BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15131
(529 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|H Chain H, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|G Chain G, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|F Chain F, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 467
Score = 312 bits (800), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 185/488 (37%), Positives = 263/488 (53%), Gaps = 29/488 (5%)
Query: 5 VKPPDVLPLGLKPKKKWDVG-GIKRANWKTINTQKLSEKSFWVKVKEEELASPDILTGLA 63
V VLP GL PKK + ++R NW + LS+ FW KVKE+ + ++ L
Sbjct: 7 VPAAPVLPFGLTPKKVYKPEVQLRRPNWSKFVAEDLSQDCFWTKVKEDRFENNELFAKLT 66
Query: 64 QKFSSKPANKKADDNVDKCGTLKRYWTARQRRTSKKADDNVDKCGTLKRVKALKVLDSKA 123
FS++ KA D+ G ++ +++ K D SK
Sbjct: 67 LAFSAQTKTSKAKK--DQEGGEEKKSVQKKKVKELKVLD------------------SKT 106
Query: 124 AQNLSILLGGSLKHYSYEEVKLSILRCDTNILSGNVLEQLISYLPPPDQLQRLKELSGDY 183
AQNLSI LG Y+E+K IL + +L+ ++++ LI +P P+QL+ L EL +Y
Sbjct: 107 AQNLSIFLGSF--RMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEY 164
Query: 184 ANLTEAEQFAVTIAEIKRLLPRLKSMHFKQHFQEMYTDCHKNIINGKQACEEVKQSXXXX 243
+L E+EQF V + + RL PRL ++ FK F E + I++ ACEE+++S
Sbjct: 165 DDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFS 224
Query: 244 XXXXXXXXMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPEC 303
+GNYMN+GSRN GAFGF I+FL KL TK + K TLLH+L + E PE
Sbjct: 225 SLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEV 284
Query: 304 LKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEP 363
LKF DEL HV++A+RVS + +Q S+ QM+ I ++E D+QN A +E DKF+E M
Sbjct: 285 LKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAA--TDEKDKFVEKMTS 342
Query: 364 FAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQEN 423
F K+ +++ L M NM TLY +L +++ FD ++EEFF D+ F++ F QA +EN
Sbjct: 343 FVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKEN 402
Query: 424 IKLREAEEKSIXXXXXXXXXXXXXXXXXXXXXXLIDMTTDQTQQGVMDSLLEALQTGSAF 483
K RE EEK LIDM + + GVMDSLLEALQ+G+AF
Sbjct: 403 QKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETGVMDSLLEALQSGAAF 462
Query: 484 TREQRRKR 491
RRKR
Sbjct: 463 ----RRKR 466
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|F Chain F, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|G Chain G, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|H Chain H, Autoinhibited Formin Mdia1 Structure
Length = 457
Score = 305 bits (781), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 178/473 (37%), Positives = 257/473 (54%), Gaps = 25/473 (5%)
Query: 26 IKRANWKTINTQKLSEKSFWVKVKEEELASPDILTGLAQKFSSKPANKKADDNVDKCGTL 85
++R NW + LS+ FW KVKE+ + ++ L FS++ KA D+ G
Sbjct: 10 LRRPNWSKFVAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKK--DQEGGE 67
Query: 86 KRYWTARQRRTSKKADDNVDKCGTLKRVKALKVLDSKAAQNLSILLGGSLKHYSYEEVKL 145
++ +++ K D SK AQNLSI LG Y+E+K
Sbjct: 68 EKKSVQKKKVKELKVLD------------------SKTAQNLSIFLGSF--RMPYQEIKN 107
Query: 146 SILRCDTNILSGNVLEQLISYLPPPDQLQRLKELSGDYANLTEAEQFAVTIAEIKRLLPR 205
IL + +L+ ++++ LI +P P+QL+ L EL +Y +L E+EQF V + + RL PR
Sbjct: 108 VILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQFGVVMGTVPRLRPR 167
Query: 206 LKSMHFKQHFQEMYTDCHKNIINGKQACEEVKQSXXXXXXXXXXXXMGNYMNSGSRNGGA 265
L ++ FK F E + I++ ACEE+++S +GNYMN+GSRN GA
Sbjct: 168 LNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGA 227
Query: 266 FGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQ 325
FGF I+FL KL TK + K TLLH+L + E PE LKF DEL HV++A+RVS + +Q
Sbjct: 228 FGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQ 287
Query: 326 NSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTL 385
S+ QM+ I ++E D+QN A +E DKF+E M F K+ +++ L M NM TL
Sbjct: 288 KSLDQMKKQIADVERDVQNFPAA--TDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETL 345
Query: 386 YGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIXXXXXXXXXXX 445
Y +L +++ FD ++EEFF D+ F++ F QA +EN K RE EEK
Sbjct: 346 YKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEK 405
Query: 446 XXXXXXXXXXXLIDMTTDQTQQGVMDSLLEALQTGSAFTREQRRKRQNDRPMG 498
LIDM + + GVMDSLLEALQ+G+AF R +R RQ +R G
Sbjct: 406 ERLEKQQKREQLIDMNAEGDETGVMDSLLEALQSGAAF-RRKRGPRQVNRKAG 457
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|B Chain B, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|C Chain C, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|D Chain D, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
Length = 340
Score = 258 bits (660), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 135/313 (43%), Positives = 192/313 (61%), Gaps = 4/313 (1%)
Query: 120 DSKAAQNLSILLGGSLKHYSYEEVKLSILRCDTNILSGNVLEQLISYLPPPDQLQRLKEL 179
DSK AQNLSI LG Y+E+K IL + +L+ ++++ LI +P P+QL+ L EL
Sbjct: 13 DSKTAQNLSIFLGSF--RMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSEL 70
Query: 180 SGDYANLTEAEQFAVTIAEIKRLLPRLKSMHFKQHFQEMYTDCHKNIINGKQACEEVKQS 239
+Y +L E+EQF V + + RL PRL ++ FK F E + I++ ACEE+++S
Sbjct: 71 KEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKS 130
Query: 240 XXXXXXXXXXXXMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQK 299
+GNYMN+GSRN GAFGF I+FL KL TK + K TLLH+L + E
Sbjct: 131 ENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCEND 190
Query: 300 FPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLE 359
PE LKF DEL HV++A+RVS + +Q S+ QM+ I ++E D+QN A +E DKF+E
Sbjct: 191 HPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAA--TDEKDKFVE 248
Query: 360 IMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQA 419
M F K+ +++ L M NM TLY +L +++ FD ++EEFF D+ F++ F QA
Sbjct: 249 KMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQA 308
Query: 420 WQENIKLREAEEK 432
+EN K RE EEK
Sbjct: 309 VKENQKRRETEEK 321
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment
Length = 483
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 100/350 (28%), Positives = 171/350 (48%), Gaps = 15/350 (4%)
Query: 85 LKRYWTARQRRTS---------KKADDNVDKCGTLKRVKALKVLDSKAAQNLSILLGGSL 135
L+R ++A QR+ K+AD D + +VK L V+D + AQN +ILL S
Sbjct: 50 LERTFSAYQRQQDFFVNSNSKQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILL--SR 107
Query: 136 KHYSYEEVKLSILRCDTN-ILSGNVLEQLISYLPPPDQLQRLKELSGDYANLTEAEQFAV 194
S +E+K +IL D L ++LEQL+ ++P + L+E + + +A++F
Sbjct: 108 LKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLF 167
Query: 195 TIAEIKRLLPRLKSMHFKQHFQEMYTDCHKNIINGKQACEEVKQSXXXXXXXXXXXXMGN 254
++ I RL+S++FK+ F E + + + EEV +S GN
Sbjct: 168 EMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGN 227
Query: 255 YMNSGSRNGGAFGFEINFLTKLSSTK-DIENKTTLLHYLVDTIEQKFPECLKFGDELLHV 313
YMN G R G A+GF+I+ L K++ TK I+ TLLHYL+ +E K+P L +EL +
Sbjct: 228 YMNKGQR-GNAYGFKISSLNKIADTKSSIDKNITLLHYLITIVENKYPSVLNLNEELRDI 286
Query: 314 DRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKIT 373
+AA+V+ + I + + +K +ET+++ K P DKF+ ++ F +
Sbjct: 287 PQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQP-PQPGDKFVSVVSQFITVASFSFS 345
Query: 374 LLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQEN 423
+ ++ L+ + + + +EFF F + +A QEN
Sbjct: 346 DVEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGIFDQFLQAVSEAKQEN 395
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|B Chain B, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|C Chain C, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|D Chain D, Crystal Structure Of Human Daam1 Fh2
Length = 419
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 113/416 (27%), Positives = 193/416 (46%), Gaps = 24/416 (5%)
Query: 13 LGLKPKKK---WDVGGIKRANWKTINTQKLSEKSFWVKVKEEELASPDILTGLAQKFSSK 69
+GL KKK +K NW + KL E + W ++ + ++ L L + FS
Sbjct: 1 MGLALKKKSIPQPTNALKSFNWSKLPENKL-EGTVWTEIDDTKVFKILDLEDLERTFS-- 57
Query: 70 PANKKADDNVDKCGTLKRYWTARQRRTSKKADDNVDKCGTLKRVKALKVLDSKAAQNLSI 129
A ++ D + K+AD D + +VK L V+D + AQN +I
Sbjct: 58 -AYQRQQD-----------FFVNSNSKQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNI 105
Query: 130 LLGGSLKHYSYEEVKLSILRCDTN-ILSGNVLEQLISYLPPPDQLQRLKELSGDYANLTE 188
LL S S +E+K +IL D L ++LEQL+ ++P + L+E + + +
Sbjct: 106 LL--SRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLLEEHKHELDRMAK 163
Query: 189 AEQFAVTIAEIKRLLPRLKSMHFKQHFQEMYTDCHKNIINGKQACEEVKQSXXXXXXXXX 248
A++F ++ I RL+S++FK+ F E + + + EEV +S
Sbjct: 164 ADRFLFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEV 223
Query: 249 XXXMGNYMNSGSRNGGAFGFEINFLTKLSSTK-DIENKTTLLHYLVDTIEQKFPECLKFG 307
GNYMN G R G A+GF+I+ L K++ TK I+ TLLHYL+ +E K+P L
Sbjct: 224 VLAFGNYMNKGQR-GNAYGFKISSLNKIADTKSSIDKNITLLHYLITIVENKYPSVLNLN 282
Query: 308 DELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKE 367
+EL + +AA+V+ + I + + +K +ET+++ K P DKF+ ++ F
Sbjct: 283 EELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQP-PQPGDKFVSVVSQFITV 341
Query: 368 VRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQEN 423
+ + ++ L+ + + + +EFF F + +A QEN
Sbjct: 342 ASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGIFDQFLQAVSEAKQEN 397
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|E Chain E, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|C Chain C, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|B Chain B, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
Length = 402
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 115/220 (52%), Gaps = 12/220 (5%)
Query: 118 VLDSKAAQNLSILLGGSLKHYSYEEVKLSILRCDTNILSGNVLEQLISYLPPPDQLQRLK 177
+L++ A+NL+I L + + S EE+ +I D L + +E L+ +LP +++ L+
Sbjct: 86 LLEANRAKNLAITLRKAGR--SAEEICRAIHTFDLQTLPVDFVECLMRFLPTEAEVKLLR 143
Query: 178 ELSGDYANLTE---AEQFAVTIAEIKRLLPRLKSMHFKQHFQ---EMYTDCHKNIINGKQ 231
+ + L E ++F + ++++RL R+ M F +FQ +M T II
Sbjct: 144 QYERERQPLEELAAEDRFMLLFSKVERLTQRMAGMAFLGNFQDNLQMLTPQLNAII---A 200
Query: 232 ACEEVKQSXXXXXXXXXXXXMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHY 291
A VK S +GNYMNS S+ G +GF++ L L TK + K TLLH+
Sbjct: 201 ASASVKSSQKLKQMLEIILALGNYMNS-SKRGAVYGFKLQSLDLLLDTKSTDRKMTLLHF 259
Query: 292 LVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQM 331
+ T+++K+PE F EL V++AA VS + + ++++
Sbjct: 260 IALTVKEKYPELANFWQELHFVEKAAAVSLENVLLDVKEL 299
>pdb|1Y64|B Chain B, Bni1p Formin Homology 2 Domain Complexed With Atp-actin
Length = 443
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 97/229 (42%), Gaps = 5/229 (2%)
Query: 205 RLKSMHFKQHFQEMYTDCHKNIINGKQACEEVKQSXXXXXXXXXXXXMGNYMNSGSRNGG 264
R++++ ++ Y + + +A +++S +GN+MN S+
Sbjct: 202 RMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSKQ-- 259
Query: 265 AFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVI 324
A GF+++ L +L+ KD N T L+Y+ + +P F EL V +VS + +
Sbjct: 260 AQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELEPVLDVVKVSIEQL 319
Query: 325 QNSIRQMENNIKNLE--TDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNM 382
N + +I N+E +I N + + DK L P E R+K LL + K
Sbjct: 320 VNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLT 379
Query: 383 MTLYGDLAEFYTFDK-NIYTLEEFFTDIKTFKDSFYQAWQENIKLREAE 430
+ + L Y D + + FF F + + +A +N+ E E
Sbjct: 380 IMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLAAEEEE 428
>pdb|1UX4|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
pdb|1UX4|B Chain B, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
Length = 410
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 97/229 (42%), Gaps = 5/229 (2%)
Query: 205 RLKSMHFKQHFQEMYTDCHKNIINGKQACEEVKQSXXXXXXXXXXXXMGNYMNSGSRNGG 264
R++++ ++ Y + + +A +++S +GN+MN S+
Sbjct: 173 RMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSKQ-- 230
Query: 265 AFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVI 324
A GF+++ L +L+ KD N T L+Y+ + +P F EL V +VS + +
Sbjct: 231 AQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELEPVLDVVKVSIEQL 290
Query: 325 QNSIRQMENNIKNLE--TDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNM 382
N + +I N+E +I N + + DK L P E R+K LL + K
Sbjct: 291 VNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLT 350
Query: 383 MTLYGDLAEFYTFDK-NIYTLEEFFTDIKTFKDSFYQAWQENIKLREAE 430
+ + L Y D + + FF F + + +A +N+ E E
Sbjct: 351 IMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLAAEEEE 399
>pdb|1UX5|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Flexibly Tethered Dimer Architecture
Length = 411
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 97/229 (42%), Gaps = 5/229 (2%)
Query: 205 RLKSMHFKQHFQEMYTDCHKNIINGKQACEEVKQSXXXXXXXXXXXXMGNYMNSGSRNGG 264
R++++ ++ Y + + +A +++S +GN+MN S+
Sbjct: 179 RMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSKQ-- 236
Query: 265 AFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVI 324
A GF+++ L +L+ KD N T L+Y+ + +P F EL V +VS + +
Sbjct: 237 AQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELEPVLDVVKVSIEQL 296
Query: 325 QNSIRQMENNIKNLE--TDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNM 382
N + +I N+E +I N + + DK L P E R+K LL + K
Sbjct: 297 VNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLT 356
Query: 383 MTLYGDLAEFYTFDK-NIYTLEEFFTDIKTFKDSFYQAWQENIKLREAE 430
+ + L Y D + + FF F + + +A +N+ E E
Sbjct: 357 IMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLAAEEEE 405
>pdb|2BAP|D Chain D, Crystal Structure Of The N-Terminal Mdia1 Armadillo Repeat
Region And Dimerisation Domain In Complex With The Mdia1
Autoregulatory Domain (Dad)
pdb|2BAP|C Chain C, Crystal Structure Of The N-Terminal Mdia1 Armadillo Repeat
Region And Dimerisation Domain In Complex With The Mdia1
Autoregulatory Domain (Dad)
Length = 56
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 23/29 (79%)
Query: 457 LIDMTTDQTQQGVMDSLLEALQTGSAFTR 485
LIDM + + GVMDSLLEALQ+G+AF R
Sbjct: 25 LIDMNAEGDETGVMDSLLEALQSGAAFRR 53
>pdb|2WVK|A Chain A, Mannosyl-3-Phosphoglycerate Synthase From Thermus
Thermophilus Hb27 Apoprotein
pdb|2WVK|B Chain B, Mannosyl-3-Phosphoglycerate Synthase From Thermus
Thermophilus Hb27 Apoprotein
pdb|2WVL|A Chain A, Mannosyl-3-Phosphoglycerate Synthase From Thermus
Thermophilus Hb27 In Complex With Gdp-Alpha-D-Mannose
And Mg(Ii)
pdb|2WVL|B Chain B, Mannosyl-3-Phosphoglycerate Synthase From Thermus
Thermophilus Hb27 In Complex With Gdp-Alpha-D-Mannose
And Mg(Ii)
Length = 391
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 165 SYLPPPDQLQRLKELSGDYANLTEAE--QFAVTIAEIKRLLPRLKSMHFKQHFQEMYTDC 222
Y P +L L EL G L + E Q V I +I+ P L +H ++M C
Sbjct: 267 GYAVEPQELVSLLELYGGVFPLEDEEVLQHGVEIFQIETRNPHLHENKGDEHIRDMLLAC 326
Query: 223 HKNIINGKQACEEVKQS 239
+ + K A EEV+QS
Sbjct: 327 LATVYHSKLATEEVRQS 343
>pdb|2WVM|A Chain A, H309a Mutant Of Mannosyl-3-phosphoglycerate Synthase From
Thermus Thermophilus Hb27 In Complex With
Gdp-alpha-d-mannose And Mg(ii)
pdb|2WVM|B Chain B, H309a Mutant Of Mannosyl-3-phosphoglycerate Synthase From
Thermus Thermophilus Hb27 In Complex With
Gdp-alpha-d-mannose And Mg(ii)
Length = 391
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 165 SYLPPPDQLQRLKELSGDYANLTEAE--QFAVTIAEIKRLLPRLKSMHFKQHFQEMYTDC 222
Y P +L L EL G L + E Q V I +I+ P L +H ++M C
Sbjct: 267 GYAVEPQELVSLLELYGGVFPLEDEEVLQHGVEIFQIETRNPALHENKGDEHIRDMLLAC 326
Query: 223 HKNIINGKQACEEVKQS 239
+ + K A EEV+QS
Sbjct: 327 LATVYHSKLATEEVRQS 343
>pdb|2F31|B Chain B, Crystal Structure Of The Autoinhibitory Switch In Formin
Mdia1; The DidDAD COMPLEX
Length = 20
Score = 32.7 bits (73), Expect = 0.52, Method: Composition-based stats.
Identities = 14/18 (77%), Positives = 17/18 (94%)
Query: 466 QQGVMDSLLEALQTGSAF 483
+ GVMDSLLEALQ+G+AF
Sbjct: 2 ETGVMDSLLEALQSGAAF 19
>pdb|2ZKR|II Chain i, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 165
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 8 PDVLPLGLKPKKKWDVGGIKRANWKTIN-TQKLSEKSFWVKVKEEELASPDILTGLAQKF 66
P + PLGL PKK D +WK + T KL+ ++ +++ AS I+ L +
Sbjct: 30 PKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKE-- 87
Query: 67 SSKPANKKADDNVDKCGTL 85
P ++K N+ G +
Sbjct: 88 --PPRDRKKQKNIKHSGNI 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,794,487
Number of Sequences: 62578
Number of extensions: 513408
Number of successful extensions: 1484
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1437
Number of HSP's gapped (non-prelim): 22
length of query: 529
length of database: 14,973,337
effective HSP length: 103
effective length of query: 426
effective length of database: 8,527,803
effective search space: 3632844078
effective search space used: 3632844078
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)