RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15130
(263 letters)
>d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 340
Score = 49.2 bits (117), Expect = 2e-07
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 143 KHVQTNEFHCIARCIAQARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCI 202
K Q A RD+S+GAD ++VKP+ YLDI+ + P+ Y
Sbjct: 233 KCYQLPPAGRGLARRALERDMSEGADGIIVKPSTFYLDIMRDASEICKDLPICAYH---- 288
Query: 203 TVSGHFEANEKAM 215
VSG E AM
Sbjct: 289 -VSG-----EYAM 295
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 39.6 bits (92), Expect = 4e-05
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAEDP 226
R I +SG + A +ILEK++ED
Sbjct: 60 LSRLIKISGTQKEVAAAKHLILEKVSEDE 88
>d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Prosthecochloris
vibrioformis [TaxId: 1098]}
Length = 319
Score = 40.7 bits (95), Expect = 1e-04
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 11/56 (19%)
Query: 160 ARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAM 215
D+ +GAD +MVKP L YLDI+ K R P+ +Y VSG E AM
Sbjct: 231 ELDIVEGADIVMVKPGLAYLDIVWRTKERFD-VPVAIYH-----VSG-----EYAM 275
>d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Human (Homo sapiens) [TaxId:
9606]}
Length = 320
Score = 39.5 bits (92), Expect = 2e-04
Identities = 31/56 (55%), Positives = 35/56 (62%), Gaps = 10/56 (17%)
Query: 160 ARDVSQGADFLMVKPALPYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAM 215
RDV +GAD LMVKP +PYLDI+ EVK +HP PL VY VSG E AM
Sbjct: 229 DRDVREGADMLMVKPGMPYLDIVREVKDKHPDLPLAVYH-----VSG-----EFAM 274
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 36.3 bits (84), Expect = 3e-04
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAE 224
ER IT++G A KA MI++K+ E
Sbjct: 45 PERIITLAGPTNAIFKAFAMIIDKLEE 71
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 79
Score = 36.3 bits (84), Expect = 3e-04
Identities = 5/27 (18%), Positives = 14/27 (51%)
Query: 199 ERCITVSGHFEANEKAMEMILEKIAED 225
ER ++G E+ + A ++ + + +
Sbjct: 52 ERSCMLTGTPESVQSAKRLLDQIVEKG 78
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2,
KH3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 35.6 bits (82), Expect = 5e-04
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIA 223
+ R +T++G A + A +I +++
Sbjct: 49 RNRRVTITGSPAATQAAQYLISQRVT 74
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 81
Score = 35.7 bits (82), Expect = 6e-04
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAE 224
++ + ++G ++A EM+LE I +
Sbjct: 53 ADKPLRITGDPYKVQQAKEMVLELIRD 79
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 84
Score = 35.6 bits (82), Expect = 7e-04
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAE 224
+ IT++G+ + E A + IL + E
Sbjct: 54 PQDQITITGYEKNTEAARDAILRIVGE 80
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 34.9 bits (80), Expect = 9e-04
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 198 QERCITVSGHFEANEKAMEMILEKI 222
+ T+ G + + A ++I EKI
Sbjct: 47 NMKLFTIRGTPQQIDYARQLIEEKI 71
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 75
Score = 34.9 bits (80), Expect = 0.001
Identities = 5/27 (18%), Positives = 15/27 (55%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAE 224
++R IT++G + + A ++ + +
Sbjct: 47 EDRIITITGTQDQIQNAQYLLQNSVKQ 73
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 34.8 bits (80), Expect = 0.001
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAE 224
ER ++G + + A E+I + +
Sbjct: 46 PERIAQITGPPDRAQHAAEIITDLLRS 72
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 70
Score = 34.4 bits (79), Expect = 0.001
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIA 223
R +T++G + A +I +++
Sbjct: 45 SGRQVTITGSAASISLAQYLINARLS 70
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 33.5 bits (77), Expect = 0.004
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAE 224
I ++G E EKA +L AE
Sbjct: 51 PSNQIKITGTKEGIEKARHEVLLISAE 77
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 33.2 bits (76), Expect = 0.005
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAE 224
Q I ++G ++A +LE++ E
Sbjct: 51 QSDIIAITGLAANLDRAKAGLLERVKE 77
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1,
ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 84
Score = 32.8 bits (75), Expect = 0.007
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAEDPSSG 229
Q I V+G A E I E + G
Sbjct: 38 QNGLIWVNGDRRKVSIAEEAIYLIEQEAHTEG 69
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 82
Score = 31.7 bits (72), Expect = 0.014
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 197 YQERCITVSGHFEANEKAMEMILEKIAE 224
+ + G EKA + +L E
Sbjct: 51 SGSDTVVIRGPSSDVEKAKKQLLHLAEE 78
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 30.2 bits (68), Expect = 0.059
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 198 QERCITVSGHFEANEKAMEMILEKIAE 224
C+TV+G E E+A++ IL E
Sbjct: 52 DPNCVTVTGLPENVEEAIDHILNLEEE 78
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 28.6 bits (64), Expect = 0.13
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 199 ERCITVSGHFEANEKAMEMILEKIA 223
I + G + ++A +LE +
Sbjct: 47 SNLIRIEGDPQGVQQAKRELLELAS 71
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 90
Score = 28.7 bits (64), Expect = 0.24
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 195 FVYQERCITVSGHFEANEKAMEMILEKIAE 224
F E IT+ G E A E I + +
Sbjct: 57 FTEGEDKITLEGPTEDVSVAQEQIEGMVKD 86
>d1vhra_ c.45.1.1 (A:) VH1-related dual-specificity phosphatase, VHR
{Human (Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 29.0 bits (64), Expect = 0.38
Identities = 14/113 (12%), Positives = 34/113 (30%), Gaps = 3/113 (2%)
Query: 89 RYIICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQLNFLKHVQTN 148
+++ A ++ + I +DT + L + +
Sbjct: 50 THVLNAAEGRSFMHVNTNANFYKDSGITYLGIKANDTQEFNLSAYFERAADFIDQALAQK 109
Query: 149 EFHCIARCIA-QARDVSQGADFLMVKPALPYLDIISEVKSRHPAYP--LFVYQ 198
+ C +R + +LM++ + +S V+ P F+ Q
Sbjct: 110 NGRVLVHCREGYSRSPTLVIAYLMMRQKMDVKSALSIVRQNREIGPNDGFLAQ 162
>d1sxjb1 a.80.1.1 (B:231-322) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 92
Score = 27.5 bits (61), Expect = 0.63
Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 5/80 (6%)
Query: 61 VKSNLTNANVFHVSENFCTDTQLVMAYSRYIICIALHDAWQTRPIQTSATHIKDIRQKTA 120
VK L +N S YS I + + ++ I++
Sbjct: 6 VKKMLLASN-LEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKE--- 61
Query: 121 NLSDTHKRLLQCSKTLLQLN 140
+ TH R+L+ T LQL
Sbjct: 62 -IGLTHMRILEGVGTYLQLA 80
>d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 91
Score = 26.7 bits (59), Expect = 1.0
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 80 DTQLVMAYSRYIICIALHDAWQTRPIQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQL 139
+T + +S + LH+ + T + + L T RL + +QL
Sbjct: 26 NTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWL----LFTTDSRLNNGTNEHIQL 81
Query: 140 N 140
Sbjct: 82 L 82
>d1of5a_ d.17.4.2 (A:) NTF2-like domain of mRNA export factor MEX67
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 221
Score = 27.3 bits (60), Expect = 1.5
Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 2/55 (3%)
Query: 201 CITVSGHFEANEKAMEMILEKIAEDPSSGSCSNVSYALRYGTEGWGELLHRFTRT 255
IT+ G FE E + ++ + T F RT
Sbjct: 129 VITLHGFFE--ETGKPELESNKKTGKNNYQKNRRYNHGYNSTSNNKLSKKSFDRT 181
>d1hx6a2 b.121.2.1 (A:245-384) Coat protein p3 {Bacteriophage prd1
[TaxId: 10658]}
Length = 140
Score = 26.6 bits (58), Expect = 2.2
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 64 NLTNANVFHVSENFCTDTQLVMAYSRYIICIALHDAWQTRPIQTSATHIKDIRQKTANLS 123
NL N+ ++ N Q Y RY+ IA+ D + + T I + Q+TAN S
Sbjct: 15 NLENSAQAGLTPNVDFVVQYANLY-RYLSTIAVFDNGGSF---NAGTDINYLSQRTANFS 70
Query: 124 DTHK 127
DT K
Sbjct: 71 DTRK 74
>d1wjxa_ b.111.1.1 (A:) Small protein B (SmpB) {Thermus thermophilus
[TaxId: 274]}
Length = 120
Score = 26.3 bits (58), Expect = 2.3
Identities = 8/51 (15%), Positives = 17/51 (33%)
Query: 105 IQTSATHIKDIRQKTANLSDTHKRLLQCSKTLLQLNFLKHVQTNEFHCIAR 155
I T +K +R + + + R L L + + + + R
Sbjct: 21 IALKGTEVKSLRAGKVDFTGSFARFEDGELYLENLYIAPYEKGSYANVDPR 71
>d2bpa1_ b.121.5.1 (1:) Microvirus capsid proteins {Bacteriophage
phi-X174 [TaxId: 10847]}
Length = 426
Score = 26.7 bits (59), Expect = 3.6
Identities = 9/65 (13%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 177 PYLDIISEVKSRHPAYPLFVYQERCITVSGHFEANEKAMEMILEKIAEDPSSGSCSNVSY 236
+L I+ ++ P + Y + +F+A + ++ +P+ + + Y
Sbjct: 107 AFLGTINPDTNKIPKHLFQGYL---NIYNNYFKA-----PWMPDRTEANPNELNQDDARY 158
Query: 237 ALRYG 241
R
Sbjct: 159 GFRCC 163
>d2bsca1 b.2.3.5 (A:1-176) Fimbrial adhesin F17-AG lectin domain
{Escherichia coli [TaxId: 562]}
Length = 176
Score = 25.9 bits (56), Expect = 4.3
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 38 PAFLWWVQTCAMQRAKHLHCTLHVKSNLTNANVFHVSENFC 78
P+ + +T AM ++ T + K NANV+H+S+ FC
Sbjct: 14 PSLGSYSRTHAMDNLPFVYDTRN-KIGYQNANVWHISKGFC 53
>d1q40b_ d.17.4.2 (B:) NTF2-like domain of mRNA export factor MEX67
{Yeast (Candida albicans) [TaxId: 5476]}
Length = 205
Score = 25.8 bits (56), Expect = 5.2
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 201 CITVSGHFEANEKAMEMILEKIAEDPSSGSCSNVSYALRYGTEGWGELLHRFTRTSV 257
IT+ G F+ E A + + PS + Y + F RT V
Sbjct: 123 MITLHGSFD--EVAQPEVDGSASSAPSGPRGGS-RYHSGPKHKRIPLSKKSFDRTFV 176
>d1f8ea_ b.68.1.1 (A:) Influenza neuraminidase {Influenza A virus,
different strains [TaxId: 11320]}
Length = 388
Score = 25.5 bits (56), Expect = 6.6
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 224 EDPSSGSCSN-VSYALRYGTEGWG 246
DP+ G C++ G +G+
Sbjct: 249 NDPTVGKCNDPYPGNNNNGVKGFS 272
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.134 0.417
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 923,767
Number of extensions: 39890
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 33
Length of query: 263
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 179
Effective length of database: 1,254,276
Effective search space: 224515404
Effective search space used: 224515404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.1 bits)