RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15131
(529 letters)
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 389 bits (1001), Expect = e-131
Identities = 195/480 (40%), Positives = 286/480 (59%), Gaps = 29/480 (6%)
Query: 16 KPKKKWDVGGIKRANWKTINTQKLSEKSFWVKVKEEELASPDILTGLAQKFSSKPANKKA 75
KP+ + ++R NW + LS+ FW KVKE+ + ++ L FS++ KA
Sbjct: 5 KPEVQ-----LRRPNWSKFVAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKA 59
Query: 76 DDNVDKCGTLKRYWTARQRRTSKKADDNVDKCGTLKRVKALKVLDSKAAQNLSILLGGSL 135
+ K K+VK LKVLDSK AQNLSI LG S
Sbjct: 60 --------------------KKDQEGGEEKKSVQKKKVKELKVLDSKTAQNLSIFLG-SF 98
Query: 136 KHYSYEEVKLSILRCDTNILSGNVLEQLISYLPPPDQLQRLKELSGDYANLTEAEQFAVT 195
+ Y+E+K IL + +L+ ++++ LI +P P+QL+ L EL +Y +L E+EQF V
Sbjct: 99 R-MPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQFGVV 157
Query: 196 IAEIKRLLPRLKSMHFKQHFQEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNY 255
+ + RL PRL ++ FK F E + I++ ACEE+++S+ + +LEL LL+GNY
Sbjct: 158 MGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNY 217
Query: 256 MNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDR 315
MN+GSRN GAFGF I+FL KL TK + K TLLH+L + E PE LKF DEL HV++
Sbjct: 218 MNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEK 277
Query: 316 AARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLL 375
A+RVS + +Q S+ QM+ I ++E D+QN A +E DKF+E M F K+ +++ L
Sbjct: 278 ASRVSAENLQKSLDQMKKQIADVERDVQNFPAAT--DEKDKFVEKMTSFVKDAQEQYNKL 335
Query: 376 SNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIR 435
M NM TLY +L +++ FD ++EEFF D+ F++ F QA +EN K RE EEK R
Sbjct: 336 RMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRR 395
Query: 436 VREAREKAENEKKDKAARKKALIDMTTDQTQQGVMDSLLEALQTGSAFTREQRRKRQNDR 495
+ A+EKAE E+ +K +++ LIDM + + GVMDSLLEALQ+G+AF R++ ++ N +
Sbjct: 396 AKLAKEKAEKERLEKQQKREQLIDMNAEGDETGVMDSLLEALQSGAAFRRKRGPRQVNRK 455
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 370 bits (952), Expect = e-124
Identities = 132/505 (26%), Positives = 239/505 (47%), Gaps = 27/505 (5%)
Query: 13 LGLKPKKKWDVGG-IKRANWKTINTQKLSEKSFWVKVKEEELASPDILTGLAQKFSSKPA 71
L LK K +K NW + KL E + W ++ + ++ L L + FS+
Sbjct: 1 LALKKKSIPQPTNALKSFNWSKLPENKL-EGTVWTEIDDTKVFKILDLEDLERTFSAYQR 59
Query: 72 NKKADDNVDKCGTLKRYWTARQRRTSKKADDNVDKCGTLKRVKALKVLDSKAAQNLSILL 131
+ N + K+AD D + +VK L V+D + AQN +ILL
Sbjct: 60 QQDFFVNSNS--------------KQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILL 105
Query: 132 GGSLKHYSYEEVKLSILRCDTN-ILSGNVLEQLISYLPPPDQLQRLKELSGDYANLTEAE 190
S +E+K +IL D L ++LEQL+ ++P + L+E + + +A+
Sbjct: 106 SR--LKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKAD 163
Query: 191 QFAVTIAEIKRLLPRLKSMHFKQHFQEMYTDCHKNIINGKQACEEVKQSKKLAKILELIL 250
+F ++ I RL+S++FK+ F E + + + EEV +S L ++LE++L
Sbjct: 164 RFLFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVL 223
Query: 251 LMGNYMNSGSRNGGAFGFEINFLTKLSSTKD-IENKTTLLHYLVDTIEQKFPECLKFGDE 309
GNYMN G R G A+GF+I+ L K++ TK I+ TLLHYL+ +E K+P L +E
Sbjct: 224 AFGNYMNKGQR-GNAYGFKISSLNKIADTKSSIDKNITLLHYLITIVENKYPSVLNLNEE 282
Query: 310 LLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVR 369
L + +AA+V+ + I + + +K +ET+++ K P DKF+ ++ F
Sbjct: 283 LRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQP-PQPGDKFVSVVSQFITVAS 341
Query: 370 QKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREA 429
+ + ++ L+ + + + +EFF F + +A QEN +R+
Sbjct: 342 FSFSDVEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGIFDQFLQAVSEAKQENENMRKK 401
Query: 430 EEKSIRVREAREKAENEKKDKAARKKALIDMTTDQTQQGVMDSLLEALQTGSAFTREQRR 489
+E+ E R + E + K++ R++ + + + G D L+ AL++G F ++ +
Sbjct: 402 KEE----EERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSALRSGEVFDKDLSK 457
Query: 490 KRQNDRPMGAERRAQLNRSRSRNGI 514
++N R + +R R +
Sbjct: 458 LKRN-RKRITNQMTDSSRERPITKL 481
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 328 bits (843), Expect = e-109
Identities = 155/343 (45%), Positives = 222/343 (64%), Gaps = 4/343 (1%)
Query: 108 GTLKRVKALKVLDSKAAQNLSILLGGSLKHYSYEEVKLSILRCDTNILSGNVLEQLISYL 167
G+ K+VK LKVLDSK AQNLSI LG S + Y+E+K IL + +L+ ++++ LI +
Sbjct: 1 GSKKKVKELKVLDSKTAQNLSIFLG-SFR-MPYQEIKNVILEVNEAVLTESMIQNLIKQM 58
Query: 168 PPPDQLQRLKELSGDYANLTEAEQFAVTIAEIKRLLPRLKSMHFKQHFQEMYTDCHKNII 227
P P+QL+ L EL +Y +L E+EQF V + + RL PRL ++ FK F E + I+
Sbjct: 59 PEPEQLKMLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIV 118
Query: 228 NGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTT 287
+ ACEE+++S+ + +LEL LL+GNYMN+GSRN GAFGF I+FL KL TK + K T
Sbjct: 119 SVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMT 178
Query: 288 LLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQ 347
LLH+L + E PE LKF DEL HV++A+RVS + +Q S+ QM+ I ++E D+Q
Sbjct: 179 LLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQ--NF 236
Query: 348 APVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTLEEFFT 407
+E DKF+E M F K+ +++ L M NM TLY +L +++ FD ++EEFF
Sbjct: 237 PAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFM 296
Query: 408 DIKTFKDSFYQAWQENIKLREAEEKSIRVREAREKAENEKKDK 450
D+ F++ F QA +EN K RE EEK R + A+EKAE E+ +K
Sbjct: 297 DLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEK 339
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A
{Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B*
1ux4_A
Length = 411
Score = 289 bits (742), Expect = 2e-93
Identities = 87/449 (19%), Positives = 168/449 (37%), Gaps = 71/449 (15%)
Query: 16 KPKKKWDVGGIKRANWKTINTQKLSEKSFWVKVKEE----ELASPDILTGLAQKFSSKPA 71
+P KK +K+ +W+ ++ ++ S W K E +L +L L + F+++
Sbjct: 4 RPHKK-----LKQLHWEKLDC---TDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREI 55
Query: 72 NKKADDNVDKCGTLKRYWTARQRRTSKKADDNVDKCGTLKRVKALKVLDSKAAQNLSILL 131
A + ++ + L +Q I L
Sbjct: 56 KSLAS-------------------------------KRKEDLQKITFLSRDISQQFGINL 84
Query: 132 GGSLKHYSYEEVKLSILRCDTNILSGNVLEQLIS--------------YLPPPDQLQRLK 177
S ++ IL CD + L + + +S Y P + ++
Sbjct: 85 H-MYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVR 143
Query: 178 ELS------GDYANLTEAEQF--AVTIAEIKRLLPRLKSMHFKQHFQEMYTDCHKNIING 229
L D +L A+Q + + R++++ ++ Y + +
Sbjct: 144 NLEDAKPPEKDPNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKV 203
Query: 230 KQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDIENKTTLL 289
+A +++S L + +IL +GN+MN S+ A GF+++ L +L+ KD N T L
Sbjct: 204 DKAVSALQESDNLRNVFNVILAVGNFMNDTSKQ--AQGFKLSTLQRLTFIKDTTNSMTFL 261
Query: 290 HYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDIQNCKQAP 349
+Y+ + +P F EL V +VS + + N + +I N+E ++ +
Sbjct: 262 NYVEKIVRLNYPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSD 321
Query: 350 VAN--ENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFD-KNIYTLEEFF 406
+ DK L P E R+K LL + K + + L Y D + + FF
Sbjct: 322 SSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFF 381
Query: 407 TDIKTFKDSFYQAWQENIKLREAEEKSIR 435
F + + +A +N+ E E I+
Sbjct: 382 KKFADFINEYKKAQAQNLAAEEEERLYIK 410
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.0 bits (165), Expect = 4e-12
Identities = 73/498 (14%), Positives = 136/498 (27%), Gaps = 153/498 (30%)
Query: 37 QKLSEKSFWVKVKEEELASPDILTGLAQKFSSKPANKKADDNVDKCGTLKR---YWTARQ 93
K+ K FW+ +K SP+ + + QK + + D +K A
Sbjct: 178 CKMDFKIFWLNLKNCN--SPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 94 RRTSKKAD--------DNV-DKCGTLKRVKAL----KVL-DSKAAQNLSILLGGSLKHYS 139
RR K NV + K A K+L ++ Q L + H S
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNA----KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 140 YEEVKLSILRCDTNILSGNVLEQLISYLPP--------------------PDQLQRLKEL 179
+ +++ + L L+ LP K +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 180 SGDYANLTEAEQFAVTIAEIKRLLPRLKSMHFKQHFQEMYTDCHKNIINGKQACEEVKQS 239
+ D LT I+ L L+ +++ F + +
Sbjct: 351 NCD--KLTTI---------IESSLNVLEPAEYRKMFDRLS------VFP-----PSAHIP 388
Query: 240 KKLAKIL------ELILLMGNYMNSGS---RNGGAFGFEINFLTKLSSTKDIENKTTLLH 290
L ++ ++++ N ++ S + I + L +EN+ LH
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY-LELKVKLENEYA-LH 446
Query: 291 YLVDTIEQ-KFPECLKFGDELL-------------HVDRAARVSTDVIQNSIRQMENNIK 336
+ ++ P+ D + H+ + +
Sbjct: 447 RSI--VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP----------ERMTLFR 494
Query: 337 NLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKI---TLLSNMSKNMMTLYGDLAEFY 393
+ D +FLE QKI + N S +++ L +FY
Sbjct: 495 MVFLDF-------------RFLE----------QKIRHDSTAWNASGSILNTLQQL-KFY 530
Query: 394 T--FDKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIRVREAR--EKAENEKKD 449
N E I F L + EE I + A + +
Sbjct: 531 KPYICDNDPKYERLVNAILDF-------------LPKIEENLICSKYTDLLRIALMAEDE 577
Query: 450 KAARKKALIDMTTDQTQQ 467
A+ + Q Q+
Sbjct: 578 ------AIFEEAHKQVQR 589
Score = 51.8 bits (123), Expect = 5e-07
Identities = 47/281 (16%), Positives = 84/281 (29%), Gaps = 62/281 (22%)
Query: 7 PPDVL---PLGLK--------PKKKWDVGGIKRANWKTINTQKLSEKSFWVKVKEEELAS 55
P +VL P L WD NWK +N KL+ ++ L
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWD-------NWKHVNCDKLTTI---IESSLNVL-E 367
Query: 56 PDILTGLAQKFSSKPANKKADDNVD-KCGTLKRYWTARQRRTSKK-ADDNVDKCGTLKRV 113
P + + S P + L W + + K+
Sbjct: 368 PAEYRKMFDRLSVFP------PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 114 KALKV------LDSKA-AQNLSILLGGSLKHYSYEEVKLSILRC-DTNILSGNVLE---- 161
K + L+ K +N L + HY +I + D++ L L+
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHY-------NIPKTFDSDDLIPPYLDQYFY 474
Query: 162 QLISY-LPPPDQLQRLKELSGDYANLT--EAEQFAVTIAEIKR-----LLPRLKSMHFKQ 213
I + L + +R+ + + E + + A L +LK +K
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF--YKP 532
Query: 214 HFQE---MYTDCHKNIINGKQACEEVKQSKKLAKILELILL 251
+ + Y I++ EE K +L + L+
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573
Score = 46.8 bits (110), Expect = 2e-05
Identities = 60/465 (12%), Positives = 132/465 (28%), Gaps = 130/465 (27%)
Query: 47 KVKEEELASPDILTGLAQKFSSKPANKKADDNVDKCGTLKRYWTARQRRTSKKADDNVDK 106
+ E + DIL+ F + D C ++ + + ++ D +
Sbjct: 10 ETGEHQYQYKDILSVFEDAF-------VDN--FD-CKDVQDM--PKSILSKEEIDHIIMS 57
Query: 107 CGTLKRVKAL-KVLDSKAAQNLSILLGGSLKHYSYEEVKLSILRCDTNILSGNVLEQLIS 165
+ L L SK + + + L+ +Y+ + +S ++ + S
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR-INYKFL-MSPIKTEQRQPSMMT----RM 111
Query: 166 YLPPPDQLQRLKELSGDYANLTEAEQFAVTIAEIKRLLPRLKSMHFKQHFQEMYTDCHKN 225
Y+ D+L ++ Y N++ + ++++ L L+ KN
Sbjct: 112 YIEQRDRLYNDNQVFAKY-NVSRLQP----YLKLRQALLELRP--------------AKN 152
Query: 226 II------NGKQA-CEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLT--KL 276
++ +GK +V S K+ F+I +L
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQC--------------------KMDFKIFWLNLKNC 192
Query: 277 SSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIR--QMENN 334
+S + + L Y +D ++ IQ +R
Sbjct: 193 NSPETVLEMLQKLLYQID----------PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 335 IKN----LETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLA 390
+N L ++QN + F + KI L + + L
Sbjct: 243 YENCLLVLL-NVQN-------------AKAWNAF--NLSCKILLTTRFKQVTDFLSAATT 286
Query: 391 EFYTFDKNIYTLEEF--------FTDIKTFKDSFYQAWQENIKLREAEEKSI-------- 434
+ D + TL + D + L E +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQD------------LPR-EVLTTNPRRLSII 333
Query: 435 --RVREAREKAENEKKDKAARKKALIDMTTDQTQQGVMDSLLEAL 477
+R+ +N K + +I+ + + + + + L
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Score = 46.4 bits (109), Expect = 2e-05
Identities = 34/275 (12%), Positives = 80/275 (29%), Gaps = 70/275 (25%)
Query: 271 NFLTKLSSTKDIE------NKTTLLHYLVDTIEQKFPECLK-FGDELLHVDRAARVSTDV 323
+ + S ++I+ + + L T+ K E ++ F +E+L ++
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN------YKF 93
Query: 324 IQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNM- 382
+ + I+ E ++ T + ++ + N+N F + + + L +
Sbjct: 94 LMSPIKT-EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 383 MTLYG---------------DLAEFYTFDKNIY--TLEEFFTD---IKTFKDSFYQAWQE 422
+ + G D I+ L+ + ++ + YQ
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 423 NIKLREAEEKSIRVREAREKAENEKKDKAARK---KALI--D------------------ 459
+ S ++ + E + K L+
Sbjct: 213 ---WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 460 MTTDQTQQGVMDSLLEALQT-------GSAFTREQ 487
+TT + V D L A T T ++
Sbjct: 270 LTT--RFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Score = 38.7 bits (89), Expect = 0.005
Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 17/122 (13%)
Query: 411 TFKD---SFYQAWQENIKLREAEEKSIRVREAREKAENEK----KDKAARKKALIDMTTD 463
+KD F A+ +N ++ ++ + K E + KD + L
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDM---PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 464 QTQQGVMDSLLEALQTGSAFTREQRRKRQNDRPMGAERRAQLNRSRSRNGIV------IT 517
+ ++ V + E L+ F + Q P R R R N ++
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 518 RE 519
R
Sbjct: 133 RL 134
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 4e-04
Identities = 41/252 (16%), Positives = 80/252 (31%), Gaps = 76/252 (30%)
Query: 182 DYANLTEAEQFAVTIAEIKRLLPRLKSMHFK----QHFQEMYTD-CHKNIINGKQACEEV 236
+ A+ + + +I +I P ++HF + +E Y+ + I++GK E++
Sbjct: 1647 NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI 1706
Query: 237 KQ--SKKLAKI--------LEL-------ILLMG----NYMNS-GSRNGGAF------GF 268
+ ++ L + LM + S G A G
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG- 1765
Query: 269 EINFLTKLSSTKDIENKTTLLHY---LVDTIEQKFPE---------------CLKFGDEL 310
E L L+ IE+ ++ Y + + F E
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA 1825
Query: 311 LH--VDRAARVSTDVIQNSIRQMENNIKNLETDIQNC--KQAPVANEN---DKFLEIMEP 363
L V+R + + +++ I N N +Q A + D ++
Sbjct: 1826 LQYVVERVGKRTGWLVE---------IVNY-----NVENQQYVAAGDLRALDTVTNVLN- 1870
Query: 364 FAKEVRQKITLL 375
F K QKI ++
Sbjct: 1871 FIKL--QKIDII 1880
Score = 39.3 bits (91), Expect = 0.003
Identities = 38/253 (15%), Positives = 75/253 (29%), Gaps = 83/253 (32%)
Query: 202 LLPRLKSMHFKQHFQEMYTDCHKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSR 261
L+P + F ++ +K + + E + EL+
Sbjct: 21 LVPT--ASFF--IASQLQEQFNKIL---PEPTEGFAADDEPTTPAELV------------ 61
Query: 262 NGGAFGFEINFLTKLSSTKDIENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVST 321
G F + +++ L + +L+ + E + L+ D +H AA++
Sbjct: 62 --GKF---LGYVSSLVEPSKVGQFDQVLNLCLTEFENCY---LEGND--IHA-LAAKLLQ 110
Query: 322 DVIQNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKN 381
+ ++ K L I+N A + PF K+ L + +
Sbjct: 111 ENDTTLVKT-----KEL---IKNYITARIM--------AKRPFDKKSNSA--LFRAVGEG 152
Query: 382 ---MMTLYG----------DLAEFYTFDKNIY-------------TLEEFFTDIKTFKDS 415
++ ++G +L + Y Y TL E +
Sbjct: 153 NAQLVAIFGGQGNTDDYFEELRDLY----QTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 416 FYQ-----AWQEN 423
F Q W EN
Sbjct: 209 FTQGLNILEWLEN 221
Score = 37.7 bits (87), Expect = 0.010
Identities = 56/331 (16%), Positives = 103/331 (31%), Gaps = 103/331 (31%)
Query: 139 SYEEVKLSILRC-DTNILSGNVLEQLISYLPPPDQ--LQRLKELSGDYANLTEAEQFAVT 195
+++V L + L GN + L + L + L + KEL +Y +
Sbjct: 79 QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 196 IAEIKRLLPRLKSMHFK-------Q-----HFQEM------YTDCHKNIIN--GKQACEE 235
L + + + Q +F+E+ Y ++I + E
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 236 VKQSKKLAKI----------LE-------------------LILL--MGNYMNSGSRNGG 264
++ + K+ LE LI + + +Y+ + G
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF 258
Query: 265 AFGFEINFLTKLSSTKDIENKTTLLHYLV--------DTIEQKFPECLKFGDELL----- 311
G + L T LV D+ E F ++ +L
Sbjct: 259 TPG---ELRSYLKGA------TGHSQGLVTAVAIAETDSWES-FFVSVRKAITVLFFIGV 308
Query: 312 HVDRAARVST---DVIQNSIRQMEN------NIKNLETDIQNCKQAPVANENDKFLEIME 362
A ++ ++++S+ E +I NL Q Q V N
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT---QEQVQDYVNKTNSHL----- 360
Query: 363 PFAKEVRQKITLLSNMSKNM------MTLYG 387
P K+V I+L+ N +KN+ +LYG
Sbjct: 361 PAGKQVE--ISLV-NGAKNLVVSGPPQSLYG 388
Score = 30.8 bits (69), Expect = 1.3
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 11/84 (13%)
Query: 414 DSFYQAWQENIKLREAEEKSIRVREAREKAENEKKDKA---ARKKALIDMTTDQTQQGVM 470
SF+ A Q L+E K + A++E A + + + ++ G
Sbjct: 25 ASFFIASQ----LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQF 80
Query: 471 DSLLEALQTGSAFTREQRRKRQND 494
D +L T F E ND
Sbjct: 81 DQVLNLCLT--EF--ENCYLEGND 100
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.9 bits (82), Expect = 0.013
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 19/86 (22%)
Query: 422 ENI-KLREAEEKSIRVREAREKAENEK-KDKAARKKALIDMTTDQTQQGVMDSLLEALQT 479
E+I K RE + K ++ +A K ++ ++KA KK L + Q++Q +E
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKA--KKDLEEWNQRQSEQ------VE---- 132
Query: 480 GSAFTREQRRKRQNDRPMGAERRAQL 505
+ + R D+ + A +
Sbjct: 133 -----KNKINNRIADKAFYQQPDADI 153
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.17
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 15/41 (36%)
Query: 325 QNSIRQMENNIKNLETDIQNCKQAPVANENDKFLEI---ME 362
+ ++++++ ++K D AP L I ME
Sbjct: 19 KQALKKLQASLKLYADD-----SAPA-------LAIKATME 47
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA
polymerase, teminal deoxynucleotidyltransferase,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 29.2 bits (65), Expect = 1.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 494 DRPMGAERRAQLNRSRSRNGIVITRELSNEV 524
++ MG RRA L R G + ELS+ V
Sbjct: 30 EKKMGTTRRALLMELARRKGFRVENELSDSV 60
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 29.6 bits (66), Expect = 1.5
Identities = 11/107 (10%), Positives = 35/107 (32%), Gaps = 1/107 (0%)
Query: 386 YGDLAEFYTFDKNIYTLEEFFTDI-KTFKDSFYQAWQENIKLREAEEKSIRVREAREKAE 444
A+ K +E I ++D+ Y++ ++L + +S ++ ++
Sbjct: 43 KLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELA 102
Query: 445 NEKKDKAARKKALIDMTTDQTQQGVMDSLLEALQTGSAFTREQRRKR 491
+ + + + ++ L L+ + +K
Sbjct: 103 ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKT 149
>2b1e_A Exocyst complex component EXO70; tethering complex,
endocytosis/exocytosis complex; 2.00A {Saccharomyces
cerevisiae} PDB: 2b7m_A 2pfv_A
Length = 564
Score = 30.2 bits (67), Expect = 2.1
Identities = 32/203 (15%), Positives = 65/203 (32%), Gaps = 23/203 (11%)
Query: 223 HKNIINGKQACEEVKQSKKLAKILELILLMGNYMNSGSRNGGAFGFEINFLTKLSSTKDI 282
H NI + + VK A E+IL G ++ +
Sbjct: 2 HMNIESTLNSVASVKDLANEASKYEIILQKGIN-------------QVGLKQYTQVVHKL 48
Query: 283 ENKTTLLHYLVDTIEQKFPECLKFGDELLHVDRAARVSTDVIQNSIRQMENNIKNLETDI 342
+ +L + + E +F L H+++ + S ++ + N+IK + I
Sbjct: 49 D---DMLEDIQSGQANR-EENSEFHGILTHLEQLIKRSEAQLRVYFISILNSIKPFDPQI 104
Query: 343 QNCKQAPVANENDKFLEIMEPFAKEVRQKITLLSNMSKNMMTLYGDLAEFYTFDKNIYTL 402
K+ P D+ L + ++ + + K + L
Sbjct: 105 NITKKMPFPYYEDQQLGALSWILDYFHG-----NSEGSIIQDILVGERSKL-ILKCMAFL 158
Query: 403 EEFFTDIKTFKDSFYQAWQENIK 425
E F +I T K++ Y+ +
Sbjct: 159 EPFAKEISTAKNAPYEKGSSGMN 181
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 28.5 bits (64), Expect = 5.9
Identities = 8/73 (10%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Query: 391 EFYTFDKNIYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIRVREAREKAENEKKDK 450
+ + F + ++ + + + + + + + E + + +
Sbjct: 320 DGHLF--VGMDVPAINSNKQDVTEEDFYKLVSGLTVTKGLRGAQATYEVYTEPWAQDSSQ 377
Query: 451 AARKKALIDMTTD 463
RKK ++D+ TD
Sbjct: 378 ETRKKTMVDLETD 390
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase,
glycosyltransferase, retaining mecha glucosyl
transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB:
2wvk_A* 2wvm_A*
Length = 391
Score = 28.2 bits (62), Expect = 6.9
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 170 PDQLQRLKELSGDYANLTEAEQFA--VTIAEIKRLLPRLKSMHFKQHFQEMYTDCHKNII 227
P +L L EL G L + E V I +I+ P L +H ++M C +
Sbjct: 272 PQELVSLLELYGGVFPLEDEEVLQHGVEIFQIETRNPHLHENKGDEHIRDMLLACLATVY 331
Query: 228 NGKQACEEVKQ 238
+ K A EEV+Q
Sbjct: 332 HSKLATEEVRQ 342
>2hhi_A Antigen MPT64, immunogenic protein MPT64; secreted antigen,
residual dipolar COUP solution structure, beta-grAsp,
unknown function; NMR {Mycobacterium tuberculosis}
Length = 204
Score = 27.6 bits (61), Expect = 8.9
Identities = 5/59 (8%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Query: 391 EFYTFDKN---IYTLEEFFTDIKTFKDSFYQAWQENIKLREAEEKSIRVREAREKAENE 446
+ + +D+ T + + + Q + + ++ SI + +
Sbjct: 106 KAFDWDQAYRKPITYDTLWQADTDPLPVVFPIVQGELSKQTGQQVSIAPNAGLDPVNYQ 164
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO
enzyme, structural genomics, protein structure
initiative; NMR {Desulfitobacterium hafniense dcb-2}
PDB: 2kw4_A
Length = 147
Score = 26.9 bits (60), Expect = 9.6
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 4/35 (11%)
Query: 19 KKWDVGGIKRANWKTINTQKLSEKSF----WVKVK 49
W G K N T KL + + KVK
Sbjct: 82 AFWATGEWKAKNEFTQAYAKLMNQYRGIYSFEKVK 116
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.368
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,849,387
Number of extensions: 470365
Number of successful extensions: 1369
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1321
Number of HSP's successfully gapped: 48
Length of query: 529
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 431
Effective length of database: 3,965,535
Effective search space: 1709145585
Effective search space used: 1709145585
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.6 bits)