Query psy15131
Match_columns 529
No_of_seqs 264 out of 986
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 21:22:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15131.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15131hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1924|consensus 100.0 7E-102 2E-106 814.1 40.5 475 11-517 610-1086(1102)
2 smart00498 FH2 Formin Homology 100.0 5.6E-81 1.2E-85 665.1 43.4 429 18-478 1-432 (432)
3 PF02181 FH2: Formin Homology 100.0 2.3E-73 5E-78 597.2 34.7 368 18-417 2-370 (370)
4 KOG1923|consensus 100.0 5.4E-53 1.2E-57 447.8 29.3 375 18-431 362-741 (830)
5 KOG1925|consensus 100.0 3.4E-48 7.3E-53 392.8 33.7 357 25-424 283-651 (817)
6 KOG1922|consensus 100.0 8.2E-43 1.8E-47 400.4 32.3 381 23-430 392-793 (833)
7 PF06345 Drf_DAD: DRF Autoregu 96.7 0.001 2.2E-08 35.0 1.5 15 468-482 1-15 (15)
8 smart00498 FH2 Formin Homology 90.3 3.4 7.4E-05 44.6 12.4 109 313-423 318-431 (432)
9 PF12325 TMF_TATA_bd: TATA ele 73.6 41 0.0009 29.6 9.9 50 366-417 64-113 (120)
10 PF10234 Cluap1: Clusterin-ass 67.3 78 0.0017 31.9 11.5 103 240-342 79-192 (267)
11 COG5178 PRP8 U5 snRNP spliceos 66.6 4 8.8E-05 47.8 2.6 16 5-20 8-23 (2365)
12 KOG0994|consensus 62.4 3E+02 0.0065 33.4 16.0 22 240-261 1468-1489(1758)
13 KOG2675|consensus 59.0 5 0.00011 42.4 1.5 17 180-196 451-467 (480)
14 KOG1924|consensus 53.6 1.5E+02 0.0033 34.2 11.6 57 289-345 845-913 (1102)
15 KOG1962|consensus 52.6 2.3E+02 0.005 27.6 14.4 69 189-258 11-79 (216)
16 PRK10132 hypothetical protein; 51.8 86 0.0019 27.1 7.7 43 355-397 44-86 (108)
17 PRK15244 virulence protein Spv 50.4 7 0.00015 43.0 1.0 12 2-13 363-374 (591)
18 PF07200 Mod_r: Modifier of ru 48.6 2E+02 0.0044 25.8 10.8 47 373-428 99-145 (150)
19 KOG4673|consensus 48.1 1.5E+02 0.0033 33.6 10.5 51 370-422 904-954 (961)
20 PF04108 APG17: Autophagy prot 44.4 4.3E+02 0.0093 28.3 16.1 32 402-433 334-365 (412)
21 KOG4302|consensus 44.2 2.4E+02 0.0051 32.2 11.6 103 321-423 63-172 (660)
22 PRK11637 AmiB activator; Provi 42.4 4.6E+02 0.0099 28.1 15.9 29 363-391 103-131 (428)
23 smart00806 AIP3 Actin interact 41.2 4.9E+02 0.011 28.0 16.1 68 320-387 251-327 (426)
24 COG4575 ElaB Uncharacterized c 40.9 2.3E+02 0.005 24.2 8.6 72 322-397 11-83 (104)
25 smart00503 SynN Syntaxin N-ter 40.4 2.2E+02 0.0049 23.9 11.3 64 322-387 11-74 (117)
26 KOG3080|consensus 40.4 3.3E+02 0.0071 27.8 10.6 43 352-395 132-174 (328)
27 PRK11637 AmiB activator; Provi 40.2 5E+02 0.011 27.8 16.9 25 361-385 108-132 (428)
28 PF04420 CHD5: CHD5-like prote 40.1 1.5E+02 0.0034 27.3 8.1 65 322-392 36-102 (161)
29 KOG2072|consensus 37.9 5.8E+02 0.012 29.9 13.2 28 367-394 726-753 (988)
30 PF10805 DUF2730: Protein of u 36.9 2.7E+02 0.0058 23.8 9.0 69 316-391 32-100 (106)
31 PF04728 LPP: Lipoprotein leuc 36.5 1.9E+02 0.0041 21.9 8.0 24 321-344 5-28 (56)
32 PRK10404 hypothetical protein; 35.0 2.8E+02 0.0061 23.5 8.3 72 322-397 8-80 (101)
33 PHA00728 hypothetical protein 33.6 89 0.0019 27.3 4.9 25 320-344 6-30 (151)
34 cd07639 BAR_ACAP1 The Bin/Amph 33.5 4.4E+02 0.0096 25.3 12.0 25 319-343 2-26 (200)
35 PF08359 TetR_C_4: YsiA-like p 32.8 1.3E+02 0.0029 26.0 6.3 23 403-425 56-78 (133)
36 KOG4603|consensus 29.7 4.1E+02 0.0088 24.9 8.7 89 307-407 106-195 (201)
37 PF05957 DUF883: Bacterial pro 28.4 3E+02 0.0064 22.7 7.3 71 323-397 2-73 (94)
38 KOG0243|consensus 28.4 1.1E+03 0.024 28.4 14.1 135 247-387 321-472 (1041)
39 PF07106 TBPIP: Tat binding pr 24.7 5.5E+02 0.012 23.6 11.9 57 321-391 81-137 (169)
40 PF03800 Nuf2: Nuf2 family; I 24.4 1.1E+02 0.0023 27.6 4.1 37 134-176 8-44 (146)
41 PF06160 EzrA: Septation ring 24.3 4.9E+02 0.011 29.1 10.2 88 298-396 75-162 (560)
42 PF14523 Syntaxin_2: Syntaxin- 23.7 4.2E+02 0.009 21.8 9.9 57 326-392 3-59 (102)
43 PF07431 DUF1512: Protein of u 23.1 4.5E+02 0.0097 27.6 8.7 68 358-425 35-104 (355)
44 COG4046 Uncharacterized protei 22.8 3.5E+02 0.0076 27.9 7.6 61 364-424 55-116 (368)
45 PF10458 Val_tRNA-synt_C: Valy 22.6 3.1E+02 0.0068 21.1 5.9 21 324-344 2-22 (66)
46 PF07989 Microtub_assoc: Micro 22.6 1.8E+02 0.0038 23.4 4.5 50 289-341 23-72 (75)
47 PF09537 DUF2383: Domain of un 22.6 4.3E+02 0.0092 22.2 7.4 43 379-423 43-85 (111)
48 COG4985 ABC-type phosphate tra 22.5 3.7E+02 0.0081 26.4 7.4 108 261-389 139-247 (289)
49 PF13907 DUF4208: Domain of un 22.3 66 0.0014 27.2 2.2 42 218-259 21-62 (100)
50 PF09903 DUF2130: Uncharacteri 22.0 6.3E+02 0.014 25.4 9.4 64 356-428 156-219 (267)
51 PF08336 P4Ha_N: Prolyl 4-Hydr 21.3 5.7E+02 0.012 22.5 9.0 65 355-423 14-80 (134)
52 KOG2698|consensus 20.4 2.8E+02 0.006 26.8 6.0 49 377-425 62-114 (247)
No 1
>KOG1924|consensus
Probab=100.00 E-value=7.1e-102 Score=814.09 Aligned_cols=475 Identities=48% Similarity=0.798 Sum_probs=449.2
Q ss_pred CCCCCCCCCCCCCC-CCccccceecCCCCcccCccccccccccccCchhHHHHHHhccCCCCCCcC-Cccccccccchhh
Q psy15131 11 LPLGLKPKKKWDVG-GIKRANWKTINTQKLSEKSFWVKVKEEELASPDILTGLAQKFSSKPANKKA-DDNVDKCGTLKRY 88 (529)
Q Consensus 11 ~p~g~~pkk~~~p~-~lK~l~W~ki~~~~i~~~T~W~~~~e~~~~~~~~~~~lE~~F~~k~~~~~~-~~~~~~~g~l~~~ 88 (529)
+|+||+|||+|+|. +||++||.+|.+..+++++||..++|+++.++++|++|.-.|++++..++. .+.+++
T Consensus 610 lP~gLkpKK~~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk~en~dlfakL~~~Fatq~k~~k~~e~~eek------- 682 (1102)
T KOG1924|consen 610 LPFGLKPKKVYKPEVPMRRFNWSKIVPRDLSENCFWVKVNEDKLENDDLFAKLALKFATQPKVKKEQEGGEEK------- 682 (1102)
T ss_pred CCCCCCccccCCCCCccccCCccccCccccCccceeeecchhhccchHHHHHHHHHhhccccccccccccccc-------
Confidence 67889999999999 999999999999999999999999999999999999999999998776653 223332
Q ss_pred hhhhhhccccccCCccccccccccccceeecChhHHHHHHHHhhccCCCCCHHHHHHHHHccCCCCCCHHHHHHHHhcCC
Q psy15131 89 WTARQRRTSKKADDNVDKCGTLKRVKALKVLDSKAAQNLSILLGGSLKHYSYEEVKLSILRCDTNILSGNVLEQLISYLP 168 (529)
Q Consensus 89 ~~~~~r~~~~~~~~~~~~~~~~kk~~~isvLD~kraqNi~I~L~~~~k~~s~eei~~aI~~~D~~~L~~e~l~~L~~~lP 168 (529)
++..+||.+.+.|||+|.|||++|+|+ +|++ |+++|+.+|+.||+++|++.+|++|++++|
T Consensus 683 -----------------kt~~kKk~kel~ilDsKtaQnLsIflg-S~rm-pyeeik~~ILevne~vLse~~iqnLik~lP 743 (1102)
T KOG1924|consen 683 -----------------KTGTKKKVKELRILDSKTAQNLSIFLG-SFRM-PYEEIKNVILEVNEDVLSESMIQNLIKHLP 743 (1102)
T ss_pred -----------------cchhhhhhhhheecchHHHHHHHHHHh-hccC-CHHHHHHHHhhccHHHHHHHHHHHHHHhCC
Confidence 233467888999999999999999999 9998 999999999999999999999999999999
Q ss_pred CHHHHHHHHhhccCCCCCChhhHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Q psy15131 169 PPDQLQRLKELSGDYANLTEAEQFAVTIAEIKRLLPRLKSMHFKQHFQEMYTDCHKNIINGKQACEEVKQSKKLAKILEL 248 (529)
Q Consensus 169 t~eE~~~l~~~~~d~~~L~~aE~F~~~l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~ 248 (529)
.+|.+..|.+++..+++|.++|||...|++|++++.||.+++|+.+|.+.+++|+|.|.++..||++|++|++|..+|++
T Consensus 744 e~E~l~~L~e~Kaeye~l~e~EQF~vvm~~vkrL~pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeL 823 (1102)
T KOG1924|consen 744 EQEQLNKLSELKAEYEDLPEPEQFVVVMSQVKRLRPRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLEL 823 (1102)
T ss_pred CHHHHHHHHHHHHhccCCCCHHHHhHHHhhccccChhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCcceeeeccchhhhhcccCCCCCchHHHHHHHHHHhhCCcccccccchhhhhhhhccCHHHHHHHH
Q psy15131 249 ILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSI 328 (529)
Q Consensus 249 iL~iGNymN~gs~~g~A~GFkL~sL~KL~dtKs~d~k~TLLh~i~~~v~~~~pel~~f~~eL~~v~~Askvsl~~l~~~~ 328 (529)
||.+|||||+||++.+|+||.|++|+||.||||+|+++||||||+++++++||+++.|.+||+||..||+|+.+.|++.+
T Consensus 824 vLl~GNyMn~gSrNa~afgF~is~L~kL~dTKsaDqk~TLLHfLae~~e~kypd~l~F~ddl~hv~kaSrvnad~ikK~~ 903 (1102)
T KOG1924|consen 824 VLLVGNYMNSGSRNAQAFGFNISFLCKLRDTKSADQKTTLLHFLAEICEEKYPDILKFPDDLEHVEKASRVNADEIKKNL 903 (1102)
T ss_pred HHHHhcccccccccchhhccchHHHHhhccccccchhhHHHHHHHHHHHHhChhhhcchhhHHHHHhhccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccChhhhhHH
Q psy15131 329 RQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTD 408 (529)
Q Consensus 329 ~~l~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFgEd~~~~~~~eFF~~ 408 (529)
.+|+..+++++..++.+... ...+|+|.++|.+|.+.|..++..|..++.+|++.|++|.+||..|+++++.+|||..
T Consensus 904 ~~m~~~ik~Le~dlk~~~~~--~~e~dkF~ekM~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kkysmEEFFaD 981 (1102)
T KOG1924|consen 904 QQMENQIKKLERDLKNFKIA--GNEHDKFVEKMTSFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDPKKYSMEEFFAD 981 (1102)
T ss_pred HHHHHHHHHHHHHHHhcCCC--CcchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCcccCcHHHHHHH
Confidence 99999999999999998776 6688999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccChHHHHHHHHhcCCCcchhhh
Q psy15131 409 IKTFKDSFYQAWQENIKLREAEEKSIRVREAREKAENEKKDKAARKKALIDMTTDQTQQGVMDSLLEALQTGSAFTREQR 488 (529)
Q Consensus 409 ~~~F~~~f~~A~~en~~~~e~eek~rr~~~~~~k~~~~k~~~~~~k~~~~~~~~~~~~~~v~D~Ll~~Lr~g~~f~~~~~ 488 (529)
+.+|...|..|+.||.++|+++|+.||+++|+++++++++++++++++++++++.+++.||||+||++|+||.+|+.+|+
T Consensus 982 i~tFrnaf~ea~~en~krRee~Ek~rr~k~a~eqseqEr~erQqrk~alIdm~a~~de~GVmDslLeaLqsgaafr~rrk 1061 (1102)
T KOG1924|consen 982 IRTFRNAFLEAVAENEKRREEEEKERRAKLAKEQSEQERLERQQRKKALIDMNAEGDETGVMDSLLEALQSGAAFRTRRK 1061 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhccccccchhhhHHHHHHHHHhhccccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987766
Q ss_pred hccCCCCCCCcccccccccccccCccccc
Q psy15131 489 RKRQNDRPMGAERRAQLNRSRSRNGIVIT 517 (529)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (529)
|.+ +++.| ||+.+.|||||+.++.+
T Consensus 1062 ~~p--rq~~~--r~g~l~rsrsrh~~a~g 1086 (1102)
T KOG1924|consen 1062 RLP--RQTRG--RRGCLDRSRSRHQNALG 1086 (1102)
T ss_pred ccC--CCCcc--cccchhhhhHhhhhhhh
Confidence 543 33332 88899999999988755
No 2
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=100.00 E-value=5.6e-81 Score=665.06 Aligned_cols=429 Identities=38% Similarity=0.593 Sum_probs=372.3
Q ss_pred CCCCCCC-CCccccceecCCCCcccCccccccccccccCchhHHHHHHhccCCCCCCcCCccccccccchhhhhhhhhcc
Q psy15131 18 KKKWDVG-GIKRANWKTINTQKLSEKSFWVKVKEEELASPDILTGLAQKFSSKPANKKADDNVDKCGTLKRYWTARQRRT 96 (529)
Q Consensus 18 kk~~~p~-~lK~l~W~ki~~~~i~~~T~W~~~~e~~~~~~~~~~~lE~~F~~k~~~~~~~~~~~~~g~l~~~~~~~~r~~ 96 (529)
|+.++|+ +||+|||++|++.++ .+|||.++++.. ..++++||++|++++...........+
T Consensus 1 k~~~~P~~klK~l~W~ki~~~~~-~~tvW~~i~~~~---~~d~~~lE~lF~~k~~~~~~~~~~~~~-------------- 62 (432)
T smart00498 1 KKEPKPKKKLKPLHWDKLNPLDP-RGTVWDKIDENS---EGDLDELEELFAAKEKTKSASKDVSEK-------------- 62 (432)
T ss_pred CCCCCCCCCCcCcCceeCCCccc-cCChhhhcCccc---ccCHHHHHHHhCcCccccCcccccccc--------------
Confidence 4556777 899999999999887 589999999873 567899999999876554321111100
Q ss_pred ccccCCccccccccccccceeecChhHHHHHHHHhhccCCCCCHHHHHHHHHccCCCCCCHHHHHHHHhcCCCHHHHHHH
Q psy15131 97 SKKADDNVDKCGTLKRVKALKVLDSKAAQNLSILLGGSLKHYSYEEVKLSILRCDTNILSGNVLEQLISYLPPPDQLQRL 176 (529)
Q Consensus 97 ~~~~~~~~~~~~~~kk~~~isvLD~kraqNi~I~L~~~~k~~s~eei~~aI~~~D~~~L~~e~l~~L~~~lPt~eE~~~l 176 (529)
. ....+++++.++|||++|||||+|+|+ +|++ |+++|+.+|++||...|+.+.|+.|++++||+||+..|
T Consensus 63 ----~----~~~~~~~~~~v~ild~krs~ni~I~L~-~l~~-~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l 132 (432)
T smart00498 63 ----K----SILKKKVSQEFKILDPKRSQNLAILLR-KLHM-SYEEICEAILEGDEDVLSVDLLEQLLKYAPTKEELKKL 132 (432)
T ss_pred ----c----cccccccccceEeechhHHhhHHHHHH-hcCC-CHHHHHHHHHhcChhhCCHHHHHHHHhhCcCHHHHHHH
Confidence 0 011224567799999999999999999 9987 99999999999999999999999999999999999999
Q ss_pred HhhccC-CCCCChhhHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Q psy15131 177 KELSGD-YANLTEAEQFAVTIAEIKRLLPRLKSMHFKQHFQEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNY 255 (529)
Q Consensus 177 ~~~~~d-~~~L~~aE~F~~~l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~iGNy 255 (529)
++|.++ ++.|++||||++.|++||+|.+||+||+|+.+|++.+.+|.+.|..+..||++|++|+.|+.||++||++|||
T Consensus 133 ~~~~~~~~~~L~~~Eqfl~~l~~ip~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~ 212 (432)
T smart00498 133 REYKEEDPEELARAEQFLLLISNIPYLEERLNALLFKANFEEEVEDLKPQLEKVEAACEELRESKKFRKLLELILAIGNY 212 (432)
T ss_pred HHhcccchhhcchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCc
Confidence 999887 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCcceeeeccchhhhhcccCCCCCchHHHHHHHHHHhhCCcccccccchhhhhhhhccCHHHHHHHHHHHHHHH
Q psy15131 256 MNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNI 335 (529)
Q Consensus 256 mN~gs~~g~A~GFkL~sL~KL~dtKs~d~k~TLLh~i~~~v~~~~pel~~f~~eL~~v~~Askvsl~~l~~~~~~l~~~l 335 (529)
||+|+++|+|+||+|+||.||.|||++|+++||||||+++|++++|+++.|.+||++|..|++|+ ++|.+++++|.+++
T Consensus 213 mN~g~~rg~A~GFkL~sL~KL~d~Ks~d~k~tLLhylv~~i~~~~p~~~~f~~el~~v~~askvs-~~l~~~~~~l~~~~ 291 (432)
T smart00498 213 MNSGSRRGQAYGFKLSSLLKLSDVKSADNKTTLLHFLVKIIRKKYPDLLDFYSDLHHLDKAKVNL-EQLEKDVKQLERQI 291 (432)
T ss_pred ccCCCcCCCcceeeHHHHHHHHhhhccCCCccHHHHHHHHHHHhChhhccchhhhccHHHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHhccCCCCCCCchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccChhhhhHHHHHHHHH
Q psy15131 336 KNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDS 415 (529)
Q Consensus 336 ~~l~~~l~~~~~~~~~~~~D~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFgEd~~~~~~~eFF~~~~~F~~~ 415 (529)
..++.++.....+ .+.+|.|..+|.+|+..|..+++.|+..+..+...|.+++.||||++++.++++||++|.+|+..
T Consensus 292 ~~~e~~~~~l~~~--~~~~d~f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~ 369 (432)
T smart00498 292 KNLETDLGGLSDP--ENLDDKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKE 369 (432)
T ss_pred HHHHHHHHhcCCC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 9999887766555 24459999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhccCCCCCCccChHHHHHHHHh
Q psy15131 416 FYQAWQENIKLREAEEKSIRVREAREKAENEKK-DKAARKKALIDMTTDQTQQGVMDSLLEALQ 478 (529)
Q Consensus 416 f~~A~~en~~~~e~eek~rr~~~~~~k~~~~k~-~~~~~k~~~~~~~~~~~~~~v~D~Ll~~Lr 478 (529)
|.+|++||.+++++|++ ++....++..+.... .++....+..+.....+..|+||+++.+++
T Consensus 370 f~ka~~en~~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~~ 432 (432)
T smart00498 370 FSKAAEENIKKEEEEEE-RRKQLVKETTEYEQSSSRQKERNPSMDFEVERDFLGVLDSLLEELG 432 (432)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhhhccchhhhhhhhhhhhhHHHHHHhhC
Confidence 99999999988866553 333333333332211 111222334444556778899999998864
No 3
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=100.00 E-value=2.3e-73 Score=597.22 Aligned_cols=368 Identities=34% Similarity=0.598 Sum_probs=320.1
Q ss_pred CCCCCCC-CCccccceecCCCCcccCccccccccccccCchhHHHHHHhccCCCCCCcCCccccccccchhhhhhhhhcc
Q psy15131 18 KKKWDVG-GIKRANWKTINTQKLSEKSFWVKVKEEELASPDILTGLAQKFSSKPANKKADDNVDKCGTLKRYWTARQRRT 96 (529)
Q Consensus 18 kk~~~p~-~lK~l~W~ki~~~~i~~~T~W~~~~e~~~~~~~~~~~lE~~F~~k~~~~~~~~~~~~~g~l~~~~~~~~r~~ 96 (529)
||.++|+ +||+|||++|++.++ .+|||+++++.......++++||++|+.++........
T Consensus 2 k~~~~p~~k~k~l~W~~i~~~~~-~~tiW~~~~~~~~~~~~d~~~le~~F~~~~~~~~~~~~------------------ 62 (370)
T PF02181_consen 2 KKKPKPKKKLKPLHWDKIPNSKI-KGTIWSKIDEDEFNIDIDFEELEELFAKKEKEKKSKKK------------------ 62 (370)
T ss_dssp ------SS-B------EESSGGC-TTSCCCCTCCHHHHCTSHHHHHHHHTBSCECHHHH---------------------
T ss_pred CCCCCCCCCCcCCCceecCcccc-cCCccccCcccccchhhhHHHHHHHhcccccccccccc------------------
Confidence 5677888 999999999999887 58999999988766577899999999977654321100
Q ss_pred ccccCCccccccccccccceeecChhHHHHHHHHhhccCCCCCHHHHHHHHHccCCCCCCHHHHHHHHhcCCCHHHHHHH
Q psy15131 97 SKKADDNVDKCGTLKRVKALKVLDSKAAQNLSILLGGSLKHYSYEEVKLSILRCDTNILSGNVLEQLISYLPPPDQLQRL 176 (529)
Q Consensus 97 ~~~~~~~~~~~~~~kk~~~isvLD~kraqNi~I~L~~~~k~~s~eei~~aI~~~D~~~L~~e~l~~L~~~lPt~eE~~~l 176 (529)
.....++++.++|||++|+|||+|+|+ +|++ ++++|+++|.+||...|+.+.|+.|++++||+||++.+
T Consensus 63 ---------~~~~~~~~~~~~iLd~kr~~ni~I~L~-~~~~-~~~~l~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l 131 (370)
T PF02181_consen 63 ---------QASKKKKKKKISILDPKRSQNIGIVLK-KFKL-SPEELIQAILNLDEEVLTEELLENLLKILPTPEEIEAL 131 (370)
T ss_dssp ----------HCCCCTTCCESSS-HHHHHHHHHHHH-HHTS--HHHHHHHHHTTTTCCCTHHHHHHHHHHCGGHHHHHHH
T ss_pred ---------ccccccccccccccchHHHHHHHHHhh-ccCC-CHHHHHHHHHccCccccchHHHHHHHhcCCCchHHHHH
Confidence 112335667899999999999999999 9987 99999999999999999999999999999999999999
Q ss_pred HhhccCCCCCChhhHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHh
Q psy15131 177 KELSGDYANLTEAEQFAVTIAEIKRLLPRLKSMHFKQHFQEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYM 256 (529)
Q Consensus 177 ~~~~~d~~~L~~aE~F~~~l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~iGNym 256 (529)
++|.++.+.|++||+|++.|+.||+++.||+||+|+.+|++.+.++.+.|..+..||++|++|+.|+.+|.+||++||||
T Consensus 132 ~~~~~~~~~L~~~E~f~~~l~~ip~~~~rl~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~l 211 (370)
T PF02181_consen 132 KAYKGDPATLGPAEQFLLELSKIPRLKERLEALLFKSEFEEQLEELKEKLEKLEAACEELRESKSLRRLLEIILAIGNFL 211 (370)
T ss_dssp HCTCTSGTTB-HHHHHHHHHTTSTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcceeeeccchhhhhcccCCCCCchHHHHHHHHHHhhCCcccccccchhhhhhhhccCHHHHHHHHHHHHHHHH
Q psy15131 257 NSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIK 336 (529)
Q Consensus 257 N~gs~~g~A~GFkL~sL~KL~dtKs~d~k~TLLh~i~~~v~~~~pel~~f~~eL~~v~~Askvsl~~l~~~~~~l~~~l~ 336 (529)
|+|+++|+|+||+|++|.||.+|||+|+++||||||++++.+++|++..|.+||++|..|+++++++|.+++.+|++++.
T Consensus 212 N~g~~~g~A~GF~L~sL~kL~~~Ks~d~~~tLL~~l~~~~~~~~~~~~~~~~eL~~v~~a~~~~~~~l~~~i~~l~~~~~ 291 (370)
T PF02181_consen 212 NGGTPRGNAKGFKLSSLSKLKDTKSNDNKTTLLHYLVKIVEEKFPDLLDLEDELSSVEKASKVSLDELEQDIKELEKGLE 291 (370)
T ss_dssp STCSTTCS-SEE-GGGGGGCCCSB-STTTSBHHHHHHHHHHTTSGGGGGHHHHTTTHHHCCTS-HHHHHHHHHHHHHHHH
T ss_pred ccCCCccccceecHHhHHHHHhcccccCCchHHHHHHHHHHhcChHHhccHHHHhhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccChhhhhHHHHHHHHHH
Q psy15131 337 NLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSF 416 (529)
Q Consensus 337 ~l~~~l~~~~~~~~~~~~D~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFgEd~~~~~~~eFF~~~~~F~~~f 416 (529)
.++.+++..... .+.+|.|...|.+|++.+..++..|+..+.++.+.|.+++.|||||++.+++++||++|.+|+..|
T Consensus 292 ~~~~~l~~~~~~--~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~~ff~~l~~F~~~f 369 (370)
T PF02181_consen 292 KIKKELEAIEKD--EEDDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFGEDPKKMSPEEFFKILSQFIDMF 369 (370)
T ss_dssp HHHHHHHHCCTT--SSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccc--ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHh
Confidence 999999876542 467889999999999999999999999999999999999999999999999999999999999998
Q ss_pred H
Q psy15131 417 Y 417 (529)
Q Consensus 417 ~ 417 (529)
+
T Consensus 370 k 370 (370)
T PF02181_consen 370 K 370 (370)
T ss_dssp H
T ss_pred C
Confidence 6
No 4
>KOG1923|consensus
Probab=100.00 E-value=5.4e-53 Score=447.81 Aligned_cols=375 Identities=25% Similarity=0.372 Sum_probs=334.1
Q ss_pred CCCCCCC-CCccccceecCCCCcccCccccccccccccCchhHHHHHHhccC-CCCCCcCCccccccccchhhhhhhhhc
Q psy15131 18 KKKWDVG-GIKRANWKTINTQKLSEKSFWVKVKEEELASPDILTGLAQKFSS-KPANKKADDNVDKCGTLKRYWTARQRR 95 (529)
Q Consensus 18 kk~~~p~-~lK~l~W~ki~~~~i~~~T~W~~~~e~~~~~~~~~~~lE~~F~~-k~~~~~~~~~~~~~g~l~~~~~~~~r~ 95 (529)
|+.+..+ +|-.+||..+.+.++. +|+++.++++.+....+|+++|+.|.. +.....-... .++
T Consensus 362 k~~~~tk~~~p~lnW~alKP~qv~-~tvf~~~~De~Il~~lD~~~~ee~Fk~~~s~~~~~~e~-------------~a~- 426 (830)
T KOG1923|consen 362 KKPTPTKTKSPSLNWLALKPIQVK-GTVFHELNDEKILEALDFSRFEEQFKILKSNGQILDES-------------SAV- 426 (830)
T ss_pred cCCCcccccCCCccccccCccccc-cchhhhhhHHHHHHhhhHHHHHHHHHhhhcccchhhhH-------------HHH-
Confidence 4444555 8889999999999985 699999999888877889999999985 3222211000 000
Q ss_pred cccccCCccccccccccccceeecChhHHHHHHHHhhccCCCCCHHHHHHHHHccCCCCCCHHHHHHHHhcCCCHHHHHH
Q psy15131 96 TSKKADDNVDKCGTLKRVKALKVLDSKAAQNLSILLGGSLKHYSYEEVKLSILRCDTNILSGNVLEQLISYLPPPDQLQR 175 (529)
Q Consensus 96 ~~~~~~~~~~~~~~~kk~~~isvLD~kraqNi~I~L~~~~k~~s~eei~~aI~~~D~~~L~~e~l~~L~~~lPt~eE~~~ 175 (529)
.....|...+++++|.+|++|++|.++ ..+ +.++|..||..+|-..|+.+.++.|.+++||.+|...
T Consensus 427 ----------~~~~~ka~qk~tLle~~R~~nlaiT~R--~~~-~~~~V~~Aih~~dLk~L~~~~ve~L~r~lPTe~E~kl 493 (830)
T KOG1923|consen 427 ----------SKAMTKAPQKRTLLEQRRLFNLAITRR--VQM-KAKEVMAAIHPLDLKALSLEPVELLQRILPTEAEVKL 493 (830)
T ss_pred ----------HHHhhhhhhhhhHHHHHHHHHHHHHhh--hcC-chHHHHHHhhhccccccCCcHHHHHHhcCCchHHHHH
Confidence 011224467799999999999999887 345 8999999999999999999999999999999999999
Q ss_pred HHhhcc---CCCCCChhhHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Q psy15131 176 LKELSG---DYANLTEAEQFAVTIAEIKRLLPRLKSMHFKQHFQEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLM 252 (529)
Q Consensus 176 l~~~~~---d~~~L~~aE~F~~~l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~i 252 (529)
+++|.. +...|+..|+|++.++.|+|+++|+..|-|+.+|.+.+.-+.+++..+..|+..+++|.+|+.||++||++
T Consensus 494 ~~~~~~e~~pme~Ls~edkFml~lskIErle~klatM~~m~nF~dsv~ll~pq~~si~aAS~s~k~sr~lr~VleiILA~ 573 (830)
T KOG1923|consen 494 LREYERERSPMENLSEEDKFMLSLSKIERLEEKLATMEFMGNFPDSVQLLAPQLISIIAASKSLKESRKLRPVLEIILAF 573 (830)
T ss_pred HHHhhhhcCchhhcccchhhhhhhhhhhhhHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 999864 45689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCcceeeeccchhhhhcccCCCCCchHHHHHHHHHHhhCCcccccccchhhhhhhhccCHHHHHHHHHHHH
Q psy15131 253 GNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQME 332 (529)
Q Consensus 253 GNymN~gs~~g~A~GFkL~sL~KL~dtKs~d~k~TLLh~i~~~v~~~~pel~~f~~eL~~v~~Askvsl~~l~~~~~~l~ 332 (529)
|||||.+. ||.++||+|.+|.-|.+|||+|.++||||||+-.+++++|.+..|.+||.-++.|+.|+++.+..|+.+|.
T Consensus 574 gNymns~k-Rg~ayGFklqslD~ll~tkStDr~~tLlh~iv~~i~eklp~l~~F~~el~~~eKa~av~lesV~~Dv~eL~ 652 (830)
T KOG1923|consen 574 GNYMNSSK-RGAAYGFKLQSLDSLLDTKSTDRSMTLLHYIVLTIAEKLPALQLFFSELDFVEKATAVQLESVLADVKELN 652 (830)
T ss_pred hccCCCcc-cccccceeccccHHHhhccCCccceeeeehhhHHHHHhhHHHHhhHHHhhccchhhhhhhhccchhHHHHH
Confidence 99999875 59999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccChhhhhHHHHHH
Q psy15131 333 NNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTF 412 (529)
Q Consensus 333 ~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFgEd~~~~~~~eFF~~~~~F 412 (529)
++....+++.+.. ..| ..|..|+.....+++.|++.++.+.+.|+.++.||||.|+..+|..||..|+.|
T Consensus 653 ~g~~l~~kE~e~~-------~~~---~iL~~F~~n~~~kmkkl~~~~k~A~~af~~~~~y~Gespk~tppt~ff~~f~~F 722 (830)
T KOG1923|consen 653 AGMTLAEKETERE-------GLD---VILSEFLDNNKPKMKKLRKDFKDAAEAFEDVVEYFGESPKTTPPTVFFQLFVRF 722 (830)
T ss_pred hHHHHHHHHHhhh-------ccc---hHHHHHHhcccHHHHHHHHHHHHHHHHHHhHhHhhCCCCCCCCCCccHHHHHHH
Confidence 9999999877532 223 679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy15131 413 KDSFYQAWQENIKLREAEE 431 (529)
Q Consensus 413 ~~~f~~A~~en~~~~e~ee 431 (529)
+..|+.+..||..+.+.|.
T Consensus 723 ~~~~k~~~~ene~k~~le~ 741 (830)
T KOG1923|consen 723 VRAYKMARQENEQKKKLEA 741 (830)
T ss_pred HHHHHhhhhhhhhhhhHHH
Confidence 9999999999988776544
No 5
>KOG1925|consensus
Probab=100.00 E-value=3.4e-48 Score=392.80 Aligned_cols=357 Identities=20% Similarity=0.350 Sum_probs=306.3
Q ss_pred CCccccceecCCCC---c----ccCccccccccccccCchhHHHHHHhccCCCCCCcCCccccccccchhhhhhhhhccc
Q psy15131 25 GIKRANWKTINTQK---L----SEKSFWVKVKEEELASPDILTGLAQKFSSKPANKKADDNVDKCGTLKRYWTARQRRTS 97 (529)
Q Consensus 25 ~lK~l~W~ki~~~~---i----~~~T~W~~~~e~~~~~~~~~~~lE~~F~~k~~~~~~~~~~~~~g~l~~~~~~~~r~~~ 97 (529)
+.-+|||..+.-.+ | ..+|||..+|...+ +-..||.+|..+.....+ +.
T Consensus 283 ~~~KL~Wr~~~~~~~~Gv~~~r~~~t~W~s~D~~~~----D~~r~~~LFEsr~~~~~P---~K----------------- 338 (817)
T KOG1925|consen 283 KTVKLFWRDVKLAGGHGVSASRPCATLWASLDPVSV----DTARLEHLFESRAKEVLP---SK----------------- 338 (817)
T ss_pred ceeEEEeecceecCCCCCccccccchhhhccCccee----cHHHHHHHHHHhhhhhcc---ch-----------------
Confidence 46679999765322 1 13699999987643 346899999864332211 00
Q ss_pred cccCCccccccccccccceeecChhHHHHHHHHhhccCCCCCHHHHHHHHHccCCCCCCHHHHHHHHhcCCCHHHHHHHH
Q psy15131 98 KKADDNVDKCGTLKRVKALKVLDSKAAQNLSILLGGSLKHYSYEEVKLSILRCDTNILSGNVLEQLISYLPPPDQLQRLK 177 (529)
Q Consensus 98 ~~~~~~~~~~~~~kk~~~isvLD~kraqNi~I~L~~~~k~~s~eei~~aI~~~D~~~L~~e~l~~L~~~lPt~eE~~~l~ 177 (529)
+...-+....+|||.||+|.|+|-|. .+. |..-|..||+++|+-+++.|.|+.|++++||++|++.++
T Consensus 339 ---------K~~E~r~~~~tVL~~KRt~AINIGLT-~LP--Pv~VI~AA~~~FD~~~~~KDGIEK~L~MmPt~eE~qkIe 406 (817)
T KOG1925|consen 339 ---------KAGEGRRTMTTVLDPKRTNAINIGLT-TLP--PVHVIKAALLNFDEFAVSKDGIEKLLTMMPTEEERQKIE 406 (817)
T ss_pred ---------hhcccceeeeeecCcccccceeeccc-cCC--chhhhHHHHhcchhhhcchhhHHHHHHhCCCHHHHHHHH
Confidence 00112345689999999999999999 664 678899999999999999999999999999999999987
Q ss_pred hh--ccCCCCCChhhHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Q psy15131 178 EL--SGDYANLTEAEQFAVTIAEIKRLLPRLKSMHFKQHFQEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNY 255 (529)
Q Consensus 178 ~~--~~d~~~L~~aE~F~~~l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~iGNy 255 (529)
.. .+.--.|+.||||++.|++|+.+.+||+.|.|+..|+..-.+|-+.|-.+..|++++-+|..|+-+|.++|+||||
T Consensus 407 ~aqlaNPEipLG~AEQfLLtLSsI~~L~aRL~LWaFklDY~~~EKeiAEPL~Dlk~gm~qlE~n~Tf~~il~tLLAIGNf 486 (817)
T KOG1925|consen 407 GAQLANPEIPLGPAEQFLLTLSSIGGLAARLQLWAFKLDYDSMEKEIAEPLFDLKVGMEQLEQNATFRCILATLLAIGNF 486 (817)
T ss_pred HHHhcCCCCCCCcHHHHHHHHhhhHHHHHHHHHHhhhcccchhhHHhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHhcc
Confidence 64 2344689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCcceeeeccchhhhhcccCCCCCchHHHHHHHHHHhhCCcccccccchhhhhhhhccCHHHHHHHHHHHHHHH
Q psy15131 256 MNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNI 335 (529)
Q Consensus 256 mN~gs~~g~A~GFkL~sL~KL~dtKs~d~k~TLLh~i~~~v~~~~pel~~f~~eL~~v~~Askvsl~~l~~~~~~l~~~l 335 (529)
+|+. ++.||.|+.|.|..++|++..++||||+|+.++.++|||-.+++.|+..|...++|++++|..++.+|++.+
T Consensus 487 LnGT----~~KgFeLsYLeKvsEVKDtV~KqsLlhHlc~~vVE~FpessDLYSEiGA~tRSAkVDf~qL~DNL~qlErrC 562 (817)
T KOG1925|consen 487 LNGT----QSKGFELSYLEKVSEVKDTVRKQSLLHHLCSLVVETFPESSDLYSEIGALTRSAKVDFEQLTDNLGQLERRC 562 (817)
T ss_pred ccCc----cccceehHhhhhchhhcchHHHHHHHHHHHHHHHHhCCcchhHHHHhHhhhhhhhccHHHHHHHHHHHHHHh
Confidence 9975 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc---cChhhhhHHHHHH
Q psy15131 336 KNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNI---YTLEEFFTDIKTF 412 (529)
Q Consensus 336 ~~l~~~l~~~~~~~~~~~~D~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFgEd~~~---~~~~eFF~~~~~F 412 (529)
+.-+..|...... .-.-.+...|..|+.++..++..|+..+..+.+.|.+.+-|||..+.. ..+++||.++.+|
T Consensus 563 KaSWe~L~~Iakh---e~~p~l~~r~~~fl~~cA~RI~~LKivhrr~~NRfHSFLLy~Gy~p~aIrev~iN~fc~~~~EF 639 (817)
T KOG1925|consen 563 KASWESLRSIAKH---ELAPALRARLTHFLDQCARRIAMLKIVHRRVCNRFHSFLLYLGYTPQAIREVRINQFCHTLREF 639 (817)
T ss_pred hHHHHHHHHHHhh---hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhcCHHHHHHHHHHH
Confidence 9888877653211 112246788999999999999999999999999999999999998764 5799999999999
Q ss_pred HHHHHHHHHHHH
Q psy15131 413 KDSFYQAWQENI 424 (529)
Q Consensus 413 ~~~f~~A~~en~ 424 (529)
..+|+.....+.
T Consensus 640 aLEYRTTRervL 651 (817)
T KOG1925|consen 640 ALEYRTTRERVL 651 (817)
T ss_pred HHHhhhHHHHHH
Confidence 999998765443
No 6
>KOG1922|consensus
Probab=100.00 E-value=8.2e-43 Score=400.39 Aligned_cols=381 Identities=28% Similarity=0.429 Sum_probs=324.7
Q ss_pred CC-CCccccceecCCCCcccCccccccccccccCch-hHHHHHHhccCCCCCCcCCccccccccchhhhhhhhhcccccc
Q psy15131 23 VG-GIKRANWKTINTQKLSEKSFWVKVKEEELASPD-ILTGLAQKFSSKPANKKADDNVDKCGTLKRYWTARQRRTSKKA 100 (529)
Q Consensus 23 p~-~lK~l~W~ki~~~~i~~~T~W~~~~e~~~~~~~-~~~~lE~~F~~k~~~~~~~~~~~~~g~l~~~~~~~~r~~~~~~ 100 (529)
|. +||++||+++..... ...+|..++...+.... ..+.+|.+|+.-....... ..+.
T Consensus 392 p~~~lk~l~wdk~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~e~lf~~~~~~~~~~-~~~~------------------- 450 (833)
T KOG1922|consen 392 PKNKLKPLHWDKTRGSSK-RSMVWSEVDSSSSLFDPPLSELMEALFGLVKFLPSDN-GGDT------------------- 450 (833)
T ss_pred CCCCCCCccccccCCCCc-cCCCCCccccCCcCCCCCcccccccchhhhhcccCCC-CCCC-------------------
Confidence 45 899999999998765 58999999886554321 1256788886321111000 0000
Q ss_pred CCccccccccccccceeecChhHHHHHHHHhhccCCCCCHHHHHHHHHccCCCCCCHHHHHHHHhcCCCHHHHHHHHhhc
Q psy15131 101 DDNVDKCGTLKRVKALKVLDSKAAQNLSILLGGSLKHYSYEEVKLSILRCDTNILSGNVLEQLISYLPPPDQLQRLKELS 180 (529)
Q Consensus 101 ~~~~~~~~~~kk~~~isvLD~kraqNi~I~L~~~~k~~s~eei~~aI~~~D~~~L~~e~l~~L~~~lPt~eE~~~l~~~~ 180 (529)
+.... ..-..+.++++|++++||++|+|. .+.+ +.+++..+|+.+|+..+..++|+.|.++.|+++|...+..|.
T Consensus 451 --~~~~~-~~~~~~~~~v~~~r~~~n~~ill~-sl~~-~~~~~~~a~~~~~~~~~~~~~l~~l~~~~pt~~E~~~l~~~~ 525 (833)
T KOG1922|consen 451 --GREEK-TAVEKKRLKVLDPRRPQNIAILLS-SLNM-PTEDIPQALLELDDSVLGLDQLEKLLKFAPTKEEETKLKEES 525 (833)
T ss_pred --ccccc-cccccccccccCCCCccceeeehh-hcCC-chHHHHHHHhccCccccCHHHHHHHHccCCChhHHHHHHhhc
Confidence 00000 001115688999999999999999 9987 999999999999999999999999999999999999999999
Q ss_pred cCCCCCChhhHHHHH-HhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhcCC
Q psy15131 181 GDYANLTEAEQFAVT-IAEIKRLLPRLKSMHFKQHFQEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSG 259 (529)
Q Consensus 181 ~d~~~L~~aE~F~~~-l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~iGNymN~g 259 (529)
++...|+.+|+|+.+ +..||.+..|+++++|+..|...+..+.+.+..+..||.+++++..|.+++++||..|||||.|
T Consensus 526 ~~~~~l~~~e~~~~~~~~~ip~~~~~~~~~~f~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~~~~~~e~il~~Gn~mN~g 605 (833)
T KOG1922|consen 526 GDPLTLGDAEKFFFEELSGIPEFEERLQALSFRSKFSEEVTALKKKLETVEVASKELLESKKFLKILEIILAAGNRMNAG 605 (833)
T ss_pred CCCCccchHHHHHHHHhhcchHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhccccccc
Confidence 988999999999987 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeeccchhhhhcccCCCCCchHHH-HHHHHHHhhC---------------CcccccccchhhhhhhhccCHHH
Q psy15131 260 SRNGGAFGFEINFLTKLSSTKDIENKTTLLH-YLVDTIEQKF---------------PECLKFGDELLHVDRAARVSTDV 323 (529)
Q Consensus 260 s~~g~A~GFkL~sL~KL~dtKs~d~k~TLLh-~i~~~v~~~~---------------pel~~f~~eL~~v~~Askvsl~~ 323 (529)
+.+|+|+||+|++|.+|.|+|+.++++++|| |+.++++... |.+.+|.+||..|..|++++++.
T Consensus 606 ~~rg~a~~f~l~~l~kl~d~ks~~~~~~~l~~~~~e~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~v~~aa~i~~~~ 685 (833)
T KOG1922|consen 606 TNRGSAHGFKLDALLKLSDVKSSDGKTTLLHFVVPEVVRSEGKRSVIDVEKSRRLGLPSLLKFLSDLSNVESAAKIDLEV 685 (833)
T ss_pred ccccccchhhHHHHhhhhhhhcccccchhhhhhHHHHHHhhccccchhhhhhhhccchhhhcccchhcccchhhccCHHH
Confidence 9999999999999999999999998865555 4555555444 47789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hccCCCCCCCchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-CccC
Q psy15131 324 IQNSIRQMENNIKNLETDIQ-NCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDK-NIYT 401 (529)
Q Consensus 324 l~~~~~~l~~~l~~l~~~l~-~~~~~~~~~~~D~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFgEd~-~~~~ 401 (529)
+.+++.+|.+++..+.+.+. ...... .++.|.|..+|..|+..|..++..+...+..+...+..++.|||+++ ...+
T Consensus 686 l~~~~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~f~~~~~~fl~~ae~ev~~l~~~~~~~~~~~~~~~~yf~~~~~~~~~ 764 (833)
T KOG1922|consen 686 LAEECSDLKKGLEKVKRELPTASKNES-LPPGDPFSKVKKEFLSSAEKEVKLLISEEREVRESVKKTAKYFGEDPKEEIT 764 (833)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCC-CCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCC
Confidence 99999999999999999995 433221 55789999999999999999999999999999999999999999999 5778
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15131 402 LEEFFTDIKTFKDSFYQAWQENIKLREAE 430 (529)
Q Consensus 402 ~~eFF~~~~~F~~~f~~A~~en~~~~e~e 430 (529)
+.+||.++..|+..|+++++|+.+.++++
T Consensus 765 ~~~~f~~~r~fl~~~~~~~~e~~~~~~k~ 793 (833)
T KOG1922|consen 765 PEQVFSILRDFLRTFDKAHEENKKAEEKE 793 (833)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998776544
No 7
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=96.71 E-value=0.001 Score=34.98 Aligned_cols=15 Identities=100% Similarity=1.234 Sum_probs=12.9
Q ss_pred ChHHHHHHHHhcCCC
Q psy15131 468 GVMDSLLEALQTGSA 482 (529)
Q Consensus 468 ~v~D~Ll~~Lr~g~~ 482 (529)
||||+||++|++|.+
T Consensus 1 gvmdsllealqtg~a 15 (15)
T PF06345_consen 1 GVMDSLLEALQTGSA 15 (15)
T ss_dssp -HHHHHHHHHHHSTT
T ss_pred CcHHHHHHHHHccCC
Confidence 699999999999974
No 8
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=90.28 E-value=3.4 Score=44.55 Aligned_cols=109 Identities=14% Similarity=0.160 Sum_probs=81.8
Q ss_pred hhhhhccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCch---hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15131 313 VDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANEND---KFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDL 389 (529)
Q Consensus 313 v~~Askvsl~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~D---~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l 389 (529)
...++...++.|...+..+...+..+..-+. ..+....+++ .|...+..|...+...+...+..-........+.
T Consensus 318 F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfg--e~~~~~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~~~~~~~~ 395 (432)
T smart00498 318 FLKAAKEKYDKLQKDLSDLKTRFEKLVEYYG--EDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRKQLVKET 395 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788888999888888888887766442 2221122332 4667777888888888888888888888889999
Q ss_pred HhhcccCCC--ccChhhhhHHHHHHHHHHHHHHHHH
Q psy15131 390 AEFYTFDKN--IYTLEEFFTDIKTFKDSFYQAWQEN 423 (529)
Q Consensus 390 ~~yFgEd~~--~~~~~eFF~~~~~F~~~f~~A~~en 423 (529)
..||...+. ...+..+|.+..+|...++..+++.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~ 431 (432)
T smart00498 396 TEYEQSSSRQKERNPSMDFEVERDFLGVLDSLLEEL 431 (432)
T ss_pred HhhhhhhhhhhhccchhhhhhhhhhhhhHHHHHHhh
Confidence 999997653 3467788999999999999988753
No 9
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=73.60 E-value=41 Score=29.58 Aligned_cols=50 Identities=16% Similarity=0.346 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccChhhhhHHHHHHHHHHH
Q psy15131 366 KEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFY 417 (529)
Q Consensus 366 ~~a~~~~~~L~~~~~~~~~~~~~l~~yFgEd~~~~~~~eFF~~~~~F~~~f~ 417 (529)
.....++..|+..+..+...|..++..|||-.- ..++.=..+.+.-..|+
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E--~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQTLLELLGEKSE--EVEELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH--HHHHHHHHHHHHHHHHH
Confidence 445567788899999999999999999998532 23444444555444444
No 10
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=67.33 E-value=78 Score=31.86 Aligned_cols=103 Identities=18% Similarity=0.287 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCC-CcceeeeccchhhhhcccCC--------CCCchHHHHHHHHHHhh--CCccccccc
Q psy15131 240 KKLAKILELILLMGNYMNSGSRN-GGAFGFEINFLTKLSSTKDI--------ENKTTLLHYLVDTIEQK--FPECLKFGD 308 (529)
Q Consensus 240 ~~l~~lL~~iL~iGNymN~gs~~-g~A~GFkL~sL~KL~dtKs~--------d~k~TLLh~i~~~v~~~--~pel~~f~~ 308 (529)
-..+.+|.+.-.+=+.|+..... ....+|+++.=.|+.|+|.. +.+.+|.+.|-+.+.-+ -...+.-.-
T Consensus 79 yAVkELLKia~lLy~A~~~~~~~e~~~~~~~~~l~~k~~dlk~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~~ 158 (267)
T PF10234_consen 79 YAVKELLKIASLLYSAMKSAPSDEEDDSLFKFDLSSKIQDLKAARQLASEITQRGASLYDLLGKEVELREERQRALARPL 158 (267)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccccchhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCc
Confidence 34466777777777777766321 12356666666778888863 45567777776665421 122234456
Q ss_pred chhhhhhhhccCHHHHHHHHHHHHHHHHHHHHHH
Q psy15131 309 ELLHVDRAARVSTDVIQNSIRQMENNIKNLETDI 342 (529)
Q Consensus 309 eL~~v~~Askvsl~~l~~~~~~l~~~l~~l~~~l 342 (529)
|+..++.+-+-.+..+..++.++++.+.++..+-
T Consensus 159 e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de 192 (267)
T PF10234_consen 159 ELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDE 192 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777766666777777777776666665543
No 11
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=66.60 E-value=4 Score=47.84 Aligned_cols=16 Identities=31% Similarity=0.652 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCCCCC
Q psy15131 5 VKPPDVLPLGLKPKKK 20 (529)
Q Consensus 5 ~~~pp~~p~g~~pkk~ 20 (529)
-|||||+|+|.-|.-.
T Consensus 8 ~ppppppppg~epps~ 23 (2365)
T COG5178 8 NPPPPPPPPGFEPPSQ 23 (2365)
T ss_pred CCcccccCCCCCCCCC
Confidence 3556666667655443
No 12
>KOG0994|consensus
Probab=62.37 E-value=3e+02 Score=33.42 Aligned_cols=22 Identities=9% Similarity=0.228 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHhcCCCC
Q psy15131 240 KKLAKILELILLMGNYMNSGSR 261 (529)
Q Consensus 240 ~~l~~lL~~iL~iGNymN~gs~ 261 (529)
..-+.+=.+|-.|+||++..+.
T Consensus 1468 ~s~~el~~Li~~v~~Flt~~~a 1489 (1758)
T KOG0994|consen 1468 ESNRELRNLIQQVRDFLTQPDA 1489 (1758)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC
Confidence 4456666789999999997653
No 13
>KOG2675|consensus
Probab=58.96 E-value=5 Score=42.43 Aligned_cols=17 Identities=35% Similarity=0.688 Sum_probs=13.3
Q ss_pred ccCCCCCChhhHHHHHH
Q psy15131 180 SGDYANLTEAEQFAVTI 196 (529)
Q Consensus 180 ~~d~~~L~~aE~F~~~l 196 (529)
.||+.+..-+|||....
T Consensus 451 dgDy~EfpvPEQfkt~~ 467 (480)
T KOG2675|consen 451 DGDYVEFPVPEQFKTKF 467 (480)
T ss_pred CCCcccccChHHHhhhc
Confidence 36888999999997644
No 14
>KOG1924|consensus
Probab=53.56 E-value=1.5e+02 Score=34.18 Aligned_cols=57 Identities=14% Similarity=0.328 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhCCc----ccccccch--hhhhhhhcc--CHHHHHH----HHHHHHHHHHHHHHHHHhc
Q psy15131 289 LHYLVDTIEQKFPE----CLKFGDEL--LHVDRAARV--STDVIQN----SIRQMENNIKNLETDIQNC 345 (529)
Q Consensus 289 Lh~i~~~v~~~~pe----l~~f~~eL--~~v~~Askv--sl~~l~~----~~~~l~~~l~~l~~~l~~~ 345 (529)
+.||++....+.-| ++.|.-|+ .....+.+. ++..+.+ ....+++.+..++..+...
T Consensus 845 is~L~kL~dTKsaDqk~TLLHfLae~~e~kypd~l~F~ddl~hv~kaSrvnad~ikK~~~~m~~~ik~L 913 (1102)
T KOG1924|consen 845 ISFLCKLRDTKSADQKTTLLHFLAEICEEKYPDILKFPDDLEHVEKASRVNADEIKKNLQQMENQIKKL 913 (1102)
T ss_pred hHHHHhhccccccchhhHHHHHHHHHHHHhChhhhcchhhHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 56677766655433 34444333 111222332 3344332 2345666666666666554
No 15
>KOG1962|consensus
Probab=52.58 E-value=2.3e+02 Score=27.58 Aligned_cols=69 Identities=16% Similarity=0.094 Sum_probs=38.6
Q ss_pred hhHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhcC
Q psy15131 189 AEQFAVTIAEIKRLLPRLKSMHFKQHFQEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNS 258 (529)
Q Consensus 189 aE~F~~~l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~iGNymN~ 258 (529)
+|-++..+.-+|- ..|..-++|+..+.......-...-.+.-+|--+.-=.+.+++-.+.=..|+--|.
T Consensus 11 ~Eial~~iL~Lpi-p~r~~~~~~~~~~~~~~~~~~~~~i~~~~~villlfiDsvr~i~~~~~~~~~~~n~ 79 (216)
T KOG1962|consen 11 AEIALFLILLLPI-PPRRRRKIFKDRLKSGLAPQVLKTIATTMIVILLLFIDSVRRIQKYVSEYGSMANP 79 (216)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCC
Confidence 5666666777776 77777777776666555444333333444444444444555555444444554443
No 16
>PRK10132 hypothetical protein; Provisional
Probab=51.83 E-value=86 Score=27.07 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=32.7
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q psy15131 355 DKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDK 397 (529)
Q Consensus 355 D~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFgEd~ 397 (529)
+.....+...+..++..+...+.....+......+-.|-.++|
T Consensus 44 ~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~P 86 (108)
T PRK10132 44 EAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERP 86 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCc
Confidence 4577888888888888888777765566677777777877776
No 17
>PRK15244 virulence protein SpvB; Provisional
Probab=50.43 E-value=7 Score=43.01 Aligned_cols=12 Identities=25% Similarity=0.670 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCC
Q psy15131 2 GPLVKPPDVLPL 13 (529)
Q Consensus 2 ~~~~~~pp~~p~ 13 (529)
-||.|||||+|.
T Consensus 363 ~~~~~~~~~~~~ 374 (591)
T PRK15244 363 NNMMPPPPPPPM 374 (591)
T ss_pred CCCCCCcccCcc
Confidence 366776666665
No 18
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=48.59 E-value=2e+02 Score=25.79 Aligned_cols=47 Identities=17% Similarity=0.131 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCccChhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy15131 373 TLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIKLRE 428 (529)
Q Consensus 373 ~~L~~~~~~~~~~~~~l~~yFgEd~~~~~~~eFF~~~~~F~~~f~~A~~en~~~~e 428 (529)
..|+.....+++.-..++.=|-+.. ..+.+|+..|....+.--.|+.
T Consensus 99 ~~L~~~~~e~eeeSe~lae~fl~g~---------~d~~~Fl~~f~~~R~~yH~R~~ 145 (150)
T PF07200_consen 99 ARLQAAASEAEEESEELAEEFLDGE---------IDVDDFLKQFKEKRKLYHLRRA 145 (150)
T ss_dssp HHHHHHHHHHHHHHHHHC-S-SSSH---------HHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666666666665431 2477888999887776655543
No 19
>KOG4673|consensus
Probab=48.15 E-value=1.5e+02 Score=33.60 Aligned_cols=51 Identities=16% Similarity=0.272 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCccChhhhhHHHHHHHHHHHHHHHH
Q psy15131 370 QKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQE 422 (529)
Q Consensus 370 ~~~~~L~~~~~~~~~~~~~l~~yFgEd~~~~~~~eFF~~~~~F~~~f~~A~~e 422 (529)
..+..++..+..+...|..++..|||.. --.+++=-.+.+.-.+|+.-+.+
T Consensus 904 ~~~p~~~~~ledL~qRy~a~LqmyGEk~--Ee~EELrlDl~dlK~mYk~QIde 954 (961)
T KOG4673|consen 904 DRVPGIKAELEDLRQRYAAALQMYGEKD--EELEELRLDLVDLKEMYKEQIDE 954 (961)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhcchH--HHHHHHHhhHHHHHHHHHHHHHH
Confidence 3455677788888899999999999854 23466666666666666654443
No 20
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=44.35 E-value=4.3e+02 Score=28.32 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=23.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15131 402 LEEFFTDIKTFKDSFYQAWQENIKLREAEEKS 433 (529)
Q Consensus 402 ~~eFF~~~~~F~~~f~~A~~en~~~~e~eek~ 433 (529)
.+++......|...|.....|..+|+.-+++.
T Consensus 334 l~~L~~~Y~~F~~aY~~LL~Ev~RRr~~~~k~ 365 (412)
T PF04108_consen 334 LEQLCEFYEGFLSAYDSLLLEVERRRAVRDKM 365 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555678889999999998888765543
No 21
>KOG4302|consensus
Probab=44.20 E-value=2.4e+02 Score=32.21 Aligned_cols=103 Identities=13% Similarity=0.080 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCC--CCCchh---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy15131 321 TDVIQNSIRQMENNIKNLETDIQNCKQAPV--ANENDK---FLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTF 395 (529)
Q Consensus 321 l~~l~~~~~~l~~~l~~l~~~l~~~~~~~~--~~~~D~---f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFgE 395 (529)
-..|.+++...+..+..+-..|........ ..++.. ....+.+.++....+.+.=...+..+......+|.=.|+
T Consensus 63 ~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g 142 (660)
T KOG4302|consen 63 KARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGG 142 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345556666666666666555543211100 001111 223333444444444444344455555555555655555
Q ss_pred CCC-ccChhhhhHHHH-HHHHHHHHHHHHH
Q psy15131 396 DKN-IYTLEEFFTDIK-TFKDSFYQAWQEN 423 (529)
Q Consensus 396 d~~-~~~~~eFF~~~~-~F~~~f~~A~~en 423 (529)
... ......++..+. .++..|..-..+.
T Consensus 143 ~~~~~~~~~~D~~dlsl~kLeelr~~L~~L 172 (660)
T KOG4302|consen 143 PEDLPSFLIADESDLSLEKLEELREHLNEL 172 (660)
T ss_pred CccCCcccccCcccccHHHHHHHHHHHHHH
Confidence 411 012233444444 6666666555444
No 22
>PRK11637 AmiB activator; Provisional
Probab=42.42 E-value=4.6e+02 Score=28.09 Aligned_cols=29 Identities=14% Similarity=0.105 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15131 363 PFAKEVRQKITLLSNMSKNMMTLYGDLAE 391 (529)
Q Consensus 363 ~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~ 391 (529)
.=+.....++..++..+......+...+.
T Consensus 103 ~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 103 KQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555554544444
No 23
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=41.19 E-value=4.9e+02 Score=28.04 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccCC---------CCCCCchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15131 320 STDVIQNSIRQMENNIKNLETDIQNCKQA---------PVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYG 387 (529)
Q Consensus 320 sl~~l~~~~~~l~~~l~~l~~~l~~~~~~---------~~~~~~D~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~ 387 (529)
.++.+.+++....++|+.++.-+..-+.. .....+..|......++.+.+..+..+.+.|..++.+..
T Consensus 251 qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~DL~dDL~ka~eTf~lVeq~~~ 327 (426)
T smart00806 251 QLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIADLKEDLEKAEETFDLVEQCCE 327 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888888887777666432100 001123345555555666555555555555555444433
No 24
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=40.85 E-value=2.3e+02 Score=24.24 Aligned_cols=72 Identities=8% Similarity=0.195 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCchhHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcccCC
Q psy15131 322 DVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLL-SNMSKNMMTLYGDLAEFYTFDK 397 (529)
Q Consensus 322 ~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~Fl~~a~~~~~~L-~~~~~~~~~~~~~l~~yFgEd~ 397 (529)
++|..|++.|-..+..+ |...... ....-+........-+.+++.++... ..............=.|-+++|
T Consensus 11 ~~l~~el~~L~d~lEev---L~ssg~~-a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~P 83 (104)
T COG4575 11 DQLLAELQELLDTLEEV---LKSSGSL-AGDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENP 83 (104)
T ss_pred HHHHHHHHHHHHHHHHH---HHhcccc-hhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCC
Confidence 67777777776665544 3322111 12334557788888888888888888 4445566666666667888877
No 25
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=40.43 E-value=2.2e+02 Score=23.92 Aligned_cols=64 Identities=11% Similarity=0.200 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15131 322 DVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYG 387 (529)
Q Consensus 322 ~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~ 387 (529)
+.|..+|..+...+..|+........+ ...++.....|..-...+......+...++.+.....
T Consensus 11 ~~I~~~I~~i~~~v~~l~~l~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~ 74 (117)
T smart00503 11 EEIRANIQKISQNVAELQKLHEELLTP--PDADKELREKLERLIDDIKRLAKEIRAKLKELEKENL 74 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 455666666666666666544443322 1222345566666666776666667666666655443
No 26
>KOG3080|consensus
Probab=40.42 E-value=3.3e+02 Score=27.82 Aligned_cols=43 Identities=12% Similarity=0.161 Sum_probs=25.3
Q ss_pred CCchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy15131 352 NENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTF 395 (529)
Q Consensus 352 ~~~D~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFgE 395 (529)
++.|.|..-| .||.+|..-+...-..+.++.-.|..=..||.|
T Consensus 132 ~~eDDf~REl-aFYkQa~~aVl~A~~rL~elgV~~~RP~DYfAE 174 (328)
T KOG3080|consen 132 NPEDDFAREL-AFYKQALSAVLEAFPRLHELGVPFLRPTDYFAE 174 (328)
T ss_pred CchhHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCccCchHHHHH
Confidence 4557766555 588887766555555555554445555555554
No 27
>PRK11637 AmiB activator; Provisional
Probab=40.18 E-value=5e+02 Score=27.84 Aligned_cols=25 Identities=4% Similarity=0.064 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15131 361 MEPFAKEVRQKITLLSNMSKNMMTL 385 (529)
Q Consensus 361 m~~Fl~~a~~~~~~L~~~~~~~~~~ 385 (529)
+..=+..++.++...++.+......
T Consensus 108 l~~eI~~~q~~l~~~~~~l~~rlra 132 (428)
T PRK11637 108 LNASIAKLEQQQAAQERLLAAQLDA 132 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666665555444333
No 28
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=40.06 E-value=1.5e+02 Score=27.26 Aligned_cols=65 Identities=11% Similarity=0.191 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCchhHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15131 322 DVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLE--IMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEF 392 (529)
Q Consensus 322 ~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~D~f~~--~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~y 392 (529)
.....+..+|+.++..+.+++...+ ..|.|.. ++..-++.+..+++.+.+........+.....+
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS------~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~ 102 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAIS------AQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSK 102 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-------TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888999999999887643 3455543 344555555566666655555555555554443
No 29
>KOG2072|consensus
Probab=37.89 E-value=5.8e+02 Score=29.91 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy15131 367 EVRQKITLLSNMSKNMMTLYGDLAEFYT 394 (529)
Q Consensus 367 ~a~~~~~~L~~~~~~~~~~~~~l~~yFg 394 (529)
.-+..+......++......+.+..+|+
T Consensus 726 ~Ek~Ri~~~~ae~e~~vk~k~~l~rm~~ 753 (988)
T KOG2072|consen 726 REKQRIEAAIAERESAVKDKKRLSRMYD 753 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555555566666666666666655
No 30
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=36.90 E-value=2.7e+02 Score=23.78 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=47.5
Q ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15131 316 AARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAE 391 (529)
Q Consensus 316 Askvsl~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~ 391 (529)
|.+-+++.+.+.+....+.+..++..++.... .|. ...+.--+.+...++..+...+..+.....-|++
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt------~~d-v~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHLPT------RDD-VHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------HHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888889999999998876421 122 3446666777777777777777776665554443
No 31
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=36.55 E-value=1.9e+02 Score=21.93 Aligned_cols=24 Identities=13% Similarity=0.490 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy15131 321 TDVIQNSIRQMENNIKNLETDIQN 344 (529)
Q Consensus 321 l~~l~~~~~~l~~~l~~l~~~l~~ 344 (529)
++.|..+|..|...+..|..++..
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~ 28 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNA 28 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888888776654
No 32
>PRK10404 hypothetical protein; Provisional
Probab=35.05 E-value=2.8e+02 Score=23.54 Aligned_cols=72 Identities=7% Similarity=0.066 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCchhHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcccCC
Q psy15131 322 DVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKN-MMTLYGDLAEFYTFDK 397 (529)
Q Consensus 322 ~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~Fl~~a~~~~~~L~~~~~~-~~~~~~~l~~yFgEd~ 397 (529)
+.|..|++.|...+..+-++.... . ...-+.+.......+..++.++..+.+.+.. .......+-.|-.++|
T Consensus 8 ~~l~~dl~~L~~dle~Ll~~~~~~--a--~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~P 80 (101)
T PRK10404 8 TRIDDDLTLLSETLEEVLRSSGDP--A--DQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKP 80 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhh--h--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCc
Confidence 566777777777766654432211 0 1223457777888888888877776665433 5555666666777766
No 33
>PHA00728 hypothetical protein
Probab=33.61 E-value=89 Score=27.29 Aligned_cols=25 Identities=12% Similarity=0.349 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15131 320 STDVIQNSIRQMENNIKNLETDIQN 344 (529)
Q Consensus 320 sl~~l~~~~~~l~~~l~~l~~~l~~ 344 (529)
.+++|..+-.+|++.+..++.-+.+
T Consensus 6 eveql~keneelkkkla~leal~nn 30 (151)
T PHA00728 6 EVEQLKKENEELKKKLAELEALMNN 30 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcC
Confidence 5678888888999988888876654
No 34
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=33.49 E-value=4.4e+02 Score=25.33 Aligned_cols=25 Identities=8% Similarity=0.223 Sum_probs=17.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHH
Q psy15131 319 VSTDVIQNSIRQMENNIKNLETDIQ 343 (529)
Q Consensus 319 vsl~~l~~~~~~l~~~l~~l~~~l~ 343 (529)
..++.++.++.+|+..|.++-+...
T Consensus 2 ~~i~~~E~~~~~le~~l~kl~K~~k 26 (200)
T cd07639 2 AAIEEVEAEVSELETRLEKLVKLGS 26 (200)
T ss_pred chHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3567777888888887777766543
No 35
>PF08359 TetR_C_4: YsiA-like protein, C-terminal region; InterPro: IPR013570 The members of this family are thought to be TetR-type (tetracycline resistance) transcriptional regulators that bear particular similarity to YsiA (P94548 from SWISSPROT). This entry represents the C-terminal domain.; PDB: 1VI0_B.
Probab=32.76 E-value=1.3e+02 Score=25.97 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=12.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q psy15131 403 EEFFTDIKTFKDSFYQAWQENIK 425 (529)
Q Consensus 403 ~eFF~~~~~F~~~f~~A~~en~~ 425 (529)
.++...+......|.+...++++
T Consensus 56 ~~~~~~~~~~~~~~~~~i~~iI~ 78 (133)
T PF08359_consen 56 EELRKKINEIRREYLRIIEEIIE 78 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566655666665555443
No 36
>KOG4603|consensus
Probab=29.72 E-value=4.1e+02 Score=24.95 Aligned_cols=89 Identities=11% Similarity=0.236 Sum_probs=53.8
Q ss_pred ccchhhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15131 307 GDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAP-VANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTL 385 (529)
Q Consensus 307 ~~eL~~v~~Askvsl~~l~~~~~~l~~~l~~l~~~l~~~~~~~-~~~~~D~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~ 385 (529)
..||..+. +.+++++++.++++|++.++..+.-|.+.+... ...|.|+ ..+....+.-..++......
T Consensus 106 eaEik~L~--s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk---------~~v~~~y~~~~~~wrk~krm 174 (201)
T KOG4603|consen 106 EAEIKELS--SALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDK---------EQVYREYQKYCKEWRKRKRM 174 (201)
T ss_pred HHHHHHHH--HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 34455444 347888899999999888888877776654321 1234443 33444445555666666777
Q ss_pred HHHHHhhcccCCCccChhhhhH
Q psy15131 386 YGDLAEFYTFDKNIYTLEEFFT 407 (529)
Q Consensus 386 ~~~l~~yFgEd~~~~~~~eFF~ 407 (529)
|.+++.-+-|+.. ....++|.
T Consensus 175 f~ei~d~~~e~~p-k~ksel~e 195 (201)
T KOG4603|consen 175 FREIIDKLLEGLP-KKKSELYE 195 (201)
T ss_pred HHHHHHHHHcCCc-chHHHHHH
Confidence 8888877776642 22344443
No 37
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=28.40 E-value=3e+02 Score=22.68 Aligned_cols=71 Identities=7% Similarity=0.157 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCchhHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcccCC
Q psy15131 323 VIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMS-KNMMTLYGDLAEFYTFDK 397 (529)
Q Consensus 323 ~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~Fl~~a~~~~~~L~~~~-~~~~~~~~~l~~yFgEd~ 397 (529)
+|.+++.+|..++..+-..+.... ...-+.....+...+..+...+....... ..+......+-.|--+.|
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~~~~----~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P 73 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAADLA----GEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENP 73 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCh
Confidence 456667777777666655443211 11223455566666666666665444332 233344444444544444
No 38
>KOG0243|consensus
Probab=28.36 E-value=1.1e+03 Score=28.42 Aligned_cols=135 Identities=18% Similarity=0.296 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcCCCCCCcceeeeccchhhhhcccCCCCCchHHHHHHHHHHhhCCcccccccchhhhhhhhc--------
Q psy15131 247 ELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAAR-------- 318 (529)
Q Consensus 247 ~~iL~iGNymN~gs~~g~A~GFkL~sL~KL~dtKs~d~k~TLLh~i~~~v~~~~pel~~f~~eL~~v~~Ask-------- 318 (529)
+-+|.+|-.+|+=.-+++-.=|+=|=|++|..===.+...|.+ |..--|....+.+-|+.++-|.|
T Consensus 321 qSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~i------IATiSPa~~~lEETlSTLEYA~RAKnIkNKP 394 (1041)
T KOG0243|consen 321 QSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCI------IATISPAKHNLEETLSTLEYAHRAKNIKNKP 394 (1041)
T ss_pred HHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEE------EEEeCCCcccHHHHHHHHHHHHHhhhccCCC
Confidence 3445555555543333444555555555553210011111221 22334666666666666666643
Q ss_pred -cCHHHH-HHHHHHHHHHHHHHHHHHHhccC-CCCCCCchhH------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15131 319 -VSTDVI-QNSIRQMENNIKNLETDIQNCKQ-APVANENDKF------LEIMEPFAKEVRQKITLLSNMSKNMMTLYG 387 (529)
Q Consensus 319 -vsl~~l-~~~~~~l~~~l~~l~~~l~~~~~-~~~~~~~D~f------~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~ 387 (529)
++-.-. ..-++++..+|..|+.+|.+... -.+--+.+.| ...+..-+++-..+++.++..+....+.|.
T Consensus 395 evNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 395 EVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 110000 11235556666666666644321 1123355666 334444455555555555555555555443
No 39
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=24.71 E-value=5.5e+02 Score=23.55 Aligned_cols=57 Identities=14% Similarity=0.300 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15131 321 TDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAE 391 (529)
Q Consensus 321 l~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~ 391 (529)
+.+|..++.++...++.++.+|...... + -..+....+..|+.....+......+..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~----~----------t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSE----P----------TNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC----C----------CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677777777777777787777665432 1 1123445556666666666666666654
No 40
>PF03800 Nuf2: Nuf2 family; InterPro: IPR005549 Members of this family are components of the mitotic spindle. It has been shown that Nuf2 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle. An arabidopsis protein has been included in this family that has previously not been identified as a member of this family, Q9C953 from SWISSPROT. The match is not strong, but in common with other members of this family contains coiled-coil to the C terminus of this region.; GO: 0007067 mitosis, 0000775 chromosome, centromeric region; PDB: 2VE7_D 3IZ0_D.
Probab=24.40 E-value=1.1e+02 Score=27.64 Aligned_cols=37 Identities=24% Similarity=0.461 Sum_probs=20.6
Q ss_pred cCCCCCHHHHHHHHHccCCCCCCHHHHHHHHhcCCCHHHHHHH
Q psy15131 134 SLKHYSYEEVKLSILRCDTNILSGNVLEQLISYLPPPDQLQRL 176 (529)
Q Consensus 134 ~~k~~s~eei~~aI~~~D~~~L~~e~l~~L~~~lPt~eE~~~l 176 (529)
.|..++++||+..+..|+-. ++.+.|.. |+++-+..+
T Consensus 8 ~FP~L~~~eIv~~L~~~~~~-~t~~dl~k-----Pt~e~v~~l 44 (146)
T PF03800_consen 8 SFPLLSPDEIVNCLQECGIP-VTEEDLKK-----PTPEFVQKL 44 (146)
T ss_dssp ---S--HHHHHHHHHHHT---HHHHC--G-------HHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCC-cCHHHHcC-----CCHHHHHHH
Confidence 36667999999999999866 66666655 888876543
No 41
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=24.25 E-value=4.9e+02 Score=29.12 Aligned_cols=88 Identities=16% Similarity=0.155 Sum_probs=48.3
Q ss_pred hhCCcccccccchhhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCchhHHhhHHHHHHHHHHHHHHHHH
Q psy15131 298 QKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSN 377 (529)
Q Consensus 298 ~~~pel~~f~~eL~~v~~Askvsl~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~Fl~~a~~~~~~L~~ 377 (529)
.++|++.....|.. ..+.+..+-...+.+..+...|..++.++..... -+..+..--..-+..+..|.+
T Consensus 75 ~~~~~ie~~L~~ae--~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~---------~l~~L~~~e~~nr~~i~~l~~ 143 (560)
T PF06160_consen 75 KQLPEIEEQLFEAE--EYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILD---------ELDELLESEEKNREEIEELKE 143 (560)
T ss_pred HhhHHHHHHHHHHH--HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 45565543332222 1234556666666666666666665555543211 012233333445567777888
Q ss_pred HHHHHHHHHHHHHhhcccC
Q psy15131 378 MSKNMMTLYGDLAEFYTFD 396 (529)
Q Consensus 378 ~~~~~~~~~~~l~~yFgEd 396 (529)
.|..+.+.+-.-..-||..
T Consensus 144 ~y~~lrk~ll~~~~~~G~a 162 (560)
T PF06160_consen 144 KYRELRKELLAHSFSYGPA 162 (560)
T ss_pred HHHHHHHHHHHhhhhhchh
Confidence 8888888777777777754
No 42
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=23.69 E-value=4.2e+02 Score=21.80 Aligned_cols=57 Identities=16% Similarity=0.316 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15131 326 NSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEF 392 (529)
Q Consensus 326 ~~~~~l~~~l~~l~~~l~~~~~~~~~~~~D~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~y 392 (529)
..|..+...+..+++.+.....+ .....+.+.+..-...+...+ ..+......+..+
T Consensus 3 ~~l~~in~~v~~l~k~~~~lGt~---~Ds~~lR~~i~~~~~~~~~l~-------k~~~~~l~~l~~~ 59 (102)
T PF14523_consen 3 SNLFKINQNVSQLEKLVNQLGTP---RDSQELREKIHQLIQKTNQLI-------KEISELLKKLNSL 59 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-SS---S--HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHhCCc---cccHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 34555555666666655443221 222345555554444444433 3444444555444
No 43
>PF07431 DUF1512: Protein of unknown function (DUF1512); InterPro: IPR009995 This family consists of several archaeal proteins of around 370 residues in length. The function of this family is unknown.
Probab=23.11 E-value=4.5e+02 Score=27.58 Aligned_cols=68 Identities=16% Similarity=0.320 Sum_probs=45.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcccCCCccChhhhhHHHHHHHHHHHHHHHHHHH
Q psy15131 358 LEIMEPFAKEVRQKITLLSNM--SKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIK 425 (529)
Q Consensus 358 ~~~m~~Fl~~a~~~~~~L~~~--~~~~~~~~~~l~~yFgEd~~~~~~~eFF~~~~~F~~~f~~A~~en~~ 425 (529)
...+..|.+++...+..+-.. .++.+..++++..||-=+|.++.|...-..+...+..++...++..+
T Consensus 35 l~~L~~~~~~a~~~~~~~l~~~~~~~~e~~i~r~~dffvI~Pv~ldP~gIv~k~~hll~t~e~~~~~~v~ 104 (355)
T PF07431_consen 35 LSELEQYRNEARKKVIEYLKKNGSEDPESLIDRLLDFFVIEPVDLDPTGIVRKLKHLLRTYEDRFEKEVK 104 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHhheecCcCCCCchhhHHHHHHHHHhhHHHHHHHHH
Confidence 334444555555444333221 23457778899999999999888988888888888888777665544
No 44
>COG4046 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.81 E-value=3.5e+02 Score=27.91 Aligned_cols=61 Identities=8% Similarity=0.120 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcccCCCccChhhhhHHHHHHHHHHHHHHHHHH
Q psy15131 364 FAKEVRQKITLLSNMS-KNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENI 424 (529)
Q Consensus 364 Fl~~a~~~~~~L~~~~-~~~~~~~~~l~~yFgEd~~~~~~~eFF~~~~~F~~~f~~A~~en~ 424 (529)
+..+|..++..+...- ...+...++.+.||-=+|.+..|..+-.-+...+..+..-.++..
T Consensus 55 ~~~~a~~~~~~~~~~~~~e~es~l~r~~effVI~Pv~idP~gIi~R~~~Ll~~~~dr~~~~v 116 (368)
T COG4046 55 MENDAMKKVVELAVPRRDEAESTLERYAEFFVIPPVDIDPAGIIDRLRHLLEMGEDRFRKLV 116 (368)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHhheecCcccCCccchHHHHHHHHHhhhHHHHHHH
Confidence 3333444443333322 445556666677777777777776666666666666555544443
No 45
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=22.61 E-value=3.1e+02 Score=21.05 Aligned_cols=21 Identities=24% Similarity=0.634 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy15131 324 IQNSIRQMENNIKNLETDIQN 344 (529)
Q Consensus 324 l~~~~~~l~~~l~~l~~~l~~ 344 (529)
+.+++..|.+.+..++.++..
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~ 22 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIER 22 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666555555543
No 46
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=22.57 E-value=1.8e+02 Score=23.38 Aligned_cols=50 Identities=18% Similarity=0.354 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhCCcccccccchhhhhhhhccCHHHHHHHHHHHHHHHHHHHHH
Q psy15131 289 LHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETD 341 (529)
Q Consensus 289 Lh~i~~~v~~~~pel~~f~~eL~~v~~Askvsl~~l~~~~~~l~~~l~~l~~~ 341 (529)
+||+.+.+....|+- ..++..--.=-++.+..+..++..+.+.|..+++.
T Consensus 23 I~fLee~l~~~~~~~---~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 23 IYFLEERLQKLGPES---IEELLKENIELKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred HHHHHHHHHhccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888887655542 12211111012444555555555555555554443
No 47
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=22.56 E-value=4.3e+02 Score=22.17 Aligned_cols=43 Identities=5% Similarity=-0.154 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhcccCCCccChhhhhHHHHHHHHHHHHHHHHH
Q psy15131 379 SKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQEN 423 (529)
Q Consensus 379 ~~~~~~~~~~l~~yFgEd~~~~~~~eFF~~~~~F~~~f~~A~~en 423 (529)
...........+.-+|.+|.. ...+-+.+......++.+...+
T Consensus 43 ~~~~~~~L~~~i~~~Gg~p~~--~gs~~g~~~r~~~~ik~~~~~~ 85 (111)
T PF09537_consen 43 RQQHAEELQAEIQELGGEPEE--SGSFKGALHRAWMDIKSALGGD 85 (111)
T ss_dssp HHHHHHHHHHHHHHTT--H------HHCHHHH-TTTHHHHS----
T ss_pred HHHHHHHHHHHHHHcCCCcCc--ccCHHHHHHHHHHHHHHHhcCC
Confidence 334444455556667877753 2466666666666666655444
No 48
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=22.49 E-value=3.7e+02 Score=26.44 Aligned_cols=108 Identities=12% Similarity=0.195 Sum_probs=54.3
Q ss_pred CCCcceeeeccchhhhhcccCCCCCchHH-HHHHHHHHhhCCcccccccchhhhhhhhccCHHHHHHHHHHHHHHHHHHH
Q psy15131 261 RNGGAFGFEINFLTKLSSTKDIENKTTLL-HYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLE 339 (529)
Q Consensus 261 ~~g~A~GFkL~sL~KL~dtKs~d~k~TLL-h~i~~~v~~~~pel~~f~~eL~~v~~Askvsl~~l~~~~~~l~~~l~~l~ 339 (529)
+.|++||.-+ .++++. .-|- +-++..+.+..|++.++.+.+..+. ..++.-+..++..++
T Consensus 139 ~~G~~yG~ll-------~~~~ng--q~l~Gd~l~~eLqkr~~~v~~l~~q~~k~~----------~~qv~~in~qlErLR 199 (289)
T COG4985 139 RGGQLYGKLL-------RFDSNG--QELDGDPLERELQKRLLEVETLRDQVDKMV----------EQQVRVINSQLERLR 199 (289)
T ss_pred cCcchhhhee-------eeccCC--CcccCcHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 4578898744 445542 2222 4466666666665544443333222 234444444444443
Q ss_pred HHHHhccCCCCCCCchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15131 340 TDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDL 389 (529)
Q Consensus 340 ~~l~~~~~~~~~~~~D~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l 389 (529)
-+-...... ..-+|.|...+..-..+.+.++..|++.+..+...++.-
T Consensus 200 L~krrlQl~--g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~~e~~r~ 247 (289)
T COG4985 200 LEKRRLQLN--GQLDDEFQQHYVAEKSELQKRLAQLQTELDALRAELERQ 247 (289)
T ss_pred HHHHHHhhc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 221111111 233566666666556666666666666666665555543
No 49
>PF13907 DUF4208: Domain of unknown function (DUF4208)
Probab=22.31 E-value=66 Score=27.19 Aligned_cols=42 Identities=12% Similarity=0.253 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhcCC
Q psy15131 218 MYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSG 259 (529)
Q Consensus 218 ~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~iGNymN~g 259 (529)
.+.-++..|..|...-+.+-.......+=..++.||||++.-
T Consensus 21 ~m~Pvkk~LkkL~~~~~~l~~~e~a~~lk~~L~~IG~~I~~~ 62 (100)
T PF13907_consen 21 LMRPVKKSLKKLKKPKKGLPRKERAKILKKELLKIGDFIDSI 62 (100)
T ss_pred HhHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444444577788888999999999854
No 50
>PF09903 DUF2130: Uncharacterized protein conserved in bacteria (DUF2130); InterPro: IPR019219 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=22.02 E-value=6.3e+02 Score=25.43 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=41.8
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccChhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy15131 356 KFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIKLRE 428 (529)
Q Consensus 356 ~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFgEd~~~~~~~eFF~~~~~F~~~f~~A~~en~~~~e 428 (529)
.|...|..++..+..+...+........+....+-.| ++ +|=..+..|+..|..+..++.+..+
T Consensus 156 ~~fi~l~~~LR~~~i~~~~~k~~~~~~~~k~~~l~~f--e~-------~~~~~~~~~~~~~~~~~~~l~ke~~ 219 (267)
T PF09903_consen 156 QFFIPLITLLRNAAIKSAKYKKEQENKKEKMEDLYNF--EE-------EFRQFIEAIVENFEDMSKDLDKEIK 219 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666677788888888888888888777777777777 21 2333345566666666666554433
No 51
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=21.26 E-value=5.7e+02 Score=22.48 Aligned_cols=65 Identities=12% Similarity=0.198 Sum_probs=48.3
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcc--ChhhhhHHHHHHHHHHHHHHHHH
Q psy15131 355 DKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIY--TLEEFFTDIKTFKDSFYQAWQEN 423 (529)
Q Consensus 355 D~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFgEd~~~~--~~~eFF~~~~~F~~~f~~A~~en 423 (529)
+.+...+..|+..-+.+++.|+.....+......... |+..+ .|=.-|..+..|...|.+...-.
T Consensus 14 ~~l~~~L~~Yi~~~~~kl~~l~~~~~~~~~~~~~~~~----d~e~yl~nPlnaF~LIrRl~~dW~~~~~~~ 80 (134)
T PF08336_consen 14 EELISNLRNYIEELQEKLDTLKRFLDEMKREHEKAKS----DPEEYLSNPLNAFSLIRRLHQDWPKWEKLM 80 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----chhhhhhcHHHHHHHHHHHHHhhhhHHHHH
Confidence 3467778889999999999998888888877766543 33222 46677999999999998765433
No 52
>KOG2698|consensus
Probab=20.44 E-value=2.8e+02 Score=26.81 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHhhcccCCCc----cChhhhhHHHHHHHHHHHHHHHHHHH
Q psy15131 377 NMSKNMMTLYGDLAEFYTFDKNI----YTLEEFFTDIKTFKDSFYQAWQENIK 425 (529)
Q Consensus 377 ~~~~~~~~~~~~l~~yFgEd~~~----~~~~eFF~~~~~F~~~f~~A~~en~~ 425 (529)
+...+|-.+|..++.-.||||.- -+|+.+-+-+--|..-|+.-..|...
T Consensus 62 ~~lp~m~~a~~siL~~LGEdp~RqgLl~TP~R~aKaMl~Ftkgy~~~l~dvlN 114 (247)
T KOG2698|consen 62 EVLPEMANAYSSILKSLGEDPNRQGLLKTPERAAKAMLYFTKGYEQNLNDVLN 114 (247)
T ss_pred hHhHHHHHHHHHHHHHhcCCcchhhhhcCHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 44567888999999999999974 27899999999999999888776543
Done!