Number of HSP's successfully gapped: 51
Length of query: 263
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 171
Effective length of database: 4,133,061
Effective search space: 706753431
Effective search space used: 706753431
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.1 bits)