BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15132
(786 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|347965864|ref|XP_321709.4| AGAP001421-PA [Anopheles gambiae str. PEST]
gi|333470320|gb|EAA01767.4| AGAP001421-PA [Anopheles gambiae str. PEST]
Length = 612
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 230/531 (43%), Positives = 321/531 (60%), Gaps = 70/531 (13%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DG ++ SFAMLATQLND+ L ++TI++I RY S V+ + VLII+EL +
Sbjct: 47 ISDGKSLYSFAMLATQLNDLQKQDKLPQYTIIRIDRYTTSVVNRNEKGEKRVLIIVELTV 106
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHN-------NVAIPRQASA 437
+K G+ +G KIG+PQP+ +T Q PA GS+ + N N ++ ++
Sbjct: 107 LKEGSLVGEKIGDPQPMTDTPSQPATTQAPARPMDTGSSSMGNGASYGSANRSLSGGSAG 166
Query: 438 PVVQ-----THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIR 492
P THPI SLSPYQNKW IKARV +K+ IR W+NA+G GKLFS+D++DESGEIR
Sbjct: 167 PTQSIGDSLTHPISSLSPYQNKWVIKARVMSKSGIRTWSNAKGEGKLFSMDVMDESGEIR 226
Query: 493 ATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEV 552
T F ++C+R++DMIE DKVY+IS C LKPANK+++S+ NDYEM+ T+ T V C +D
Sbjct: 227 ITAFKEQCDRYYDMIEVDKVYFISKCQLKPANKQYTSLKNDYEMTMTNDTIVQEC-KDAD 285
Query: 553 GNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS 612
G+MP ++Y FVP+ IA + P+ +DV+G+C DA+++ T KT+ + KR+ITLVD S
Sbjct: 286 GSMPEIQYNFVPISQIANMEPNAMVDVIGMCKDASDVVQFTAKTSGRELRKREITLVDSS 345
Query: 613 QASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGN----------------------- 649
ASV +TLWG +A+ F A+ PV+ +K ARVSEF G
Sbjct: 346 NASVQLTLWGDDAQNFPATTHPVVLLKGARVSEFGGGKSLGLIGGSVMKLNPDLEMAHKV 405
Query: 650 -----------------------------LLLMREIQDQQLGMGDKADYCSVRGIIQVFR 680
L +E +D+ LG GDK DY V+ +I +
Sbjct: 406 RGWFENGGSEASVSSVSARTGGAAGVSTEWLSFQEAKDKNLGAGDKPDYFQVKAMIHTIK 465
Query: 681 GSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLF 740
+N YKACP DCNKKVIDQ NG +RCEKCN EF F YRL++ ++IGDWT++ WVT+F
Sbjct: 466 SANAVYKACPQADCNKKVIDQENGQFRCEKCNAEFPNFKYRLLVNMLIGDWTSNRWVTVF 525
Query: 741 QNEAESILGVTAQEVGESTEDHPALKKALFT-----QYIFRLRAKLEHYNK 786
AE +LG ++QE+G S E + LFT ++F+LR K+E++ +
Sbjct: 526 TELAEEMLGKSSQEIGSSLEYQKEEAEKLFTSISFKSFVFKLRTKVEYFGE 576
Score = 311 bits (798), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 151/321 (47%), Positives = 212/321 (66%), Gaps = 8/321 (2%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK+++S+ NDYEM+ T+ T V C +D G+MP ++Y FVP+ IA + P+ +DV+G
Sbjct: 256 PANKQYTSLKNDYEMTMTNDTIVQEC-KDADGSMPEIQYNFVPISQIANMEPNAMVDVIG 314
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+C DA+++ T KT+ + KR+ITLVD S ASV +TLWG +A+ F A+ PV+ +K A
Sbjct: 315 MCKDASDVVQFTAKTSGRELRKREITLVDSSNASVQLTLWGDDAQNFPATTHPVVLLKGA 374
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAG 183
RVSEF GGK+L L SV+ LNPD+ HK++GWF + VS RTGG G +
Sbjct: 375 RVSEFGGGKSLGLIGGSVMKLNPDLEMAHKVRGWFENGGSEASVSSVSARTGG-AAGVST 433
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
L +E +D+ LG GDK DY V+ +I + +N YKACP DCNKKVIDQ NG +RC
Sbjct: 434 EWLSFQEAKDKNLGAGDKPDYFQVKAMIHTIKSANAVYKACPQADCNKKVIDQENGQFRC 493
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
EKCN EF F YRL++ ++IGDWT++ WVT+F AE +LG ++QE+G S E +
Sbjct: 494 EKCNAEFPNFKYRLLVNMLIGDWTSNRWVTVFTELAEEMLGKSSQEIGSSLEYQKEEAEK 553
Query: 304 LFT-----QYIFRLRAKLEHY 319
LFT ++F+LR K+E++
Sbjct: 554 LFTSISFKSFVFKLRTKVEYF 574
>gi|157133641|ref|XP_001662954.1| replication factor a 1, rfa1 [Aedes aegypti]
gi|108870757|gb|EAT34982.1| AAEL012826-PA [Aedes aegypti]
Length = 619
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 230/537 (42%), Positives = 329/537 (61%), Gaps = 80/537 (14%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DG N+ SFAMLATQLN++ +G L+EFT+++I RYI S V+ + VLIIL+L++
Sbjct: 48 ISDGQNLYSFAMLATQLNELHHNGQLAEFTVIRIDRYITSVVNRNEKGEKRVLIILDLHV 107
Query: 385 IKPGTEIGFKIGNPQPLN-----TNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQ----- 434
+KPG +G KIGNPQ L + +ST PA T + GS V N A +
Sbjct: 108 VKPGAAVGEKIGNPQTLTETGAGSGGGAASTSAVPARTESAGS--VSNGSAYQNRPMGGG 165
Query: 435 -ASAPV---------VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDL 484
+SAP THPI SLSPYQNKW I+ARV +K+ IR W+NA+G GKLFS+D+
Sbjct: 166 MSSAPSGGDGLSLENTLTHPINSLSPYQNKWVIRARVMSKSGIRTWSNAKGEGKLFSMDV 225
Query: 485 LDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTV 544
+DESGEIR T F D+C++++DMIE DKVYYI+ C LKPANK++S++ NDYEM+ T+ T V
Sbjct: 226 MDESGEIRVTAFKDQCDKYYDMIEVDKVYYITKCQLKPANKQYSTLKNDYEMTMTNDTIV 285
Query: 545 IPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKR 604
C +D +MPS++Y FVP+ I + P+ IDV+GVC +A E+ T +++ + KR
Sbjct: 286 QEC-KDAGSSMPSIQYNFVPISQIGNMEPNAMIDVIGVCKEAGEVMQFTARSSGRELKKR 344
Query: 605 DITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLL------------ 652
++TLVD S A+V++TLWG +A+ F+A+N PV+ +K ARV+EF G L
Sbjct: 345 EVTLVDSSNAAVSLTLWGDDAQNFNATNNPVLVIKGARVTEFGGGKSLGLVASSVLKTNP 404
Query: 653 ----------------------------------------MREIQDQQLGMGDKADYCSV 672
E +++ LG GDK DY V
Sbjct: 405 DNEEAHKIRGWYLGGGCDNVVNSVSTRTGAGAGYSTEWITFHEAKEKNLGAGDKPDYFQV 464
Query: 673 RGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWT 732
+ +I + +N YKACP +CNKKVIDQ+NG YRCEKCN +F F YRL++ +++GDWT
Sbjct: 465 KALIHNIKSANAVYKACPQAECNKKVIDQDNGQYRCEKCNADFPNFKYRLLVNMLVGDWT 524
Query: 733 NSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFT-----QYIFRLRAKLEHY 784
++ WVT+F + AE +LG ++Q++G++ E + + +F+ Y+F+LR K+E Y
Sbjct: 525 SNRWVTVFTDLAEQMLGKSSQDIGDALEFNKDEAEQIFSAINFKSYVFKLRTKVEFY 581
Score = 307 bits (787), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 143/326 (43%), Positives = 217/326 (66%), Gaps = 8/326 (2%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK++S++ NDYEM+ T+ T V C +D +MPS++Y FVP+ I + P+ IDV+G
Sbjct: 263 PANKQYSTLKNDYEMTMTNDTIVQEC-KDAGSSMPSIQYNFVPISQIGNMEPNAMIDVIG 321
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
VC +A E+ T +++ + KR++TLVD S A+V++TLWG +A+ F+A+N PV+ +K A
Sbjct: 322 VCKEAGEVMQFTARSSGRELKKREVTLVDSSNAAVSLTLWGDDAQNFNATNNPVLVIKGA 381
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGGGAAG 183
RV+EF GGK+L L SSVL NPD E HK++GW+ + VS RTG G G +
Sbjct: 382 RVTEFGGGKSLGLVASSVLKTNPDNEEAHKIRGWYLGGGCDNVVNSVSTRTGA-GAGYST 440
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ E +++ LG GDK DY V+ +I + +N YKACP +CNKKVIDQ+NG YRC
Sbjct: 441 EWITFHEAKEKNLGAGDKPDYFQVKALIHNIKSANAVYKACPQAECNKKVIDQDNGQYRC 500
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
EKCN +F F YRL++ +++GDWT++ WVT+F + AE +LG ++Q++G++ E + +
Sbjct: 501 EKCNADFPNFKYRLLVNMLVGDWTSNRWVTVFTDLAEQMLGKSSQDIGDALEFNKDEAEQ 560
Query: 304 LFT-----QYIFRLRAKLEHYNGTKK 324
+F+ Y+F+LR K+E Y + +
Sbjct: 561 IFSAINFKSYVFKLRTKVEFYGDSSR 586
>gi|170032512|ref|XP_001844125.1| replication protein A 70 kDa DNA-binding subunit [Culex
quinquefasciatus]
gi|167872595|gb|EDS35978.1| replication protein A 70 kDa DNA-binding subunit [Culex
quinquefasciatus]
Length = 615
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 225/531 (42%), Positives = 324/531 (61%), Gaps = 72/531 (13%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DG + SFAMLATQLN++ G L+EFT+++I R+I S V+ + VLIIL+L +
Sbjct: 48 ISDGQYLYSFAMLATQLNEMHHSGQLAEFTVIRIDRFITSVVNRNERGEKRVLIILDLTV 107
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSS--------TQQTPAATNTNGS---NGVHNNVAIPR 433
+KPG+ +G KIGNPQPL + S T+ A +NGS N ++++V+
Sbjct: 108 VKPGSAVGVKIGNPQPLTEGGNPSGGAASSGAPTRTESAGAVSNGSSYQNRLNSSVSASN 167
Query: 434 --QASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEI 491
Q+S THPI SLSPYQNKW IKARV +K+ IR W+NA+G GKLFS+D++DESGEI
Sbjct: 168 STQSSLQESLTHPINSLSPYQNKWVIKARVMSKSAIRTWSNAKGEGKLFSMDIMDESGEI 227
Query: 492 RATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDE 551
R T F ++C++F+DMIE DKVYYI+ C LKPANK++S++ NDYEM+ ++ T + C +D
Sbjct: 228 RVTAFKEQCDKFYDMIEADKVYYITKCQLKPANKQYSTLKNDYEMTMSNETIIQEC-KDV 286
Query: 552 VGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ 611
+MP ++Y FVP+ I + P+ IDV+GVC +A+EL++ T K++ + KR++T+VD
Sbjct: 287 DASMPGIQYNFVPISQITNMEPNAMIDVVGVCKEASELNTFTAKSSGRELTKREVTMVDS 346
Query: 612 SQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLL------------------- 652
S A+V +TLWG +A+ F S PV+ VK ARV+EF G L
Sbjct: 347 SNAAVQLTLWGADAQNFPTSTNPVVVVKGARVTEFGGGKSLGLVGGSVMKLNPDIDVAHK 406
Query: 653 ----------------------------------MREIQDQQLGMGDKADYCSVRGIIQV 678
E +++ LG GDK DY V+ ++
Sbjct: 407 IRGWYDNGGCDAVINSVSTRTGAAGGSYSTEWMTFHETKEKNLGHGDKPDYFQVKALVHN 466
Query: 679 FRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVT 738
+ N YKACP DCNKKV+DQ+NG YRCEKCN +F F YRL++ +++GDWT++ WVT
Sbjct: 467 IKSGNAVYKACPQTDCNKKVVDQDNGQYRCEKCNADFPNFKYRLLVNMLVGDWTSNRWVT 526
Query: 739 LFQNEAESILGVTAQEVGESTEDHPALKKALFT-----QYIFRLRAKLEHY 784
+F E +LG T+QE+G++ E + + +F+ +IF+LR K+E Y
Sbjct: 527 VFTELGEQMLGKTSQEIGDALEYNKDEAEQIFSNISFASFIFKLRTKVEFY 577
Score = 306 bits (783), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 140/321 (43%), Positives = 210/321 (65%), Gaps = 7/321 (2%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK++S++ NDYEM+ ++ T + C +D +MP ++Y FVP+ I + P+ IDV+G
Sbjct: 258 PANKQYSTLKNDYEMTMSNETIIQEC-KDVDASMPGIQYNFVPISQITNMEPNAMIDVVG 316
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
VC +A+EL++ T K++ + KR++T+VD S A+V +TLWG +A+ F S PV+ VK A
Sbjct: 317 VCKEASELNTFTAKSSGRELTKREVTMVDSSNAAVQLTLWGADAQNFPTSTNPVVVVKGA 376
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAG 183
RV+EF GGK+L L SV+ LNPDI HK++GW+ + VS RTG GG +
Sbjct: 377 RVTEFGGGKSLGLVGGSVMKLNPDIDVAHKIRGWYDNGGCDAVINSVSTRTGAAGGSYST 436
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ E +++ LG GDK DY V+ ++ + N YKACP DCNKKV+DQ+NG YRC
Sbjct: 437 EWMTFHETKEKNLGHGDKPDYFQVKALVHNIKSGNAVYKACPQTDCNKKVVDQDNGQYRC 496
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
EKCN +F F YRL++ +++GDWT++ WVT+F E +LG T+QE+G++ E + +
Sbjct: 497 EKCNADFPNFKYRLLVNMLVGDWTSNRWVTVFTELGEQMLGKTSQEIGDALEYNKDEAEQ 556
Query: 304 LFT-----QYIFRLRAKLEHY 319
+F+ +IF+LR K+E Y
Sbjct: 557 IFSNISFASFIFKLRTKVEFY 577
>gi|193667016|ref|XP_001951063.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Acyrthosiphon pisum]
Length = 609
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 229/524 (43%), Positives = 321/524 (61%), Gaps = 63/524 (12%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DG N+NSFAMLATQLN +++ G ++EF+I+QIKR+I+S ++ S ++ V+I+++L +
Sbjct: 47 ISDGHNLNSFAMLATQLNGMVSSGEINEFSILQIKRHIISSLTDRSKGSKQVMILIDLAV 106
Query: 385 IKPGTEIGFKIGNPQPLNTNTD-------NSSTQQTPAATNTNGSNGVHNNVAI-PRQAS 436
+ PG +G KIG+P+P+ N+ ++S TP + + S+ V ++V Q
Sbjct: 107 MVPGDVVGSKIGDPKPIIDNSGQIVENGASASVDSTPQSNSLAKSHSVQSSVINNGLQRD 166
Query: 437 APVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMF 496
V HPI SLSPYQNKWTI+ARV NK P+R WNN RG GKLFS+DLLDESGEIRAT F
Sbjct: 167 IDVSNIHPINSLSPYQNKWTIRARVVNKAPVRTWNNQRGEGKLFSMDLLDESGEIRATAF 226
Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
N EC++F DMIE +KVY+I+ +K ANKKFS++NNDYE++ + T + PC++ + MP
Sbjct: 227 NSECDKFFDMIEVNKVYFITRGAIKTANKKFSNLNNDYELTLSGETQIFPCHDFDDSQMP 286
Query: 557 SVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
++K+ FVPL + ++ D +DV+GVC A EL+ + KT +K KRD+T+VDQS +SV
Sbjct: 287 ALKFNFVPLSQVKDVDVDGIVDVIGVCQTAGELTMLMSKTTRKELKKRDVTIVDQSLSSV 346
Query: 617 TMTLWGKEAETFDASNKPVIAVKAARVSEFQGN--------------------------- 649
T+TLW +AE FD S +PVIA+K +R+ EF G+
Sbjct: 347 TITLWDTQAEDFDGSLQPVIAIKGSRIREFMGSKSLSLLGSTVMQINPDIDEAHRLRGWY 406
Query: 650 -----------------------LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTY 686
L ++ Q QLG GDKADY S+ + + + Y
Sbjct: 407 DSLPSNAEFTSISARSDVGANNQFLTIKGAQLAQLGSGDKADYYSMYSHLIFVKSESALY 466
Query: 687 KACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAES 746
KACP DC KKVID+N+G YRCEKCN E F YRL+L + D T + WVT+FQ AES
Sbjct: 467 KACPKPDCQKKVIDRNDGTYRCEKCNDETENFKYRLMLSAQLSDSTGNQWVTMFQETAES 526
Query: 747 ILGVTAQEVG----ESTEDHP-ALKKALFTQYIFRLRAKLEHYN 785
+LG T+ E+G ES E++ + +F + R RAK+E YN
Sbjct: 527 LLGTTSAELGRLMEESKEEYSDVFQNQMFKLFDIRARAKMETYN 570
Score = 285 bits (729), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 148/326 (45%), Positives = 210/326 (64%), Gaps = 9/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANKKFS++NNDYE++ + T + PC++ + MP++K+ FVPL + ++ D +DV+GV
Sbjct: 253 ANKKFSNLNNDYELTLSGETQIFPCHDFDDSQMPALKFNFVPLSQVKDVDVDGIVDVIGV 312
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C A EL+ + KT +K KRD+T+VDQS +SVT+TLW +AE FD S +PVIA+K +R
Sbjct: 313 CQTAGELTMLMSKTTRKELKKRDVTIVDQSLSSVTITLWDTQAEDFDGSLQPVIAIKGSR 372
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGGGAAGN 184
+ EF G K+LSL S+V+ +NPDI E H+L+GW+ S +N F +S R+ GA
Sbjct: 373 IREFMGSKSLSLLGSTVMQINPDIDEAHRLRGWYDSLPSNAEFTSISARS---DVGANNQ 429
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
L ++ Q QLG GDKADY S+ + + + YKACP DC KKVID+N+G YRCE
Sbjct: 430 FLTIKGAQLAQLGSGDKADYYSMYSHLIFVKSESALYKACPKPDCQKKVIDRNDGTYRCE 489
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG----ESTEDHP-A 299
KCN E F YRL+L + D T + WVT+FQ AES+LG T+ E+G ES E++
Sbjct: 490 KCNDETENFKYRLMLSAQLSDSTGNQWVTMFQETAESLLGTTSAELGRLMEESKEEYSDV 549
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ +F + R RAK+E YN ++
Sbjct: 550 FQNQMFKLFDIRARAKMETYNNETRL 575
>gi|195390608|ref|XP_002053960.1| GJ23056 [Drosophila virilis]
gi|194152046|gb|EDW67480.1| GJ23056 [Drosophila virilis]
Length = 609
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/537 (40%), Positives = 309/537 (57%), Gaps = 90/537 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG NS+AMLA+QLN++ G L+E TIV++ +Y+ S V + R VLI+ EL +
Sbjct: 47 MSDGKYYNSYAMLASQLNEMQNRGLLNENTIVRLDKYMTSMVGKEGSGKR-VLIVTELTV 105
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQT---PAATNTNGSNGVHNNVAIPRQASAPVVQ 441
+ G E+ KIG+P +N++ Q T PAA V +V + ++ S
Sbjct: 106 LNSGDEVKSKIGDP----VTYENAAKQDTAPKPAA--------VAASVPVKKEQSYNNNN 153
Query: 442 ------------------THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSID 483
THPI SLSPYQNKW IKARVT+KT IR W+NARG GKLFS+D
Sbjct: 154 NNNHTMNSTLNGTLNSSLTHPISSLSPYQNKWVIKARVTSKTAIRTWSNARGEGKLFSMD 213
Query: 484 LLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTT 543
L+DESGEIRAT F ++C++F+D+IE D VY+ S C LKPANK++S + NDYEM+FT+ T
Sbjct: 214 LMDESGEIRATAFKEQCDKFYDLIEVDNVYFFSKCQLKPANKQYSQLKNDYEMTFTNETM 273
Query: 544 VIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMK 603
V PC++++ G +P +K+ VP+ +A + E +D +G+C + EL + T +T K + K
Sbjct: 274 VQPCDDEDNGGIPEIKFDLVPISQVANMENKEAVDTIGICKEVGELQAFTSRTTNKEFKK 333
Query: 604 RDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG--------------- 648
R++TLVD S A+VT+TLWG EA FD +PVI VK +R++EF G
Sbjct: 334 RELTLVDMSNAAVTLTLWGDEAVNFDGHVQPVILVKGSRINEFNGGKSLSMGGGSILKIN 393
Query: 649 ------------------------------------NLLLMREIQDQQLGMGDKADYCSV 672
+ + +++ + + LG GDK DY
Sbjct: 394 PDIPEAHKLRGWFDNGGGDNISNMVSARTGGGSFSTDWVTLKDARLRNLGSGDKPDYFQC 453
Query: 673 RGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWT 732
+ ++ + + N YKACP DCNKKV+D+ NG YRCE+CN F F YRL++ + IGDWT
Sbjct: 454 KAVVHIVKQENAFYKACPQADCNKKVVDEGNGQYRCERCNAAFPNFKYRLLINMSIGDWT 513
Query: 733 NSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKAL-----FTQYIFRLRAKLEHY 784
++ WVT F E +L AQEVGE+ E+ PA + + F+ YIF+LR K E Y
Sbjct: 514 SNRWVTCFSETGEQLLKHNAQEVGEALENDPAAAEKMFADINFSSYIFKLRCKNEMY 570
Score = 316 bits (810), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 145/321 (45%), Positives = 208/321 (64%), Gaps = 8/321 (2%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK++S + NDYEM+FT+ T V PC++++ G +P +K+ VP+ +A + E +D +G
Sbjct: 252 PANKQYSQLKNDYEMTFTNETMVQPCDDEDNGGIPEIKFDLVPISQVANMENKEAVDTIG 311
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+C + EL + T +T K + KR++TLVD S A+VT+TLWG EA FD +PVI VK +
Sbjct: 312 ICKEVGELQAFTSRTTNKEFKKRELTLVDMSNAAVTLTLWGDEAVNFDGHVQPVILVKGS 371
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEP-VSQRTGGMGGGAAG 183
R++EF GGK+LS+ S+L +NPDIPE HKL+GWF VS RTG GG +
Sbjct: 372 RINEFNGGKSLSMGGGSILKINPDIPEAHKLRGWFDNGGGDNISNMVSARTG--GGSFST 429
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ + +++ + + LG GDK DY + ++ + + N YKACP DCNKKV+D+ NG YRC
Sbjct: 430 DWVTLKDARLRNLGSGDKPDYFQCKAVVHIVKQENAFYKACPQADCNKKVVDEGNGQYRC 489
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
E+CN F F YRL++ + IGDWT++ WVT F E +L AQEVGE+ E+ PA +
Sbjct: 490 ERCNAAFPNFKYRLLINMSIGDWTSNRWVTCFSETGEQLLKHNAQEVGEALENDPAAAEK 549
Query: 304 L-----FTQYIFRLRAKLEHY 319
+ F+ YIF+LR K E Y
Sbjct: 550 MFADINFSSYIFKLRCKNEMY 570
>gi|357603407|gb|EHJ63750.1| replication protein A1 [Danaus plexippus]
Length = 598
Score = 417 bits (1072), Expect = e-113, Method: Compositional matrix adjust.
Identities = 217/522 (41%), Positives = 307/522 (58%), Gaps = 64/522 (12%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG + +S A+L +QLN+ + G LS ++++++ +Y +S V + V++IL L I
Sbjct: 44 VSDGKHSHSLALLNSQLNNKVFSGELSNYSVIKVDKYFISSVQK--KEEKRVMVILNLTI 101
Query: 385 IKPGTEIGFKIGNP----QPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVV 440
I PG E+G K+G+P + + + + S+T+ P T SN I +S
Sbjct: 102 IAPGAEVGKKLGDPIQWSEDMTSPSYASTTKAEPKPVPTPMSNLSKTTAGINLNSSVLSS 161
Query: 441 Q-THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE 499
Q THPI SLSPYQNKW IKARV NKT IR W+NA+G GKLFS+DL DESGEIRAT F +E
Sbjct: 162 QMTHPIASLSPYQNKWVIKARVMNKTAIRTWSNAKGEGKLFSMDLCDESGEIRATAFKNE 221
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK 559
C++F+DMI+ DKVYYIS C LK ANK+++++ NDYEM+FT T V C E E ++PS+K
Sbjct: 222 CDKFYDMIQIDKVYYISRCQLKTANKQYTTLKNDYEMTFTADTVVSECME-ESNSVPSIK 280
Query: 560 YCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
Y F+P+ IA+ PD +DV+GVC A+++ +T K+ K KR+ TLVD S ++T+T
Sbjct: 281 YDFMPISDIADKGPDTILDVIGVCKSASDIQELTAKSTGKLLKKREATLVDSSGGAITLT 340
Query: 620 LWGKEAETFDASNKPVIAVKAARVSEFQGNLLL--------------------------- 652
LWG EAE FD S+ PV+AVK AR++EF G+ L
Sbjct: 341 LWGAEAEKFDGSSNPVVAVKGARLAEFNGSKSLSCLASTIVRVQPDVEEAHRLRGWYDNG 400
Query: 653 ------------------------MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKA 688
E ++++LG GDKADY S+ G++ N YKA
Sbjct: 401 GDSMAMVHISARVGQGGGNAEWMTFAEAEERRLGTGDKADYFSLLGVLTFTFADNAVYKA 460
Query: 689 CPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL 748
CP + CNKK++DQ NG+YRCEKCN+E+ + YRL+L + D T VT F AE +L
Sbjct: 461 CPQEQCNKKLVDQQNGLYRCEKCNREYPNYKYRLLLGATVSDPTGDQRVTAFNESAEVML 520
Query: 749 GVTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKLEHYN 785
G +A+EVG ++ A L F ++F+ R K+E Y+
Sbjct: 521 GRSAEEVGRLSDYDKAEYGQLLDHVKFKTFVFKFRTKIETYS 562
Score = 285 bits (729), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 138/326 (42%), Positives = 205/326 (62%), Gaps = 9/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+++++ NDYEM+FT T V C E E ++PS+KY F+P+ IA+ PD +DV+GV
Sbjct: 245 ANKQYTTLKNDYEMTFTADTVVSECME-ESNSVPSIKYDFMPISDIADKGPDTILDVIGV 303
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C A+++ +T K+ K KR+ TLVD S ++T+TLWG EAE FD S+ PV+AVK AR
Sbjct: 304 CKSASDIQELTAKSTGKLLKKREATLVDSSGGAITLTLWGAEAEKFDGSSNPVVAVKGAR 363
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGMGGGAAGN 184
++EF G K+LS S+++ + PD+ E H+L+GW+ ++ +S R G GG A
Sbjct: 364 LAEFNGSKSLSCLASTIVRVQPDVEEAHRLRGWYDNGGDSMAMVHISARVGQGGGNA--E 421
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ E ++++LG GDKADY S+ G++ N YKACP + CNKK++DQ NG+YRCE
Sbjct: 422 WMTFAEAEERRLGTGDKADYFSLLGVLTFTFADNAVYKACPQEQCNKKLVDQQNGLYRCE 481
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA----- 299
KCN+E+ + YRL+L + D T VT F AE +LG +A+EVG ++ A
Sbjct: 482 KCNREYPNYKYRLLLGATVSDPTGDQRVTAFNESAEVMLGRSAEEVGRLSDYDKAEYGQL 541
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
L F ++F+ R K+E Y+ K+
Sbjct: 542 LDHVKFKTFVFKFRTKIETYSDEAKL 567
>gi|345494357|ref|XP_003427279.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Nasonia vitripennis]
Length = 584
Score = 417 bits (1072), Expect = e-113, Method: Compositional matrix adjust.
Identities = 219/531 (41%), Positives = 312/531 (58%), Gaps = 74/531 (13%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+ NSF MLATQLND+IT+ TLSE +IV+IKRY +S V++G T R+V++IL + +
Sbjct: 44 VSDGILSNSFTMLATQLNDLITNNTLSEHSIVKIKRYAISTVNNG-GTQRNVMVILSIEV 102
Query: 385 IKPGTEIGFKIGNPQPLNTNTD-------------NSSTQQTPAATNTNGSNGVHNNVAI 431
+ PG EIG +GN NT T+ +++ Q A+ N H N ++
Sbjct: 103 LVPGHEIGRVLGNVNANNTRTEEAAPAATLATALRSNNQQNAKPASRINNPAVNHLNESL 162
Query: 432 PRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEI 491
+ + PI +LSPYQN+W IK RVTNK+PIR W+N+RG GKLFSIDLLDESGEI
Sbjct: 163 LNGGNG--INATPIAALSPYQNRWVIKVRVTNKSPIRTWSNSRGEGKLFSIDLLDESGEI 220
Query: 492 RATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDE 551
R T F D+C++F+DMIE KVYYIS C LKPANK+F+++ NDYEM+ T + + CNE+
Sbjct: 221 RCTAFRDQCDKFYDMIEIGKVYYISRCQLKPANKQFNNLKNDYEMTLTSDSEIAICNEEN 280
Query: 552 VGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ 611
G +P++++ FVP+ T+ S DE IDVLG+ +++ ++T +T + KRDI +VD+
Sbjct: 281 EG-IPTLQFDFVPINTVEAKSKDELIDVLGIVKTCSDIQTLTARTTGRELKKRDIGIVDE 339
Query: 612 SQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG--NL------------------- 650
+ +T+TLWG +A FD S PVIA+K A++ EF G NL
Sbjct: 340 NNDLITVTLWGTQAIDFDGSTNPVIAIKGAKIGEFNGGKNLSLVASSMLQVDPDIPQAHR 399
Query: 651 -------------------------------LLMREIQDQQLGMGDKADYCSVRGIIQVF 679
L +E++D + G D + + + +
Sbjct: 400 LRGWFKTVGATEESRSLSRTLGGGGNLNGPWLTFKEVEDNRFGHQDMPNMFIAKATVNLI 459
Query: 680 RGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTL 739
R N YK+CPS+ C KKVIDQ+NGMY+CEKC++++ FTYRL+ + DWT + W T
Sbjct: 460 RAENALYKSCPSEGCKKKVIDQSNGMYKCEKCSRDYPNFTYRLLASTNLVDWTGNQWATA 519
Query: 740 FQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYN 785
F EAE +L +AQE+GE E + A F YIF+LR +LE++N
Sbjct: 520 FNEEAEVLLSASAQELGELKEKDGDTYMEKIGAAAFKSYIFKLRIRLENFN 570
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 137/321 (42%), Positives = 202/321 (62%), Gaps = 6/321 (1%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK+F+++ NDYEM+ T + + CNE+ G +P++++ FVP+ T+ S DE IDVLG
Sbjct: 251 PANKQFNNLKNDYEMTLTSDSEIAICNEENEG-IPTLQFDFVPINTVEAKSKDELIDVLG 309
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+ +++ ++T +T + KRDI +VD++ +T+TLWG +A FD S PVIA+K A
Sbjct: 310 IVKTCSDIQTLTARTTGRELKKRDIGIVDENNDLITVTLWGTQAIDFDGSTNPVIAIKGA 369
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGN 184
++ EF GGK LSL SS+L ++PDIP+ H+L+GWF T T RT G GG G
Sbjct: 370 KIGEFNGGKNLSLVASSMLQVDPDIPQAHRLRGWFKTVGATEESRSLSRTLGGGGNLNGP 429
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
L +E++D + G D + + + + R N YK+CPS+ C KKVIDQ+NGMY+CE
Sbjct: 430 WLTFKEVEDNRFGHQDMPNMFIAKATVNLIRAENALYKSCPSEGCKKKVIDQSNGMYKCE 489
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PA 299
KC++++ FTYRL+ + DWT + W T F EAE +L +AQE+GE E
Sbjct: 490 KCSRDYPNFTYRLLASTNLVDWTGNQWATAFNEEAEVLLSASAQELGELKEKDGDTYMEK 549
Query: 300 LKKALFTQYIFRLRAKLEHYN 320
+ A F YIF+LR +LE++N
Sbjct: 550 IGAAAFKSYIFKLRIRLENFN 570
>gi|195108849|ref|XP_001999005.1| GI24276 [Drosophila mojavensis]
gi|193915599|gb|EDW14466.1| GI24276 [Drosophila mojavensis]
Length = 610
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/544 (39%), Positives = 304/544 (55%), Gaps = 102/544 (18%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG NS+AMLA+QLN++ G L+E TIV++ +Y+ S V + R VLI+ E+ +
Sbjct: 46 MSDGKYYNSYAMLASQLNEMQHKGLLNENTIVRLDKYMTSMVGKEGSGKR-VLIVTEVTV 104
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQ--- 441
+ G E+ KIG P +N++ Q T A P ASAPV +
Sbjct: 105 LNSGDEVKTKIGEP----VTYENAAKQDTVPK-------------AAPVTASAPVKKEQS 147
Query: 442 -------------------------THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGS 476
THPI SLSPYQNKW IKARVT+KT IR W+NARG
Sbjct: 148 YNNNNNNNNNNTMNSTMNGTLNASLTHPIASLSPYQNKWVIKARVTSKTAIRTWSNARGE 207
Query: 477 GKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEM 536
GKLFS+DL+DESGEIRAT F ++C++F+D+IE VY+ S C LKPANK++S + NDYEM
Sbjct: 208 GKLFSMDLMDESGEIRATAFKEQCDKFYDLIEVGNVYFFSKCQLKPANKQYSQLKNDYEM 267
Query: 537 SFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKT 596
+FT T V C+ED+ G +P +K+ +P+ ++ + E +D +G+C + EL + T +T
Sbjct: 268 TFTGETMVQLCDEDDNGGIPEIKFDLIPISQVSNMENKEAVDTIGICKEVGELQTFTSRT 327
Query: 597 NQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG-------- 648
K + KR++TLVD S A+VT+TLWG EA FD +PVI VK +R++EF G
Sbjct: 328 TNKEFKKRELTLVDMSNAAVTLTLWGDEAVNFDGHVQPVILVKGSRINEFNGGKSLSMGG 387
Query: 649 -------------------------------------------NLLLMREIQDQQLGMGD 665
+ + +++ + + LG GD
Sbjct: 388 GSILKINPDIPEAHKLRGWFDNGGGDNISTMVSARTGGGSFSTDWVTLKDARIRNLGSGD 447
Query: 666 KADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILP 725
K DY + ++ + + N YKACP DCNKKV+D+ NG YRCE+CN F F YRL++
Sbjct: 448 KPDYFQCKAVVHIVKQENAFYKACPQTDCNKKVVDEGNGQYRCERCNAAFPNFKYRLLIN 507
Query: 726 VMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQ-----YIFRLRAK 780
+ IGDWT++ WVT F E +L +AQEVG++ E+ PA + +F+ YIF+LR K
Sbjct: 508 MSIGDWTSNRWVTCFSEVGEQLLKHSAQEVGDALENDPATAEKMFSDINFSSYIFKLRCK 567
Query: 781 LEHY 784
E Y
Sbjct: 568 NEMY 571
Score = 311 bits (797), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 143/321 (44%), Positives = 207/321 (64%), Gaps = 8/321 (2%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK++S + NDYEM+FT T V C+ED+ G +P +K+ +P+ ++ + E +D +G
Sbjct: 253 PANKQYSQLKNDYEMTFTGETMVQLCDEDDNGGIPEIKFDLIPISQVSNMENKEAVDTIG 312
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+C + EL + T +T K + KR++TLVD S A+VT+TLWG EA FD +PVI VK +
Sbjct: 313 ICKEVGELQTFTSRTTNKEFKKRELTLVDMSNAAVTLTLWGDEAVNFDGHVQPVILVKGS 372
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEP-VSQRTGGMGGGAAG 183
R++EF GGK+LS+ S+L +NPDIPE HKL+GWF VS RTG GG +
Sbjct: 373 RINEFNGGKSLSMGGGSILKINPDIPEAHKLRGWFDNGGGDNISTMVSARTG--GGSFST 430
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ + +++ + + LG GDK DY + ++ + + N YKACP DCNKKV+D+ NG YRC
Sbjct: 431 DWVTLKDARIRNLGSGDKPDYFQCKAVVHIVKQENAFYKACPQTDCNKKVVDEGNGQYRC 490
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
E+CN F F YRL++ + IGDWT++ WVT F E +L +AQEVG++ E+ PA +
Sbjct: 491 ERCNAAFPNFKYRLLINMSIGDWTSNRWVTCFSEVGEQLLKHSAQEVGDALENDPATAEK 550
Query: 304 LFTQ-----YIFRLRAKLEHY 319
+F+ YIF+LR K E Y
Sbjct: 551 MFSDINFSSYIFKLRCKNEMY 571
>gi|195572613|ref|XP_002104290.1| GD20882 [Drosophila simulans]
gi|194200217|gb|EDX13793.1| GD20882 [Drosophila simulans]
Length = 603
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 220/524 (41%), Positives = 304/524 (58%), Gaps = 69/524 (13%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DG NS+AMLA+QLN + +G L EFTIVQ+ +Y+ S V A R VLII EL +
Sbjct: 46 ISDGKYFNSYAMLASQLNVMQHNGELEEFTIVQLDKYVTSLVGKDGAGKR-VLIISELTV 104
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQ---TPAATNTNG----SNGVHNNVAIPRQASA 437
+ PG E+ KIG P +N++ Q PAAT+ + +HNN S+
Sbjct: 105 VNPGAEVKSKIGEP----VTYENAAKQDLAPKPAATSNSKPVAKKEPIHNNNNNVVMNSS 160
Query: 438 -PVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMF 496
THPI SLSPYQNKW IKARVT+K+ IR W+NARG GKLFS+DL+DESGEIRAT F
Sbjct: 161 INSGMTHPISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDLMDESGEIRATAF 220
Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
++C++F+D+I+ D VYYIS C LKPANK++SS+NN YEM+F+ T V C + + +P
Sbjct: 221 KEQCDKFYDLIQVDSVYYISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIP 280
Query: 557 SVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
+KY VP+ ++ + +D +G+C + EL S +T K + KRDITLVD S +++
Sbjct: 281 EIKYNLVPISDVSGMENKAAVDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAI 340
Query: 617 TMTLWGKEAETFDASNKPVIAVKAARVSEFQ----------------------------- 647
++TLWG +A FD +PVI VK R++EF
Sbjct: 341 SLTLWGDDAVNFDGHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWF 400
Query: 648 --------GNLLLMR--------------EIQDQQLGMGDKADYCSVRGIIQVFRGSNTT 685
N++ R + + + LG GDK DY + ++ + + N
Sbjct: 401 DNGGGDSVANMVSARTGGGSFSTEWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQENAF 460
Query: 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
Y+ACP DCNKKVID+ N +RCEKCN F F YRL++ + IGDWT++ WV+ F E
Sbjct: 461 YRACPQSDCNKKVIDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGE 520
Query: 746 SILGVTAQEVGESTEDHPALKKAL-----FTQYIFRLRAKLEHY 784
+LG T+QEVGE+ E+ PA + + FT +IF+LR K E Y
Sbjct: 521 QLLGHTSQEVGEALENDPAKAEQIFSALNFTSHIFKLRCKNEVY 564
Score = 280 bits (715), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 139/321 (43%), Positives = 203/321 (63%), Gaps = 8/321 (2%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK++SS+NN YEM+F+ T V C + + +P +KY VP+ ++ + +D +G
Sbjct: 246 PANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNLVPISDVSGMENKAAVDTIG 305
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+C + EL S +T K + KRDITLVD S +++++TLWG +A FD +PVI VK
Sbjct: 306 ICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWGDDAVNFDGHVQPVILVKGT 365
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST-QTNTRFEPVSQRTGGMGGGAAG 183
R++EF GGK+LSL S++ +NPDIPE HKL+GWF ++ VS RTG GG +
Sbjct: 366 RINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWFDNGGGDSVANMVSARTG--GGSFST 423
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ +++ + + LG GDK DY + ++ + + N Y+ACP DCNKKVID+ N +RC
Sbjct: 424 EWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQENAFYRACPQSDCNKKVIDEGNDQFRC 483
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
EKCN F F YRL++ + IGDWT++ WV+ F E +LG T+QEVGE+ E+ PA +
Sbjct: 484 EKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLGHTSQEVGEALENDPAKAEQ 543
Query: 304 L-----FTQYIFRLRAKLEHY 319
+ FT +IF+LR K E Y
Sbjct: 544 IFSALNFTSHIFKLRCKNEVY 564
>gi|195330772|ref|XP_002032077.1| GM26360 [Drosophila sechellia]
gi|194121020|gb|EDW43063.1| GM26360 [Drosophila sechellia]
Length = 603
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 219/524 (41%), Positives = 304/524 (58%), Gaps = 69/524 (13%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DG NS+AMLA+QLN + +G L EFTIVQ+ +Y+ S V A R VLII EL +
Sbjct: 46 ISDGKYFNSYAMLASQLNVMQHNGELEEFTIVQLDKYVTSLVGKDGAGKR-VLIISELTV 104
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQ---TPAATNTNG----SNGVHNNVAIPRQASA 437
+ PG E+ KIG P +N++ Q PAAT+ + +HNN S+
Sbjct: 105 VNPGAEVKSKIGEP----VTYENAAKQDLAPKPAATSNSKPVAKKEPIHNNNNNVVMNSS 160
Query: 438 -PVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMF 496
THPI SLSPYQNKW IKARVT+K+ IR W+NARG GKLFS+DL+DESGEIRAT F
Sbjct: 161 INSGMTHPISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDLMDESGEIRATAF 220
Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
++C++F+D+I+ D VYYIS C LKPANK++SS+NN YEM+F+ T V C + + +P
Sbjct: 221 KEQCDKFYDLIQVDSVYYISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIP 280
Query: 557 SVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
+KY VP+ ++ + +D +G+C + EL S +T K + KRDITLVD S +++
Sbjct: 281 EIKYNLVPISDVSGMENKAAVDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAI 340
Query: 617 TMTLWGKEAETFDASNKPVIAVKAARVSEFQ----------------------------- 647
++TLWG +A FD +PVI VK R++EF
Sbjct: 341 SLTLWGDDAVNFDGHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWF 400
Query: 648 --------GNLLLMR--------------EIQDQQLGMGDKADYCSVRGIIQVFRGSNTT 685
N++ R + + + LG GDK DY + ++ + + N
Sbjct: 401 DNGGGDSVANMVSARTGGGSFSTEWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQENAF 460
Query: 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
Y+ACP DCNKKV+D+ N +RCEKCN F F YRL++ + IGDWT++ WV+ F E
Sbjct: 461 YRACPQSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGE 520
Query: 746 SILGVTAQEVGESTEDHPALKKAL-----FTQYIFRLRAKLEHY 784
+LG T+QEVGE+ E+ PA + + FT +IF+LR K E Y
Sbjct: 521 QLLGHTSQEVGEALENDPAKAEQIFSALNFTSHIFKLRCKNEVY 564
Score = 279 bits (714), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 138/321 (42%), Positives = 203/321 (63%), Gaps = 8/321 (2%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK++SS+NN YEM+F+ T V C + + +P +KY VP+ ++ + +D +G
Sbjct: 246 PANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNLVPISDVSGMENKAAVDTIG 305
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+C + EL S +T K + KRDITLVD S +++++TLWG +A FD +PVI VK
Sbjct: 306 ICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWGDDAVNFDGHVQPVILVKGT 365
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST-QTNTRFEPVSQRTGGMGGGAAG 183
R++EF GGK+LSL S++ +NPDIPE HKL+GWF ++ VS RTG GG +
Sbjct: 366 RINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWFDNGGGDSVANMVSARTG--GGSFST 423
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ +++ + + LG GDK DY + ++ + + N Y+ACP DCNKKV+D+ N +RC
Sbjct: 424 EWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQENAFYRACPQSDCNKKVVDEGNDQFRC 483
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
EKCN F F YRL++ + IGDWT++ WV+ F E +LG T+QEVGE+ E+ PA +
Sbjct: 484 EKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLGHTSQEVGEALENDPAKAEQ 543
Query: 304 L-----FTQYIFRLRAKLEHY 319
+ FT +IF+LR K E Y
Sbjct: 544 IFSALNFTSHIFKLRCKNEVY 564
>gi|17737841|ref|NP_524274.1| replication protein A 70 [Drosophila melanogaster]
gi|2498844|sp|Q24492.1|RFA1_DROME RecName: Full=Replication protein A 70 kDa DNA-binding subunit;
Short=RP-A p70; AltName: Full=Replication factor A
protein 1; Short=RF-A protein 1; AltName:
Full=Single-stranded DNA-binding protein; Short=DmRPA1
gi|1359608|emb|CAA94241.1| replication protein A [Drosophila melanogaster]
gi|7299004|gb|AAF54206.1| replication protein A 70 [Drosophila melanogaster]
gi|17861998|gb|AAL39476.1| LD04815p [Drosophila melanogaster]
gi|220943002|gb|ACL84044.1| RpA-70-PA [synthetic construct]
gi|220953088|gb|ACL89087.1| RpA-70-PA [synthetic construct]
Length = 603
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 216/524 (41%), Positives = 300/524 (57%), Gaps = 69/524 (13%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DG NS+AMLA+QLN + +G L EFTIVQ+ +Y+ S V A R VLII EL +
Sbjct: 46 ISDGKYFNSYAMLASQLNVMQHNGELEEFTIVQLDKYVTSLVGKDGAGKR-VLIISELTV 104
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQ-TPAATNTNGSNGVHNN-------VAIPRQAS 436
+ PG E+ KIG P +N++ Q P T+ S + I +S
Sbjct: 105 VNPGAEVKSKIGEP----VTYENAAKQDLAPKPAVTSNSKPIAKKEPSHNNNNNIVMNSS 160
Query: 437 APVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMF 496
THPI SLSPYQNKW IKARVT+K+ IR W+NARG GKLFS+DL+DESGEIRAT F
Sbjct: 161 INSGMTHPISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDLMDESGEIRATAF 220
Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
++C++F+D+I+ D VYYIS C LKPANK++SS+NN YEM+F+ T V C + + +P
Sbjct: 221 KEQCDKFYDLIQVDSVYYISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIP 280
Query: 557 SVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
+KY VP+ ++ + +D +G+C + EL S +T K + KRDITLVD S +++
Sbjct: 281 EIKYNLVPISDVSGMENKAAVDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAI 340
Query: 617 TMTLWGKEAETFDASNKPVIAVKAARVSEFQ----------------------------- 647
++TLWG +A FD +PVI VK R++EF
Sbjct: 341 SLTLWGDDAVNFDGHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWF 400
Query: 648 --------GNLLLMR--------------EIQDQQLGMGDKADYCSVRGIIQVFRGSNTT 685
N++ R + + + LG GDK DY + ++ + + N
Sbjct: 401 DNGGGDSVANMVSARTGGGSFSTEWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQENAF 460
Query: 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
Y+ACP DCNKKV+D+ N +RCEKCN F F YRL++ + IGDWT++ WV+ F E
Sbjct: 461 YRACPQSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGE 520
Query: 746 SILGVTAQEVGESTEDHPALKKAL-----FTQYIFRLRAKLEHY 784
+LG T+QEVGE+ E+ PA + + FT +IF+LR K E Y
Sbjct: 521 QLLGHTSQEVGEALENDPAKAEQIFSALNFTSHIFKLRCKNEVY 564
Score = 279 bits (714), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 138/321 (42%), Positives = 203/321 (63%), Gaps = 8/321 (2%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK++SS+NN YEM+F+ T V C + + +P +KY VP+ ++ + +D +G
Sbjct: 246 PANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNLVPISDVSGMENKAAVDTIG 305
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+C + EL S +T K + KRDITLVD S +++++TLWG +A FD +PVI VK
Sbjct: 306 ICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWGDDAVNFDGHVQPVILVKGT 365
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST-QTNTRFEPVSQRTGGMGGGAAG 183
R++EF GGK+LSL S++ +NPDIPE HKL+GWF ++ VS RTG GG +
Sbjct: 366 RINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWFDNGGGDSVANMVSARTG--GGSFST 423
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ +++ + + LG GDK DY + ++ + + N Y+ACP DCNKKV+D+ N +RC
Sbjct: 424 EWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQENAFYRACPQSDCNKKVVDEGNDQFRC 483
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
EKCN F F YRL++ + IGDWT++ WV+ F E +LG T+QEVGE+ E+ PA +
Sbjct: 484 EKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLGHTSQEVGEALENDPAKAEQ 543
Query: 304 L-----FTQYIFRLRAKLEHY 319
+ FT +IF+LR K E Y
Sbjct: 544 IFSALNFTSHIFKLRCKNEVY 564
>gi|195499032|ref|XP_002096775.1| GE24866 [Drosophila yakuba]
gi|194182876|gb|EDW96487.1| GE24866 [Drosophila yakuba]
Length = 603
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 214/524 (40%), Positives = 302/524 (57%), Gaps = 69/524 (13%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DG NS+AMLA+QLN + +G L EFTIVQ+ +Y+ S V A R VLII EL +
Sbjct: 46 ISDGKYFNSYAMLASQLNVMQHNGELEEFTIVQLDKYVTSLVGKDGAGKR-VLIISELTV 104
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQ-TPAATNTNGSNGVHNN-------VAIPRQAS 436
+ PG E+ KIG P +N++ Q P A + S V + AS
Sbjct: 105 VNPGAEVKSKIGEP----VTYENAAKQDLAPKAAAPSNSKPVAKKEPAHNNNNNVVMNAS 160
Query: 437 APVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMF 496
THPI SLSPYQNKW IKARVT+K+ IR W+NARG GKLFS+DL+DESGEIRAT F
Sbjct: 161 INSGMTHPISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDLMDESGEIRATAF 220
Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
++C++F+D+I+ D VYYIS C LKPANK++SS+NN YEM+F+ T V C + + +P
Sbjct: 221 KEQCDKFYDLIQVDSVYYISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIP 280
Query: 557 SVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
+KY +P+ ++ + +D +G+C + EL S +T K + KR+ITLVD S +++
Sbjct: 281 EIKYNLIPISDVSGMENKAAVDTIGICKEVGELQSFVARTTNKEFKKREITLVDMSNSAI 340
Query: 617 TMTLWGKEAETFDASNKPVIAVKAARVSEFQ----------------------------- 647
++TLWG EA FD +PVI VK +R++EF
Sbjct: 341 SLTLWGDEAVNFDGHVQPVILVKGSRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWF 400
Query: 648 ------------------GNL----LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT 685
GN + +++ + + LG GDK DY + ++ + + N
Sbjct: 401 DNGGGDNVANMVSARTGGGNFSTEWMTLKDARTRNLGSGDKPDYFQCKAVVHIVKQENAF 460
Query: 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
Y+ACP DCNKKV+D+ N +RCEKCN F F YRL++ + IGDWT++ WV+ F E
Sbjct: 461 YRACPQSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGE 520
Query: 746 SILGVTAQEVGESTEDHPALKKAL-----FTQYIFRLRAKLEHY 784
+LG ++QEVGE+ E+ PA + + FT +IF+LR K E +
Sbjct: 521 QLLGHSSQEVGEALENDPAKAEQIFSALNFTSHIFKLRCKNEVF 564
Score = 276 bits (705), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 202/321 (62%), Gaps = 8/321 (2%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK++SS+NN YEM+F+ T V C + + +P +KY +P+ ++ + +D +G
Sbjct: 246 PANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNLIPISDVSGMENKAAVDTIG 305
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+C + EL S +T K + KR+ITLVD S +++++TLWG EA FD +PVI VK +
Sbjct: 306 ICKEVGELQSFVARTTNKEFKKREITLVDMSNSAISLTLWGDEAVNFDGHVQPVILVKGS 365
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRF-EPVSQRTGGMGGGAAG 183
R++EF GGK+LSL S++ +NPDIPE HKL+GWF VS RTG GG +
Sbjct: 366 RINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWFDNGGGDNVANMVSARTG--GGNFST 423
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ +++ + + LG GDK DY + ++ + + N Y+ACP DCNKKV+D+ N +RC
Sbjct: 424 EWMTLKDARTRNLGSGDKPDYFQCKAVVHIVKQENAFYRACPQSDCNKKVVDEGNDQFRC 483
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
EKCN F F YRL++ + IGDWT++ WV+ F E +LG ++QEVGE+ E+ PA +
Sbjct: 484 EKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLGHSSQEVGEALENDPAKAEQ 543
Query: 304 L-----FTQYIFRLRAKLEHY 319
+ FT +IF+LR K E +
Sbjct: 544 IFSALNFTSHIFKLRCKNEVF 564
>gi|383854350|ref|XP_003702684.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Megachile rotundata]
Length = 591
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 223/522 (42%), Positives = 301/522 (57%), Gaps = 72/522 (13%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG INSF MLATQLN +ITD L+EF+I QI RY +S V + R V++IL +++
Sbjct: 44 VSDGKRINSFTMLATQLNSMITDNILTEFSICQINRYAISMVHNAGKQKR-VMVILNIDV 102
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQ----ASAPVV 440
G E+G KIGNP + +D S+ PA NV +P+Q +S +
Sbjct: 103 KVRGNEVGHKIGNPTNAESESD-STPASAPAPPQ-------QRNVLMPKQNTHQSSTSDI 154
Query: 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDEC 500
T PIV+LSPYQN+W IKARV +K+ IR W+N+RG GKLFS+DL+DESGEIR T F D+C
Sbjct: 155 STTPIVALSPYQNRWVIKARVLSKSDIRTWSNSRGEGKLFSMDLVDESGEIRCTAFRDQC 214
Query: 501 NRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKY 560
++F+DM+E KVYYIS TLK ANK+F+ + NDYEM+ T T +IPC+ D +P++++
Sbjct: 215 DKFYDMLEVGKVYYISRATLKTANKQFNHLKNDYEMTLTGDTEIIPCH-DGGNEIPTLQF 273
Query: 561 CFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTL 620
F P+ + +E IDV+ + A+L +T + + KRDI LVDQS V TL
Sbjct: 274 NFQPISDVETKEKNEYIDVIAIVKSCADLQLLTSRNTGREMKKRDIFLVDQSSTMVCFTL 333
Query: 621 WGKEAETFDASNKPVIAVKAARVSEFQG--NL---------------------------- 650
WGKEAE FD SN PVIAVK ARV EF G NL
Sbjct: 334 WGKEAEEFDGSNNPVIAVKGARVGEFNGGKNLSSLSSTVIQINPDIPEAHRLHGWFNATG 393
Query: 651 ----------------------LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKA 688
L +E ++ +LG Y V+ I + R N YK+
Sbjct: 394 HNEEAKSISRTFGGGGNISGPWLTFKEAREMELGFKGPEMYM-VKATINMIRIENAVYKS 452
Query: 689 CPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL 748
CPS+ C KK+IDQ N MYRCEKC+KE+ + YRL+ + + DWT++ W T F EAE IL
Sbjct: 453 CPSESCKKKLIDQANDMYRCEKCDKEYPNYRYRLLASLSLADWTDNQWATAFSEEAEKIL 512
Query: 749 GVTAQEVGESTE-DHPA----LKKALFTQYIFRLRAKLEHYN 785
G+TAQE+GE E D+ A A F ++F++R KLE ++
Sbjct: 513 GITAQELGELQENDNDAYLEKFADATFKSFLFKIRVKLETFS 554
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 143/325 (44%), Positives = 198/325 (60%), Gaps = 7/325 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+ + NDYEM+ T T +IPC+ D +P++++ F P+ + +E IDV+ +
Sbjct: 237 ANKQFNHLKNDYEMTLTGDTEIIPCH-DGGNEIPTLQFNFQPISDVETKEKNEYIDVIAI 295
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
A+L +T + + KRDI LVDQS V TLWGKEAE FD SN PVIAVK AR
Sbjct: 296 VKSCADLQLLTSRNTGREMKKRDIFLVDQSSTMVCFTLWGKEAEEFDGSNNPVIAVKGAR 355
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
V EF GGK LS S+V+ +NPDIPE H+L GWF+ + RT G GG +G
Sbjct: 356 VGEFNGGKNLSSLSSTVIQINPDIPEAHRLHGWFNATGHNEEAKSISRTFGGGGNISGPW 415
Query: 186 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 245
L +E ++ +LG Y V+ I + R N YK+CPS+ C KK+IDQ N MYRCEK
Sbjct: 416 LTFKEAREMELGFKGPEMYM-VKATINMIRIENAVYKSCPSESCKKKLIDQANDMYRCEK 474
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPA----L 300
C+KE+ + YRL+ + + DWT++ W T F EAE ILG+TAQE+GE E D+ A
Sbjct: 475 CDKEYPNYRYRLLASLSLADWTDNQWATAFSEEAEKILGITAQELGELQENDNDAYLEKF 534
Query: 301 KKALFTQYIFRLRAKLEHYNGTKKI 325
A F ++F++R KLE ++ ++
Sbjct: 535 ADATFKSFLFKIRVKLETFSDENRL 559
>gi|194904079|ref|XP_001980997.1| GG17466 [Drosophila erecta]
gi|190652700|gb|EDV49955.1| GG17466 [Drosophila erecta]
Length = 603
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 213/520 (40%), Positives = 301/520 (57%), Gaps = 61/520 (11%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DG NS+AMLA+QLN + +G L EFTIVQ+ +Y+ S V A R VLII EL +
Sbjct: 46 ISDGKYFNSYAMLASQLNVMQHNGELEEFTIVQLDKYVTSLVGKDGAGKR-VLIISELTV 104
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTN----GSNGVHNNVAIPRQASAPVV 440
+ PG E+ KIG P + A +N+ G +NN + +S
Sbjct: 105 VNPGAEVKSKIGEPVTYENAAKQDLAPKAAAPSNSKPVAKKEPGHNNNNNVVMNSSINSG 164
Query: 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDEC 500
THPI SLSPYQNKW IKARVT+K+ IR W+NARG GKLFS+DL+DESGEIRAT F ++C
Sbjct: 165 MTHPISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDLMDESGEIRATAFKEQC 224
Query: 501 NRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKY 560
++F D+I+ D VYYIS C LKPANK++SS+NN YEM+F+ T V C++ + +P +KY
Sbjct: 225 DKFFDLIQVDSVYYISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCDDTDDDPIPEIKY 284
Query: 561 CFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTL 620
+P+ ++ + +D +G+C + EL S +T K + KR+ITLVD S +++++TL
Sbjct: 285 NLIPISDVSGMENKAAVDTIGICKEVGELQSFVARTTNKEFKKREITLVDMSNSAISLTL 344
Query: 621 WGKEAETFDASNKPVIAVKAARVSEFQ--------------------------------- 647
WG EA FD +PVI VK +R++EF
Sbjct: 345 WGDEAVNFDGHVQPVILVKGSRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWFDNGG 404
Query: 648 --------------GNL----LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKAC 689
GN + +++ + + LG GDK DY + ++ + + N Y+AC
Sbjct: 405 GDNVANMVSARTGGGNFSTEWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQENAFYRAC 464
Query: 690 PSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILG 749
P DCNKKV+D+ N +RCEKCN F F YRL++ + IGDWT++ WV+ F E +LG
Sbjct: 465 PQSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLG 524
Query: 750 VTAQEVGESTEDHPALKKAL-----FTQYIFRLRAKLEHY 784
T+QEVGE+ E+ PA + + FT +IF+LR K E +
Sbjct: 525 HTSQEVGEALENDPAKAEQIFSALNFTSHIFKLRCKNEVF 564
Score = 277 bits (709), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 136/321 (42%), Positives = 203/321 (63%), Gaps = 8/321 (2%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK++SS+NN YEM+F+ T V C++ + +P +KY +P+ ++ + +D +G
Sbjct: 246 PANKQYSSLNNAYEMTFSGETVVQLCDDTDDDPIPEIKYNLIPISDVSGMENKAAVDTIG 305
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+C + EL S +T K + KR+ITLVD S +++++TLWG EA FD +PVI VK +
Sbjct: 306 ICKEVGELQSFVARTTNKEFKKREITLVDMSNSAISLTLWGDEAVNFDGHVQPVILVKGS 365
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRF-EPVSQRTGGMGGGAAG 183
R++EF GGK+LSL S++ +NPDIPE HKL+GWF VS RTG GG +
Sbjct: 366 RINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWFDNGGGDNVANMVSARTG--GGNFST 423
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ +++ + + LG GDK DY + ++ + + N Y+ACP DCNKKV+D+ N +RC
Sbjct: 424 EWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQENAFYRACPQSDCNKKVVDEGNDQFRC 483
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
EKCN F F YRL++ + IGDWT++ WV+ F E +LG T+QEVGE+ E+ PA +
Sbjct: 484 EKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLGHTSQEVGEALENDPAKAEQ 543
Query: 304 L-----FTQYIFRLRAKLEHY 319
+ FT +IF+LR K E +
Sbjct: 544 IFSALNFTSHIFKLRCKNEVF 564
>gi|427789109|gb|JAA60006.1| Putative replication factor a 1 rfa1 replication factor a 1 rfa1
[Rhipicephalus pulchellus]
Length = 600
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 222/532 (41%), Positives = 313/532 (58%), Gaps = 81/532 (15%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGV +++AML TQLN +IT+ + +F +VQ+ +Y+ + VS ++ VLI+L+L +
Sbjct: 44 LSDGVQCHTYAMLGTQLNGMITNNEIDKFAVVQLDKYMCNVVSP----DKKVLIVLDLTV 99
Query: 385 IKPGTEIGFKIGNP----------QPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQ 434
I G+ +G ++G+P QP + + QQ AA + S G N A P
Sbjct: 100 IAKGSTVGCRLGSPVIPASSSGAAQPTDGGANKPPLQQNSAAPSAAPSFG---NRAYPAS 156
Query: 435 ASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRAT 494
S VV PI SL+PYQN+WTI+ARVTNK+ IR W+N++G GKLFS+DLLDESGEIRAT
Sbjct: 157 TSDVVVV--PIASLTPYQNRWTIRARVTNKSGIRNWSNSKGEGKLFSMDLLDESGEIRAT 214
Query: 495 MFNDECNRFHDMIEKDKVYYISNCTLKPANK--KFSSINNDYEMSFTHSTTVIPCNEDEV 552
FN EC+RF+D+IE +KVYYIS +K K FSSI ND+EMS TT+ PC +D
Sbjct: 215 AFNAECDRFYDVIEVNKVYYISRAVIKNVKKGYSFSSIKNDFEMSLISETTITPC-DDVT 273
Query: 553 GNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS 612
N+P++++ FVP+ + EIS D IDV+GVC A+++ +VT +T + KRD++LVD+S
Sbjct: 274 PNIPTLQFNFVPISRLQEISKDSVIDVIGVCKSASDVQTVTRRTTSQELKKRDVSLVDRS 333
Query: 613 QASVTMTLWGKEAETFDASNKPVIAVKAARVSEF-------------------------- 646
V++TLWG +AE FD S+ PV+AVK ARVS+F
Sbjct: 334 GTEVSLTLWGDQAEKFDGSDNPVVAVKGARVSDFSGVSLSLISSSMLQVNPDIPESHALM 393
Query: 647 -----QGNLLLMREIQDQQ--------------------LGMGDKADYCSVRGIIQVFRG 681
+G LL + Q+ LG GDK DY SV+ + + R
Sbjct: 394 GWYSREGTLLQTHSLSTQRGGPMGGNANWKSIAQAKAEGLGQGDKPDYYSVKACVSIIRK 453
Query: 682 SNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQ 741
N YKACPS++CNKKV+D G YRCEKC +E F +RL++ + D+++ WVT F
Sbjct: 454 ENCLYKACPSENCNKKVVDLQTGYYRCEKCAQETMEFKWRLLVSANLTDFSDGQWVTCFG 513
Query: 742 NEAESILGVTAQEVGE-----STED---HPALKKALFTQYIFRLRAKLEHYN 785
EAE+++G +A+++GE S ED L F +IFRLR K+E YN
Sbjct: 514 KEAETLIGASAEDLGEMYSNSSKEDSRYEDILNDVPFKPFIFRLRTKMEVYN 565
Score = 272 bits (695), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 149/330 (45%), Positives = 211/330 (63%), Gaps = 14/330 (4%)
Query: 10 FSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDA 69
FSSI ND+EMS TT+ PC +D N+P++++ FVP+ + EIS D IDV+GVC A
Sbjct: 249 FSSIKNDFEMSLISETTITPC-DDVTPNIPTLQFNFVPISRLQEISKDSVIDVIGVCKSA 307
Query: 70 AELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEF 129
+++ +VT +T + KRD++LVD+S V++TLWG +AE FD S+ PV+AVK ARVS+F
Sbjct: 308 SDVQTVTRRTTSQELKKRDVSLVDRSGTEVSLTLWGDQAEKFDGSDNPVVAVKGARVSDF 367
Query: 130 QGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVS-QRTGGMGGGAAGNLLL 187
G +LSL SS+L +NPDIPE H L GW+S + T + +S QR G MGG A N
Sbjct: 368 SG-VSLSLISSSMLQVNPDIPESHALMGWYSREGTLLQTHSLSTQRGGPMGGNA--NWKS 424
Query: 188 MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCN 247
+ + + + LG GDK DY SV+ + + R N YKACPS++CNKKV+D G YRCEKC
Sbjct: 425 IAQAKAEGLGQGDKPDYYSVKACVSIIRKENCLYKACPSENCNKKVVDLQTGYYRCEKCA 484
Query: 248 KEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-----STED---HPA 299
+E F +RL++ + D+++ WVT F EAE+++G +A+++GE S ED
Sbjct: 485 QETMEFKWRLLVSANLTDFSDGQWVTCFGKEAETLIGASAEDLGEMYSNSSKEDSRYEDI 544
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKIPDGV 329
L F +IFRLR K+E YN ++ V
Sbjct: 545 LNDVPFKPFIFRLRTKMEVYNDESRLKTSV 574
>gi|194764875|ref|XP_001964553.1| GF23244 [Drosophila ananassae]
gi|190614825|gb|EDV30349.1| GF23244 [Drosophila ananassae]
Length = 603
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 212/524 (40%), Positives = 295/524 (56%), Gaps = 69/524 (13%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DG NS+AMLA+QLN++ G L EFTIVQ+ +Y+ S V A R VLII EL +
Sbjct: 46 ISDGKYFNSYAMLASQLNEMQHKGQLEEFTIVQLDKYVTSMVGKDGAGKR-VLIISELTV 104
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVA--------IPRQAS 436
+ PG ++ KIG P +N+S Q A A I +S
Sbjct: 105 LNPGADVKAKIGEP----VTYENASKQDLAAKPAPPPVAAAKKEPAHNNNNNNNITMNSS 160
Query: 437 APVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMF 496
THPI SLSPYQNKW IKARVT+KT IR W+NARG GKLFS+DL+DESGEIRAT F
Sbjct: 161 MNAGMTHPISSLSPYQNKWVIKARVTSKTAIRTWSNARGEGKLFSMDLMDESGEIRATAF 220
Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
++C++F+D+I+ D VY+ S C LKPANK++S ++N YEM+FT T V C + + G +P
Sbjct: 221 KEQCDKFYDLIQVDSVYFFSKCQLKPANKQYSQLDNAYEMTFTGETIVQLCEDADDGAIP 280
Query: 557 SVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
+KY VP+ ++ + +D +G+C + EL S +T K + KRD+TLVD S +++
Sbjct: 281 DIKYNLVPISEVSGMENKAAVDTIGICKEVGELQSFVSRTTNKEFKKRDLTLVDMSNSAI 340
Query: 617 TMTLWGKEAETFDASNKPVIAVKAARVSEFQ----------------------------- 647
+TLWG +A FD +PVI VK R++EF
Sbjct: 341 NLTLWGDDAVNFDGHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWF 400
Query: 648 ------------------GNL----LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT 685
GN + ++ +++ LG GDK DY + ++ + + N
Sbjct: 401 DNGGGDNIANMVSARTGGGNFSTDWMTFKDARERNLGSGDKPDYFQCKAVVHIVKQENAF 460
Query: 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
Y+ACP DCNKKV+D+ N YRCE+CN + F YRL++ + IGDWT++ WVT F E
Sbjct: 461 YRACPQTDCNKKVVDEGNDQYRCERCNALYPNFKYRLLVNMSIGDWTSNRWVTCFNEIGE 520
Query: 746 SILGVTAQEVGESTEDHPALKKAL-----FTQYIFRLRAKLEHY 784
+LG T+QEVGE+ E+ A + + FT +IF+LR K E Y
Sbjct: 521 QLLGHTSQEVGEALENDAAKAEQIFSSLNFTSHIFKLRCKNESY 564
Score = 278 bits (710), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 137/326 (42%), Positives = 202/326 (61%), Gaps = 8/326 (2%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK++S ++N YEM+FT T V C + + G +P +KY VP+ ++ + +D +G
Sbjct: 246 PANKQYSQLDNAYEMTFTGETIVQLCEDADDGAIPDIKYNLVPISEVSGMENKAAVDTIG 305
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+C + EL S +T K + KRD+TLVD S +++ +TLWG +A FD +PVI VK
Sbjct: 306 ICKEVGELQSFVSRTTNKEFKKRDLTLVDMSNSAINLTLWGDDAVNFDGHVQPVILVKGT 365
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRF-EPVSQRTGGMGGGAAG 183
R++EF GGK+LSL S++ +NPDIPE HKL+GWF VS RTG GG +
Sbjct: 366 RINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWFDNGGGDNIANMVSARTG--GGNFST 423
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ + ++ +++ LG GDK DY + ++ + + N Y+ACP DCNKKV+D+ N YRC
Sbjct: 424 DWMTFKDARERNLGSGDKPDYFQCKAVVHIVKQENAFYRACPQTDCNKKVVDEGNDQYRC 483
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
E+CN + F YRL++ + IGDWT++ WVT F E +LG T+QEVGE+ E+ A +
Sbjct: 484 ERCNALYPNFKYRLLVNMSIGDWTSNRWVTCFNEIGEQLLGHTSQEVGEALENDAAKAEQ 543
Query: 304 L-----FTQYIFRLRAKLEHYNGTKK 324
+ FT +IF+LR K E Y T +
Sbjct: 544 IFSSLNFTSHIFKLRCKNESYGDTTR 569
>gi|380025907|ref|XP_003696705.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Apis florea]
Length = 601
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 211/527 (40%), Positives = 311/527 (59%), Gaps = 74/527 (14%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG +NSF MLATQLN +ITD L+EF+I QI RY +S V++ R V++IL +++
Sbjct: 44 VSDGKRVNSFTMLATQLNSMITDNILTEFSICQINRYAISMVNNAGKQKR-VMVILNIDL 102
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAA----------TNTNGSNGVHNNVAIPRQ 434
G E+G KIGNP T D+ Q +A +N HN +Q
Sbjct: 103 KVSGDEVGHKIGNPTNAETEGDSKQAQIVQSAQSAQPVPQQQSNITNLKSNHN----MQQ 158
Query: 435 ASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRAT 494
+S + T PIV+LSPYQN+W IKARV +K+ IR W+N+RG GKLFS+DL+DESGEIR T
Sbjct: 159 SSTNNISTTPIVALSPYQNRWVIKARVVSKSNIRTWSNSRGEGKLFSMDLIDESGEIRCT 218
Query: 495 MFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN 554
F +EC++F+DM+E KVYYIS TLKPANK+F+++ NDYEM+ + +IPC+ D +
Sbjct: 219 AFRNECDKFYDMLEIGKVYYISRATLKPANKQFNNLKNDYEMTLIGDSEIIPCH-DSGDD 277
Query: 555 MPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA 614
+PS+++ FV + I + ++ +D+LG+ ++ +L +T + + + KRD+ LVD+S
Sbjct: 278 IPSLQFDFVSINDINKKEQNDIMDILGIVKNSGDLQILTSRNSGRELKKRDVNLVDESNT 337
Query: 615 SVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG--NL---------------------- 650
VT+TLWG +AE FD S+ PV+AVK AR++EF G NL
Sbjct: 338 MVTLTLWGSQAEEFDGSSNPVLAVKGARITEFNGGKNLSTLSSTVLQIDPDLPAAHRLRG 397
Query: 651 ----------------------------LLMREIQDQQLGMGDKADYCSVRGIIQVFRGS 682
+ +E +D +LG + +D +V+ + + R
Sbjct: 398 WFNTMGRNEEATSLSKPFGSTTGVSELWITFQEAKDMELGYKN-SDIYTVKATLNMIRME 456
Query: 683 NTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQN 742
N YKACPS++C KK++DQ N MYRCEKC+KE+ + YRL+ + + DWT++ W+T F +
Sbjct: 457 NAIYKACPSENCKKKLVDQANDMYRCEKCDKEYPNYRYRLLANISLADWTDNQWITAFND 516
Query: 743 EAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHY 784
EAE IL TAQE+GE E+ +A F +IF++R K+E +
Sbjct: 517 EAEKILSSTAQELGELKENDIDAYSEKFSEATFKSFIFKIRVKVEVF 563
Score = 273 bits (697), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 127/326 (38%), Positives = 205/326 (62%), Gaps = 7/326 (2%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK+F+++ NDYEM+ + +IPC+ D ++PS+++ FV + I + ++ +D+LG
Sbjct: 246 PANKQFNNLKNDYEMTLIGDSEIIPCH-DSGDDIPSLQFDFVSINDINKKEQNDIMDILG 304
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+ ++ +L +T + + + KRD+ LVD+S VT+TLWG +AE FD S+ PV+AVK A
Sbjct: 305 IVKNSGDLQILTSRNSGRELKKRDVNLVDESNTMVTLTLWGSQAEEFDGSSNPVLAVKGA 364
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGN 184
R++EF GGK LS S+VL ++PD+P H+L+GWF+T + G G +
Sbjct: 365 RITEFNGGKNLSTLSSTVLQIDPDLPAAHRLRGWFNTMGRNEEATSLSKPFGSTTGVSEL 424
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ +E +D +LG + +D +V+ + + R N YKACPS++C KK++DQ N MYRCE
Sbjct: 425 WITFQEAKDMELGYKN-SDIYTVKATLNMIRMENAIYKACPSENCKKKLVDQANDMYRCE 483
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PA 299
KC+KE+ + YRL+ + + DWT++ W+T F +EAE IL TAQE+GE E+
Sbjct: 484 KCDKEYPNYRYRLLANISLADWTDNQWITAFNDEAEKILSSTAQELGELKENDIDAYSEK 543
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+A F +IF++R K+E + ++
Sbjct: 544 FSEATFKSFIFKIRVKVEVFGDENRL 569
>gi|110756775|ref|XP_001121722.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit isoform
1 [Apis mellifera]
Length = 597
Score = 400 bits (1029), Expect = e-108, Method: Compositional matrix adjust.
Identities = 210/521 (40%), Positives = 310/521 (59%), Gaps = 66/521 (12%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG +NSF MLATQLN +IT+ L+EF+I QI RY +S V++ R V++IL +++
Sbjct: 44 VSDGKRVNSFTMLATQLNSMITENILTEFSICQINRYAISMVNNAGKQKR-VMVILNIDL 102
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIP----RQASAPVV 440
PG E+G KIGNP N D S Q A + P +Q+S +
Sbjct: 103 KVPGDEVGHKIGNPT--NAEADGDSKPQAQIAQSAQSVVPQQQTNLKPNHNMQQSSTNNI 160
Query: 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDEC 500
T PIV+LSPYQN+W IKARV +K+ IR W+N+RG GKLFS+DL+DESGEIR T F +EC
Sbjct: 161 STTPIVALSPYQNRWVIKARVVSKSNIRTWSNSRGEGKLFSMDLIDESGEIRCTAFRNEC 220
Query: 501 NRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKY 560
++F+DM+E KVYYIS TLKPANK+F+++ NDYEM+ + +IPC+ D ++PS+++
Sbjct: 221 DKFYDMLEIGKVYYISRATLKPANKQFNNLKNDYEMTLIGDSEIIPCH-DSGDDIPSLQF 279
Query: 561 CFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTL 620
FV + I + ++ +++LG+ + +L +T + + + KRD++LVD+S +VT+TL
Sbjct: 280 DFVSINDINKKEQNDIMNILGIVKYSGDLQILTSRNSGRELRKRDVSLVDESNTTVTLTL 339
Query: 621 WGKEAETFDASNKPVIAVKAARVSEFQG--NL---------------------------- 650
WG +AE FD S+ PV+AVK AR++EF G NL
Sbjct: 340 WGSQAEEFDGSSNPVLAVKGARITEFNGGKNLSTLSSTVLQIDPDLPAAHRLRGWFNTMG 399
Query: 651 ----------------------LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKA 688
+ +E +D +LG + +D +V+ + + R N YKA
Sbjct: 400 RNEEATSLSKPFGSTTGVSELWITFQEAKDMELGYKN-SDIYTVKATLNMIRMENAIYKA 458
Query: 689 CPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL 748
CPS++C KK++DQ N MYRCEKC+KE+ + YRL+ + + DWT++ WVT F +EAE IL
Sbjct: 459 CPSENCKKKLVDQANDMYRCEKCDKEYPNYRYRLLANISLADWTDNQWVTAFNDEAEKIL 518
Query: 749 GVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHY 784
TAQE+GE E+ +A F +IF++R K+E +
Sbjct: 519 SSTAQELGELKENDIDAYSEKFSEATFKSFIFKIRVKVEVF 559
Score = 271 bits (693), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 127/326 (38%), Positives = 206/326 (63%), Gaps = 7/326 (2%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK+F+++ NDYEM+ + +IPC+ D ++PS+++ FV + I + ++ +++LG
Sbjct: 242 PANKQFNNLKNDYEMTLIGDSEIIPCH-DSGDDIPSLQFDFVSINDINKKEQNDIMNILG 300
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+ + +L +T + + + KRD++LVD+S +VT+TLWG +AE FD S+ PV+AVK A
Sbjct: 301 IVKYSGDLQILTSRNSGRELRKRDVSLVDESNTTVTLTLWGSQAEEFDGSSNPVLAVKGA 360
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGN 184
R++EF GGK LS S+VL ++PD+P H+L+GWF+T + G G +
Sbjct: 361 RITEFNGGKNLSTLSSTVLQIDPDLPAAHRLRGWFNTMGRNEEATSLSKPFGSTTGVSEL 420
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ +E +D +LG + +D +V+ + + R N YKACPS++C KK++DQ N MYRCE
Sbjct: 421 WITFQEAKDMELGYKN-SDIYTVKATLNMIRMENAIYKACPSENCKKKLVDQANDMYRCE 479
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PA 299
KC+KE+ + YRL+ + + DWT++ WVT F +EAE IL TAQE+GE E+
Sbjct: 480 KCDKEYPNYRYRLLANISLADWTDNQWVTAFNDEAEKILSSTAQELGELKENDIDAYSEK 539
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+A F +IF++R K+E + ++
Sbjct: 540 FSEATFKSFIFKIRVKVEVFGDENRL 565
>gi|198452404|ref|XP_001358758.2| GA21928 [Drosophila pseudoobscura pseudoobscura]
gi|198131919|gb|EAL27901.2| GA21928 [Drosophila pseudoobscura pseudoobscura]
Length = 603
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 209/519 (40%), Positives = 294/519 (56%), Gaps = 60/519 (11%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DG NS+AMLA+QLN++ G L EFTIVQ+ +Y+ S V A R VLII EL +
Sbjct: 46 ISDGKYFNSYAMLASQLNEMQHKGQLDEFTIVQLDKYVTSMVGKDGAGKR-VLIISELTV 104
Query: 385 IKPGTEIGFKIGNPQPL-NTNTDNSSTQQTPAATNTN--GSNGVHNNVAIPRQASAPVVQ 441
+ G E+ KIG P N + + P + +NN I AS
Sbjct: 105 LNAGAEVKEKIGEPVTYENAAKQDKVAKAAPPVVPKKEVTQSNNNNNNNITLNASIGAGM 164
Query: 442 THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECN 501
THPI SLSPYQNKW IKARVT+KT IR W+N RG GKLFS+DL+DESGEIRAT F ++C+
Sbjct: 165 THPISSLSPYQNKWVIKARVTSKTGIRTWSNPRGEGKLFSMDLMDESGEIRATAFKEQCD 224
Query: 502 RFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC 561
++ DMI+ D VY+ S C LKPANK+FS +NN YEM+FT T V C + + G +P +KY
Sbjct: 225 KYFDMIQVDSVYFFSKCQLKPANKQFSQLNNAYEMTFTGETAVQLCEDADDGAIPDIKYN 284
Query: 562 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
VP+ ++ + +D +G+C + EL + T +T K + KRD+TLVD S +++++TLW
Sbjct: 285 LVPISEVSGMENKAAVDTIGICKEVGELQAFTSRTTNKEFKKRDLTLVDMSNSAISLTLW 344
Query: 622 GKEAETFDASNKPVIAVKAARVSEFQG--------------------------------- 648
G +A FD +PVI VK R++EF G
Sbjct: 345 GDDAVNFDGHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWFDNGGG 404
Query: 649 ------------------NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP 690
+ + +++ + + LG GDK DY + ++ + + N Y+ACP
Sbjct: 405 DNVANMVSARTGGGSFSTDWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQENAFYRACP 464
Query: 691 SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGV 750
DCNKKV+D+ N YRCE+CN + F YRL++ + +GDWT++ WVT F E +L
Sbjct: 465 QADCNKKVVDEGNDQYRCERCNALYPNFKYRLLVNMSVGDWTSNRWVTCFNETGEQLLKH 524
Query: 751 TAQEVGESTEDHPALKKAL-----FTQYIFRLRAKLEHY 784
T+QE+GE+ E+ P + + FT +IF+LR K E Y
Sbjct: 525 TSQEIGEALENDPTKAEEIFSALNFTSHIFKLRCKNEVY 563
Score = 278 bits (710), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 201/321 (62%), Gaps = 8/321 (2%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK+FS +NN YEM+FT T V C + + G +P +KY VP+ ++ + +D +G
Sbjct: 245 PANKQFSQLNNAYEMTFTGETAVQLCEDADDGAIPDIKYNLVPISEVSGMENKAAVDTIG 304
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+C + EL + T +T K + KRD+TLVD S +++++TLWG +A FD +PVI VK
Sbjct: 305 ICKEVGELQAFTSRTTNKEFKKRDLTLVDMSNSAISLTLWGDDAVNFDGHVQPVILVKGT 364
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRF-EPVSQRTGGMGGGAAG 183
R++EF GGK+LSL S++ +NPDIPE HKL+GWF VS RTG GG +
Sbjct: 365 RINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWFDNGGGDNVANMVSARTG--GGSFST 422
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ + +++ + + LG GDK DY + ++ + + N Y+ACP DCNKKV+D+ N YRC
Sbjct: 423 DWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQENAFYRACPQADCNKKVVDEGNDQYRC 482
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
E+CN + F YRL++ + +GDWT++ WVT F E +L T+QE+GE+ E+ P +
Sbjct: 483 ERCNALYPNFKYRLLVNMSVGDWTSNRWVTCFNETGEQLLKHTSQEIGEALENDPTKAEE 542
Query: 304 L-----FTQYIFRLRAKLEHY 319
+ FT +IF+LR K E Y
Sbjct: 543 IFSALNFTSHIFKLRCKNEVY 563
>gi|195145076|ref|XP_002013522.1| GL24182 [Drosophila persimilis]
gi|194102465|gb|EDW24508.1| GL24182 [Drosophila persimilis]
Length = 603
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 209/519 (40%), Positives = 294/519 (56%), Gaps = 60/519 (11%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DG NS+AMLA+QLN++ G L EFTIVQ+ +Y+ S V A R VLII EL +
Sbjct: 46 ISDGKYFNSYAMLASQLNEMQHKGQLDEFTIVQLDKYVTSMVGKDGAGKR-VLIISELTV 104
Query: 385 IKPGTEIGFKIGNPQPL-NTNTDNSSTQQTPAATNTN--GSNGVHNNVAIPRQASAPVVQ 441
+ G E+ KIG P N + + P + +NN I AS
Sbjct: 105 LNAGAEVKEKIGEPVTYENAAKQDKVAKAAPPVVPKKEVTQSNNNNNNNITLNASIGAGM 164
Query: 442 THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECN 501
THPI SLSPYQNKW IKARVT+KT IR W+N RG GKLFS+DL+DESGEIRAT F ++C+
Sbjct: 165 THPISSLSPYQNKWVIKARVTSKTGIRTWSNPRGEGKLFSMDLMDESGEIRATAFKEQCD 224
Query: 502 RFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC 561
++ DMI+ D VY+ S C LKPANK+FS +NN YEM+FT T V C + + G +P +KY
Sbjct: 225 KYFDMIQVDSVYFFSKCQLKPANKQFSQLNNAYEMTFTGETAVQLCEDADDGAIPDIKYN 284
Query: 562 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
VP+ ++ + +D +G+C + EL + T +T K + KRD+TLVD S +++++TLW
Sbjct: 285 LVPISEVSGMENKAAVDTIGICKEVGELQAFTSRTTNKEFKKRDLTLVDMSNSAISLTLW 344
Query: 622 GKEAETFDASNKPVIAVKAARVSEFQG--------------------------------- 648
G +A FD +PVI VK R++EF G
Sbjct: 345 GDDAVNFDGHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWFDNGGG 404
Query: 649 ------------------NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP 690
+ + +++ + + LG GDK DY + ++ + + N Y+ACP
Sbjct: 405 DNVANMVSARTGGGSFSTDWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQENAFYRACP 464
Query: 691 SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGV 750
DCNKKV+D+ N YRCE+CN + F YRL++ + +GDWT++ WVT F E +L
Sbjct: 465 QADCNKKVVDEGNDQYRCERCNALYPNFKYRLLVNMSVGDWTSNRWVTCFNETGEQLLKH 524
Query: 751 TAQEVGESTEDHPALKKAL-----FTQYIFRLRAKLEHY 784
T+QE+GE+ E+ P + + FT +IF+LR K E Y
Sbjct: 525 TSQEIGEALENDPTKAEEIFSALNFTSHIFKLRCKNEVY 563
Score = 278 bits (710), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 201/321 (62%), Gaps = 8/321 (2%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK+FS +NN YEM+FT T V C + + G +P +KY VP+ ++ + +D +G
Sbjct: 245 PANKQFSQLNNAYEMTFTGETAVQLCEDADDGAIPDIKYNLVPISEVSGMENKAAVDTIG 304
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+C + EL + T +T K + KRD+TLVD S +++++TLWG +A FD +PVI VK
Sbjct: 305 ICKEVGELQAFTSRTTNKEFKKRDLTLVDMSNSAISLTLWGDDAVNFDGHVQPVILVKGT 364
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRF-EPVSQRTGGMGGGAAG 183
R++EF GGK+LSL S++ +NPDIPE HKL+GWF VS RTG GG +
Sbjct: 365 RINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWFDNGGGDNVANMVSARTG--GGSFST 422
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ + +++ + + LG GDK DY + ++ + + N Y+ACP DCNKKV+D+ N YRC
Sbjct: 423 DWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQENAFYRACPQADCNKKVVDEGNDQYRC 482
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
E+CN + F YRL++ + +GDWT++ WVT F E +L T+QE+GE+ E+ P +
Sbjct: 483 ERCNALYPNFKYRLLVNMSVGDWTSNRWVTCFNETGEQLLKHTSQEIGEALENDPTKAEE 542
Query: 304 L-----FTQYIFRLRAKLEHY 319
+ FT +IF+LR K E Y
Sbjct: 543 IFSALNFTSHIFKLRCKNEVY 563
>gi|328788416|ref|XP_003251128.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit isoform
2 [Apis mellifera]
Length = 590
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 208/517 (40%), Positives = 310/517 (59%), Gaps = 65/517 (12%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG +NSF MLATQLN +IT+ L+EF+I QI RY +S V++ R V++IL +++
Sbjct: 44 VSDGKRVNSFTMLATQLNSMITENILTEFSICQINRYAISMVNNAGKQKR-VMVILNIDL 102
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHP 444
PG E+G KIGNP + D+ Q + TN HN +Q+S + T P
Sbjct: 103 KVPGDEVGHKIGNPTNAEADGDSKPQAQIAQSAQTNLKPN-HN----MQQSSTNNISTTP 157
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
IV+LSPYQN+W IKARV +K+ IR W+N+RG GKLFS+DL+DESGEIR T F +EC++F+
Sbjct: 158 IVALSPYQNRWVIKARVVSKSNIRTWSNSRGEGKLFSMDLIDESGEIRCTAFRNECDKFY 217
Query: 505 DMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP 564
DM+E KVYYIS TLKPANK+F+++ NDYEM+ + +IPC+ D ++PS+++ FV
Sbjct: 218 DMLEIGKVYYISRATLKPANKQFNNLKNDYEMTLIGDSEIIPCH-DSGDDIPSLQFDFVS 276
Query: 565 LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE 624
+ I + ++ +++LG+ + +L +T + + + KRD++LVD+S V ++LWG +
Sbjct: 277 INDINKKEQNDIMNILGIVKYSGDLQILTSRNSGRELRKRDVSLVDESNTMVKVSLWGSQ 336
Query: 625 AETFDASNKPVIAVKAARVSEFQG--NL-------------------------------- 650
AE FD S+ PV+AVK AR++EF G NL
Sbjct: 337 AEEFDGSSNPVLAVKGARITEFNGGKNLSTLSSTVLQIDPDLPAAHRLRGWFNTMGRNEE 396
Query: 651 ------------------LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQ 692
+ +E +D +LG + +D +V+ + + R N YKACPS+
Sbjct: 397 ATSLSKPFGSTTGVSELWITFQEAKDMELGYKN-SDIYTVKATLNMIRMENAIYKACPSE 455
Query: 693 DCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA 752
+C KK++DQ N MYRCEKC+KE+ + YRL+ + + DWT++ WVT F +EAE IL TA
Sbjct: 456 NCKKKLVDQANDMYRCEKCDKEYPNYRYRLLANISLADWTDNQWVTAFNDEAEKILSSTA 515
Query: 753 QEVGESTEDH-----PALKKALFTQYIFRLRAKLEHY 784
QE+GE E+ +A F +IF++R K+E +
Sbjct: 516 QELGELKENDIDAYSEKFSEATFKSFIFKIRVKVEVF 552
Score = 266 bits (680), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 204/326 (62%), Gaps = 7/326 (2%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK+F+++ NDYEM+ + +IPC+ D ++PS+++ FV + I + ++ +++LG
Sbjct: 235 PANKQFNNLKNDYEMTLIGDSEIIPCH-DSGDDIPSLQFDFVSINDINKKEQNDIMNILG 293
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+ + +L +T + + + KRD++LVD+S V ++LWG +AE FD S+ PV+AVK A
Sbjct: 294 IVKYSGDLQILTSRNSGRELRKRDVSLVDESNTMVKVSLWGSQAEEFDGSSNPVLAVKGA 353
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGN 184
R++EF GGK LS S+VL ++PD+P H+L+GWF+T + G G +
Sbjct: 354 RITEFNGGKNLSTLSSTVLQIDPDLPAAHRLRGWFNTMGRNEEATSLSKPFGSTTGVSEL 413
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ +E +D +LG + +D +V+ + + R N YKACPS++C KK++DQ N MYRCE
Sbjct: 414 WITFQEAKDMELGYKN-SDIYTVKATLNMIRMENAIYKACPSENCKKKLVDQANDMYRCE 472
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PA 299
KC+KE+ + YRL+ + + DWT++ WVT F +EAE IL TAQE+GE E+
Sbjct: 473 KCDKEYPNYRYRLLANISLADWTDNQWVTAFNDEAEKILSSTAQELGELKENDIDAYSEK 532
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+A F +IF++R K+E + ++
Sbjct: 533 FSEATFKSFIFKIRVKVEVFGDENRL 558
>gi|307192559|gb|EFN75747.1| Replication protein A 70 kDa DNA-binding subunit [Harpegnathos
saltator]
Length = 597
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 213/519 (41%), Positives = 304/519 (58%), Gaps = 63/519 (12%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+ NSF MLATQLN +I+D TLSE+T+ +I +Y +S V++ S + V+IIL++ +
Sbjct: 43 VSDGLRTNSFTMLATQLNHLISDNTLSEYTVCEISKYALSSVNN-SGKEKRVIIILDVEV 101
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHP 444
I G +G KIGNP +NT+ T + + + NG S+ + T P
Sbjct: 102 IASGEMVGRKIGNP--VNTSRSEPETSKPNISAAAHQQNGSATKKNNSSNQSSSDISTTP 159
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
I +LSPYQNKW IK RV K+ IR W+N+RG GKLF+++L+DESGEIR T FN+ C++F+
Sbjct: 160 IAALSPYQNKWVIKVRVLTKSQIRTWSNSRGDGKLFNMELVDESGEIRCTAFNNACDKFY 219
Query: 505 DMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP 564
DMIE VYYIS C LKPANK+F+++ ND+EMS T+ T V+PC+ D ++P++++ F P
Sbjct: 220 DMIEAGNVYYISRCQLKPANKQFNTMKNDFEMSMTNDTEVVPCH-DNSEDIPTLQFNFSP 278
Query: 565 LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE 624
+ + + D+ IDVLGV EL ++ + K ++KRDI +VD S +V +TLWGK+
Sbjct: 279 ISQLENMKKDDMIDVLGVVTTFGELQNIVSQKTGKEHVKRDINIVDDSSVTVCVTLWGKQ 338
Query: 625 AETFDASNKPVIAVKAARVSEFQGN----------------------------------- 649
AE FDASN P++A+K+ARV EF G
Sbjct: 339 AEDFDASNNPIVAIKSARVGEFNGGKNLSIGGMAIIEKDPDLPEAHRLRGWYSAGGHLEN 398
Query: 650 ------------------LLLMREIQDQQLGMG-DKADYCSVRGIIQVFRGSNTTYKACP 690
L +E D +LG D AD SV I + R N+ YKACP
Sbjct: 399 VKSLSKAGGAGGGDMNAPLYTFQEATDAKLGEKMDAADVFSVTATINIIRVENSIYKACP 458
Query: 691 SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGV 750
+ C KK++DQ+ G++RCEKCNK++ F YRL+ + I D T S W+T F EAE ILG+
Sbjct: 459 LESCKKKLVDQSTGVFRCEKCNKDYPNFLYRLLASMNIADATGSRWITAFNEEAEKILGM 518
Query: 751 TAQEVGESTE-DHPALKK----ALFTQYIFRLRAKLEHY 784
+AQE+GE E D+ A + A F ++ F +R K E +
Sbjct: 519 SAQELGELKENDNDAYMQKFGDASFKRFTFGVRVKSEVF 557
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 138/322 (42%), Positives = 204/322 (63%), Gaps = 8/322 (2%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK+F+++ ND+EMS T+ T V+PC+ D ++P++++ F P+ + + D+ IDVLG
Sbjct: 237 PANKQFNTMKNDFEMSMTNDTEVVPCH-DNSEDIPTLQFNFSPISQLENMKKDDMIDVLG 295
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V EL ++ + K ++KRDI +VD S +V +TLWGK+AE FDASN P++A+K+A
Sbjct: 296 VVTTFGELQNIVSQKTGKEHVKRDINIVDDSSVTVCVTLWGKQAEDFDASNNPIVAIKSA 355
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAA-G 183
RV EF GGK LS+ +++ +PD+PE H+L+GW+S + + GG GGG
Sbjct: 356 RVGEFNGGKNLSIGGMAIIEKDPDLPEAHRLRGWYSAGGHLENVKSLSKAGGAGGGDMNA 415
Query: 184 NLLLMREIQDQQLGMG-DKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
L +E D +LG D AD SV I + R N+ YKACP + C KK++DQ+ G++R
Sbjct: 416 PLYTFQEATDAKLGEKMDAADVFSVTATINIIRVENSIYKACPLESCKKKLVDQSTGVFR 475
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPALK 301
CEKCNK++ F YRL+ + I D T S W+T F EAE ILG++AQE+GE E D+ A
Sbjct: 476 CEKCNKDYPNFLYRLLASMNIADATGSRWITAFNEEAEKILGMSAQELGELKENDNDAYM 535
Query: 302 K----ALFTQYIFRLRAKLEHY 319
+ A F ++ F +R K E +
Sbjct: 536 QKFGDASFKRFTFGVRVKSEVF 557
>gi|346471207|gb|AEO35448.1| hypothetical protein [Amblyomma maculatum]
Length = 604
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 215/531 (40%), Positives = 315/531 (59%), Gaps = 75/531 (14%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGV +++AML TQLN +IT+ + +F +VQ+ +Y+ + VS ++ VLI+L+L +
Sbjct: 44 LSDGVQCHTYAMLGTQLNGMITNNEIDKFAVVQLDKYMCNVVSP----DKKVLIVLDLTV 99
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNG--SNGVHN-NVAIPR--QASAPV 439
I G+ +G ++GNP N+ S N NG H+ + ++P +A+ P
Sbjct: 100 IAKGSAVGCRLGNPVIPNSTGGAPSAGSADVGANKTQFQQNGGHDQSSSMPSYGRAAYPA 159
Query: 440 ----VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATM 495
V PI SL+PYQN+WTI+ARVTNK+ IR W+N++G GKLFS+DLLDESGEIRAT
Sbjct: 160 STNDVVVVPIASLTPYQNRWTIRARVTNKSGIRTWSNSKGEGKLFSMDLLDESGEIRATA 219
Query: 496 FNDECNRFHDMIEKDKVYYISNCTLK--PANKKFSSINNDYEMSFTHSTTVIPCNEDEVG 553
FN EC+R +D++E +KVYYIS +K A FSSI ND+EMSF TT+ PC +D V
Sbjct: 220 FNAECDRLYDIVEVNKVYYISRAVIKNIRAGYSFSSIKNDFEMSFIPETTITPC-DDVVP 278
Query: 554 NMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ 613
N+P++++ FVP+ + E+S D IDV+G+C A ++++VT + + KRD++LVD+S
Sbjct: 279 NIPTLQFNFVPISRLQEVSKDSVIDVIGICKTAGDVTTVTRRNTNQELKKRDVSLVDRSG 338
Query: 614 ASVTMTLWGKEAETFDASNKPVIAVKAARVSEF--------------------------- 646
V++T+WG +AE FD S+ PV+AVK ARVS+F
Sbjct: 339 TEVSLTMWGDQAEKFDGSDNPVVAVKGARVSDFSGVSLSLISSSMLQVNPDIPESHALLG 398
Query: 647 ----QGNLLLMREI--------------------QDQQLGMGDKADYCSVRGIIQVFRGS 682
+G LL R + + + LG GDK DY SV+ + + R
Sbjct: 399 WYTKEGALLQTRSLSTRAGGAMGGNANWKTLAQAKAENLGQGDKPDYYSVKACVSIIRKE 458
Query: 683 NTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQN 742
N YKACPS++CNKKV+D NG YRCEKC +E F +RL++ + D+++ WVT F
Sbjct: 459 NCLYKACPSENCNKKVVDLENGYYRCEKCARETMDFKWRLLVSANLTDFSDGQWVTCFGK 518
Query: 743 EAESILGVTAQEVGE-----STED---HPALKKALFTQYIFRLRAKLEHYN 785
EAE ++G +A+++GE S ED L + F +IFRLR K+E +N
Sbjct: 519 EAEQLIGASAEDLGEMYSKSSKEDSRYEDILNEVPFKPFIFRLRTKMEVFN 569
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 145/333 (43%), Positives = 212/333 (63%), Gaps = 12/333 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A FSSI ND+EMSF TT+ PC +D V N+P++++ FVP+ + E+S D IDV+G+
Sbjct: 249 AGYSFSSIKNDFEMSFIPETTITPC-DDVVPNIPTLQFNFVPISRLQEVSKDSVIDVIGI 307
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C A ++++VT + + KRD++LVD+S V++T+WG +AE FD S+ PV+AVK AR
Sbjct: 308 CKTAGDVTTVTRRNTNQELKKRDVSLVDRSGTEVSLTMWGDQAEKFDGSDNPVVAVKGAR 367
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGMGGGAAGN 184
VS+F G +LSL SS+L +NPDIPE H L GW++ + + +S R GG GG A N
Sbjct: 368 VSDFSG-VSLSLISSSMLQVNPDIPESHALLGWYTKEGALLQTRSLSTRAGGAMGGNA-N 425
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ + + + LG GDK DY SV+ + + R N YKACPS++CNKKV+D NG YRCE
Sbjct: 426 WKTLAQAKAENLGQGDKPDYYSVKACVSIIRKENCLYKACPSENCNKKVVDLENGYYRCE 485
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-----STED--- 296
KC +E F +RL++ + D+++ WVT F EAE ++G +A+++GE S ED
Sbjct: 486 KCARETMDFKWRLLVSANLTDFSDGQWVTCFGKEAEQLIGASAEDLGEMYSKSSKEDSRY 545
Query: 297 HPALKKALFTQYIFRLRAKLEHYNGTKKIPDGV 329
L + F +IFRLR K+E +N ++ V
Sbjct: 546 EDILNEVPFKPFIFRLRTKMEVFNDESRLKTSV 578
>gi|195444358|ref|XP_002069830.1| GK11360 [Drosophila willistoni]
gi|194165915|gb|EDW80816.1| GK11360 [Drosophila willistoni]
Length = 605
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 216/546 (39%), Positives = 308/546 (56%), Gaps = 76/546 (13%)
Query: 309 IFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSS 368
I R+ + +E I DG+ NS+AMLA+QLN + G L EFTIV++ +Y+ S V
Sbjct: 27 IKRINSNVESERYRILISDGMYFNSYAMLASQLNHLHQAGDLEEFTIVRLDKYMTSLVGK 86
Query: 369 GSATNRSVLIILELNIIKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATN---------- 418
R VLII EL+++K G+E KIG P +N+ PAA +
Sbjct: 87 EGVGKR-VLIINELSVLKSGSEQKSKIGEP----VTYENAKKTPAPAAPSIPTKKEPLFG 141
Query: 419 ----TNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNAR 474
+ +N +NN ++ THPI SLSPYQNKW IKARVT KT IR W+N R
Sbjct: 142 NINSSKNNNNNNNNNNNTMNSTLNAGLTHPIASLSPYQNKWVIKARVTAKTAIRTWSNPR 201
Query: 475 GSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDY 534
G GKLFS+DL+DESGEIRAT F ++C++F+D+I+ D VYY S C LKPANK++S + NDY
Sbjct: 202 GEGKLFSMDLMDESGEIRATAFKEQCDKFYDLIQVDGVYYFSKCQLKPANKQYSQLKNDY 261
Query: 535 EMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTG 594
EM+FT T V C EDE ++P +KY VP+ ++ + +D +G+C + EL + T
Sbjct: 262 EMTFTGETMVQMC-EDEEDSIPEIKYDLVPISQVSNMENKAAVDTIGICKEVGELQTFTS 320
Query: 595 KTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSE--------- 645
+T K + KRD+TLVD S +++++TLWG +A FD +PVI VK R++E
Sbjct: 321 RTTNKEFKKRDLTLVDMSNSAISLTLWGDDAVNFDGHVQPVILVKGTRINEFNGGKSLSL 380
Query: 646 ------------------------------------------FQGNLLLMREIQDQQLGM 663
F + L +++ +++ LG
Sbjct: 381 GGGSIMKINPDIPEAHKLRGWFDNGGGDNIANMVSARTGGGTFSADWLTLKDARERNLGS 440
Query: 664 GDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLI 723
GDK DY + ++ + + N YKACP +CNKKV+D+ N YRCE+CN++F F YRL+
Sbjct: 441 GDKPDYFQCKAVVHIVKQENAFYKACPQAECNKKVVDEGNDRYRCERCNQDFPNFKYRLL 500
Query: 724 LPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKAL-----FTQYIFRLR 778
+ + IGDWT++ WVT F E +L TAQEVGE+ E+ P + + F+ +IF+LR
Sbjct: 501 INLSIGDWTSNRWVTCFSEIGEQLLKHTAQEVGEALENDPPKAEQMFSGMNFSAHIFKLR 560
Query: 779 AKLEHY 784
K E Y
Sbjct: 561 CKNEVY 566
Score = 282 bits (721), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 140/321 (43%), Positives = 205/321 (63%), Gaps = 9/321 (2%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK++S + NDYEM+FT T V C EDE ++P +KY VP+ ++ + +D +G
Sbjct: 249 PANKQYSQLKNDYEMTFTGETMVQMC-EDEEDSIPEIKYDLVPISQVSNMENKAAVDTIG 307
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+C + EL + T +T K + KRD+TLVD S +++++TLWG +A FD +PVI VK
Sbjct: 308 ICKEVGELQTFTSRTTNKEFKKRDLTLVDMSNSAISLTLWGDDAVNFDGHVQPVILVKGT 367
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRF-EPVSQRTGGMGGGAAG 183
R++EF GGK+LSL S++ +NPDIPE HKL+GWF VS RTG GG +
Sbjct: 368 RINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWFDNGGGDNIANMVSARTG--GGTFSA 425
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ L +++ +++ LG GDK DY + ++ + + N YKACP +CNKKV+D+ N YRC
Sbjct: 426 DWLTLKDARERNLGSGDKPDYFQCKAVVHIVKQENAFYKACPQAECNKKVVDEGNDRYRC 485
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
E+CN++F F YRL++ + IGDWT++ WVT F E +L TAQEVGE+ E+ P +
Sbjct: 486 ERCNQDFPNFKYRLLINLSIGDWTSNRWVTCFSEIGEQLLKHTAQEVGEALENDPPKAEQ 545
Query: 304 L-----FTQYIFRLRAKLEHY 319
+ F+ +IF+LR K E Y
Sbjct: 546 MFSGMNFSAHIFKLRCKNEVY 566
>gi|443719869|gb|ELU09821.1| hypothetical protein CAPTEDRAFT_172916 [Capitella teleta]
Length = 608
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 207/537 (38%), Positives = 312/537 (58%), Gaps = 81/537 (15%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGV +S AMLATQLND +T+G L +++++ +Y+ + ++ NR V+I+LE+ +
Sbjct: 45 LSDGVCSHSSAMLATQLNDKVTNGELEPNSVIKLDKYLCNTING----NRRVMILLEITV 100
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGS----------NGVHNNVAI-PR 433
I G ++G ++GNP P + + P A S N +NN + P
Sbjct: 101 IAKGAQVGSRLGNPTPYKLGESKEAKVEQPVAKPVQNSISNNQQNKPQNSFYNNSSSKPF 160
Query: 434 QASAPV--------VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL 485
A+ P V+ HPI SL+PYQN+WTIK RVT+K+ IR W+N+RG GKLFS+ +
Sbjct: 161 VAAQPSINGPGDSPVRVHPISSLNPYQNRWTIKVRVTSKSQIRTWSNSRGEGKLFSMTFM 220
Query: 486 DESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVI 545
D+SGEI+AT F D+ ++F+DMIE +KV+++ TLK A+K++++ +NDYEM+F + T +I
Sbjct: 221 DDSGEIKATAFKDQVDKFYDMIEMNKVFFVKKGTLKTADKRYNTTDNDYEMTFNNDTEII 280
Query: 546 PCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRD 605
PC++D ++P++ + FV + + + P+ N+DVLGV AE+S++T K K KR+
Sbjct: 281 PCDDDT--SLPTINFNFVEIGNLQSVEPNSNVDVLGVVKSVAEVSTITTKQTNKELKKRE 338
Query: 606 ITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG---------NLLLMREI 656
+ LVD+ Q V +TLWG EAE F++ N PV+A K RVS+F G L+L +I
Sbjct: 339 LELVDRGQVLVRLTLWGLEAENFNSMNNPVVAAKNVRVSDFGGRSLSCGSSSQLVLNPDI 398
Query: 657 ------------------------------------------QDQQLGMGDKADYCSVRG 674
+ Q LG G+K DY + +G
Sbjct: 399 PQAHQLRGWYDSEGRNADFNAYSSEAAGSGSHSTNWKSFGDVKSQNLGTGEKGDYFTAKG 458
Query: 675 IIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNS 734
I R N Y ACP DCNKKV+DQ NG YRCEKC KEF F +R+IL + D++++
Sbjct: 459 TIVYLRKENCMYMACPQADCNKKVVDQANGYYRCEKCQKEFPNFKWRMILSANVADFSDN 518
Query: 735 VWVTLFQNEAESILGVTAQEVGE-STEDHPALKK----ALFTQYIFRLRAKLEHYNK 786
WVT FQ AE++LG++A E+G+ +E+ A K ++F Y+ LRAK+E YN+
Sbjct: 519 QWVTCFQESAENVLGISADELGKLRSENEAAFDKVFDESVFKSYVMTLRAKMETYNE 575
Score = 288 bits (737), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 139/321 (43%), Positives = 206/321 (64%), Gaps = 10/321 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A+K++++ +NDYEM+F + T +IPC++D ++P++ + FV + + + P+ N+DVLGV
Sbjct: 258 ADKRYNTTDNDYEMTFNNDTEIIPCDDDT--SLPTINFNFVEIGNLQSVEPNSNVDVLGV 315
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
AE+S++T K K KR++ LVD+ Q V +TLWG EAE F++ N PV+A K R
Sbjct: 316 VKSVAEVSTITTKQTNKELKKRELELVDRGQVLVRLTLWGLEAENFNSMNNPVVAAKNVR 375
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAGN 184
VS+F GG++LS SS L LNPDIP+ H+L+GW+ ++ N F S G G + N
Sbjct: 376 VSDF-GGRSLSCGSSSQLVLNPDIPQAHQLRGWYDSEGRNADFNAYSSEAAG-SGSHSTN 433
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+++ Q LG G+K DY + +G I R N Y ACP DCNKKV+DQ NG YRCE
Sbjct: 434 WKSFGDVKSQNLGTGEKGDYFTAKGTIVYLRKENCMYMACPQADCNKKVVDQANGYYRCE 493
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-STEDHPALKK- 302
KC KEF F +R+IL + D++++ WVT FQ AE++LG++A E+G+ +E+ A K
Sbjct: 494 KCQKEFPNFKWRMILSANVADFSDNQWVTCFQESAENVLGISADELGKLRSENEAAFDKV 553
Query: 303 ---ALFTQYIFRLRAKLEHYN 320
++F Y+ LRAK+E YN
Sbjct: 554 FDESVFKSYVMTLRAKMETYN 574
>gi|195037625|ref|XP_001990261.1| GH19242 [Drosophila grimshawi]
gi|193894457|gb|EDV93323.1| GH19242 [Drosophila grimshawi]
Length = 602
Score = 394 bits (1012), Expect = e-106, Method: Compositional matrix adjust.
Identities = 201/526 (38%), Positives = 295/526 (56%), Gaps = 67/526 (12%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG NS+AMLA+QLN++ G L+E TIV++ +Y+ S V + + VLI+ EL +
Sbjct: 39 MSDGKYYNSYAMLASQLNEMQHKGLLTENTIVRLDKYMTSMVGK-EGSGKRVLIVTELTV 97
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQ--- 441
+K G E+ K+G P + + A + + + +
Sbjct: 98 LKSGEEVKTKLGEPVTYENAAKPEAAPKAAPAAASAPVKKDQSYNYNNNNNNNTMNSTMN 157
Query: 442 -------THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRAT 494
THPI SLSPYQNKW IKARVT+KT IR W+NARG GKLFS+DL+DESGEIRAT
Sbjct: 158 GTLNSSLTHPIASLSPYQNKWVIKARVTSKTAIRTWSNARGEGKLFSMDLMDESGEIRAT 217
Query: 495 MFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN 554
F ++C++F+D+IE D VY+ S C LKPANK++S + NDYEM+FT T V C++ + G
Sbjct: 218 AFKEQCDKFYDLIEVDNVYFFSKCQLKPANKQYSQLKNDYEMTFTGETMVQLCDDADDGG 277
Query: 555 MPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA 614
+P +K+ VP+ +A + +D +G+C D E+ + T +T K + KR++TLVD S A
Sbjct: 278 IPEIKFDLVPISQVASMENKAAVDTIGICKDVGEVQTFTSRTTNKEFKKRELTLVDMSNA 337
Query: 615 SVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG-------------------------- 648
++ +TLWG EA FD +PVI VK +R++EF G
Sbjct: 338 AINLTLWGDEAVNFDGHVQPVILVKGSRINEFNGGKSLSMGGGSILKINPDIPEAHKLRG 397
Query: 649 -------------------------NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSN 683
+ + +++ + + LG GDK DY + ++ + + N
Sbjct: 398 WFDNGGGDNISNLVSARTGGGSFSTDWVTLKDARIRNLGSGDKPDYFQCKAVVHIVKQEN 457
Query: 684 TTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNE 743
YK+CP +CNKKV+D+ NG YRCE+CN + F YRL++ + IGDWT++ WVT F
Sbjct: 458 AFYKSCPQTECNKKVVDEGNGQYRCERCNAAYPNFKYRLLINMSIGDWTSNRWVTCFNEA 517
Query: 744 AESILGVTAQEVGESTEDHPALKKAL-----FTQYIFRLRAKLEHY 784
E +L TAQEVGE+ E+ P + + F+ +IF+LR K E Y
Sbjct: 518 GEQLLKHTAQEVGEALENDPTSAEKMFGDINFSSFIFKLRCKNEMY 563
Score = 299 bits (765), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 137/321 (42%), Positives = 203/321 (63%), Gaps = 8/321 (2%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK++S + NDYEM+FT T V C++ + G +P +K+ VP+ +A + +D +G
Sbjct: 245 PANKQYSQLKNDYEMTFTGETMVQLCDDADDGGIPEIKFDLVPISQVASMENKAAVDTIG 304
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+C D E+ + T +T K + KR++TLVD S A++ +TLWG EA FD +PVI VK +
Sbjct: 305 ICKDVGEVQTFTSRTTNKEFKKRELTLVDMSNAAINLTLWGDEAVNFDGHVQPVILVKGS 364
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEP-VSQRTGGMGGGAAG 183
R++EF GGK+LS+ S+L +NPDIPE HKL+GWF VS RTG GG +
Sbjct: 365 RINEFNGGKSLSMGGGSILKINPDIPEAHKLRGWFDNGGGDNISNLVSARTG--GGSFST 422
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ + +++ + + LG GDK DY + ++ + + N YK+CP +CNKKV+D+ NG YRC
Sbjct: 423 DWVTLKDARIRNLGSGDKPDYFQCKAVVHIVKQENAFYKSCPQTECNKKVVDEGNGQYRC 482
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
E+CN + F YRL++ + IGDWT++ WVT F E +L TAQEVGE+ E+ P +
Sbjct: 483 ERCNAAYPNFKYRLLINMSIGDWTSNRWVTCFNEAGEQLLKHTAQEVGEALENDPTSAEK 542
Query: 304 L-----FTQYIFRLRAKLEHY 319
+ F+ +IF+LR K E Y
Sbjct: 543 MFGDINFSSFIFKLRCKNEMY 563
>gi|149637674|ref|XP_001507100.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit
[Ornithorhynchus anatinus]
Length = 619
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 219/547 (40%), Positives = 302/547 (55%), Gaps = 95/547 (17%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ + LS I QI R+IV+ + G R V+I+++L +
Sbjct: 46 MSDGLNTLSSFMLATQLNSLVEEERLSTNCICQINRFIVNSLKEG----RKVIILMDLEV 101
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAAT---------NTNGSNGV---------- 425
+K E+G KIGNP P N T P T NGS+G+
Sbjct: 102 LKLAEEVGGKIGNPVPYNEGAGQQQTTPAPGPTAIPPASKPQQQNGSSGLGSAGTKSYGP 161
Query: 426 ---------HNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGS 476
N + P + + VV PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG
Sbjct: 162 AKSFAKTGSSNLLNTPGGSHSKVV---PIASLTPYQSKWTICARVTNKSQIRTWSNSRGE 218
Query: 477 GKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEM 536
GKLFSI+L+DESGEIRAT FND+ ++F +IE +KVYY S +LK ANK+F+++ NDYEM
Sbjct: 219 GKLFSIELVDESGEIRATAFNDQADKFFPLIEVNKVYYFSKGSLKIANKQFTAVKNDYEM 278
Query: 537 SFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKT 596
+F + T+V+PC ++ ++P+V++ F + + S D +D++G+C E + +T K+
Sbjct: 279 TFNNETSVVPC--EDAHHLPTVQFDFTGIGDLENKSKDSLVDIIGICKSYEEANKITVKS 336
Query: 597 NQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG-------- 648
N + KR+I L+D S VT TLWG +AE FD S +PV+A+K ARVS+F G
Sbjct: 337 NNREVSKRNIHLMDMSGKLVTATLWGDDAEKFDGSRQPVMAIKGARVSDFGGRSLSVLSS 396
Query: 649 ---------------------------------------------NLLLMREIQDQQLGM 663
N + E++ + LG
Sbjct: 397 STVIMNPDIPEAFKLRGWFDSEGKGLDCISISDLRSGGGGGGSSTNWKTLYEVKAENLGH 456
Query: 664 GDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLI 723
GDKA+Y S G + R N Y+ACPSQDCNKKVIDQ NG+YRCEKC+ EF F YR+I
Sbjct: 457 GDKAEYFSCVGTVVYLRKENCMYQACPSQDCNKKVIDQQNGLYRCEKCDCEFPNFKYRMI 516
Query: 724 LPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLR 778
L I D+ + WVT FQ AE+ILG +GE E + + A F Y+FR+R
Sbjct: 517 LSANIADFQENQWVTCFQESAEAILGQNTMFLGELKEKNEQAFEEVFQNANFRSYVFRIR 576
Query: 779 AKLEHYN 785
KLE YN
Sbjct: 577 VKLETYN 583
Score = 268 bits (685), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 147/332 (44%), Positives = 211/332 (63%), Gaps = 12/332 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC ++ ++P+V++ F + + S D +D++G+
Sbjct: 265 ANKQFTAVKNDYEMTFNNETSVVPC--EDAHHLPTVQFDFTGIGDLENKSKDSLVDIIGI 322
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C E + +T K+N + KR+I L+D S VT TLWG +AE FD S +PV+A+K AR
Sbjct: 323 CKSYEEANKITVKSNNREVSKRNIHLMDMSGKLVTATLWGDDAEKFDGSRQPVMAIKGAR 382
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + +NPDIPE KL+GWF ++ + +S R+GG GGG++
Sbjct: 383 VSDF-GGRSLSVLSSSTVIMNPDIPEAFKLRGWFDSEGKG-LDCISISDLRSGGGGGGSS 440
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E++ + LG GDKA+Y S G + R N Y+ACPSQDCNKKVIDQ NG+YR
Sbjct: 441 TNWKTLYEVKAENLGHGDKAEYFSCVGTVVYLRKENCMYQACPSQDCNKKVIDQQNGLYR 500
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC+ EF F YR+IL I D+ + WVT FQ AE+ILG +GE E +
Sbjct: 501 CEKCDCEFPNFKYRMILSANIADFQENQWVTCFQESAEAILGQNTMFLGELKEKNEQAFE 560
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKIPDGV 329
+ A F Y+FR+R KLE YN +I V
Sbjct: 561 EVFQNANFRSYVFRIRVKLETYNDESRIKASV 592
>gi|395853270|ref|XP_003799138.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit
[Otolemur garnettii]
Length = 616
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 213/543 (39%), Positives = 304/543 (55%), Gaps = 88/543 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ LS I QI R+IV+ + G R V+I++EL +
Sbjct: 46 MSDGLNTLSSFMLATQLNPLVEQQRLSSNCICQINRFIVNTLKDG----RRVVILMELEV 101
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNT---------NGSNGVHNNVA----- 430
+K +G KIGNP P N +PA T + NGS G+ + V+
Sbjct: 102 LKSAEAVGLKIGNPVPYNEGHGQQQVVPSPATTASPSTSRPQPQNGSLGMGSAVSKSFGA 161
Query: 431 -----------IPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
+P + + PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKL
Sbjct: 162 SKTFGKPGGMSLPNTSGGTQAKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKL 221
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FS++L+D+SGEIRAT FND+ ++F +IE +KVYY + TLK ANK+FS++ NDYEM+F+
Sbjct: 222 FSVELVDQSGEIRATAFNDQVDKFFPLIEVNKVYYFTKGTLKIANKQFSAVKNDYEMTFS 281
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
+ T+V+PC +D ++P+V++ F + + D +D++GVC + + + +T K+ +
Sbjct: 282 NDTSVMPCEDDH--HLPTVQFDFTGIGDLENKPKDSLVDIIGVCKNYEDATKITVKSTNR 339
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL-------- 651
KR+I L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G L
Sbjct: 340 EVAKRNIYLMDTSGKVVTTTLWGEDADKFDGSRQPVMAIKGARVSDFGGRSLSVLSSSTI 399
Query: 652 --------------------------------------------LMREIQDQQLGMGDKA 667
+ E++ + LG GDKA
Sbjct: 400 IVNPDIPEAYKLRGWFDSEGQALDGVSISDLKSGGVGGSNTNWKTLNEVKSENLGQGDKA 459
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
DY S + R N+ Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF F YR+IL V
Sbjct: 460 DYFSSVATVVYLRKENSMYQACPTQDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVN 519
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLE 782
I D+ ++ WVT FQ AE+ILG +GE E + + A F + FR+R KLE
Sbjct: 520 IADFQDNQWVTCFQESAEAILGQNTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLE 579
Query: 783 HYN 785
+YN
Sbjct: 580 NYN 582
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 143/328 (43%), Positives = 212/328 (64%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+FS++ NDYEM+F++ T+V+PC +D ++P+V++ F + + D +D++GV
Sbjct: 265 ANKQFSAVKNDYEMTFSNDTSVMPCEDDH--HLPTVQFDFTGIGDLENKPKDSLVDIIGV 322
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + + +T K+ + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 323 CKNYEDATKITVKSTNREVAKRNIYLMDTSGKVVTTTLWGEDADKFDGSRQPVMAIKGAR 382
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + +NPDIPE +KL+GWF ++ + VS ++GG+GG
Sbjct: 383 VSDF-GGRSLSVLSSSTIIVNPDIPEAYKLRGWFDSEGQA-LDGVSISDLKSGGVGGSNT 440
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E++ + LG GDKADY S + R N+ Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 441 -NWKTLNEVKSENLGQGDKADYFSSVATVVYLRKENSMYQACPTQDCNKKVIDQQNGLYR 499
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC+ EF F YR+IL V I D+ ++ WVT FQ AE+ILG +GE E +
Sbjct: 500 CEKCDSEFPNFKYRMILSVNIADFQDNQWVTCFQESAEAILGQNTAYLGELKEKNEQAFE 559
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F + FR+R KLE+YN +I
Sbjct: 560 EVFQNANFRSFTFRIRVKLENYNDESRI 587
>gi|156369841|ref|XP_001628182.1| predicted protein [Nematostella vectensis]
gi|156215152|gb|EDO36119.1| predicted protein [Nematostella vectensis]
Length = 626
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 216/550 (39%), Positives = 319/550 (58%), Gaps = 97/550 (17%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGV I++ AMLATQLND +TDG + +V++ +YI + + R VLI+LEL
Sbjct: 53 LSDGVLIHTSAMLATQLNDKVTDGEIEVKAVVRLDKYICNIIQE----TRKVLILLELTT 108
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQ----TPAATNTNG-SNGVHNNVAIPRQ----- 434
+K +E+ KIGNP+ N +N+ QQ PA N G S G NN RQ
Sbjct: 109 VKRASEVPGKIGNPR--NAADNNAGGQQNGNAAPAPKNVGGGSFGGQNNPPAQRQQAQTF 166
Query: 435 ------------ASAPVVQ-------THPIVSLSPYQNKWTIKARVTNKTPIREWNNARG 475
++ PV + PI L+PYQN+WTI+AR+T+K+ IR WNN+RG
Sbjct: 167 GSKGFGGGSSYKSNQPVNRGGDGAKTVFPISGLTPYQNRWTIRARITSKSNIRTWNNSRG 226
Query: 476 SGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYE 535
G+LF+++++DESGEIRAT FN+ ++F+ M+E DKV+YI+ +L+ ANK++SSI NDYE
Sbjct: 227 EGRLFNVEMVDESGEIRATGFNEAVDKFYQMLEVDKVFYITKGSLRTANKQYSSIRNDYE 286
Query: 536 MSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGK 595
M + T + PCN E N+P+++Y FV + + I+ D+ +D+LGV + +L+ +T K
Sbjct: 287 MYLNNDTIIEPCN--ETCNLPTLQYNFVNIGDLENINKDQIVDILGVVTNVGDLAQITTK 344
Query: 596 TNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD--ASNKPVIAVKAARVSEFQGN---- 649
T K KRDITL+D+S+ SVT TLWG EAE F+ A PV+A++ A+VS+F G
Sbjct: 345 TTNKQVSKRDITLLDRSEKSVTATLWGDEAEKFEEHAGKNPVLAIRGAKVSDFGGRSLSV 404
Query: 650 -----------------------------------------------LLLMREIQDQQLG 662
L + +I+++QLG
Sbjct: 405 LNSSNMRVNPVDMKEAQVLRGWYDNTGKNNEVASISGQRYSAGGGGPLKFLSQIKNEQLG 464
Query: 663 MGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRL 722
MG+KADY SV+G+ FR N YKACPS++CNKKVI++++G Y CEKC +++ + YRL
Sbjct: 465 MGEKADYISVKGVCVYFRRENCMYKACPSEECNKKVIEEDSGFY-CEKCGRKYPNYKYRL 523
Query: 723 ILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH------PALKKALFTQYIFR 776
IL + D+T S WVT FQ AE++LG +A ++G+ E+ + F + F+
Sbjct: 524 ILSAHLADFTGSQWVTCFQESAEALLGRSASDLGQMKENQDEAQFDQVFASSEFKLHTFK 583
Query: 777 LRAKLEHYNK 786
+RAK+E YN+
Sbjct: 584 IRAKMETYNE 593
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 142/325 (43%), Positives = 212/325 (65%), Gaps = 16/325 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK++SSI NDYEM + T + PCNE N+P+++Y FV + + I+ D+ +D+LGV
Sbjct: 274 ANKQYSSIRNDYEMYLNNDTIIEPCNE--TCNLPTLQYNFVNIGDLENINKDQIVDILGV 331
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD--ASNKPVIAVKA 123
+ +L+ +T KT K KRDITL+D+S+ SVT TLWG EAE F+ A PV+A++
Sbjct: 332 VTNVGDLAQITTKTTNKQVSKRDITLLDRSEKSVTATLWGDEAEKFEEHAGKNPVLAIRG 391
Query: 124 ARVSEFQGGKTLSLSMSSVLSLNP-DIPECHKLQGWF-STQTNTRFEPVSQRTGGMGGGA 181
A+VS+F GG++LS+ SS + +NP D+ E L+GW+ +T N +S + GGG
Sbjct: 392 AKVSDF-GGRSLSVLNSSNMRVNPVDMKEAQVLRGWYDNTGKNNEVASISGQRYSAGGG- 449
Query: 182 AGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMY 241
G L + +I+++QLGMG+KADY SV+G+ FR N YKACPS++CNKKVI++++G Y
Sbjct: 450 -GPLKFLSQIKNEQLGMGEKADYISVKGVCVYFRRENCMYKACPSEECNKKVIEEDSGFY 508
Query: 242 RCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH---- 297
CEKC +++ + YRLIL + D+T S WVT FQ AE++LG +A ++G+ E+
Sbjct: 509 -CEKCGRKYPNYKYRLILSAHLADFTGSQWVTCFQESAEALLGRSASDLGQMKENQDEAQ 567
Query: 298 --PALKKALFTQYIFRLRAKLEHYN 320
+ F + F++RAK+E YN
Sbjct: 568 FDQVFASSEFKLHTFKIRAKMETYN 592
>gi|431891029|gb|ELK01908.1| Replication protein A 70 kDa DNA-binding subunit [Pteropus alecto]
Length = 599
Score = 390 bits (1003), Expect = e-105, Method: Compositional matrix adjust.
Identities = 215/543 (39%), Positives = 305/543 (56%), Gaps = 88/543 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ D LS I QI R+IV+ + G R V+I++EL+I
Sbjct: 29 MSDGLNTLSSFMLATQLNTLVEDEQLSSNCICQINRFIVNTLKDG----RRVIILMELSI 84
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNT---------NGSNGVHNNVA----- 430
+K +G KIGNP P N +P + + NGS+GV + V+
Sbjct: 85 LKSAEAVGLKIGNPVPYNEGHGQQQVVPSPVSAASPPTSKPQQQNGSSGVGSTVSKAFGA 144
Query: 431 ---IPRQASAPVVQTH--------PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
R +V + PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKL
Sbjct: 145 SKTFGRAGGTSLVNSSGGTQAKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKL 204
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FSI+L+DESGEIRAT FN++ ++F +I+ +KVYY S TLK ANK+F+++ NDYEM+F
Sbjct: 205 FSIELVDESGEIRATAFNEQVDKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFN 264
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
+ T+VIPC + ++P+V++ F + + S D +D++G+C + + +T K+N +
Sbjct: 265 NETSVIPCEDGH--HLPTVQFDFTGIGDLESKSKDSLVDIIGICKSYEDATKITVKSNNR 322
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG----------- 648
KR+I L+D S V+ TLWG++A+ FD S +PV+A+K ARVS+F G
Sbjct: 323 EVSKRNIYLMDMSGKVVSATLWGEDADKFDGSRQPVMAIKGARVSDFGGRSLSILSSSTI 382
Query: 649 -----------------------------------------NLLLMREIQDQQLGMGDKA 667
N + E + + LG GDKA
Sbjct: 383 IVNPDIPEAYKLRGWFDSEGQALDGVSISDLKSGGIAGSNTNWKTLYEAKSENLGQGDKA 442
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
DY S + R N+ Y+ACP+QDCNKKVIDQ NG+YRCEKC++EF F YR+IL V
Sbjct: 443 DYFSSVATVVYLRKENSMYQACPTQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSVN 502
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKLE 782
I D+ + WVT FQ AE+ILG + VGE E + + A F +IF++R KLE
Sbjct: 503 IADFQENQWVTCFQESAEAILGQSTAYVGELKEKNEQAFEEIFQNANFRSFIFKIRVKLE 562
Query: 783 HYN 785
+N
Sbjct: 563 TFN 565
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 141/328 (42%), Positives = 210/328 (64%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+VIPC + ++P+V++ F + + S D +D++G+
Sbjct: 248 ANKQFTAVKNDYEMTFNNETSVIPCEDGH--HLPTVQFDFTGIGDLESKSKDSLVDIIGI 305
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T K+N + KR+I L+D S V+ TLWG++A+ FD S +PV+A+K AR
Sbjct: 306 CKSYEDATKITVKSNNREVSKRNIYLMDMSGKVVSATLWGEDADKFDGSRQPVMAIKGAR 365
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + +NPDIPE +KL+GWF ++ + VS ++GG+ G
Sbjct: 366 VSDF-GGRSLSILSSSTIIVNPDIPEAYKLRGWFDSEGQA-LDGVSISDLKSGGIAGSNT 423
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E + + LG GDKADY S + R N+ Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 424 -NWKTLYEAKSENLGQGDKADYFSSVATVVYLRKENSMYQACPTQDCNKKVIDQQNGLYR 482
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA--- 299
CEKC++EF F YR+IL V I D+ + WVT FQ AE+ILG + VGE E +
Sbjct: 483 CEKCDREFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQSTAYVGELKEKNEQAFE 542
Query: 300 --LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F +IF++R KLE +N +I
Sbjct: 543 EIFQNANFRSFIFKIRVKLETFNDESRI 570
>gi|410980231|ref|XP_003996481.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit [Felis
catus]
Length = 701
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 214/544 (39%), Positives = 302/544 (55%), Gaps = 89/544 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ LS I QI R+IV+ + G R V+I++EL+I
Sbjct: 33 MSDGLNTLSSFMLATQLNHLVEGEQLSSNCICQINRFIVNTLKDG----RRVIILMELDI 88
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAAT---------NTNGSNGVHNNVAIPRQA 435
+K +G KIGNP P N +PA+ NGS+G+ + + A
Sbjct: 89 LKSAEAVGLKIGNPVPYNEGHGQQQVVPSPASAANPPASKPQQQNGSSGMGSTASKTYGA 148
Query: 436 SAPV-----------------VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGK 478
S V+ PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GK
Sbjct: 149 SKTFGKAGATNLANIGSGGTQVKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGK 208
Query: 479 LFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSF 538
LFS++L+DESGEIRAT FN++ ++F +I+ +KVYYIS TLK ANK+F+++ NDYEM+F
Sbjct: 209 LFSLELVDESGEIRATAFNEQVDKFFPLIDMNKVYYISKGTLKIANKQFTAVKNDYEMTF 268
Query: 539 THSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQ 598
+ T+V+PC + ++P+V++ F + + S D ID++G+C + + +T K+N
Sbjct: 269 NNETSVVPCEDGH--HLPTVQFDFTAIGDLENKSKDSLIDIIGICKSYEDATKITVKSNN 326
Query: 599 KTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG---------- 648
+ KRDI L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G
Sbjct: 327 REVSKRDIYLMDMSGKVVTATLWGEDADRFDGSRQPVMAIKGARVSDFGGRSLSVLSSST 386
Query: 649 ------------------------------------------NLLLMREIQDQQLGMGDK 666
N + E++ + LG GDK
Sbjct: 387 VIMNPDIPEAYKLRGWFDSEGQALDGVSISDLKSGGTGGSNTNWKTLYEVKSENLGHGDK 446
Query: 667 ADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPV 726
ADY S + R N Y+ACP+QDC KKVIDQ NG+YRCEKC+ EF +F YR+IL
Sbjct: 447 ADYFSCVATVVFLRKENCMYQACPAQDCFKKVIDQQNGLYRCEKCDSEFPSFKYRMILSA 506
Query: 727 MIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKL 781
I D+ + WVT FQ AE+I+G T +GE E + + A F +IF++R KL
Sbjct: 507 NIADFQENQWVTCFQESAEAIIGQTTAYIGELKEKNEQAFEEVFQNANFRTFIFKIRVKL 566
Query: 782 EHYN 785
E YN
Sbjct: 567 ETYN 570
Score = 275 bits (704), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 140/326 (42%), Positives = 205/326 (62%), Gaps = 9/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC + ++P+V++ F + + S D ID++G+
Sbjct: 253 ANKQFTAVKNDYEMTFNNETSVVPCEDGH--HLPTVQFDFTAIGDLENKSKDSLIDIIGI 310
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T K+N + KRDI L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 311 CKSYEDATKITVKSNNREVSKRDIYLMDMSGKVVTATLWGEDADRFDGSRQPVMAIKGAR 370
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGMGGGAAGN 184
VS+F GG++LS+ SS + +NPDIPE +KL+GWF ++ +S G GG+ N
Sbjct: 371 VSDF-GGRSLSVLSSSTVIMNPDIPEAYKLRGWFDSEGQALDGVSISDLKSGGTGGSNTN 429
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ E++ + LG GDKADY S + R N Y+ACP+QDC KKVIDQ NG+YRCE
Sbjct: 430 WKTLYEVKSENLGHGDKADYFSCVATVVFLRKENCMYQACPAQDCFKKVIDQQNGLYRCE 489
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PA 299
KC+ EF +F YR+IL I D+ + WVT FQ AE+I+G T +GE E +
Sbjct: 490 KCDSEFPSFKYRMILSANIADFQENQWVTCFQESAEAIIGQTTAYIGELKEKNEQAFEEV 549
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F +IF++R KLE YN +I
Sbjct: 550 FQNANFRTFIFKIRVKLETYNDESRI 575
>gi|149053388|gb|EDM05205.1| replication protein A1 [Rattus norvegicus]
Length = 583
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 208/518 (40%), Positives = 296/518 (57%), Gaps = 69/518 (13%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ G L+ + Q+ R+IV+ + G R V+I+++L +
Sbjct: 46 MSDGLNTLSSFMLATQLNALVEGGQLASNCVCQVHRFIVNTLKDG----RRVVILMDLEV 101
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHP 444
+K E+G KIGNP P N + S+ + A+ G + + S + P
Sbjct: 102 VKSAGEVGVKIGNPVPYN---EGSTVAKAYGASKPFGKPA---GTGLLQPTSGTQSKVVP 155
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
I SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKLFSI+L+DESGEIRAT FN++ ++F
Sbjct: 156 IASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIRATAFNEQVDKFF 215
Query: 505 DMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP 564
+IE +KVYY S TLK ANK+FS++ NDYEM+F + T+V+PC + ++P+V++ F
Sbjct: 216 PLIEVNKVYYFSKGTLKIANKQFSAVKNDYEMTFNNETSVLPCEDGH--HLPTVQFDFTG 273
Query: 565 LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE 624
+ + S D +D++G+C + + +T K+N + KR+I L+D S VT TLWG++
Sbjct: 274 IGDLESKSKDSLVDIIGICKSYEDATKITVKSNNREVAKRNICLMDMSGKVVTATLWGED 333
Query: 625 AETFDASNKPVIAVKAARVSEFQG------------------------------------ 648
A+ FD S +PV+A+K ARVS+F G
Sbjct: 334 ADKFDGSRQPVMAIKGARVSDFGGRSLSVLSSSTVLVNPDIPEAYKLRGWFDSEGQALDG 393
Query: 649 ----------------NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQ 692
N + E + + LG GDKADY S + R N Y+ACP+Q
Sbjct: 394 VSISDLRSGGTGGSNTNWKTLYEAKSENLGQGDKADYFSTVATVVFLRKENCMYQACPTQ 453
Query: 693 DCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA 752
DCNKKVIDQ NG+YRCEKC++EF F YR+IL V I D+ + WVT FQ AE+ILG
Sbjct: 454 DCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNT 513
Query: 753 QEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYN 785
+GE E + + A F + FR+R KLE YN
Sbjct: 514 VYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYN 551
Score = 276 bits (707), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 144/328 (43%), Positives = 207/328 (63%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+FS++ NDYEM+F + T+V+PC + ++P+V++ F + + S D +D++G+
Sbjct: 234 ANKQFSAVKNDYEMTFNNETSVLPCEDGH--HLPTVQFDFTGIGDLESKSKDSLVDIIGI 291
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T K+N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 292 CKSYEDATKITVKSNNREVAKRNICLMDMSGKVVTATLWGEDADKFDGSRQPVMAIKGAR 351
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + +NPDIPE +KL+GWF ++ + VS R+GG GG
Sbjct: 352 VSDF-GGRSLSVLSSSTVLVNPDIPEAYKLRGWFDSEGQA-LDGVSISDLRSGGTGGSNT 409
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E + + LG GDKADY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 410 -NWKTLYEAKSENLGQGDKADYFSTVATVVFLRKENCMYQACPTQDCNKKVIDQQNGLYR 468
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC++EF F YR+IL V I D+ + WVT FQ AE+ILG +GE E +
Sbjct: 469 CEKCDREFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNTVYLGELKEKNEQAFE 528
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F + FR+R KLE YN +I
Sbjct: 529 EVFQNANFRSFTFRIRVKLETYNDESRI 556
>gi|417411795|gb|JAA52323.1| Putative replication factor-a protein 1, partial [Desmodus
rotundus]
Length = 588
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 213/546 (39%), Positives = 304/546 (55%), Gaps = 94/546 (17%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ D LS I QI R+IV+ + G R V+I++EL++
Sbjct: 18 MSDGLNTLSSFMLATQLNPLVEDEQLSSNCICQINRFIVNTLKDG----RRVVILMELDV 73
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQT------------PAATNTNGSNGVHNNVAIP 432
+K +G KIGNP P N + QQ + S+G+ ++VA P
Sbjct: 74 LKSAEAVGVKIGNPVPYN---EGHGQQQVVPSPASAASPPASKPPQQSASSGMVSSVAKP 130
Query: 433 RQASAPV----------------VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGS 476
AS + PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG
Sbjct: 131 YGASKTFGKAGGTSLVNSSGGSQAKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGE 190
Query: 477 GKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEM 536
GKLFSI+L+DESGEIRAT FN++ ++F +I+ +KVYY S TLK ANK+F+++ NDYEM
Sbjct: 191 GKLFSIELVDESGEIRATAFNEQADKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEM 250
Query: 537 SFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKT 596
+F + T+V+PC + N+P+V++ F + + D +DV+G+C + + +T K
Sbjct: 251 TFNNETSVMPCEDGR--NLPTVQFGFTKIDDLESKPKDSLVDVIGICKSYEDATKITVKA 308
Query: 597 NQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG-------- 648
N + KR+I L+D S V+ TLWG++A+ FD S +PV+A+K ARVS+F G
Sbjct: 309 NNREVSKRNIYLMDTSGKVVSATLWGEDADKFDGSRQPVMAIKGARVSDFGGRSLSVISS 368
Query: 649 --------------------------------------------NLLLMREIQDQQLGMG 664
N + E++ + LG G
Sbjct: 369 STVIVNPDIPEAYKLRGWFDSEGQALDGVSISDLKSGGTAGSATNWKTLYEVKSENLGQG 428
Query: 665 DKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLIL 724
DKADY S + R N+ Y+ACP+QDCNKKVIDQ NG+YRCEKC++EF F YR+IL
Sbjct: 429 DKADYFSCVATVVYLRKENSMYQACPTQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMIL 488
Query: 725 PVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----LKKALFTQYIFRLRA 779
V I D+ ++ WVT FQ AE+ILG + +GE E + + A F ++F++R
Sbjct: 489 SVNIADYQDNQWVTCFQESAEAILGQSTAYLGELKEKNEQAFEEIFQNANFRSFVFKIRV 548
Query: 780 KLEHYN 785
KLE YN
Sbjct: 549 KLETYN 554
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 139/326 (42%), Positives = 207/326 (63%), Gaps = 9/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC + N+P+V++ F + + D +DV+G+
Sbjct: 237 ANKQFTAVKNDYEMTFNNETSVMPCEDGR--NLPTVQFGFTKIDDLESKPKDSLVDVIGI 294
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T K N + KR+I L+D S V+ TLWG++A+ FD S +PV+A+K AR
Sbjct: 295 CKSYEDATKITVKANNREVSKRNIYLMDTSGKVVSATLWGEDADKFDGSRQPVMAIKGAR 354
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGMGGGAAGN 184
VS+F GG++LS+ SS + +NPDIPE +KL+GWF ++ +S G G+A N
Sbjct: 355 VSDF-GGRSLSVISSSTVIVNPDIPEAYKLRGWFDSEGQALDGVSISDLKSGGTAGSATN 413
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ E++ + LG GDKADY S + R N+ Y+ACP+QDCNKKVIDQ NG+YRCE
Sbjct: 414 WKTLYEVKSENLGQGDKADYFSCVATVVYLRKENSMYQACPTQDCNKKVIDQQNGLYRCE 473
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA----- 299
KC++EF F YR+IL V I D+ ++ WVT FQ AE+ILG + +GE E +
Sbjct: 474 KCDREFPNFKYRMILSVNIADYQDNQWVTCFQESAEAILGQSTAYLGELKEKNEQAFEEI 533
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F ++F++R KLE YN +I
Sbjct: 534 FQNANFRSFVFKIRVKLETYNDESRI 559
>gi|426383460|ref|XP_004058298.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit
[Gorilla gorilla gorilla]
Length = 648
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 206/518 (39%), Positives = 298/518 (57%), Gaps = 69/518 (13%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ + LS + QI R+IV+ + G R V+I++EL +
Sbjct: 109 MSDGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDG----RRVVILMELEV 164
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHP 444
+K +G KIGNP P N + S+ + A+ T G ++ + + P
Sbjct: 165 LKSAEAVGVKIGNPVPYN---EGSTVSKVYGASKTFGKAA---GPSLSHTSGGTQSKVVP 218
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
I SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKLFS++L+DESGEIRAT FN++ ++F
Sbjct: 219 IASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFF 278
Query: 505 DMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP 564
+IE +KVYY S TLK ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F
Sbjct: 279 PLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFTG 336
Query: 565 LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE 624
+ + S D +D++G+C + + +T ++N + KR+I L+D S VT TLWG++
Sbjct: 337 IDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGED 396
Query: 625 AETFDASNKPVIAVKAARVSEFQGNLL--------------------------------- 651
A+ FD S +PV+A+K ARVS+F G L
Sbjct: 397 ADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDG 456
Query: 652 -------------------LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQ 692
+ E++ + LG GDK DY S + R N Y+ACP+Q
Sbjct: 457 VSISDLKSGGVGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQ 516
Query: 693 DCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA 752
DCNKKVIDQ NG+YRCEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG A
Sbjct: 517 DCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNA 576
Query: 753 QEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYN 785
+GE + + + A F +IFR+R K+E YN
Sbjct: 577 AYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETYN 614
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 141/328 (42%), Positives = 208/328 (63%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F + + S D +D++G+
Sbjct: 297 ANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGI 354
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T ++N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 355 CKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGAR 414
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + NPDIPE +KL+GWF + + VS ++GG+GG
Sbjct: 415 VSDF-GGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQA-LDGVSISDLKSGGVGGSNT 472
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 473 -NWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 531
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG A +GE + +
Sbjct: 532 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFE 591
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F +IFR+R K+E YN +I
Sbjct: 592 EVFQNANFRSFIFRVRVKVETYNDESRI 619
>gi|307170289|gb|EFN62644.1| Replication protein A 70 kDa DNA-binding subunit [Camponotus
floridanus]
Length = 608
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 208/523 (39%), Positives = 308/523 (58%), Gaps = 69/523 (13%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG N+NSF MLATQLN +I + L+E+ I ++ Y +S V+SG R V++I+ + +
Sbjct: 51 VSDGKNMNSFTMLATQLNHLIENNILTEYAICKVSNYHLSSVNSGGKEKR-VILIMGIEV 109
Query: 385 IKPGTEIGFKIGNPQPL------NTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAP 438
PG+++G K+GNP + ++ T + ST QT TNG+ N+ +
Sbjct: 110 TTPGSKVGCKLGNPTNIESKSEADSTTADKSTGQTTGRYQTNGTAQRSNS----NNYGSS 165
Query: 439 VVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFND 498
+ T PI +LSPYQNKW IK RVTNK+PIR W+N+RG GK+FS+DL+DESGEIR T F D
Sbjct: 166 DISTTPIAALSPYQNKWVIKVRVTNKSPIRTWSNSRGEGKVFSMDLIDESGEIRCTAFRD 225
Query: 499 ECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV 558
C++F+DM+E VYYIS C LK ANK+F+S+ NDYEM+ T+ T ++PC+E+ + ++P++
Sbjct: 226 MCDKFYDMLEIGNVYYISRCQLKAANKQFNSLKNDYEMTMTNDTEIVPCHEN-IEDIPTL 284
Query: 559 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM 618
++ F + + ++ IDVLGV ++ + + + ++KRDI +VD S A V++
Sbjct: 285 QFNFCSISQVENKERNDIIDVLGVVTTFNDVQHIVKRNTGQEFVKRDINIVDDSNAMVSV 344
Query: 619 TLWGKEAETFDASNKPVIAVKAARVSEFQG--NLLLM----------------------- 653
TLWGK+AE FD SN P+IA+K AR+ EF G NL L+
Sbjct: 345 TLWGKQAEDFDGSNNPIIAIKGARIGEFNGGKNLSLLNSSTLEKDPDLPEAHRLRGWYTT 404
Query: 654 --------------------------REIQDQQLGMG-DKADYCSVRGIIQVFRGSNTTY 686
E + +LG + D +V I + R N+ Y
Sbjct: 405 VGPSENAKSLSRVGGGGDFNAPLHTFEEATEARLGEKLNIPDSYTVMATICLIRVENSIY 464
Query: 687 KACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAES 746
KACP + C KK+IDQ+ G++RCEKCN+++ F YRL+ + I D T S W+T F +AE
Sbjct: 465 KACPVESCKKKLIDQSTGIFRCEKCNRDYPNFVYRLLASMNIADATGSRWITAFSEDAEK 524
Query: 747 ILGVTAQEVGESTE-DHPALKK----ALFTQYIFRLRAKLEHY 784
ILG++AQE+GE E D+ A + A F +++F LRAK E +
Sbjct: 525 ILGMSAQELGELKENDNEAYMQKFGDANFKRFMFSLRAKSEVF 567
Score = 262 bits (669), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 133/326 (40%), Positives = 203/326 (62%), Gaps = 8/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+S+ NDYEM+ T+ T ++PC+E+ + ++P++++ F + + ++ IDVLGV
Sbjct: 250 ANKQFNSLKNDYEMTMTNDTEIVPCHEN-IEDIPTLQFNFCSISQVENKERNDIIDVLGV 308
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
++ + + + ++KRDI +VD S A V++TLWGK+AE FD SN P+IA+K AR
Sbjct: 309 VTTFNDVQHIVKRNTGQEFVKRDINIVDDSNAMVSVTLWGKQAEDFDGSNNPIIAIKGAR 368
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
+ EF GGK LSL SS L +PD+PE H+L+GW++T + R GG GG L
Sbjct: 369 IGEFNGGKNLSLLNSSTLEKDPDLPEAHRLRGWYTTVGPSENAKSLSRVGG-GGDFNAPL 427
Query: 186 LLMREIQDQQLGMG-DKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
E + +LG + D +V I + R N+ YKACP + C KK+IDQ+ G++RCE
Sbjct: 428 HTFEEATEARLGEKLNIPDSYTVMATICLIRVENSIYKACPVESCKKKLIDQSTGIFRCE 487
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPALKK- 302
KCN+++ F YRL+ + I D T S W+T F +AE ILG++AQE+GE E D+ A +
Sbjct: 488 KCNRDYPNFVYRLLASMNIADATGSRWITAFSEDAEKILGMSAQELGELKENDNEAYMQK 547
Query: 303 ---ALFTQYIFRLRAKLEHYNGTKKI 325
A F +++F LRAK E + ++
Sbjct: 548 FGDANFKRFMFSLRAKSEVFQDEMRV 573
>gi|224076356|ref|XP_002197483.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit isoform
1 [Taeniopygia guttata]
gi|449479760|ref|XP_004177049.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit isoform
2 [Taeniopygia guttata]
Length = 613
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 219/540 (40%), Positives = 297/540 (55%), Gaps = 85/540 (15%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGVN S MLATQLN ++ + LS I Q+ R+IV+ + G R V+I++++ +
Sbjct: 45 MSDGVNTLSSFMLATQLNSLVEEERLSARCICQVNRFIVNSLKDG----RRVVILMDVTV 100
Query: 385 IKPGTEIGFKIGNPQPLNT-----------NTDNSSTQQT--------PAATNTNGSNGV 425
++ ++G IGNPQP N N S QQ PAA + +
Sbjct: 101 LQTADQVGGPIGNPQPYNEGQGQRSAAPAGNLAASKPQQQNGNLSGAGPAAPKYHAPSNQ 160
Query: 426 HNNVAIPRQASAP---VVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSI 482
+ P P ++ PI SL+PYQ+KWTI ARVT K IR W+N+RG GKLFSI
Sbjct: 161 FGKASAPSALKTPGGSQIKVVPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSI 220
Query: 483 DLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHST 542
+L+DESGEIRAT FND+ ++F +IE +KVYY + LK ANK+++++ NDYE++FT+ T
Sbjct: 221 ELVDESGEIRATAFNDQADKFFPLIELNKVYYFTKGNLKTANKQYTAVKNDYEITFTNET 280
Query: 543 TVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYM 602
+V+PC D+ ++PSV++ FV + + D +DV+G+C +++ + K N +
Sbjct: 281 SVVPC--DDAQHLPSVQFDFVSISDLENTPKDSIVDVIGICKSYEDVTKIVVKANNREVS 338
Query: 603 KRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEF---------------- 646
KR++ L+D S VT TLWG EAE FD S +PVIA+K ARVS+F
Sbjct: 339 KRNVHLMDTSGKLVTATLWGNEAEQFDGSRQPVIAIKGARVSDFGGRSLSVLSSSTVVIN 398
Query: 647 ---------------QGNLLLMREIQD---------------------QQLGMGDKADYC 670
+G LL I D + LG GDKADY
Sbjct: 399 PDSPEAFKLRGWFDSEGQLLECASISDVRGGPAAGANTNWKTLFEAKAENLGQGDKADYF 458
Query: 671 SVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGD 730
S G I R N Y+ACPSQDCNKKVIDQ NG+YRCEKC++EF F YRL+L V I D
Sbjct: 459 SCVGTIVHLRKENCMYQACPSQDCNKKVIDQQNGLYRCEKCDREFPNFKYRLMLLVTIAD 518
Query: 731 WTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYN 785
WVT FQ+ AE ILG A +GE E + + A F Y FR+R KLE YN
Sbjct: 519 CLEYQWVTCFQDTAEIILGQNAAFLGELKEKNEQAFEEVFQNANFNTYEFRIRVKLETYN 578
Score = 279 bits (714), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 148/326 (45%), Positives = 202/326 (61%), Gaps = 9/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+++++ NDYE++FT+ T+V+PC D+ ++PSV++ FV + + D +DV+G+
Sbjct: 261 ANKQYTAVKNDYEITFTNETSVVPC--DDAQHLPSVQFDFVSISDLENTPKDSIVDVIGI 318
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C +++ + K N + KR++ L+D S VT TLWG EAE FD S +PVIA+K AR
Sbjct: 319 CKSYEDVTKIVVKANNREVSKRNVHLMDTSGKLVTATLWGNEAEQFDGSRQPVIAIKGAR 378
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGMGGGAAGN 184
VS+F GG++LS+ SS + +NPD PE KL+GWF ++ +S GG GA N
Sbjct: 379 VSDF-GGRSLSVLSSSTVVINPDSPEAFKLRGWFDSEGQLLECASISDVRGGPAAGANTN 437
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ E + + LG GDKADY S G I R N Y+ACPSQDCNKKVIDQ NG+YRCE
Sbjct: 438 WKTLFEAKAENLGQGDKADYFSCVGTIVHLRKENCMYQACPSQDCNKKVIDQQNGLYRCE 497
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PA 299
KC++EF F YRL+L V I D WVT FQ+ AE ILG A +GE E +
Sbjct: 498 KCDREFPNFKYRLMLLVTIADCLEYQWVTCFQDTAEIILGQNAAFLGELKEKNEQAFEEV 557
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F Y FR+R KLE YN +I
Sbjct: 558 FQNANFNTYEFRIRVKLETYNDESRI 583
>gi|359320313|ref|XP_003639310.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Canis lupus familiaris]
Length = 616
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 212/543 (39%), Positives = 299/543 (55%), Gaps = 88/543 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ + LS I QI R+IV+ + G R V+I++ELNI
Sbjct: 46 MSDGLNTLSSFMLATQLNPLVEEEQLSSNCICQINRFIVNTLKDG----RRVVILMELNI 101
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAAT---------NTNGSN------------ 423
+K +G KIGNP P N +P + NGS+
Sbjct: 102 LKSAEAVGLKIGNPVPYNEGHGQQQAVPSPVSAANPPANKPQQQNGSSAMGFTASKTYSA 161
Query: 424 ----GVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
G ++ + V+ PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKL
Sbjct: 162 SKTFGKPGGTSLASSSGGTQVKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKL 221
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FSI+L+DESGEIRAT FN++ ++F +I+ +KVYYIS LK ANK+F+++ NDYEM+F
Sbjct: 222 FSIELVDESGEIRATAFNEQVDKFFPLIDMNKVYYISKGILKIANKQFTAVKNDYEMTFN 281
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
+ T+V+PC + ++P+V++ F + + + D ID++G+C E + +T K+N +
Sbjct: 282 NETSVMPCEDGH--HLPTVQFDFTGIGDLESKTKDSLIDIIGICKSYEEATKITVKSNNR 339
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL-------- 651
KR+I L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G L
Sbjct: 340 EVSKRNIYLMDMSGKVVTATLWGEDADRFDGSRQPVMAIKGARVSDFGGRSLSVLSSSTI 399
Query: 652 --------------------------------------------LMREIQDQQLGMGDKA 667
+ E++ + LG GDKA
Sbjct: 400 IVNPDIPEAYKLRGWFDSEGQALDGISISDLKSGGTGGGNTNWKTLYEVKSENLGHGDKA 459
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF +F YR+IL V
Sbjct: 460 DYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDSEFPSFKYRMILSVN 519
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLE 782
I D+ + WVT FQ AE+I+G +GE E + + A F + FR+R KLE
Sbjct: 520 IADFQENQWVTCFQESAEAIIGQNTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLE 579
Query: 783 HYN 785
YN
Sbjct: 580 TYN 582
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 140/326 (42%), Positives = 204/326 (62%), Gaps = 9/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC + ++P+V++ F + + + D ID++G+
Sbjct: 265 ANKQFTAVKNDYEMTFNNETSVMPCEDGH--HLPTVQFDFTGIGDLESKTKDSLIDIIGI 322
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C E + +T K+N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 323 CKSYEEATKITVKSNNREVSKRNIYLMDMSGKVVTATLWGEDADRFDGSRQPVMAIKGAR 382
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFE-PVSQRTGGMGGGAAGN 184
VS+F GG++LS+ SS + +NPDIPE +KL+GWF ++ +S G GG N
Sbjct: 383 VSDF-GGRSLSVLSSSTIIVNPDIPEAYKLRGWFDSEGQALDGISISDLKSGGTGGGNTN 441
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ E++ + LG GDKADY S + R N Y+ACP+QDCNKKVIDQ NG+YRCE
Sbjct: 442 WKTLYEVKSENLGHGDKADYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCE 501
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PA 299
KC+ EF +F YR+IL V I D+ + WVT FQ AE+I+G +GE E +
Sbjct: 502 KCDSEFPSFKYRMILSVNIADFQENQWVTCFQESAEAIIGQNTAYLGELKEKNEQAFEEV 561
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F + FR+R KLE YN +I
Sbjct: 562 FQNANFRSFTFRIRVKLETYNDESRI 587
>gi|449265984|gb|EMC77111.1| Replication protein A 70 kDa DNA-binding subunit, partial [Columba
livia]
Length = 607
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 223/544 (40%), Positives = 301/544 (55%), Gaps = 90/544 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGVN S MLATQLN ++ + L+ I Q+ ++ V+ + G R V+I+++LN+
Sbjct: 36 MSDGVNTLSSFMLATQLNSLVEEERLAAHCICQVNKFYVNSLKDG----RRVVILMDLNV 91
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHN-NVAI-----PR----- 433
+K ++G IGNP P N + PAA G N NV++ P+
Sbjct: 92 LKTADKVGGNIGNPVPYNEGQGQQRSS-APAANPAPGKPQQQNGNVSVAGPAAPKYHAPS 150
Query: 434 ----QASAP---------VVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLF 480
+ASAP V+ PI SL+PYQ+KWTI ARVT K IR W+N+RG GKLF
Sbjct: 151 NQFGKASAPNLLKTPGGSQVKVVPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLF 210
Query: 481 SIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTH 540
SI+L+DESGEIRAT FND+ ++F +IE +KVYY S TLK ANK++++I NDYE++FT
Sbjct: 211 SIELVDESGEIRATAFNDQADKFFPLIELNKVYYFSKGTLKSANKQYTAIKNDYEITFTS 270
Query: 541 STTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKT 600
T+V+PC D+ ++PSV++ FV + + D +DV+G+C +++ + K N +
Sbjct: 271 ETSVVPC--DDAQHLPSVQFDFVSISDLENTPKDSIVDVIGICKSYEDVTKIIVKANNRE 328
Query: 601 YMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEF-------------- 646
KR++ L+D S VT TLWG EAE FD S +PVIA+K ARVS+F
Sbjct: 329 VSKRNVHLMDTSGKLVTATLWGNEAEQFDGSRQPVIAIKGARVSDFGGRSLSVLSSSTVI 388
Query: 647 -------------------QGNLLLMREIQD---------------------QQLGMGDK 666
+G LL I D + LG GDK
Sbjct: 389 INPDSPEAFKLRGWYEFDSEGQLLECTSISDVRGGLAAGANTNWKTLFEAKAENLGQGDK 448
Query: 667 ADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPV 726
ADY S G + R N Y+ACPSQDCNKKVIDQ NG+YRCEKC++EF F YR++L V
Sbjct: 449 ADYFSCVGTVVHLRKENCMYQACPSQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMMLLV 508
Query: 727 MIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKL 781
I D WVT FQ+ AE ILG A +GE E + + A F Y FR+R KL
Sbjct: 509 TIADCLEYQWVTCFQDTAEFILGQKAAFLGELKEKNEQAFEEVFQNANFNTYEFRIRVKL 568
Query: 782 EHYN 785
E YN
Sbjct: 569 ETYN 572
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 146/328 (44%), Positives = 202/328 (61%), Gaps = 11/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK++++I NDYE++FT T+V+PC D+ ++PSV++ FV + + D +DV+G+
Sbjct: 253 ANKQYTAIKNDYEITFTSETSVVPC--DDAQHLPSVQFDFVSISDLENTPKDSIVDVIGI 310
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C +++ + K N + KR++ L+D S VT TLWG EAE FD S +PVIA+K AR
Sbjct: 311 CKSYEDVTKIIVKANNREVSKRNVHLMDTSGKLVTATLWGNEAEQFDGSRQPVIAIKGAR 370
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRF---EPVSQRTGGMGGGAA 182
VS+F GG++LS+ SS + +NPD PE KL+GW+ + + +S GG+ GA
Sbjct: 371 VSDF-GGRSLSVLSSSTVIINPDSPEAFKLRGWYEFDSEGQLLECTSISDVRGGLAAGAN 429
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E + + LG GDKADY S G + R N Y+ACPSQDCNKKVIDQ NG+YR
Sbjct: 430 TNWKTLFEAKAENLGQGDKADYFSCVGTVVHLRKENCMYQACPSQDCNKKVIDQQNGLYR 489
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC++EF F YR++L V I D WVT FQ+ AE ILG A +GE E +
Sbjct: 490 CEKCDREFPNFKYRMMLLVTIADCLEYQWVTCFQDTAEFILGQKAAFLGELKEKNEQAFE 549
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F Y FR+R KLE YN +I
Sbjct: 550 EVFQNANFNTYEFRIRVKLETYNDESRI 577
>gi|344290276|ref|XP_003416864.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit
[Loxodonta africana]
Length = 603
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 213/543 (39%), Positives = 302/543 (55%), Gaps = 88/543 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGVN S MLATQLN ++ + LS I QI R+IV+ + G R V+I++EL +
Sbjct: 33 MSDGVNTLSSFMLATQLNPLVEEERLSSNCICQINRFIVNTLKDG----RRVVILMELEV 88
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNT---------NGSNGVHNNVA----- 430
+K +G KIGNP P N TPA+ + NGS+G+ + V+
Sbjct: 89 LKSAEAVGLKIGNPVPYNEGHGQQQVVPTPASAASPPTSKPQQQNGSSGMGSIVSKAYGA 148
Query: 431 ---IPRQASAPVVQTH--------PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
+ +V T PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKL
Sbjct: 149 PKTFGKAGGTSLVNTAGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKL 208
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FSI+L+DESGEIRAT FN++ ++F +IE +KVYY S TLK ANK+F+++ NDYEM+F
Sbjct: 209 FSIELVDESGEIRATAFNEQADKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFN 268
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
+ T+V+PC + ++P++++ F + + S D +D++GVC + + + K+N +
Sbjct: 269 NETSVMPCEDGH--HLPTMQFDFTGIDDLENKSKDSLVDIIGVCKSYEDATKIVVKSNNR 326
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG----------- 648
KR+I L+D S V+ TLWG++A+ FD + +PV+A+K ARVS+F G
Sbjct: 327 EVSKRNIYLMDMSGKVVSATLWGEDADKFDGTRQPVMAIKGARVSDFGGRSLSVLSSSTV 386
Query: 649 -----------------------------------------NLLLMREIQDQQLGMGDKA 667
N + E++ + LG GDKA
Sbjct: 387 IVNPDIPEAYKLRGWFDSEGQALDGVSISDLKSGGIGGSNTNWKTLYEVKSENLGQGDKA 446
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF F YR+IL
Sbjct: 447 DYFSCVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILAAN 506
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLE 782
I D+ + WVT FQ AE+ILG +A +GE E + + A F + FR+R KLE
Sbjct: 507 IADFLENQWVTCFQESAEAILGQSAAYLGELKEKNEQAFEEVFQNASFRSFTFRIRIKLE 566
Query: 783 HYN 785
YN
Sbjct: 567 TYN 569
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 140/332 (42%), Positives = 209/332 (62%), Gaps = 13/332 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC + ++P++++ F + + S D +D++GV
Sbjct: 252 ANKQFTAVKNDYEMTFNNETSVMPCEDGH--HLPTMQFDFTGIDDLENKSKDSLVDIIGV 309
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + + K+N + KR+I L+D S V+ TLWG++A+ FD + +PV+A+K AR
Sbjct: 310 CKSYEDATKIVVKSNNREVSKRNIYLMDMSGKVVSATLWGEDADKFDGTRQPVMAIKGAR 369
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + +NPDIPE +KL+GWF ++ + VS ++GG+GG
Sbjct: 370 VSDF-GGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQA-LDGVSISDLKSGGIGGSNT 427
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E++ + LG GDKADY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 428 -NWKTLYEVKSENLGQGDKADYFSCVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 486
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC+ EF F YR+IL I D+ + WVT FQ AE+ILG +A +GE E +
Sbjct: 487 CEKCDSEFPNFKYRMILAANIADFLENQWVTCFQESAEAILGQSAAYLGELKEKNEQAFE 546
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKIPDGV 329
+ A F + FR+R KLE YN +I V
Sbjct: 547 EVFQNASFRSFTFRIRIKLETYNDESRIKASV 578
>gi|149724785|ref|XP_001504393.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit [Equus
caballus]
Length = 603
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 212/543 (39%), Positives = 304/543 (55%), Gaps = 88/543 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ + LS I Q+ R+IV+ + G R V+I++EL +
Sbjct: 33 MSDGLNTLSSFMLATQLNPLVEEERLSSNCICQVNRFIVNTLKDG----RRVVILMELEV 88
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNT---------NGSNGVHNNVAIPRQA 435
+K +G KIGNP P N +P + + NGS+G+ + V+ A
Sbjct: 89 LKSAEAVGLKIGNPVPYNEGHGQQQVVPSPVSAASPPTSKPQPQNGSSGMGSTVSKAYGA 148
Query: 436 S--------APVVQTH--------PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
S A +V + PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKL
Sbjct: 149 SKTFGKAGGASLVNSSGGTQAKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKL 208
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FSI+L+DESGEIRAT FN++ ++F +++ +KVYY S TLK ANK+F+++ NDYEM+F
Sbjct: 209 FSIELVDESGEIRATAFNEQADKFFPLLDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFN 268
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
+ T+V+PC +D ++P+V++ F + + D +D++G+C + + +T K+N +
Sbjct: 269 NETSVMPCEDDH--HLPTVQFDFTGIGELENKPKDSLVDIIGICKSYEDATKITVKSNNR 326
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG----------- 648
KR+I L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G
Sbjct: 327 EVSKRNIYLMDTSGKVVTTTLWGEDADRFDGSRQPVMAIKGARVSDFGGRSLSVLSSSTV 386
Query: 649 -----------------------------------------NLLLMREIQDQQLGMGDKA 667
N + E++ + LG GDKA
Sbjct: 387 IMNPDISEAYKLRGWFDSEGQALDGVSISDLKGGGTGGSNTNWKTLYEVKSENLGQGDKA 446
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
DY S + R N Y+ACPSQDCNKKVIDQ NG+YRCEKC+ EF +F YR+IL V
Sbjct: 447 DYFSSVATVVYLRKENCMYQACPSQDCNKKVIDQQNGLYRCEKCDSEFPSFKYRMILSVN 506
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLE 782
I D+ + WVT FQ AE+ILG +GE E + + A F + FR+R KLE
Sbjct: 507 IADFQENQWVTCFQESAEAILGQNTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLE 566
Query: 783 HYN 785
+N
Sbjct: 567 TFN 569
Score = 263 bits (671), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 140/326 (42%), Positives = 205/326 (62%), Gaps = 9/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F + + D +D++G+
Sbjct: 252 ANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFTGIGELENKPKDSLVDIIGI 309
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T K+N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 310 CKSYEDATKITVKSNNREVSKRNIYLMDTSGKVVTTTLWGEDADRFDGSRQPVMAIKGAR 369
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGMGGGAAGN 184
VS+F GG++LS+ SS + +NPDI E +KL+GWF ++ +S GG GG+ N
Sbjct: 370 VSDF-GGRSLSVLSSSTVIMNPDISEAYKLRGWFDSEGQALDGVSISDLKGGGTGGSNTN 428
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ E++ + LG GDKADY S + R N Y+ACPSQDCNKKVIDQ NG+YRCE
Sbjct: 429 WKTLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQACPSQDCNKKVIDQQNGLYRCE 488
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PA 299
KC+ EF +F YR+IL V I D+ + WVT FQ AE+ILG +GE E +
Sbjct: 489 KCDSEFPSFKYRMILSVNIADFQENQWVTCFQESAEAILGQNTAYLGELKEKNEQAFEEV 548
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F + FR+R KLE +N +I
Sbjct: 549 FQNANFRSFTFRIRVKLETFNDESRI 574
>gi|348567597|ref|XP_003469585.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Cavia porcellus]
Length = 603
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 211/543 (38%), Positives = 301/543 (55%), Gaps = 88/543 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQ+N ++ L+ I QI R+IV+ + G R V+I++EL +
Sbjct: 33 MSDGINTLSSFMLATQMNSLVEQEQLAANCICQIDRFIVNTLKDG----RRVVILMELKV 88
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNT---------NGSNGVHNNVAIPRQA 435
+K +G KIGNP P N +P ++ NGS+GV ++V A
Sbjct: 89 LKSADMVGVKIGNPLPYNEGQGQPQAVPSPVTASSPLTGRPQQQNGSSGVGSSVPKAYGA 148
Query: 436 SA------------PVVQTH----PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
S P T PIVSL+PYQ+KWTI+ARVTNK+ IR W+N+RG GKL
Sbjct: 149 SKTFGKPGGSGLLHPSGGTQSKVVPIVSLTPYQSKWTIRARVTNKSQIRTWSNSRGEGKL 208
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FS++L+DESGEIRA FN++ ++F +IE +KVYY S +LK ANK+FS++ NDYEM+F
Sbjct: 209 FSLELVDESGEIRAAAFNEQVDKFFPLIEVNKVYYFSKGSLKIANKQFSAVKNDYEMTFN 268
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
T+V+PC +D ++P+V++ F + + S D +D++G+C + + +T K+N +
Sbjct: 269 SETSVVPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVKSNNR 326
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL-------- 651
KR+I L+D S VT TLWG++A+ FD S +PVIA+K ARVS+F G L
Sbjct: 327 EVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVIAIKGARVSDFGGRSLSVLSSSTI 386
Query: 652 --------------------------------------------LMREIQDQQLGMGDKA 667
+ E++ + LG GDKA
Sbjct: 387 IMNPDIPEAYKLRGWFDTEGQTLDGVSISDLKGGALGTSNTNWKTLYEVKSENLGQGDKA 446
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
DY S + R N Y+ACP+Q+CNKKVIDQ NG+YRCEKC++EF F YR+IL
Sbjct: 447 DYFSSVATVVYLRKENCMYQACPTQECNKKVIDQQNGLYRCEKCDREFPNFKYRMILSAN 506
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLE 782
I D+ + WVT FQ AE+ILG +GE + + + A F + F++R KLE
Sbjct: 507 IADFQENQWVTCFQESAEAILGQNTAYLGELKDKNEQAFEEVFQNANFRSFTFKIRVKLE 566
Query: 783 HYN 785
YN
Sbjct: 567 TYN 569
Score = 285 bits (730), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 140/326 (42%), Positives = 205/326 (62%), Gaps = 9/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+FS++ NDYEM+F T+V+PC +D ++P+V++ F + + S D +D++G+
Sbjct: 252 ANKQFSAVKNDYEMTFNSETSVVPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGI 309
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T K+N + KR+I L+D S VT TLWG++A+ FD S +PVIA+K AR
Sbjct: 310 CKSYEDATKITVKSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVIAIKGAR 369
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGMGGGAAGN 184
VS+F GG++LS+ SS + +NPDIPE +KL+GWF T+ T +S GG G + N
Sbjct: 370 VSDF-GGRSLSVLSSSTIIMNPDIPEAYKLRGWFDTEGQTLDGVSISDLKGGALGTSNTN 428
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ E++ + LG GDKADY S + R N Y+ACP+Q+CNKKVIDQ NG+YRCE
Sbjct: 429 WKTLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQACPTQECNKKVIDQQNGLYRCE 488
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PA 299
KC++EF F YR+IL I D+ + WVT FQ AE+ILG +GE + +
Sbjct: 489 KCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAILGQNTAYLGELKDKNEQAFEEV 548
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F + F++R KLE YN ++
Sbjct: 549 FQNANFRSFTFKIRVKLETYNDESRV 574
>gi|326931344|ref|XP_003211792.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Meleagris gallopavo]
Length = 601
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 217/541 (40%), Positives = 302/541 (55%), Gaps = 86/541 (15%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGVN S MLATQLN ++ + LS I Q+ R+IV+ + G R V+I+++L++
Sbjct: 32 MSDGVNTLSSFMLATQLNPLVEEERLSAHCICQVNRFIVNSLKDG----RRVVILMDLDV 87
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAI-----PR------ 433
+K +G +GNP P N + A T N + N+++ P+
Sbjct: 88 LKTADMVGGTVGNPVPYNEGQGQQRSSAPTANTAPNKPQQQNGNLSVAGSAAPKYHAPSN 147
Query: 434 ---QASAPV-VQTH--------PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFS 481
+ASAP V+T PI SL+PYQ+KWTI ARVT K IR W+N+RG GKLFS
Sbjct: 148 QFSKASAPSSVKTPGGTQSKVVPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFS 207
Query: 482 IDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHS 541
I+L+DESGEIRAT FND+ ++F +IE +KVYY + LK ANK+++++ NDYE++FT+
Sbjct: 208 IELVDESGEIRATAFNDQADKFFPLIELNKVYYFTKGNLKTANKQYTAVKNDYEITFTNE 267
Query: 542 TTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTY 601
T+V+PC D+ ++PSV++ FV + + D +DV+G+C +++ + K N +
Sbjct: 268 TSVVPC--DDAQHLPSVQFDFVSISDLENTPKDSIVDVIGICKSYEDVTKIVVKANNREV 325
Query: 602 MKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG------------- 648
KR++ L+D S VT TLWG EAE FD S +PVIA+K ARVS+F G
Sbjct: 326 SKRNVHLMDTSGKLVTATLWGNEAEKFDGSRQPVIAIKGARVSDFGGRSLSVMSSSTVVV 385
Query: 649 ---------------------------------------NLLLMREIQDQQLGMGDKADY 669
N + E + ++LG GDKADY
Sbjct: 386 NPDSPEAFKLRGWFDSEGQLLECASISDVRGGSASGVNTNWKTLYEAKSERLGQGDKADY 445
Query: 670 CSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIG 729
S G I R N Y+ACPSQDCNKKVIDQ NG+YRCEKC++EF F YR++L V I
Sbjct: 446 FSCVGTIVHLRKENCMYQACPSQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMMLLVTIA 505
Query: 730 DWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHY 784
D + WVT FQ AE ILG +A +GE E + + A F Y F++R KLE Y
Sbjct: 506 DSLDYQWVTCFQESAEFILGQSATFLGELKEKNEQAFEEVFQNANFNTYEFKIRVKLETY 565
Query: 785 N 785
N
Sbjct: 566 N 566
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 145/326 (44%), Positives = 203/326 (62%), Gaps = 9/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+++++ NDYE++FT+ T+V+PC D+ ++PSV++ FV + + D +DV+G+
Sbjct: 249 ANKQYTAVKNDYEITFTNETSVVPC--DDAQHLPSVQFDFVSISDLENTPKDSIVDVIGI 306
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C +++ + K N + KR++ L+D S VT TLWG EAE FD S +PVIA+K AR
Sbjct: 307 CKSYEDVTKIVVKANNREVSKRNVHLMDTSGKLVTATLWGNEAEKFDGSRQPVIAIKGAR 366
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGMGGGAAGN 184
VS+F GG++LS+ SS + +NPD PE KL+GWF ++ +S GG G N
Sbjct: 367 VSDF-GGRSLSVMSSSTVVVNPDSPEAFKLRGWFDSEGQLLECASISDVRGGSASGVNTN 425
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ E + ++LG GDKADY S G I R N Y+ACPSQDCNKKVIDQ NG+YRCE
Sbjct: 426 WKTLYEAKSERLGQGDKADYFSCVGTIVHLRKENCMYQACPSQDCNKKVIDQQNGLYRCE 485
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PA 299
KC++EF F YR++L V I D + WVT FQ AE ILG +A +GE E +
Sbjct: 486 KCDREFPNFKYRMMLLVTIADSLDYQWVTCFQESAEFILGQSATFLGELKEKNEQAFEEV 545
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F Y F++R KLE YN +I
Sbjct: 546 FQNANFNTYEFKIRVKLETYNDESRI 571
>gi|355717104|gb|AES05824.1| replication protein A1, 70kDa [Mustela putorius furo]
Length = 615
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 213/541 (39%), Positives = 299/541 (55%), Gaps = 88/541 (16%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
DG+N S MLATQLN ++ + LS I QI R+IV+ + G R V+I++EL+I+K
Sbjct: 48 DGLNTLSSFMLATQLNPLVEEERLSSNCICQINRFIVNTLKDG----RRVVILMELDILK 103
Query: 387 PGTEIGFKIGNPQPLNTN----------------------TDNSSTQQTPAATNTNGSN- 423
+G KIGNP P N N S+ A+ T G++
Sbjct: 104 SAEAVGLKIGNPVPYNEGHGQQQVVPPPVSAANPPASKPPQQNGSSAMGSTASKTYGASK 163
Query: 424 --GVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFS 481
G ++ + V+ PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKLFS
Sbjct: 164 TFGKAGGTSLGNSSGGTQVKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFS 223
Query: 482 IDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHS 541
I+L+DESGEIRAT FN++ ++F +I+ +KVYYIS LK ANK+F+++ NDYEM+F +
Sbjct: 224 IELVDESGEIRATAFNEQVDKFFPLIDMNKVYYISKGILKIANKQFTAVKNDYEMTFNNE 283
Query: 542 TTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTY 601
T+V PC + ++P+V++ F + + D ID++G+C + + +T K+N +
Sbjct: 284 TSVTPCEDGH--HLPTVQFDFTGIGDLENKPKDSLIDIIGICKSYEDATKITVKSNNREV 341
Query: 602 MKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG------------- 648
KR+I L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G
Sbjct: 342 SKRNIYLMDMSGKVVTATLWGEDADRFDGSRQPVMAIKGARVSDFGGRSLSVLSSSTVIV 401
Query: 649 ---------------------------------------NLLLMREIQDQQLGMGDKADY 669
N + E + + LG GDKADY
Sbjct: 402 NPDIPEAYKLRGWFDSEGQALDGISISDVKSGGTGGINTNWKTLYEAKSENLGHGDKADY 461
Query: 670 CSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIG 729
S I R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF +F YR+IL V I
Sbjct: 462 FSSVATIVYLRKENCIYQACPTQDCNKKVIDQQNGLYRCEKCDSEFPSFKYRMILSVNIA 521
Query: 730 DWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHY 784
D+ + WVT FQ AE+I+G + +GE E + + A F +IFR+R KLE Y
Sbjct: 522 DFQENQWVTCFQESAEAIIGQSTAHLGELKEKNEQAFEEVFQNANFRSFIFRIRVKLETY 581
Query: 785 N 785
N
Sbjct: 582 N 582
Score = 272 bits (695), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 141/326 (43%), Positives = 203/326 (62%), Gaps = 9/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V PC + ++P+V++ F + + D ID++G+
Sbjct: 265 ANKQFTAVKNDYEMTFNNETSVTPCEDGH--HLPTVQFDFTGIGDLENKPKDSLIDIIGI 322
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T K+N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 323 CKSYEDATKITVKSNNREVSKRNIYLMDMSGKVVTATLWGEDADRFDGSRQPVMAIKGAR 382
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFE-PVSQRTGGMGGGAAGN 184
VS+F GG++LS+ SS + +NPDIPE +KL+GWF ++ +S G GG N
Sbjct: 383 VSDF-GGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQALDGISISDVKSGGTGGINTN 441
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ E + + LG GDKADY S I R N Y+ACP+QDCNKKVIDQ NG+YRCE
Sbjct: 442 WKTLYEAKSENLGHGDKADYFSSVATIVYLRKENCIYQACPTQDCNKKVIDQQNGLYRCE 501
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PA 299
KC+ EF +F YR+IL V I D+ + WVT FQ AE+I+G + +GE E +
Sbjct: 502 KCDSEFPSFKYRMILSVNIADFQENQWVTCFQESAEAIIGQSTAHLGELKEKNEQAFEEV 561
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F +IFR+R KLE YN +I
Sbjct: 562 FQNANFRSFIFRIRVKLETYNDESRI 587
>gi|332257541|ref|XP_003277864.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit
[Nomascus leucogenys]
Length = 616
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 209/543 (38%), Positives = 299/543 (55%), Gaps = 88/543 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ LS + QI RYIV+ + G R V+I++EL +
Sbjct: 46 MSDGLNTLSSFMLATQLNLLVEQEQLSSNCVCQINRYIVNTLKDG----RRVVILMELEV 101
Query: 385 IKPGTEIGFKIGNPQPLNTNT----------------------DNSSTQQTPAATNTNGS 422
+K +G KIGNP P N N S+ P + G+
Sbjct: 102 LKSAEAVGVKIGNPVPYNEGLGQPQVAPPAPAASPAASSRPQPQNGSSGAGPTVSKAYGA 161
Query: 423 NGVHNNVAIP---RQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
+ A P ++ + PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKL
Sbjct: 162 SKTFGKAAGPSLSHTSAGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKL 221
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FS++L+DESGEIRAT FN++ ++F +IE +KVYY S TLK ANK+F+++ NDYEM+F
Sbjct: 222 FSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFN 281
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
+ T+V+PC +D ++P+V++ F + + S D +D++G+C + + +T ++N +
Sbjct: 282 NETSVMPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNR 339
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL-------- 651
KR+I L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G L
Sbjct: 340 EVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTI 399
Query: 652 --------------------------------------------LMREIQDQQLGMGDKA 667
+ E++ + LG GDK
Sbjct: 400 IVNPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGANTNWKTLYEVKSENLGQGDKP 459
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF +F YR+IL V
Sbjct: 460 DYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPSFKYRMILSVN 519
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLE 782
I D+ + WVT FQ AE+ILG A +GE + + + A F +IFR+R K+E
Sbjct: 520 IADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVE 579
Query: 783 HYN 785
YN
Sbjct: 580 TYN 582
Score = 286 bits (731), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 142/328 (43%), Positives = 211/328 (64%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F + + S D +D++G+
Sbjct: 265 ANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGI 322
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T ++N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 323 CKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGAR 382
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + +NPDIPE +KL+GWF + + VS ++GG+GG A
Sbjct: 383 VSDF-GGRSLSVLSSSTIIVNPDIPEAYKLRGWFDAEGQA-LDGVSISDLKSGGVGG-AN 439
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 440 TNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 499
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC+ EF +F YR+IL V I D+ + WVT FQ AE+ILG A +GE + +
Sbjct: 500 CEKCDTEFPSFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFE 559
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F +IFR+R K+E YN +I
Sbjct: 560 EVFQNANFRSFIFRVRVKVETYNDESRI 587
>gi|301765316|ref|XP_002918075.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Ailuropoda melanoleuca]
Length = 603
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 212/546 (38%), Positives = 302/546 (55%), Gaps = 94/546 (17%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ + LS I QI R+IV+ + G R V+I++EL+I
Sbjct: 33 MSDGLNTLSSFMLATQLNPLVEEEQLSSNCICQINRFIVNTLKDG----RRVVILMELDI 88
Query: 385 IKPGTEIGFKIGNPQPLN----------------------------TNTDNSSTQQTPAA 416
+K +G KIGNP P N ++ S+T +T A
Sbjct: 89 LKSAEAVGLKIGNPVPYNEGHGQQQVVPSPVSAASAPANKPQQQNGSSAMGSTTSKTYGA 148
Query: 417 TNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGS 476
+ T G G ++ A V+ PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG
Sbjct: 149 SKTFGKAG---GTSLANSAGGTQVKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGE 205
Query: 477 GKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEM 536
GKLFSI+L+DESGEIRAT FN++ ++F +I+ +KVYYIS LK ANK+F+++ NDYEM
Sbjct: 206 GKLFSIELVDESGEIRATAFNEQVDKFFPLIDMNKVYYISKGILKIANKQFTAVKNDYEM 265
Query: 537 SFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKT 596
+F + T+V+PC + ++P+V++ F + + D ID++G+C + + +T K+
Sbjct: 266 TFNNETSVMPCEDGH--HLPTVQFDFTGIGDLENKPKDSLIDIIGICKSYEDATKITVKS 323
Query: 597 NQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG-------- 648
N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G
Sbjct: 324 NNREVSKRNIYLMDMSGKVVTATLWGEDADRFDGSRQPVMAIKGARVSDFGGRSLSVLSS 383
Query: 649 --------------------------------------------NLLLMREIQDQQLGMG 664
N + E++ + LG G
Sbjct: 384 STVIVNPDIPEAYKLRGWFDSEGQALDGVSISDLKSGGTGGSNTNWKTLYEVKSENLGHG 443
Query: 665 DKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLIL 724
DKADY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF F YR+IL
Sbjct: 444 DKADYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMIL 503
Query: 725 PVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----LKKALFTQYIFRLRA 779
V I D+ + WVT FQ AE+I+G + +GE + + + A F + FR+R
Sbjct: 504 SVNIADFQENQWVTCFQESAEAIIGQSTSYLGELKDKNEQAFEEIFQNANFRSFTFRIRV 563
Query: 780 KLEHYN 785
KLE YN
Sbjct: 564 KLETYN 569
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 138/326 (42%), Positives = 204/326 (62%), Gaps = 9/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC + ++P+V++ F + + D ID++G+
Sbjct: 252 ANKQFTAVKNDYEMTFNNETSVMPCEDGH--HLPTVQFDFTGIGDLENKPKDSLIDIIGI 309
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T K+N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 310 CKSYEDATKITVKSNNREVSKRNIYLMDMSGKVVTATLWGEDADRFDGSRQPVMAIKGAR 369
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGMGGGAAGN 184
VS+F GG++LS+ SS + +NPDIPE +KL+GWF ++ +S G GG+ N
Sbjct: 370 VSDF-GGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQALDGVSISDLKSGGTGGSNTN 428
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ E++ + LG GDKADY S + R N Y+ACP+QDCNKKVIDQ NG+YRCE
Sbjct: 429 WKTLYEVKSENLGHGDKADYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCE 488
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA----- 299
KC+ EF F YR+IL V I D+ + WVT FQ AE+I+G + +GE + +
Sbjct: 489 KCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAIIGQSTSYLGELKDKNEQAFEEI 548
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F + FR+R KLE YN +I
Sbjct: 549 FQNANFRSFTFRIRVKLETYNDESRI 574
>gi|332846842|ref|XP_511254.3| PREDICTED: replication protein A 70 kDa DNA-binding subunit [Pan
troglodytes]
gi|410218106|gb|JAA06272.1| replication protein A1, 70kDa [Pan troglodytes]
gi|410264556|gb|JAA20244.1| replication protein A1, 70kDa [Pan troglodytes]
gi|410300150|gb|JAA28675.1| replication protein A1, 70kDa [Pan troglodytes]
gi|410340247|gb|JAA39070.1| replication protein A1, 70kDa [Pan troglodytes]
Length = 616
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 211/543 (38%), Positives = 303/543 (55%), Gaps = 88/543 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ + LS + QI R+IV+ + G R V+I++EL +
Sbjct: 46 MSDGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDG----RRVVILMELEV 101
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNT---------NGSNGVHNNVAIPR-- 433
+K +G KIGNP P N A + NGS+GV + V+
Sbjct: 102 LKSAEAVGVKIGNPVPYNEGLGQPQVAPPAPAASPAASSRPQPQNGSSGVGSTVSKAYGA 161
Query: 434 -----QASAPVV---------QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
+A+ P + + PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKL
Sbjct: 162 SKTFGKAAGPSLSHTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKL 221
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FS++L+DESGEIRAT FN++ ++F +IE +KVYY S TLK ANK+F+++ NDYEM+F
Sbjct: 222 FSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFN 281
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
+ T+V+PC +D ++P+V++ F + + S D +D++G+C + + +T ++N +
Sbjct: 282 NETSVMPCEDDR--HLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNR 339
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL-------- 651
KR+I L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G L
Sbjct: 340 EVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTI 399
Query: 652 --------------------------------------------LMREIQDQQLGMGDKA 667
+ E++ + LG GDK
Sbjct: 400 IANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGSNTNWKTLYEVKSENLGQGDKP 459
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF F YR+IL V
Sbjct: 460 DYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVN 519
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLE 782
I D+ + WVT FQ AE+ILG A +GE + + + A F +IFR+R K+E
Sbjct: 520 IADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVE 579
Query: 783 HYN 785
YN
Sbjct: 580 TYN 582
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 141/328 (42%), Positives = 208/328 (63%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F + + S D +D++G+
Sbjct: 265 ANKQFTAVKNDYEMTFNNETSVMPCEDDR--HLPTVQFDFTGIDDLENKSKDSLVDIIGI 322
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T ++N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 323 CKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGAR 382
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + NPDIPE +KL+GWF + + VS ++GG+GG
Sbjct: 383 VSDF-GGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQA-LDGVSISDLKSGGVGGSNT 440
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 441 -NWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 499
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG A +GE + +
Sbjct: 500 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFE 559
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F +IFR+R K+E YN +I
Sbjct: 560 EVFQNANFRSFIFRVRVKVETYNDESRI 587
>gi|397491957|ref|XP_003816902.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit [Pan
paniscus]
Length = 616
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 211/543 (38%), Positives = 303/543 (55%), Gaps = 88/543 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ + LS + QI R+IV+ + G R V+I++EL +
Sbjct: 46 MSDGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDG----RRVVILMELEV 101
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNT---------NGSNGVHNNVAIPR-- 433
+K +G KIGNP P N A + NGS+GV + V+
Sbjct: 102 LKSAEAVGVKIGNPVPYNEGLGQPQVAPPAPAASPAASSRPQPQNGSSGVGSTVSKAYGA 161
Query: 434 -----QASAPVV---------QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
+A+ P + + PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKL
Sbjct: 162 SKTFGKATGPSLSHTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKL 221
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FS++L+DESGEIRAT FN++ ++F +IE +KVYY S TLK ANK+F+++ NDYEM+F
Sbjct: 222 FSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFN 281
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
+ T+V+PC +D ++P+V++ F + + S D +D++G+C + + +T ++N +
Sbjct: 282 NETSVMPCEDDR--HLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNR 339
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL-------- 651
KR+I L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G L
Sbjct: 340 EVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTI 399
Query: 652 --------------------------------------------LMREIQDQQLGMGDKA 667
+ E++ + LG GDK
Sbjct: 400 IANPDIPEAYKLRGWFDSEGQALDGVSISDLKSGGVGGSNTNWKTLYEVKSENLGQGDKP 459
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF F YR+IL V
Sbjct: 460 DYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVN 519
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLE 782
I D+ + WVT FQ AE+ILG A +GE + + + A F +IFR+R K+E
Sbjct: 520 IADFQENQWVTCFQESAEAILGHNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVE 579
Query: 783 HYN 785
YN
Sbjct: 580 TYN 582
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 141/328 (42%), Positives = 209/328 (63%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F + + S D +D++G+
Sbjct: 265 ANKQFTAVKNDYEMTFNNETSVMPCEDDR--HLPTVQFDFTGIDDLENKSKDSLVDIIGI 322
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T ++N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 323 CKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGAR 382
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + NPDIPE +KL+GWF ++ + VS ++GG+GG
Sbjct: 383 VSDF-GGRSLSVLSSSTIIANPDIPEAYKLRGWFDSEGQA-LDGVSISDLKSGGVGGSNT 440
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 441 -NWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 499
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG A +GE + +
Sbjct: 500 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGHNAAYLGELKDKNEQAFE 559
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F +IFR+R K+E YN +I
Sbjct: 560 EVFQNANFRSFIFRVRVKVETYNDESRI 587
>gi|291405375|ref|XP_002719090.1| PREDICTED: replication protein A1 [Oryctolagus cuniculus]
Length = 613
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 210/543 (38%), Positives = 297/543 (54%), Gaps = 88/543 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ + LS I Q+ R+IV+ + G R V+I++E+ +
Sbjct: 43 MSDGLNTLSSFMLATQLNPLVEEERLSSNCICQVNRFIVNTLKDG----RRVVILMEVEV 98
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNT---------NGSNGVHNNV------ 429
+K +G KIGNP P N P + NGS G+ V
Sbjct: 99 LKSAEAVGMKIGNPVPYNEGHGQQQALPPPVTAASAPASKPQQQNGSAGMGPPVSKSFGA 158
Query: 430 --AIPRQASAPVVQTH--------PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
A + + ++ T PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKL
Sbjct: 159 SKAFGKSGGSSLLNTAGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKL 218
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FSI+L+DESGEIRAT FN++ ++F +IE +KVYY S TLK ANK+F+++ NDYEM+F
Sbjct: 219 FSIELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFV 278
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
+ T+V+PC + ++P+V++ F + + D +D++G+C + + +T K+N +
Sbjct: 279 NETSVMPCEDGH--HLPTVQFAFTGIDALENKPKDSLVDIIGICKSYEDATKITVKSNNR 336
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG----------- 648
KR+I L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G
Sbjct: 337 EVAKRNIYLMDTSGKVVTATLWGEDADRFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTV 396
Query: 649 -----------------------------------------NLLLMREIQDQQLGMGDKA 667
N + E++ + LG GDKA
Sbjct: 397 IVNPDIPEAYKLRGWFDSEGQALDGVSISDLKSGGMGGSNTNWKTLYEVKSENLGQGDKA 456
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF F YR+IL V
Sbjct: 457 DYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVN 516
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLE 782
I D+ + WVT FQ AE+ILG +GE E + + A F + FR+R KLE
Sbjct: 517 IADFQENQWVTCFQESAEAILGQNTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLE 576
Query: 783 HYN 785
YN
Sbjct: 577 TYN 579
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 142/328 (43%), Positives = 207/328 (63%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC + ++P+V++ F + + D +D++G+
Sbjct: 262 ANKQFTAVKNDYEMTFVNETSVMPCEDGH--HLPTVQFAFTGIDALENKPKDSLVDIIGI 319
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T K+N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 320 CKSYEDATKITVKSNNREVAKRNIYLMDTSGKVVTATLWGEDADRFDGSRQPVLAIKGAR 379
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + +NPDIPE +KL+GWF ++ + VS ++GGMGG
Sbjct: 380 VSDF-GGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQA-LDGVSISDLKSGGMGGSNT 437
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E++ + LG GDKADY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 438 -NWKTLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 496
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG +GE E +
Sbjct: 497 CEKCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNTAYLGELKEKNEQAFE 556
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F + FR+R KLE YN +I
Sbjct: 557 EVFQNANFRSFTFRIRVKLETYNDESRI 584
>gi|390462862|ref|XP_002747872.2| PREDICTED: replication protein A 70 kDa DNA-binding subunit
[Callithrix jacchus]
Length = 672
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 209/545 (38%), Positives = 304/545 (55%), Gaps = 92/545 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ G L+ + Q+ R+IV+ + G R V+I++EL +
Sbjct: 102 MSDGLNTLSSFMLATQLNTLVEQGQLASNCVCQVNRFIVNTLKDG----RRVVILMELEV 157
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNT---------NGSNGVHNNVAIPR-- 433
+K +G KIGNP P N P + NGS+GV + +P+
Sbjct: 158 LKSAEAVGVKIGNPVPYNEGHGQQQVAPPPVPAASPASSKPQPQNGSSGVGS--TLPKAY 215
Query: 434 -------QASAPVVQTH---------PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSG 477
+A P + + PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG G
Sbjct: 216 GASKTFGKAGGPSLSSTSGGTQAKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEG 275
Query: 478 KLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMS 537
KLFS++L+DES EIRAT FN++ ++F +IE +KVYY S TLK ANK+F+++ NDYEM+
Sbjct: 276 KLFSLELVDESAEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMT 335
Query: 538 FTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTN 597
F + T+V+PC +D ++P+V++ F + + S D +D++G+C + + +T ++N
Sbjct: 336 FNNETSVMPCEDDH--HLPTVQFDFTGIDNLESKSKDSLVDIIGICKSYEDATKITVRSN 393
Query: 598 QKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL------ 651
+ KR+I L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G L
Sbjct: 394 NREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSS 453
Query: 652 ----------------------------------------------LMREIQDQQLGMGD 665
+ E++ + LG GD
Sbjct: 454 TIIVNPDIPEAYKLRGWFDSEGQALDGVSISDLKSGGLGGSSTNWKTLYEVKSENLGQGD 513
Query: 666 KADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILP 725
K DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF +F YR+IL
Sbjct: 514 KPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPSFKYRMILS 573
Query: 726 VMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAK 780
V I D+ + WVT FQ AE+ILG +A +GE + + + A F +IFR+R K
Sbjct: 574 VNIADFQENQWVTCFQESAEAILGQSAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVK 633
Query: 781 LEHYN 785
+E YN
Sbjct: 634 VETYN 638
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 141/328 (42%), Positives = 213/328 (64%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F + + S D +D++G+
Sbjct: 321 ANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFTGIDNLESKSKDSLVDIIGI 378
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T ++N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 379 CKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGAR 438
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + +NPDIPE +KL+GWF ++ + VS ++GG+GG +
Sbjct: 439 VSDF-GGRSLSVLSSSTIIVNPDIPEAYKLRGWFDSEGQA-LDGVSISDLKSGGLGGSST 496
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 497 -NWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 555
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC+ EF +F YR+IL V I D+ + WVT FQ AE+ILG +A +GE + +
Sbjct: 556 CEKCDTEFPSFKYRMILSVNIADFQENQWVTCFQESAEAILGQSAAYLGELKDKNEQAFE 615
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F +IFR+R K+E YN +I
Sbjct: 616 EVFQNANFRSFIFRVRVKVETYNDESRI 643
>gi|332018503|gb|EGI59093.1| Replication protein A 70 kDa DNA-binding subunit [Acromyrmex
echinatior]
Length = 608
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 216/522 (41%), Positives = 306/522 (58%), Gaps = 65/522 (12%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DG +NSF MLATQLN++IT+ L++F I +I Y +S V++ S + V++IL + +
Sbjct: 49 ISDGQKLNSFTMLATQLNNLITENILNDFAICKITNYHMSSVNN-SGKEKRVMLILGIEV 107
Query: 385 IKPGTEIGFKIGNPQPLNTNTD-----NSSTQQTPAATNTNGSNGVHNNVAIPRQASAPV 439
+ PG ++G KIGNP + ++ S++ T AT ++ NG N Q S+ +
Sbjct: 108 LVPGDQVGNKIGNPTNIEMKSEPESTSTSTSTCTSKATTSHYQNGSARNATSNYQPSSDI 167
Query: 440 VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE 499
T PI +LSPYQNKW IK RVTNK+PI+ W+N+RG GKLFS+DL+DESGEIR T F D+
Sbjct: 168 YTT-PIAALSPYQNKWVIKVRVTNKSPIKTWSNSRGEGKLFSMDLIDESGEIRCTAFRDQ 226
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK 559
C +F+DMIE VYYIS CTLK ANK+F ++ NDYEM+ T T +IPC+E+ ++P+++
Sbjct: 227 CEKFYDMIETGNVYYISRCTLKAANKQFCTLKNDYEMTMTGDTEIIPCHENS-DDIPTLQ 285
Query: 560 YCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
+ F P+ I ++ +DVLGV ++ + +T + +KRDI +VD S V +T
Sbjct: 286 FDFCPISQIESKEKNDLLDVLGVVTTFNDVQQIIQRTTGRELLKRDINIVDDSGTMVCVT 345
Query: 620 LWGKEAETFDASNKPVIAVKAARVSEFQG--NLLLMR----------------------- 654
LWGK+AE FD SN P+IA+K ARV EF G NL L+
Sbjct: 346 LWGKQAEDFDGSNNPIIAIKGARVGEFNGGKNLSLLHSSVFEKDPDLPEAHRLRGWYTAV 405
Query: 655 --------------------------EIQDQQLGMG-DKADYCSVRGIIQVFRGSNTTYK 687
E + +LG + AD +V I + R N YK
Sbjct: 406 GHSENIKSLSKTGGGGDFNAPLYTFEEATEARLGEKMNLADSFTVVATINMIRVENAIYK 465
Query: 688 ACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESI 747
ACP + C KK+IDQ+ G++RCEKCNK++ YRL+ + I D T S W+T F +AE I
Sbjct: 466 ACPVESCKKKLIDQSTGVFRCEKCNKDYPNSIYRLLASMNIVDATGSRWITAFSEDAEKI 525
Query: 748 LGVTAQEVGESTE-DHPA----LKKALFTQYIFRLRAKLEHY 784
LG++AQE+GE E D+ A +A F ++IF LRAK E +
Sbjct: 526 LGMSAQELGELKENDNDAFLQKFGEASFKKFIFTLRAKSEVF 567
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 137/326 (42%), Positives = 199/326 (61%), Gaps = 8/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F ++ NDYEM+ T T +IPC+E+ ++P++++ F P+ I ++ +DVLGV
Sbjct: 250 ANKQFCTLKNDYEMTMTGDTEIIPCHENS-DDIPTLQFDFCPISQIESKEKNDLLDVLGV 308
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
++ + +T + +KRDI +VD S V +TLWGK+AE FD SN P+IA+K AR
Sbjct: 309 VTTFNDVQQIIQRTTGRELLKRDINIVDDSGTMVCVTLWGKQAEDFDGSNNPIIAIKGAR 368
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
V EF GGK LSL SSV +PD+PE H+L+GW++ ++ +TGG GG L
Sbjct: 369 VGEFNGGKNLSLLHSSVFEKDPDLPEAHRLRGWYTAVGHSENIKSLSKTGG-GGDFNAPL 427
Query: 186 LLMREIQDQQLGMG-DKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
E + +LG + AD +V I + R N YKACP + C KK+IDQ+ G++RCE
Sbjct: 428 YTFEEATEARLGEKMNLADSFTVVATINMIRVENAIYKACPVESCKKKLIDQSTGVFRCE 487
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPA---- 299
KCNK++ YRL+ + I D T S W+T F +AE ILG++AQE+GE E D+ A
Sbjct: 488 KCNKDYPNSIYRLLASMNIVDATGSRWITAFSEDAEKILGMSAQELGELKENDNDAFLQK 547
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+A F ++IF LRAK E + +I
Sbjct: 548 FGEASFKKFIFTLRAKSEVFQDEMRI 573
>gi|168277810|dbj|BAG10883.1| replication protein A 70 kDa DNA-binding subunit [synthetic
construct]
Length = 616
Score = 381 bits (978), Expect = e-102, Method: Compositional matrix adjust.
Identities = 210/543 (38%), Positives = 303/543 (55%), Gaps = 88/543 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ + LS + QI R+IV+ + G R V+I++EL +
Sbjct: 46 MSDGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDG----RRVVILMELEV 101
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNT---------NGSNGVHNNVAIPR-- 433
+K +G KIGNP P N A + NGS+G+ + V+
Sbjct: 102 LKSAEAVGVKIGNPVPYNEGLGQPQVAPPAPAASPAASSRPQPQNGSSGMGSTVSKAYGA 161
Query: 434 -----QASAPVV---------QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
+A+ P + + PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKL
Sbjct: 162 SKTFGKAAGPSLSHTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKL 221
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FS++L+DESGEIRAT FN++ ++F +IE +KVYY S TLK ANK+F+++ NDYEM+F
Sbjct: 222 FSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFN 281
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
+ T+V+PC +D ++P+V++ F + + S D +D++G+C + + +T ++N +
Sbjct: 282 NETSVMPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNR 339
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL-------- 651
KR+I L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G L
Sbjct: 340 EVAKRNIYLMDASGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTI 399
Query: 652 --------------------------------------------LMREIQDQQLGMGDKA 667
+ E++ + LG GDK
Sbjct: 400 IANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGSNTNWKTLYEVKSENLGQGDKP 459
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF F YR+IL V
Sbjct: 460 DYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVN 519
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLE 782
I D+ + WVT FQ AE+ILG A +GE + + + A F +IFR+R K+E
Sbjct: 520 IADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVE 579
Query: 783 HYN 785
YN
Sbjct: 580 TYN 582
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 141/328 (42%), Positives = 208/328 (63%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F + + S D +D++G+
Sbjct: 265 ANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGI 322
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T ++N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 323 CKSYEDATKITVRSNNREVAKRNIYLMDASGKVVTATLWGEDADKFDGSRQPVLAIKGAR 382
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + NPDIPE +KL+GWF + + VS ++GG+GG
Sbjct: 383 VSDF-GGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQA-LDGVSISDLKSGGVGGSNT 440
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 441 -NWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 499
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG A +GE + +
Sbjct: 500 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFE 559
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F +IFR+R K+E YN +I
Sbjct: 560 EVFQNANFRSFIFRVRVKVETYNDESRI 587
>gi|62089044|dbj|BAD92969.1| replication protein A1, 70kDa variant [Homo sapiens]
Length = 630
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 210/543 (38%), Positives = 303/543 (55%), Gaps = 88/543 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ + LS + QI R+IV+ + G R V+I++EL +
Sbjct: 60 MSDGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDG----RRVVILMELEV 115
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNT---------NGSNGVHNNVAIPR-- 433
+K +G KIGNP P N A + NGS+G+ + V+
Sbjct: 116 LKSAEAVGVKIGNPVPYNEGLGQPQVAPPAPAASPAASSRPQPQNGSSGMGSTVSKAYGA 175
Query: 434 -----QASAPVV---------QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
+A+ P + + PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKL
Sbjct: 176 SKTFGKAAGPSLSHTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKL 235
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FS++L+DESGEIRAT FN++ ++F +IE +KVYY S TLK ANK+F+++ NDYEM+F
Sbjct: 236 FSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFN 295
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
+ T+V+PC +D ++P+V++ F + + S D +D++G+C + + +T ++N +
Sbjct: 296 NETSVMPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNR 353
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL-------- 651
KR+I L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G L
Sbjct: 354 EVAKRNIYLMDASGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTI 413
Query: 652 --------------------------------------------LMREIQDQQLGMGDKA 667
+ E++ + LG GDK
Sbjct: 414 IANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGSNTNWKTLYEVKSENLGQGDKP 473
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF F YR+IL V
Sbjct: 474 DYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVN 533
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLE 782
I D+ + WVT FQ AE+ILG A +GE + + + A F +IFR+R K+E
Sbjct: 534 IADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVE 593
Query: 783 HYN 785
YN
Sbjct: 594 TYN 596
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 141/328 (42%), Positives = 208/328 (63%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F + + S D +D++G+
Sbjct: 279 ANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGI 336
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T ++N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 337 CKSYEDATKITVRSNNREVAKRNIYLMDASGKVVTATLWGEDADKFDGSRQPVLAIKGAR 396
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + NPDIPE +KL+GWF + + VS ++GG+GG
Sbjct: 397 VSDF-GGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQA-LDGVSISDLKSGGVGGSNT 454
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 455 -NWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 513
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG A +GE + +
Sbjct: 514 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFE 573
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F +IFR+R K+E YN +I
Sbjct: 574 EVFQNANFRSFIFRVRVKVETYNDESRI 601
>gi|4506583|ref|NP_002936.1| replication protein A 70 kDa DNA-binding subunit [Homo sapiens]
gi|1350579|sp|P27694.2|RFA1_HUMAN RecName: Full=Replication protein A 70 kDa DNA-binding subunit;
Short=RP-A p70; AltName: Full=Replication factor A
protein 1; Short=RF-A protein 1; AltName:
Full=Single-stranded DNA-binding protein
gi|337489|gb|AAA36584.1| replication protein A, 70-kDa subunit [Homo sapiens]
gi|17390283|gb|AAH18126.1| Replication protein A1, 70kDa [Homo sapiens]
gi|46430939|gb|AAS94324.1| replication protein A1, 70kDa [Homo sapiens]
gi|119610980|gb|EAW90574.1| replication protein A1, 70kDa [Homo sapiens]
gi|158260431|dbj|BAF82393.1| unnamed protein product [Homo sapiens]
gi|313883656|gb|ADR83314.1| replication protein A1, 70kDa [synthetic construct]
Length = 616
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 210/543 (38%), Positives = 303/543 (55%), Gaps = 88/543 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ + LS + QI R+IV+ + G R V+I++EL +
Sbjct: 46 MSDGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDG----RRVVILMELEV 101
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNT---------NGSNGVHNNVAIPR-- 433
+K +G KIGNP P N A + NGS+G+ + V+
Sbjct: 102 LKSAEAVGVKIGNPVPYNEGLGQPQVAPPAPAASPAASSRPQPQNGSSGMGSTVSKAYGA 161
Query: 434 -----QASAPVV---------QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
+A+ P + + PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKL
Sbjct: 162 SKTFGKAAGPSLSHTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKL 221
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FS++L+DESGEIRAT FN++ ++F +IE +KVYY S TLK ANK+F+++ NDYEM+F
Sbjct: 222 FSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFN 281
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
+ T+V+PC +D ++P+V++ F + + S D +D++G+C + + +T ++N +
Sbjct: 282 NETSVMPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNR 339
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL-------- 651
KR+I L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G L
Sbjct: 340 EVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTI 399
Query: 652 --------------------------------------------LMREIQDQQLGMGDKA 667
+ E++ + LG GDK
Sbjct: 400 IANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGSNTNWKTLYEVKSENLGQGDKP 459
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF F YR+IL V
Sbjct: 460 DYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVN 519
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLE 782
I D+ + WVT FQ AE+ILG A +GE + + + A F +IFR+R K+E
Sbjct: 520 IADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVE 579
Query: 783 HYN 785
YN
Sbjct: 580 TYN 582
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 141/328 (42%), Positives = 208/328 (63%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F + + S D +D++G+
Sbjct: 265 ANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGI 322
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T ++N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 323 CKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGAR 382
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + NPDIPE +KL+GWF + + VS ++GG+GG
Sbjct: 383 VSDF-GGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQA-LDGVSISDLKSGGVGGSNT 440
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 441 -NWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 499
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG A +GE + +
Sbjct: 500 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFE 559
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F +IFR+R K+E YN +I
Sbjct: 560 EVFQNANFRSFIFRVRVKVETYNDESRI 587
>gi|91094635|ref|XP_970093.1| PREDICTED: similar to replication protein A 70 kDa DNA-binding
subunit [Tribolium castaneum]
gi|270016445|gb|EFA12891.1| hypothetical protein TcasGA2_TC004405 [Tribolium castaneum]
Length = 591
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 196/501 (39%), Positives = 294/501 (58%), Gaps = 73/501 (14%)
Query: 350 LSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKIGNPQPLNTNTDNSS 409
+ +F+I+++K+++ S +S+ + +L+I++ I+ PG +IG KIG P L S
Sbjct: 66 VEDFSIIKLKKFVKSEISNAKGPQK-ILLIIDSEIVTPGHQIGVKIGEPVTLTDEIIASE 124
Query: 410 TQQTPAATNTNGSNGVHNNVAIPR--------QASAPVVQTHPIVSLSPYQNKWTIKARV 461
T TP + + V P+ Q+ + + I +L+PY NKW IKARV
Sbjct: 125 TSSTPKVSTSEPP------VKQPKSEQSTSLNQSISETRVLNQINALTPYHNKWVIKARV 178
Query: 462 TNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLK 521
TNK+ +R W+N+RG GKLFS DL+D+SGEIR T F D +++ + ++ DKVYYIS C LK
Sbjct: 179 TNKSDMRTWSNSRGEGKLFSFDLMDDSGEIRCTAFRDMADKYFNYLQVDKVYYISKCQLK 238
Query: 522 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 581
ANK+F+++ N+YEM+ + T + C D+ G++P VKY FVP+ +AE +DV+G
Sbjct: 239 AANKQFNTLKNEYEMTIGNETIIEECLTDD-GHVPQVKYNFVPISALAEKEVGNLVDVIG 297
Query: 582 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 641
+C +A+E+ + T K+ + KR+ITLVDQS+ S+ +TLWG +A++FDA+N PV+ +K A
Sbjct: 298 ICKEASEVQTFTSKSTNRELRKREITLVDQSKTSIALTLWGSQADSFDATNNPVVVIKGA 357
Query: 642 RVSEFQG--NL------------------------------------------------- 650
+V EF G NL
Sbjct: 358 KVGEFGGGKNLSTLMSSQIKLNPDIPECHRIKGWYDSEGQYDAMTNLSERVGGVGSFQTA 417
Query: 651 -LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 709
+ ++E+QD+ LG +K DY V+ I + R N YKACP+ DCNKKV+D NGMYRCE
Sbjct: 418 WMSLKEVQDKGLGHSEKGDYFQVKATILLVRSENALYKACPTDDCNKKVVDLENGMYRCE 477
Query: 710 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKAL 769
KC +EF F YRL++ + IGD++ + WV++F +EAE ILG TAQE+G + D A+
Sbjct: 478 KCCREFPNFKYRLLVSMNIGDFSGNQWVSVFSSEAEKILGKTAQEIGLTMRDDSEAGTAI 537
Query: 770 -----FTQYIFRLRAKLEHYN 785
F Q+IF+ RAK+E+YN
Sbjct: 538 FQAANFKQFIFKCRAKMENYN 558
Score = 316 bits (810), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 147/326 (45%), Positives = 220/326 (67%), Gaps = 8/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ N+YEM+ + T + C D+ G++P VKY FVP+ +AE +DV+G+
Sbjct: 240 ANKQFNTLKNEYEMTIGNETIIEECLTDD-GHVPQVKYNFVPISALAEKEVGNLVDVIGI 298
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C +A+E+ + T K+ + KR+ITLVDQS+ S+ +TLWG +A++FDA+N PV+ +K A+
Sbjct: 299 CKEASEVQTFTSKSTNRELRKREITLVDQSKTSIALTLWGSQADSFDATNNPVVVIKGAK 358
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTN-TRFEPVSQRTGGMGGGAAGN 184
V EF GGK LS MSS + LNPDIPECH+++GW+ ++ +S+R GG+G
Sbjct: 359 VGEFGGGKNLSTLMSSQIKLNPDIPECHRIKGWYDSEGQYDAMTNLSERVGGVGSFQTA- 417
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ ++E+QD+ LG +K DY V+ I + R N YKACP+ DCNKKV+D NGMYRCE
Sbjct: 418 WMSLKEVQDKGLGHSEKGDYFQVKATILLVRSENALYKACPTDDCNKKVVDLENGMYRCE 477
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKAL 304
KC +EF F YRL++ + IGD++ + WV++F +EAE ILG TAQE+G + D A+
Sbjct: 478 KCCREFPNFKYRLLVSMNIGDFSGNQWVSVFSSEAEKILGKTAQEIGLTMRDDSEAGTAI 537
Query: 305 -----FTQYIFRLRAKLEHYNGTKKI 325
F Q+IF+ RAK+E+YN +++
Sbjct: 538 FQAANFKQFIFKCRAKMENYNDEQRL 563
>gi|387539408|gb|AFJ70331.1| replication protein A 70 kDa DNA-binding subunit [Macaca mulatta]
Length = 616
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 211/543 (38%), Positives = 300/543 (55%), Gaps = 88/543 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ LS I QI R+IV+ + G R V+I++EL +
Sbjct: 46 MSDGLNTLSSFMLATQLNPLVEQERLSSNCICQIHRFIVNTLKDG----RRVVILMELEV 101
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAAT---------NTNGSNGVHNNVAIPRQA 435
+K +G KIGNP P N +A +GS+G + V+ A
Sbjct: 102 LKSAEAVGVKIGNPVPYNEGHGQPQAAPPASAGSPAASSKPQQQHGSSGAGSTVSKAYGA 161
Query: 436 S-------APVV---------QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
S P + + PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKL
Sbjct: 162 SKTFGKAGGPSLSNTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKL 221
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FS++L+DESGEIRAT FN++ ++F +IE +KVYY S TLK ANK+F+++ NDYEM+F
Sbjct: 222 FSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFN 281
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
+ T+V+PC +D ++P+V++ F + + S D +D++G+C + + +T ++N +
Sbjct: 282 NETSVMPCEDDR--HLPTVQFDFTGIDDLESKSKDSLVDIIGICKSYEDATKITVRSNNR 339
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL-------- 651
KR+I L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G L
Sbjct: 340 EVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTI 399
Query: 652 --------------------------------------------LMREIQDQQLGMGDKA 667
+ E++ + LG GDK
Sbjct: 400 IANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGGNTNWKTLYEVKSENLGQGDKP 459
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF F YR+IL V
Sbjct: 460 DYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVN 519
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLE 782
I D+ + WVT FQ AE+ILG A +GE + + + A F +IFR+R K+E
Sbjct: 520 IADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVE 579
Query: 783 HYN 785
YN
Sbjct: 580 TYN 582
Score = 286 bits (731), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 142/328 (43%), Positives = 209/328 (63%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F + + S D +D++G+
Sbjct: 265 ANKQFTAVKNDYEMTFNNETSVMPCEDDR--HLPTVQFDFTGIDDLESKSKDSLVDIIGI 322
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T ++N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 323 CKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGAR 382
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + NPDIPE +KL+GWF + + VS ++GG+GGG
Sbjct: 383 VSDF-GGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQA-LDGVSISDLKSGGVGGGNT 440
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 441 -NWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 499
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG A +GE + +
Sbjct: 500 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFE 559
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F +IFR+R K+E YN +I
Sbjct: 560 EVFQNANFRSFIFRVRVKVETYNDESRI 587
>gi|311268067|ref|XP_003131870.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit [Sus
scrofa]
Length = 616
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 211/543 (38%), Positives = 304/543 (55%), Gaps = 88/543 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ + LS I QI R+IV+ + G R V+I+++L +
Sbjct: 46 MSDGLNTLSSFMLATQLNPLVEEERLSSNCICQINRFIVNTLKDG----RRVVILMDLEV 101
Query: 385 IKPGTEIGFKIGNPQPLNTN---------TDNSSTQQTPAATNTNGSNGVHNNVAIPRQA 435
+K +G KIGNP P N ++++ T NGS+GV + V+ A
Sbjct: 102 LKSAEAVGVKIGNPVPYNEGHGQQPVVPPPVSAASPPTSNPQQQNGSSGVGSTVSKAYGA 161
Query: 436 S--------APVVQTH--------PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
S VV + PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKL
Sbjct: 162 SKIFGKAGATSVVNSSGGTQAKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKL 221
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FSI+L+DESGEIRAT FN++ ++F +I+ +KVYY S TLK ANK+F+++ NDYEM+F+
Sbjct: 222 FSIELVDESGEIRATAFNEQVDKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFS 281
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
+ T+V+PC + ++P+V++ F + + S D +D++G+C + +++ +T K+ +
Sbjct: 282 NETSVMPCEDGH--HLPTVQFDFTGIADLENKSKDSLVDIIGICKNYEDVTKITVKSTNR 339
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG----------- 648
KR+I L+D S V TLWG++A+ FD S +PV+A+K ARVS+F G
Sbjct: 340 EVSKRNIYLMDMSGKVVNATLWGEDADKFDGSRQPVMAIKGARVSDFGGRSLSILSSSTV 399
Query: 649 -----------------------------------------NLLLMREIQDQQLGMGDKA 667
N + E++ + LG GDK
Sbjct: 400 IVNPDIPEAYKLRGWFDSEGQALDGVSISDLKSGGIGGSNTNWKTLYEVKSENLGQGDKP 459
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF F YR+IL V
Sbjct: 460 DYFSAVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVN 519
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLE 782
I D+ + WVT FQ AE+ILG + +GE E + + A F + FR+R KLE
Sbjct: 520 IADFQENQWVTCFQESAEAILGQSTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLE 579
Query: 783 HYN 785
YN
Sbjct: 580 TYN 582
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 139/328 (42%), Positives = 209/328 (63%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F++ T+V+PC + ++P+V++ F + + S D +D++G+
Sbjct: 265 ANKQFTAVKNDYEMTFSNETSVMPCEDGH--HLPTVQFDFTGIADLENKSKDSLVDIIGI 322
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + +++ +T K+ + KR+I L+D S V TLWG++A+ FD S +PV+A+K AR
Sbjct: 323 CKNYEDVTKITVKSTNREVSKRNIYLMDMSGKVVNATLWGEDADKFDGSRQPVMAIKGAR 382
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + +NPDIPE +KL+GWF ++ + VS ++GG+GG
Sbjct: 383 VSDF-GGRSLSILSSSTVIVNPDIPEAYKLRGWFDSEGQA-LDGVSISDLKSGGIGGSNT 440
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 441 -NWKTLYEVKSENLGQGDKPDYFSAVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 499
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG + +GE E +
Sbjct: 500 CEKCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQSTAYLGELKEKNEQAFE 559
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F + FR+R KLE YN +I
Sbjct: 560 EVFQNANFRSFTFRIRVKLETYNDESRI 587
>gi|380815388|gb|AFE79568.1| replication protein A 70 kDa DNA-binding subunit [Macaca mulatta]
gi|383420567|gb|AFH33497.1| replication protein A 70 kDa DNA-binding subunit [Macaca mulatta]
gi|384943584|gb|AFI35397.1| replication protein A 70 kDa DNA-binding subunit [Macaca mulatta]
Length = 616
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 211/543 (38%), Positives = 300/543 (55%), Gaps = 88/543 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ LS I QI R+IV+ + G R V+I++EL +
Sbjct: 46 MSDGLNTLSSFMLATQLNPLVEQERLSSNCICQIHRFIVNTLKDG----RRVVILMELEV 101
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAAT---------NTNGSNGVHNNVAIPRQA 435
+K +G KIGNP P N +A +GS+G + V+ A
Sbjct: 102 LKSAEAVGVKIGNPVPYNEGHGQPQAAPPASAGSPAASSKPQQQHGSSGAGSTVSKAYGA 161
Query: 436 S-------APVV---------QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
S P + + PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKL
Sbjct: 162 SKTFGKAGGPSLSNTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKL 221
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FS++L+DESGEIRAT FN++ ++F +IE +KVYY S TLK ANK+F+++ NDYEM+F
Sbjct: 222 FSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFN 281
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
+ T+V+PC +D ++P+V++ F + + S D +D++G+C + + +T ++N +
Sbjct: 282 NETSVMPCEDDR--HLPTVQFDFTGIDDLESKSKDSLVDIIGICKSYEDATKITVRSNNR 339
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL-------- 651
KR+I L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G L
Sbjct: 340 EVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTI 399
Query: 652 --------------------------------------------LMREIQDQQLGMGDKA 667
+ E++ + LG GDK
Sbjct: 400 IVNPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGGNTNWKTLYEVKSENLGQGDKP 459
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF F YR+IL V
Sbjct: 460 DYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVN 519
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLE 782
I D+ + WVT FQ AE+ILG A +GE + + + A F +IFR+R K+E
Sbjct: 520 IADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVE 579
Query: 783 HYN 785
YN
Sbjct: 580 TYN 582
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 142/328 (43%), Positives = 210/328 (64%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F + + S D +D++G+
Sbjct: 265 ANKQFTAVKNDYEMTFNNETSVMPCEDDR--HLPTVQFDFTGIDDLESKSKDSLVDIIGI 322
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T ++N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 323 CKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGAR 382
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + +NPDIPE +KL+GWF + + VS ++GG+GGG
Sbjct: 383 VSDF-GGRSLSVLSSSTIIVNPDIPEAYKLRGWFDAEGQA-LDGVSISDLKSGGVGGGNT 440
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 441 -NWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 499
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG A +GE + +
Sbjct: 500 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFE 559
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F +IFR+R K+E YN +I
Sbjct: 560 EVFQNANFRSFIFRVRVKVETYNDESRI 587
>gi|402898208|ref|XP_003912118.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit [Papio
anubis]
Length = 616
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 210/543 (38%), Positives = 300/543 (55%), Gaps = 88/543 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ LS + QI R+IV+ + G R V+I++EL +
Sbjct: 46 MSDGLNTLSSFMLATQLNPLVEQERLSSNCVCQIHRFIVNTLKDG----RRVVILMELEV 101
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAAT---------NTNGSNGVHNNVAIPRQA 435
+K +G KIGNP P N +A +GS+G + V+ A
Sbjct: 102 LKSAEAVGVKIGNPVPYNEGHGQPQAAPPASAGSPAASSKPQQQHGSSGAGSTVSKAYGA 161
Query: 436 S-------APVV---------QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
S P + + PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKL
Sbjct: 162 SKTFGKAGGPSLSNTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKL 221
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FS++L+DESGEIRAT FN++ ++F +IE +KVYY S TLK ANK+F+++ NDYEM+F
Sbjct: 222 FSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFN 281
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
+ T+V+PC +D ++P+V++ F + + S D +D++G+C + + +T ++N +
Sbjct: 282 NETSVMPCEDDR--HLPTVQFDFTGIDDLESKSKDSLVDIIGICKSYEDATKITVRSNNR 339
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL-------- 651
KR+I L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G L
Sbjct: 340 EVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTI 399
Query: 652 --------------------------------------------LMREIQDQQLGMGDKA 667
+ E++ + LG GDK
Sbjct: 400 IANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGGNTNWKTLYEVKSENLGQGDKP 459
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF F YR+IL V
Sbjct: 460 DYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVN 519
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLE 782
I D+ + WVT FQ AE+ILG A +GE + + + A F +IFR+R K+E
Sbjct: 520 IADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVE 579
Query: 783 HYN 785
YN
Sbjct: 580 TYN 582
Score = 286 bits (731), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 142/328 (43%), Positives = 209/328 (63%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F + + S D +D++G+
Sbjct: 265 ANKQFTAVKNDYEMTFNNETSVMPCEDDR--HLPTVQFDFTGIDDLESKSKDSLVDIIGI 322
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T ++N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 323 CKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGAR 382
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + NPDIPE +KL+GWF + + VS ++GG+GGG
Sbjct: 383 VSDF-GGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQA-LDGVSISDLKSGGVGGGNT 440
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 441 -NWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 499
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG A +GE + +
Sbjct: 500 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFE 559
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F +IFR+R K+E YN +I
Sbjct: 560 EVFQNANFRSFIFRVRVKVETYNDESRI 587
>gi|334324842|ref|XP_001371635.2| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Monodelphis domestica]
Length = 868
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 213/543 (39%), Positives = 304/543 (55%), Gaps = 93/543 (17%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
DG+N S MLATQLN ++ + LS I Q+ R+IV+ + G R V+I+++L +++
Sbjct: 173 DGLNTVSSFMLATQLNVLVEEERLSSNCICQVNRFIVNTLKFG----RKVVILMDLEVLQ 228
Query: 387 PGTEIGFKIGNPQPLNTNTDNSSTQQTPA-ATNT--------NGSNGVHN---------- 427
E+G KIGNP P N P+ ATN NGS+G+ +
Sbjct: 229 SADEVGGKIGNPVPYNEGQGQQQAAPAPSPATNPVATKPQQQNGSSGLGSTATKSFGGSK 288
Query: 428 --------NVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
N++ P + VV PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKL
Sbjct: 289 TFGKVGNANLSTPGGSQLKVV---PIASLNPYQSKWTICARVTNKSQIRTWSNSRGEGKL 345
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FSI+++DESGEIRAT FND+ ++F +I+ +KVYY S TLK ANK+F+++ NDYEM+F
Sbjct: 346 FSIEMVDESGEIRATAFNDQVDKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFN 405
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
+ T+V+ C ++ ++P+V++ F + + + D +D++GVC + S V K++ +
Sbjct: 406 NETSVVLC--EDAHHLPTVQFDFTVIGDLENKAKDSLVDIIGVCKSYEDASKVVVKSSNR 463
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL-------- 651
KR++ L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G L
Sbjct: 464 EVSKRNVHLMDTSGKVVTTTLWGEDADRFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTI 523
Query: 652 --------------------------------------------LMREIQDQQLGMGDKA 667
+ E + + LG GDKA
Sbjct: 524 LVNPDIPEAFKLRGWFDSEGQALEVVSISDARGGGMGGSNTNWKTLYEAKSENLGQGDKA 583
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
DY S G + R N Y+ACPSQDCNKKVIDQ NG+YRCEKC++EF +F YR+IL V
Sbjct: 584 DYFSCVGTVVYLRKENCMYQACPSQDCNKKVIDQQNGLYRCEKCDREFPSFKYRMILSVN 643
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLE 782
I D+ + WVT FQ AE+ILG +GE + + + A F Y F++R KLE
Sbjct: 644 IADFQENQWVTCFQESAEAILGQNTAYLGELKDKNEQAFEEVFQNANFRSYTFKIRVKLE 703
Query: 783 HYN 785
YN
Sbjct: 704 TYN 706
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 144/328 (43%), Positives = 207/328 (63%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+ C ++ ++P+V++ F + + + D +D++GV
Sbjct: 389 ANKQFTAVKNDYEMTFNNETSVVLC--EDAHHLPTVQFDFTVIGDLENKAKDSLVDIIGV 446
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + S V K++ + KR++ L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 447 CKSYEDASKVVVKSSNREVSKRNVHLMDTSGKVVTTTLWGEDADRFDGSRQPVLAIKGAR 506
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + +NPDIPE KL+GWF ++ E VS R GGMGG
Sbjct: 507 VSDF-GGRSLSVLSSSTILVNPDIPEAFKLRGWFDSEGQA-LEVVSISDARGGGMGGSNT 564
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E + + LG GDKADY S G + R N Y+ACPSQDCNKKVIDQ NG+YR
Sbjct: 565 -NWKTLYEAKSENLGQGDKADYFSCVGTVVYLRKENCMYQACPSQDCNKKVIDQQNGLYR 623
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC++EF +F YR+IL V I D+ + WVT FQ AE+ILG +GE + +
Sbjct: 624 CEKCDREFPSFKYRMILSVNIADFQENQWVTCFQESAEAILGQNTAYLGELKDKNEQAFE 683
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F Y F++R KLE YN +I
Sbjct: 684 EVFQNANFRSYTFKIRVKLETYNDESRI 711
>gi|395536318|ref|XP_003770167.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit
[Sarcophilus harrisii]
Length = 607
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 213/547 (38%), Positives = 303/547 (55%), Gaps = 95/547 (17%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ + LS I Q+ RYIV+ + G R V+I+++L +
Sbjct: 33 MSDGLNTVSSFMLATQLNVLVEEERLSSNCICQVNRYIVNTLKFG----RKVVILMDLEV 88
Query: 385 IKPGTEIGFKIGNPQPLN--------TNTDNSSTQQTPAAT---NTNGSNGVHN------ 427
++ E+G KIGNP P N P AT NGS+G+ +
Sbjct: 89 LQSADEVGGKIGNPVPYNEGQGQQQAAPAPAPGPAANPVATKPQQQNGSSGLGSTATKSY 148
Query: 428 ------------NVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARG 475
N++ P + VV PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG
Sbjct: 149 GVSKTFGKVGSTNLSTPGGSQLKVV---PIASLNPYQSKWTICARVTNKSQIRTWSNSRG 205
Query: 476 SGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYE 535
GKLFSI+++DESGEIRAT FND+ ++F +I+ +KVYY S TLK ANK+F+++ NDYE
Sbjct: 206 EGKLFSIEMVDESGEIRATAFNDQVDKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYE 265
Query: 536 MSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGK 595
M+F + T+V+ C ++ ++P+V++ F + + + D +D++GVC + S V K
Sbjct: 266 MTFNNETSVVLC--EDAHHLPTVQFDFTVIGDLENKAKDSLVDIIGVCKSYEDASKVVVK 323
Query: 596 TNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL---- 651
++ + KR+I L+D S VT TLWG+EA+ FD S +PV+A+K ARVS+F G L
Sbjct: 324 SSNREVSKRNIHLMDTSGKVVTTTLWGEEADRFDGSRQPVLAIKGARVSDFGGRSLSVLS 383
Query: 652 ------------------------------------------------LMREIQDQQLGM 663
+ +++ + LG
Sbjct: 384 SSTMLVNPDIPEAFKLRGWFDSEGQALEAVSISDARGGGTGGSNANWKTLYDVKSENLGQ 443
Query: 664 GDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLI 723
GDKADY S + R N Y+ACPSQDCNKKVIDQ NG+YRCEKC++EF +F YR+I
Sbjct: 444 GDKADYFSCVATVVYLRKENCMYQACPSQDCNKKVIDQQNGLYRCEKCDREFPSFKYRMI 503
Query: 724 LPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLR 778
L V I D+ + WVT FQ AE+ILG +GE + + + A F Y F++R
Sbjct: 504 LSVNIADFQENQWVTCFQESAEAILGQNTAYLGELKDKNEQAFEEVFQNANFRSYTFKIR 563
Query: 779 AKLEHYN 785
KLE YN
Sbjct: 564 VKLETYN 570
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 141/330 (42%), Positives = 206/330 (62%), Gaps = 9/330 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+ C ++ ++P+V++ F + + + D +D++GV
Sbjct: 253 ANKQFTAVKNDYEMTFNNETSVVLC--EDAHHLPTVQFDFTVIGDLENKAKDSLVDIIGV 310
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + S V K++ + KR+I L+D S VT TLWG+EA+ FD S +PV+A+K AR
Sbjct: 311 CKSYEDASKVVVKSSNREVSKRNIHLMDTSGKVVTTTLWGEEADRFDGSRQPVLAIKGAR 370
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGMGGGAAGN 184
VS+F GG++LS+ SS + +NPDIPE KL+GWF ++ +S GG GG+ N
Sbjct: 371 VSDF-GGRSLSVLSSSTMLVNPDIPEAFKLRGWFDSEGQALEAVSISDARGGGTGGSNAN 429
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ +++ + LG GDKADY S + R N Y+ACPSQDCNKKVIDQ NG+YRCE
Sbjct: 430 WKTLYDVKSENLGQGDKADYFSCVATVVYLRKENCMYQACPSQDCNKKVIDQQNGLYRCE 489
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PA 299
KC++EF +F YR+IL V I D+ + WVT FQ AE+ILG +GE + +
Sbjct: 490 KCDREFPSFKYRMILSVNIADFQENQWVTCFQESAEAILGQNTAYLGELKDKNEQAFEEV 549
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKIPDGV 329
+ A F Y F++R KLE YN +I V
Sbjct: 550 FQNANFRSYTFKIRVKLETYNDESRIKASV 579
>gi|74143871|dbj|BAE41250.1| unnamed protein product [Mus musculus]
gi|74195701|dbj|BAE39655.1| unnamed protein product [Mus musculus]
Length = 621
Score = 377 bits (969), Expect = e-101, Method: Compositional matrix adjust.
Identities = 208/550 (37%), Positives = 300/550 (54%), Gaps = 95/550 (17%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ G L+ + Q+ ++IV+ + G R V+++++L +
Sbjct: 46 MSDGLNTLSSFMLATQLNTLVEGGQLASNCVCQVHKFIVNTLKDG----RKVVVLMDLEV 101
Query: 385 IKPGTEIGFKIGNPQPLNTN-------------TDNSSTQQTPAATN---TNGSNGVHNN 428
+K ++G KIGNP P N + ++ TP A+ NGS G+ +
Sbjct: 102 MKSAEDVGLKIGNPVPYNEGYGQQQQQQQQQQAVPSPASAATPPASKPQPQNGSLGMGST 161
Query: 429 VAIPRQASAPV----------------VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNN 472
A AS P + PI SL+PYQ+KWTI ARVTNK+ IR W+N
Sbjct: 162 AAKAYGASKPFGKPAGTGLLQPSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSN 221
Query: 473 ARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINN 532
+RG GKLFS++L+DESGEIRAT FN++ ++F +IE +KVYY S LK ANK+FS++ N
Sbjct: 222 SRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGALKIANKQFSAVKN 281
Query: 533 DYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSV 592
DYEM+F + T+V+PC + ++P+V++ F + + + D +D++G+C + +
Sbjct: 282 DYEMTFNNETSVLPCEDGH--HLPTVQFDFTGIGDLESKAKDALVDIIGICKSYEDSIKI 339
Query: 593 TGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG---- 648
T K+N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G
Sbjct: 340 TVKSNNREVAKRNIYLMDMSGKVVTTTLWGEDADKFDGSRQPVMAIKGARVSDFGGRSLS 399
Query: 649 ------------------------------------------------NLLLMREIQDQQ 660
N + E + +
Sbjct: 400 VLSSSTVIVNPDIPEAYKLRGWFDSEGQALDGVSISDHRSGGAGGGNTNWKTLHEAKSEN 459
Query: 661 LGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTY 720
LG GDKADY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC++EF F Y
Sbjct: 460 LGQGDKADYFSTVAAVVFLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDREFPNFKY 519
Query: 721 RLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIF 775
R+IL I D+ + WVT FQ AE+ILG +GE E + + A F + F
Sbjct: 520 RMILSANIADFQENQWVTCFQESAEAILGQNTMYLGELKEKNEQAFEEVFQNANFRSFTF 579
Query: 776 RLRAKLEHYN 785
R+R KLE YN
Sbjct: 580 RIRVKLETYN 589
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 143/328 (43%), Positives = 206/328 (62%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+FS++ NDYEM+F + T+V+PC + ++P+V++ F + + + D +D++G+
Sbjct: 272 ANKQFSAVKNDYEMTFNNETSVLPCEDGH--HLPTVQFDFTGIGDLESKAKDALVDIIGI 329
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + +T K+N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 330 CKSYEDSIKITVKSNNREVAKRNIYLMDMSGKVVTTTLWGEDADKFDGSRQPVMAIKGAR 389
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + +NPDIPE +KL+GWF ++ + VS R+GG GGG
Sbjct: 390 VSDF-GGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQA-LDGVSISDHRSGGAGGGNT 447
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E + + LG GDKADY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 448 -NWKTLHEAKSENLGQGDKADYFSTVAAVVFLRKENCMYQACPTQDCNKKVIDQQNGLYR 506
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC++EF F YR+IL I D+ + WVT FQ AE+ILG +GE E +
Sbjct: 507 CEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAILGQNTMYLGELKEKNEQAFE 566
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F + FR+R KLE YN +I
Sbjct: 567 EVFQNANFRSFTFRIRVKLETYNDESRI 594
>gi|281342356|gb|EFB17940.1| hypothetical protein PANDA_006470 [Ailuropoda melanoleuca]
Length = 563
Score = 377 bits (968), Expect = e-101, Method: Compositional matrix adjust.
Identities = 208/535 (38%), Positives = 296/535 (55%), Gaps = 94/535 (17%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLATQLN ++ + LS I QI R+IV+ + G R V+I++EL+I+K +G KI
Sbjct: 4 MLATQLNPLVEEEQLSSNCICQINRFIVNTLKDG----RRVVILMELDILKSAEAVGLKI 59
Query: 396 GNPQPLN----------------------------TNTDNSSTQQTPAATNTNGSNGVHN 427
GNP P N ++ S+T +T A+ T G G
Sbjct: 60 GNPVPYNEGHGQQQVVPSPVSAASAPANKPQQQNGSSAMGSTTSKTYGASKTFGKAG--- 116
Query: 428 NVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDE 487
++ A V+ PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKLFSI+L+DE
Sbjct: 117 GTSLANSAGGTQVKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDE 176
Query: 488 SGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPC 547
SGEIRAT FN++ ++F +I+ +KVYYIS LK ANK+F+++ NDYEM+F + T+V+PC
Sbjct: 177 SGEIRATAFNEQVDKFFPLIDMNKVYYISKGILKIANKQFTAVKNDYEMTFNNETSVMPC 236
Query: 548 NEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDIT 607
+ ++P+V++ F + + D ID++G+C + + +T K+N + KR+I
Sbjct: 237 EDGH--HLPTVQFDFTGIGDLENKPKDSLIDIIGICKSYEDATKITVKSNNREVSKRNIY 294
Query: 608 LVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG------------------- 648
L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G
Sbjct: 295 LMDMSGKVVTATLWGEDADRFDGSRQPVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPE 354
Query: 649 ---------------------------------NLLLMREIQDQQLGMGDKADYCSVRGI 675
N + E++ + LG GDKADY S
Sbjct: 355 AYKLRGWFDSEGQALDGVSISDLKSGGTGGSNTNWKTLYEVKSENLGHGDKADYFSSVAT 414
Query: 676 IQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSV 735
+ R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF F YR+IL V I D+ +
Sbjct: 415 VVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQENQ 474
Query: 736 WVTLFQNEAESILGVTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKLEHYN 785
WVT FQ AE+I+G + +GE + + + A F + FR+R KLE YN
Sbjct: 475 WVTCFQESAEAIIGQSTSYLGELKDKNEQAFEEIFQNANFRSFTFRIRVKLETYN 529
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 138/326 (42%), Positives = 204/326 (62%), Gaps = 9/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC + ++P+V++ F + + D ID++G+
Sbjct: 212 ANKQFTAVKNDYEMTFNNETSVMPCEDGH--HLPTVQFDFTGIGDLENKPKDSLIDIIGI 269
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T K+N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 270 CKSYEDATKITVKSNNREVSKRNIYLMDMSGKVVTATLWGEDADRFDGSRQPVMAIKGAR 329
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGMGGGAAGN 184
VS+F GG++LS+ SS + +NPDIPE +KL+GWF ++ +S G GG+ N
Sbjct: 330 VSDF-GGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQALDGVSISDLKSGGTGGSNTN 388
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ E++ + LG GDKADY S + R N Y+ACP+QDCNKKVIDQ NG+YRCE
Sbjct: 389 WKTLYEVKSENLGHGDKADYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCE 448
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA----- 299
KC+ EF F YR+IL V I D+ + WVT FQ AE+I+G + +GE + +
Sbjct: 449 KCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAIIGQSTSYLGELKDKNEQAFEEI 508
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F + FR+R KLE YN +I
Sbjct: 509 FQNANFRSFTFRIRVKLETYNDESRI 534
>gi|18390321|ref|NP_080929.1| replication protein A 70 kDa DNA-binding subunit isoform 2 [Mus
musculus]
gi|81879403|sp|Q8VEE4.1|RFA1_MOUSE RecName: Full=Replication protein A 70 kDa DNA-binding subunit;
Short=RP-A p70; AltName: Full=Replication factor A
protein 1; Short=RF-A protein 1
gi|17512293|gb|AAH19119.1| Replication protein A1 [Mus musculus]
gi|74139176|dbj|BAE38476.1| unnamed protein product [Mus musculus]
gi|74139822|dbj|BAE31755.1| unnamed protein product [Mus musculus]
gi|74178123|dbj|BAE29849.1| unnamed protein product [Mus musculus]
gi|74195120|dbj|BAE28302.1| unnamed protein product [Mus musculus]
gi|74195944|dbj|BAE30530.1| unnamed protein product [Mus musculus]
gi|74222487|dbj|BAE38134.1| unnamed protein product [Mus musculus]
gi|148680853|gb|EDL12800.1| replication protein A1 [Mus musculus]
Length = 623
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 208/552 (37%), Positives = 300/552 (54%), Gaps = 97/552 (17%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ G L+ + Q+ ++IV+ + G R V+++++L +
Sbjct: 46 MSDGLNTLSSFMLATQLNTLVEGGQLASNCVCQVHKFIVNTLKDG----RKVVVLMDLEV 101
Query: 385 IKPGTEIGFKIGNPQPLNTN---------------TDNSSTQQTPAATN---TNGSNGVH 426
+K ++G KIGNP P N + ++ TP A+ NGS G+
Sbjct: 102 MKSAEDVGLKIGNPVPYNEGYGQQQQQQQQQQQQAVPSPASAATPPASKPQPQNGSLGMG 161
Query: 427 NNVAIPRQASAPV----------------VQTHPIVSLSPYQNKWTIKARVTNKTPIREW 470
+ A AS P + PI SL+PYQ+KWTI ARVTNK+ IR W
Sbjct: 162 STAAKAYGASKPFGKPAGTGLLQPSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTW 221
Query: 471 NNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSI 530
+N+RG GKLFS++L+DESGEIRAT FN++ ++F +IE +KVYY S LK ANK+FS++
Sbjct: 222 SNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGALKIANKQFSAV 281
Query: 531 NNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELS 590
NDYEM+F + T+V+PC + ++P+V++ F + + + D +D++G+C +
Sbjct: 282 KNDYEMTFNNETSVLPCEDGH--HLPTVQFDFTGIGDLESKAKDALVDIIGICKSYEDSI 339
Query: 591 SVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG-- 648
+T K+N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G
Sbjct: 340 KITVKSNNREVAKRNIYLMDMSGKVVTTTLWGEDADKFDGSRQPVMAIKGARVSDFGGRS 399
Query: 649 --------------------------------------------------NLLLMREIQD 658
N + E +
Sbjct: 400 LSVLSSSTVIVNPDIPEAYKLRGWFDSEGQALDGVSISDHRSGGAGGGNTNWKTLHEAKS 459
Query: 659 QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTF 718
+ LG GDKADY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC++EF F
Sbjct: 460 ENLGQGDKADYFSTVAAVVFLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDREFPNF 519
Query: 719 TYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQY 773
YR+IL I D+ + WVT FQ AE+ILG +GE E + + A F +
Sbjct: 520 KYRMILSANIADFQENQWVTCFQESAEAILGQNTMYLGELKEKNEQAFEEVFQNANFRSF 579
Query: 774 IFRLRAKLEHYN 785
FR+R KLE YN
Sbjct: 580 TFRIRVKLETYN 591
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 143/328 (43%), Positives = 206/328 (62%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+FS++ NDYEM+F + T+V+PC + ++P+V++ F + + + D +D++G+
Sbjct: 274 ANKQFSAVKNDYEMTFNNETSVLPCEDGH--HLPTVQFDFTGIGDLESKAKDALVDIIGI 331
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + +T K+N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 332 CKSYEDSIKITVKSNNREVAKRNIYLMDMSGKVVTTTLWGEDADKFDGSRQPVMAIKGAR 391
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + +NPDIPE +KL+GWF ++ + VS R+GG GGG
Sbjct: 392 VSDF-GGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQA-LDGVSISDHRSGGAGGGNT 449
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E + + LG GDKADY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 450 -NWKTLHEAKSENLGQGDKADYFSTVAAVVFLRKENCMYQACPTQDCNKKVIDQQNGLYR 508
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC++EF F YR+IL I D+ + WVT FQ AE+ILG +GE E +
Sbjct: 509 CEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAILGQNTMYLGELKEKNEQAFE 568
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F + FR+R KLE YN +I
Sbjct: 569 EVFQNANFRSFTFRIRVKLETYNDESRI 596
>gi|322799305|gb|EFZ20693.1| hypothetical protein SINV_03263 [Solenopsis invicta]
Length = 588
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 205/520 (39%), Positives = 301/520 (57%), Gaps = 68/520 (13%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG +NSF MLATQLN++I D L+EF+I +I Y +S V++ S + V++IL++ +
Sbjct: 37 VSDGEKLNSFTMLATQLNNLIEDDILNEFSICKITNYHLSSVNN-SGKEKRVMLILDIEV 95
Query: 385 IKPGTEIGFKIGNPQ--PLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQT 442
+ G ++G +IGNP L + D ST T + NGS N+ QAS+ + T
Sbjct: 96 VVSGEKVGGRIGNPTNIELKSEPDTPSTSTTTTVRHQNGSTRTGNS----NQASSDI-HT 150
Query: 443 HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNR 502
PI +LSPYQN+W IKARV NK+PI+ W+N+RG GKLFS+DL+DESGEIR T F D ++
Sbjct: 151 TPIAALSPYQNRWVIKARVINKSPIKTWSNSRGEGKLFSMDLIDESGEIRCTAFRDVVDK 210
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F+D+I +YYIS C LK ANK+F+++ NDYEM+ T ++PC+ D ++P++++ F
Sbjct: 211 FYDLIVTGNIYYISRCVLKAANKQFNTMKNDYEMTMNSDTEIVPCH-DSSNDIPTLQFNF 269
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
P+ + ++ +DVLGV ++ +T +T + +KRDI++VD S VT+TLWG
Sbjct: 270 SPISQVESKEKNDLLDVLGVVTTVGDVQHITARTTGRELIKRDISIVDDSGTMVTVTLWG 329
Query: 623 KEAETFDASNKPVIAVKAARVSEFQGN--------------------------------- 649
+AE F ASN +IA+K ARV EF G
Sbjct: 330 TQAEEFGASNNTIIAIKGARVGEFNGGKNLSLVMSSIIEKDPDIPEAHRLRGWYTAVGHS 389
Query: 650 ------------------LLLMREIQDQQLG--MGDKADYCSVRGIIQVFRGSNTTYKAC 689
L +E D +LG M + +V I Q+ R N+ Y+AC
Sbjct: 390 ETAKSLSRVGGSTDFNGPLYTFQEATDARLGEKMNLPDSFTAVATIKQI-RTENSLYRAC 448
Query: 690 PSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILG 749
P + C KK+IDQ+NG++RCEKCNKE+ FTYRL+ + + D T S W+T F EAE ILG
Sbjct: 449 PVESCKKKLIDQDNGIFRCEKCNKEYPNFTYRLLASMELADATGSRWITAFNEEAEKILG 508
Query: 750 VTAQEVGESTEDHP-----ALKKALFTQYIFRLRAKLEHY 784
++AQE+GE E+ +A F ++F L+A+ E +
Sbjct: 509 MSAQELGELKENDKDAYLQKFGEATFKTFMFNLKARSEVF 548
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 201/327 (61%), Gaps = 10/327 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+ T ++PC+ D ++P++++ F P+ + ++ +DVLGV
Sbjct: 231 ANKQFNTMKNDYEMTMNSDTEIVPCH-DSSNDIPTLQFNFSPISQVESKEKNDLLDVLGV 289
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
++ +T +T + +KRDI++VD S VT+TLWG +AE F ASN +IA+K AR
Sbjct: 290 VTTVGDVQHITARTTGRELIKRDISIVDDSGTMVTVTLWGTQAEEFGASNNTIIAIKGAR 349
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
V EF GGK LSL MSS++ +PDIPE H+L+GW++ ++ R GG G L
Sbjct: 350 VGEFNGGKNLSLVMSSIIEKDPDIPEAHRLRGWYTAVGHSETAKSLSRVGG-STDFNGPL 408
Query: 186 LLMREIQDQQLG--MGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+E D +LG M + +V I Q+ R N+ Y+ACP + C KK+IDQ+NG++RC
Sbjct: 409 YTFQEATDARLGEKMNLPDSFTAVATIKQI-RTENSLYRACPVESCKKKLIDQDNGIFRC 467
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP----- 298
EKCNKE+ FTYRL+ + + D T S W+T F EAE ILG++AQE+GE E+
Sbjct: 468 EKCNKEYPNFTYRLLASMELADATGSRWITAFNEEAEKILGMSAQELGELKENDKDAYLQ 527
Query: 299 ALKKALFTQYIFRLRAKLEHYNGTKKI 325
+A F ++F L+A+ E + +I
Sbjct: 528 KFGEATFKTFMFNLKARSEVFQDEMRI 554
>gi|57525314|ref|NP_001006221.1| replication protein A 70 kDa DNA-binding subunit [Gallus gallus]
gi|75571284|sp|Q5ZJJ2.1|RFA1_CHICK RecName: Full=Replication protein A 70 kDa DNA-binding subunit;
Short=RP-A p70; AltName: Full=Replication factor A
protein 1; Short=RF-A protein 1
gi|53133544|emb|CAG32101.1| hypothetical protein RCJMB04_17l6 [Gallus gallus]
Length = 614
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 213/541 (39%), Positives = 299/541 (55%), Gaps = 86/541 (15%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGVN S MLATQLN ++ + LS I Q+ R+IV+ + G R V+I+++L++
Sbjct: 45 MSDGVNTLSSFMLATQLNPLVEEERLSAHCICQVNRFIVNSLKDG----RRVVILMDLDV 100
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAI-----PR------ 433
+K +G +GNP P N + A N N+++ P+
Sbjct: 101 LKTADMVGGTVGNPVPYNEGQGQQRSSAPTANAAPNKPQQQDGNLSVAGSAAPKYHAPSN 160
Query: 434 ---QASAPV-VQTH--------PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFS 481
+ASAP V+T PI SL+PYQ+KWTI ARVT K IR W+N+RG GKLFS
Sbjct: 161 QFSKASAPSSVKTPGGTQSKVVPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFS 220
Query: 482 IDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHS 541
I+L+DESGEIRAT FND+ ++F +IE +KVYY + LK ANK+++++ NDYE++F +
Sbjct: 221 IELVDESGEIRATAFNDQADKFFPLIELNKVYYFTKGNLKTANKQYTAVKNDYEITFNNE 280
Query: 542 TTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTY 601
T+V+PC D+ ++PSV++ FV + + D +DV+G+C +++ + K + +
Sbjct: 281 TSVVPC--DDAQHLPSVQFDFVSISDLENTPKDSIVDVIGICKSYEDVTKIVVKASNREV 338
Query: 602 MKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG------------- 648
KR++ L+D S VT TLWG EAE FD S +PVIA+K ARVS+F G
Sbjct: 339 SKRNVHLMDTSGKLVTATLWGNEAEKFDGSRQPVIAIKGARVSDFGGRSLSVLSSSTVVV 398
Query: 649 ---------------------------------------NLLLMREIQDQQLGMGDKADY 669
N + E + ++LG GDKADY
Sbjct: 399 NPDSPEAFKLRGWFDSEGQLLECASISDVRGGSASGVNTNWKTLYEAKSERLGQGDKADY 458
Query: 670 CSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIG 729
S G I R N Y+ACPSQDCNKKVIDQ NG+YRCEKC++EF F YR++L V I
Sbjct: 459 FSCVGTIVHLRKENCMYQACPSQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMMLLVTIA 518
Query: 730 DWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHY 784
D + WVT FQ AE ILG +A +GE + + + A F Y F++R KLE Y
Sbjct: 519 DSLDYQWVTCFQESAEFILGQSATFLGELKDKNEQAFEEVFQNANFNTYEFKIRVKLETY 578
Query: 785 N 785
N
Sbjct: 579 N 579
Score = 272 bits (695), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 142/326 (43%), Positives = 202/326 (61%), Gaps = 9/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+++++ NDYE++F + T+V+PC D+ ++PSV++ FV + + D +DV+G+
Sbjct: 262 ANKQYTAVKNDYEITFNNETSVVPC--DDAQHLPSVQFDFVSISDLENTPKDSIVDVIGI 319
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C +++ + K + + KR++ L+D S VT TLWG EAE FD S +PVIA+K AR
Sbjct: 320 CKSYEDVTKIVVKASNREVSKRNVHLMDTSGKLVTATLWGNEAEKFDGSRQPVIAIKGAR 379
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGMGGGAAGN 184
VS+F GG++LS+ SS + +NPD PE KL+GWF ++ +S GG G N
Sbjct: 380 VSDF-GGRSLSVLSSSTVVVNPDSPEAFKLRGWFDSEGQLLECASISDVRGGSASGVNTN 438
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ E + ++LG GDKADY S G I R N Y+ACPSQDCNKKVIDQ NG+YRCE
Sbjct: 439 WKTLYEAKSERLGQGDKADYFSCVGTIVHLRKENCMYQACPSQDCNKKVIDQQNGLYRCE 498
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PA 299
KC++EF F YR++L V I D + WVT FQ AE ILG +A +GE + +
Sbjct: 499 KCDREFPNFKYRMMLLVTIADSLDYQWVTCFQESAEFILGQSATFLGELKDKNEQAFEEV 558
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F Y F++R KLE YN +I
Sbjct: 559 FQNANFNTYEFKIRVKLETYNDESRI 584
>gi|432889884|ref|XP_004075379.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Oryzias latipes]
Length = 598
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 210/533 (39%), Positives = 306/533 (57%), Gaps = 83/533 (15%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG + S ML+TQLN + + L++ + +KR++ + + G R V+IILE+ +
Sbjct: 44 MSDGRHTLSSFMLSTQLNCMAEENILAQNCVCLLKRHVTNVLKDG----RRVVIILEIEV 99
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNT--------------NGSNGVHNNVA 430
IKP E+G K+G+P P N +Q PA N N G +A
Sbjct: 100 IKPAGEVGGKLGDPVPYN-EAQKGVSQPAPAQENRLPLQPQNKIEVKSFNRDFGKKAPLA 158
Query: 431 IPRQ--ASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDES 488
+P S+ VV PI SL+PYQ+KWTI+ARVTNK+ IR W+N+RG GKLFS++L+DES
Sbjct: 159 MPSTPGGSSKVV---PIASLNPYQSKWTIRARVTNKSGIRTWSNSRGDGKLFSMELVDES 215
Query: 489 GEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
GEIR T FN E ++F +IE KVYYIS +LK ANK+++S+ NDYEM+ +T++PC
Sbjct: 216 GEIRVTGFNQEVDKFFSLIEVGKVYYISKGSLKIANKQYTSVKNDYEMTLNGESTILPC- 274
Query: 549 EDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITL 608
+E G++P ++ FVP+ + D +DV+GVC E++ +T KTN++ KR ++L
Sbjct: 275 -EESGDVPMMQCDFVPIGDLESRDKDAIVDVIGVCKSVDEVTRLTTKTNREV-SKRSLSL 332
Query: 609 VDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL----------------- 651
+D S VT+TLWG+EAE FD S +P++A+K A++S+F G L
Sbjct: 333 MDMSGKLVTVTLWGEEAEKFDGSGQPIVAIKGAKLSDFGGRSLSASFSSTLMINPDIPEA 392
Query: 652 ----------------------------------LMREIQDQQLGMGDKADYCSVRGIIQ 677
+ +++++ LG G+KADY S +
Sbjct: 393 YKLRGWYDKDGHAVEGQSLTELKGGSGGGSTNWKTLSDLKNEHLGHGEKADYYSCIATVV 452
Query: 678 VFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWV 737
R N Y+ACP+QDCNKKVIDQ+NGM+RCEKC+KEF F YRLIL I D+ ++ WV
Sbjct: 453 YLRKENCLYQACPNQDCNKKVIDQHNGMFRCEKCDKEFPNFKYRLILSANIADYGDNQWV 512
Query: 738 TLFQNEAESILGVTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKLEHYN 785
T FQ AE+ILG A +G+ + + + ++A F ++FR R KLE YN
Sbjct: 513 TCFQESAEAILGQNAAYLGQLKDSNESAFDEVFQQANFKTFVFRNRVKLETYN 565
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 142/326 (43%), Positives = 215/326 (65%), Gaps = 11/326 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+++S+ NDYEM+ +T++PC +E G++P ++ FVP+ + D +DV+GV
Sbjct: 250 ANKQYTSVKNDYEMTLNGESTILPC--EESGDVPMMQCDFVPIGDLESRDKDAIVDVIGV 307
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C E++ +T KTN++ KR ++L+D S VT+TLWG+EAE FD S +P++A+K A+
Sbjct: 308 CKSVDEVTRLTTKTNREV-SKRSLSLMDMSGKLVTVTLWGEEAEKFDGSGQPIVAIKGAK 366
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGMGGGAAGN 184
+S+F GG++LS S SS L +NPDIPE +KL+GW+ + + +++ GG GGG+ N
Sbjct: 367 LSDF-GGRSLSASFSSTLMINPDIPEAYKLRGWYDKDGHAVEGQSLTELKGGSGGGST-N 424
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ +++++ LG G+KADY S + R N Y+ACP+QDCNKKVIDQ+NGM+RCE
Sbjct: 425 WKTLSDLKNEHLGHGEKADYYSCIATVVYLRKENCLYQACPNQDCNKKVIDQHNGMFRCE 484
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA----- 299
KC+KEF F YRLIL I D+ ++ WVT FQ AE+ILG A +G+ + + +
Sbjct: 485 KCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKDSNESAFDEV 544
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
++A F ++FR R KLE YN +I
Sbjct: 545 FQQANFKTFVFRNRVKLETYNDESRI 570
>gi|403275301|ref|XP_003929392.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit
[Saimiri boliviensis boliviensis]
Length = 560
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 207/534 (38%), Positives = 298/534 (55%), Gaps = 92/534 (17%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLATQLN ++ +G L+ + +I R+IV+ + G R V+I++EL+++K +G KI
Sbjct: 1 MLATQLNTLVEEGQLASNCVCRINRFIVNTLKDG----RRVVILMELDVLKSAEAVGIKI 56
Query: 396 GNPQPLNTNTDNSSTQQTPAATNT---------NGSNGVHNNVAIPR---------QASA 437
GNP P N P + NGS+GV + V P+ +A
Sbjct: 57 GNPVPYNEGHGQQQVAPPPVPAASPASSKPQPQNGSSGVGSTV--PKAYGASKTFGKAGG 114
Query: 438 PVVQTH---------PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDES 488
P + + PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKLFS++L+DES
Sbjct: 115 PSLSSTSGGTQAKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDES 174
Query: 489 GEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
GEIRAT FN++ ++F +IE +KVYY S TLK ANK+F+++ NDYEM+F + T+V+PC
Sbjct: 175 GEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCE 234
Query: 549 EDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITL 608
+D ++P+V++ F + + S D +D++G+C + +T ++N + KR+I L
Sbjct: 235 DDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDAIKITVRSNNREVAKRNIYL 292
Query: 609 VDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG-------------------- 648
+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G
Sbjct: 293 MDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIILNPDIPEA 352
Query: 649 --------------------------------NLLLMREIQDQQLGMGDKADYCSVRGII 676
N + E++ + LG GDK DY S +
Sbjct: 353 YKLRGWFDSEGQALDGVSISDLKSGGLGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATV 412
Query: 677 QVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW 736
R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF F YR+IL V I D+ + W
Sbjct: 413 VYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQW 472
Query: 737 VTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYN 785
VT FQ AE+ILG A +GE + + + A F +IFR+R K+E YN
Sbjct: 473 VTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETYN 526
Score = 285 bits (729), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 142/328 (43%), Positives = 209/328 (63%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F + + S D +D++G+
Sbjct: 209 ANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGI 266
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + +T ++N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 267 CKSYEDAIKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGAR 326
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + LNPDIPE +KL+GWF ++ + VS ++GG+GG
Sbjct: 327 VSDF-GGRSLSVLSSSTIILNPDIPEAYKLRGWFDSEGQA-LDGVSISDLKSGGLGGSNT 384
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 385 -NWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 443
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG A +GE + +
Sbjct: 444 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFE 503
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F +IFR+R K+E YN +I
Sbjct: 504 EVFQNANFRSFIFRVRVKVETYNDESRI 531
>gi|355568066|gb|EHH24347.1| Replication protein A 70 kDa DNA-binding subunit, partial [Macaca
mulatta]
Length = 605
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 210/543 (38%), Positives = 300/543 (55%), Gaps = 88/543 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ LS I QI R+IV+ + G R V+I++EL +
Sbjct: 35 MSDGLNTLSSFMLATQLNPLVEQERLSSNCICQIHRFIVNTLKDG----RRVVILMELEV 90
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAAT---------NTNGSNGVHNNVAIPRQA 435
+K +G KIGNP P N +A +GS+G + V+ A
Sbjct: 91 LKSAEVVGVKIGNPVPYNEGHGQPQAAPPASAGSPAASSKPQQQHGSSGAGSTVSKAYGA 150
Query: 436 S-------APVV---------QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
S P + + PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKL
Sbjct: 151 SKTFGKAGGPSLSNTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKL 210
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FS++L+DESGEIRAT FN++ ++F +IE +KVYY S TLK ANK+F+++ ND+EM+F
Sbjct: 211 FSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDFEMTFN 270
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
+ T+V+PC +D ++P+V++ F + + S D +D++G+C + + +T ++N +
Sbjct: 271 NETSVMPCEDDR--HLPTVQFDFTGIDDLESKSKDSLVDIIGICKSYEDATKITVRSNNR 328
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL-------- 651
KR+I L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G L
Sbjct: 329 EVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTI 388
Query: 652 --------------------------------------------LMREIQDQQLGMGDKA 667
+ E++ + LG GDK
Sbjct: 389 IANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGGNTNWKTLYEVKSENLGQGDKP 448
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF F YR+IL V
Sbjct: 449 DYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVN 508
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLE 782
I D+ + WVT FQ AE+ILG A +GE + + + A F +IFR+R K+E
Sbjct: 509 IADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVE 568
Query: 783 HYN 785
YN
Sbjct: 569 TYN 571
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 141/328 (42%), Positives = 209/328 (63%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ ND+EM+F + T+V+PC +D ++P+V++ F + + S D +D++G+
Sbjct: 254 ANKQFTAVKNDFEMTFNNETSVMPCEDDR--HLPTVQFDFTGIDDLESKSKDSLVDIIGI 311
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T ++N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 312 CKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGAR 371
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + NPDIPE +KL+GWF + + VS ++GG+GGG
Sbjct: 372 VSDF-GGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQA-LDGVSISDLKSGGVGGGNT 429
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 430 -NWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 488
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG A +GE + +
Sbjct: 489 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFE 548
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F +IFR+R K+E YN +I
Sbjct: 549 EVFQNANFRSFIFRVRVKVETYNDESRI 576
>gi|115496244|ref|NP_001068644.1| replication protein A 70 kDa DNA-binding subunit [Bos taurus]
gi|111308484|gb|AAI19987.1| Replication protein A1, 70kDa [Bos taurus]
gi|296476839|tpg|DAA18954.1| TPA: replication protein A1 [Bos taurus]
Length = 616
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 208/543 (38%), Positives = 296/543 (54%), Gaps = 88/543 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ + LS I QI R+IV+ + G R V+I++EL +
Sbjct: 46 MSDGLNTLSSFMLATQLNPLVEEERLSSNCICQINRFIVNTLKDG----RRVVILMELEV 101
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNT---------NGSNGVHNNVAIPRQA 435
+K +G KIGNP P N P + + NGS G+ + + A
Sbjct: 102 LKSAEAVGSKIGNPVPYNEGHGQQPVVPPPVSATSPPTSRPQQQNGSPGMASTASKAFGA 161
Query: 436 SAPV----------------VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
S + PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKL
Sbjct: 162 SKTFGKAGGTSQVNSSGGTQAKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKL 221
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FSI+L+DESGEIRAT FN++ ++F +I+ +KVYY S TLK ANK+F+++ NDYEM+F
Sbjct: 222 FSIELVDESGEIRATAFNEQADKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFN 281
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
+ T+V+PC + ++P+V++ F + + S D +D++G+C + +++ + K+N +
Sbjct: 282 NETSVMPCEDGH--HLPTVQFDFTGIGDLESKSKDSLVDIIGICKNYEDVTKIIVKSNNR 339
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL-------- 651
KR+I L+D S V TLWG +A+ FD S +PV+A+K ARVS+F G L
Sbjct: 340 EVSKRNIYLMDMSGKVVNATLWGDDADKFDGSRQPVMAIKGARVSDFGGRSLSVLSSSTI 399
Query: 652 --------------------------------------------LMREIQDQQLGMGDKA 667
+ E++ + LG GDK
Sbjct: 400 IVNPDIPEAYKLRGWFDSEGQALDGISISDLKSGGAGGSNTNWKTLYEVKSENLGQGDKP 459
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF F YR+IL V
Sbjct: 460 DYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVN 519
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLE 782
I D+ + WVT FQ AE+ILG + +GE E + + A F + FR+R KLE
Sbjct: 520 IADFQENQWVTCFQESAEAILGQSTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLE 579
Query: 783 HYN 785
YN
Sbjct: 580 TYN 582
Score = 279 bits (713), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 137/326 (42%), Positives = 203/326 (62%), Gaps = 9/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC + ++P+V++ F + + S D +D++G+
Sbjct: 265 ANKQFTAVKNDYEMTFNNETSVMPCEDGH--HLPTVQFDFTGIGDLESKSKDSLVDIIGI 322
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + +++ + K+N + KR+I L+D S V TLWG +A+ FD S +PV+A+K AR
Sbjct: 323 CKNYEDVTKIIVKSNNREVSKRNIYLMDMSGKVVNATLWGDDADKFDGSRQPVMAIKGAR 382
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFE-PVSQRTGGMGGGAAGN 184
VS+F GG++LS+ SS + +NPDIPE +KL+GWF ++ +S G GG+ N
Sbjct: 383 VSDF-GGRSLSVLSSSTIIVNPDIPEAYKLRGWFDSEGQALDGISISDLKSGGAGGSNTN 441
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCE
Sbjct: 442 WKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCE 501
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PA 299
KC+ EF F YR+IL V I D+ + WVT FQ AE+ILG + +GE E +
Sbjct: 502 KCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQSTAYLGELKEKNEQAFEEV 561
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F + FR+R KLE YN +I
Sbjct: 562 FQNANFRSFTFRIRVKLETYNDESRI 587
>gi|240849249|ref|NP_001155361.1| replication protein A 70 kDa DNA-binding subunit [Ovis aries]
gi|238815019|gb|ACR56706.1| replication protein A1 [Ovis aries]
Length = 616
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 209/543 (38%), Positives = 298/543 (54%), Gaps = 88/543 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ + LS I QI R+IV+ + G R V+I++E+ +
Sbjct: 46 MSDGLNTLSSFMLATQLNPLVEEEQLSSNCICQINRFIVNTLKDG----RRVVILMEVEV 101
Query: 385 IKPGTEIGFKIGNPQPLNTN---------TDNSSTQQTPAATNTNGSNGVHNNVAIPRQA 435
+K +G KIGNP P N ++++ T NGS GV + + A
Sbjct: 102 LKSAEAVGSKIGNPVPYNEGHGQQPVVPPPVSAASPPTSRPQQQNGSPGVASTASKAFGA 161
Query: 436 SAPV----------------VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
S + PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKL
Sbjct: 162 SKTFGKAGGTSQVNSSGGTQAKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKL 221
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FSI+L+DESGEIRAT FN++ ++F +I+ +KVYY S TLK ANK+F+++ NDYEM+F
Sbjct: 222 FSIELVDESGEIRATAFNEQADKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFN 281
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
+ T+V+PC + ++P+V++ F + + S D +D++G+C + +++ +T K+N +
Sbjct: 282 NETSVMPCEDGR--HLPTVQFDFTGIGDLESKSKDSLVDIIGICKNYEDVTKITVKSNNR 339
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL-------- 651
KR+I L+D S V TLWG +A+ FD S +PV+A+K ARVS+F G L
Sbjct: 340 EVSKRNIYLMDMSGKVVNATLWGDDADKFDGSRQPVMAIKGARVSDFGGRSLSVLSSSTI 399
Query: 652 --------------------------------------------LMREIQDQQLGMGDKA 667
+ E++ + LG GDK
Sbjct: 400 IVNPDIPEAYKLRGWFDSEGQALDGISISDLKSGGAGGSNTNWKTLYEVKSENLGQGDKP 459
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF F YR+IL V
Sbjct: 460 DYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVN 519
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLE 782
I D+ + WVT FQ AE+ILG +GE E + + A F + FR+R KLE
Sbjct: 520 IADFQENQWVTCFQESAEAILGQNTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLE 579
Query: 783 HYN 785
YN
Sbjct: 580 TYN 582
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 138/326 (42%), Positives = 203/326 (62%), Gaps = 9/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC + ++P+V++ F + + S D +D++G+
Sbjct: 265 ANKQFTAVKNDYEMTFNNETSVMPCEDGR--HLPTVQFDFTGIGDLESKSKDSLVDIIGI 322
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + +++ +T K+N + KR+I L+D S V TLWG +A+ FD S +PV+A+K AR
Sbjct: 323 CKNYEDVTKITVKSNNREVSKRNIYLMDMSGKVVNATLWGDDADKFDGSRQPVMAIKGAR 382
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFE-PVSQRTGGMGGGAAGN 184
VS+F GG++LS+ SS + +NPDIPE +KL+GWF ++ +S G GG+ N
Sbjct: 383 VSDF-GGRSLSVLSSSTIIVNPDIPEAYKLRGWFDSEGQALDGISISDLKSGGAGGSNTN 441
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCE
Sbjct: 442 WKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCE 501
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PA 299
KC+ EF F YR+IL V I D+ + WVT FQ AE+ILG +GE E +
Sbjct: 502 KCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNTAYLGELKEKNEQAFEEV 561
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F + FR+R KLE YN +I
Sbjct: 562 FQNANFRSFTFRIRVKLETYNDESRI 587
>gi|440912313|gb|ELR61897.1| Replication protein A 70 kDa DNA-binding subunit [Bos grunniens
mutus]
Length = 616
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 210/546 (38%), Positives = 296/546 (54%), Gaps = 94/546 (17%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ + LS I QI R+IV+ + G R V+I++EL +
Sbjct: 46 MSDGLNTLSSFMLATQLNPLVEEERLSSNCICQINRFIVNTLKDG----RRVVILMELEV 101
Query: 385 IKPGTEIGFKIGNPQPLNTNTDN----------------------------SSTQQTPAA 416
+K +G KIGNP P N S+ + A
Sbjct: 102 LKSAEAVGSKIGNPVPYNEGHGQQPVVPPPVSAASPPTSRPQQQNGSPGMASTASKAFGA 161
Query: 417 TNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGS 476
+ T G G + V A VV PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG
Sbjct: 162 SKTFGKAGGTSQVNSSGGTQAKVV---PIASLTPYQSKWTICARVTNKSQIRTWSNSRGE 218
Query: 477 GKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEM 536
GKLFSI+L+DESGEIRAT FN++ ++F +I+ +KVYY S TLK ANK+F+++ NDYEM
Sbjct: 219 GKLFSIELVDESGEIRATAFNEQADKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEM 278
Query: 537 SFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKT 596
+F + T+V+PC + ++P+V++ F + + S D +D++G+C + +++ + K+
Sbjct: 279 TFNNETSVMPCEDGH--HLPTVQFDFTGIGDLESKSKDSLVDIIGICKNYEDVTKIIVKS 336
Query: 597 NQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG-------- 648
N + KR+I L+D S V TLWG +A+ FD S +PV+A+K ARVS+F G
Sbjct: 337 NNREVSKRNIYLMDMSGKVVNATLWGDDADKFDGSRQPVMAIKGARVSDFGGRSLSVLSS 396
Query: 649 --------------------------------------------NLLLMREIQDQQLGMG 664
N + E++ + LG G
Sbjct: 397 STIIVNPDIPEAYKLRGWFDSEGQALDGISISDLKSGGAGGSNTNWKTLYEVKSENLGQG 456
Query: 665 DKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLIL 724
DK DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF F YR+IL
Sbjct: 457 DKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMIL 516
Query: 725 PVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRA 779
V I D+ + WVT FQ AE+ILG + +GE E + + A F + FR+R
Sbjct: 517 SVNIADFQENQWVTCFQESAEAILGQSTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRV 576
Query: 780 KLEHYN 785
KLE YN
Sbjct: 577 KLETYN 582
Score = 279 bits (714), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 137/326 (42%), Positives = 203/326 (62%), Gaps = 9/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC + ++P+V++ F + + S D +D++G+
Sbjct: 265 ANKQFTAVKNDYEMTFNNETSVMPCEDGH--HLPTVQFDFTGIGDLESKSKDSLVDIIGI 322
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + +++ + K+N + KR+I L+D S V TLWG +A+ FD S +PV+A+K AR
Sbjct: 323 CKNYEDVTKIIVKSNNREVSKRNIYLMDMSGKVVNATLWGDDADKFDGSRQPVMAIKGAR 382
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFE-PVSQRTGGMGGGAAGN 184
VS+F GG++LS+ SS + +NPDIPE +KL+GWF ++ +S G GG+ N
Sbjct: 383 VSDF-GGRSLSVLSSSTIIVNPDIPEAYKLRGWFDSEGQALDGISISDLKSGGAGGSNTN 441
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCE
Sbjct: 442 WKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCE 501
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PA 299
KC+ EF F YR+IL V I D+ + WVT FQ AE+ILG + +GE E +
Sbjct: 502 KCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQSTAYLGELKEKNEQAFEEV 561
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F + FR+R KLE YN +I
Sbjct: 562 FQNANFRSFTFRIRVKLETYNDESRI 587
>gi|410910178|ref|XP_003968567.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Takifugu rubripes]
Length = 600
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 216/544 (39%), Positives = 307/544 (56%), Gaps = 80/544 (14%)
Query: 315 KLEHYNGTKK----IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGS 370
K+E NG + + DG + S ML+TQLN +I + TLS + I +KR++ + + G
Sbjct: 30 KIEGGNGLPRFRVMMSDGRHTLSSFMLSTQLNYLIEENTLSLYCICVLKRHVTNILKDG- 88
Query: 371 ATNRSVLIILELNIIKPGTEIGFKIGNPQPLNTN-------TDNSSTQQTPAATNTNGSN 423
R V+IILE+++IK E+ +IG+P P + T N ++ N N N
Sbjct: 89 ---RRVVIILEIDVIKRAEEVAGRIGDPTPYTESQTKPQQTTSNHDSRPPLQPQNRNEMN 145
Query: 424 -GVHNNVAIPRQASAPVV-----QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSG 477
G + A+ P + PI SL+PYQ+KWTI+ARVTNK+ IR W+N+RG G
Sbjct: 146 RGFSKDFGKKGPAAMPSTPGGGSKVVPIASLNPYQSKWTIRARVTNKSSIRTWSNSRGDG 205
Query: 478 KLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMS 537
KLF+++L+DESGEIR T FN E ++F +IE KVYYIS C+LK ANK+++S+ NDYEM+
Sbjct: 206 KLFTVELVDESGEIRMTAFNQEVDKFFGLIEAGKVYYISKCSLKIANKQYTSVKNDYEMT 265
Query: 538 FTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTN 597
++++PC ED ++P V+ FV + + D +DV+GVC E + T K+N
Sbjct: 266 LNGESSIVPC-EDSC-DVPMVQCDFVSIGDLENKEKDSIVDVIGVCKKTDEATHFTSKSN 323
Query: 598 QKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG--------- 648
++ KR + L+D S VT+TLWG+EAE FD S +P+IA+K A++S+F G
Sbjct: 324 REM-SKRTLHLIDMSGKLVTVTLWGEEAEKFDGSGEPIIAIKGAKLSDFGGCSLSASFSS 382
Query: 649 ----------------------------NLLLMR--------------EIQDQQLGMGDK 666
+L MR +++ + LG G+K
Sbjct: 383 TLMVNPDIPEAHKLRGWYDKEGHSMEGQSLTEMRSGGGGGNTNWKTLTDVKTEHLGHGEK 442
Query: 667 ADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPV 726
ADY + I R N Y+ACPSQDCNKKV+DQ NGM+RCEKC+KEF F YRLIL
Sbjct: 443 ADYYTCIATIVYLRKENCLYQACPSQDCNKKVVDQQNGMFRCEKCDKEFPNFKYRLILSA 502
Query: 727 MIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKL 781
I D+ ++ WVT FQ AE+ILG A +G+ E + A ++A F +IFR R KL
Sbjct: 503 NIADYGDNQWVTCFQESAEAILGQNAAYLGQLKESNEAAFDEVFQQANFNSFIFRSRVKL 562
Query: 782 EHYN 785
E YN
Sbjct: 563 ETYN 566
Score = 278 bits (711), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 144/326 (44%), Positives = 207/326 (63%), Gaps = 11/326 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+++S+ NDYEM+ ++++PC ED ++P V+ FV + + D +DV+GV
Sbjct: 251 ANKQYTSVKNDYEMTLNGESSIVPC-EDSC-DVPMVQCDFVSIGDLENKEKDSIVDVIGV 308
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C E + T K+N++ KR + L+D S VT+TLWG+EAE FD S +P+IA+K A+
Sbjct: 309 CKKTDEATHFTSKSNREM-SKRTLHLIDMSGKLVTVTLWGEEAEKFDGSGEPIIAIKGAK 367
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGMGGGAAGN 184
+S+F GG +LS S SS L +NPDIPE HKL+GW+ + ++ + +++ G GGG N
Sbjct: 368 LSDF-GGCSLSASFSSTLMVNPDIPEAHKLRGWYDKEGHSMEGQSLTEMRSG-GGGGNTN 425
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ +++ + LG G+KADY + I R N Y+ACPSQDCNKKV+DQ NGM+RCE
Sbjct: 426 WKTLTDVKTEHLGHGEKADYYTCIATIVYLRKENCLYQACPSQDCNKKVVDQQNGMFRCE 485
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA----- 299
KC+KEF F YRLIL I D+ ++ WVT FQ AE+ILG A +G+ E + A
Sbjct: 486 KCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKESNEAAFDEV 545
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
++A F +IFR R KLE YN +I
Sbjct: 546 FQQANFNSFIFRSRVKLETYNDESRI 571
>gi|312371186|gb|EFR19433.1| hypothetical protein AND_22425 [Anopheles darlingi]
Length = 621
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 223/543 (41%), Positives = 308/543 (56%), Gaps = 85/543 (15%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DG ++ S+AMLATQLND+ G L+E TI++I RY S V+ + VLII+EL +
Sbjct: 47 ISDGKSLYSYAMLATQLNDMHRQGKLAENTIIRIDRYTTSVVNRNEKGEKRVLIIVELTV 106
Query: 385 IKPGTEIGFKIGNPQPLN----TNTDNS-----STQQTPAATN---------TNGSN--- 423
+K G +G KIGNPQP+ + T NS S+ + PAA++ T GSN
Sbjct: 107 LKDGALVGEKIGNPQPMTDVPASQTQNSVGGSASSYEKPAASSRPSETSGLSTYGSNRSA 166
Query: 424 -GVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSI 482
G + VA AS THPI SLSPYQNKW IKARV +K+ IR W+NA+G GKLFS+
Sbjct: 167 GGSNGTVA---GASLSDTLTHPISSLSPYQNKWVIKARVMSKSGIRTWSNAKGEGKLFSM 223
Query: 483 DLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHST 542
D++DESGEIR T F ++C+R++DMIE DKVY+IS C LKPANK++S++ NDYEM+ T+ T
Sbjct: 224 DVMDESGEIRVTAFKEQCDRYYDMIEVDKVYFISKCQLKPANKQYSNLKNDYEMTMTNDT 283
Query: 543 TVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYM 602
V C +D+ G+MP ++Y FVP+ IA + P+ +DV+GVC +A+E+ T KT+ +
Sbjct: 284 IVQEC-KDKDGSMPEIQYNFVPIAQIANLEPNATVDVIGVCKEASEVVQFTAKTSGRELR 342
Query: 603 KRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLL-------MRE 655
KR+ TLVD S A+V +TLWG +A+ F AS+ PV+ V+ ARVSEF G L M+
Sbjct: 343 KREATLVDSSNAAVQLTLWGDDAQNFPASSNPVVLVRGARVSEFGGGKTLGLIGGSVMKL 402
Query: 656 IQDQQLGM---------GDKADYCSVRGIIQ------------VFR-GSNTTYKACPSQD 693
D + G A SV FR S+ + A D
Sbjct: 403 NPDMEAAHRVRGWFENGGRDASLASVSARTGAGAGAGLNTEWLTFREASDRSLGAGDKPD 462
Query: 694 CNK-----KVIDQNNGMYRC---EKCNK-----------------EFNTFTYRLILPVMI 728
+ I N +Y+ CNK EF F YRL++ ++I
Sbjct: 463 YFQVKAMIHTIKSQNAVYKACPQADCNKKVIDQDNGQYRCEKCNAEFPNFKYRLLVNMLI 522
Query: 729 GDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFT-----QYIFRLRAKLEH 783
GDWT++ WVT+F AE + G ++QE+G E + LFT +IF+LR K+E
Sbjct: 523 GDWTSNRWVTMFTELAEEVFGKSSQEIGSMLEFQTEEAEKLFTSMCFKSFIFKLRTKVEF 582
Query: 784 YNK 786
YN+
Sbjct: 583 YNE 585
Score = 311 bits (798), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 153/323 (47%), Positives = 208/323 (64%), Gaps = 8/323 (2%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK++S++ NDYEM+ T+ T V C +D+ G+MP ++Y FVP+ IA + P+ +DV+G
Sbjct: 263 PANKQYSNLKNDYEMTMTNDTIVQEC-KDKDGSMPEIQYNFVPIAQIANLEPNATVDVIG 321
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
VC +A+E+ T KT+ + KR+ TLVD S A+V +TLWG +A+ F AS+ PV+ V+ A
Sbjct: 322 VCKEASEVVQFTAKTSGRELRKREATLVDSSNAAVQLTLWGDDAQNFPASSNPVVLVRGA 381
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAG 183
RVSEF GGKTL L SV+ LNPD+ H+++GWF + VS RTG G
Sbjct: 382 RVSEFGGGKTLGLIGGSVMKLNPDMEAAHRVRGWFENGGRDASLASVSARTGAGAGAGLN 441
Query: 184 -NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
L RE D+ LG GDK DY V+ +I + N YKACP DCNKKVIDQ+NG YR
Sbjct: 442 TEWLTFREASDRSLGAGDKPDYFQVKAMIHTIKSQNAVYKACPQADCNKKVIDQDNGQYR 501
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKK 302
CEKCN EF F YRL++ ++IGDWT++ WVT+F AE + G ++QE+G E +
Sbjct: 502 CEKCNAEFPNFKYRLLVNMLIGDWTSNRWVTMFTELAEEVFGKSSQEIGSMLEFQTEEAE 561
Query: 303 ALFT-----QYIFRLRAKLEHYN 320
LFT +IF+LR K+E YN
Sbjct: 562 KLFTSMCFKSFIFKLRTKVEFYN 584
>gi|197098316|ref|NP_001126290.1| replication protein A 70 kDa DNA-binding subunit [Pongo abelii]
gi|75054872|sp|Q5R7Q4.1|RFA1_PONAB RecName: Full=Replication protein A 70 kDa DNA-binding subunit;
Short=RP-A p70; AltName: Full=Replication factor A
protein 1; Short=RF-A protein 1
gi|55730978|emb|CAH92206.1| hypothetical protein [Pongo abelii]
Length = 616
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 207/543 (38%), Positives = 299/543 (55%), Gaps = 88/543 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S M ATQLN ++ LS + QI R+IV+ + G R V+I++EL +
Sbjct: 46 MSDGLNTLSSFMSATQLNPLVEQEQLSSNCVCQINRFIVNTLKDG----RRVVILMELEV 101
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNT---------NGSNGVHNNVAIPR-- 433
+K +G KIGNP P N A + NG++G + V+
Sbjct: 102 LKSAEVVGVKIGNPVPYNEGLGQPQVAPPAPAASPAASSRPQPQNGTSGAGSTVSKAYGA 161
Query: 434 -----QASAPVVQTH---------PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
+A+ P + + PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG KL
Sbjct: 162 SKTFGKAAGPSLSHNSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEEKL 221
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FS++L+DESGEIRAT FN++ ++F +IE +KVYY S TLK ANK+F+++ NDYEM+F
Sbjct: 222 FSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFN 281
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
+ T+V+PC +D ++P+V++ F + + S D +D++G+C + + +T ++N +
Sbjct: 282 NETSVMPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNR 339
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL-------- 651
KR+I L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G L
Sbjct: 340 EVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTI 399
Query: 652 --------------------------------------------LMREIQDQQLGMGDKA 667
+ E++ + LG GDK
Sbjct: 400 IANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGGNTNWKTLYEVKSENLGQGDKP 459
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF F YR+IL V
Sbjct: 460 DYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVN 519
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLE 782
I D+ + WVT FQ AE+ILG A +GE + + + A F +IFR+R K+E
Sbjct: 520 IADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVE 579
Query: 783 HYN 785
YN
Sbjct: 580 TYN 582
Score = 286 bits (731), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 142/328 (43%), Positives = 209/328 (63%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F + + S D +D++G+
Sbjct: 265 ANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGI 322
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T ++N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 323 CKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGAR 382
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + NPDIPE +KL+GWF + + VS ++GG+GGG
Sbjct: 383 VSDF-GGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQA-LDGVSISDLKSGGVGGGNT 440
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 441 -NWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 499
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG A +GE + +
Sbjct: 500 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFE 559
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F +IFR+R K+E YN +I
Sbjct: 560 EVFQNANFRSFIFRVRVKVETYNDESRI 587
>gi|74214510|dbj|BAE31105.1| unnamed protein product [Mus musculus]
Length = 644
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 207/569 (36%), Positives = 301/569 (52%), Gaps = 110/569 (19%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSAT------------ 372
+ DG+N S MLATQLN ++ G L+ + Q+ ++IV+ + G
Sbjct: 46 MSDGLNTLSSFMLATQLNTLVEGGQLASNCVCQVHKFIVNTLKDGRMQPKPHGNPYGEQS 105
Query: 373 -----NRSVLIILELNIIKPGTEIGFKIGNPQPLNTN---------------TDNSSTQQ 412
++ V+++++L ++K ++G KIGNP P N + ++
Sbjct: 106 VLRKLSQKVVVLMDLEVMKSAEDVGLKIGNPMPYNEGYGQQQQQQQQQQQQAVPSPASAA 165
Query: 413 TPAATN---TNGSNGVHNNVAIPRQASAPV----------------VQTHPIVSLSPYQN 453
TP A+ NGS G+ + A AS P + PI SL+PYQ+
Sbjct: 166 TPPASKPQPQNGSLGMGSTAAKAYGASKPFGKPAGTGLLQPSGGTQSKVVPIASLTPYQS 225
Query: 454 KWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVY 513
KWTI ARVTNK+ IR W+N+RG GKLFS++L+DESGEIRAT FN++ ++F +IE +KVY
Sbjct: 226 KWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVY 285
Query: 514 YISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISP 573
Y S LK ANK+FS++ NDYEM+F + T+V+PC + ++P+V++ F + + +
Sbjct: 286 YFSKGALKIANKQFSAVKNDYEMTFNNETSVLPCEDGH--HLPTVQFDFTGIGDLESKAK 343
Query: 574 DENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNK 633
D +D++G+C + +T K+N + KR+I L+D S VT TLWG++A+ FD S +
Sbjct: 344 DALVDIIGICKSYEDSIKITVKSNNREVAKRNIYLMDMSGKVVTTTLWGEDADKFDGSRQ 403
Query: 634 PVIAVKAARVSEFQG--------------------------------------------- 648
PV+A+K ARVS+F G
Sbjct: 404 PVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQALDGVSISDHRSG 463
Query: 649 -------NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 701
N + E + + LG GDKADY S + R N Y+ACP+QDCNKKVIDQ
Sbjct: 464 GAGGGNTNWKTLHEAKSENLGQGDKADYFSTVAAVVFLRKENCMYQACPTQDCNKKVIDQ 523
Query: 702 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 761
NG+YRCEKC++EF F YR+IL I D+ + WVT FQ AE+ILG +GE E
Sbjct: 524 QNGLYRCEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAILGQNTMYLGELKEK 583
Query: 762 H-----PALKKALFTQYIFRLRAKLEHYN 785
+ + A F + FR+R KLE YN
Sbjct: 584 NEQAFEEVFQNANFRSFTFRIRVKLETYN 612
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 143/328 (43%), Positives = 206/328 (62%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+FS++ NDYEM+F + T+V+PC + ++P+V++ F + + + D +D++G+
Sbjct: 295 ANKQFSAVKNDYEMTFNNETSVLPCEDGH--HLPTVQFDFTGIGDLESKAKDALVDIIGI 352
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + +T K+N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 353 CKSYEDSIKITVKSNNREVAKRNIYLMDMSGKVVTTTLWGEDADKFDGSRQPVMAIKGAR 412
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + +NPDIPE +KL+GWF ++ + VS R+GG GGG
Sbjct: 413 VSDF-GGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQA-LDGVSISDHRSGGAGGGNT 470
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E + + LG GDKADY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 471 -NWKTLHEAKSENLGQGDKADYFSTVAAVVFLRKENCMYQACPTQDCNKKVIDQQNGLYR 529
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC++EF F YR+IL I D+ + WVT FQ AE+ILG +GE E +
Sbjct: 530 CEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAILGQNTMYLGELKEKNEQAFE 589
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F + FR+R KLE YN +I
Sbjct: 590 EVFQNANFRSFTFRIRVKLETYNDESRI 617
>gi|255982530|ref|NP_001157695.1| replication protein A 70 kDa DNA-binding subunit isoform 1 [Mus
musculus]
Length = 644
Score = 369 bits (947), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 207/569 (36%), Positives = 301/569 (52%), Gaps = 110/569 (19%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSAT------------ 372
+ DG+N S MLATQLN ++ G L+ + Q+ ++IV+ + G
Sbjct: 46 MSDGLNTLSSFMLATQLNTLVEGGQLASNCVCQVHKFIVNTLKDGRMQPKPHGNPYGEQS 105
Query: 373 -----NRSVLIILELNIIKPGTEIGFKIGNPQPLNTN---------------TDNSSTQQ 412
++ V+++++L ++K ++G KIGNP P N + ++
Sbjct: 106 VLRKLSQKVVVLMDLEVMKSAEDVGLKIGNPVPYNEGYGQQQQQQQQQQQQAVPSPASAA 165
Query: 413 TPAATN---TNGSNGVHNNVAIPRQASAPV----------------VQTHPIVSLSPYQN 453
TP A+ NGS G+ + A AS P + PI SL+PYQ+
Sbjct: 166 TPPASKPQPQNGSLGMGSTAAKAYGASKPFGKPAGTGLLQPSGGTQSKVVPIASLTPYQS 225
Query: 454 KWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVY 513
KWTI ARVTNK+ IR W+N+RG GKLFS++L+DESGEIRAT FN++ ++F +IE +KVY
Sbjct: 226 KWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVY 285
Query: 514 YISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISP 573
Y S LK ANK+FS++ NDYEM+F + T+V+PC + ++P+V++ F + + +
Sbjct: 286 YFSKGALKIANKQFSAVKNDYEMTFNNETSVLPCEDGH--HLPTVQFDFTGIGDLESKAK 343
Query: 574 DENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNK 633
D +D++G+C + +T K+N + KR+I L+D S VT TLWG++A+ FD S +
Sbjct: 344 DALVDIIGICKSYEDSIKITVKSNNREVAKRNIYLMDMSGKVVTTTLWGEDADKFDGSRQ 403
Query: 634 PVIAVKAARVSEFQG--------------------------------------------- 648
PV+A+K ARVS+F G
Sbjct: 404 PVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQALDGVSISDHRSG 463
Query: 649 -------NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 701
N + E + + LG GDKADY S + R N Y+ACP+QDCNKKVIDQ
Sbjct: 464 GAGGGNTNWKTLHEAKSENLGQGDKADYFSTVAAVVFLRKENCMYQACPTQDCNKKVIDQ 523
Query: 702 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 761
NG+YRCEKC++EF F YR+IL I D+ + WVT FQ AE+ILG +GE E
Sbjct: 524 QNGLYRCEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAILGQNTMYLGELKEK 583
Query: 762 H-----PALKKALFTQYIFRLRAKLEHYN 785
+ + A F + FR+R KLE YN
Sbjct: 584 NEQAFEEVFQNANFRSFTFRIRVKLETYN 612
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 143/328 (43%), Positives = 206/328 (62%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+FS++ NDYEM+F + T+V+PC + ++P+V++ F + + + D +D++G+
Sbjct: 295 ANKQFSAVKNDYEMTFNNETSVLPCEDGH--HLPTVQFDFTGIGDLESKAKDALVDIIGI 352
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + +T K+N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 353 CKSYEDSIKITVKSNNREVAKRNIYLMDMSGKVVTTTLWGEDADKFDGSRQPVMAIKGAR 412
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + +NPDIPE +KL+GWF ++ + VS R+GG GGG
Sbjct: 413 VSDF-GGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQA-LDGVSISDHRSGGAGGGNT 470
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E + + LG GDKADY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 471 -NWKTLHEAKSENLGQGDKADYFSTVAAVVFLRKENCMYQACPTQDCNKKVIDQQNGLYR 529
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC++EF F YR+IL I D+ + WVT FQ AE+ILG +GE E +
Sbjct: 530 CEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAILGQNTMYLGELKEKNEQAFE 589
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F + FR+R KLE YN +I
Sbjct: 590 EVFQNANFRSFTFRIRVKLETYNDESRI 617
>gi|307184253|gb|EFN70726.1| Replication protein A 70 kDa DNA-binding subunit [Camponotus
floridanus]
Length = 607
Score = 366 bits (939), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 210/546 (38%), Positives = 300/546 (54%), Gaps = 88/546 (16%)
Query: 321 GTKKIP--------------DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGV 366
G KKIP DG +NSF ML T LN +IT+ +L+++T+ +I Y ++ V
Sbjct: 27 GYKKIPSSINTDDRYRLLLSDGDRLNSFTMLVTHLNHLITNNSLTQYTVCKILNYALTSV 86
Query: 367 SSGSATNRSVLIILELNIIKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNT------- 419
++ + R +++IL++ ++ PG E+G+KIGNP TNTDN S + +NT
Sbjct: 87 NN-NGKERRIMLILDIEVLFPGNEVGYKIGNP----TNTDNKSRLEYVTTSNTSTATSCQ 141
Query: 420 NGSNGVHNNVAIPRQASAPVVQTH-----PIVSLSPYQNKWTIKARVTNKTPIREWNNAR 474
++ + N+ +S H PI LSPYQN+W IKARVTNK+ I+ W+N+R
Sbjct: 142 TSNSTIEKNILNHDTSSTSFYINHSISTIPIAILSPYQNRWIIKARVTNKSAIKTWSNSR 201
Query: 475 GSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDY 534
G GKLFS+DL+DESGEIR FN +C+ F+ +I+ VYYIS C LK ANK+FS++ NDY
Sbjct: 202 GEGKLFSMDLIDESGEIRCVAFNQQCDNFYHLIDVGNVYYISRCKLKTANKQFSTLKNDY 261
Query: 535 EMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTG 594
EM+ T T + PC+++ N+P ++ F P+ + + IDVLGV ++ +T
Sbjct: 262 EMTITDDTMISPCHKN-CDNIPMQQFDFCPISQVESKEQNNLIDVLGVVTTFNDIQHITQ 320
Query: 595 KTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG--NLLL 652
+T K +KRDI L+D S A + + LWGKEAE FD N P++A+K ARV EF G NL L
Sbjct: 321 RTTGKELIKRDINLIDDSGAMICVALWGKEAEDFDGFNNPILAIKGARVGEFNGGKNLSL 380
Query: 653 M------------------------------------------------REIQDQQLGMG 664
+ RE+ + QLG
Sbjct: 381 INSSVLKKDPDIPEAHKLRKWYAAANHLENVKFLSRSSGGDFNTPLYTFREMTEAQLGGK 440
Query: 665 -DKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLI 723
+ D V I + R N+ YKACP C KK+IDQ+ G++RCEKCNK++ F YRL+
Sbjct: 441 LNFTDLYKVVATINLIRVENSVYKACPIDSCRKKLIDQSTGIFRCEKCNKDYPNFVYRLL 500
Query: 724 LPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLR 778
+ I D T + WV F AE ILG++AQE+GE E+ L +A F ++IF LR
Sbjct: 501 ANMNIADATGNRWVIAFNEVAEKILGISAQELGELKENDNDDYMEKLNEANFKRFIFSLR 560
Query: 779 AKLEHY 784
K E +
Sbjct: 561 VKSEVF 566
Score = 258 bits (660), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 137/326 (42%), Positives = 191/326 (58%), Gaps = 9/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+FS++ NDYEM+ T T + PC+++ N+P ++ F P+ + + IDVLGV
Sbjct: 250 ANKQFSTLKNDYEMTITDDTMISPCHKN-CDNIPMQQFDFCPISQVESKEQNNLIDVLGV 308
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
++ +T +T K +KRDI L+D S A + + LWGKEAE FD N P++A+K AR
Sbjct: 309 VTTFNDIQHITQRTTGKELIKRDINLIDDSGAMICVALWGKEAEDFDGFNNPILAIKGAR 368
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
V EF GGK LSL SSVL +PDIPE HKL+ W++ + E V + GG L
Sbjct: 369 VGEFNGGKNLSLINSSVLKKDPDIPEAHKLRKWYAAANH--LENVKFLSRSSGGDFNTPL 426
Query: 186 LLMREIQDQQLGMG-DKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
RE+ + QLG + D V I + R N+ YKACP C KK+IDQ+ G++RCE
Sbjct: 427 YTFREMTEAQLGGKLNFTDLYKVVATINLIRVENSVYKACPIDSCRKKLIDQSTGIFRCE 486
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PA 299
KCNK++ F YRL+ + I D T + WV F AE ILG++AQE+GE E+
Sbjct: 487 KCNKDYPNFVYRLLANMNIADATGNRWVIAFNEVAEKILGISAQELGELKENDNDDYMEK 546
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
L +A F ++IF LR K E + +I
Sbjct: 547 LNEANFKRFIFSLRVKSEVFQDEMRI 572
>gi|196010750|ref|XP_002115239.1| hypothetical protein TRIADDRAFT_50671 [Trichoplax adhaerens]
gi|190582010|gb|EDV22084.1| hypothetical protein TRIADDRAFT_50671 [Trichoplax adhaerens]
Length = 556
Score = 363 bits (933), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 210/520 (40%), Positives = 293/520 (56%), Gaps = 83/520 (15%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG++ S MLATQLN +T G L I+++ Y + V R VL+IL+L +
Sbjct: 27 LSDGIHAYSSVMLATQLNQRVTSGELDAKAIIKLNNYTCNIVQE----TRKVLVILDLTV 82
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHP 444
+ G+E IG P+P N D S T P +H + ++ +V P
Sbjct: 83 LTCGSETDI-IGQPKPYN---DQSVTNPRPT---------IHPQQNLVDKSENRIV--FP 127
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
I SL+PYQN+WTI+ RVT+K+ IR+W+N+RG GKLFS+DL+DESGEIRAT F D+ +F+
Sbjct: 128 ISSLTPYQNRWTIRTRVTSKSEIRKWSNSRGEGKLFSVDLIDESGEIRATAFRDQVEKFY 187
Query: 505 DMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP 564
D++E +KVYYIS C++K ANK F+SI NDYEM+FT+ T V PC D++ ++P V + FV
Sbjct: 188 DVLEVNKVYYISRCSIKTANKNFTSIKNDYEMTFTNETAVEPC--DDIASLPKVSFNFVR 245
Query: 565 LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE 624
+ I + IDV+GV A ++ ++ K+N++ KRDI LVD S V +TLWG
Sbjct: 246 IGDIENQPAERMIDVVGVVKSADDVVTINTKSNRQVN-KRDIELVDDSGKVVRLTLWGTN 304
Query: 625 AETFDASNKPVIAVKAARVSEFQGNLL------------------LMR------------ 654
AE FD S PV+AV+ ARV+EF G L ++R
Sbjct: 305 AEEFDGSQFPVVAVRGARVTEFGGRSLSVVGSSQLMTNPDIPEAHILRGWFDVQGKDQEL 364
Query: 655 -----------------------EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS 691
+I + LG +KADY +++ I R N YKACP
Sbjct: 365 VSISTKRGDIGSPGFSGNWKNISDIHGENLGQQEKADYFNLKATIIYIRKENLMYKACPK 424
Query: 692 QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVT 751
+DCNKKVIDQ G YRCEKCN+ F F YRL++ I D T S W+T FQ E++L T
Sbjct: 425 EDCNKKVIDQ-GGSYRCEKCNQTFPDFKYRLMISASIVDSTGSNWLTFFQETGEAMLKCT 483
Query: 752 AQEVG------ESTEDHPALKKALFTQYIFRLRAKLEHYN 785
AQ++G ES +H + +ALF YI ++RAK+E +N
Sbjct: 484 AQQLGAWKENDESKYEH-TINEALFQSYILKVRAKMESFN 522
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/328 (44%), Positives = 203/328 (61%), Gaps = 14/328 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK F+SI NDYEM+FT+ T V PC D++ ++P V + FV + I + IDV+GV
Sbjct: 206 ANKNFTSIKNDYEMTFTNETAVEPC--DDIASLPKVSFNFVRIGDIENQPAERMIDVVGV 263
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
A ++ ++ K+N++ KRDI LVD S V +TLWG AE FD S PV+AV+ AR
Sbjct: 264 VKSADDVVTINTKSNRQVN-KRDIELVDDSGKVVRLTLWGTNAEEFDGSQFPVVAVRGAR 322
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGG-GAAG 183
V+EF GG++LS+ SS L NPDIPE H L+GWF Q + +S + G +G G +G
Sbjct: 323 VTEF-GGRSLSVVGSSQLMTNPDIPEAHILRGWFDVQGKDQELVSISTKRGDIGSPGFSG 381
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
N + +I + LG +KADY +++ I R N YKACP +DCNKKVIDQ G YRC
Sbjct: 382 NWKNISDIHGENLGQQEKADYFNLKATIIYIRKENLMYKACPKEDCNKKVIDQG-GSYRC 440
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG------ESTEDH 297
EKCN+ F F YRL++ I D T S W+T FQ E++L TAQ++G ES +H
Sbjct: 441 EKCNQTFPDFKYRLMISASIVDSTGSNWLTFFQETGEAMLKCTAQQLGAWKENDESKYEH 500
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ +ALF YI ++RAK+E +N ++
Sbjct: 501 -TINEALFQSYILKVRAKMESFNDENRL 527
>gi|112983132|ref|NP_001036938.1| replication protein A1 [Bombyx mori]
gi|55700848|dbj|BAD69789.1| Replication protein A large subunit [Bombyx mori]
Length = 598
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 198/519 (38%), Positives = 294/519 (56%), Gaps = 59/519 (11%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG SFAMLATQLN ++ G L++++++Q+ +++ + + + + V+IIL L I
Sbjct: 45 VSDGKYTYSFAMLATQLNIMLLSGELTDYSVIQVDQFVTTLLKNVGKGEKRVIIILALTI 104
Query: 385 IKPGTEIGFKIGNPQPLNTN-TDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTH 443
I G ++ KIGNPQP + T + PA + V A + V T+
Sbjct: 105 IANGRDVRHKIGNPQPWSEEATSAQRPEPKPAPVTPKFTAKVEPKAANLDSSMLSVKMTN 164
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI SLSPYQNKW I+ARV +KTPIR W+NA+G KLFS+ DE+GEIRAT F +EC+ F
Sbjct: 165 PISSLSPYQNKWVIRARVMSKTPIRTWSNAKGERKLFSMYPCDETGEIRATAFKNECDTF 224
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+DMI+ DKVYYIS C +K ANKKF+++ NDYEM+FT T V DE +P+V+Y F+
Sbjct: 225 YDMIQVDKVYYISRCAIKTANKKFTTLKNDYEMTFTAETVVGEYVGDESA-VPTVQYDFL 283
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
P+ IA + ID++ VC A+++ +T K+ K KR++ LVD S +VT+TLWG
Sbjct: 284 PISEIANKETETLIDLIDVCKSASDVQELTAKSTGKLLKKREVMLVDASGGAVTLTLWGN 343
Query: 624 EAETFDASNKPVIAVKAARVSEFQGNLLL------------------------------- 652
EAE F+ + P++AVK AR++EF G+ L
Sbjct: 344 EAEKFEGNTNPILAVKGARLTEFNGSKSLSCLSSTMLRLNPDVPEAHKLRGWYDNGGADA 403
Query: 653 ---------------------MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS 691
E + +QLG G+K DY S+ G++ N YKACP
Sbjct: 404 DIVNISAKSGNFTGGSNEWISFSEAESRQLGTGEKGDYYSLLGVLTFTFSENAVYKACPQ 463
Query: 692 QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVT 751
+ CNKK++DQ NG++RCEKCN+E+ + +R++L + D T VTLF AE++LG +
Sbjct: 464 EQCNKKLVDQENGLFRCEKCNREYPNYKHRILLAANVSDPTGDQRVTLFNEAAETMLGKS 523
Query: 752 AQEVG-----ESTEDHPALKKALFTQYIFRLRAKLEHYN 785
A+E+ + E + + F ++F+ R K+E++N
Sbjct: 524 AEEIARLSEYDKNEYNKIFDEVKFKTFVFKFRTKMENFN 562
Score = 265 bits (677), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 128/326 (39%), Positives = 201/326 (61%), Gaps = 8/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANKKF+++ NDYEM+FT T V DE +P+V+Y F+P+ IA + ID++ V
Sbjct: 244 ANKKFTTLKNDYEMTFTAETVVGEYVGDESA-VPTVQYDFLPISEIANKETETLIDLIDV 302
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C A+++ +T K+ K KR++ LVD S +VT+TLWG EAE F+ + P++AVK AR
Sbjct: 303 CKSASDVQELTAKSTGKLLKKREVMLVDASGGAVTLTLWGNEAEKFEGNTNPILAVKGAR 362
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST-QTNTRFEPVSQRTGGMGGGAAGN 184
++EF G K+LS S++L LNPD+PE HKL+GW+ + +S ++G GG +
Sbjct: 363 LTEFNGSKSLSCLSSTMLRLNPDVPEAHKLRGWYDNGGADADIVNISAKSGNFTGG-SNE 421
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ E + +QLG G+K DY S+ G++ N YKACP + CNKK++DQ NG++RCE
Sbjct: 422 WISFSEAESRQLGTGEKGDYYSLLGVLTFTFSENAVYKACPQEQCNKKLVDQENGLFRCE 481
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG-----ESTEDHPA 299
KCN+E+ + +R++L + D T VTLF AE++LG +A+E+ + E +
Sbjct: 482 KCNREYPNYKHRILLAANVSDPTGDQRVTLFNEAAETMLGKSAEEIARLSEYDKNEYNKI 541
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ F ++F+ R K+E++N ++
Sbjct: 542 FDEVKFKTFVFKFRTKMENFNDESRL 567
>gi|348505238|ref|XP_003440168.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Oreochromis niloticus]
Length = 606
Score = 362 bits (928), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 209/552 (37%), Positives = 305/552 (55%), Gaps = 91/552 (16%)
Query: 315 KLEHYNGTKK----IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGS 370
KL+ NG + + DG + S ML+TQLN + + L+ I +KR++ + + G
Sbjct: 30 KLDGGNGPSRFRVMMSDGRHTLSSFMLSTQLNHMAEENILAPNCICNLKRHVTNILKDG- 88
Query: 371 ATNRSVLIILELNIIKPGTEIGFKIGNPQPLN---------------------TNTDNSS 409
R V+IILE+++IKP ++ +IG+P P N +
Sbjct: 89 ---RRVVIILEIDVIKPAKDVAGRIGDPTPYTEGQSKGPQSAPVPEIRPPLQPQNRNEGE 145
Query: 410 TQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIRE 469
Q P+++ + + + S+ VV PI SL+PYQ+KWTI+ARVTNK+ IR
Sbjct: 146 LWQPPSSSAQDFGKKAPSVMPNTPGGSSKVV---PIASLNPYQSKWTIRARVTNKSAIRT 202
Query: 470 WNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSS 529
W+N+RG GKLFS++++DESGEIR T FN E ++F +IE KVYYIS +LK ANK+++S
Sbjct: 203 WSNSRGDGKLFSMEIVDESGEIRVTGFNQEVDKFFSLIEAGKVYYISKGSLKIANKQYTS 262
Query: 530 INNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAEL 589
+ NDYEM+ +T+IPC ED ++P V+ FV + + D +DV+GVC ++
Sbjct: 263 VKNDYEMTLNGESTIIPC-EDSC-DVPMVQCDFVSISDLENRDKDAIVDVIGVCKSVDDI 320
Query: 590 SSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG- 648
+ +T K+N++ KR ++L+D S VT+TLWG+EAE FD S++PVIA+K A++S+F G
Sbjct: 321 TRLTTKSNREV-SKRTLSLMDMSGKVVTVTLWGEEAEKFDGSSQPVIAIKGAKLSDFGGR 379
Query: 649 --------------------------------------------------NLLLMREIQD 658
N + +++
Sbjct: 380 SLSASFSSTLMINPDIPEAYKLRGWYDKEGHAMDGQSLTEVKGGSGGGNTNWKSLADVKT 439
Query: 659 QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTF 718
+ LG GDKADY + I R N Y+ACPSQDCNKKV+DQ NGM+RCEKC+KEF F
Sbjct: 440 EHLGHGDKADYYTCVATIVFLRKENCLYQACPSQDCNKKVVDQQNGMFRCEKCDKEFPNF 499
Query: 719 TYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----LKKALFTQY 773
YRLIL I D+ ++ WVT FQ AE+ILG A +G+ + + A + A F +
Sbjct: 500 KYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKDSNEAAFDEVFQHANFNTF 559
Query: 774 IFRLRAKLEHYN 785
+FR R KLE YN
Sbjct: 560 VFRNRVKLETYN 571
Score = 281 bits (719), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 145/326 (44%), Positives = 211/326 (64%), Gaps = 11/326 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+++S+ NDYEM+ +T+IPC ED ++P V+ FV + + D +DV+GV
Sbjct: 256 ANKQYTSVKNDYEMTLNGESTIIPC-EDSC-DVPMVQCDFVSISDLENRDKDAIVDVIGV 313
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C +++ +T K+N++ KR ++L+D S VT+TLWG+EAE FD S++PVIA+K A+
Sbjct: 314 CKSVDDITRLTTKSNREV-SKRTLSLMDMSGKVVTVTLWGEEAEKFDGSSQPVIAIKGAK 372
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRTGGMGGGAAGN 184
+S+F GG++LS S SS L +NPDIPE +KL+GW+ + + + +++ GG GGG N
Sbjct: 373 LSDF-GGRSLSASFSSTLMINPDIPEAYKLRGWYDKEGHAMDGQSLTEVKGGSGGGNT-N 430
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ +++ + LG GDKADY + I R N Y+ACPSQDCNKKV+DQ NGM+RCE
Sbjct: 431 WKSLADVKTEHLGHGDKADYYTCVATIVFLRKENCLYQACPSQDCNKKVVDQQNGMFRCE 490
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA----- 299
KC+KEF F YRLIL I D+ ++ WVT FQ AE+ILG A +G+ + + A
Sbjct: 491 KCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKDSNEAAFDEV 550
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F ++FR R KLE YN +I
Sbjct: 551 FQHANFNTFVFRNRVKLETYNDESRI 576
>gi|322783307|gb|EFZ10882.1| hypothetical protein SINV_05412 [Solenopsis invicta]
Length = 587
Score = 361 bits (927), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 200/519 (38%), Positives = 298/519 (57%), Gaps = 66/519 (12%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG +NSF MLATQLN++I + L+EF+I +I Y +S V++ + + V++IL++ +
Sbjct: 34 VSDGEKLNSFTMLATQLNNLIENDILNEFSICKITNYCLSSVNN-NGKEKCVMLILDIEV 92
Query: 385 IKPGTEIGFKIGNPQ--PLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQT 442
I G E+G +IGNP L + D ST T + NGS N+ AS+ + +T
Sbjct: 93 IVSGEEVGRRIGNPTNIELKSEQDTPSTSTTTTVHHQNGSTRTGNS----NHASSDI-RT 147
Query: 443 HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNR 502
I +LSPYQN+W IKARV NK+PI+ W+N+RG GK FS+DL+D+SGEIR T F + ++
Sbjct: 148 TQIAALSPYQNRWVIKARVINKSPIKTWSNSRGEGKFFSMDLIDKSGEIRCTAFKEMVDK 207
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F+D+I VYYIS CTLK ANK+++++ NDYEMS T T ++PC+ D ++P+++Y F
Sbjct: 208 FYDLIVAGNVYYISRCTLKMANKQYNTMKNDYEMSVTSDTGIVPCH-DNSNDIPTLQYNF 266
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
P+ + ++ +DVLGV ++ T + + +KRDI++VD S VT+TLW
Sbjct: 267 SPISQVESKEKNDLLDVLGVVTTIGDVQHFTARATGRELIKRDISIVDDSGTMVTVTLWR 326
Query: 623 KEAETFDASNKPVIAVKAARVSEFQGN--------------------------------- 649
+AE FDASN +IA+K A V EF G
Sbjct: 327 TQAEEFDASNNTIIAIKRASVGEFNGRKNLSLTMSSIIEKDPDIPEAHRLRGWYTAVGHS 386
Query: 650 ------------------LLLMREIQDQQLGMG-DKADYCSVRGIIQVFRGSNTTYKACP 690
L +E D +LG + D +V I+ + N+ Y+ACP
Sbjct: 387 ETAKSLSRVGGSTDFNGPLYTFQEATDARLGEKMNLPDSFTVVATIKQIKTENSLYRACP 446
Query: 691 SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGV 750
++C KK+IDQ+NG++RCEKCNKE+ FTYRL+ + + D T S W+T F EAE ILG+
Sbjct: 447 VENCKKKLIDQDNGIFRCEKCNKEYPNFTYRLLANMELADATGSRWITAFNEEAEKILGM 506
Query: 751 TAQEVGESTEDHP-----ALKKALFTQYIFRLRAKLEHY 784
+AQE+GE E+ + +A F ++F L A+ E +
Sbjct: 507 SAQELGELKENDKDAYLQKIGEATFKTFMFNLEARSEVF 545
Score = 259 bits (661), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 130/326 (39%), Positives = 199/326 (61%), Gaps = 8/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+++++ NDYEMS T T ++PC+ D ++P+++Y F P+ + ++ +DVLGV
Sbjct: 228 ANKQYNTMKNDYEMSVTSDTGIVPCH-DNSNDIPTLQYNFSPISQVESKEKNDLLDVLGV 286
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
++ T + + +KRDI++VD S VT+TLW +AE FDASN +IA+K A
Sbjct: 287 VTTIGDVQHFTARATGRELIKRDISIVDDSGTMVTVTLWRTQAEEFDASNNTIIAIKRAS 346
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
V EF G K LSL+MSS++ +PDIPE H+L+GW++ ++ R GG G L
Sbjct: 347 VGEFNGRKNLSLTMSSIIEKDPDIPEAHRLRGWYTAVGHSETAKSLSRVGG-STDFNGPL 405
Query: 186 LLMREIQDQQLGMG-DKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+E D +LG + D +V I+ + N+ Y+ACP ++C KK+IDQ+NG++RCE
Sbjct: 406 YTFQEATDARLGEKMNLPDSFTVVATIKQIKTENSLYRACPVENCKKKLIDQDNGIFRCE 465
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----A 299
KCNKE+ FTYRL+ + + D T S W+T F EAE ILG++AQE+GE E+
Sbjct: 466 KCNKEYPNFTYRLLANMELADATGSRWITAFNEEAEKILGMSAQELGELKENDKDAYLQK 525
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ +A F ++F L A+ E + +I
Sbjct: 526 IGEATFKTFMFNLEARSEVFQDAMRI 551
>gi|405970353|gb|EKC35267.1| Replication protein A 70 kDa DNA-binding subunit [Crassostrea
gigas]
Length = 624
Score = 361 bits (927), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 198/569 (34%), Positives = 303/569 (53%), Gaps = 116/569 (20%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG S AMLATQLN ++ DG L ++Q+ +Y+ + + +R V+I+L+L++
Sbjct: 31 LSDGEVSYSHAMLATQLNSLM-DGELDNLAVIQVDKYLCNTIQG----DRRVMILLDLHV 85
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQ-----QTPAATNTNGSNGVHNNVAIPRQ----- 434
++ G+E+G +IGNPQ +T Q A+ + G+ HN+ P Q
Sbjct: 86 LQRGSEVGQRIGNPQQYKAAATQGTTAEHRNPQQYKASASQGTTAEHNSAQCPPQMPKQE 145
Query: 435 -----------------------------------------ASAPVVQTHPIVSLSPYQN 453
+ H I SL+PYQN
Sbjct: 146 GGGQSFIGTVSDKQVNNNIKKENMNGNSKGGYSLKTNNSGGTPGGTSRVHKIDSLTPYQN 205
Query: 454 KWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVY 513
+W I+ARVT K+ IR W+N+RG GKLFS+ L D+S EIRAT FND ++F++++E +KVY
Sbjct: 206 RWKIRARVTQKSGIRTWSNSRGEGKLFSVTLTDDSAEIRATGFNDAVDKFYELLEVNKVY 265
Query: 514 YISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISP 573
Y S TLK ANK+++++ NDYEM+F T + PC++D ++P++ + FV + + +P
Sbjct: 266 YFSKATLKTANKQYTTVQNDYEMTFNPDTIIEPCDDDS--SLPTMNFNFVKINELESKAP 323
Query: 574 DENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNK 633
IDV+GV + +++++ GK +QK KRD+ +VDQS SV +TLWG +A+ FD S
Sbjct: 324 TSLIDVIGVVKNCGDVTTIIGKQSQKEITKRDLQIVDQSGMSVNLTLWGADAQQFDGSGH 383
Query: 634 PVIAVKAARVSEFQGNLLL------------MRE-------------------------- 655
PVIAVK A+VS++ G L +RE
Sbjct: 384 PVIAVKGAKVSDYGGRSLSAMASSQIIHNPDLREGHMLKGWFEHDGHNMDFHGYKNDGMG 443
Query: 656 --------------IQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 701
I+ + +G DK +Y + + + R N Y+ACP++ CNKKV+DQ
Sbjct: 444 GGGGGSTNWKCFAEIKSENIG-ADKPEYFTTKATVLFLRKENCMYQACPTESCNKKVVDQ 502
Query: 702 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG---ES 758
NGMYRCEKC +EF + +R+IL +GD++++ WVT FQ AE++LG+ A ++G +S
Sbjct: 503 GNGMYRCEKCAREFPNYKWRMILSANLGDYSDNQWVTCFQESAEAMLGIKADDLGALKDS 562
Query: 759 TED--HPALKKALFTQYIFRLRAKLEHYN 785
E +A F YIF+ RAK+E YN
Sbjct: 563 NEQAFDQVFTEACFKSYIFKFRAKVETYN 591
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 133/326 (40%), Positives = 203/326 (62%), Gaps = 10/326 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+++++ NDYEM+F T + PC++D ++P++ + FV + + +P IDV+GV
Sbjct: 275 ANKQYTTVQNDYEMTFNPDTIIEPCDDDS--SLPTMNFNFVKINELESKAPTSLIDVIGV 332
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ +++++ GK +QK KRD+ +VDQS SV +TLWG +A+ FD S PVIAVK A+
Sbjct: 333 VKNCGDVTTIIGKQSQKEITKRDLQIVDQSGMSVNLTLWGADAQQFDGSGHPVIAVKGAK 392
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAGN 184
VS++ GG++LS SS + NPD+ E H L+GWF N F G GGG + N
Sbjct: 393 VSDY-GGRSLSAMASSQIIHNPDLREGHMLKGWFEHDGHNMDFHGYKNDGMGGGGGGSTN 451
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
EI+ + +G DK +Y + + + R N Y+ACP++ CNKKV+DQ NGMYRCE
Sbjct: 452 WKCFAEIKSENIG-ADKPEYFTTKATVLFLRKENCMYQACPTESCNKKVVDQGNGMYRCE 510
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG---ESTED--HPA 299
KC +EF + +R+IL +GD++++ WVT FQ AE++LG+ A ++G +S E
Sbjct: 511 KCAREFPNYKWRMILSANLGDYSDNQWVTCFQESAEAMLGIKADDLGALKDSNEQAFDQV 570
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+A F YIF+ RAK+E YN ++
Sbjct: 571 FTEACFKSYIFKFRAKVETYNDESRL 596
>gi|167621451|ref|NP_956105.2| replication protein A 70 kDa DNA-binding subunit [Danio rerio]
gi|82185887|sp|Q6NY74.1|RFA1_DANRE RecName: Full=Replication protein A 70 kDa DNA-binding subunit;
Short=RP-A p70; AltName: Full=Replication factor A
protein 1; Short=RF-A protein 1
gi|44890707|gb|AAH66711.1| Rpa1 protein [Danio rerio]
gi|49619041|gb|AAT68105.1| replication protein A 70kd subunit [Danio rerio]
Length = 601
Score = 360 bits (924), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 203/544 (37%), Positives = 305/544 (56%), Gaps = 80/544 (14%)
Query: 315 KLEHYNGTKK----IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGS 370
K++ NG + + DG++ S ML+TQLN + L+ + +KR + + + G
Sbjct: 31 KIDGGNGVSRFRVMMSDGLHTMSSFMLSTQLNPMAEQNQLATNCVCVLKRSVTNVLKDG- 89
Query: 371 ATNRSVLIILELNIIKPGTEIGFKIGNPQP-LNTNTDNSSTQQTPAATNTNGSNGVHNNV 429
R V++IL++ ++K ++ KIG+P P + + ST P A NG +
Sbjct: 90 ---RRVVVILDIEVLKSADQMPGKIGDPTPYVEGQSKAPSTAPAPTARPLQPQNGSDGST 146
Query: 430 AIP-------RQASAPVV-----QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSG 477
P + +AP + PI SL+PYQ+KWTI+ARVTNK+ IR W+N+RG G
Sbjct: 147 YRPSAQSFGKKPMAAPNTPGGSSKVVPIASLNPYQSKWTIRARVTNKSAIRTWSNSRGDG 206
Query: 478 KLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMS 537
KLFS++L+DESGEIRAT FN+E ++F +IE+ KV+YIS TLK ANK+FSS+ NDYEM+
Sbjct: 207 KLFSMELVDESGEIRATGFNNEVDKFFSLIEQGKVFYISKGTLKIANKQFSSLKNDYEMT 266
Query: 538 FTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTN 597
T++IPC ++ ++P ++ FV + + D +DV+GVC +A +++ + K N
Sbjct: 267 LNGETSIIPC--EDSNDVPMLQCDFVSIADLESREKDTILDVIGVCKNAEDVARIMTK-N 323
Query: 598 QKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL------ 651
+ KR+I L+D S + +T+WG +AETFD S +P++A+K AR+S+F G L
Sbjct: 324 SREVSKRNIQLIDMSGRVIQLTMWGSDAETFDGSGQPILAIKGARLSDFGGRSLSTLYSS 383
Query: 652 ---------------------------------------------LMREIQDQQLGMGDK 666
+ E++++ LG GDK
Sbjct: 384 TVMINPDIPEAYKLRGWYDKEGHALDGQSMTELRGPGGGGNTNWKTLAEVKNEHLGHGDK 443
Query: 667 ADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPV 726
ADY S I R N Y+ACPS+DCNKKV+DQ NGM+RCEKC+KEF F YRL+L
Sbjct: 444 ADYFSCIATIVYIRKENCLYQACPSKDCNKKVVDQQNGMFRCEKCDKEFPDFKYRLMLSA 503
Query: 727 MIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKL 781
I D+ ++ WVT FQ+ AE++LG + +G+ + + A + A F ++FR R KL
Sbjct: 504 NIADFGDNQWVTCFQDTAETLLGQNSSYLGQLKDTNEAAFDEVFQHANFNTFVFRNRVKL 563
Query: 782 EHYN 785
E YN
Sbjct: 564 ETYN 567
Score = 275 bits (702), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 136/325 (41%), Positives = 204/325 (62%), Gaps = 9/325 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+FSS+ NDYEM+ T++IPC ++ ++P ++ FV + + D +DV+GV
Sbjct: 252 ANKQFSSLKNDYEMTLNGETSIIPC--EDSNDVPMLQCDFVSIADLESREKDTILDVIGV 309
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C +A +++ + K N + KR+I L+D S + +T+WG +AETFD S +P++A+K AR
Sbjct: 310 CKNAEDVARIMTK-NSREVSKRNIQLIDMSGRVIQLTMWGSDAETFDGSGQPILAIKGAR 368
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
+S+F GG++LS SS + +NPDIPE +KL+GW+ + + G GGG N
Sbjct: 369 LSDF-GGRSLSTLYSSTVMINPDIPEAYKLRGWYDKEGHALDGQSMTELRGPGGGGNTNW 427
Query: 186 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 245
+ E++++ LG GDKADY S I R N Y+ACPS+DCNKKV+DQ NGM+RCEK
Sbjct: 428 KTLAEVKNEHLGHGDKADYFSCIATIVYIRKENCLYQACPSKDCNKKVVDQQNGMFRCEK 487
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----L 300
C+KEF F YRL+L I D+ ++ WVT FQ+ AE++LG + +G+ + + A
Sbjct: 488 CDKEFPDFKYRLMLSANIADFGDNQWVTCFQDTAETLLGQNSSYLGQLKDTNEAAFDEVF 547
Query: 301 KKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F ++FR R KLE YN +I
Sbjct: 548 QHANFNTFVFRNRVKLETYNDESRI 572
>gi|213512619|ref|NP_001135257.1| Replication protein A 70 kDa DNA-binding subunit [Salmo salar]
gi|209155456|gb|ACI33960.1| Replication protein A 70 kDa DNA-binding subunit [Salmo salar]
Length = 607
Score = 358 bits (920), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 206/537 (38%), Positives = 295/537 (54%), Gaps = 86/537 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG + S ML+TQLN + D L+ I Q+KR + + + G R V++IL++ +
Sbjct: 46 MSDGQHSMSSFMLSTQLNPMAEDNRLAPNCICQLKRNVTNVLKDG----RRVVVILDMEV 101
Query: 385 IKPGTEIGFKIGNPQPL-------NTNTDNSSTQQTPAATNTNGS------NGVHNNVAI 431
+K E+ KIG PQP + N S P +GS +
Sbjct: 102 VKSADEVAGKIGEPQPYVEGQSKAPQSAPNPSVHPLPPQNGIDGSMNKGPSREFGGKKGM 161
Query: 432 PRQA-------SAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDL 484
P A SA VV PI SL+PYQ+KWTI+ARVTNK+ IR W+N+RG GKLFS+++
Sbjct: 162 PPSAMPSTPGGSAKVV---PIASLNPYQSKWTIRARVTNKSGIRTWSNSRGDGKLFSMEI 218
Query: 485 LDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTV 544
+DESGEIR T F E ++F+ +IE KV+YIS +LK ANK++SS+ NDYEM+ +T+
Sbjct: 219 VDESGEIRVTAFTQEVDKFYSIIETGKVFYISKGSLKIANKQYSSLKNDYEMTLNGESTI 278
Query: 545 IPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKR 604
IPC + + ++P V+ FV + + D +DV+GVC ++++ + K N++ KR
Sbjct: 279 IPCEDTQ--DVPMVQCNFVSIADLQAREKDTILDVIGVCKSVSDVTRLNTKNNREVS-KR 335
Query: 605 DITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL------------- 651
+ L+DQS V +TLWG+EAE FD S +P++A+K A++S++ G L
Sbjct: 336 TLNLMDQSGKLVEVTLWGEEAENFDGSGQPILAIKGAKLSDYGGRSLSASFSSTVMVNPD 395
Query: 652 --------------------------------------LMREIQDQQLGMGDKADYCSVR 673
+ +I+ + LG GDKADY S
Sbjct: 396 IPEAYKLRGWYDKEGHSMDGQSLTEARTGGGGGNTNWKTLADIKTEHLGHGDKADYFSCI 455
Query: 674 GIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTN 733
I R N Y+ACPSQDCNKKV+DQ NGM+RCEKC+KEF F YRLIL I D+ +
Sbjct: 456 ATIVYIRKENCLYQACPSQDCNKKVVDQQNGMFRCEKCDKEFPNFKYRLILSANIADYGD 515
Query: 734 SVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQ-----YIFRLRAKLEHYN 785
+ WVT FQ AE+ILG A +G+ + + A + +F Q ++FR R KLE YN
Sbjct: 516 NQWVTCFQESAEAILGQNAAYLGQLKDSNEAAFEEIFQQANFHTFVFRNRVKLETYN 572
Score = 265 bits (678), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 139/325 (42%), Positives = 204/325 (62%), Gaps = 9/325 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK++SS+ NDYEM+ +T+IPC + + ++P V+ FV + + D +DV+GV
Sbjct: 257 ANKQYSSLKNDYEMTLNGESTIIPCEDTQ--DVPMVQCNFVSIADLQAREKDTILDVIGV 314
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C ++++ + K N++ KR + L+DQS V +TLWG+EAE FD S +P++A+K A+
Sbjct: 315 CKSVSDVTRLNTKNNREVS-KRTLNLMDQSGKLVEVTLWGEEAENFDGSGQPILAIKGAK 373
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
+S++ GG++LS S SS + +NPDIPE +KL+GW+ + ++ GGG N
Sbjct: 374 LSDY-GGRSLSASFSSTVMVNPDIPEAYKLRGWYDKEGHSMDGQSLTEARTGGGGGNTNW 432
Query: 186 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 245
+ +I+ + LG GDKADY S I R N Y+ACPSQDCNKKV+DQ NGM+RCEK
Sbjct: 433 KTLADIKTEHLGHGDKADYFSCIATIVYIRKENCLYQACPSQDCNKKVVDQQNGMFRCEK 492
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALF 305
C+KEF F YRLIL I D+ ++ WVT FQ AE+ILG A +G+ + + A + +F
Sbjct: 493 CDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKDSNEAAFEEIF 552
Query: 306 TQ-----YIFRLRAKLEHYNGTKKI 325
Q ++FR R KLE YN +I
Sbjct: 553 QQANFHTFVFRNRVKLETYNDESRI 577
>gi|156545235|ref|XP_001604531.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Nasonia vitripennis]
Length = 595
Score = 354 bits (909), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 189/523 (36%), Positives = 294/523 (56%), Gaps = 66/523 (12%)
Query: 324 KIPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELN 383
+I DG +++ +LA+QLN +I + LSEF+I+++ +Y S + + R ++ I++
Sbjct: 42 QINDGCTESTYVILASQLNHLIENRNLSEFSIMKLNQYSTSMIRGPDNSERKIITIVDCE 101
Query: 384 IIKPGTEIG--FKIGN---PQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAP 438
I+ PG +IG FK N + + ++ Q A N + N + ++AP
Sbjct: 102 ILVPGHQIGKNFKKNNTKVEEAVPVTRIPTNQQVARPAPQLNNLVDIMNPIM---NSNAP 158
Query: 439 VVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFND 498
T PI +LSPY ++W IKARVTNK+ IR W+N+RG GK FS+DL+DES EIR T F D
Sbjct: 159 AFTT-PIAALSPYHSRWVIKARVTNKSQIRTWSNSRGEGKFFSMDLIDESSEIRCTAFRD 217
Query: 499 ECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV 558
+C++F+D+IE DKVYYIS C LKPANK+F+ + NDYEMS T+ + + CNE E +PS+
Sbjct: 218 QCDKFYDLIEIDKVYYISKCQLKPANKQFNHLRNDYEMSLTYDSQIAICNE-ETETIPSL 276
Query: 559 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM 618
++ FVP+ TI + + ID+LG+ ++L + T + + K+D+ +VD++ + +
Sbjct: 277 QFNFVPISTIETMPTNGIIDILGIVKTCSDLQTFTKRLTGQELTKKDVGVVDENNYLINV 336
Query: 619 TLWGKEAETFDASNKPVIAVKAARVSEF-------------------------------- 646
TLW ++A+ FD S PV+A+K A++ EF
Sbjct: 337 TLWAEKAQNFDGSGNPVVAIKGAKIGEFNGGKTLSLLPTSILRVNPDIPTAHKLRSWFST 396
Query: 647 -------------------QGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYK 687
G+LL E+ + +LG + + + + + N YK
Sbjct: 397 IGATTESHSLSRTSNDGGINGSLLTFSEVDENKLGHPHMPCVYTTKATVNLIKAENALYK 456
Query: 688 ACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESI 747
+CPS++C KKV+DQ+NGMYRCEKC K++ TFTYRL++ + DWT + W+ F +EAE +
Sbjct: 457 SCPSENCKKKVVDQSNGMYRCEKCAKDYPTFTYRLLVNAYLVDWTGNQWIAAFNDEAEIL 516
Query: 748 LGVTAQEVGESTE-DHPALKKAL----FTQYIFRLRAKLEHYN 785
L + E+GE E D A K + F YIF++R K E +N
Sbjct: 517 LNGSGPELGELKEKDFDAYLKKIAETSFKSYIFKIRVKQETFN 559
Score = 268 bits (685), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 132/330 (40%), Positives = 201/330 (60%), Gaps = 7/330 (2%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK+F+ + NDYEMS T+ + + CNE E +PS+++ FVP+ TI + + ID+LG
Sbjct: 241 PANKQFNHLRNDYEMSLTYDSQIAICNE-ETETIPSLQFNFVPISTIETMPTNGIIDILG 299
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+ ++L + T + + K+D+ +VD++ + +TLW ++A+ FD S PV+A+K A
Sbjct: 300 IVKTCSDLQTFTKRLTGQELTKKDVGVVDENNYLINVTLWAEKAQNFDGSGNPVVAIKGA 359
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGN 184
++ EF GGKTLSL +S+L +NPDIP HKL+ WFST T RT GG G+
Sbjct: 360 KIGEFNGGKTLSLLPTSILRVNPDIPTAHKLRSWFSTIGATTESHSLSRTSN-DGGINGS 418
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
LL E+ + +LG + + + + + N YK+CPS++C KKV+DQ+NGMYRCE
Sbjct: 419 LLTFSEVDENKLGHPHMPCVYTTKATVNLIKAENALYKSCPSENCKKKVVDQSNGMYRCE 478
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPALKKA 303
KC K++ TFTYRL++ + DWT + W+ F +EAE +L + E+GE E D A K
Sbjct: 479 KCAKDYPTFTYRLLVNAYLVDWTGNQWIAAFNDEAEILLNGSGPELGELKEKDFDAYLKK 538
Query: 304 L----FTQYIFRLRAKLEHYNGTKKIPDGV 329
+ F YIF++R K E +N ++ V
Sbjct: 539 IAETSFKSYIFKIRVKQETFNDETRLKSTV 568
>gi|322778947|gb|EFZ09361.1| hypothetical protein SINV_08959 [Solenopsis invicta]
Length = 572
Score = 353 bits (905), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 195/520 (37%), Positives = 293/520 (56%), Gaps = 71/520 (13%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG +NSF MLATQLN++I D L+EF+I +I Y +S VS R V++IL++ +
Sbjct: 24 VSDGEKLNSFTMLATQLNNLIEDDILNEFSICKITNYYLSSVSKNGKEKR-VMLILDIEV 82
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAI----PRQASAPVV 440
+ G ++G +IGNP N + P +T+ + VH+ + AS+ +
Sbjct: 83 VVSGEKVGGRIGNPT-------NIELKSEPDTPSTSTTTTVHHQSSTRTGNSNHASSDI- 134
Query: 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDEC 500
+T PI +LSPYQN+W IKARV +K+ I+ W+++RG GK F + L+DESGEIR F +
Sbjct: 135 RTTPIAALSPYQNRWVIKARVIHKSLIKTWSDSRGEGKFFFMGLIDESGEIRCKAFGEMV 194
Query: 501 NRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKY 560
++F+D+I VYYIS CTLK ANK+++S+ NDYEM T T ++PC D ++P+++Y
Sbjct: 195 DKFYDLIVAGNVYYISRCTLKTANKQYNSMKNDYEMLMTSDTEIVPC-RDSNNDIPTLQY 253
Query: 561 CFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTL 620
F P+ + ++ +DVLGV ++ T +T ++ +KR+I++VD S VT+TL
Sbjct: 254 NFSPISQVEHKEKNDLLDVLGVVTTVGDVQHFTARTGRE-LIKRNISIVDDSDTMVTVTL 312
Query: 621 WGKEAETFDASNKPVIAVKAARVSEFQGN------------------------------- 649
WG +AE FDASN +IA+K ARV EF G
Sbjct: 313 WGTQAEEFDASNNTIIAIKEARVDEFNGKHLSLIMSSIIEKDPNIPEAHRLRGWYTAVGH 372
Query: 650 -------------------LLLMREIQDQQLGMG-DKADYCSVRGIIQVFRGSNTTYKAC 689
L +E D +LG + D ++ I+ R N+ Y+AC
Sbjct: 373 SETAKSLSRVGGSTDFNGPLYTFQEATDARLGKKMNLPDSFTIVATIKQIRTENSPYRAC 432
Query: 690 PSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILG 749
P + C KK+IDQNNG +RCEKCNK++ FTYRL+ + + D T S W+T F EAE ILG
Sbjct: 433 PLESCKKKLIDQNNGTFRCEKCNKKYPNFTYRLLANMELADATGSRWITAFNEEAEKILG 492
Query: 750 VTAQEVGESTEDHP-----ALKKALFTQYIFRLRAKLEHY 784
++AQE+GE E+ + +A F ++F L+A+ E +
Sbjct: 493 MSAQELGELKENDKDAYLQKIGEATFKTFMFNLKARSEVF 532
Score = 255 bits (652), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 200/326 (61%), Gaps = 10/326 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+++S+ NDYEM T T ++PC D ++P+++Y F P+ + ++ +DVLGV
Sbjct: 217 ANKQYNSMKNDYEMLMTSDTEIVPC-RDSNNDIPTLQYNFSPISQVEHKEKNDLLDVLGV 275
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
++ T +T ++ +KR+I++VD S VT+TLWG +AE FDASN +IA+K AR
Sbjct: 276 VTTVGDVQHFTARTGRE-LIKRNISIVDDSDTMVTVTLWGTQAEEFDASNNTIIAIKEAR 334
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
V EF G K LSL MSS++ +P+IPE H+L+GW++ ++ R GG G L
Sbjct: 335 VDEFNG-KHLSLIMSSIIEKDPNIPEAHRLRGWYTAVGHSETAKSLSRVGG-STDFNGPL 392
Query: 186 LLMREIQDQQLGMG-DKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+E D +LG + D ++ I+ R N+ Y+ACP + C KK+IDQNNG +RCE
Sbjct: 393 YTFQEATDARLGKKMNLPDSFTIVATIKQIRTENSPYRACPLESCKKKLIDQNNGTFRCE 452
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----A 299
KCNK++ FTYRL+ + + D T S W+T F EAE ILG++AQE+GE E+
Sbjct: 453 KCNKKYPNFTYRLLANMELADATGSRWITAFNEEAEKILGMSAQELGELKENDKDAYLQK 512
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ +A F ++F L+A+ E + T +I
Sbjct: 513 IGEATFKTFMFNLKARSEVFQDTMRI 538
>gi|343887032|gb|AEM65192.1| replication protein A 70kDa DNA-binding subunit [Kryptolebias
marmoratus]
Length = 610
Score = 344 bits (883), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 202/542 (37%), Positives = 300/542 (55%), Gaps = 90/542 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG + S ML+TQLN + + L+ I +K ++ + + G R V+IILE+++
Sbjct: 44 MSDGRDTLSSFMLSTQLNFMAEENILAPNCICNLKGHVTNILKDG----RRVVIILEIDV 99
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAAT-----------------NTNG-SNGVH 426
+K E+ +IG+P P + N QQ PA N N S G +
Sbjct: 100 LKSANEVAGRIGDPTPY-FDGQNKGLQQAPAPAPAPAPAPVPETRPLQQQNRNEVSRGYN 158
Query: 427 NNVAIPRQASAPVV-----QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFS 481
++ + PV + PI SL+PYQ+KWT++ARVTNK+ IR W+N+RG G+LFS
Sbjct: 159 RDLVKKAPPAMPVTPGGGSKVVPIASLNPYQSKWTVRARVTNKSSIRTWSNSRGDGRLFS 218
Query: 482 IDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHS 541
++++DESGEIR T FN E ++F+ +IE KVYY++ +LK ANK+++S+ NDYEM+
Sbjct: 219 MEIVDESGEIRVTAFNQEVDKFYSLIEVGKVYYVTKGSLKIANKQYTSVKNDYEMTLNGE 278
Query: 542 TTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTY 601
+T+IPC ++ ++P V+ F+P+ + + D +DV+GVC E++ +T K+N++
Sbjct: 279 STIIPCEDN--CDVPMVQCDFIPIADLEKREKDAIVDVIGVCKSVDEVTRLTTKSNREV- 335
Query: 602 MKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEF--------------- 646
KR + L+D S V++ LWG+EAE FD S +P++A+K A++S+F
Sbjct: 336 SKRTLNLMDMSGKMVSVILWGEEAEKFDGSEQPIVAIKGAKLSDFGGRSISASFSSTLMI 395
Query: 647 ----------------QGNLLL---------------------MREIQDQQLGMGDKADY 669
+G+ ++ + E++ + LG GD+ADY
Sbjct: 396 NPDIPEAYKIRGWFDNEGHTVVGQSLTERRGTGIIGGIHIWKTLSEVKAEHLGHGDEADY 455
Query: 670 CSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIG 729
S I R N Y+ACPSQDCNKKVI Q NGM+RCEKC+KEF F YRLIL I
Sbjct: 456 FSCTATIVYLRKENCLYQACPSQDCNKKVIGQQNGMFRCEKCDKEFPNFKYRLILSANIA 515
Query: 730 DWTNSVWVTLFQNEAESILGVTAQEVG------ESTEDHPALKKALFTQYIFRLRAKLEH 783
D+ ++ WVT FQ AE+ILG A +G ES D +KA F IF R KLE
Sbjct: 516 DYGDNQWVTCFQESAEAILGQNAAYLGQLKHSNESAFDE-VFQKANFNTLIFHNRVKLET 574
Query: 784 YN 785
YN
Sbjct: 575 YN 576
Score = 269 bits (688), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 141/327 (43%), Positives = 205/327 (62%), Gaps = 12/327 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+++S+ NDYEM+ +T+IPC ++ ++P V+ F+P+ + + D +DV+GV
Sbjct: 260 ANKQYTSVKNDYEMTLNGESTIIPCEDN--CDVPMVQCDFIPIADLEKREKDAIVDVIGV 317
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C E++ +T K+N++ KR + L+D S V++ LWG+EAE FD S +P++A+K A+
Sbjct: 318 CKSVDEVTRLTTKSNREV-SKRTLNLMDMSGKMVSVILWGEEAEKFDGSEQPIVAIKGAK 376
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRF-EPVSQRTGGMGGGAAGN 184
+S+F GG+++S S SS L +NPDIPE +K++GWF + +T + +++R G G
Sbjct: 377 LSDF-GGRSISASFSSTLMINPDIPEAYKIRGWFDNEGHTVVGQSLTERRGTGIIGGIHI 435
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ E++ + LG GD+ADY S I R N Y+ACPSQDCNKKVI Q NGM+RCE
Sbjct: 436 WKTLSEVKAEHLGHGDEADYFSCTATIVYLRKENCLYQACPSQDCNKKVIGQQNGMFRCE 495
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG------ESTEDHP 298
KC+KEF F YRLIL I D+ ++ WVT FQ AE+ILG A +G ES D
Sbjct: 496 KCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKHSNESAFDE- 554
Query: 299 ALKKALFTQYIFRLRAKLEHYNGTKKI 325
+KA F IF R KLE YN +I
Sbjct: 555 VFQKANFNTLIFHNRVKLETYNDESRI 581
>gi|349605285|gb|AEQ00575.1| Replication protein A 70 kDa DNA-binding subunit-like protein,
partial [Equus caballus]
Length = 481
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 183/446 (41%), Positives = 256/446 (57%), Gaps = 63/446 (14%)
Query: 398 PQPLNTNTDNSST-QQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWT 456
PQP N ++ ST + A+ T G G + V A VV PI SL+PYQ+KWT
Sbjct: 7 PQPQNGSSGMGSTVSKAYGASKTFGKAGGASLVNSSGGTQAKVV---PIASLTPYQSKWT 63
Query: 457 IKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYIS 516
I ARVTNK+ IR W+N+RG GKLFSI+L+DESGEIRAT FN++ ++F +++ +KVYY S
Sbjct: 64 ICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIRATAFNEQADKFFPLLDVNKVYYFS 123
Query: 517 NCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN 576
TLK ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F + + D
Sbjct: 124 KGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFTGIGELENKPKDSL 181
Query: 577 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVI 636
+D++G+C + + +T K+N + KR+I L+D S VT TLWG++A+ FD S +PV+
Sbjct: 182 VDIIGICKSYEDATKITVKSNNREVSKRNIYLMDTSGKVVTTTLWGEDADRFDGSRQPVM 241
Query: 637 AVKAARVSEFQG------------------------------------------------ 648
A+K ARVS+F G
Sbjct: 242 AIKGARVSDFGGRSLSVLSSSTVIMNPDISEAYKLRGWFDSEGQALDGVSISDLKGGGTG 301
Query: 649 ----NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNG 704
N + E++ + LG GDKADY S + R N Y+ACPSQDCNKKVIDQ NG
Sbjct: 302 GSNTNWKTLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQACPSQDCNKKVIDQQNG 361
Query: 705 MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-- 762
+YRCEKC+ EF +F YR+IL V I D+ + WVT FQ AE+ILG +GE E +
Sbjct: 362 LYRCEKCDSEFPSFKYRMILSVNIADFQENQWVTCFQESAEAILGQNTAYLGELKEKNEQ 421
Query: 763 ---PALKKALFTQYIFRLRAKLEHYN 785
+ A F + FR+R KLE +N
Sbjct: 422 AFEEVFQNANFRSFTFRIRVKLETFN 447
Score = 263 bits (672), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 140/326 (42%), Positives = 205/326 (62%), Gaps = 9/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F + + D +D++G+
Sbjct: 130 ANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFTGIGELENKPKDSLVDIIGI 187
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T K+N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 188 CKSYEDATKITVKSNNREVSKRNIYLMDTSGKVVTTTLWGEDADRFDGSRQPVMAIKGAR 247
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGMGGGAAGN 184
VS+F GG++LS+ SS + +NPDI E +KL+GWF ++ +S GG GG+ N
Sbjct: 248 VSDF-GGRSLSVLSSSTVIMNPDISEAYKLRGWFDSEGQALDGVSISDLKGGGTGGSNTN 306
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ E++ + LG GDKADY S + R N Y+ACPSQDCNKKVIDQ NG+YRCE
Sbjct: 307 WKTLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQACPSQDCNKKVIDQQNGLYRCE 366
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PA 299
KC+ EF +F YR+IL V I D+ + WVT FQ AE+ILG +GE E +
Sbjct: 367 KCDSEFPSFKYRMILSVNIADFQENQWVTCFQESAEAILGQNTAYLGELKEKNEQAFEEV 426
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F + FR+R KLE +N +I
Sbjct: 427 FQNANFRSFTFRIRVKLETFNDESRI 452
>gi|410915298|ref|XP_003971124.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Takifugu rubripes]
Length = 570
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 187/518 (36%), Positives = 293/518 (56%), Gaps = 80/518 (15%)
Query: 324 KIPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELN 383
++ DG ++ S +LATQLN + + L + +K+ S +S G R V+IIL++
Sbjct: 44 RMSDGRHLWSAFLLATQLNHLSEENLLVPHCVCLLKKTTTSTLSDG----RRVVIILDME 99
Query: 384 IIKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTH 443
I++ + G IGNP T ++S ++ +P +++ N +
Sbjct: 100 ILQSAEKSGGLIGNP---TTYKESSPSKFSPTKASSSSPGASSNMI-------------- 142
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI L+PYQ+KWTI+ARV NK+ IR WNN+RG GKLFS +++DESGE++ T FN E ++F
Sbjct: 143 PIAQLNPYQSKWTIRARVMNKSSIRTWNNSRGEGKLFSFEIVDESGEMKITAFNKEVDKF 202
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
++E+ KVYYIS TLK ANK+++++ +DYEM+ ++++PC + + ++P+V+ FV
Sbjct: 203 FSLVEQGKVYYISKATLKVANKQYNTLKHDYEMTLHAHSSIMPCADGQ--DIPAVQCDFV 260
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
P+ + D IDV+GVC A ++S +T K++++ KR + L+D + V TLWG+
Sbjct: 261 PIAELENRDKDAIIDVIGVCKTAEDVSRITTKSSREV-SKRTLHLIDTTGKMVAATLWGE 319
Query: 624 EAETFDASNKPVIAVKAARVSEFQG----------------------------------- 648
EAE F+ S +PV+A+K AR+S+F G
Sbjct: 320 EAEKFEGSEQPVVAIKGARLSDFGGRSLSALFSSTVMVNPDIPEAFRLRAWYDQGGYALA 379
Query: 649 ----------------NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQ 692
N + +++++ LG G+KADY S + R Y+ACPS
Sbjct: 380 SQSLSETKSGGSGMRMNWKTLSDVKNENLGHGEKADYFSCVATLLYSRKDTCLYRACPSV 439
Query: 693 DCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA 752
DCNKKV+DQ+NG +RCEKCN+EF F YRL+L + D+ ++ WVT FQ AE++LG +A
Sbjct: 440 DCNKKVLDQHNGWFRCEKCNREFPNFKYRLLLSANLADFGDNQWVTCFQETAEALLGHSA 499
Query: 753 QEVGESTEDHPA-----LKKALFTQYIFRLRAKLEHYN 785
+ +G+ + A +KA FT +IF+ R KLE YN
Sbjct: 500 ETLGQLRDTDEAAFDAVFQKANFTTHIFKNRVKLETYN 537
Score = 255 bits (651), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 127/325 (39%), Positives = 201/325 (61%), Gaps = 9/325 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+++++ +DYEM+ ++++PC + + ++P+V+ FVP+ + D IDV+GV
Sbjct: 222 ANKQYNTLKHDYEMTLHAHSSIMPCADGQ--DIPAVQCDFVPIAELENRDKDAIIDVIGV 279
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C A ++S +T K++++ KR + L+D + V TLWG+EAE F+ S +PV+A+K AR
Sbjct: 280 CKTAEDVSRITTKSSREV-SKRTLHLIDTTGKMVAATLWGEEAEKFEGSEQPVVAIKGAR 338
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
+S+F GG++LS SS + +NPDIPE +L+ W+ T G G N
Sbjct: 339 LSDF-GGRSLSALFSSTVMVNPDIPEAFRLRAWYDQGGYALASQSLSETKSGGSGMRMNW 397
Query: 186 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 245
+ +++++ LG G+KADY S + R Y+ACPS DCNKKV+DQ+NG +RCEK
Sbjct: 398 KTLSDVKNENLGHGEKADYFSCVATLLYSRKDTCLYRACPSVDCNKKVLDQHNGWFRCEK 457
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----L 300
CN+EF F YRL+L + D+ ++ WVT FQ AE++LG +A+ +G+ + A
Sbjct: 458 CNREFPNFKYRLLLSANLADFGDNQWVTCFQETAEALLGHSAETLGQLRDTDEAAFDAVF 517
Query: 301 KKALFTQYIFRLRAKLEHYNGTKKI 325
+KA FT +IF+ R KLE YN ++
Sbjct: 518 QKANFTTHIFKNRVKLETYNDESRV 542
>gi|189241203|ref|XP_970077.2| PREDICTED: similar to replication factor a 1, rfa1 [Tribolium
castaneum]
Length = 585
Score = 339 bits (869), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 191/515 (37%), Positives = 283/515 (54%), Gaps = 69/515 (13%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSE-FTIVQIKRYIVSGVSSGSATNRSVLIILELN 383
I DG++ + A+ ND L + FTI+++KRY+ + + + + + V+ ILEL
Sbjct: 49 ISDGLHKVNIAVFTVPKNDQTLPHVLEQVFTIIKLKRYLSNVIKNKNNIDARVIAILELE 108
Query: 384 IIKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTH 443
++ G +G IGNP L + + T T S+ + N I S+ +
Sbjct: 109 VVARGEFVGQIIGNPVSL-----------SDSETLTQSSDVIKRNECINGSFSSKTIS-- 155
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI SL+P+ N W I+ARV NKT +R W+NA+G GKLFSIDL+D+ GEIR T F D ++F
Sbjct: 156 PIASLNPFHNNWIIRARVVNKTNVRNWSNAKGEGKLFSIDLVDKGGEIRCTAFRDLVDKF 215
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSVKYCF 562
D +E DKVYYIS C L+P N++F S+ + +EM FT T + P +D E+ +P + Y F
Sbjct: 216 FDRLEVDKVYYISKCQLQPINRQFCSLKHQFEMYFTPETIIEPSYDDNEI--IPQITYNF 273
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
+ +A + +DV+GVC +EL S K+ + KR + LVDQ++ ++++ LWG
Sbjct: 274 TTIDKVAVMEAGTIVDVIGVCKTISELQSFVAKSTNREMQKRQLVLVDQTKTAISLNLWG 333
Query: 623 KEAETFDASNKPVIAVKAARVSEFQG--NLLLM-----------REI------------- 656
+AE+F + PVI VK A++ EF+G ++ LM RE
Sbjct: 334 SQAESFAVTGNPVILVKNAKIYEFRGAKSITLMGTSLLKIDPEIRETHILRRWYHSEGNQ 393
Query: 657 ---------------------QDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCN 695
+ +Q + +K Y G I + R YK+CP+ DC
Sbjct: 394 VEITNVSHRNGYGSTPWLTFKEARQQTISEKPLYYQTFGTILLVRLDRAVYKSCPNADCQ 453
Query: 696 KKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 755
KKV+D NGMYRCEKCN+EF F YRL++ + + D ++S WVT+F +EAE ILG TAQE+
Sbjct: 454 KKVLDLENGMYRCEKCNREFPNFKYRLLVSMNVADSSSSQWVTVFSSEAEKILGKTAQEI 513
Query: 756 GESTEDHP-----ALKKALFTQYIFRLRAKLEHYN 785
GE E P ++A F Q+IF+ RAK+E YN
Sbjct: 514 GELMETDPDTVANMFEEAQFKQFIFKCRAKIETYN 548
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 127/328 (38%), Positives = 196/328 (59%), Gaps = 15/328 (4%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSVKYCFVPLKTIAEISPDENIDVL 63
P N++F S+ + +EM FT T + P +D E+ +P + Y F + +A + +DV+
Sbjct: 234 PINRQFCSLKHQFEMYFTPETIIEPSYDDNEI--IPQITYNFTTIDKVAVMEAGTIVDVI 291
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKA 123
GVC +EL S K+ + KR + LVDQ++ ++++ LWG +AE+F + PVI VK
Sbjct: 292 GVCKTISELQSFVAKSTNREMQKRQLVLVDQTKTAISLNLWGSQAESFAVTGNPVILVKN 351
Query: 124 ARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTN-TRFEPVSQRTGGMGGGAA 182
A++ EF+G K+++L +S+L ++P+I E H L+ W+ ++ N VS R G +
Sbjct: 352 AKIYEFRGAKSITLMGTSLLKIDPEIRETHILRRWYHSEGNQVEITNVSHR----NGYGS 407
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
L +E + Q + +K Y G I + R YK+CP+ DC KKV+D NGMYR
Sbjct: 408 TPWLTFKEARQQTIS--EKPLYYQTFGTILLVRLDRAVYKSCPNADCQKKVLDLENGMYR 465
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP---- 298
CEKCN+EF F YRL++ + + D ++S WVT+F +EAE ILG TAQE+GE E P
Sbjct: 466 CEKCNREFPNFKYRLLVSMNVADSSSSQWVTVFSSEAEKILGKTAQEIGELMETDPDTVA 525
Query: 299 -ALKKALFTQYIFRLRAKLEHYNGTKKI 325
++A F Q+IF+ RAK+E YN +K+
Sbjct: 526 NMFEEAQFKQFIFKCRAKIETYNDEQKM 553
>gi|355767985|gb|EHH62675.1| Replication protein A 70 kDa DNA-binding subunit, partial [Macaca
fascicularis]
Length = 499
Score = 336 bits (862), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 169/399 (42%), Positives = 238/399 (59%), Gaps = 59/399 (14%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKLFS++L+DESGEIRAT FN++ ++F
Sbjct: 69 PIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKF 128
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+IE +KVYY S TLK ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F
Sbjct: 129 FPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDR--HLPTVQFDFT 186
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
+ + S D +D++G+C + + +T ++N + KR+I L+D S VT TLWG+
Sbjct: 187 GIDDLESKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGE 246
Query: 624 EAETFDASNKPVIAVKAARVSEFQG----------------------------------- 648
+A+ FD S +PV+A+K ARVS+F G
Sbjct: 247 DADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALD 306
Query: 649 -----------------NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS 691
N + E++ + LG GDK DY S + R N Y+ACP+
Sbjct: 307 GVSISDLKSGGVGGGNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT 366
Query: 692 QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVT 751
QDCNKKVIDQ NG+YRCEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG
Sbjct: 367 QDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQN 426
Query: 752 AQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYN 785
A +GE + + + A F +IFR+R K+E YN
Sbjct: 427 AAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETYN 465
Score = 286 bits (731), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 142/328 (43%), Positives = 209/328 (63%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F + + S D +D++G+
Sbjct: 148 ANKQFTAVKNDYEMTFNNETSVMPCEDDR--HLPTVQFDFTGIDDLESKSKDSLVDIIGI 205
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T ++N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 206 CKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGAR 265
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + NPDIPE +KL+GWF + + VS ++GG+GGG
Sbjct: 266 VSDF-GGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQA-LDGVSISDLKSGGVGGGNT 323
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 324 -NWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 382
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG A +GE + +
Sbjct: 383 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFE 442
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F +IFR+R K+E YN +I
Sbjct: 443 EVFQNANFRSFIFRVRVKVETYNDESRI 470
>gi|348540235|ref|XP_003457593.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Oreochromis niloticus]
Length = 665
Score = 336 bits (862), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 167/398 (41%), Positives = 243/398 (61%), Gaps = 59/398 (14%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI SL+PYQ+KWTI+ARVTNK+ IR W+N+RG GKLFS +++DESGEIR T FN E ++F
Sbjct: 238 PIASLNPYQSKWTIRARVTNKSSIRTWSNSRGEGKLFSFEIVDESGEIRITAFNKEVDKF 297
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
++E+ KVYYIS TLKPANK+++++ NDYEM+ ++++PC++++ ++P+V FV
Sbjct: 298 FSLVEQGKVYYISKATLKPANKQYTTLKNDYEMTLHAHSSIVPCDDNQ--SIPTVHCDFV 355
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
P+ + D IDV+G+C A ++S +T K N + KR ++++DQ+ VT+TLWG+
Sbjct: 356 PIAELENRDKDAIIDVIGICKSAEDVSRITTK-NSREVSKRALSIIDQTGKVVTVTLWGE 414
Query: 624 EAETFDASNKPVIAVKAARVSEFQGNLL-------------------------------- 651
EAE FD S +PV+A+K AR+S+F G L
Sbjct: 415 EAENFDGSTQPVVAIKGARLSDFGGRSLSALFSSTVMVNPDIPQAFRLRAWYDREGFAIN 474
Query: 652 -------------------LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQ 692
+ +I+++ +G G+KA Y S + R N Y+ACPS
Sbjct: 475 SQSLTETRSAGTGLNVNWKTLSDIKNEDMGHGEKAQYFSCVATVLYIRKENCLYQACPSA 534
Query: 693 DCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA 752
DCNKKVIDQ NG+YRCEKCN+EF F YRL+L + D+ ++ WVT FQ AE++LG +A
Sbjct: 535 DCNKKVIDQQNGLYRCEKCNREFPNFKYRLLLSANLADFGDNQWVTCFQETAEALLGHSA 594
Query: 753 QEVGESTEDHPA-----LKKALFTQYIFRLRAKLEHYN 785
+ +G + A +KA FT +IF+ R KLE YN
Sbjct: 595 ETLGHLRDTDEAAFDEVFQKANFTTHIFKNRVKLETYN 632
Score = 270 bits (689), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 205/326 (62%), Gaps = 9/326 (2%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK+++++ NDYEM+ ++++PC++++ ++P+V FVP+ + D IDV+G
Sbjct: 316 PANKQYTTLKNDYEMTLHAHSSIVPCDDNQ--SIPTVHCDFVPIAELENRDKDAIIDVIG 373
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+C A ++S +T K N + KR ++++DQ+ VT+TLWG+EAE FD S +PV+A+K A
Sbjct: 374 ICKSAEDVSRITTK-NSREVSKRALSIIDQTGKVVTVTLWGEEAENFDGSTQPVVAIKGA 432
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGN 184
R+S+F GG++LS SS + +NPDIP+ +L+ W+ + T G G N
Sbjct: 433 RLSDF-GGRSLSALFSSTVMVNPDIPQAFRLRAWYDREGFAINSQSLTETRSAGTGLNVN 491
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ +I+++ +G G+KA Y S + R N Y+ACPS DCNKKVIDQ NG+YRCE
Sbjct: 492 WKTLSDIKNEDMGHGEKAQYFSCVATVLYIRKENCLYQACPSADCNKKVIDQQNGLYRCE 551
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA----- 299
KCN+EF F YRL+L + D+ ++ WVT FQ AE++LG +A+ +G + A
Sbjct: 552 KCNREFPNFKYRLLLSANLADFGDNQWVTCFQETAEALLGHSAETLGHLRDTDEAAFDEV 611
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+KA FT +IF+ R KLE YN ++
Sbjct: 612 FQKANFTTHIFKNRVKLETYNDESRV 637
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
DG + + +LATQLN + + L + +K+ + + ++ G R V+++++++I+K
Sbjct: 47 DGQHSLTSCLLATQLNYLSDENLLVPNCVCLLKKTVNNTLADG----RRVVVVMDMDILK 102
Query: 387 PGTEIGFKIGNPQPLNTNTDNSSTQQTPAAT 417
E G KIGNP P NT+ SS Q+ ++T
Sbjct: 103 SAEEAGGKIGNPTPYNTDGKMSSPQKVSSST 133
>gi|354504939|ref|XP_003514530.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit,
partial [Cricetulus griseus]
Length = 498
Score = 335 bits (858), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 170/399 (42%), Positives = 236/399 (59%), Gaps = 59/399 (14%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKLFSI+L+DESGEIRAT FN++ ++F
Sbjct: 70 PIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIRATAFNEQVDKF 129
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+IE +KVYY S TLK ANK+FS++ NDYEM+F + T+V+PC + ++P+V++ F
Sbjct: 130 FPLIEVNKVYYFSKGTLKIANKQFSAVKNDYEMTFNNETSVLPCEDGH--HLPTVQFDFT 187
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
+ + S D +D++G+C + + +T K++ + KR+I L+D S VT TLWG+
Sbjct: 188 GISDLESKSKDSLVDIIGICKSYEDSTKITVKSSNREVAKRNIYLMDMSGKVVTATLWGE 247
Query: 624 EAETFDASNKPVIAVKAARVSEFQG----------------------------------- 648
+A+ FD S +PV+A+K ARVS+F G
Sbjct: 248 DADKFDGSRQPVMAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKLRGWFDSEGQALD 307
Query: 649 -----------------NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS 691
N + E + + LG GDKADY S + R N Y+ACP+
Sbjct: 308 GVSISDLRSGGAGGNNTNWKTLYEAKSENLGQGDKADYFSTVATVVFLRKENCMYQACPT 367
Query: 692 QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVT 751
QDCNKKVIDQ NG+YRCEKC++EF F YR+IL V + D+ + WVT FQ AE+ILG
Sbjct: 368 QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSVNVADFQENQWVTCFQESAEAILGQN 427
Query: 752 AQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYN 785
+GE E + + A F + FR+R KLE YN
Sbjct: 428 TAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYN 466
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 142/328 (43%), Positives = 207/328 (63%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+FS++ NDYEM+F + T+V+PC + ++P+V++ F + + S D +D++G+
Sbjct: 149 ANKQFSAVKNDYEMTFNNETSVLPCEDGH--HLPTVQFDFTGISDLESKSKDSLVDIIGI 206
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T K++ + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 207 CKSYEDSTKITVKSSNREVAKRNIYLMDMSGKVVTATLWGEDADKFDGSRQPVMAIKGAR 266
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + +NPDIPE +KL+GWF ++ + VS R+GG GG
Sbjct: 267 VSDF-GGRSLSVLSSSTIIVNPDIPEAYKLRGWFDSEGQA-LDGVSISDLRSGGAGGNNT 324
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E + + LG GDKADY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 325 -NWKTLYEAKSENLGQGDKADYFSTVATVVFLRKENCMYQACPTQDCNKKVIDQQNGLYR 383
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC++EF F YR+IL V + D+ + WVT FQ AE+ILG +GE E +
Sbjct: 384 CEKCDREFPNFKYRMILSVNVADFQENQWVTCFQESAEAILGQNTAYLGELKEKNEQAFE 443
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F + FR+R KLE YN +I
Sbjct: 444 EVFQNANFRSFTFRIRVKLETYNDESRI 471
>gi|270013263|gb|EFA09711.1| hypothetical protein TcasGA2_TC011844 [Tribolium castaneum]
Length = 593
Score = 331 bits (849), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 191/523 (36%), Positives = 283/523 (54%), Gaps = 77/523 (14%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSE-FTIVQIKRYIVSGVSSGSATNRSVLIILELN 383
I DG++ + A+ ND L + FTI+++KRY+ + + + + + V+ ILEL
Sbjct: 49 ISDGLHKVNIAVFTVPKNDQTLPHVLEQVFTIIKLKRYLSNVIKNKNNIDARVIAILELE 108
Query: 384 IIKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTH 443
++ G +G IGNP L + + T T S+ + N I S+ +
Sbjct: 109 VVARGEFVGQIIGNPVSL-----------SDSETLTQSSDVIKRNECINGSFSSKTIS-- 155
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI SL+P+ N W I+ARV NKT +R W+NA+G GKLFSIDL+D+ GEIR T F D ++F
Sbjct: 156 PIASLNPFHNNWIIRARVVNKTNVRNWSNAKGEGKLFSIDLVDKGGEIRCTAFRDLVDKF 215
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSVKYCF 562
D +E DKVYYIS C L+P N++F S+ + +EM FT T + P +D E+ +P + Y F
Sbjct: 216 FDRLEVDKVYYISKCQLQPINRQFCSLKHQFEMYFTPETIIEPSYDDNEI--IPQITYNF 273
Query: 563 VPLKTIAEISPD--------ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA 614
+ +A + +DV+GVC +EL S K+ + KR + LVDQ++
Sbjct: 274 TTIDKVAVMEAGTIVGNWRMSILDVIGVCKTISELQSFVAKSTNREMQKRQLVLVDQTKT 333
Query: 615 SVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG--NLLLM-----------REI----- 656
++++ LWG +AE+F + PVI VK A++ EF+G ++ LM RE
Sbjct: 334 AISLNLWGSQAESFAVTGNPVILVKNAKIYEFRGAKSITLMGTSLLKIDPEIRETHILRR 393
Query: 657 -----------------------------QDQQLGMGDKADYCSVRGIIQVFRGSNTTYK 687
+ +Q + +K Y G I + R YK
Sbjct: 394 WYHSEGNQVEITNVSHRNGYGSTPWLTFKEARQQTISEKPLYYQTFGTILLVRLDRAVYK 453
Query: 688 ACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESI 747
+CP+ DC KKV+D NGMYRCEKCN+EF F YRL++ + + D ++S WVT+F +EAE I
Sbjct: 454 SCPNADCQKKVLDLENGMYRCEKCNREFPNFKYRLLVSMNVADSSSSQWVTVFSSEAEKI 513
Query: 748 LGVTAQEVGESTEDHP-----ALKKALFTQYIFRLRAKLEHYN 785
LG TAQE+GE E P ++A F Q+IF+ RAK+E YN
Sbjct: 514 LGKTAQEIGELMETDPDTVANMFEEAQFKQFIFKCRAKIETYN 556
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/336 (37%), Positives = 196/336 (58%), Gaps = 23/336 (6%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSVKYCFVPLKTIAEISPD------ 57
P N++F S+ + +EM FT T + P +D E+ +P + Y F + +A +
Sbjct: 234 PINRQFCSLKHQFEMYFTPETIIEPSYDDNEI--IPQITYNFTTIDKVAVMEAGTIVGNW 291
Query: 58 --ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN 115
+DV+GVC +EL S K+ + KR + LVDQ++ ++++ LWG +AE+F +
Sbjct: 292 RMSILDVIGVCKTISELQSFVAKSTNREMQKRQLVLVDQTKTAISLNLWGSQAESFAVTG 351
Query: 116 KPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTN-TRFEPVSQRT 174
PVI VK A++ EF+G K+++L +S+L ++P+I E H L+ W+ ++ N VS R
Sbjct: 352 NPVILVKNAKIYEFRGAKSITLMGTSLLKIDPEIRETHILRRWYHSEGNQVEITNVSHR- 410
Query: 175 GGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVI 234
G + L +E + Q + +K Y G I + R YK+CP+ DC KKV+
Sbjct: 411 ---NGYGSTPWLTFKEARQQTIS--EKPLYYQTFGTILLVRLDRAVYKSCPNADCQKKVL 465
Query: 235 DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGEST 294
D NGMYRCEKCN+EF F YRL++ + + D ++S WVT+F +EAE ILG TAQE+GE
Sbjct: 466 DLENGMYRCEKCNREFPNFKYRLLVSMNVADSSSSQWVTVFSSEAEKILGKTAQEIGELM 525
Query: 295 EDHP-----ALKKALFTQYIFRLRAKLEHYNGTKKI 325
E P ++A F Q+IF+ RAK+E YN +K+
Sbjct: 526 ETDPDTVANMFEEAQFKQFIFKCRAKIETYNDEQKM 561
>gi|291221744|ref|XP_002730881.1| PREDICTED: replication protein A1-like [Saccoglossus kowalevskii]
Length = 585
Score = 327 bits (839), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 195/513 (38%), Positives = 287/513 (55%), Gaps = 60/513 (11%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG +S AMLATQLN +TDG LS +++Q+ +YI + + A N+ V+IILE+N+
Sbjct: 47 LSDGQRSHS-AMLATQLNKKVTDGELSVRSVIQLNKYICNTI----ADNKRVIIILEVNL 101
Query: 385 IKPGTEIGFKIGNPQPL-------NTNTDNSSTQQTPAA-------TNTNGSNGVHNNVA 430
I ++ KIGNP P+ N QT T T N +
Sbjct: 102 IAGQNQVQDKIGNPVPIGQPAPPAQQNGQAPHNAQTGRGGLMSSRPTTTMPYNAANEMPK 161
Query: 431 IPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE 490
+P S + + PI SL+PYQN+WTI+ARVTNK IR WNN+RG G LFS+DL+D+S E
Sbjct: 162 MPTTPSGGMSKVFPIASLTPYQNRWTIRARVTNKGNIRHWNNSRGEGCLFSMDLIDDSAE 221
Query: 491 IRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED 550
IRAT FND+C ++ DM++ +VY IS TLK ANK+++SI NDYEMSFT T V CN+
Sbjct: 222 IRATAFNDQCKKYFDMVQVGQVYLISRGTLKTANKQYTSIKNDYEMSFTSETVVELCNDA 281
Query: 551 EVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVD 610
E ++P+V++ F + + +I D +DV+GVC +++S++ ++ + KR++ LVD
Sbjct: 282 EASDVPTVQFDFKQIGQLEDIPKDTMVDVIGVCKSFSDVSTIVTRSTNRELSKRELHLVD 341
Query: 611 QSQASVTMTLWGKEAETF------DASNKP----------VIAVKAARVSEF-------- 646
S+ VT+TLWG + F SN P V+ V F
Sbjct: 342 DSEKVVTLTLWGTDLTRFWIVRTRTFSNCPASWATFHDVQVVCVIYRTREGFVYLRPTHT 401
Query: 647 ------QGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFR-GSNTTYKACPSQDCNKKVI 699
+GN + I +Q+ G G ++ + I+V + G + KACPS +CNKKV+
Sbjct: 402 IHWYDGEGNCKTITSISEQRTGGGGGTNW---KNFIEVKKQGLGSGEKACPSAECNKKVV 458
Query: 700 DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGV-TAQEVGE- 757
+ ++G YRCEKC KE+ F YR++L + D+ + WVT FQ++A+ ILG TA+ +G
Sbjct: 459 ENSDGSYRCEKCAKEYPDFKYRMLLVINTVDFGDGQWVTCFQDQAQVILGGNTAEHIGSL 518
Query: 758 -----STEDHPALKKALFTQYIFRLRAKLEHYN 785
+E ++A F Y R+R K E YN
Sbjct: 519 KDSNNESEFEAVFQEANFKSYNLRMRIKQETYN 551
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 109/332 (32%), Positives = 174/332 (52%), Gaps = 41/332 (12%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+++SI NDYEMSFT T V CN+ E ++P+V++ F + + +I D +DV+GV
Sbjct: 254 ANKQYTSIKNDYEMSFTSETVVELCNDAEASDVPTVQFDFKQIGQLEDIPKDTMVDVIGV 313
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C +++S++ ++ + KR++ LVD S+ VT+TLWG + F + A
Sbjct: 314 CKSFSDVSTIVTRSTNRELSKRELHLVDDSEKVVTLTLWGTDLTRFWIVRTRTFSNCPAS 373
Query: 126 VSEFQGGKTLSL---SMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVS-QRTGGMGGG 180
+ F + + + + + L P H + W+ + N + +S QRTGG GG
Sbjct: 374 WATFHDVQVVCVIYRTREGFVYLRP----THTIH-WYDGEGNCKTITSISEQRTGGGGGT 428
Query: 181 AAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGM 240
N + E++ Q LG G+ KACPS +CNKKV++ ++G
Sbjct: 429 NWKNFI---EVKKQGLGSGE---------------------KACPSAECNKKVVENSDGS 464
Query: 241 YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGV-TAQEVGE------S 293
YRCEKC KE+ F YR++L + D+ + WVT FQ++A+ ILG TA+ +G
Sbjct: 465 YRCEKCAKEYPDFKYRMLLVINTVDFGDGQWVTCFQDQAQVILGGNTAEHIGSLKDSNNE 524
Query: 294 TEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
+E ++A F Y R+R K E YN ++
Sbjct: 525 SEFEAVFQEANFKSYNLRMRIKQETYNDETRL 556
>gi|432895940|ref|XP_004076236.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Oryzias latipes]
Length = 655
Score = 322 bits (824), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 171/449 (38%), Positives = 259/449 (57%), Gaps = 64/449 (14%)
Query: 397 NPQPLNTNTDNSSTQQTPAATNTNG----SNGVHNNVAIPRQASAPVVQTHPIVSLSPYQ 452
+P + D +S + A +TN S N + +S+P+ + PI +L+PYQ
Sbjct: 178 SPMKFSPAKDTNSPMKFSPAKDTNSPMKSSPAKDTNSPMKASSSSPM-KVFPISTLNPYQ 236
Query: 453 NKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKV 512
+KWTI+ARVTNK+ +R+W+N+RG GKLFS +++DESGEI+ T FN+E ++F ++E+ KV
Sbjct: 237 SKWTIRARVTNKSNVRQWSNSRGEGKLFSFEVVDESGEIKITAFNNEVDKFFSLLEQGKV 296
Query: 513 YYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEIS 572
YYIS TLK ANK++S++ NDYEM+ ++++PC +++ ++P++ FV ++ +
Sbjct: 297 YYISKATLKVANKQYSTLKNDYEMTLHAHSSIVPCEDNQ--SIPTMNCNFVQIEELENRD 354
Query: 573 PDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN 632
D IDV+G+C A ++S +T K N + KR + L+D S VT TLWG+EAE FD S
Sbjct: 355 KDAIIDVIGICKKAEDVSRITTK-NSREVSKRALHLIDSSGKEVTATLWGEEAEKFDGSG 413
Query: 633 KPVIAVKAARVSEFQGNLL----------------------------------------- 651
+PV+A+K AR+S+F G L
Sbjct: 414 QPVVAIKGARLSDFGGRSLSALFSSTIMVNPDIPEAFRLRAWYDREGYAVNSQSLTERRS 473
Query: 652 ----------LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 701
+ +++++ +G DKA+Y S + R N Y+ACPS DCNKKVI Q
Sbjct: 474 TNSGSRMNWKTLSDVKNENMGHEDKAEYFSCLATVVYMRKENCLYQACPSADCNKKVIIQ 533
Query: 702 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 761
+NG+YRCEKCN+EF+ F YR +L + D+ ++ WVT FQ AE +LG +AQ +G+ E
Sbjct: 534 HNGLYRCEKCNREFSDFKYRFLLSANLADFGDNQWVTCFQETAEVLLGHSAQTLGQLRET 593
Query: 762 HPA-----LKKALFTQYIFRLRAKLEHYN 785
A +KA F +IF+ R KLE YN
Sbjct: 594 DEAAFDEVFQKANFRTHIFKNRVKLETYN 622
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 128/325 (39%), Positives = 198/325 (60%), Gaps = 9/325 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK++S++ NDYEM+ ++++PC +++ ++P++ FV ++ + D IDV+G+
Sbjct: 307 ANKQYSTLKNDYEMTLHAHSSIVPCEDNQ--SIPTMNCNFVQIEELENRDKDAIIDVIGI 364
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C A ++S +T K N + KR + L+D S VT TLWG+EAE FD S +PV+A+K AR
Sbjct: 365 CKKAEDVSRITTK-NSREVSKRALHLIDSSGKEVTATLWGEEAEKFDGSGQPVVAIKGAR 423
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
+S+F GG++LS SS + +NPDIPE +L+ W+ + G+ N
Sbjct: 424 LSDF-GGRSLSALFSSTIMVNPDIPEAFRLRAWYDREGYAVNSQSLTERRSTNSGSRMNW 482
Query: 186 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 245
+ +++++ +G DKA+Y S + R N Y+ACPS DCNKKVI Q+NG+YRCEK
Sbjct: 483 KTLSDVKNENMGHEDKAEYFSCLATVVYMRKENCLYQACPSADCNKKVIIQHNGLYRCEK 542
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----L 300
CN+EF+ F YR +L + D+ ++ WVT FQ AE +LG +AQ +G+ E A
Sbjct: 543 CNREFSDFKYRFLLSANLADFGDNQWVTCFQETAEVLLGHSAQTLGQLRETDEAAFDEVF 602
Query: 301 KKALFTQYIFRLRAKLEHYNGTKKI 325
+KA F +IF+ R KLE YN ++
Sbjct: 603 QKANFRTHIFKNRVKLETYNDESRV 627
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG + S +L TQLN + L + I +K+ + S ++ G R+ + ++++ +
Sbjct: 45 MSDGQHALSSFLLTTQLNHLPEQKLLVQHCICMLKKVVTSTLADG----RTAVTVMDMEV 100
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAAT 417
++ E G +IGNP P N + SS + +AT
Sbjct: 101 VQSAEETGGRIGNPTPYNRDGQMSSPAKKSSAT 133
>gi|242019128|ref|XP_002430017.1| Replication protein A 70 kDa DNA-binding subunit, putative
[Pediculus humanus corporis]
gi|212515079|gb|EEB17279.1| Replication protein A 70 kDa DNA-binding subunit, putative
[Pediculus humanus corporis]
Length = 600
Score = 321 bits (823), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 201/560 (35%), Positives = 288/560 (51%), Gaps = 104/560 (18%)
Query: 315 KLEHYNGTKK----IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGS 370
KL N T++ I DG NSFAM+ATQLND+++ G LSEFTIV+IKRYI S ++
Sbjct: 18 KLTSNNATERYRLLISDGKYHNSFAMIATQLNDLVSSGELSEFTIVKIKRYITSLFNTSE 77
Query: 371 ATNRSVLIILELNIIKPGTEIGFKIGNPQ---PLNTNTDNSSTQQTPAA---------TN 418
+ ++ ++ IG K N + P + Q AA T
Sbjct: 78 KERYCIFNVVSVSF----RYIGLKDSNEKTEMPPENQPQATKPQANKAALYKVFKKLETK 133
Query: 419 TNGSNGVHNNVAI----------PR-QASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPI 467
+ V N+ I P+ A HPI SLSPYQN+W IKARVTNK
Sbjct: 134 IYINKIVCTNIFIFVLGFSFGNKPKLTAQVSTGTIHPISSLSPYQNRWCIKARVTNKQAP 193
Query: 468 REWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIE----KDKVYYISNCTLKPA 523
R +++ARG GKLFS+ DESGEI+ T FN ++F D+++ K K++Y
Sbjct: 194 RNYSSARGEGKLFSVVFTDESGEIKCTGFNSAVDKFSDLLQVSLRKLKLFY--------- 244
Query: 524 NKKFSS-INNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 582
FS+ + + + +V PC ED+VG +PS Y FVP+ + E+S D +DV+GV
Sbjct: 245 TYLFSNFLTESFNFYLVSNCSVQPC-EDDVG-LPSAVYNFVPISKLIEMSVDSIVDVIGV 302
Query: 583 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 642
A ++ ++T ++ + KR++ LVD S ASV+MTLWG EA FD S PV+AVK+AR
Sbjct: 303 AKHATDVQNITARSTGRELKKREVVLVDSSGASVSMTLWGSEAVGFDCSENPVVAVKSAR 362
Query: 643 VSEFQG----------------------------------------------------NL 650
++EF G N
Sbjct: 363 LTEFMGGKSLSVQMNSTVLRDPDIDEAHKLRGWWASGGSTLECSSISNKGTSGSGSNTNW 422
Query: 651 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 710
+L ++ Q LG+GDKADY S + + + N YK+CP +DC KK+ID NNG+YRCEK
Sbjct: 423 VLFGDLTSQGLGLGDKADYFSAVVNVLMAKQENCIYKSCPVEDCKKKIIDLNNGVYRCEK 482
Query: 711 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALF 770
CN+E N F YR++L + D++ S WVT+F EA+ +LGV A+ +G+ +++ K F
Sbjct: 483 CNREHNNFKYRMLLSAQVSDYSGSSWVTMFHEEAQKLLGVDAEIIGKMMDNNDESYKEYF 542
Query: 771 T-----QYIFRLRAKLEHYN 785
Q+ + R K+E YN
Sbjct: 543 NDINFKQFQMKFRTKMESYN 562
Score = 269 bits (687), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 132/309 (42%), Positives = 196/309 (63%), Gaps = 7/309 (2%)
Query: 26 TVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYM 85
+V PC ED+VG +PS Y FVP+ + E+S D +DV+GV A ++ ++T ++ +
Sbjct: 265 SVQPC-EDDVG-LPSAVYNFVPISKLIEMSVDSIVDVIGVAKHATDVQNITARSTGRELK 322
Query: 86 KRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSL 145
KR++ LVD S ASV+MTLWG EA FD S PV+AVK+AR++EF GGK+LS+ M+S +
Sbjct: 323 KREVVLVDSSGASVSMTLWGSEAVGFDCSENPVVAVKSARLTEFMGGKSLSVQMNSTVLR 382
Query: 146 NPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYC 205
+PDI E HKL+GW+++ +T G G G+ N +L ++ Q LG+GDKADY
Sbjct: 383 DPDIDEAHKLRGWWASGGSTLECSSISNKGTSGSGSNTNWVLFGDLTSQGLGLGDKADYF 442
Query: 206 SVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGD 265
S + + + N YK+CP +DC KK+ID NNG+YRCEKCN+E N F YR++L + D
Sbjct: 443 SAVVNVLMAKQENCIYKSCPVEDCKKKIIDLNNGVYRCEKCNREHNNFKYRMLLSAQVSD 502
Query: 266 WTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFT-----QYIFRLRAKLEHYN 320
++ S WVT+F EA+ +LGV A+ +G+ +++ K F Q+ + R K+E YN
Sbjct: 503 YSGSSWVTMFHEEAQKLLGVDAEIIGKMMDNNDESYKEYFNDINFKQFQMKFRTKMESYN 562
Query: 321 GTKKIPDGV 329
K++ V
Sbjct: 563 DEKRLKTTV 571
>gi|297271569|ref|XP_002800290.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Macaca mulatta]
Length = 532
Score = 319 bits (817), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 178/465 (38%), Positives = 256/465 (55%), Gaps = 83/465 (17%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ LS I QI R+IV+ + G R V+I++EL +
Sbjct: 74 MSDGLNTLSSFMLATQLNPLVEQERLSSNCICQIHRFIVNTLKDG----RRVVILMELEV 129
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAAT---------NTNGSNGVHNNVAIPRQA 435
+K +G KIGNP P N +A +GS+G + V+ A
Sbjct: 130 LKSAEAVGVKIGNPVPYNEGHGQPQAAPPASAGSPAASSKPQQQHGSSGAGSTVSKAYGA 189
Query: 436 S-------APVV---------QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
S P + + PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKL
Sbjct: 190 SKTFGKAGGPSLSNTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKL 249
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FS++L+DESGEIRAT FN++ ++F +IE +KVYY S TLK ANK+F+++ NDYEM+F
Sbjct: 250 FSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFN 309
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
+ T+V+PC +D ++P+V++ F + + S D +D++G+C + + +T ++N +
Sbjct: 310 NETSVMPCEDDR--HLPTVQFDFTGIDDLESKSKDSLVDIIGICKSYEDATKITVRSNNR 367
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG----------- 648
KR+I L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G
Sbjct: 368 EVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTI 427
Query: 649 -----------------------------------------NLLLMREIQDQQLGMGDKA 667
N + E++ + LG GDK
Sbjct: 428 IANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGGNTNWKTLYEVKSENLGQGDKP 487
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCN 712
DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+
Sbjct: 488 DYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCD 532
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/245 (44%), Positives = 163/245 (66%), Gaps = 8/245 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F + + S D +D++G+
Sbjct: 293 ANKQFTAVKNDYEMTFNNETSVMPCEDDR--HLPTVQFDFTGIDDLESKSKDSLVDIIGI 350
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T ++N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 351 CKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGAR 410
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + NPDIPE +KL+GWF + + VS ++GG+GGG
Sbjct: 411 VSDF-GGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQA-LDGVSISDLKSGGVGGGNT 468
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 469 -NWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 527
Query: 243 CEKCN 247
CEKC+
Sbjct: 528 CEKCD 532
>gi|198416884|ref|XP_002127939.1| PREDICTED: similar to MGC107891 protein [Ciona intestinalis]
Length = 607
Score = 317 bits (812), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 186/538 (34%), Positives = 276/538 (51%), Gaps = 87/538 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGV+ ML T LN ++ DG L +IV++ Y + + V+I L L++
Sbjct: 46 LSDGVHSFGTVMLGTNLNHLVNDGILDANSIVRLTHYQSPKMVQNG---KKVIICLSLDV 102
Query: 385 IKPGTEIGFKIGNP-------------------QPLNTNTDNSSTQQTPAATNTNGSNGV 425
++ G E+G +IGNP +P N N +S Q+P T G
Sbjct: 103 VQSGNEVGERIGNPVNYAQASANDGRAVQNENLKP-NQNRMPASAMQSPKPTGKMSFGGK 161
Query: 426 HNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL 485
+ P V+ PI SL+PYQNKW I+ARVT K +REW NARG GKLFS +L
Sbjct: 162 GDAPTTPGGTQTRVM---PIGSLTPYQNKWAIRARVTQKGAMREWKNARGEGKLFSFTVL 218
Query: 486 DESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVI 545
D+SG+I+ T F +E ++F M+E KV+ I+N TLKPAN +++S +DYEM+ T +
Sbjct: 219 DDSGDIKVTCFKEEADKFFSMVEVGKVFCIANATLKPANPQYNSTTHDYEMTLRRDTVIT 278
Query: 546 PCNEDEVGNMPSVKYCFVPLKTIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQKTYMK 603
+D+ +P ++Y F K I+E+ N +D +G+ A +LSSV ++ +
Sbjct: 279 LSEDDDAKLVPKIQYNF---KKISELGNHVNTLVDTIGILKSAEDLSSVMIRSQNREAKV 335
Query: 604 RDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG--------------- 648
R I LVD+S A + +TLWG+EAE F + V+ +K+A+VS+F G
Sbjct: 336 RKINLVDESNAEIQVTLWGQEAEKFTSEESAVVVLKSAKVSDFGGCSMSTIGSTTVTINP 395
Query: 649 ------------------------------------NLLLMREIQDQQLGMGDKADYCSV 672
N + +I+ + LG +K DY +V
Sbjct: 396 DIPEAFSLKQWYETGGKSQATQVLTTGSGGGGNMAANWKTLADIKTENLGTKEKPDYITV 455
Query: 673 RGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWT 732
+ + + N Y+ACP+ CNKKV+D NG YRCEKCN E F YR+IL + + D
Sbjct: 456 KATVLYCKKENILYQACPNDQCNKKVVDLQNGSYRCEKCNSESPNFKYRVILNMHMADEF 515
Query: 733 NSVWVTLFQNEAESILGVTAQEVGE-----STEDHPALKKALFTQYIFRLRAKLEHYN 785
+S WVT FQ++AE +L +TAQ++G+ E ALK F Y F+LR K + +N
Sbjct: 516 DSTWVTCFQDQAEILLNMTAQQLGDLKDTNEQEYEAALKSVDFKSYFFKLRVKSDKFN 573
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 190/327 (58%), Gaps = 11/327 (3%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN--IDV 62
PAN +++S +DYEM+ T + +D+ +P ++Y F K I+E+ N +D
Sbjct: 255 PANPQYNSTTHDYEMTLRRDTVITLSEDDDAKLVPKIQYNF---KKISELGNHVNTLVDT 311
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVK 122
+G+ A +LSSV ++ + R I LVD+S A + +TLWG+EAE F + V+ +K
Sbjct: 312 IGILKSAEDLSSVMIRSQNREAKVRKINLVDESNAEIQVTLWGQEAEKFTSEESAVVVLK 371
Query: 123 AARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAA 182
+A+VS+F GG ++S S+ +++NPDIPE L+ W+ T ++ V G GG A
Sbjct: 372 SAKVSDF-GGCSMSTIGSTTVTINPDIPEAFSLKQWYETGGKSQATQVLTTGSGGGGNMA 430
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + +I+ + LG +K DY +V+ + + N Y+ACP+ CNKKV+D NG YR
Sbjct: 431 ANWKTLADIKTENLGTKEKPDYITVKATVLYCKKENILYQACPNDQCNKKVVDLQNGSYR 490
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-----STEDH 297
CEKCN E F YR+IL + + D +S WVT FQ++AE +L +TAQ++G+ E
Sbjct: 491 CEKCNSESPNFKYRVILNMHMADEFDSTWVTCFQDQAEILLNMTAQQLGDLKDTNEQEYE 550
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKK 324
ALK F Y F+LR K + +N ++
Sbjct: 551 AALKSVDFKSYFFKLRVKSDKFNDEER 577
>gi|392580530|gb|EIW73657.1| hypothetical protein TREMEDRAFT_67478 [Tremella mesenterica DSM
1558]
Length = 596
Score = 315 bits (807), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 186/520 (35%), Positives = 283/520 (54%), Gaps = 87/520 (16%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
MLATQLN ++ L + T++++K ++ + V R ++IIL L ++ P + G K
Sbjct: 62 GMLATQLNPMVDSKELDKNTVIKLKTFVTNVVQ-----GRKLIIILTLEVV-PWS--GEK 113
Query: 395 IGNPQPLNTNTDNSSTQQTPAA-------TNTNGSNGVHNNVAIPRQASAPVVQTHPIVS 447
IGNP TN + ++ P + N N S V + A+AP+ +PI
Sbjct: 114 IGNP----TNVEQAAPLAAPQSVLKPSTTANVNASKPVAKQPQ--KTAAAPMGPLYPIEG 167
Query: 448 LSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMI 507
LSPYQNKWTIKARVT K+ ++ W+N RG GKLFS+ +D++GEIRAT FN+ ++F+D++
Sbjct: 168 LSPYQNKWTIKARVTQKSDLKHWSNQRGEGKLFSVTFMDDTGEIRATGFNETVDQFYDLL 227
Query: 508 EKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKT 567
++ KVY++S + A K+F+++NN+YE++F +ST + PC+++ V P +KY F +
Sbjct: 228 QEGKVYFVSRARINIAKKQFNNVNNEYEITFENSTEIQPCDDESV---PQIKYNFKSVGD 284
Query: 568 IAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET 627
+ ++ DE DV+GV + EL SVT K K + KRDI LVDQS SV +TLWGK+AET
Sbjct: 285 LGDLQKDELCDVIGVVKEVGELGSVTSKATNKPFAKRDIQLVDQSGQSVRLTLWGKQAET 344
Query: 628 FDASNKPVIAVK------------------------------------------------ 639
F A ++PVIA K
Sbjct: 345 FQADDEPVIAFKGVKVGDFGGRSLSMFSSATMALNPDIPEAHSLRGWYDAEGRSKHFQAY 404
Query: 640 -AARVSEFQGNLLLMREIQ------DQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQ 692
+A VS G + EI+ D+QLGM DK DY + + + + +Y AC +
Sbjct: 405 TSATVSNSDGQITKPSEIKTIGQAKDEQLGMSDKTDYFTTQATVSFIKSETFSYPACANP 464
Query: 693 D-CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVT 751
D CNKKV D+ +G +RCEKC+K + + +R IL + + D+ S W+T F AE I+G++
Sbjct: 465 DGCNKKVTDEGSG-WRCEKCDKTWPSPIHRYILSMNVMDYAGSFWITAFNEVAEQIMGIS 523
Query: 752 AQEV------GESTEDHPALKKALFTQYIFRLRAKLEHYN 785
A E+ G E + +KA Y F++ AK + +N
Sbjct: 524 ANELMEMRDNGNDVEFQRSFQKASGRTYNFQMMAKQDSFN 563
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 126/331 (38%), Positives = 199/331 (60%), Gaps = 16/331 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+F+++NN+YE++F +ST + PC+++ V P +KY F + + ++ DE DV+GV
Sbjct: 243 AKKQFNNVNNEYEITFENSTEIQPCDDESV---PQIKYNFKSVGDLGDLQKDELCDVIGV 299
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ EL SVT K K + KRDI LVDQS SV +TLWGK+AETF A ++PVIA K +
Sbjct: 300 VKEVGELGSVTSKATNKPFAKRDIQLVDQSGQSVRLTLWGKQAETFQADDEPVIAFKGVK 359
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRTGGMGGG---A 181
V +F GG++LS+ S+ ++LNPDIPE H L+GW+ + ++ F+ + T G
Sbjct: 360 VGDF-GGRSLSMFSSATMALNPDIPEAHSLRGWYDAEGRSKHFQAYTSATVSNSDGQITK 418
Query: 182 AGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD-CNKKVIDQNNGM 240
+ + + +D+QLGM DK DY + + + + +Y AC + D CNKKV D+ +G
Sbjct: 419 PSEIKTIGQAKDEQLGMSDKTDYFTTQATVSFIKSETFSYPACANPDGCNKKVTDEGSG- 477
Query: 241 YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV------GEST 294
+RCEKC+K + + +R IL + + D+ S W+T F AE I+G++A E+ G
Sbjct: 478 WRCEKCDKTWPSPIHRYILSMNVMDYAGSFWITAFNEVAEQIMGISANELMEMRDNGNDV 537
Query: 295 EDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
E + +KA Y F++ AK + +N ++
Sbjct: 538 EFQRSFQKASGRTYNFQMMAKQDSFNDQPRV 568
>gi|443893823|dbj|GAC71279.1| hypothetical protein PANT_2d00035 [Pseudozyma antarctica T-34]
Length = 606
Score = 315 bits (807), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 187/534 (35%), Positives = 284/534 (53%), Gaps = 87/534 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGV + AMLA+Q ++ G L + +V+I +Y +S S R +LI+L+L++
Sbjct: 55 LSDGVKY-AQAMLASQKRSMVESGELEKHCLVRISQY-----ASNSVQGRRILILLDLSV 108
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNS-----STQQTPAATNTNGSNGVHNNVA--IPRQASA 437
+ P T +IG+P TN D+S +Q A G++ V NN A SA
Sbjct: 109 VHPPT--ADRIGSP----TNVDDSIKPEGGVKQEGGAGGALGNSNVGNNSAGRTTPATSA 162
Query: 438 PVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFN 497
+ +PI LSPYQN+WTIKARVT+K+ IR W+N RG GKLFS++LLD+SGEI+AT FN
Sbjct: 163 AGMPIYPIEGLSPYQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSGEIKATGFN 222
Query: 498 DECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPS 557
D +RF+ M++++ VY IS + A K+FS++ N+YE++F +ST + C + ++P
Sbjct: 223 DAVDRFYSMLQENHVYLISKARVNIAKKQFSNLQNEYEITFENSTEIEECTD--ATDVPE 280
Query: 558 VKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVT 617
VKY FV + + + P++ DV+GV ELS + K +Q+ KR++TLVDQ Q SV
Sbjct: 281 VKYEFVRINELESVEPNQTCDVIGVLDSYGELSEIVSKASQRPVQKRELTLVDQGQRSVR 340
Query: 618 MTLWGKEAETF----DASNKPVIAVKAAR--------VSEFQGNLLLMR----------- 654
+TLWGK AE F KPVIA K + +S F + +L+
Sbjct: 341 LTLWGKNAENFPNHAGVDEKPVIAFKGVKVGDFGGRSLSMFSSSTMLINPDITESHVLRG 400
Query: 655 --------------------------------------EIQDQQLGMGDKADYCSVRGII 676
+++DQ LGM +K DY +VR +
Sbjct: 401 WFDNDGAHAQFQPFTNGGGAGGAMGGGAANMAERRTIAQVKDQNLGMTEKPDYFNVRATV 460
Query: 677 QVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW 736
+ N Y ACPS CNKKV + G +RCEKC++ + YR IL + D T +W
Sbjct: 461 VYIKQENLYYTACPSDGCNKKVTPDHEGNWRCEKCDRSYEQPEYRYILSTNVADATGQIW 520
Query: 737 VTLFQNEAESILGVTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKLEHYN 785
++ F ++A ++G++A E+ + E+ + L +A Y F RAK++ +N
Sbjct: 521 LSGFNDDATKLMGMSAGELHKLREESESEFTAVLHRAANRMYTFNCRAKMDSFN 574
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 127/358 (35%), Positives = 200/358 (55%), Gaps = 21/358 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ N+YE++F +ST + C + ++P VKY FV + + + P++ DV+GV
Sbjct: 248 AKKQFSNLQNEYEITFENSTEIEECTD--ATDVPEVKYEFVRINELESVEPNQTCDVIGV 305
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF----DASNKPVIAV 121
ELS + K +Q+ KR++TLVDQ Q SV +TLWGK AE F KPVIA
Sbjct: 306 LDSYGELSEIVSKASQRPVQKRELTLVDQGQRSVRLTLWGKNAENFPNHAGVDEKPVIAF 365
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGG 180
K +V +F GG++LS+ SS + +NPDI E H L+GWF + +F+P + G G
Sbjct: 366 KGVKVGDF-GGRSLSMFSSSTMLINPDITESHVLRGWFDNDGAHAQFQPFTNGGGAGGAM 424
Query: 181 AAGNLLL-----MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVID 235
G + + +++DQ LGM +K DY +VR + + N Y ACPS CNKKV
Sbjct: 425 GGGAANMAERRTIAQVKDQNLGMTEKPDYFNVRATVVYIKQENLYYTACPSDGCNKKVTP 484
Query: 236 QNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE 295
+ G +RCEKC++ + YR IL + D T +W++ F ++A ++G++A E+ + E
Sbjct: 485 DHEGNWRCEKCDRSYEQPEYRYILSTNVADATGQIWLSGFNDDATKLMGMSAGELHKLRE 544
Query: 296 DHPA-----LKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINS---FAMLATQLNDII 345
+ + L +A Y F RAK++ +N ++ ++ + FA +L D I
Sbjct: 545 ESESEFTAVLHRAANRMYTFNCRAKMDSFNDQARVRYTISRAAPVDFAKAGAELVDAI 602
>gi|47221831|emb|CAG08885.1| unnamed protein product [Tetraodon nigroviridis]
Length = 631
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 185/541 (34%), Positives = 278/541 (51%), Gaps = 99/541 (18%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
+LATQLN + L + +KR + +S G R V+++L++ I++ E G I
Sbjct: 67 LLATQLNSLPEKNLLVPHCVCVLKRTTSNTLSDG----RRVIVVLDMEILQSAEESGGLI 122
Query: 396 GNPQPLNTNTDNSST-----------QQTPAATNTNGSNGVHNNVAIPRQAS-------- 436
GNP + ST T A+ +T + P +AS
Sbjct: 123 GNPAAFKDGMASPSTFSPAKASPSTFSPTKASPSTFSPAKASPSTFSPTKASPSTFSPAK 182
Query: 437 ----------------APVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLF 480
P I L+PY +KWTI+ARV NK IR W+N+RG GKLF
Sbjct: 183 ASPSKVSPKKASSSSPGPSTNLISIAQLNPYLSKWTIRARVMNKASIRNWSNSRGEGKLF 242
Query: 481 SIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTH 540
S ++DESGEI+ T+FN+E ++F ++E+ KVYYIS TLK ANK+++++N+DYEM+
Sbjct: 243 SFVVVDESGEIKITVFNNEVDKFFPLVEQGKVYYISKATLKVANKQYNTLNHDYEMTLHA 302
Query: 541 STTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKT 600
++++PC + + ++P+ + FVP+ + D IDV+GVC ++S +T +T+++
Sbjct: 303 HSSIVPCADGQ--DIPAAQCDFVPIAELENRDKDAIIDVIGVCKTVEDVSRITTRTSREV 360
Query: 601 YMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG------------ 648
KR + L+D + V TLWG+EAE FD S +PV+A+K AR+S+F G
Sbjct: 361 -SKRTLHLIDTTGKMVAATLWGEEAEKFDGSEQPVVAIKGARLSDFGGRSLSTLFSSTVM 419
Query: 649 ---------------------------------------NLLLMREIQDQQLGMGDKADY 669
N + E++++ G K DY
Sbjct: 420 VNPDIPEAIRLRAWYDHGGYAQDSQSLSETKSRGSGARMNWKTLSEVKNENFGTRRK-DY 478
Query: 670 CSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIG 729
S + R + Y+ACPS DCNKKVIDQ NG +RCEKCN++F F YRL+L +
Sbjct: 479 FSCVATLLYIRKDSCLYRACPSSDCNKKVIDQFNGWFRCEKCNQDFPNFEYRLLLSANLA 538
Query: 730 DWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKLEHY 784
D+ ++ WVT FQ AE +LG +A+ +G + A +KA FT YIF++R KLE Y
Sbjct: 539 DFGDNQWVTCFQETAEVLLGHSAETLGRLRDTDEAAFDAVFQKANFTSYIFKIRVKLETY 598
Query: 785 N 785
N
Sbjct: 599 N 599
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 127/325 (39%), Positives = 197/325 (60%), Gaps = 10/325 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+++++N+DYEM+ ++++PC + + ++P+ + FVP+ + D IDV+GV
Sbjct: 285 ANKQYNTLNHDYEMTLHAHSSIVPCADGQ--DIPAAQCDFVPIAELENRDKDAIIDVIGV 342
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C ++S +T +T+++ KR + L+D + V TLWG+EAE FD S +PV+A+K AR
Sbjct: 343 CKTVEDVSRITTRTSREV-SKRTLHLIDTTGKMVAATLWGEEAEKFDGSEQPVVAIKGAR 401
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
+S+F GG++LS SS + +NPDIPE +L+ W+ + T G GA N
Sbjct: 402 LSDF-GGRSLSTLFSSTVMVNPDIPEAIRLRAWYDHGGYAQDSQSLSETKSRGSGARMNW 460
Query: 186 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 245
+ E++++ G K DY S + R + Y+ACPS DCNKKVIDQ NG +RCEK
Sbjct: 461 KTLSEVKNENFGTRRK-DYFSCVATLLYIRKDSCLYRACPSSDCNKKVIDQFNGWFRCEK 519
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----L 300
CN++F F YRL+L + D+ ++ WVT FQ AE +LG +A+ +G + A
Sbjct: 520 CNQDFPNFEYRLLLSANLADFGDNQWVTCFQETAEVLLGHSAETLGRLRDTDEAAFDAVF 579
Query: 301 KKALFTQYIFRLRAKLEHYNGTKKI 325
+KA FT YIF++R KLE YN ++
Sbjct: 580 QKANFTSYIFKIRVKLETYNDESRV 604
>gi|19111884|ref|NP_595092.1| DNA replication factor A subunit Ssb1 [Schizosaccharomyces pombe
972h-]
gi|2498845|sp|Q92372.1|RFA1_SCHPO RecName: Full=Replication factor A protein 1; AltName:
Full=Single-stranded DNA-binding protein p68 subunit
gi|1502413|gb|AAC49437.1| single-stranded DNA binding protein p68 subunit
[Schizosaccharomyces pombe]
gi|1814272|gb|AAC49694.1| Rpa1 [Schizosaccharomyces pombe]
gi|4049512|emb|CAA22533.1| DNA replication factor A subunit Ssb1 [Schizosaccharomyces pombe]
Length = 609
Score = 312 bits (799), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 185/530 (34%), Positives = 288/530 (54%), Gaps = 93/530 (17%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGF- 393
+ML+TQLN ++ + L + VQ+ ++ V+ + R +LI+L LN++ TE+G
Sbjct: 60 SMLSTQLNHLVAENKLQKGAFVQLTQFTVNVMKE-----RKILIVLGLNVL---TELGVM 111
Query: 394 -KIGNPQPLNT---------NTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQT- 442
KIGNP L T +N+S +T +T+TN G NN A A P+++
Sbjct: 112 DKIGNPAGLETVDALRQQQNEQNNASAPRTGISTSTNSFYG--NNAAATAPAPPPMMKKP 169
Query: 443 ----------HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIR 492
+PI LSPYQNKWTI+ARVTNK+ ++ W+N RG GKLFS++LLDESGEIR
Sbjct: 170 AAPNSLSTIIYPIEGLSPYQNKWTIRARVTNKSEVKHWHNQRGEGKLFSVNLLDESGEIR 229
Query: 493 ATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEV 552
AT FND+ + F+D++++ VYYIS C + A K+++++ N+YE+ F T + ED+
Sbjct: 230 ATGFNDQVDAFYDILQEGSVYYISRCRVNIAKKQYTNVQNEYELMFERDTEIRKA-EDQT 288
Query: 553 GNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS 612
+P K+ FV L+ + +++ D IDV+GV + + +T + + + KRDIT+VDQ+
Sbjct: 289 A-VPVAKFSFVSLQEVGDVAKDAVIDVIGVLQNVGPVQQITSRATSRGFDKRDITIVDQT 347
Query: 613 QASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMR---------EIQD----- 658
+ +TLWGK A F S + ++A K +V++FQG L M +IQ+
Sbjct: 348 GYEMRVTLWGKTAIEFSVSEESILAFKGVKVNDFQGRSLSMLTSSTMSVDPDIQESHLLK 407
Query: 659 ---------------------------------------QQLGMGDKADYCSVRGIIQVF 679
+ LGM + DY S++G I
Sbjct: 408 GWYDGQGRGQEFAKHSVISSTLSTTGRSAERKNIAEVQAEHLGMSETPDYFSLKGTIVYI 467
Query: 680 RGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTL 739
R N +Y ACP+ DCNKKV DQ G +RCEKCNKE++ YR I+ + +GD T +W+ +
Sbjct: 468 RKKNVSYPACPAADCNKKVFDQ-GGSWRCEKCNKEYDAPQYRYIITIAVGDHTGQLWLNV 526
Query: 740 FQNEAESILGVTAQEVGESTEDHP-----ALKKALFTQYIFRLRAKLEHY 784
F + + I+ TA E+ + E+ + +A + YIF+ RAK +++
Sbjct: 527 FDDVGKLIMHKTADELNDLQENDENAFMNCMAEACYMPYIFQCRAKQDNF 576
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 114/329 (34%), Positives = 189/329 (57%), Gaps = 15/329 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+++++ N+YE+ F T + ED+ +P K+ FV L+ + +++ D IDV+GV
Sbjct: 260 AKKQYTNVQNEYELMFERDTEIRKA-EDQTA-VPVAKFSFVSLQEVGDVAKDAVIDVIGV 317
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ + +T + + + KRDIT+VDQ+ + +TLWGK A F S + ++A K +
Sbjct: 318 LQNVGPVQQITSRATSRGFDKRDITIVDQTGYEMRVTLWGKTAIEFSVSEESILAFKGVK 377
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTN----TRFEPVSQRTGGMGGGA 181
V++FQ G++LS+ SS +S++PDI E H L+GW+ Q + +S G A
Sbjct: 378 VNDFQ-GRSLSMLTSSTMSVDPDIQESHLLKGWYDGQGRGQEFAKHSVISSTLSTTGRSA 436
Query: 182 AGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMY 241
+ E+Q + LGM + DY S++G I R N +Y ACP+ DCNKKV DQ G +
Sbjct: 437 ERKNIA--EVQAEHLGMSETPDYFSLKGTIVYIRKKNVSYPACPAADCNKKVFDQ-GGSW 493
Query: 242 RCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP--- 298
RCEKCNKE++ YR I+ + +GD T +W+ +F + + I+ TA E+ + E+
Sbjct: 494 RCEKCNKEYDAPQYRYIITIAVGDHTGQLWLNVFDDVGKLIMHKTADELNDLQENDENAF 553
Query: 299 --ALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ +A + YIF+ RAK +++ G ++
Sbjct: 554 MNCMAEACYMPYIFQCRAKQDNFKGEMRV 582
>gi|392595534|gb|EIW84857.1| replication factor-A protein 1 [Coniophora puteana RWD-64-598 SS2]
Length = 598
Score = 306 bits (784), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 188/522 (36%), Positives = 269/522 (51%), Gaps = 72/522 (13%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DGV+ AMLAT+LND++ + L + T+V I+ ++ + ++I+L L +
Sbjct: 54 ISDGVHFIQ-AMLATKLNDLVANNELGKNTVV-----IIDQLTCNFVQEKRLIIVLNLQV 107
Query: 385 IKPGTE-IGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTH 443
+ E IG P + +T+ + V ++ A RQ
Sbjct: 108 LTRDEEKIGTPSPPPSVAAAAAAAGAGPSAAPQQSTSNAQPVRSSAA-ARQTQTKGRNVF 166
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI LSPYQN WTIKARVT K+ +R W+NARG GKLF++ L+DESGEIRAT FN +
Sbjct: 167 PIEGLSPYQNNWTIKARVTQKSEVRNWSNARGEGKLFNVTLMDESGEIRATGFNAVVDEL 226
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+ +E+ KVYY+S + A KKFS+I NDYE+S +T V C + N+P++KY F+
Sbjct: 227 YPKLEEGKVYYVSKARVNLAKKKFSNIQNDYELSLEKNTEVEECL--DTTNLPTIKYNFI 284
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
L + ++ D N DV+G+ +A LS +T KTN +T KR++T+VD+SQ SV MTLWGK
Sbjct: 285 SLGELESLAKDVNCDVIGIVKEAGPLSEITSKTN-RTIPKRELTIVDKSQFSVRMTLWGK 343
Query: 624 EAETFDASNKPVIAVKAARVSEFQG----------------------------------- 648
+AE + A ++PVIA K +V ++ G
Sbjct: 344 QAELYSAEDQPVIAFKGVKVGDYGGRSLSMMSSSLMSISPDIPEAHALRGWYDGIGNEKT 403
Query: 649 -----------------NLLLMREIQD---QQLGMGDKADYCSVRGIIQVFRGSNTTYKA 688
N +R I D QLGMGDKAD+ S R I + N Y A
Sbjct: 404 FTAQSSAVPLGASFGGFNRSELRHISDVKDSQLGMGDKADFFSTRASIMHIKTENIAYPA 463
Query: 689 CPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL 748
C +Q CNKKV D +G +RCEKC+K F YR I+ + + DW+ W+ F + E+I
Sbjct: 464 CANQGCNKKVTDVGDG-WRCEKCDKTFERPEYRYIVSIAVADWSGQAWLQGFNDAGEAIF 522
Query: 749 GVTAQEVGE-----STEDHPALKKALFTQYIFRLRAKLEHYN 785
G +A EV E E + + +A + F RAK + YN
Sbjct: 523 GKSADEVMEIKNCDEQEYNAVMAQATGVTFNFGCRAKQDTYN 564
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 134/334 (40%), Positives = 198/334 (59%), Gaps = 14/334 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A KKFS+I NDYE+S +T V C + N+P++KY F+ L + ++ D N DV+G+
Sbjct: 246 AKKKFSNIQNDYELSLEKNTEVEECLD--TTNLPTIKYNFISLGELESLAKDVNCDVIGI 303
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+A LS +T KTN +T KR++T+VD+SQ SV MTLWGK+AE + A ++PVIA K +
Sbjct: 304 VKEAGPLSEITSKTN-RTIPKRELTIVDKSQFSVRMTLWGKQAELYSAEDQPVIAFKGVK 362
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRT---GGMGGGA 181
V ++ GG++LS+ SS++S++PDIPE H L+GW+ N + F S GG
Sbjct: 363 VGDY-GGRSLSMMSSSLMSISPDIPEAHALRGWYDGIGNEKTFTAQSSAVPLGASFGGFN 421
Query: 182 AGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMY 241
L + +++D QLGMGDKAD+ S R I + N Y AC +Q CNKKV D +G +
Sbjct: 422 RSELRHISDVKDSQLGMGDKADFFSTRASIMHIKTENIAYPACANQGCNKKVTDVGDG-W 480
Query: 242 RCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-----STED 296
RCEKC+K F YR I+ + + DW+ W+ F + E+I G +A EV E E
Sbjct: 481 RCEKCDKTFERPEYRYIVSIAVADWSGQAWLQGFNDAGEAIFGKSADEVMEIKNCDEQEY 540
Query: 297 HPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVN 330
+ + +A + F RAK + YN ++ G++
Sbjct: 541 NAVMAQATGVTFNFGCRAKQDTYNDNTRVRYGIS 574
>gi|169852738|ref|XP_001833051.1| replication factor-A protein 1 [Coprinopsis cinerea okayama7#130]
gi|116505845|gb|EAU88740.1| replication factor-A protein 1 [Coprinopsis cinerea okayama7#130]
Length = 604
Score = 305 bits (781), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 182/524 (34%), Positives = 273/524 (52%), Gaps = 75/524 (14%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DGV+ AMLATQLN+++ + ++ + T+ ++R + V + ++++LEL +
Sbjct: 59 ISDGVHFIQ-AMLATQLNELVQNNSIGKHTVAVVERATCNYVQE-----KRLIVVLELRV 112
Query: 385 IKPGTEIGFKIGNPQPLNTNT----DNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVV 440
+ + KIG+PQ L ++ D++S P + T+G + + P
Sbjct: 113 V---AHLPDKIGDPQQLGPDSKRALDSASVTPAPQSVATSGPSTSTKTAPAKPATTGPQR 169
Query: 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDEC 500
+PI LSPYQN WTIKARVT K+ +++W+NA+G GKLF++ +D+SGEIRAT FN
Sbjct: 170 GVYPIEGLSPYQNNWTIKARVTQKSEMKQWSNAQGEGKLFNVTFMDDSGEIRATAFNLVA 229
Query: 501 NRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKY 560
+ + +E+ KVYY+S + A KKFS+I NDYE+S +T + C+ E N+P++KY
Sbjct: 230 DDLYPKLEEGKVYYVSKARVGLAKKKFSNIPNDYELSLERNTEIEECH--ETTNLPTIKY 287
Query: 561 CFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTL 620
FVPL + ++ D DV+GV D E+ ++T ++N + KRD+TLVD+S SV MTL
Sbjct: 288 NFVPLNGLDALAKDAICDVIGVVKDVGEVGTITSRSNNRQISKRDLTLVDKSAYSVRMTL 347
Query: 621 WGKEAETFDASNKPVIAVKAARVSEFQGNLLLM--------------------------- 653
WGK+AE F + +IA K RV +F G L M
Sbjct: 348 WGKQAEQFKVEPESIIAFKGVRVGDFNGRNLSMTSASTMQVNPDIEECFTLRGWYDSQGQ 407
Query: 654 ------------------------REIQD-QQLGMG--DKADYCSVRGIIQVFRGSNTTY 686
R ++D +Q G G DK DY S R I + N Y
Sbjct: 408 TQTFQAQSSNNLGGTSLGFRRDEARTLEDVKQAGFGQSDKPDYFSTRATIIHIKDDNIAY 467
Query: 687 KACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAES 746
ACP+Q CNKKVI++ +G +RCEKC K F YR I+ +M+ D T W F +
Sbjct: 468 PACPTQGCNKKVIEEADG-WRCEKCEKVFEAPEYRYIMSMMVADHTGKAWFQGFNEVGVT 526
Query: 747 ILGVTAQEVGE-STEDHPALK----KALFTQYIFRLRAKLEHYN 785
+ G++A ++ + DH K A Y F RAK + +N
Sbjct: 527 VYGMSANDLVQIKNNDHAQYKAIQYHAACNTYNFSCRAKEDEFN 570
Score = 236 bits (602), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 126/335 (37%), Positives = 192/335 (57%), Gaps = 16/335 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A KKFS+I NDYE+S +T + C+E N+P++KY FVPL + ++ D DV+GV
Sbjct: 252 AKKKFSNIPNDYELSLERNTEIEECHE--TTNLPTIKYNFVPLNGLDALAKDAICDVIGV 309
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D E+ ++T ++N + KRD+TLVD+S SV MTLWGK+AE F + +IA K R
Sbjct: 310 VKDVGEVGTITSRSNNRQISKRDLTLVDKSAYSVRMTLWGKQAEQFKVEPESIIAFKGVR 369
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRTGGMGGGAAG- 183
V +F G+ LS++ +S + +NPDI EC L+GW+ +Q T+ F+ +Q + +GG + G
Sbjct: 370 VGDFN-GRNLSMTSASTMQVNPDIEECFTLRGWYDSQGQTQTFQ--AQSSNNLGGTSLGF 426
Query: 184 ---NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGM 240
+ +++ G DK DY S R I + N Y ACP+Q CNKKVI++ +G
Sbjct: 427 RRDEARTLEDVKQAGFGQSDKPDYFSTRATIIHIKDDNIAYPACPTQGCNKKVIEEADG- 485
Query: 241 YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-STEDHPA 299
+RCEKC K F YR I+ +M+ D T W F ++ G++A ++ + DH
Sbjct: 486 WRCEKCEKVFEAPEYRYIMSMMVADHTGKAWFQGFNEVGVTVYGMSANDLVQIKNNDHAQ 545
Query: 300 LK----KALFTQYIFRLRAKLEHYNGTKKIPDGVN 330
K A Y F RAK + +NG +++ G++
Sbjct: 546 YKAIQYHAACNTYNFSCRAKEDEFNGVRRVRFGIS 580
>gi|340714568|ref|XP_003395799.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Bombus terrestris]
Length = 595
Score = 301 bits (771), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 150/325 (46%), Positives = 217/325 (66%), Gaps = 4/325 (1%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG INSF MLATQLN +ITD L+EF+I QI RY +S V++ R V++IL +++
Sbjct: 44 VSDGKRINSFTMLATQLNSMITDNVLTEFSICQINRYAISVVNNAGKQKR-VMVILSVDL 102
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHP 444
G E+G KIGNP + + ++ Q +A T+ + +Q+S + T P
Sbjct: 103 KVAGDEVGHKIGNPTNADADGESKPAQSVQSAQTTSQQQSSLVSKHSGQQSSTSDISTIP 162
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
IV+LSPYQN+W IKARV NK+ IR W+N+RG GKLFS+DL+DESGEIR T F D+C++F+
Sbjct: 163 IVALSPYQNRWVIKARVVNKSAIRTWSNSRGEGKLFSMDLVDESGEIRCTAFRDQCDKFY 222
Query: 505 DMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN-MPSVKYCFV 563
DMIE KVYYIS TLK ANK+F+++ NDYEMS T + +IPC+ ++G+ +P++++ F+
Sbjct: 223 DMIEIGKVYYISRATLKTANKQFNNLKNDYEMSLTGDSEIIPCH--DIGDKIPTLQFDFI 280
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
P+ I + ++ ID+L + +L + +T K KRDI L+D+S VT+TLWG
Sbjct: 281 PINDIEQKEKNDIIDILAIVKSRGDLQMLVSRTTGKDMKKRDINLIDESNTMVTLTLWGT 340
Query: 624 EAETFDASNKPVIAVKAARVSEFQG 648
+AE F ++ PV+A+K ARV EF G
Sbjct: 341 QAEEFSGNDNPVLAIKGARVGEFNG 365
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 135/330 (40%), Positives = 209/330 (63%), Gaps = 17/330 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN-MPSVKYCFVPLKTIAEISPDENIDVLG 64
ANK+F+++ NDYEMS T + +IPC++ +G+ +P++++ F+P+ I + ++ ID+L
Sbjct: 241 ANKQFNNLKNDYEMSLTGDSEIIPCHD--IGDKIPTLQFDFIPINDIEQKEKNDIIDILA 298
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+ +L + +T K KRDI L+D+S VT+TLWG +AE F ++ PV+A+K A
Sbjct: 299 IVKSRGDLQMLVSRTTGKDMKKRDINLIDESNTMVTLTLWGTQAEEFSGNDNPVLAIKGA 358
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGGGAAG 183
RV EF GGK LS + + ++PDIPE H+L+GWF +T + +P+S R G +
Sbjct: 359 RVGEFNGGKNLSTLSGTAVQIDPDIPEAHRLRGWFNTTGCHEEAKPLS-RAFGSAAQMSQ 417
Query: 184 NLLLMREIQ---DQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGM 240
L+ + E D+++G + +V+ I + R N YK+CPS++C KKVIDQ NGM
Sbjct: 418 ALITIGEANSQIDKKIG----PEIFTVKATINLLRTENILYKSCPSENCKKKVIDQANGM 473
Query: 241 YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPA 299
YRCEKCNKEF F YRL+ + + DWT+++WVT F +E E ILG+TAQE+GE E D+ A
Sbjct: 474 YRCEKCNKEFPNFKYRLLGSLSLADWTDNMWVTAFNDETEKILGITAQELGELKENDNDA 533
Query: 300 LKKAL----FTQYIFRLRAKLEHYNGTKKI 325
+ L F +IF++R K+E + ++
Sbjct: 534 YLEKLGDVTFKSFIFKIRTKMETFGDENRL 563
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 83/119 (69%), Gaps = 5/119 (4%)
Query: 671 SVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGD 730
+V+ I + R N YK+CPS++C KKVIDQ NGMYRCEKCNKEF F YRL+ + + D
Sbjct: 439 TVKATINLLRTENILYKSCPSENCKKKVIDQANGMYRCEKCNKEFPNFKYRLLGSLSLAD 498
Query: 731 WTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPALKKAL----FTQYIFRLRAKLEHY 784
WT+++WVT F +E E ILG+TAQE+GE E D+ A + L F +IF++R K+E +
Sbjct: 499 WTDNMWVTAFNDETEKILGITAQELGELKENDNDAYLEKLGDVTFKSFIFKIRTKMETF 557
>gi|444516397|gb|ELV11146.1| Replication protein A 70 kDa DNA-binding subunit [Tupaia chinensis]
Length = 474
Score = 298 bits (763), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 163/430 (37%), Positives = 231/430 (53%), Gaps = 88/430 (20%)
Query: 408 SSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPI 467
SST + A+ G G ++ + + PI SL+PYQ+KWTI ARVTNK+ I
Sbjct: 38 SSTSKAYGASKIFGKAG---GASLSNTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQI 94
Query: 468 REWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKF 527
R W+N+RG GKLF+I+L+DE+GEIRAT FN++ ++F +IE +KVYY S TLK ANK+F
Sbjct: 95 RTWSNSRGEGKLFAIELVDETGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQF 154
Query: 528 SSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAA 587
+++ NDYEM+F + T+V+PC +D ++P+V++ F + + S D +D++GVC
Sbjct: 155 TTVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFTKIDELESKSKDSLVDIIGVCKSYE 212
Query: 588 ELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQ 647
+ + +T K+ + KR+I L+D S VT TLWG++A+ FD S +PV+AVK ARVS+F
Sbjct: 213 DATKITVKSTNREVSKRNIYLMDTSGKVVTTTLWGEDADKFDGSRQPVLAVKGARVSDFG 272
Query: 648 G----------------------------------------------------NLLLMRE 655
G N + E
Sbjct: 273 GRSLSVLSSSTVIMNPDIPEAYKLRGWFDSEGQALDGVSISDLKSGGGIGSNTNWKTLYE 332
Query: 656 IQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEF 715
++ + LG GDKADY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF
Sbjct: 333 VKSENLGQGDKADYFSSVATVVYLRKENCMYQACPNQDCNKKVIDQQNGLYRCEKCDSEF 392
Query: 716 NTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIF 775
F YR+IL + +FQN A F + F
Sbjct: 393 PNFKYRMILS------NEQAFEEVFQN-------------------------ANFRSFTF 421
Query: 776 RLRAKLEHYN 785
++R KLE YN
Sbjct: 422 KIRVKLETYN 431
Score = 236 bits (602), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 185/316 (58%), Gaps = 35/316 (11%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F + + S D +D++GV
Sbjct: 150 ANKQFTTVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFTKIDELESKSKDSLVDIIGV 207
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T K+ + KR+I L+D S VT TLWG++A+ FD S +PV+AVK AR
Sbjct: 208 CKSYEDATKITVKSTNREVSKRNIYLMDTSGKVVTTTLWGEDADKFDGSRQPVLAVKGAR 267
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGMGGGAAGN 184
VS+F GG++LS+ SS + +NPDIPE +KL+GWF ++ +S G G G+ N
Sbjct: 268 VSDF-GGRSLSVLSSSTVIMNPDIPEAYKLRGWFDSEGQALDGVSISDLKSGGGIGSNTN 326
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ E++ + LG GDKADY S + R N Y+ACP+QDCNKKVIDQ NG+YRCE
Sbjct: 327 WKTLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQACPNQDCNKKVIDQQNGLYRCE 386
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKAL 304
KC+ EF F YR+IL + +FQN A
Sbjct: 387 KCDSEFPNFKYRMILS------NEQAFEEVFQN-------------------------AN 415
Query: 305 FTQYIFRLRAKLEHYN 320
F + F++R KLE YN
Sbjct: 416 FRSFTFKIRVKLETYN 431
>gi|170087382|ref|XP_001874914.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650114|gb|EDR14355.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 602
Score = 296 bits (757), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 186/534 (34%), Positives = 268/534 (50%), Gaps = 91/534 (17%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG++ AMLATQLN ++ D T+ T+ I++ + V + ++IIL L +
Sbjct: 55 MSDGIHFIQ-AMLATQLNSMVQDNTIGRHTVAVIEKLTCNYVQ-----EKRLIIILSLRV 108
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHN-------NVAIPRQASA 437
+ E KIG P+ + D PAA+ T +N + + P + +
Sbjct: 109 LAHSAE---KIGEPKQMEAPHD-------PAASVTPVTNTIETFAPPPPVPITKPSKPAE 158
Query: 438 PVVQ------THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEI 491
V +PI LSPYQN WTIKARVT K+ I+ W+N RG GKLF++ L+DE+GEI
Sbjct: 159 QVTSKDGGPSVYPIEGLSPYQNSWTIKARVTQKSEIKTWSNQRGEGKLFNVTLMDETGEI 218
Query: 492 RATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDE 551
RAT FN + + +E+ KVYYIS + A KKFS++ NDYE+S +T V+ C+ E
Sbjct: 219 RATGFNLVVDELYPKLEEGKVYYISKARVNLAKKKFSNLANDYELSLERNTEVVECH--E 276
Query: 552 VGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ 611
N+P +KY FVPL + ++ D DV+GV + + LS +T K + KR++TLVD+
Sbjct: 277 TANVPMIKYSFVPLSGLQDLEKDSVCDVIGVVKEVSALSEITSKATNRQIPKRELTLVDK 336
Query: 612 SQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM------------------ 653
S SV +TLWGK+AE ++A + PVIA K +V +F G L M
Sbjct: 337 SGFSVRLTLWGKQAEQYNAEDSPVIAFKGVKVGDFGGRSLSMFSSSTMHVNPHLEECFAL 396
Query: 654 ---------------------------------REIQD-QQLGMG--DKADYCSVRGIIQ 677
R + D +Q G G DK +Y S R I
Sbjct: 397 RGWYDSSGAEQSFHAHSSAGGGASTMSFNRAEIRSLDDVKQAGFGLPDKPEYFSARATIM 456
Query: 678 VFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWV 737
+ N +Y ACP+Q+CNKKVI Q+ +RCEKC K F +R I+ + + D + W
Sbjct: 457 HIKADNISYPACPTQNCNKKVI-QDGDSWRCEKCEKSFEAPEHRYIMSLAVADASGQAWF 515
Query: 738 TLFQNEAESILGVTAQEV-----GESTEDHPALKKALFTQYIFRLRAKLEHYNK 786
F +I G TA E+ S + + L KA Y F RAK + YN+
Sbjct: 516 QGFNEVGTTIFGKTANELIAIRDSNSAQYNVLLHKANCNTYNFSCRAKQDTYNE 569
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 125/333 (37%), Positives = 185/333 (55%), Gaps = 12/333 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A KKFS++ NDYE+S +T V+ C+E N+P +KY FVPL + ++ D DV+GV
Sbjct: 250 AKKKFSNLANDYELSLERNTEVVECHE--TANVPMIKYSFVPLSGLQDLEKDSVCDVIGV 307
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ + LS +T K + KR++TLVD+S SV +TLWGK+AE ++A + PVIA K +
Sbjct: 308 VKEVSALSEITSKATNRQIPKRELTLVDKSGFSVRLTLWGKQAEQYNAEDSPVIAFKGVK 367
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
V +F GG++LS+ SS + +NP + EC L+GW+ + + GG + N
Sbjct: 368 VGDF-GGRSLSMFSSSTMHVNPHLEECFALRGWYDSSGAEQSFHAHSSAGGGASTMSFNR 426
Query: 186 LLMREIQD-QQLGMG--DKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
+R + D +Q G G DK +Y S R I + N +Y ACP+Q+CNKKVI Q+ +R
Sbjct: 427 AEIRSLDDVKQAGFGLPDKPEYFSARATIMHIKADNISYPACPTQNCNKKVI-QDGDSWR 485
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-----GESTEDH 297
CEKC K F +R I+ + + D + W F +I G TA E+ S + +
Sbjct: 486 CEKCEKSFEAPEHRYIMSLAVADASGQAWFQGFNEVGTTIFGKTANELIAIRDSNSAQYN 545
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKIPDGVN 330
L KA Y F RAK + YN +I G++
Sbjct: 546 VLLHKANCNTYNFSCRAKQDTYNENTRIRYGIS 578
>gi|406860812|gb|EKD13869.1| replication factor-a protein 1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 611
Score = 296 bits (757), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 182/527 (34%), Positives = 281/527 (53%), Gaps = 92/527 (17%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
+MLATQ N ++ +G L + +IV++K+Y + V + +LIIL+L +I+ E+ K
Sbjct: 65 SMLATQANHVVHEGKLKKGSIVRLKQYQANAVKG-----KRILIILDLEVIESLGEME-K 118
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQ------------- 441
IG+P L T PA T G NG + N +ASAP+ Q
Sbjct: 119 IGDPVAL---TVKEEPDVKPANTTIAG-NGFYGNQP---KASAPIKQERALPSRTGPSSS 171
Query: 442 -----THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMF 496
+PI LSPY +KWTIKARVT K+ I+ W+ GKLFS++LLDE+GEI+AT F
Sbjct: 172 ASHATIYPIEGLSPYAHKWTIKARVTQKSDIKTWHKPSSEGKLFSVNLLDETGEIKATGF 231
Query: 497 NDECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNM 555
ND+C++ +++ ++ VYYIS+ C ++ A K+FS+++NDYE++F TV+ ED+ ++
Sbjct: 232 NDQCDQLYELFQEGAVYYISSPCKVQLAKKQFSNLSNDYELTFERD-TVVEKAEDQ-ADV 289
Query: 556 PSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQAS 615
P ++Y F + + I D ID++GV + A+++ + KT QK + KR++TLVD+S S
Sbjct: 290 PQIRYNFTGIGELQNIEKDSMIDIIGVLKEVADVNQIVSKTTQKPFDKRELTLVDESDFS 349
Query: 616 VTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL------------------------ 651
V +T+WGK A +FDA + +IA K A+VS+F G L
Sbjct: 350 VRLTIWGKSAVSFDAIPESIIAFKGAKVSDFGGRSLSLLSSGTMAINPDISEAHKLRGWY 409
Query: 652 ----LMREIQDQQ-------------------------LGMGDKADYCSVRGIIQVFRGS 682
M Q Q LGM ++ DY SV+ I +
Sbjct: 410 DSQGRMNTFQSHQNMSGAGAAGGRSDPLKTIAQVREENLGMSEQPDYFSVKATIVYIKQD 469
Query: 683 NTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQN 742
N Y AC + CNKKVID +G ++CEKCN YR I+ + + D+T +W+ F +
Sbjct: 470 NFAYPACLNDGCNKKVIDMGDGSWQCEKCNVSHPKPEYRYIMSLNVNDYTGQLWLNCFDD 529
Query: 743 EAESILGVTAQEVGESTE-DHPALKKALFTQ----YIFRLRAKLEHY 784
++G + ++ E E D A++KA T YIF+ RAK++++
Sbjct: 530 VGRLVMGHSGDQLMELRENDTAAMEKAFETSNCTTYIFKCRAKMDNF 576
Score = 232 bits (591), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 127/350 (36%), Positives = 205/350 (58%), Gaps = 13/350 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS+++NDYE++F T V+ ED+ ++P ++Y F + + I D ID++GV
Sbjct: 259 AKKQFSNLSNDYELTFERDT-VVEKAEDQ-ADVPQIRYNFTGIGELQNIEKDSMIDIIGV 316
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ A+++ + KT QK + KR++TLVD+S SV +T+WGK A +FDA + +IA K A+
Sbjct: 317 LKEVADVNQIVSKTTQKPFDKRELTLVDESDFSVRLTIWGKSAVSFDAIPESIIAFKGAK 376
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMG--GGAAG 183
VS+F GG++LSL S +++NPDI E HKL+GW+ +Q Q G G GG +
Sbjct: 377 VSDF-GGRSLSLLSSGTMAINPDISEAHKLRGWYDSQGRMNTFQSHQNMSGAGAAGGRSD 435
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
L + +++++ LGM ++ DY SV+ I + N Y AC + CNKKVID +G ++C
Sbjct: 436 PLKTIAQVREENLGMSEQPDYFSVKATIVYIKQDNFAYPACLNDGCNKKVIDMGDGSWQC 495
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPALKK 302
EKCN YR I+ + + D+T +W+ F + ++G + ++ E E D A++K
Sbjct: 496 EKCNVSHPKPEYRYIMSLNVNDYTGQLWLNCFDDVGRLVMGHSGDQLMELRENDTAAMEK 555
Query: 303 ALFTQ----YIFRLRAKLEHYNGTKKIPDGVNINS---FAMLATQLNDII 345
A T YIF+ RAK++++ ++ V S F A +L D+I
Sbjct: 556 AFETSNCTTYIFKCRAKMDNFQDQTRVRYQVMNASPVNFVQEAKKLADLI 605
>gi|350411045|ref|XP_003489220.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Bombus impatiens]
Length = 595
Score = 295 bits (756), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 148/329 (44%), Positives = 216/329 (65%), Gaps = 12/329 (3%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG INSF MLATQLN +ITD L+EF+I QI RY +S V++ R V++IL +++
Sbjct: 44 VSDGKRINSFTMLATQLNSMITDNVLTEFSICQINRYAISVVNNAGKQKR-VMVILSVDL 102
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPR----QASAPVV 440
G E+G KIGNP TN D + + + + + + + Q+S +
Sbjct: 103 KVAGDEVGRKIGNP----TNADADGESKPAQSVQSAQAASQQQSSLVSKHSGQQSSTSDI 158
Query: 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDEC 500
T PIV+LSPYQN+W IKARV NK+ IR W+N+RG GKLFS+DL+DESGEIR T F D+C
Sbjct: 159 STIPIVALSPYQNRWVIKARVVNKSAIRTWSNSRGEGKLFSMDLVDESGEIRCTAFRDQC 218
Query: 501 NRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN-MPSVK 559
++F+DMIE KVYYIS +LK ANK+F+++ NDYEM+ T + +IPC+ ++G+ +P+++
Sbjct: 219 DKFYDMIEIGKVYYISRASLKTANKQFNNLKNDYEMTLTGDSEIIPCH--DIGDKIPTLQ 276
Query: 560 YCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
+ F+P+ I + ++ IDVL + +L + +T K KRD+ L+D+S VT+T
Sbjct: 277 FDFIPINDIEQKEKNDIIDVLAIVKSRGDLQMLVSRTTGKDMKKRDVNLIDESNTMVTLT 336
Query: 620 LWGKEAETFDASNKPVIAVKAARVSEFQG 648
LWG +AE F ++ PV+A+K ARV EF G
Sbjct: 337 LWGTQAEEFSGNDNPVLAIKGARVGEFNG 365
Score = 271 bits (694), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 208/327 (63%), Gaps = 11/327 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN-MPSVKYCFVPLKTIAEISPDENIDVLG 64
ANK+F+++ NDYEM+ T + +IPC++ +G+ +P++++ F+P+ I + ++ IDVL
Sbjct: 241 ANKQFNNLKNDYEMTLTGDSEIIPCHD--IGDKIPTLQFDFIPINDIEQKEKNDIIDVLA 298
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+ +L + +T K KRD+ L+D+S VT+TLWG +AE F ++ PV+A+K A
Sbjct: 299 IVKSRGDLQMLVSRTTGKDMKKRDVNLIDESNTMVTLTLWGTQAEEFSGNDNPVLAIKGA 358
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGGGAAG 183
RV EF GGK LS + + ++PDIPE H+L+GWF +T + +P+S R G +
Sbjct: 359 RVGEFNGGKNLSTLSGTAVQIDPDIPEAHRLRGWFNTTGCHEEAKPLS-RAFGSAAQMSQ 417
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
L+ + E + Q+ + + +V+ I + R N YK+CPS++C KKVIDQ NGMYRC
Sbjct: 418 ALITIGE-ANSQIDKKNGPEIFTVKATINLLRTENILYKSCPSENCKKKVIDQANGMYRC 476
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPA--- 299
EKCNKEF F YRL+ + + DWT+++WVT F +E E ILG+TAQE+GE E D+ A
Sbjct: 477 EKCNKEFPNFKYRLLGSLSLADWTDNMWVTAFNDETEKILGITAQELGELKENDNDAYLE 536
Query: 300 -LKKALFTQYIFRLRAKLEHYNGTKKI 325
L + F +IF++R K+E + ++
Sbjct: 537 KLGEVTFKSFIFKIRTKMETFGDENRL 563
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 83/119 (69%), Gaps = 5/119 (4%)
Query: 671 SVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGD 730
+V+ I + R N YK+CPS++C KKVIDQ NGMYRCEKCNKEF F YRL+ + + D
Sbjct: 439 TVKATINLLRTENILYKSCPSENCKKKVIDQANGMYRCEKCNKEFPNFKYRLLGSLSLAD 498
Query: 731 WTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPA----LKKALFTQYIFRLRAKLEHY 784
WT+++WVT F +E E ILG+TAQE+GE E D+ A L + F +IF++R K+E +
Sbjct: 499 WTDNMWVTAFNDETEKILGITAQELGELKENDNDAYLEKLGEVTFKSFIFKIRTKMETF 557
>gi|367023819|ref|XP_003661194.1| hypothetical protein MYCTH_2300304 [Myceliophthora thermophila ATCC
42464]
gi|347008462|gb|AEO55949.1| hypothetical protein MYCTH_2300304 [Myceliophthora thermophila ATCC
42464]
Length = 614
Score = 295 bits (755), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 192/530 (36%), Positives = 277/530 (52%), Gaps = 95/530 (17%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGF-- 393
MLATQ N ++ DG L + +IV++K+Y + S +S+LIIL+L+++ T +G
Sbjct: 65 MLATQANRVVHDGLLQKGSIVRVKQY-----QAQSVKGKSILIILDLDVM---THLGTPD 116
Query: 394 KIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQ------------ 441
KIG+P+ + S QQ G G + + P VQ
Sbjct: 117 KIGDPKLMEAA---PSEQQQNTTIGGAGFYGGAKSEPAAVHETKPQVQRQVASRTGGGGG 173
Query: 442 --------THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRA 493
+PI ++SPY NKWTIK RVT+K+ IR W+ GKLFS++LLDESGEIRA
Sbjct: 174 SGGHAASTIYPIEAISPYANKWTIKVRVTSKSDIRTWHKTHSEGKLFSVNLLDESGEIRA 233
Query: 494 TMFNDECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEV 552
T FN E ++F+D++++ VYYIS C ++ A K+FS++ NDYE+ S TVI +D+
Sbjct: 234 TAFNQEVDQFYDLLQEGSVYYISTPCKVQLAKKQFSNLANDYELML-ESGTVIERADDQ- 291
Query: 553 GNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS 612
++P V++ F ++ + + D +DV+GV + EL +T KT QK Y KR++TLVD +
Sbjct: 292 SSVPQVRFNFCTIQELQGVEKDATVDVIGVLKEVNELEQITSKTTQKPYDKRELTLVDDT 351
Query: 613 QASVTMTLWGKEAETFDASNKPVIAVKAARVS---------------------------- 644
SV +T+WGK A FDAS + VIA K RVS
Sbjct: 352 GYSVRVTIWGKTAREFDASPESVIACKGTRVSDFGGRSLSLLSSGTMAIDPDIPEAHKLK 411
Query: 645 ---EFQG----------------------NLLLMREIQDQQLGMGDKADYCSVRGIIQVF 679
E QG + + +I+++ LG+ DK DY +V+G I
Sbjct: 412 GWYEAQGRNNTFATHSNLSSVGAATGRKDDAKWIAQIKNENLGV-DKTDYFTVKGTIVHM 470
Query: 680 RGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTL 739
R N Y ACPS+ CNKKV D +G +RCEKCN + YR I+ V I D T +VW++
Sbjct: 471 RQENFAYPACPSESCNKKVTDMGDGTWRCEKCNITHDRPQYRYIMSVCISDHTGNVWISC 530
Query: 740 FQNEAESILGVTAQEVGESTEDHPALKKALFT-----QYIFRLRAKLEHY 784
F +A I+G TA E+ E E A +A F + FR RAK+E +
Sbjct: 531 FDEQARLIMGKTADEMMELREQDQAAFEAAFDAANCRKMSFRCRAKMETF 580
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 133/321 (41%), Positives = 191/321 (59%), Gaps = 11/321 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ NDYE+ S TVI +D+ ++P V++ F ++ + + D +DV+GV
Sbjct: 264 AKKQFSNLANDYELML-ESGTVIERADDQ-SSVPQVRFNFCTIQELQGVEKDATVDVIGV 321
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ EL +T KT QK Y KR++TLVD + SV +T+WGK A FDAS + VIA K R
Sbjct: 322 LKEVNELEQITSKTTQKPYDKRELTLVDDTGYSVRVTIWGKTAREFDASPESVIACKGTR 381
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTG-GMGGGAAG 183
VS+F GG++LSL S ++++PDIPE HKL+GW+ Q N F S + G G
Sbjct: 382 VSDF-GGRSLSLLSSGTMAIDPDIPEAHKLKGWYEAQGRNNTFATHSNLSSVGAATGRKD 440
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ + +I+++ LG+ DK DY +V+G I R N Y ACPS+ CNKKV D +G +RC
Sbjct: 441 DAKWIAQIKNENLGV-DKTDYFTVKGTIVHMRQENFAYPACPSESCNKKVTDMGDGTWRC 499
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
EKCN + YR I+ V I D T +VW++ F +A I+G TA E+ E E A +A
Sbjct: 500 EKCNITHDRPQYRYIMSVCISDHTGNVWISCFDEQARLIMGKTADEMMELREQDQAAFEA 559
Query: 304 LFT-----QYIFRLRAKLEHY 319
F + FR RAK+E +
Sbjct: 560 AFDAANCRKMSFRCRAKMETF 580
>gi|407928380|gb|EKG21239.1| Nucleic acid binding OB-fold tRNA/helicase-type [Macrophomina
phaseolina MS6]
Length = 616
Score = 295 bits (755), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 169/522 (32%), Positives = 273/522 (52%), Gaps = 80/522 (15%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
+ML+ Q N++IT+G L + +++++K Y + R + ++L+L+++ E+ K
Sbjct: 60 SMLSQQKNNLITEGLLKKGSMIRMKSY-----NPQVIKERKIFVVLDLDVLSEYGELE-K 113
Query: 395 IGNPQPLNTNTDNSSTQ-------QTPAATNTNGSNGVHNNVAIPRQASAP--------V 439
IGNP L N + + PA G G V + ++ P +
Sbjct: 114 IGNPVGLEANNAGPKVEPKAEPKTEQPADIGGGGFYGSKPPVKREQHSTLPSRNAPPPGL 173
Query: 440 VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE 499
Q PI +LSPY +KWTIKAR +K+ I+ W+N G GKLFS++LLDESGEIRAT F ++
Sbjct: 174 AQLFPIEALSPYTHKWTIKARCVHKSDIKTWHNKNGEGKLFSVNLLDESGEIRATGFKEQ 233
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK 559
C++ +D + VYYISNC++K A K+FS++NNDYE++F + + V P D+ ++P V+
Sbjct: 234 CDQLYDTFREGGVYYISNCSVKLAKKQFSNVNNDYELTFQNDSIVEPA--DDPDSVPQVR 291
Query: 560 YCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
Y F + + + P+ ID +GV D E+S + KT K Y KR++T+VD S SV +T
Sbjct: 292 YNFTHIGDLQNVEPNTTIDTIGVLKDVGEVSEIISKTTSKPYQKRELTIVDDSMTSVRLT 351
Query: 620 LWGKEAETFDASNKPVIAVKAARVSEF-------------------------------QG 648
+WG A+ FDAS + V+A K +VS+F QG
Sbjct: 352 IWGPTAQGFDASPESVVAFKGVKVSDFGGRSLSLLSSGSMNINPDIDEAHKLKGWYDAQG 411
Query: 649 -------------------NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKAC 689
+ ++ D+Q+GM D+ +Y ++ I + N Y AC
Sbjct: 412 RNDQFTSHQQSSTGTSRSRKYKTIAQVNDEQIGMSDQPEYFDLKATIVYVKHDNFAYPAC 471
Query: 690 PSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILG 749
S CNKKV++ N G +RCEKC+ YR I+ + D T +W++ F + + I+G
Sbjct: 472 ASAGCNKKVVEINPGEWRCEKCDITHTKPEYRYIMSCNVSDHTGQLWLSCFDDSGKIIMG 531
Query: 750 VTAQEVGE--STEDHPALKKALFTQ-----YIFRLRAKLEHY 784
+A E+ E E++P+ + F +IF ++AK++ +
Sbjct: 532 KSADELVEIRDNEENPSKFEQSFVDATCKTFIFNVKAKMDTF 573
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 114/328 (34%), Positives = 189/328 (57%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++NNDYE++F + + V P D+ ++P V+Y F + + + P+ ID +GV
Sbjct: 257 AKKQFSNVNNDYELTFQNDSIVEPA--DDPDSVPQVRYNFTHIGDLQNVEPNTTIDTIGV 314
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D E+S + KT K Y KR++T+VD S SV +T+WG A+ FDAS + V+A K +
Sbjct: 315 LKDVGEVSEIISKTTSKPYQKRELTIVDDSMTSVRLTIWGPTAQGFDASPESVVAFKGVK 374
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAGN 184
VS+F G++LSL S +++NPDI E HKL+GW+ Q N +F S + G +
Sbjct: 375 VSDFG-GRSLSLLSSGSMNINPDIDEAHKLKGWYDAQGRNDQF--TSHQQSSTGTSRSRK 431
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ ++ D+Q+GM D+ +Y ++ I + N Y AC S CNKKV++ N G +RCE
Sbjct: 432 YKTIAQVNDEQIGMSDQPEYFDLKATIVYVKHDNFAYPACASAGCNKKVVEINPGEWRCE 491
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE--STEDHPALKK 302
KC+ YR I+ + D T +W++ F + + I+G +A E+ E E++P+ +
Sbjct: 492 KCDITHTKPEYRYIMSCNVSDHTGQLWLSCFDDSGKIIMGKSADELVEIRDNEENPSKFE 551
Query: 303 ALFTQ-----YIFRLRAKLEHYNGTKKI 325
F +IF ++AK++ + +++
Sbjct: 552 QSFVDATCKTFIFNVKAKMDTFQDQQRV 579
>gi|326435434|gb|EGD81004.1| hypothetical protein PTSG_10947 [Salpingoeca sp. ATCC 50818]
Length = 601
Score = 294 bits (753), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 185/530 (34%), Positives = 273/530 (51%), Gaps = 79/530 (14%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DG N ++ AMLATQLN +I + + + +++K+++ + V +R+++I+L+ +
Sbjct: 48 ISDGTNKHNSAMLATQLNPMIVNEEVVKNGAIRLKKFMANTVQ-----DRTIIIVLQAEV 102
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQT-------PAA-TNTNGSNGVHNNVAIPRQAS 436
+ ++G IG+P L + PAA T A+P A+
Sbjct: 103 V--AKDLGSVIGDPVGLGEKRKPAPAPAPSAATASRPAAPVKTENPYKSPPKPAMPSMAA 160
Query: 437 APVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMF 496
A PI+SL PY ++WTI+ARV +K+ +R WNN RGSG+LFS+DL+D+SGEIRAT F
Sbjct: 161 ASSGAYSPIMSLHPYLHRWTIRARVASKSNVRTWNNQRGSGRLFSVDLIDDSGEIRATGF 220
Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTV-IPCNEDEVGNM 555
ND C+ H + E K Y I +KPANK+F+ +NN+YEM F T V + + D V +
Sbjct: 221 NDVCDSLHPVFEVGKCYVIQGGKIKPANKRFNQLNNEYEMQFESDTRVTLDMSADNV--I 278
Query: 556 PSVKYCFVPLKTI--AEISPDENI--DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ 611
P K+ F + + +S + N+ DVL VC + ++ K + KRDITL+D+
Sbjct: 279 PQQKFDFKSFRELENTPVSRESNVFADVLAVCHSINDADTIITKATGRELTKRDITLLDR 338
Query: 612 SQASVTMTLWGKEAETFDASN---KPVIAVKAARVSEFQGNLL----------------- 651
S+T TLWG++AE F+ + V+A+KAARVS++ G L
Sbjct: 339 DGLSMTCTLWGQDAEDFEKNGGVVGAVLAIKAARVSDYNGRSLSVSQSSTMYINPDNDEA 398
Query: 652 -------------------------------LMREIQDQQLGMGD-KADYCSVRGIIQVF 679
L+ +I+D Q+GM D K +Y +
Sbjct: 399 HSLKGWYDMEGATVEAKPLTVRNAGGNTTRILLSQIKDDQIGMIDGKPEYFMAVATVTYI 458
Query: 680 RGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTL 739
+ N Y+ACPS CNKKVI+ YRCEKCNK + F +RL+ + I D T WVT
Sbjct: 459 KKDNCMYRACPSDSCNKKVIENGPEEYRCEKCNKSYPNFKWRLMTSMSIADATGQTWVTA 518
Query: 740 FQNEAESILGVTAQEVGESTE-DHPALKK----ALFTQYIFRLRAKLEHY 784
FQ AE +L T+QE+G E D A K A F + F+ RAK + Y
Sbjct: 519 FQESAEKLLDSTSQELGHLMENDEAAFSKKIADAQFRTWRFKCRAKADTY 568
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 128/338 (37%), Positives = 189/338 (55%), Gaps = 26/338 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTV-IPCNEDEVGNMPSVKYCFVPLKTI--AEISPDENI- 60
PANK+F+ +NN+YEM F T V + + D V +P K+ F + + +S + N+
Sbjct: 246 PANKRFNQLNNEYEMQFESDTRVTLDMSADNV--IPQQKFDFKSFRELENTPVSRESNVF 303
Query: 61 -DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNK--- 116
DVL VC + ++ K + KRDITL+D+ S+T TLWG++AE F+ +
Sbjct: 304 ADVLAVCHSINDADTIITKATGRELTKRDITLLDRDGLSMTCTLWGQDAEDFEKNGGVVG 363
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTG 175
V+A+KAARVS++ G ++LS+S SS + +NPD E H L+GW+ + T +P++ R
Sbjct: 364 AVLAIKAARVSDYNG-RSLSVSQSSTMYINPDNDEAHSLKGWYDMEGATVEAKPLTVRNA 422
Query: 176 GMGGGAAGNL--LLMREIQDQQLGMGD-KADYCSVRGIIQVFRGSNTTYKACPSQDCNKK 232
G GN +L+ +I+D Q+GM D K +Y + + N Y+ACPS CNKK
Sbjct: 423 G------GNTTRILLSQIKDDQIGMIDGKPEYFMAVATVTYIKKDNCMYRACPSDSCNKK 476
Query: 233 VIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE 292
VI+ YRCEKCNK + F +RL+ + I D T WVT FQ AE +L T+QE+G
Sbjct: 477 VIENGPEEYRCEKCNKSYPNFKWRLMTSMSIADATGQTWVTAFQESAEKLLDSTSQELGH 536
Query: 293 STE-DHPALKK----ALFTQYIFRLRAKLEHYNGTKKI 325
E D A K A F + F+ RAK + Y ++
Sbjct: 537 LMENDEAAFSKKIADAQFRTWRFKCRAKADTYQDDTRV 574
>gi|62751648|ref|NP_001015732.1| replication protein A 70 kDa DNA-binding subunit [Xenopus
(Silurana) tropicalis]
gi|82194954|sp|Q5FW17.1|RFA1_XENTR RecName: Full=Replication protein A 70 kDa DNA-binding subunit;
Short=RP-A p70; AltName: Full=Replication factor A
protein 1; Short=RF-A protein 1
gi|58477644|gb|AAH89665.1| MGC107891 protein [Xenopus (Silurana) tropicalis]
gi|89269807|emb|CAJ81527.1| replication protein A1 [Xenopus (Silurana) tropicalis]
gi|115312915|gb|AAI23969.1| MGC107891 protein [Xenopus (Silurana) tropicalis]
gi|213624489|gb|AAI71175.1| MGC107891 protein [Xenopus (Silurana) tropicalis]
gi|213625713|gb|AAI71177.1| MGC107891 protein [Xenopus (Silurana) tropicalis]
Length = 609
Score = 292 bits (747), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 188/538 (34%), Positives = 265/538 (49%), Gaps = 87/538 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ + L+ I Q+ R+IV+ + G R V+I++E+ +
Sbjct: 46 MSDGLNTLSSFMLATQLNFLVDNNLLATNCICQVSRFIVNNLKDG----RRVIIVMEMEV 101
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQT------------------PAATNTNGSN--G 424
+K + KIGNP P N P + N S G
Sbjct: 102 LKSADLVKGKIGNPHPYNDGQGPPQPAAPAPASAPPPSKPQNISAPPPPSMNRGASKLFG 161
Query: 425 VHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDL 484
+ V P + + VV PI SL+PYQ+KWT++ARVTNK IR W+N+RG GKLFSI++
Sbjct: 162 GGSVVNTPGGSQSKVV---PIASLNPYQSKWTVRARVTNKGQIRTWSNSRGEGKLFSIEM 218
Query: 485 LDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTV 544
+DESGEIRAT FN++ ++F +IE +KVYY S TLK ANK+++S+ NDYEM+F T+V
Sbjct: 219 VDESGEIRATAFNEQADKFFSLIEVNKVYYFSKGTLKIANKQYTSVKNDYEMTFNSETSV 278
Query: 545 ----------------IPCNEDEVGNMPSVKYCFVPLKTIAEIS-----------PDENI 577
+P E E N +V K E++ NI
Sbjct: 279 IPCDDSADVPMVQFEFVPIGELESKNKDTVLDIIGICKNAEEVTKVTIRSNNREVSKRNI 338
Query: 578 DVLG-------------------------VCIDAAELSSVTGKTNQKTYMKRDITLVDQS 612
+++ V I A LS G++ + D
Sbjct: 339 NLMDSSGKVVSTTLWGEDADKFDGSRQPVVAIKGARLSDFGGRSLSVLSSSTVMINPDIP 398
Query: 613 QASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSV 672
+A + E + + ++ + +LL E++ + LG G+KADY +
Sbjct: 399 EAFKLRAWFDSEGQVVEGTSISESRGGTGGGNTNWKSLL---EVKTENLGHGEKADYFTS 455
Query: 673 RGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWT 732
I R N Y+ACPSQDCNKKVIDQ NG++RCEKC+KEF + YRLIL I D+
Sbjct: 456 VATIVYLRKENCLYQACPSQDCNKKVIDQQNGLFRCEKCDKEFPNYKYRLILSANIADFG 515
Query: 733 NSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYN 785
+ W+T FQ AESILG A +GE E + + A F Y FR+R KLE YN
Sbjct: 516 ENQWITCFQESAESILGQNATYLGELKEKNEQAYDEVFQNANFRSYTFRIRVKLETYN 573
Score = 269 bits (687), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 142/325 (43%), Positives = 205/325 (63%), Gaps = 8/325 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+++S+ NDYEM+F T+VIPC D+ ++P V++ FVP+ + + D +D++G+
Sbjct: 257 ANKQYTSVKNDYEMTFNSETSVIPC--DDSADVPMVQFEFVPIGELESKNKDTVLDIIGI 314
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C +A E++ VT ++N + KR+I L+D S V+ TLWG++A+ FD S +PV+A+K AR
Sbjct: 315 CKNAEEVTKVTIRSNNREVSKRNINLMDSSGKVVSTTLWGEDADKFDGSRQPVVAIKGAR 374
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
+S+F GG++LS+ SS + +NPDIPE KL+ WF ++ + G GG N
Sbjct: 375 LSDF-GGRSLSVLSSSTVMINPDIPEAFKLRAWFDSEGQVVEGTSISESRGGTGGGNTNW 433
Query: 186 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 245
+ E++ + LG G+KADY + I R N Y+ACPSQDCNKKVIDQ NG++RCEK
Sbjct: 434 KSLLEVKTENLGHGEKADYFTSVATIVYLRKENCLYQACPSQDCNKKVIDQQNGLFRCEK 493
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PAL 300
C+KEF + YRLIL I D+ + W+T FQ AESILG A +GE E +
Sbjct: 494 CDKEFPNYKYRLILSANIADFGENQWITCFQESAESILGQNATYLGELKEKNEQAYDEVF 553
Query: 301 KKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F Y FR+R KLE YN +I
Sbjct: 554 QNANFRSYTFRIRVKLETYNDESRI 578
>gi|425772845|gb|EKV11231.1| hypothetical protein PDIP_56740 [Penicillium digitatum Pd1]
gi|425773582|gb|EKV11927.1| hypothetical protein PDIG_47360 [Penicillium digitatum PHI26]
Length = 1107
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 174/521 (33%), Positives = 270/521 (51%), Gaps = 81/521 (15%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLATQ N ++TDG+L + + V++K + S S + +LIIL L ++K E KI
Sbjct: 62 MLATQANSVVTDGSLRKGSFVRLKSF-----QSNSVKGKKILIILNLEVLKELGE-AEKI 115
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGVH--------NNVAIPRQASAPVVQTH---- 443
G P+PL + Q P ++NG G N+ A P AS H
Sbjct: 116 GEPKPLEVKAEEEEVGQ-PTTISSNGFYGSKTGGAQAQPNSRAQPMSASMSTSSAHATIY 174
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI ++SPY NKWTIKAR T+K+ I+ W+N G GKLFS++LLD+SGEIR T FND+C+
Sbjct: 175 PIEAISPYSNKWTIKARCTSKSSIKTWHNKNGEGKLFSVNLLDDSGEIRGTGFNDQCDML 234
Query: 504 HDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
+++ ++ VYYIS+ C ++ A K+F+++NNDYE++F T V E ++P +++ F
Sbjct: 235 YELFQEGSVYYISSPCRVQIAKKQFTNLNNDYELTFERDTIVEKAEEQ--NDVPQIRFNF 292
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
+ + + D DV+GV D E S +T K+ K Y KR++TLVD + SV +T+WG
Sbjct: 293 TTVADLQTVEKDTTTDVIGVLKDVGETSQITSKSTGKPYDKRELTLVDNTGFSVRLTIWG 352
Query: 623 KEAETFDASNKPVIAVKAARVSEFQ------------------GNLLLMREIQDQQ---- 660
A F + + V+A K +VS+F G +R D Q
Sbjct: 353 ASANNFSVAPESVVAFKGVKVSDFGGRSLSLLSSGSMTVDPDIGEAHRLRGWYDAQGRSE 412
Query: 661 -------------------------------LGMGDKADYCSVRG-IIQVFRGSNTTYKA 688
LGM + DY S++ +I + + S Y A
Sbjct: 413 NFTSHASLSNATNSTGKTDRFKTVAQVREEQLGMSETPDYFSLKATVIYIKQDSTWCYPA 472
Query: 689 CPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL 748
C S++CNKKV + + G +RCE C+K YR I+P+ + D T +W++ F + +I+
Sbjct: 473 CLSENCNKKVTELDPGQWRCEMCDKTHLKPEYRFIMPISVSDHTGQLWLSCFDDTGRNIM 532
Query: 749 GVTAQEVGESTEDHPALKKALF-----TQYIFRLRAKLEHY 784
G++A E+ + ED P+ +F + FR RAK++++
Sbjct: 533 GMSADELMQLREDDPSAFGEVFQGANCQTWSFRCRAKIDNF 573
Score = 196 bits (499), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 114/353 (32%), Positives = 199/353 (56%), Gaps = 18/353 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+F+++NNDYE++F T V E ++P +++ F + + + D DV+GV
Sbjct: 255 AKKQFTNLNNDYELTFERDTIVEKAEEQ--NDVPQIRFNFTTVADLQTVEKDTTTDVIGV 312
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D E S +T K+ K Y KR++TLVD + SV +T+WG A F + + V+A K +
Sbjct: 313 LKDVGETSQITSKSTGKPYDKRELTLVDNTGFSVRLTIWGASANNFSVAPESVVAFKGVK 372
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTN----TRFEPVSQRTGGMGGGA 181
VS+F G++LSL S ++++PDI E H+L+GW+ Q T +S T G
Sbjct: 373 VSDFG-GRSLSLLSSGSMTVDPDIGEAHRLRGWYDAQGRSENFTSHASLSNATNST--GK 429
Query: 182 AGNLLLMREIQDQQLGMGDKADYCSVRG-IIQVFRGSNTTYKACPSQDCNKKVIDQNNGM 240
+ +++++QLGM + DY S++ +I + + S Y AC S++CNKKV + + G
Sbjct: 430 TDRFKTVAQVREEQLGMSETPDYFSLKATVIYIKQDSTWCYPACLSENCNKKVTELDPGQ 489
Query: 241 YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPAL 300
+RCE C+K YR I+P+ + D T +W++ F + +I+G++A E+ + ED P+
Sbjct: 490 WRCEMCDKTHLKPEYRFIMPISVSDHTGQLWLSCFDDTGRNIMGMSADELMQLREDDPSA 549
Query: 301 KKALF-----TQYIFRLRAKLEHYNGTKKIPDGVNIN---SFAMLATQLNDII 345
+F + FR RAK++++ +++ V+ + +++ A++L DII
Sbjct: 550 FGEVFQGANCQTWSFRCRAKIDNFGDQQRVRYQVSSSQAINYSDEASRLADII 602
>gi|336367309|gb|EGN95654.1| hypothetical protein SERLA73DRAFT_186799 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380027|gb|EGO21181.1| hypothetical protein SERLADRAFT_476039 [Serpula lacrymans var.
lacrymans S7.9]
Length = 601
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 184/534 (34%), Positives = 263/534 (49%), Gaps = 94/534 (17%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DGV+ AMLATQLN ++ D + + T+ I+ ++ ++ ++IIL+L +
Sbjct: 55 ISDGVHFVQ-AMLATQLNRLVYDNEIGKNTVA-----IIDKLTCNFVQDKRLIIILDLRV 108
Query: 385 IKPGTEIGFKIGNP-QPLNT-NTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQT 442
+ + KIGNP P+N ++ S P A+ +N S IP+ P Q
Sbjct: 109 VSTNED---KIGNPISPVNLPASEQVSASPVPEASTSNAS--------IPQTKPQPSRQN 157
Query: 443 -----------HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEI 491
+PI LSPYQN WTIKARVT K+ IR W+N RG GKLF++ L+DESGEI
Sbjct: 158 QAAKGGRQNSIYPIEGLSPYQNNWTIKARVTQKSEIRTWSNQRGEGKLFNVTLMDESGEI 217
Query: 492 RATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDE 551
RAT FN + ++ +E+ KVY IS + A KKFS++ NDYE+S T V C E
Sbjct: 218 RATGFNAVVDELYEKLEEGKVYLISKARVNLAKKKFSNVQNDYELSLEKHTEVEECL--E 275
Query: 552 VGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ 611
+P +KY F+ L + D DV + + L + KTN +T KR++T+VD+
Sbjct: 276 TSGLPMIKYNFISLSELEAQPKDSTCDVAAIVKEVGPLGEIVSKTN-RTIPKRELTIVDK 334
Query: 612 SQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM------------------ 653
S SV +TLWGK+AE +++ PVIA K +V +F G L M
Sbjct: 335 SGFSVRLTLWGKQAEQYNSEGHPVIAFKGVKVGDFGGRSLSMISTSMMSIDPDIDESHLL 394
Query: 654 ----------------------------------REIQD---QQLGMGDKADYCSVRGII 676
R + D QLGM DK D+ S R I
Sbjct: 395 RGWYDSIGVEQAFQSHSNANSSMGMSTVFNRSEMRHLSDVKESQLGMSDKTDFFSCRSTI 454
Query: 677 QVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW 736
+G N +Y ACP+Q CNKKV D +G +RCEKC K F +R I+ + + DW+ W
Sbjct: 455 MHIKGENISYPACPTQGCNKKVTDIGDG-WRCEKCEKTFERPEHRYIISLAVADWSTQAW 513
Query: 737 VTLFQNEAESILGVTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKLEHYN 785
+ F + ++ G +A ++ E E A + KA + F RAK + YN
Sbjct: 514 LQGFNDAGVAVFGKSADDLMEIKERDEAEYNTVMAKASGATFNFTCRAKQDTYN 567
Score = 222 bits (565), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 123/333 (36%), Positives = 181/333 (54%), Gaps = 14/333 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A KKFS++ NDYE+S T V C E +P +KY F+ L + D DV +
Sbjct: 249 AKKKFSNVQNDYELSLEKHTEVEECLE--TSGLPMIKYNFISLSELEAQPKDSTCDVAAI 306
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ L + KTN +T KR++T+VD+S SV +TLWGK+AE +++ PVIA K +
Sbjct: 307 VKEVGPLGEIVSKTN-RTIPKRELTIVDKSGFSVRLTLWGKQAEQYNSEGHPVIAFKGVK 365
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGGGAAGN 184
V +F GG++LS+ +S++S++PDI E H L+GW+ S F+ S MG N
Sbjct: 366 VGDF-GGRSLSMISTSMMSIDPDIDESHLLRGWYDSIGVEQAFQSHSNANSSMGMSTVFN 424
Query: 185 LLLMREIQD---QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMY 241
MR + D QLGM DK D+ S R I +G N +Y ACP+Q CNKKV D +G +
Sbjct: 425 RSEMRHLSDVKESQLGMSDKTDFFSCRSTIMHIKGENISYPACPTQGCNKKVTDIGDG-W 483
Query: 242 RCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-- 299
RCEKC K F +R I+ + + DW+ W+ F + ++ G +A ++ E E A
Sbjct: 484 RCEKCEKTFERPEHRYIISLAVADWSTQAWLQGFNDAGVAVFGKSADDLMEIKERDEAEY 543
Query: 300 ---LKKALFTQYIFRLRAKLEHYNGTKKIPDGV 329
+ KA + F RAK + YN ++ G+
Sbjct: 544 NTVMAKASGATFNFTCRAKQDTYNDQTRVRYGI 576
>gi|116179976|ref|XP_001219837.1| hypothetical protein CHGG_00616 [Chaetomium globosum CBS 148.51]
gi|88184913|gb|EAQ92381.1| hypothetical protein CHGG_00616 [Chaetomium globosum CBS 148.51]
Length = 586
Score = 288 bits (738), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 185/528 (35%), Positives = 277/528 (52%), Gaps = 90/528 (17%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGF-- 393
MLATQ N ++ DG L +IV++K+Y + + V+IIL+L ++ TE+G
Sbjct: 65 MLATQANHVMHDGQLQRGSIVRVKQYQAQYLK-----GKHVMIILDLEVM---TELGTPD 116
Query: 394 KIGNPQPL--------NTNTDNSS---TQQTPAATNT-----NGSNGVHNNVAIPRQASA 437
KIG+P+ + NT +D++S Q PAA T + + S
Sbjct: 117 KIGDPKSMEVTTGERQNTTSDSASFYGAQSEPAAQTTPQFQPQAQRQLASRTGGGGGNSG 176
Query: 438 PVVQT-HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMF 496
P+ T +PI ++SPY NKWTIKARVT K+ I W GKLFS++ LDESGEIRAT F
Sbjct: 177 PLAATIYPIEAVSPYVNKWTIKARVTTKSYIGTWKRPTSEGKLFSVNFLDESGEIRATAF 236
Query: 497 NDECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNM 555
N E ++F+D++++ VYYIS C ++ A K+FS++ NDYE+ F H T VI ED+ ++
Sbjct: 237 NTEVDQFYDLLQEGSVYYISTPCKVQMAKKQFSNVANDYEIMFQHDT-VIEKAEDQ-SSV 294
Query: 556 PSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQAS 615
P V++ F ++ + E+ D IDV+GV D + + KT QK Y KR++TLVD + S
Sbjct: 295 PQVRFNFCTIQELQEVEKDATIDVIGVLKDVGKQEEIQSKTTQKGYDKRELTLVDDTGYS 354
Query: 616 VTMTLWGKEAETFDASNKPVIAVKAARVSEF----------------------------- 646
V +T+WGK A FDAS + V+A K RVS+F
Sbjct: 355 VRVTIWGKAAAEFDASLESVVAFKGMRVSDFGGRSLSLLSSGTMAIDPDIPEAHKLKGWY 414
Query: 647 ----QGN---------------------LLLMREIQDQQLGMGDKADYCSVRGIIQVFRG 681
+GN + ++ +I+ + +GM D A Y +++G I R
Sbjct: 415 DAQGRGNTTFATHSHLSSIGAAAGQKDEMKMIAQIKSENIGMEDTA-YFTIKGTIVHLRQ 473
Query: 682 SNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQ 741
N Y AC S++C+KKV + +RCE+CN + YR I+ + D T WV+ F
Sbjct: 474 ENFAYPACISENCSKKVTPSMDDKWRCERCNITHDRAQYRYIMSADVSDHTGHTWVSCFD 533
Query: 742 NEAESILGVTAQEVGE--STED---HPALKKALFTQYIFRLRAKLEHY 784
+ A I+G +A E+ E + ED A + A + +FR RAK++ Y
Sbjct: 534 DSARIIMGKSADEMMELKNREDGSCAEAFEAANCRKMVFRCRAKMDTY 581
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 189/327 (57%), Gaps = 12/327 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ NDYE+ F H T VI ED+ ++P V++ F ++ + E+ D IDV+GV
Sbjct: 264 AKKQFSNVANDYEIMFQHDT-VIEKAEDQ-SSVPQVRFNFCTIQELQEVEKDATIDVIGV 321
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D + + KT QK Y KR++TLVD + SV +T+WGK A FDAS + V+A K R
Sbjct: 322 LKDVGKQEEIQSKTTQKGYDKRELTLVDDTGYSVRVTIWGKAAAEFDASLESVVAFKGMR 381
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ--TNTRFEPVSQRTG-GMGGGAA 182
VS+F GG++LSL S ++++PDIPE HKL+GW+ Q NT F S + G G
Sbjct: 382 VSDF-GGRSLSLLSSGTMAIDPDIPEAHKLKGWYDAQGRGNTTFATHSHLSSIGAAAGQK 440
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
+ ++ +I+ + +GM D A Y +++G I R N Y AC S++C+KKV + +R
Sbjct: 441 DEMKMIAQIKSENIGMEDTA-YFTIKGTIVHLRQENFAYPACISENCSKKVTPSMDDKWR 499
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE--STED---H 297
CE+CN + YR I+ + D T WV+ F + A I+G +A E+ E + ED
Sbjct: 500 CERCNITHDRAQYRYIMSADVSDHTGHTWVSCFDDSARIIMGKSADEMMELKNREDGSCA 559
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKK 324
A + A + +FR RAK++ Y K
Sbjct: 560 EAFEAANCRKMVFRCRAKMDTYGDQPK 586
>gi|430814436|emb|CCJ28324.1| unnamed protein product [Pneumocystis jirovecii]
Length = 513
Score = 288 bits (737), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 153/408 (37%), Positives = 224/408 (54%), Gaps = 57/408 (13%)
Query: 433 RQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIR 492
R +S +PI SLSPYQN+WTIKARVT+KT I+ W+N +G GKLFS +DESGEIR
Sbjct: 77 RISSVSSATIYPIESLSPYQNRWTIKARVTSKTEIKHWHNQKGEGKLFSCVFMDESGEIR 136
Query: 493 ATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEV 552
AT FND+ + +D++++ +VY+IS C + A K+FS++ N+YE++F T V C +
Sbjct: 137 ATAFNDQVDMLYDVLQEGQVYFISKCRVNIAKKQFSNVQNEYELTFERDTEVEKCPDQ-- 194
Query: 553 GNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK-TYMKRDITLVDQ 611
+P K+ FV LK + + D IDV+G+ + E +T +T QK Y KRDI +VD
Sbjct: 195 STVPQAKFNFVFLKDLDNVEKDSIIDVIGILKEVHESVEITSRTTQKFVYSKRDIFIVDS 254
Query: 612 SQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL-------------------- 651
S SV +TLWGK A F+ + V+A K +VSEF G L
Sbjct: 255 SNYSVRLTLWGKHALDFNIPQETVVAFKGLKVSEFNGRSLSLLNSGMVIANPQIEEAYSL 314
Query: 652 -----------------------------LMREIQDQQLGMGDKADYCSVRGIIQVFRGS 682
+ +I+D+QLGM ++ DY S++ I F+
Sbjct: 315 KKWYDKQGKEESFATHQSIVTAIRKEERKTIAQIKDEQLGMAEQPDYFSIKATIVFFKQE 374
Query: 683 NTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQN 742
N Y ACP+ CNKKVI+ N G +RCEKC+K F YR IL + + D T +W++ F +
Sbjct: 375 NAFYPACPTAGCNKKVIEDNEGGWRCEKCDKSFPAPQYRYILTISVNDHTGQIWLSCFDD 434
Query: 743 EAESILGVTAQEVGESTEDHPALKKALFTQ-----YIFRLRAKLEHYN 785
I+G +A ++ + E++ +F + Y+FR+RAK + YN
Sbjct: 435 VGRLIIGKSADDIVQMREENEQAALNIFHEANCKSYVFRVRAKQDSYN 482
Score = 219 bits (557), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 124/349 (35%), Positives = 190/349 (54%), Gaps = 14/349 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ N+YE++F T V C + +P K+ FV LK + + D IDV+G+
Sbjct: 167 AKKQFSNVQNEYELTFERDTEVEKCPDQ--STVPQAKFNFVFLKDLDNVEKDSIIDVIGI 224
Query: 66 CIDAAELSSVTGKTNQK-TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+ E +T +T QK Y KRDI +VD S SV +TLWGK A F+ + V+A K
Sbjct: 225 LKEVHESVEITSRTTQKFVYSKRDIFIVDSSNYSVRLTLWGKHALDFNIPQETVVAFKGL 284
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGN 184
+VSEF G++LSL S ++ NP I E + L+ W+ Q E + +
Sbjct: 285 KVSEF-NGRSLSLLNSGMVIANPQIEEAYSLKKWYDKQGKE--ESFATHQSIVTAIRKEE 341
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ +I+D+QLGM ++ DY S++ I F+ N Y ACP+ CNKKVI+ N G +RCE
Sbjct: 342 RKTIAQIKDEQLGMAEQPDYFSIKATIVFFKQENAFYPACPTAGCNKKVIEDNEGGWRCE 401
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKAL 304
KC+K F YR IL + + D T +W++ F + I+G +A ++ + E++ +
Sbjct: 402 KCDKSFPAPQYRYILTISVNDHTGQIWLSCFDDVGRLIIGKSADDIVQMREENEQAALNI 461
Query: 305 FTQ-----YIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQ---LNDII 345
F + Y+FR+RAK + YNG ++ V SF A + L +II
Sbjct: 462 FHEANCKSYVFRVRAKQDSYNGAVRVRYQVMSASFINWAHECKLLTEII 510
>gi|145234512|ref|XP_001400627.1| replication factor A protein 1 [Aspergillus niger CBS 513.88]
gi|134057574|emb|CAK37984.1| unnamed protein product [Aspergillus niger]
Length = 606
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 174/523 (33%), Positives = 284/523 (54%), Gaps = 83/523 (15%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLATQLN +++ L + V++K + + S + +LIIL+L +++ G KI
Sbjct: 62 MLATQLNPMVSSKLLRKGCFVRLKSF-----QANSVKGKKILIILDLEVLE-GLGEAEKI 115
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNG-------VHNNVAIPRQASAPVVQ-TH---- 443
G+P+PL + TD Q P ++NG G V +N + Q++ PV+ TH
Sbjct: 116 GDPKPLESKTDEDEKHQ-PTTISSNGFYGSKISGAQVQSNTGV--QSARPVLAATHATIY 172
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI ++SPY +KWTIKAR T+KT IR W+N G+LFS++LLD+SGEIRAT FND+C+
Sbjct: 173 PIEAISPYSHKWTIKARCTSKTNIRTWHNRNTEGRLFSVNLLDDSGEIRATGFNDQCDML 232
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+D+ ++ VYYISNC ++ A K+F+++NNDYE++F T V+ ED+ ++P V++ F
Sbjct: 233 YDVFQEGGVYYISNCRVQIAKKQFTNLNNDYELTFERDT-VVEKAEDQT-DVPQVRFNFT 290
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
+ + + D IDV+GV +A +++ +T KT K Y KR++ +VD + SV +T+WG
Sbjct: 291 SIGDLQSVEKDTTIDVIGVLKEAMDVTQITSKTTNKPYDKRELIMVDNTGFSVRLTIWGS 350
Query: 624 EAETFDASNKPVIAVKA--------------------------------------ARVSE 645
A+ F+AS + VIA K R
Sbjct: 351 TAQKFNASPESVIAFKGVKVSDFGGRSLSLLSSGSMAVDPDIEEAHKLKGWYDAQGRDEN 410
Query: 646 FQGNLLLM---------------REIQDQQLGMGDKADYCSVRGIIQVFRGSNTT--YKA 688
F + L+ +I+++QLGM ++A Y S++ + + N + Y A
Sbjct: 411 FSSHASLLGTASSTMKSDQFKTIAQIREEQLGMSEEAVYFSLKATVIYIKQDNMSFAYPA 470
Query: 689 CPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL 748
C S+ CNKKV + + G +RCE+C+K YR I+ V + D T +W++ F + S++
Sbjct: 471 CLSEGCNKKVTELDPGQWRCERCDKTHPQPDYRYIMHVNVSDHTGQLWLSCFDDVGRSMM 530
Query: 749 GVTAQEVGE--STEDHPA---LKKALFTQYIFRLRAKLEHYNK 786
++A ++ E T++ A + A + FR RAK++H+ +
Sbjct: 531 DISANQLMELFQTDEKAAGDVFQDANCRTWNFRCRAKIDHFGE 573
Score = 193 bits (491), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 121/361 (33%), Positives = 209/361 (57%), Gaps = 21/361 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+F+++NNDYE++F T V+ ED+ ++P V++ F + + + D IDV+GV
Sbjct: 252 AKKQFTNLNNDYELTFERDT-VVEKAEDQT-DVPQVRFNFTSIGDLQSVEKDTTIDVIGV 309
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+A +++ +T KT K Y KR++ +VD + SV +T+WG A+ F+AS + VIA K +
Sbjct: 310 LKEAMDVTQITSKTTNKPYDKRELIMVDNTGFSVRLTIWGSTAQKFNASPESVIAFKGVK 369
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGA---- 181
VS+F G++LSL S ++++PDI E HKL+GW+ Q R E S +G +
Sbjct: 370 VSDFG-GRSLSLLSSGSMAVDPDIEEAHKLKGWYDAQ--GRDENFSSHASLLGTASSTMK 426
Query: 182 AGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT--YKACPSQDCNKKVIDQNNG 239
+ + +I+++QLGM ++A Y S++ + + N + Y AC S+ CNKKV + + G
Sbjct: 427 SDQFKTIAQIREEQLGMSEEAVYFSLKATVIYIKQDNMSFAYPACLSEGCNKKVTELDPG 486
Query: 240 MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE--STEDH 297
+RCE+C+K YR I+ V + D T +W++ F + S++ ++A ++ E T++
Sbjct: 487 QWRCERCDKTHPQPDYRYIMHVNVSDHTGQLWLSCFDDVGRSMMDISANQLMELFQTDEK 546
Query: 298 PA---LKKALFTQYIFRLRAKLEHYNGTKKIPDGVN----INSFAMLATQLNDIITDGTL 350
A + A + FR RAK++H+ ++I V+ IN ++ A +L D+I T+
Sbjct: 547 AAGDVFQDANCRTWNFRCRAKIDHFGEQQRIRYQVSSAKPIN-YSHEAGRLADLIGSYTV 605
Query: 351 S 351
S
Sbjct: 606 S 606
>gi|350635289|gb|EHA23651.1| hypothetical protein ASPNIDRAFT_174835 [Aspergillus niger ATCC
1015]
Length = 592
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 174/523 (33%), Positives = 284/523 (54%), Gaps = 83/523 (15%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLATQLN +++ L + V++K + + S + +LIIL+L +++ G KI
Sbjct: 48 MLATQLNPMVSSKLLRKGCFVRLKSF-----QANSVKGKKILIILDLEVLE-GLGEAEKI 101
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNG-------VHNNVAIPRQASAPVVQ-TH---- 443
G+P+PL + TD Q P ++NG G V +N + Q++ PV+ TH
Sbjct: 102 GDPKPLESKTDEDEKHQ-PTTISSNGFYGSKISGAQVQSNTGV--QSARPVLAATHATIY 158
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI ++SPY +KWTIKAR T+KT IR W+N G+LFS++LLD+SGEIRAT FND+C+
Sbjct: 159 PIEAISPYSHKWTIKARCTSKTNIRTWHNRNTEGRLFSVNLLDDSGEIRATGFNDQCDML 218
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+D+ ++ VYYISNC ++ A K+F+++NNDYE++F T V+ ED+ ++P V++ F
Sbjct: 219 YDVFQEGGVYYISNCRVQIAKKQFTNLNNDYELTFERDT-VVEKAEDQT-DVPQVRFNFT 276
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
+ + + D IDV+GV +A +++ +T KT K Y KR++ +VD + SV +T+WG
Sbjct: 277 SIGDLQSVEKDTTIDVIGVLKEAMDVTQITSKTTNKPYDKRELIMVDNTGFSVRLTIWGS 336
Query: 624 EAETFDASNKPVIAVKA--------------------------------------ARVSE 645
A+ F+AS + VIA K R
Sbjct: 337 TAQKFNASPESVIAFKGVKVSDFGGRSLSLLSSGSMAVDPDIEEAHKLKGWYDAQGRDEN 396
Query: 646 FQGNLLLM---------------REIQDQQLGMGDKADYCSVRGIIQVFRGSNTT--YKA 688
F + L+ +I+++QLGM ++A Y S++ + + N + Y A
Sbjct: 397 FSSHASLLGTASSTMKSDQFKTIAQIREEQLGMSEEAVYFSLKATVIYIKQDNMSFAYPA 456
Query: 689 CPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL 748
C S+ CNKKV + + G +RCE+C+K YR I+ V + D T +W++ F + S++
Sbjct: 457 CLSEGCNKKVTELDPGQWRCERCDKTHPQPDYRYIMHVNVSDHTGQLWLSCFDDVGRSMM 516
Query: 749 GVTAQEVGE--STEDHPA---LKKALFTQYIFRLRAKLEHYNK 786
++A ++ E T++ A + A + FR RAK++H+ +
Sbjct: 517 DISANQLMELFQTDEKAAGDVFQDANCRTWNFRCRAKIDHFGE 559
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 121/361 (33%), Positives = 209/361 (57%), Gaps = 21/361 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+F+++NNDYE++F T V+ ED+ ++P V++ F + + + D IDV+GV
Sbjct: 238 AKKQFTNLNNDYELTFERDT-VVEKAEDQT-DVPQVRFNFTSIGDLQSVEKDTTIDVIGV 295
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+A +++ +T KT K Y KR++ +VD + SV +T+WG A+ F+AS + VIA K +
Sbjct: 296 LKEAMDVTQITSKTTNKPYDKRELIMVDNTGFSVRLTIWGSTAQKFNASPESVIAFKGVK 355
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGA---- 181
VS+F G++LSL S ++++PDI E HKL+GW+ Q R E S +G +
Sbjct: 356 VSDFG-GRSLSLLSSGSMAVDPDIEEAHKLKGWYDAQ--GRDENFSSHASLLGTASSTMK 412
Query: 182 AGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT--YKACPSQDCNKKVIDQNNG 239
+ + +I+++QLGM ++A Y S++ + + N + Y AC S+ CNKKV + + G
Sbjct: 413 SDQFKTIAQIREEQLGMSEEAVYFSLKATVIYIKQDNMSFAYPACLSEGCNKKVTELDPG 472
Query: 240 MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE--STEDH 297
+RCE+C+K YR I+ V + D T +W++ F + S++ ++A ++ E T++
Sbjct: 473 QWRCERCDKTHPQPDYRYIMHVNVSDHTGQLWLSCFDDVGRSMMDISANQLMELFQTDEK 532
Query: 298 PA---LKKALFTQYIFRLRAKLEHYNGTKKIPDGVN----INSFAMLATQLNDIITDGTL 350
A + A + FR RAK++H+ ++I V+ IN ++ A +L D+I T+
Sbjct: 533 AAGDVFQDANCRTWNFRCRAKIDHFGEQQRIRYQVSSAKPIN-YSHEAGRLADLIGSYTV 591
Query: 351 S 351
S
Sbjct: 592 S 592
>gi|358053972|dbj|GAA99937.1| hypothetical protein E5Q_06640 [Mixia osmundae IAM 14324]
Length = 605
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 177/525 (33%), Positives = 260/525 (49%), Gaps = 94/525 (17%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AMLATQLN +I DG + + +V++ +Y ++ V NRS++I L + ++ T+ K
Sbjct: 64 AMLATQLNHLIGDGQIEKHAVVRLDQYAINKVQ-----NRSIVICLGIEVLGKETD---K 115
Query: 395 IGNPQ-----------------PLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASA 437
IG+P P N N S PA + N R +
Sbjct: 116 IGDPSSVEKLEKIESQAPKGVNPFN-EISNVSRASAPAKSAIASKNA--------RATNG 166
Query: 438 PVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFN 497
P +PI LSPYQNKWTIKARVT K+ IR + NA+G GK+FS++LLDESGEIRAT FN
Sbjct: 167 PNTPIYPIEGLSPYQNKWTIKARVTLKSDIRHYTNAKGDGKVFSVNLLDESGEIRATGFN 226
Query: 498 DECNRFHDMIEKDKVYYISNCTLK-PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
D + ++ E+ KVYY+S + NK+++ NN+YE+ F T V C + ++P
Sbjct: 227 DAVDNLFNVFEEGKVYYVSKARVNISKNKQYNPTNNEYEIMFERDTQVELCT--DTTDLP 284
Query: 557 SVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
VKY FV L + + IDVLGV + ELSS+ K K KR+I L+DQS+ SV
Sbjct: 285 QVKYNFVNLSDLTTQEANAMIDVLGVVKEVGELSSIVSKATSKQIPKREIVLIDQSEFSV 344
Query: 617 TMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM----------------------- 653
MTLWG++AE F A ++P+IA K +V +F G L M
Sbjct: 345 RMTLWGRQAEQFSAPDQPIIAFKGVKVGDFGGRSLSMVSSSTMAVDPDIQPAHSLSGWMK 404
Query: 654 -----------------------------REIQDQQLGMGDKADYCSVRGIIQVFRGSNT 684
+I+++ LGM D D +R I + +
Sbjct: 405 AVGETKTFQTFKSTGGGAGGFKEEEAKTIAQIKEEGLGMQDTPDNFFLRATIVYVKKDSL 464
Query: 685 TYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEA 744
+Y ACP + CNKKV + G +RCEKC+++F +R ++ + + D T +W++ F +
Sbjct: 465 SYPACPKEGCNKKVTPTSEGSFRCEKCSEDFPAPQHRYVMSLSVLDHTGQLWLSAFDDAG 524
Query: 745 ESILGVTAQEVGE-STEDHPALKKALF----TQYIFRLRAKLEHY 784
IL +A ++ ED A A++ Y F RA+ E +
Sbjct: 525 RLILDHSADDIERLRDEDEQAFVGAIWRGSGKAYNFACRARTETF 569
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 180/330 (54%), Gaps = 9/330 (2%)
Query: 7 NKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVC 66
NK+++ NN+YE+ F T V C + ++P VKY FV L + + IDVLGV
Sbjct: 254 NKQYNPTNNEYEIMFERDTQVELCTD--TTDLPQVKYNFVNLSDLTTQEANAMIDVLGVV 311
Query: 67 IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARV 126
+ ELSS+ K K KR+I L+DQS+ SV MTLWG++AE F A ++P+IA K +V
Sbjct: 312 KEVGELSSIVSKATSKQIPKREIVLIDQSEFSVRMTLWGRQAEQFSAPDQPIIAFKGVKV 371
Query: 127 SEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRTGGMGGGAAGNL 185
+F GG++LS+ SS ++++PDI H L GW T+ F+ GG GG
Sbjct: 372 GDF-GGRSLSMVSSSTMAVDPDIQPAHSLSGWMKAVGETKTFQTFKSTGGGAGGFKEEEA 430
Query: 186 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 245
+ +I+++ LGM D D +R I + + +Y ACP + CNKKV + G +RCEK
Sbjct: 431 KTIAQIKEEGLGMQDTPDNFFLRATIVYVKKDSLSYPACPKEGCNKKVTPTSEGSFRCEK 490
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-STEDHPALKKAL 304
C+++F +R ++ + + D T +W++ F + IL +A ++ ED A A+
Sbjct: 491 CSEDFPAPQHRYVMSLSVLDHTGQLWLSAFDDAGRLILDHSADDIERLRDEDEQAFVGAI 550
Query: 305 F----TQYIFRLRAKLEHYNGTKKIPDGVN 330
+ Y F RA+ E + T ++ +N
Sbjct: 551 WRGSGKAYNFACRARTETFQDTSRVRYQIN 580
>gi|195108851|ref|XP_001999006.1| GI24277 [Drosophila mojavensis]
gi|193915600|gb|EDW14467.1| GI24277 [Drosophila mojavensis]
Length = 557
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 173/510 (33%), Positives = 268/510 (52%), Gaps = 71/510 (13%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG ++ +LAT+LN + G LSE TIV++ +Y + G R +I+ E+ +
Sbjct: 33 LSDGEYYHTCVLLATELNKMQHRGLLSENTIVRLNKYSIDMAGRGGV--RPEIIVDEITV 90
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPV-VQTH 443
+ E+ KIG P +N++ Q T + +AI Q+ + +
Sbjct: 91 LNSEYEVKTKIGEP----VTYENAAKQITAPEVSA---------LAISNQSCNQINEEVI 137
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI LSPY++KW IKARV+ KT I + G+LF+++L D+SGEIR T F D+C++F
Sbjct: 138 PIAHLSPYKHKWIIKARVSGKTRIFSYK----GGRLFNMNLFDKSGEIRVTAFKDQCDKF 193
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
H +I+ VY+I+N +KPAN ++S + N++EM F T V C D+ G++P VK+ +
Sbjct: 194 HSLIDDGNVYFIANGWIKPANTQYSQLKNEFEMIFIGETMVQLC--DDNGDIPEVKFDLI 251
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELS-SVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
PL ++ + E ++ +G+C + +L ++ KTN K + KR++TLVD S A+VT+TLWG
Sbjct: 252 PLSHVSNMGNKEAVNTIGICTEVGKLDIRISTKTN-KEFKKRELTLVDMSNAAVTLTLWG 310
Query: 623 KEAETFDASNKPVIAVKAARVSEF------------------------------------ 646
EA FD + VI VK +RV+E+
Sbjct: 311 DEAVNFDGHVQSVILVKGSRVNEYGDWKSLNVGWGSTLKINPDIPEAHKLRVWFDNGGAD 370
Query: 647 ------QGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVID 700
+ L+ +++ + LG GD+ DY I+Q +N YKACP +CNKKV+D
Sbjct: 371 NIVSARRVELMTLKDAYFRNLGSGDRPDYFQCIAIVQNVIQTNAFYKACPQMNCNKKVVD 430
Query: 701 QNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE 760
+G+YRCE C+ F Y L + + I D+T+ V F E +L T QEV E+ E
Sbjct: 431 VGDGLYRCESCDAVSPNFKYILRVKIKISDYTSDREVICFGKIGEQLLRHTTQEVVEALE 490
Query: 761 DHPALKKALFTQ-----YIFRLRAKLEHYN 785
+ PA +FT YIF+L K + YN
Sbjct: 491 NDPARALQIFTDINYTLYIFKLSCKNKLYN 520
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 123/326 (37%), Positives = 182/326 (55%), Gaps = 25/326 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PAN ++S + N++EM F T V C D+ G++P VK+ +PL ++ + E ++ +G
Sbjct: 212 PANTQYSQLKNEFEMIFIGETMVQLC--DDNGDIPEVKFDLIPLSHVSNMGNKEAVNTIG 269
Query: 65 VCIDAAELS-SVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKA 123
+C + +L ++ KTN K + KR++TLVD S A+VT+TLWG EA FD + VI VK
Sbjct: 270 ICTEVGKLDIRISTKTN-KEFKKRELTLVDMSNAAVTLTLWGDEAVNFDGHVQSVILVKG 328
Query: 124 ARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAG 183
+RV+E+ K+L++ S L +NPDIPE HKL+ WF GG +
Sbjct: 329 SRVNEYGDWKSLNVGWGSTLKINPDIPEAHKLRVWFD-------------NGGADNIVSA 375
Query: 184 N---LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGM 240
L+ +++ + LG GD+ DY I+Q +N YKACP +CNKKV+D +G+
Sbjct: 376 RRVELMTLKDAYFRNLGSGDRPDYFQCIAIVQNVIQTNAFYKACPQMNCNKKVVDVGDGL 435
Query: 241 YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPAL 300
YRCE C+ F Y L + + I D+T+ V F E +L T QEV E+ E+ PA
Sbjct: 436 YRCESCDAVSPNFKYILRVKIKISDYTSDREVICFGKIGEQLLRHTTQEVVEALENDPAR 495
Query: 301 KKALFTQ-----YIFRLRAKLEHYNG 321
+FT YIF+L K + YNG
Sbjct: 496 ALQIFTDINYTLYIFKLSCKNKLYNG 521
>gi|154295413|ref|XP_001548142.1| hypothetical protein BC1G_13185 [Botryotinia fuckeliana B05.10]
Length = 595
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 172/505 (34%), Positives = 263/505 (52%), Gaps = 65/505 (12%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILE-LNIIKPGTEIGFK 394
MLATQ N +I DG L++ +++K Y + V + ++E L ++ K
Sbjct: 65 MLATQANHVIHDGKLTKGCFIRLKNYQANEVKGKRILIILDIDVIESLGTME-------K 117
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNTNGS-----NGVHNNVAIPRQASAPVVQTH----PI 445
IG P + D T + A + G+ + A+P + +H PI
Sbjct: 118 IGEPTAVKVEEDVKPTNTSIAGSGFYGNKPQPQQPAAQDRALPSRNGPSSSSSHATIYPI 177
Query: 446 VSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHD 505
SLSPY +KWTIKARVT+K+ IR W+ GKLFS++LLDESGEI+AT FN++C+ ++
Sbjct: 178 ESLSPYAHKWTIKARVTSKSDIRTWSKPNSEGKLFSVNLLDESGEIKATGFNEQCDALYE 237
Query: 506 MIEKDKVYYI-SNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP 564
++ VYYI S C ++ A K+FS+INNDYE+ F T V + + N+P V+Y F
Sbjct: 238 TFQEGSVYYITSPCRVQIAKKQFSNINNDYELMFERDTLVEKAEDQD--NVPQVRYNFSN 295
Query: 565 LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE 624
+ + I D +D++ V + E+S +T KT K Y KR++TLVD++ SV +T+WGK
Sbjct: 296 IGDLQSIEKDSTVDLIAVLKEVGEISEITSKTTSKPYSKRELTLVDETGYSVRLTIWGKT 355
Query: 625 AETFDASNKPVIAVKAARVSEF-------------------------------------- 646
A +FDAS + V+A K +VS+F
Sbjct: 356 ATSFDASPESVVAFKGVKVSDFGGRSLSLLSSGSMSFDPDIQEAHKLKGCNLASAGAAGG 415
Query: 647 -QGNLLLMREIQDQQLGMGDK-ADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNG 704
Q + + +++D+ LGM ++ DY S R I + N Y AC +++CNKKV+DQN+G
Sbjct: 416 RQDPIKTIAQVKDEGLGMSEENTDYFSSRATIVYIKQDNFCYPACLNENCNKKVVDQNDG 475
Query: 705 MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA 764
+RCEKCN+ YR IL + + D T +W+T F I+G +A E+ E E+ P
Sbjct: 476 TWRCEKCNQSHPKPEYRYILALNVNDHTGQMWLTAFDEVGRLIMGKSADELMELKENDPP 535
Query: 765 LKKALFTQ-----YIFRLRAKLEHY 784
+ +F F++R K + Y
Sbjct: 536 AMERVFEDANCKMMTFKVRCKTDTY 560
Score = 202 bits (513), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 118/326 (36%), Positives = 182/326 (55%), Gaps = 21/326 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS+INNDYE+ F T V + + N+P V+Y F + + I D +D++ V
Sbjct: 256 AKKQFSNINNDYELMFERDTLVEKAEDQD--NVPQVRYNFSNIGDLQSIEKDSTVDLIAV 313
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ E+S +T KT K Y KR++TLVD++ SV +T+WGK A +FDAS + V+A K +
Sbjct: 314 LKEVGEISEITSKTTSKPYSKRELTLVDETGYSVRLTIWGKTATSFDASPESVVAFKGVK 373
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
VS+F G++LSL S +S +PDI E HKL+G + + G GG +
Sbjct: 374 VSDFG-GRSLSLLSSGSMSFDPDIQEAHKLKG------------CNLASAGAAGGRQDPI 420
Query: 186 LLMREIQDQQLGMGDK-ADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ +++D+ LGM ++ DY S R I + N Y AC +++CNKKV+DQN+G +RCE
Sbjct: 421 KTIAQVKDEGLGMSEENTDYFSSRATIVYIKQDNFCYPACLNENCNKKVVDQNDGTWRCE 480
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKAL 304
KCN+ YR IL + + D T +W+T F I+G +A E+ E E+ P + +
Sbjct: 481 KCNQSHPKPEYRYILALNVNDHTGQMWLTAFDEVGRLIMGKSADELMELKENDPPAMERV 540
Query: 305 FTQ-----YIFRLRAKLEHYNGTKKI 325
F F++R K + Y ++
Sbjct: 541 FEDANCKMMTFKVRCKTDTYQDQARV 566
>gi|119480455|ref|XP_001260256.1| replication factor A 1, rfa1 [Neosartorya fischeri NRRL 181]
gi|119408410|gb|EAW18359.1| replication factor A 1, rfa1 [Neosartorya fischeri NRRL 181]
Length = 603
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 170/516 (32%), Positives = 272/516 (52%), Gaps = 76/516 (14%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLATQ N ++T G L + V++K + + S + +LIIL+L +++ E KI
Sbjct: 62 MLATQANPLVTSGMLKKGCFVRLKSF-----QANSVKGKKILIILDLEVLQELGE-AEKI 115
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNG--VHNNVAIPR--QASAPVVQTH----PIVS 447
G P+PL + Q P + G G V N PR A + + TH PI +
Sbjct: 116 GEPKPLENKLEEDERPQ-PTTISGGGFYGSKVQNQRGEPRVQPARSSLTSTHATIYPIEA 174
Query: 448 LSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMI 507
+SPY +KWTIKAR T+K+ I+ W+N G+LFS++LLD+SGEIRAT FN++C+ +D+
Sbjct: 175 ISPYSHKWTIKARCTSKSAIKTWHNRNSEGRLFSVNLLDDSGEIRATGFNEQCDLLYDVF 234
Query: 508 EKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLK 566
+ VYYIS+ C ++ A K+F+++NNDYE++F TV+ ED+ ++P V++ F +
Sbjct: 235 HEGSVYYISSPCRVQIAKKQFTNLNNDYELTF-EKDTVVEKAEDQ-SDVPQVRFNFTTVG 292
Query: 567 TIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE 626
+ + D ID++GV D E + + KT K Y KR++TLVD S SV +T+WG A
Sbjct: 293 DLQSVEKDTTIDIIGVLKDVGETTQIVSKTTSKPYDKRELTLVDSSGFSVRLTIWGSTAL 352
Query: 627 TFDASNKPVIAVKAARVSEF-------------------------------QG------- 648
F+A+ + VIA K +VS+F QG
Sbjct: 353 NFNATPESVIAFKGVKVSDFGGRSLSLLSSGSMTVDPDIEEAHRLKGWYDAQGRHETFTS 412
Query: 649 ---------------NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD 693
+L + +I+++QLGM + A Y S++G + + N Y AC S+
Sbjct: 413 HATMSNASSSAMRLDHLKTIAQIREEQLGMSEDAVYFSLKGTVIYIKQDNMCYPACLSEG 472
Query: 694 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 753
CNKKV + + G +RCE C+K YR I+ + + D T +W++ F + ++G +A
Sbjct: 473 CNKKVTELDPGQWRCESCDKTHPRPEYRYIMLINVSDHTGQLWLSCFDEVGKQLMGTSAD 532
Query: 754 EVGESTEDHPALKKALFTQ-----YIFRLRAKLEHY 784
++ + ++ +F + + FR RAKL+H+
Sbjct: 533 QLMDLRQNGEKAAGDIFQEANCRTWNFRCRAKLDHF 568
Score = 193 bits (491), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 187/329 (56%), Gaps = 14/329 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+F+++NNDYE++F TV+ ED+ ++P V++ F + + + D ID++GV
Sbjct: 251 AKKQFTNLNNDYELTF-EKDTVVEKAEDQ-SDVPQVRFNFTTVGDLQSVEKDTTIDIIGV 308
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D E + + KT K Y KR++TLVD S SV +T+WG A F+A+ + VIA K +
Sbjct: 309 LKDVGETTQIVSKTTSKPYDKRELTLVDSSGFSVRLTIWGSTALNFNATPESVIAFKGVK 368
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAG-- 183
VS+F G++LSL S ++++PDI E H+L+GW+ Q R E + ++
Sbjct: 369 VSDFG-GRSLSLLSSGSMTVDPDIEEAHRLKGWYDAQ--GRHETFTSHATMSNASSSAMR 425
Query: 184 --NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMY 241
+L + +I+++QLGM + A Y S++G + + N Y AC S+ CNKKV + + G +
Sbjct: 426 LDHLKTIAQIREEQLGMSEDAVYFSLKGTVIYIKQDNMCYPACLSEGCNKKVTELDPGQW 485
Query: 242 RCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALK 301
RCE C+K YR I+ + + D T +W++ F + ++G +A ++ + ++
Sbjct: 486 RCESCDKTHPRPEYRYIMLINVSDHTGQLWLSCFDEVGKQLMGTSADQLMDLRQNGEKAA 545
Query: 302 KALFTQ-----YIFRLRAKLEHYNGTKKI 325
+F + + FR RAKL+H+ ++I
Sbjct: 546 GDIFQEANCRTWNFRCRAKLDHFGDQQRI 574
>gi|358367561|dbj|GAA84179.1| replication factor A 1, Rfa1 [Aspergillus kawachii IFO 4308]
Length = 606
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 170/523 (32%), Positives = 281/523 (53%), Gaps = 83/523 (15%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLATQLN +++ L + V++K + + S + +LIIL+L +++ G + KI
Sbjct: 62 MLATQLNPMVSSELLRKGCFVRLKSF-----QANSVKGKKILIILDLEVLE-GLGVAEKI 115
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNG-------VHNNVAIPRQASAPVVQT-----H 443
G P+PL + TD Q P ++NG G V +N + Q++ PV+ +
Sbjct: 116 GEPKPLESKTDEDDKHQ-PTTISSNGFYGSKMSGAQVQSNTGV--QSARPVLAAAHATIY 172
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI ++SPY +KWTIKAR T+KT I+ W+N G+LFS++LLD+SGEIRAT FND+C+
Sbjct: 173 PIEAISPYSHKWTIKARCTSKTNIKTWHNRNTEGRLFSVNLLDDSGEIRATGFNDQCDML 232
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+D+ ++ VYYISNC ++ A K+F+++NNDYE++F T V+ ED+ ++P V++ F
Sbjct: 233 YDVFQEGGVYYISNCRVQIAKKQFTNLNNDYELTFERDT-VVEKAEDQ-SDVPQVRFNFT 290
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
+ + + D IDV+GV + +S +T KT K Y KR++ +VD + SV +T+WG
Sbjct: 291 SIGDLQSVEKDTTIDVIGVLKEDMGVSQITSKTTNKPYNKRELVMVDNTGFSVRLTIWGT 350
Query: 624 EAETFDASNKPVIAVKA--------------------------------------ARVSE 645
A+ F+A + VIA K R
Sbjct: 351 TAQNFNALPESVIAFKGVKVSDFGGRSLSLLSSGSMAVDPDIEEAHKLKGWYDAQGRAEN 410
Query: 646 FQGNLLLM---------------REIQDQQLGMGDKADYCSVRGIIQVFRGSNTT--YKA 688
F + L+ +I+++QLGM ++A Y S++ + + N + Y A
Sbjct: 411 FSSHASLLGAASSTMKSDQFKTIAQIREEQLGMSEEAVYFSLKATVIYIKQDNMSFAYPA 470
Query: 689 CPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL 748
C S+ CNKKV + + G +RCE+C+K YR I+ V + D T +W++ F + +S++
Sbjct: 471 CLSEKCNKKVTELDPGQWRCERCDKTHPRPDYRYIMHVNVSDHTGQLWLSCFDDVGKSMM 530
Query: 749 GVTAQEVGE--STEDHP---ALKKALFTQYIFRLRAKLEHYNK 786
++A ++ E T++ A + A + FR RAK++H+ +
Sbjct: 531 DMSANQLMELFQTDEKAAGDAFQDANCRTWNFRCRAKIDHFGE 573
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/354 (33%), Positives = 204/354 (57%), Gaps = 19/354 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+F+++NNDYE++F T V+ ED+ ++P V++ F + + + D IDV+GV
Sbjct: 252 AKKQFTNLNNDYELTFERDT-VVEKAEDQ-SDVPQVRFNFTSIGDLQSVEKDTTIDVIGV 309
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ +S +T KT K Y KR++ +VD + SV +T+WG A+ F+A + VIA K +
Sbjct: 310 LKEDMGVSQITSKTTNKPYNKRELVMVDNTGFSVRLTIWGTTAQNFNALPESVIAFKGVK 369
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGA---- 181
VS+F G++LSL S ++++PDI E HKL+GW+ Q R E S +G +
Sbjct: 370 VSDFG-GRSLSLLSSGSMAVDPDIEEAHKLKGWYDAQ--GRAENFSSHASLLGAASSTMK 426
Query: 182 AGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT--YKACPSQDCNKKVIDQNNG 239
+ + +I+++QLGM ++A Y S++ + + N + Y AC S+ CNKKV + + G
Sbjct: 427 SDQFKTIAQIREEQLGMSEEAVYFSLKATVIYIKQDNMSFAYPACLSEKCNKKVTELDPG 486
Query: 240 MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE--STEDH 297
+RCE+C+K YR I+ V + D T +W++ F + +S++ ++A ++ E T++
Sbjct: 487 QWRCERCDKTHPRPDYRYIMHVNVSDHTGQLWLSCFDDVGKSMMDMSANQLMELFQTDEK 546
Query: 298 P---ALKKALFTQYIFRLRAKLEHYNGTKKIPDGV---NINSFAMLATQLNDII 345
A + A + FR RAK++H+ ++I V N +++ A++L D+I
Sbjct: 547 AAGDAFQDANCRTWNFRCRAKIDHFGEQQRIRYQVSSANPINYSQEASRLADLI 600
>gi|67900872|ref|XP_680692.1| hypothetical protein AN7423.2 [Aspergillus nidulans FGSC A4]
gi|40742813|gb|EAA62003.1| hypothetical protein AN7423.2 [Aspergillus nidulans FGSC A4]
Length = 606
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 169/518 (32%), Positives = 272/518 (52%), Gaps = 79/518 (15%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLA Q N +TDG L + V++K++ + S + +LI+L+L ++K E K+
Sbjct: 64 MLAIQANHFVTDGLLRKGCFVRLKQF-----QANSVKGKKILIVLDLEVLKELGE-AEKL 117
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAI-----------PRQASAPVVQTHP 444
G P+PL + + Q P ++NG G A P Q SAP +P
Sbjct: 118 GEPKPLESKAEEEEKPQ-PTTISSNGFYGAKAQNAPSQISSRAQHTRPMQGSAPAT-IYP 175
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
I ++SPY +KWTIKAR T+K+PI+ ++ G G LFS++LLD+SGEIRAT FN++C+ +
Sbjct: 176 IEAISPYAHKWTIKARCTSKSPIKTFHGRSGDGTLFSVNLLDDSGEIRATGFNEQCSALY 235
Query: 505 DMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
D+ ++ +VYYIS+ C ++ A K+F+++NNDYE++F T V +E ++P V++ F
Sbjct: 236 DLFQEGEVYYISSPCRVQIAKKQFTNLNNDYELTFERDTLVE--KAEEQNDVPQVRFNFT 293
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
+ + + D IDV+GV D E + + KT +K Y KR++TLVD + SV +T+WG
Sbjct: 294 TIGDLQSVEKDTTIDVIGVLKDVGETTQIVSKTTKKPYDKRELTLVDNTGFSVRLTIWGT 353
Query: 624 EAETFDASNKPVIAVKAARVSEF-------------------------------QG---- 648
A F AS + V+A K +VS+F QG
Sbjct: 354 TAMNFAASPESVVAFKGVKVSDFGGKSLSLLSSGSVTVDPDIEEAHRLKGWYDAQGRNEN 413
Query: 649 -----------------NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS 691
L + +++++QLGM ++ Y ++R + + N Y AC S
Sbjct: 414 FASHASSVGTMSATKRDQLKTIAQVREEQLGMSEEPSYFTLRATVVYIKQDNLCYPACLS 473
Query: 692 QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVT 751
+ CNKKV + + G +RCE+C+K YR I+ V + D T +++ F + +LG++
Sbjct: 474 EGCNKKVTEVDPGQWRCERCDKTHPRAEYRYIMLVNVSDHTGQLYLNCFDDVGRLLLGMS 533
Query: 752 AQEVGESTE-DHPAL----KKALFTQYIFRLRAKLEHY 784
A ++ E + D AL + A + F RAK++HY
Sbjct: 534 ANQLMELPQNDGKALGNVIQNATCRTWTFGCRAKIDHY 571
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 118/355 (33%), Positives = 196/355 (55%), Gaps = 12/355 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+F+++NNDYE++F T V +E ++P V++ F + + + D IDV+GV
Sbjct: 255 AKKQFTNLNNDYELTFERDTLVE--KAEEQNDVPQVRFNFTTIGDLQSVEKDTTIDVIGV 312
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D E + + KT +K Y KR++TLVD + SV +T+WG A F AS + V+A K +
Sbjct: 313 LKDVGETTQIVSKTTKKPYDKRELTLVDNTGFSVRLTIWGTTAMNFAASPESVVAFKGVK 372
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAGN 184
VS+F G LS SV +++PDI E H+L+GW+ Q N F + G M
Sbjct: 373 VSDFGGKSLSLLSSGSV-TVDPDIEEAHRLKGWYDAQGRNENFASHASSVGTMSATKRDQ 431
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
L + +++++QLGM ++ Y ++R + + N Y AC S+ CNKKV + + G +RCE
Sbjct: 432 LKTIAQVREEQLGMSEEPSYFTLRATVVYIKQDNLCYPACLSEGCNKKVTEVDPGQWRCE 491
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPAL--- 300
+C+K YR I+ V + D T +++ F + +LG++A ++ E + D AL
Sbjct: 492 RCDKTHPRAEYRYIMLVNVSDHTGQLYLNCFDDVGRLLLGMSANQLMELPQNDGKALGNV 551
Query: 301 -KKALFTQYIFRLRAKLEHYNGTKKIPDGVNIN---SFAMLATQLNDIITDGTLS 351
+ A + F RAK++HY ++I V+ +++ A++L DII ++S
Sbjct: 552 IQNATCRTWTFGCRAKIDHYGDQQRIRYQVSYAKPVNYSEEASRLADIIDSYSIS 606
>gi|259483725|tpe|CBF79351.1| TPA: subunit of heterotrimeric Replication Factor (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 603
Score = 282 bits (722), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 169/518 (32%), Positives = 272/518 (52%), Gaps = 79/518 (15%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLA Q N +TDG L + V++K++ + S + +LI+L+L ++K E K+
Sbjct: 61 MLAIQANHFVTDGLLRKGCFVRLKQF-----QANSVKGKKILIVLDLEVLKELGE-AEKL 114
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAI-----------PRQASAPVVQTHP 444
G P+PL + + Q P ++NG G A P Q SAP +P
Sbjct: 115 GEPKPLESKAEEEEKPQ-PTTISSNGFYGAKAQNAPSQISSRAQHTRPMQGSAPAT-IYP 172
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
I ++SPY +KWTIKAR T+K+PI+ ++ G G LFS++LLD+SGEIRAT FN++C+ +
Sbjct: 173 IEAISPYAHKWTIKARCTSKSPIKTFHGRSGDGTLFSVNLLDDSGEIRATGFNEQCSALY 232
Query: 505 DMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
D+ ++ +VYYIS+ C ++ A K+F+++NNDYE++F T V +E ++P V++ F
Sbjct: 233 DLFQEGEVYYISSPCRVQIAKKQFTNLNNDYELTFERDTLVE--KAEEQNDVPQVRFNFT 290
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
+ + + D IDV+GV D E + + KT +K Y KR++TLVD + SV +T+WG
Sbjct: 291 TIGDLQSVEKDTTIDVIGVLKDVGETTQIVSKTTKKPYDKRELTLVDNTGFSVRLTIWGT 350
Query: 624 EAETFDASNKPVIAVKAARVSEF-------------------------------QG---- 648
A F AS + V+A K +VS+F QG
Sbjct: 351 TAMNFAASPESVVAFKGVKVSDFGGKSLSLLSSGSVTVDPDIEEAHRLKGWYDAQGRNEN 410
Query: 649 -----------------NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS 691
L + +++++QLGM ++ Y ++R + + N Y AC S
Sbjct: 411 FASHASSVGTMSATKRDQLKTIAQVREEQLGMSEEPSYFTLRATVVYIKQDNLCYPACLS 470
Query: 692 QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVT 751
+ CNKKV + + G +RCE+C+K YR I+ V + D T +++ F + +LG++
Sbjct: 471 EGCNKKVTEVDPGQWRCERCDKTHPRAEYRYIMLVNVSDHTGQLYLNCFDDVGRLLLGMS 530
Query: 752 AQEVGESTE-DHPAL----KKALFTQYIFRLRAKLEHY 784
A ++ E + D AL + A + F RAK++HY
Sbjct: 531 ANQLMELPQNDGKALGNVIQNATCRTWTFGCRAKIDHY 568
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 118/355 (33%), Positives = 196/355 (55%), Gaps = 12/355 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+F+++NNDYE++F T V +E ++P V++ F + + + D IDV+GV
Sbjct: 252 AKKQFTNLNNDYELTFERDTLVE--KAEEQNDVPQVRFNFTTIGDLQSVEKDTTIDVIGV 309
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D E + + KT +K Y KR++TLVD + SV +T+WG A F AS + V+A K +
Sbjct: 310 LKDVGETTQIVSKTTKKPYDKRELTLVDNTGFSVRLTIWGTTAMNFAASPESVVAFKGVK 369
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAGN 184
VS+F G LS SV +++PDI E H+L+GW+ Q N F + G M
Sbjct: 370 VSDFGGKSLSLLSSGSV-TVDPDIEEAHRLKGWYDAQGRNENFASHASSVGTMSATKRDQ 428
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
L + +++++QLGM ++ Y ++R + + N Y AC S+ CNKKV + + G +RCE
Sbjct: 429 LKTIAQVREEQLGMSEEPSYFTLRATVVYIKQDNLCYPACLSEGCNKKVTEVDPGQWRCE 488
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPAL--- 300
+C+K YR I+ V + D T +++ F + +LG++A ++ E + D AL
Sbjct: 489 RCDKTHPRAEYRYIMLVNVSDHTGQLYLNCFDDVGRLLLGMSANQLMELPQNDGKALGNV 548
Query: 301 -KKALFTQYIFRLRAKLEHYNGTKKIPDGVNIN---SFAMLATQLNDIITDGTLS 351
+ A + F RAK++HY ++I V+ +++ A++L DII ++S
Sbjct: 549 IQNATCRTWTFGCRAKIDHYGDQQRIRYQVSYAKPVNYSEEASRLADIIDSYSIS 603
>gi|440637381|gb|ELR07300.1| hypothetical protein GMDG_02480 [Geomyces destructans 20631-21]
Length = 608
Score = 282 bits (721), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 162/519 (31%), Positives = 269/519 (51%), Gaps = 78/519 (15%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
+MLAT N I D L + ++V++K++ + + + +L+I++++++ E K
Sbjct: 65 SMLATGANHFIHDQKLKKGSLVRLKQF-----QANALKGKRILVIMDIDVLAEFGEPD-K 118
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVV----------QTHP 444
IG+PQ L + + P A + G G + P Q S P +P
Sbjct: 119 IGDPQALKVKDEEEDVKPAPGAVSGAGFYG-NKPAQQPAQQSLPSRTGPSSSAGQGNIYP 177
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
I +LSPY +KWTIKARV+NK+ IR W+ G GKLFS++LLDESGEI+AT FN++C++ +
Sbjct: 178 IETLSPYAHKWTIKARVSNKSEIRTWHKQSGEGKLFSVNLLDESGEIKATGFNEQCDQLY 237
Query: 505 DMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
D+ ++ VYYIS+ C ++ A K+F+++ NDYE++F T V + E N+P V++ F
Sbjct: 238 DLFQEGSVYYISSPCRVQLAKKQFTNLPNDYELTFDRETKVEKAEDQE--NVPQVRFNFT 295
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
+ ++ + D IDV+GV + A+++ + K+ K Y KR++TLVD S SV +T+WGK
Sbjct: 296 DIASLQTVEKDTTIDVIGVLKEVADVTQIVSKSTSKPYDKRELTLVDDSDFSVRLTIWGK 355
Query: 624 EAETFDASNKPVIAVKAARVSEF------------------------------------- 646
A +FDA + ++A K A+VS+F
Sbjct: 356 TAVSFDAQPESIVAFKGAKVSDFGGRSLSLLSSGSMTVDPDIQEAHKLRGWYDTHGRSNT 415
Query: 647 ----------------QGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP 690
Q ++ + ++ + LGM + DY S + I + N Y AC
Sbjct: 416 FASHSGMASAGAAGGRQDPVMTVAKVYEDSLGMSESTDYFSTKATIVYIKQENFAYPACL 475
Query: 691 SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGV 750
S+ CNKKV D +G +RCEKC+ YR I+ + + D T +W++ F + I+G+
Sbjct: 476 SEGCNKKVTDMGDGTWRCEKCDITHPKPEYRYIMSLNVNDHTGQLWLSCFDDVGRLIMGM 535
Query: 751 TAQEV-----GESTEDHPALKKALFTQYIFRLRAKLEHY 784
+A ++ E A ++A +F+ RAK++ +
Sbjct: 536 SADQLMALKDSEDPAAGRAFEEANCKTMLFKCRAKMDSF 574
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 114/350 (32%), Positives = 196/350 (56%), Gaps = 13/350 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+F+++ NDYE++F T V + E N+P V++ F + ++ + D IDV+GV
Sbjct: 257 AKKQFTNLPNDYELTFDRETKVEKAEDQE--NVPQVRFNFTDIASLQTVEKDTTIDVIGV 314
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ A+++ + K+ K Y KR++TLVD S SV +T+WGK A +FDA + ++A K A+
Sbjct: 315 LKEVADVTQIVSKSTSKPYDKRELTLVDDSDFSVRLTIWGKTAVSFDAQPESIVAFKGAK 374
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST--QTNTRFEPVSQRTGGMGGGAAG 183
VS+F G++LSL S ++++PDI E HKL+GW+ T ++NT + G GG
Sbjct: 375 VSDFG-GRSLSLLSSGSMTVDPDIQEAHKLRGWYDTHGRSNTFASHSGMASAGAAGGRQD 433
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
++ + ++ + LGM + DY S + I + N Y AC S+ CNKKV D +G +RC
Sbjct: 434 PVMTVAKVYEDSLGMSESTDYFSTKATIVYIKQENFAYPACLSEGCNKKVTDMGDGTWRC 493
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-----GESTEDHP 298
EKC+ YR I+ + + D T +W++ F + I+G++A ++ E
Sbjct: 494 EKCDITHPKPEYRYIMSLNVNDHTGQLWLSCFDDVGRLIMGMSADQLMALKDSEDPAAGR 553
Query: 299 ALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINS---FAMLATQLNDII 345
A ++A +F+ RAK++ + +++ V S ++ A +L ++I
Sbjct: 554 AFEEANCKTMLFKCRAKMDSFQDQQRVRYQVTAASPVNYSQEAQKLAELI 603
>gi|395333749|gb|EJF66126.1| replication factor-a protein [Dichomitus squalens LYAD-421 SS1]
Length = 601
Score = 281 bits (719), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 174/515 (33%), Positives = 265/515 (51%), Gaps = 76/515 (14%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
+MLATQ+N I+ + +++ TI I+++ V+ V + +LIIL L ++ E K
Sbjct: 64 SMLATQMNYIVEEDQIAKGTIATIEKFSVNLVQ-----GKRLLIILALKVLVKHAE---K 115
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQAS-----APVVQTHPIVSLS 449
IG+P+ L ++ + P + S RQ + +PI SLS
Sbjct: 116 IGSPKALQPRGEDGAPASAPVTPGPSTSTTPAAAAVPARQQTQAGRGGRAAAVYPIESLS 175
Query: 450 PYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEK 509
PYQ WTIKARVTNK+ IR W+N RG GKLFS+ L+DESGEIRAT FN + +D ++
Sbjct: 176 PYQTHWTIKARVTNKSDIRTWSNQRGEGKLFSVTLMDESGEIRATAFNAAVDELYDRLQD 235
Query: 510 DKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIA 569
KVY IS + A KKFS++NN+YE++F ST V C+ + ++P+VK+ F+ + ++
Sbjct: 236 GKVYLISKAKVNLAKKKFSNVNNEYELTFERSTEVEECH--DATDVPTVKFNFINISSLQ 293
Query: 570 EISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD 629
+++ D DV+GV D +ELSS+T K K KR++T+VD+S SV MTLWGK+AE +D
Sbjct: 294 DVAKDSTCDVIGVVKDVSELSSITSKATSKI-PKRELTIVDRSGYSVRMTLWGKQAEQYD 352
Query: 630 ASNKPVIAVKAARVSEFQGNLLLMREIQ-----------------------DQQL----- 661
++ PVIA K A+V +FQG L M DQQ
Sbjct: 353 ENDHPVIAFKGAKVGDFQGRSLSMMSSSTMHVNPDIPEAHALRGWYDAAGADQQFQSHTV 412
Query: 662 ----GMGDKADYCSVRGI----------------------IQVFRGSNTTYKACPSQDCN 695
G G D +R + I + N +Y ACP+ C
Sbjct: 413 TMVSGGGITFDRAEIRNLNDVKVSELGMFDKPDNFCARATIMHIKSDNISYPACPTTGCG 472
Query: 696 KKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 755
KKV+ Q +RCEKC+K F +R ++ + + D++ W F + +++ G+TA E+
Sbjct: 473 KKVL-QMGESWRCEKCDKSFPKPEHRYMVAMAVSDYSGQAWFQGFNDVGQTVFGMTADEL 531
Query: 756 -----GESTEDHPALKKALFTQYIFRLRAKLEHYN 785
E + + + ++ + F RAK + YN
Sbjct: 532 VEIKDREELQYNTVINASIGKTFNFTCRAKQDTYN 566
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 119/333 (35%), Positives = 192/333 (57%), Gaps = 13/333 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A KKFS++NN+YE++F ST V C++ ++P+VK+ F+ + ++ +++ D DV+GV
Sbjct: 249 AKKKFSNVNNEYELTFERSTEVEECHD--ATDVPTVKFNFINISSLQDVAKDSTCDVIGV 306
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D +ELSS+T K K KR++T+VD+S SV MTLWGK+AE +D ++ PVIA K A+
Sbjct: 307 VKDVSELSSITSKATSKI-PKRELTIVDRSGYSVRMTLWGKQAEQYDENDHPVIAFKGAK 365
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
V +FQ G++LS+ SS + +NPDIPE H L+GW+ + T GGG +
Sbjct: 366 VGDFQ-GRSLSMMSSSTMHVNPDIPEAHALRGWYDAAGADQQFQSHTVTMVSGGGITFDR 424
Query: 186 LLMREIQD---QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
+R + D +LGM DK D R I + N +Y ACP+ C KKV+ Q +R
Sbjct: 425 AEIRNLNDVKVSELGMFDKPDNFCARATIMHIKSDNISYPACPTTGCGKKVL-QMGESWR 483
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-----GESTEDH 297
CEKC+K F +R ++ + + D++ W F + +++ G+TA E+ E + +
Sbjct: 484 CEKCDKSFPKPEHRYMVAMAVSDYSGQAWFQGFNDVGQTVFGMTADELVEIKDREELQYN 543
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKIPDGVN 330
+ ++ + F RAK + YN ++ G++
Sbjct: 544 TVINASIGKTFNFTCRAKQDTYNDQTRVRYGIS 576
>gi|396498991|ref|XP_003845364.1| similar to replication protein A 70 kDa DNA-binding subunit
[Leptosphaeria maculans JN3]
gi|312221945|emb|CBY01885.1| similar to replication protein A 70 kDa DNA-binding subunit
[Leptosphaeria maculans JN3]
Length = 611
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 173/523 (33%), Positives = 272/523 (52%), Gaps = 89/523 (17%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
M+AT NDI+T G L + +IV++ +Y V ++++LII+EL ++ E+ KI
Sbjct: 62 MIATTANDIVTSGQLKKGSIVRLLKYNPQRVK-----DKNILIIMELEVLSEYGELE-KI 115
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQA---SAPVVQT---------- 442
G P+ L T D PAA + G+N N A QA S PV Q+
Sbjct: 116 GQPEALETRADTQ-----PAAIS--GNNFYGNKPAPAAQAPQRSLPVHQSNPGTSSHPHL 168
Query: 443 HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNR 502
+PI SLSPY +KWTI+AR T+K+ ++EW+NA+GSGKLFS++LLD++GEIRAT F + ++
Sbjct: 169 YPIESLSPYAHKWTIRARCTSKSDMKEWHNAKGSGKLFSVNLLDDTGEIRATAFTEVADK 228
Query: 503 FHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC 561
+ E+ VYYIS C + A K FS++ NDYE+ F T V + E N P +++
Sbjct: 229 LFPVFEEGVVYYISAPCRVTLAKKNFSNLPNDYELQFERDTEVEKAEDQE--NKPQIRFN 286
Query: 562 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
F + + + D ID +GV + E++++T K K + KR++TL D SQ SV +T+W
Sbjct: 287 FTKIGDLDSVEKDSTIDTIGVLKEVGEVATITSKNTNKDFSKRELTLADDSQTSVRLTIW 346
Query: 622 GKEAETFDASNKPVIAVKAARVSEF----------------------------------- 646
GK AE+F+A + ++A K +VS+F
Sbjct: 347 GKTAESFEAPLESILAFKGVKVSDFGGRSLSLLSSGSMMVDPDIDEAHKLRGWFNAVGQN 406
Query: 647 -----QGNLL-----------LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP 690
NL L+ +I +++ + D Y S+R + + + Y AC
Sbjct: 407 ATFSTHNNLASSSGGSKNESKLISQIMEEESYLQDTPTYLSLRASVVYVKNTTVAYPACS 466
Query: 691 SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGV 750
+ CNKKVI++N G + CEKC K + YR +L V + D T ++W++ F ++I+G+
Sbjct: 467 TPGCNKKVIEENPGAWWCEKCQKTYPEPLYRYVLSVNVADHTGTLWLSCFDEAGQTIVGM 526
Query: 751 TAQEVGESTEDHP---------ALKKALFTQYIFRLRAKLEHY 784
+A E + D A+++A + FR+R K+E Y
Sbjct: 527 SANEAMKMKTDDEDNGTQNFLTAMQEATCKTFNFRVRGKMETY 569
Score = 196 bits (497), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 114/360 (31%), Positives = 188/360 (52%), Gaps = 17/360 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K FS++ NDYE+ F T V + E N P +++ F + + + D ID +GV
Sbjct: 250 AKKNFSNLPNDYELQFERDTEVEKAEDQE--NKPQIRFNFTKIGDLDSVEKDSTIDTIGV 307
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ E++++T K K + KR++TL D SQ SV +T+WGK AE+F+A + ++A K +
Sbjct: 308 LKEVGEVATITSKNTNKDFSKRELTLADDSQTSVRLTIWGKTAESFEAPLESILAFKGVK 367
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
VS+F G LS S++ ++PDI E HKL+GWF+ GG+
Sbjct: 368 VSDFGGRSLSLLSSGSMM-VDPDIDEAHKLRGWFNAVGQNATFSTHNNLASSSGGSKNES 426
Query: 186 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 245
L+ +I +++ + D Y S+R + + + Y AC + CNKKVI++N G + CEK
Sbjct: 427 KLISQIMEEESYLQDTPTYLSLRASVVYVKNTTVAYPACSTPGCNKKVIEENPGAWWCEK 486
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP------- 298
C K + YR +L V + D T ++W++ F ++I+G++A E + D
Sbjct: 487 CQKTYPEPLYRYVLSVNVADHTGTLWLSCFDEAGQTIVGMSANEAMKMKTDDEDNGTQNF 546
Query: 299 --ALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNIN----SFAMLATQLNDIITDGTLSE 352
A+++A + FR+R K+E Y K P +N ++A A +L +I L+E
Sbjct: 547 LTAMQEATCKTFNFRVRGKMETYQDQPK-PRYQVLNLYPLNYAQEANKLAQLIKQYDLNE 605
>gi|296416099|ref|XP_002837718.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633601|emb|CAZ81909.1| unnamed protein product [Tuber melanosporum]
Length = 614
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 175/528 (33%), Positives = 267/528 (50%), Gaps = 89/528 (16%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGF- 393
+MLATQ + DG++ + VQ+ Y + V ++ +LI++ L ++ T+ G
Sbjct: 61 SMLATQATAHVLDGSIEKGCFVQLTNYQANKVK-----DKKILIVIGLEVL---TQYGKQ 112
Query: 394 -KIGNPQPLNTNTDNSSTQQTPAATNTNGS-NGVHNNVAIP----------RQA------ 435
KIG P L + + + AA N S + N P RQA
Sbjct: 113 EKIGEPVSLEASQRPQAPDRARAAQNEKASATSFYGNRPAPAPAEQRGVPARQAQPTTTA 172
Query: 436 --SAPVV---QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE 490
SAP +PI SLSPYQN+WTI+ARVT K+PI+ W N+ G+LF++ LLDESGE
Sbjct: 173 RSSAPSATRPNIYPIESLSPYQNRWTIRARVTYKSPIKLWQNSNRDGRLFNVTLLDESGE 232
Query: 491 IRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED 550
+RAT FND+ + F++++++ +VYYISNC + A K+FS+INNDYE++F +T + CN+
Sbjct: 233 VRATGFNDQVDSFYEVLQEGQVYYISNCKVNFAKKQFSNINNDYELAFERNTEIEKCNDV 292
Query: 551 EVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVD 610
+ G +P ++ FV + I D IDV+GV + E++S+ K QK+Y KRD+TLVD
Sbjct: 293 DDG-IPMARFNFVQFSELESIQNDGIIDVIGVIKEVGEVASIQSKNTQKSYTKRDVTLVD 351
Query: 611 QSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM----------------- 653
+S SV +T WGK AE ++ ++A K +VSE+ G L M
Sbjct: 352 KSGYSVHITTWGKSAEDWETQLDEIVAFKGVKVSEYGGRSLSMLHSSTMTVNPDIDESHA 411
Query: 654 ---------------------------------REIQDQQLGMGDKADYCSVRGIIQVFR 680
+I+D+ LGMG+ D + + I +
Sbjct: 412 LRGWYDGQGRGETFQSHHTGSSAVRTNDPYKTLSQIRDENLGMGEDPDIFTTKATIVYIK 471
Query: 681 GSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLF 740
N +Y AC + CNKKV++ G ++CEKC+ +R I+ + D W + F
Sbjct: 472 NENFSYPACLTPKCNKKVVEIAEGQWKCEKCDITHPNCQHRYIMTISCSDAFGLAWFSCF 531
Query: 741 QNEAESILGVTAQEVGE--STEDHPALKKALF----TQYIFRLRAKLE 782
+ I+G+TA E+ E + PA A Y+FR RAK++
Sbjct: 532 DDVGIMIMGMTADELVELNNQSGGPAFADAFLQANCKAYVFRCRAKMD 579
Score = 209 bits (531), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 115/327 (35%), Positives = 181/327 (55%), Gaps = 11/327 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS+INNDYE++F +T + CN+ + G +P ++ FV + I D IDV+GV
Sbjct: 265 AKKQFSNINNDYELAFERNTEIEKCNDVDDG-IPMARFNFVQFSELESIQNDGIIDVIGV 323
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ E++S+ K QK+Y KRD+TLVD+S SV +T WGK AE ++ ++A K +
Sbjct: 324 IKEVGEVASIQSKNTQKSYTKRDVTLVDKSGYSVHITTWGKSAEDWETQLDEIVAFKGVK 383
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRTGGMGGGAAGN 184
VSE+ GG++LS+ SS +++NPDI E H L+GW+ Q F+ S TG
Sbjct: 384 VSEY-GGRSLSMLHSSTMTVNPDIDESHALRGWYDGQGRGETFQ--SHHTGSSAVRTNDP 440
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ +I+D+ LGMG+ D + + I + N +Y AC + CNKKV++ G ++CE
Sbjct: 441 YKTLSQIRDENLGMGEDPDIFTTKATIVYIKNENFSYPACLTPKCNKKVVEIAEGQWKCE 500
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE--STEDHPALKK 302
KC+ +R I+ + D W + F + I+G+TA E+ E + PA
Sbjct: 501 KCDITHPNCQHRYIMTISCSDAFGLAWFSCFDDVGIMIMGMTADELVELNNQSGGPAFAD 560
Query: 303 ALF----TQYIFRLRAKLEHYNGTKKI 325
A Y+FR RAK++ G +++
Sbjct: 561 AFLQANCKAYVFRCRAKMDVSQGQQRV 587
>gi|351704190|gb|EHB07109.1| Replication protein A 70 kDa DNA-binding subunit [Heterocephalus
glaber]
Length = 514
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 148/383 (38%), Positives = 212/383 (55%), Gaps = 85/383 (22%)
Query: 455 WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYY 514
WT+ ARVTNK+ IR W+N+RG GKLFS++L+DESGEIRAT FN++ ++F +IE +KVYY
Sbjct: 131 WTVCARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYY 190
Query: 515 ISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPD 574
S TLK ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F + + S D
Sbjct: 191 FSKGTLKIANKQFTAVKNDYEMTFNNETSVVPCEDDH--HLPTVQFDFTGIGDLENKSKD 248
Query: 575 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKP 634
ID++G+C + + +T K++ + KR+I L+D S VT TLWG++A+ FD S +P
Sbjct: 249 SLIDIIGICKSYEDATKITVKSSNREVAKRNIYLMDMSGKVVTATLWGEDADKFDGSRQP 308
Query: 635 VIAVKAARVSEFQGNLL------------------------------------------- 651
V+A+K ARVS+F G L
Sbjct: 309 VMAIKGARVSDFGGRTLSVLSSSTIIMNPDIPEAYKLRGWFDAEGQALDGVSISDLKSGG 368
Query: 652 ---------LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQN 702
+ E++ + LG GDKADY S + R N Y+ACP+QDCNKKVIDQ
Sbjct: 369 LGASNTNWKTLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQ 428
Query: 703 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH 762
NG+YRCEKC++EF F YR+IL + +FQN
Sbjct: 429 NGLYRCEKCDREFPNFKYRMILS------NEQAFEEVFQN-------------------- 462
Query: 763 PALKKALFTQYIFRLRAKLEHYN 785
A F ++F++R KLE YN
Sbjct: 463 -----ANFRSFMFKIRVKLETYN 480
Score = 248 bits (634), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 129/323 (39%), Positives = 192/323 (59%), Gaps = 39/323 (12%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F + + S D ID++G+
Sbjct: 199 ANKQFTAVKNDYEMTFNNETSVVPCEDDH--HLPTVQFDFTGIGDLENKSKDSLIDIIGI 256
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T K++ + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 257 CKSYEDATKITVKSSNREVAKRNIYLMDMSGKVVTATLWGEDADKFDGSRQPVMAIKGAR 316
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG+TLS+ SS + +NPDIPE +KL+GWF + + VS ++GG+G
Sbjct: 317 VSDF-GGRTLSVLSSSTIIMNPDIPEAYKLRGWFDAEGQA-LDGVSISDLKSGGLGASNT 374
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E++ + LG GDKADY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 375 -NWKTLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 433
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKK 302
CEKC++EF F YR+IL + +FQN
Sbjct: 434 CEKCDREFPNFKYRMILS------NEQAFEEVFQN------------------------- 462
Query: 303 ALFTQYIFRLRAKLEHYNGTKKI 325
A F ++F++R KLE YN +I
Sbjct: 463 ANFRSFMFKIRVKLETYNDESRI 485
>gi|429855381|gb|ELA30339.1| replication factor-a protein 1 [Colletotrichum gloeosporioides Nara
gc5]
Length = 607
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 181/535 (33%), Positives = 280/535 (52%), Gaps = 95/535 (17%)
Query: 330 NINSFA--MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKP 387
++N++ MLATQ+N ++ DG L IV+I +Y + V +++LIIL L +I+
Sbjct: 56 DVNNYVQCMLATQVNHVVHDGKLVRNCIVRITQYQANAVKG-----KNILIILGLEVIEN 110
Query: 388 -GTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSN---GVHNNVAIPR-QASAPVVQT 442
GT KIG PQ + PAA T G GV P+ Q S P
Sbjct: 111 LGTPD--KIGEPQAF-------EAKAPPAANTTIGGQNFYGVKQEETKPKPQQSIPTRTA 161
Query: 443 ------------HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE 490
+PI +LSPY +KWTIKARVT K+ IR W+ G GKLFS++LLDESGE
Sbjct: 162 GGASGQHGSNNIYPIEALSPYAHKWTIKARVTQKSDIRTWHKPSGEGKLFSVNLLDESGE 221
Query: 491 IRATMFNDECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNE 549
I+AT FN++ ++++D++++ VYYISN C ++ A K+F+++ NDYE++F T+I E
Sbjct: 222 IKATGFNEQVDQYYDLLQEGSVYYISNPCKVQLAKKQFTNLPNDYELTFERD-TLIEKAE 280
Query: 550 DEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLV 609
D+ N+P V++ F ++ + E+ D +DV+GV D AE+S + K+ K Y KR++TLV
Sbjct: 281 DQ-SNVPQVRFNFCNIQELQEVEKDATVDVIGVLKDVAEVSQIVSKSTGKPYEKRELTLV 339
Query: 610 DQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM---------------- 653
D + SV +T+WGK A FD + V+A K +VS+F G L +
Sbjct: 340 DDTNYSVRVTIWGKSATGFDVKPESVVAFKGVKVSDFGGRSLSLLSSGTMSIDPDITEAH 399
Query: 654 -----------------------------REIQD--------QQLGMGDKADYCSVRGII 676
R+ QD + LGM ++ DY +++ I
Sbjct: 400 RLKGWYDSSGRNDAFNTHNNMASMGNATGRKDQDKSIVQVKEENLGM-EQQDYFNLKATI 458
Query: 677 QVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW 736
+ N Y AC S+ C+KKV D +G +RCEKC+ YR I+ V + D TN +W
Sbjct: 459 VYIKQDNFAYPACMSEGCSKKVTDMGDGTWRCEKCDISHPRPEYRYIMSVNVCDHTNQLW 518
Query: 737 VTLFQNEAESILGVTAQEVGESTEDHP-----ALKKALFTQYIFRLRAKLEHYNK 786
++ F + ++G++A ++ ED A ++A + FR RAK++ + +
Sbjct: 519 LSCFDDVGRIVMGMSADDLMALREDDETKLAQAFEEANCRKLNFRCRAKMDTFGE 573
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 115/344 (33%), Positives = 194/344 (56%), Gaps = 17/344 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+F+++ NDYE++F T +I ED+ N+P V++ F ++ + E+ D +DV+GV
Sbjct: 255 AKKQFTNLPNDYELTFERDT-LIEKAEDQ-SNVPQVRFNFCNIQELQEVEKDATVDVIGV 312
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D AE+S + K+ K Y KR++TLVD + SV +T+WGK A FD + V+A K +
Sbjct: 313 LKDVAEVSQIVSKSTGKPYEKRELTLVDDTNYSVRVTIWGKSATGFDVKPESVVAFKGVK 372
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGG--GAAG 183
VS+F GG++LSL S +S++PDI E H+L+GW+ + MG G
Sbjct: 373 VSDF-GGRSLSLLSSGTMSIDPDITEAHRLKGWYDSSGRNDAFNTHNNMASMGNATGRKD 431
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ +++++ LGM ++ DY +++ I + N Y AC S+ C+KKV D +G +RC
Sbjct: 432 QDKSIVQVKEENLGM-EQQDYFNLKATIVYIKQDNFAYPACMSEGCSKKVTDMGDGTWRC 490
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP----- 298
EKC+ YR I+ V + D TN +W++ F + ++G++A ++ ED
Sbjct: 491 EKCDISHPRPEYRYIMSVNVCDHTNQLWLSCFDDVGRIVMGMSADDLMALREDDETKLAQ 550
Query: 299 ALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLN 342
A ++A + FR RAK++ + ++++ V M ATQ++
Sbjct: 551 AFEEANCRKLNFRCRAKMDTFGESQRVRYQV------MSATQID 588
>gi|358389545|gb|EHK27137.1| hypothetical protein TRIVIDRAFT_85768 [Trichoderma virens Gv29-8]
Length = 600
Score = 280 bits (715), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 177/528 (33%), Positives = 282/528 (53%), Gaps = 83/528 (15%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGVN MLATQ N +I D L ++ ++K+Y + + +++L+IL+L +
Sbjct: 53 MSDGVNYVQ-TMLATQANHVIHDNKLERGSLTRVKQY-----TPNNLKGKNILVILDLEV 106
Query: 385 IKP-GTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQ--ASAPVVQ 441
I+ G + KIG+P L D + T A + GS + Q S P+
Sbjct: 107 IESFGAQE--KIGDPVVL----DPRPAETTIAGNDFYGSKKEEMDTKPQMQQLPSNPISA 160
Query: 442 TH------PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATM 495
TH PI +LSP+ +KWTIKARVT K+ I+ W+ G GKLFS++LLDESGEI+AT
Sbjct: 161 THAGANIYPIEALSPFSSKWTIKARVTFKSDIKTWHKPTGEGKLFSVNLLDESGEIKATG 220
Query: 496 FNDECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN 554
FND+C+ F+D++++ VYYIS+ C + A K+FS++ NDYE++F TVI ED+ N
Sbjct: 221 FNDQCDAFYDLLQEGSVYYISSPCRVSLAKKQFSNLPNDYELAFERE-TVIEKAEDQT-N 278
Query: 555 MPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA 614
+P +++ F ++ + + D +DV+GV + AE+S +T K + + + KR++TLVD +
Sbjct: 279 VPQLRFNFCTIQELQSVEKDSTVDVIGVLKEVAEVSEITSKKDGRPFQKRELTLVDDTGY 338
Query: 615 SVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM--------------------- 653
SV +T+WGK A FDA+ + V+A K +VS+F G L +
Sbjct: 339 SVRVTIWGKTASAFDANPESVVAFKGTKVSDFGGKSLSLLSSGTMTVDPDIPDAYRLKGW 398
Query: 654 --------------------------REIQ------DQQLGMGDKADYCSVRGIIQVFRG 681
EI+ D+ LG+ D+A Y +++ I +
Sbjct: 399 YDSAGRTNTFATHQNLAGVAGATGRKEEIKTISQVKDENLGVDDQA-YYTIKATIVFVKQ 457
Query: 682 SNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQ 741
N Y AC +Q CNKKV +G ++CEKCN + YR I+ + + D T+ W++ F
Sbjct: 458 DNFCYPACSNQGCNKKVTAMPDGTWQCEKCNVSHDKPDYRYIMQLNVADHTSHQWLSCFD 517
Query: 742 NEAESILGVTAQEVGESTEDHPALKKALF-----TQYIFRLRAKLEHY 784
+ ++G++A E+ E E+ A A F + +FR RAK++++
Sbjct: 518 DTGRIVVGMSANELMELKENDDAKFMAAFEAVNCKKLVFRCRAKMDNF 565
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/350 (33%), Positives = 203/350 (58%), Gaps = 18/350 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ NDYE++F T VI ED+ N+P +++ F ++ + + D +DV+GV
Sbjct: 249 AKKQFSNLPNDYELAFERET-VIEKAEDQT-NVPQLRFNFCTIQELQSVEKDSTVDVIGV 306
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ AE+S +T K + + + KR++TLVD + SV +T+WGK A FDA+ + V+A K +
Sbjct: 307 LKEVAEVSEITSKKDGRPFQKRELTLVDDTGYSVRVTIWGKTASAFDANPESVVAFKGTK 366
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGG--GAAG 183
VS+F GGK+LSL S ++++PDIP+ ++L+GW+ + T Q G+ G G
Sbjct: 367 VSDF-GGKSLSLLSSGTMTVDPDIPDAYRLKGWYDSAGRTNTFATHQNLAGVAGATGRKE 425
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ + +++D+ LG+ D+A Y +++ I + N Y AC +Q CNKKV +G ++C
Sbjct: 426 EIKTISQVKDENLGVDDQA-YYTIKATIVFVKQDNFCYPACSNQGCNKKVTAMPDGTWQC 484
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
EKCN + YR I+ + + D T+ W++ F + ++G++A E+ E E+ A A
Sbjct: 485 EKCNVSHDKPDYRYIMQLNVADHTSHQWLSCFDDTGRIVVGMSANELMELKENDDAKFMA 544
Query: 304 LF-----TQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDIITDG 348
F + +FR RAK++++ T+++ + + + L D T+G
Sbjct: 545 AFEAVNCKKLVFRCRAKMDNFGDTQRV-------RYQVFSATLVDYKTEG 587
>gi|390597691|gb|EIN07090.1| replication factor-a protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 621
Score = 280 bits (715), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 180/532 (33%), Positives = 260/532 (48%), Gaps = 94/532 (17%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AMLATQLN +I D T+ + +IV + R+ + V R ++IIL+L P +I K
Sbjct: 65 AMLATQLNHLIEDETIGKHSIVVLDRFTANVVQ-----ERRLIIILDLT---PVLKIAEK 116
Query: 395 IGNPQPLN------TNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTH----- 443
IG+P + T+ D + P S +N PR SAP T
Sbjct: 117 IGDPSAITLSDQPTTDGDVPMAETAPTPAPARASAPSVSNTVPPR--SAPQRSTPGNKSG 174
Query: 444 -------PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMF 496
PI LSPYQN WTIKARVT K+ IR W+N RG GKLF++ L+DESGEIR T F
Sbjct: 175 GRQSAILPIEGLSPYQNNWTIKARVTQKSDIRTWSNQRGEGKLFNVTLMDESGEIRGTGF 234
Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
ND + ++ ++ KVY+IS + A KKFS++ NDYE+SF +T V C + +P
Sbjct: 235 NDVVDALYEKFQEGKVYFISRARVNLAKKKFSNLANDYELSFERNTEVEECLDPS--GVP 292
Query: 557 SVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
+VKY F PL + + D DVLGV + ++++ KT K +KR++TLVD S SV
Sbjct: 293 AVKYEFTPLAELEQKEKDSTCDVLGVVKEDGGVATIVSKTTHKELLKRELTLVDSSGYSV 352
Query: 617 TMTLWGKEAETFDASNKPVIAVKAARVSE------------------------------- 645
+TLWGK+AE ++ ++ PV+A K RV +
Sbjct: 353 RLTLWGKQAEAWNHTDNPVVAFKGVRVGDFGGRSLSMVSSSTMQIEPDIPEVHHLRGWYD 412
Query: 646 -------FQGNLLL--------------------MREIQDQQLGMGDKADYCSVRGIIQV 678
FQ + L + EI+D QLG D+ D + +
Sbjct: 413 GVGNSQSFQSHSFLSGGAGGAGMGGTFNRAEVKTLGEIRDLQLGSSDRPDNFFAQATVMH 472
Query: 679 FRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVT 738
RG N Y ACP + CNKKV+ +G +RCEKC++ ++ YR I+ + + D T W
Sbjct: 473 VRGENIAYPACPKEGCNKKVVQIPDGRWRCEKCDESYDAPEYRYIVSMAVADHTGQAWFQ 532
Query: 739 LFQNEAESIL-GVTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKLEHY 784
F + ++ ++A E+ + E A L KA + F RAK + +
Sbjct: 533 GFNDVGLAVFNNMSATELVQIKERDEAKFNGILHKAGCQTFNFSCRAKQDTF 584
Score = 208 bits (530), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 121/356 (33%), Positives = 193/356 (54%), Gaps = 19/356 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A KKFS++ NDYE+SF +T V C + +P+VKY F PL + + D DVLGV
Sbjct: 261 AKKKFSNLANDYELSFERNTEVEECLDPS--GVPAVKYEFTPLAELEQKEKDSTCDVLGV 318
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ ++++ KT K +KR++TLVD S SV +TLWGK+AE ++ ++ PV+A K R
Sbjct: 319 VKEDGGVATIVSKTTHKELLKRELTLVDSSGYSVRLTLWGKQAEAWNHTDNPVVAFKGVR 378
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-------STQTNTRFEPVSQRTGGMG 178
V +F GG++LS+ SS + + PDIPE H L+GW+ S Q+++ + G G
Sbjct: 379 VGDF-GGRSLSMVSSSTMQIEPDIPEVHHLRGWYDGVGNSQSFQSHSFLSGGAGGAGMGG 437
Query: 179 GGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNN 238
+ + EI+D QLG D+ D + + RG N Y ACP + CNKKV+ +
Sbjct: 438 TFNRAEVKTLGEIRDLQLGSSDRPDNFFAQATVMHVRGENIAYPACPKEGCNKKVVQIPD 497
Query: 239 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL-GVTAQEVGESTEDH 297
G +RCEKC++ ++ YR I+ + + D T W F + ++ ++A E+ + E
Sbjct: 498 GRWRCEKCDESYDAPEYRYIVSMAVADHTGQAWFQGFNDVGLAVFNNMSATELVQIKERD 557
Query: 298 PA-----LKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINS---FAMLATQLNDII 345
A L KA + F RAK + + + ++ G++ + +A A L D++
Sbjct: 558 EAKFNGILHKAGCQTFNFSCRAKQDTFGDSTRVRYGISRITPLDYAADAAYLRDLL 613
>gi|347441232|emb|CCD34153.1| similar to replication protein A 70 kDa DNA-binding subunit
[Botryotinia fuckeliana]
Length = 609
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 176/525 (33%), Positives = 266/525 (50%), Gaps = 91/525 (17%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILE-LNIIKPGTEIGFK 394
MLATQ N +I DG L++ +++K Y + V + ++E L ++ K
Sbjct: 65 MLATQANHVIHDGKLTKGCFIRLKNYQANEVKGKRILIILDIDVIESLGTME-------K 117
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASA----------PVVQT-- 442
IG P + D P T+ GS G + N P+Q +A P +
Sbjct: 118 IGEPTAVKVEED-----VKPTNTSIAGS-GFYGNKPQPQQPAAQDRALPSRNGPSSSSSH 171
Query: 443 ---HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE 499
+PI SLSPY +KWTIKARVT+K+ IR W+ GKLFS++LLDESGEI+AT FN++
Sbjct: 172 ATIYPIESLSPYAHKWTIKARVTSKSDIRTWSKPNSEGKLFSVNLLDESGEIKATGFNEQ 231
Query: 500 CNRFHDMIEKDKVYYI-SNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV 558
C+ ++ ++ VYYI S C ++ A K+FS+INNDYE+ F T V + + N+P V
Sbjct: 232 CDALYETFQEGSVYYITSPCRVQIAKKQFSNINNDYELMFERDTLVEKAEDQD--NVPQV 289
Query: 559 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM 618
+Y F + + I D +D++ V + E+S +T KT K Y KR++TLVD++ SV +
Sbjct: 290 RYNFSNIGDLQSIEKDSTVDLIAVLKEVGEISEITSKTTSKPYSKRELTLVDETGYSVRL 349
Query: 619 TLWGKEAETFDASNKPVIAVKAARVSEF-------------------------------- 646
T+WGK A +FDAS + V+A K +VS+F
Sbjct: 350 TIWGKTATSFDASPESVVAFKGVKVSDFGGRSLSLLSSGSMSFDPDIQEAHKLKGWYDSQ 409
Query: 647 ---------------------QGNLLLMREIQDQQLGMGDK-ADYCSVRGIIQVFRGSNT 684
Q + + +++D+ LGM ++ DY S R I + N
Sbjct: 410 GRTSNFASHSNLASAGAAGGRQDPIKTIAQVKDEGLGMSEENTDYFSSRATIVYIKQDNF 469
Query: 685 TYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEA 744
Y AC +++CNKKV+DQN+G +RCEKCN+ YR IL + + D T +W+T F
Sbjct: 470 CYPACLNENCNKKVVDQNDGTWRCEKCNQSHPKPEYRYILALNVNDHTGQMWLTAFDEVG 529
Query: 745 ESILGVTAQEVGESTEDHPALKKALFTQ-----YIFRLRAKLEHY 784
I+G +A E+ E E+ P + +F F++R K + Y
Sbjct: 530 RLIMGKSADELMELKENDPPAMERVFEDANCKMMTFKVRCKTDTY 574
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/328 (37%), Positives = 188/328 (57%), Gaps = 11/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS+INNDYE+ F T V + + N+P V+Y F + + I D +D++ V
Sbjct: 256 AKKQFSNINNDYELMFERDTLVEKAEDQD--NVPQVRYNFSNIGDLQSIEKDSTVDLIAV 313
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ E+S +T KT K Y KR++TLVD++ SV +T+WGK A +FDAS + V+A K +
Sbjct: 314 LKEVGEISEITSKTTSKPYSKRELTLVDETGYSVRLTIWGKTATSFDASPESVVAFKGVK 373
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQ-RTGGMGGGAAG 183
VS+F G++LSL S +S +PDI E HKL+GW+ +Q T F S + G GG
Sbjct: 374 VSDFG-GRSLSLLSSGSMSFDPDIQEAHKLKGWYDSQGRTSNFASHSNLASAGAAGGRQD 432
Query: 184 NLLLMREIQDQQLGMGDK-ADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
+ + +++D+ LGM ++ DY S R I + N Y AC +++CNKKV+DQN+G +R
Sbjct: 433 PIKTIAQVKDEGLGMSEENTDYFSSRATIVYIKQDNFCYPACLNENCNKKVVDQNDGTWR 492
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKK 302
CEKCN+ YR IL + + D T +W+T F I+G +A E+ E E+ P +
Sbjct: 493 CEKCNQSHPKPEYRYILALNVNDHTGQMWLTAFDEVGRLIMGKSADELMELKENDPPAME 552
Query: 303 ALFTQ-----YIFRLRAKLEHYNGTKKI 325
+F F++R K + Y ++
Sbjct: 553 RVFEDANCKMMTFKVRCKTDTYQDQARV 580
>gi|213408425|ref|XP_002174983.1| replication factor-A protein [Schizosaccharomyces japonicus yFS275]
gi|212003030|gb|EEB08690.1| replication factor-A protein [Schizosaccharomyces japonicus yFS275]
Length = 608
Score = 278 bits (711), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 174/525 (33%), Positives = 266/525 (50%), Gaps = 84/525 (16%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
+ML+TQLN ++ + L + VQ+ ++ V+ + R +LI+L LN++ P I K
Sbjct: 61 SMLSTQLNHLVMENKLVKGAFVQLTQFTVNVMKE-----RKILIVLGLNVL-PELGISEK 114
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNTN---------GSNGVHNNVAIPRQASAPVVQT--- 442
IGNP L T QQ A+ + G+ N A A V+
Sbjct: 115 IGNPAGLETVDVLKQQQQQNASKPPSESSSTSSFYGNRPPPMNNAPAPAAKRNAVRAGGG 174
Query: 443 -----HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFN 497
+PI LSPYQNKWTI+ARVTNK+ I+ W+N RG GKLFS++LLDESGEIRAT FN
Sbjct: 175 LSTIIYPIEGLSPYQNKWTIRARVTNKSEIKHWHNQRGEGKLFSVNLLDESGEIRATGFN 234
Query: 498 DECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPS 557
++ + F+D++++ +VY+IS C + A K+FS++ N+YE+ F T I +ED+ +P
Sbjct: 235 EQVDAFYDILQEGQVYFISKCRVNIAKKQFSNVQNEYELMFERDTE-IKKSEDQ-NAVPM 292
Query: 558 VKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVT 617
++ FV L+ + +++ D IDV+GV + + +T + + + KRDIT+VDQS +
Sbjct: 293 ARFNFVTLEEVGKVAKDAIIDVIGVLQNIGPVQQITSRATSRGFDKRDITIVDQSGFEMR 352
Query: 618 MTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM---------------REIQDQQLG 662
MT+WGK+A F + +IA K +V++FQG L M ++ G
Sbjct: 353 MTVWGKQAIDFSVPEESIIAFKGVKVNDFQGRSLSMLNSSTMTTDPDIPEAHTLKGWYDG 412
Query: 663 MGDKADYCSVRGIIQVFRGSNTT------------------------------------- 685
G D+ V G+N T
Sbjct: 413 QGRAQDFMKHSSAATVGSGTNRTAERKTVAEVQAQHLGMSETPDYFSLKATVVYIRKKNI 472
Query: 686 -YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEA 744
Y ACP+ DCNKKV DQ G + CEKCNK++ YR I+ + GD T +W+ +F +
Sbjct: 473 SYPACPTPDCNKKVFDQ-GGSWHCEKCNKDYEAPHYRYIMTIAAGDHTGQLWLNVFDDVG 531
Query: 745 ESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHY 784
++G TA E+ E+ + A + Y+F RAK +++
Sbjct: 532 RILMGKTADELNAMQENDENEFTSVMSDASYVPYVFECRAKQDNF 576
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 114/327 (34%), Positives = 184/327 (56%), Gaps = 11/327 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ N+YE+ F T I +ED+ +P ++ FV L+ + +++ D IDV+GV
Sbjct: 260 AKKQFSNVQNEYELMFERDTE-IKKSEDQ-NAVPMARFNFVTLEEVGKVAKDAIIDVIGV 317
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ + +T + + + KRDIT+VDQS + MT+WGK+A F + +IA K +
Sbjct: 318 LQNIGPVQQITSRATSRGFDKRDITIVDQSGFEMRMTVWGKQAIDFSVPEESIIAFKGVK 377
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR--FEPVSQRTGGMGGGAAG 183
V++FQ G++LS+ SS ++ +PDIPE H L+GW+ Q + + S T G G
Sbjct: 378 VNDFQ-GRSLSMLNSSTMTTDPDIPEAHTLKGWYDGQGRAQDFMKHSSAATVGSGTNRTA 436
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ E+Q Q LGM + DY S++ + R N +Y ACP+ DCNKKV DQ G + C
Sbjct: 437 ERKTVAEVQAQHLGMSETPDYFSLKATVVYIRKKNISYPACPTPDCNKKVFDQ-GGSWHC 495
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----P 298
EKCNK++ YR I+ + GD T +W+ +F + ++G TA E+ E+
Sbjct: 496 EKCNKDYEAPHYRYIMTIAAGDHTGQLWLNVFDDVGRILMGKTADELNAMQENDENEFTS 555
Query: 299 ALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A + Y+F RAK +++ G ++
Sbjct: 556 VMSDASYVPYVFECRAKQDNFKGEVRV 582
>gi|154288368|ref|XP_001544979.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150408620|gb|EDN04161.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 549
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 163/463 (35%), Positives = 255/463 (55%), Gaps = 23/463 (4%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLATQ N +T G L V++K + + V + +LIIL+L ++ KI
Sbjct: 61 MLATQANHYVTSGQLVRGCFVRLKSFQANMVKG-----KRILIILDLEVLDRLGICEKKI 115
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQT-------HPIVSL 448
G+PQPL+ + + P ++NG G P+Q + +PI +L
Sbjct: 116 GDPQPLDAKQEEQD-KTIPTTISSNGFYGSRGPQQPPQQPAQRSAAAASAHANIYPIEAL 174
Query: 449 SPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIE 508
SPY +KWTIKAR TNK+ I+ W+N G GKLFS++LLD+SGEIRAT F D+C+ + + E
Sbjct: 175 SPYSHKWTIKARCTNKSAIKTWHNKNGEGKLFSVNLLDDSGEIRATAFKDQCDSLYSVFE 234
Query: 509 KDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKT 567
+ VYYIS+ C ++ A K F+++NN+YE++F T V +E ++P +++ F +
Sbjct: 235 EGCVYYISSPCRVQMAKKAFNNLNNEYELTFEKDTVVE--KAEEQNDVPQIRFNFTNIAN 292
Query: 568 IAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET 627
+ + IDV+GV D ELS + KT K Y KRD+TLVD + SV +T+WG A+
Sbjct: 293 LQSVEAGTTIDVIGVLKDVGELSQILSKTTSKPYDKRDLTLVDNTGYSVRLTVWGNIAKE 352
Query: 628 FDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGI-IQVFRGSNTTY 686
FD+ + V+A K +VS+F G L + + + D D ++G + + Y
Sbjct: 353 FDSVPESVVAFKGVKVSDFNGRSLSLLSSGSMTVDL-DIEDAHKLKGCHCGLCQADTMAY 411
Query: 687 KACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAES 746
AC + CNKKV+ NG +RCE+C++ F YR IL V + D T ++W++ F +
Sbjct: 412 SACLTDKCNKKVLQDENGQWRCERCDQSFPHPEYRYILSVNVCDHTGALWLSCFDEVGKI 471
Query: 747 ILGVTAQEVGESTED-----HPALKKALFTQYIFRLRAKLEHY 784
ILG +A E+ E E+ +++A + F RAK++++
Sbjct: 472 ILGTSANELMELKENDERAYEELVQRANCRSWNFNCRAKMDNF 514
Score = 152 bits (383), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 174/354 (49%), Gaps = 62/354 (17%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K F+++NN+YE++F T V +E ++P +++ F + + + IDV+GV
Sbjct: 250 AKKAFNNLNNEYELTFEKDTVVE--KAEEQNDVPQIRFNFTNIANLQSVEAGTTIDVIGV 307
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D ELS + KT K Y KRD+TLVD + SV +T+WG A+ FD+ + V+A K +
Sbjct: 308 LKDVGELSQILSKTTSKPYDKRDLTLVDNTGYSVRLTVWGNIAKEFDSVPESVVAFKGVK 367
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
VS+F G++LSL S ++++ DI + HKL+G
Sbjct: 368 VSDF-NGRSLSLLSSGSMTVDLDIEDAHKLKGC--------------------------- 399
Query: 186 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 245
+C G+ Q Y AC + CNKKV+ NG +RCE+
Sbjct: 400 ------------------HC---GLCQ---ADTMAYSACLTDKCNKKVLQDENGQWRCER 435
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED-----HPAL 300
C++ F YR IL V + D T ++W++ F + ILG +A E+ E E+ +
Sbjct: 436 CDQSFPHPEYRYILSVNVCDHTGALWLSCFDEVGKIILGTSANELMELKENDERAYEELV 495
Query: 301 KKALFTQYIFRLRAKLEHYNGTKKIP---DGVNINSFAMLATQLNDIITDGTLS 351
++A + F RAK++++ +++ V+ +++ +T+L ++I LS
Sbjct: 496 QRANCRSWNFNCRAKMDNFQDQQRVRYQVSSVSAIDYSVESTRLAELINAYELS 549
>gi|255954847|ref|XP_002568176.1| Pc21g11440 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589887|emb|CAP96041.1| Pc21g11440 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 609
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 170/522 (32%), Positives = 269/522 (51%), Gaps = 82/522 (15%)
Query: 336 MLATQL-NDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
MLAT++ N ++TDG+L + + V++K + S S + +LIIL+L ++K E K
Sbjct: 62 MLATRMSNSVVTDGSLRKGSFVRLKSF-----QSNSVKGKKILIILDLEVLKELGEAD-K 115
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNTNG-----SNGVH---NNVAIPRQASAPVVQTH--- 443
IG P+PL + Q P + NG G H N A P A H
Sbjct: 116 IGEPKPLEAKPEEGEVGQ-PTTISGNGFYGSKMEGAHAQQNRRAQPMSAPMSSSSAHATI 174
Query: 444 -PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNR 502
PI ++SPY NKWT+KAR T+K+ I+ W+N G GKLFS++LLD+SGEIRAT FN++C+
Sbjct: 175 YPIEAISPYSNKWTMKARCTSKSNIKTWHNKNGEGKLFSVNLLDDSGEIRATGFNEQCDM 234
Query: 503 FHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC 561
+++ ++ VYYIS+ C ++ A K+F+++NNDYE++F T V +E ++P +++
Sbjct: 235 LYELFQEGSVYYISSPCRVQIAKKQFTNLNNDYELTFERDTIVEKA--EEQNDVPQIRFN 292
Query: 562 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
F + + + D IDV+GV D E S +T K+ K Y KR++TLVD + SV +T+W
Sbjct: 293 FTTVADLQTVEKDTTIDVIGVLKDVGETSQITSKSTGKPYDKRELTLVDNTGFSVRLTIW 352
Query: 622 GKEAETFDASNKPVIAVKAARVSEFQ------------------GNLLLMREIQDQQ--- 660
G A F + + V+A K +VS+F G +R D Q
Sbjct: 353 GASANNFSVAPESVVAFKGVKVSDFGGRSLSLLSSGSMTVDPDIGEAHRLRGWYDAQGRS 412
Query: 661 --------------------------------LGMGDKADYCSVRGIIQVFRGSNT-TYK 687
LGM + DY S++ + + +T Y
Sbjct: 413 ENFTSHASLSNATNSTAKMDRFKTVAQVREEQLGMSETPDYFSLKATVTYIKQDSTWCYP 472
Query: 688 ACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESI 747
AC S++CNKKV + + G +RCEKC+K YR ++P+ + D T +W++ F +I
Sbjct: 473 ACLSENCNKKVTELDPGQWRCEKCDKTHPKPEYRYVMPISVSDHTGQLWLSCFDETGRNI 532
Query: 748 LGVTAQEVGESTEDHPALKKALF-----TQYIFRLRAKLEHY 784
+G A E+ + ED P+ +F + FR +A ++++
Sbjct: 533 MGKPADELMQLREDDPSAFGEVFQGANCQTWSFRCKANVDNF 574
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 104/328 (31%), Positives = 185/328 (56%), Gaps = 11/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+F+++NNDYE++F T V +E ++P +++ F + + + D IDV+GV
Sbjct: 256 AKKQFTNLNNDYELTFERDTIVEKA--EEQNDVPQIRFNFTTVADLQTVEKDTTIDVIGV 313
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D E S +T K+ K Y KR++TLVD + SV +T+WG A F + + V+A K +
Sbjct: 314 LKDVGETSQITSKSTGKPYDKRELTLVDNTGFSVRLTIWGASANNFSVAPESVVAFKGVK 373
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRTGGMGGGAAGN 184
VS+F G++LSL S ++++PDI E H+L+GW+ Q + F + + A +
Sbjct: 374 VSDFG-GRSLSLLSSGSMTVDPDIGEAHRLRGWYDAQGRSENFTSHASLSNATNSTAKMD 432
Query: 185 LL-LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNT-TYKACPSQDCNKKVIDQNNGMYR 242
+ +++++QLGM + DY S++ + + +T Y AC S++CNKKV + + G +R
Sbjct: 433 RFKTVAQVREEQLGMSETPDYFSLKATVTYIKQDSTWCYPACLSENCNKKVTELDPGQWR 492
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKK 302
CEKC+K YR ++P+ + D T +W++ F +I+G A E+ + ED P+
Sbjct: 493 CEKCDKTHPKPEYRYVMPISVSDHTGQLWLSCFDETGRNIMGKPADELMQLREDDPSAFG 552
Query: 303 ALF-----TQYIFRLRAKLEHYNGTKKI 325
+F + FR +A ++++ +++
Sbjct: 553 EVFQGANCQTWSFRCKANVDNFGDQQRV 580
>gi|114145419|ref|NP_001041308.1| replication protein A 70 kDa DNA-binding subunit [Rattus
norvegicus]
gi|33086646|gb|AAP92635.1| Cb1-727 [Rattus norvegicus]
Length = 680
Score = 276 bits (707), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 149/352 (42%), Positives = 218/352 (61%), Gaps = 37/352 (10%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ G L+ + Q+ R+IV+ + G R V+I+++L +
Sbjct: 33 MSDGLNTLSSFMLATQLNALVEGGQLASNCVCQVHRFIVNTLKDG----RRVVILMDLEV 88
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNT------------NGSNGVHNNVAIP 432
+K E+G KIGNP P N + + QQ +A + NGS GV + VA
Sbjct: 89 VKSAGEVGVKIGNPVPYN---EGHAQQQAVSAPASAATPPASKPQPQNGSLGVGSTVAKA 145
Query: 433 RQASAPV----------------VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGS 476
AS P + PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG
Sbjct: 146 YGASKPFGKPAGTGLLQPTSGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGE 205
Query: 477 GKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEM 536
GKLFSI+L+DESGEIRAT FN++ ++F +IE +KVYY S TLK ANK+FS++ NDYEM
Sbjct: 206 GKLFSIELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFSAVKNDYEM 265
Query: 537 SFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKT 596
+F + T+V+PC + ++P+V++ F + + S D +D++G+C + + +T K+
Sbjct: 266 TFNNETSVLPCEDGH--HLPTVQFDFTGIGDLESKSKDSLVDIIGICKSYEDATKITVKS 323
Query: 597 NQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG 648
N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G
Sbjct: 324 NNREVAKRNICLMDMSGKVVTATLWGEDADKFDGSRQPVMAIKGARVSDFGG 375
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 93/166 (56%), Gaps = 14/166 (8%)
Query: 173 RTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKK 232
R+GG GG N + E + + LG GDKADY S + R N Y+ACP+QDCNKK
Sbjct: 489 RSGGTGGSNT-NWKTLYEAKSENLGQGDKADYFSTVATVVFLRKENCMYQACPTQDCNKK 547
Query: 233 VIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE 292
VIDQ NG+YRCEKC++EF F YR+IL V I D+ + WVT FQ AE+ILG +GE
Sbjct: 548 VIDQQNGLYRCEKCDREFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNTVYLGE 607
Query: 293 STED-------------HPALKKALFTQYIFRLRAKLEHYNGTKKI 325
E + A F + FR+R KLE YN +I
Sbjct: 608 LKEKVGCVFVSMNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRI 653
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 95/179 (53%), Gaps = 13/179 (7%)
Query: 620 LWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVF 679
+WG ++E + +++ N + E + + LG GDKADY S +
Sbjct: 470 MWGFDSEGQALDGVSISDLRSGGTGGSNTNWKTLYEAKSENLGQGDKADYFSTVATVVFL 529
Query: 680 RGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTL 739
R N Y+ACP+QDCNKKVIDQ NG+YRCEKC++EF F YR+IL V I D+ + WVT
Sbjct: 530 RKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSVNIADFQENQWVTC 589
Query: 740 FQNEAESILGVTAQEVGESTED-------------HPALKKALFTQYIFRLRAKLEHYN 785
FQ AE+ILG +GE E + A F + FR+R KLE YN
Sbjct: 590 FQESAEAILGQNTVYLGELKEKVGCVFVSMNEQAFEEVFQNANFRSFTFRIRVKLETYN 648
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 107/153 (69%), Gaps = 3/153 (1%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+FS++ NDYEM+F + T+V+PC + ++P+V++ F + + S D +D++G+
Sbjct: 252 ANKQFSAVKNDYEMTFNNETSVLPCEDGH--HLPTVQFDFTGIGDLESKSKDSLVDIIGI 309
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T K+N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 310 CKSYEDATKITVKSNNREVAKRNICLMDMSGKVVTATLWGEDADKFDGSRQPVMAIKGAR 369
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGW 158
VS+F GG++LS+ SS + +NPDIPE +KL+GW
Sbjct: 370 VSDF-GGRSLSVLSSSTVLVNPDIPEAYKLRGW 401
>gi|261187451|ref|XP_002620149.1| replication factor rfa1 [Ajellomyces dermatitidis SLH14081]
gi|239594199|gb|EEQ76780.1| replication factor rfa1 [Ajellomyces dermatitidis SLH14081]
gi|239609246|gb|EEQ86233.1| replication factor rfa1 [Ajellomyces dermatitidis ER-3]
gi|327356481|gb|EGE85338.1| replication factor [Ajellomyces dermatitidis ATCC 18188]
Length = 603
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 170/519 (32%), Positives = 265/519 (51%), Gaps = 81/519 (15%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLATQ N +T G L V++K + + V + +LIIL+L +++ KI
Sbjct: 61 MLATQANHYVTSGQLVRGCFVRLKSFQANMVKG-----KRILIILDLEVLERLGICEKKI 115
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNN---------VAIPRQASAPVVQT--HP 444
G PQPL D +Q A T SNG + + R +S+ +P
Sbjct: 116 GEPQPL----DAKQEEQDKALPTTISSNGFYGSRGPQQQAPQQPAQRSSSSAGAHANIYP 171
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
I +LSPY +KWTIKAR TNK+ I+ W+N G GKLFS++LLD+SGEIRAT F D+C+ +
Sbjct: 172 IEALSPYSHKWTIKARCTNKSAIKTWHNKNGEGKLFSVNLLDDSGEIRATAFKDQCDSLY 231
Query: 505 DMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+ E+ VYYIS+ C ++ A K F+++NN+YE++F T V +E ++P +++ F
Sbjct: 232 GVFEEGSVYYISSPCRVQIAKKAFNNLNNEYELTFEKDTVVEKA--EEQNDVPQIRFNFT 289
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
+ + + IDV+GV D E S + KT K Y KRD+TLVD + SV +T+WG
Sbjct: 290 NIANLQSVEAGTTIDVIGVLKDVGETSQILSKTTSKPYDKRDLTLVDNTGYSVRLTVWGN 349
Query: 624 EAETFDASNKPVIAVKAARVSEFQGN---------LLLMREIQDQQ-------------- 660
A+ FD+ + V+A K +VS++ G + + +I+D
Sbjct: 350 TAKEFDSVPESVVAFKGVKVSDYNGRSLSLLSSGSMTVDPDIEDAHKLKGWYDAQGRSET 409
Query: 661 ----------LGMGDKA--------------------DYCSVRGIIQVFRGSNTTYKACP 690
G GD+A DY SV+ + + + Y AC
Sbjct: 410 FASHDSMSNAAGFGDRASSFKTIVQVHEGNLGMSEKPDYFSVKATVVYIKQDSMAYPACL 469
Query: 691 SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGV 750
+ CNKKV+ +NG +RCE+C++ F +R IL V + D T ++W++ F + ILG
Sbjct: 470 TDKCNKKVLQDDNGQWRCERCDQSFPHPEHRYILSVNVCDHTGAMWLSCFDEVGKLILGT 529
Query: 751 TAQEVGESTED-----HPALKKALFTQYIFRLRAKLEHY 784
+A E+ E E+ ++KA + F+ RAK++++
Sbjct: 530 SANELMELKENDERAYEELVQKANCRAWNFKCRAKMDNF 568
Score = 196 bits (498), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 107/327 (32%), Positives = 184/327 (56%), Gaps = 10/327 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K F+++NN+YE++F T V +E ++P +++ F + + + IDV+GV
Sbjct: 251 AKKAFNNLNNEYELTFEKDTVVEKA--EEQNDVPQIRFNFTNIANLQSVEAGTTIDVIGV 308
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D E S + KT K Y KRD+TLVD + SV +T+WG A+ FD+ + V+A K +
Sbjct: 309 LKDVGETSQILSKTTSKPYDKRDLTLVDNTGYSVRLTVWGNTAKEFDSVPESVVAFKGVK 368
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRTGGMG-GGAAG 183
VS++ G++LSL S ++++PDI + HKL+GW+ Q + F + G G A
Sbjct: 369 VSDY-NGRSLSLLSSGSMTVDPDIEDAHKLKGWYDAQGRSETFASHDSMSNAAGFGDRAS 427
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ + ++ + LGM +K DY SV+ + + + Y AC + CNKKV+ +NG +RC
Sbjct: 428 SFKTIVQVHEGNLGMSEKPDYFSVKATVVYIKQDSMAYPACLTDKCNKKVLQDDNGQWRC 487
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED-----HP 298
E+C++ F +R IL V + D T ++W++ F + ILG +A E+ E E+
Sbjct: 488 ERCDQSFPHPEHRYILSVNVCDHTGAMWLSCFDEVGKLILGTSANELMELKENDERAYEE 547
Query: 299 ALKKALFTQYIFRLRAKLEHYNGTKKI 325
++KA + F+ RAK++++ +++
Sbjct: 548 LVQKANCRAWNFKCRAKMDNFQDQQRV 574
>gi|310793692|gb|EFQ29153.1| replication factor-a protein 1 [Glomerella graminicola M1.001]
Length = 608
Score = 276 bits (705), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 177/537 (32%), Positives = 285/537 (53%), Gaps = 98/537 (18%)
Query: 330 NINSFA--MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKP 387
++N++ MLATQ+N ++ + L IV+I +Y + S +++LIIL L +I+
Sbjct: 56 DVNNYVQCMLATQVNHVVHENKLVRNCIVRITQY-----QANSVKGKNILIILGLEVIE- 109
Query: 388 GTEIGF--KIGNPQPLNTNTDNSSTQQTPAATNT--NGSN--GVHN-------NVAIPRQ 434
++G KIG PQP + PAA NT G N GV +IP +
Sbjct: 110 --QLGTPDKIGEPQPF-------EAKPPPAAANTTIGGQNFYGVKQEETKPKPQQSIPSR 160
Query: 435 ASAPVVQTH------PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDES 488
++ H PI +LSPY +KWTIKARVT K+ IR W+ G GKLFS++LLDES
Sbjct: 161 SAGGATGQHGSSNIYPIEALSPYAHKWTIKARVTQKSDIRTWHKPSGEGKLFSVNLLDES 220
Query: 489 GEIRATMFNDECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPC 547
GEI+AT FN++ ++++DM+++ VYYIS+ C ++ A K+F+++ NDYE++F TVI
Sbjct: 221 GEIKATGFNEQVDQYYDMLQEGGVYYISSPCKVQLAKKQFTNLPNDYELTFERD-TVIEK 279
Query: 548 NEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDIT 607
ED+ ++P V++ F ++ + E+ D +D++GV D E+S + K+ K Y KR++T
Sbjct: 280 AEDQ-SSVPQVRFNFCNIQELQEVEKDATVDIIGVLKDVDEVSQIVSKSTGKPYEKRELT 338
Query: 608 LVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM-------------- 653
LVD + SV +T+WGK A FDA + V+A K +VS+F G L +
Sbjct: 339 LVDDTNYSVRVTIWGKSATNFDAKPESVVAFKGTKVSDFGGRSLSLLSSGTMSIDPDIPD 398
Query: 654 -------------------------------REIQD--------QQLGMGDKADYCSVRG 674
R+ QD + LGM ++ DY +++
Sbjct: 399 AHRLKGWYDSSGRNDTFSSHNNMASMGNATGRKDQDKSILQVKEENLGM-EQQDYFNLKA 457
Query: 675 IIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNS 734
I + N Y AC ++ C+KKV D +G +RCEKC+ YR I+ V + D TN
Sbjct: 458 TIVYIKQDNFAYPACMNEGCSKKVTDMGDGTWRCEKCDVSHPKPEYRYIMSVNVCDHTNQ 517
Query: 735 VWVTLFQNEAESILGVTAQEV-----GESTEDHPALKKALFTQYIFRLRAKLEHYNK 786
+W++ F + ++G++A ++ + T+ A ++A + FR RAK++ + +
Sbjct: 518 LWLSCFDDVGRVVMGMSADQLMALREEDETKMAQAFEEANCRKLNFRCRAKMDTFGE 574
Score = 202 bits (514), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 110/327 (33%), Positives = 192/327 (58%), Gaps = 11/327 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+F+++ NDYE++F T VI ED+ ++P V++ F ++ + E+ D +D++GV
Sbjct: 256 AKKQFTNLPNDYELTFERDT-VIEKAEDQ-SSVPQVRFNFCNIQELQEVEKDATVDIIGV 313
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D E+S + K+ K Y KR++TLVD + SV +T+WGK A FDA + V+A K +
Sbjct: 314 LKDVDEVSQIVSKSTGKPYEKRELTLVDDTNYSVRVTIWGKSATNFDAKPESVVAFKGTK 373
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTG-GMGGGAAG 183
VS+F GG++LSL S +S++PDIP+ H+L+GW+ S+ N F + G G
Sbjct: 374 VSDF-GGRSLSLLSSGTMSIDPDIPDAHRLKGWYDSSGRNDTFSSHNNMASMGNATGRKD 432
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ +++++ LGM ++ DY +++ I + N Y AC ++ C+KKV D +G +RC
Sbjct: 433 QDKSILQVKEENLGM-EQQDYFNLKATIVYIKQDNFAYPACMNEGCSKKVTDMGDGTWRC 491
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-----GESTEDHP 298
EKC+ YR I+ V + D TN +W++ F + ++G++A ++ + T+
Sbjct: 492 EKCDVSHPKPEYRYIMSVNVCDHTNQLWLSCFDDVGRVVMGMSADQLMALREEDETKMAQ 551
Query: 299 ALKKALFTQYIFRLRAKLEHYNGTKKI 325
A ++A + FR RAK++ + +++I
Sbjct: 552 AFEEANCRKLNFRCRAKMDTFGESQRI 578
>gi|389641383|ref|XP_003718324.1| replication factor-A protein 1 [Magnaporthe oryzae 70-15]
gi|351640877|gb|EHA48740.1| replication factor-A protein 1 [Magnaporthe oryzae 70-15]
gi|440466778|gb|ELQ36022.1| replication factor-A protein 1 [Magnaporthe oryzae Y34]
gi|440480262|gb|ELQ60936.1| replication factor-A protein 1 [Magnaporthe oryzae P131]
Length = 610
Score = 275 bits (704), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 170/527 (32%), Positives = 275/527 (52%), Gaps = 95/527 (18%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLATQ N +I D L IV++K Y + + +SVL++L+L +I+ + KI
Sbjct: 67 MLATQANHVIHDDQLQRGCIVRVKSY-----QANTVKGKSVLVLLDLEVIQ-SLGVHEKI 120
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTN-GSNGVHNNVAIPR-----QASAPV---------- 439
G P + +N+ TNT G +G + P ++ P
Sbjct: 121 GEPASIEAKAENT--------TNTTIGGSGFYGTKTEPDVKPQIRSQMPTRNTGGGGASH 172
Query: 440 ----VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATM 495
V +PI S+SPYQ+KWTIKARV+ K+ IR W+ A G GKLFS++LLDE+GEI+AT
Sbjct: 173 GPGNVNIYPIESISPYQHKWTIKARVSQKSDIRTWHKASGEGKLFSVNLLDETGEIKATG 232
Query: 496 FNDECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN 554
FND+C++F+D++++ +VYYIS C ++ A K+F+++ NDYE++F T I ED+ +
Sbjct: 233 FNDQCDKFYDILQEGQVYYISTPCRVQMAKKQFTNLPNDYELTFEDGTQ-IEKAEDQ-SS 290
Query: 555 MPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA 614
+P V++ F ++ + E+ D +DV+GV D A+++ +T K + K + KR++TLVD S
Sbjct: 291 VPQVRFNFCNIQELQEVEKDATVDVIGVLKDVADVTQITSKASGKFFDKRELTLVDDSGY 350
Query: 615 SVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG-------------------------- 648
SV MT+WGK A+ FDA ++ V+A K A+V +F G
Sbjct: 351 SVRMTIWGKTAQNFDAKSESVVAFKGAKVGDFGGRSLSLLSSGTMTVDPDIPEAHRLKGW 410
Query: 649 --------------------------NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGS 682
+L + ++++ LG+ D Y +++ + R
Sbjct: 411 FDSSGRNDNFSTFNSNSVAGATGRQDQILTIHKVKEDNLGVDDVV-YFALKATVVYIRQE 469
Query: 683 NTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQN 742
N Y +C ++ C+KKV D +G +RCEKC+ YR I+ V + D T +W++ F +
Sbjct: 470 NFAYPSCLNEGCSKKVTDLGDGSWRCEKCDVNHPRPEYRYIMSVNVNDHTGQLWLSCFDD 529
Query: 743 EAESILGVTAQEV-GESTEDHPALKK----ALFTQYIFRLRAKLEHY 784
I+G +A E+ E+ A + A + FR RAK++ +
Sbjct: 530 VGRIIMGKSADELMALKDENFEAFTREFENANCRKLSFRCRAKMDTF 576
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/326 (33%), Positives = 189/326 (57%), Gaps = 10/326 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+F+++ NDYE++F T I ED+ ++P V++ F ++ + E+ D +DV+GV
Sbjct: 261 AKKQFTNLPNDYELTFEDGTQ-IEKAEDQ-SSVPQVRFNFCNIQELQEVEKDATVDVIGV 318
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D A+++ +T K + K + KR++TLVD S SV MT+WGK A+ FDA ++ V+A K A+
Sbjct: 319 LKDVADVTQITSKASGKFFDKRELTLVDDSGYSVRMTIWGKTAQNFDAKSESVVAFKGAK 378
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGGGAAGN 184
V +F GG++LSL S ++++PDIPE H+L+GWF S+ N F + + G
Sbjct: 379 VGDF-GGRSLSLLSSGTMTVDPDIPEAHRLKGWFDSSGRNDNFSTFNSNSVAGATGRQDQ 437
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+L + ++++ LG+ D Y +++ + R N Y +C ++ C+KKV D +G +RCE
Sbjct: 438 ILTIHKVKEDNLGVDDVV-YFALKATVVYIRQENFAYPSCLNEGCSKKVTDLGDGSWRCE 496
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-GESTEDHPALKK- 302
KC+ YR I+ V + D T +W++ F + I+G +A E+ E+ A +
Sbjct: 497 KCDVNHPRPEYRYIMSVNVNDHTGQLWLSCFDDVGRIIMGKSADELMALKDENFEAFTRE 556
Query: 303 ---ALFTQYIFRLRAKLEHYNGTKKI 325
A + FR RAK++ + +++
Sbjct: 557 FENANCRKLSFRCRAKMDTFGDNQRV 582
>gi|443926858|gb|ELU45414.1| damaged DNA binding protein [Rhizoctonia solani AG-1 IA]
Length = 1077
Score = 275 bits (704), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 175/526 (33%), Positives = 261/526 (49%), Gaps = 102/526 (19%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
+MLAT+LND T + I+++ R A N V + K
Sbjct: 545 SMLATKLNDYFTSQDFTPKCIIRLTR---------CAMNLKV------------DDYSEK 583
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPV------------VQT 442
IGNP +N + + P+A + + + S P
Sbjct: 584 IGNP--VNFDKAENQAGAGPSAMDVDPAPAAPAPAPPKAVPSGPTSGPATNTLPAGFAPL 641
Query: 443 HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNR 502
HPI +LSPY NKWTI+ARVT K+ IR W+N RG GKLFS++L+DE+GEIRAT FN+ +
Sbjct: 642 HPIEALSPYSNKWTIRARVTQKSDIRTWSNQRGEGKLFSVNLMDETGEIRATGFNEVVDN 701
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
+ +E+ KVY+ S ++ A K+FS+++NDYE++ T IPC EDE +P V++ F
Sbjct: 702 LYSKLEEGKVYWFSKARVQLAKKQFSNLSNDYEIALERQTEAIPC-EDESA-VPKVQFNF 759
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
L + + D +DVLGV + + ++ K+ KT KRD+T+VD+S +SV MT+WG
Sbjct: 760 TELSQLDGVEKDAMVDVLGVVTEVKPIETINVKSTGKTVSKRDVTVVDKSGSSVRMTIWG 819
Query: 623 KEAETFDASNKPVIAVKAARVSEFQGNLLLM----------------------------- 653
K+AETF A N PVIA K +V +F G L +
Sbjct: 820 KQAETFQAENNPVIAFKGVKVGDFGGRTLSLVSSSTMTFHPDFPEAHALQGWYSSEGHSQ 879
Query: 654 ----------------------REIQDQQ------LGMGD--KADYCSVRGIIQVFRGSN 683
RE++ Q LGMG+ K D+ + R I + N
Sbjct: 880 TFKSQSTGGMGAGGGGVGTINRREMKTLQAVKEENLGMGEEGKTDFFTTRATIIHIKSDN 939
Query: 684 TTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNE 743
Y AC S +C+KKV + ++G +RCEKC K F YR I+ + + D+T + W+ +F +
Sbjct: 940 IMYPACGSDNCSKKVTEVHDG-WRCEKCEKTFPKPNYRYIMSLSVADYTQTAWLQVFNDP 998
Query: 744 AESILGVTAQEVGESTEDHP-----ALKKALFTQYIFRLRAKLEHY 784
E ILG+TA E+ E E++ A++KA ++F+ RA+ Y
Sbjct: 999 GELILGMTASELHELKEENEASYTTAIEKATSQTWMFQCRAQQSTY 1044
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 135/340 (39%), Positives = 206/340 (60%), Gaps = 21/340 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS+++NDYE++ T IPC EDE +P V++ F L + + D +DVLGV
Sbjct: 722 AKKQFSNLSNDYEIALERQTEAIPC-EDESA-VPKVQFNFTELSQLDGVEKDAMVDVLGV 779
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ + ++ K+ KT KRD+T+VD+S +SV MT+WGK+AETF A N PVIA K +
Sbjct: 780 VTEVKPIETINVKSTGKTVSKRDVTVVDKSGSSVRMTIWGKQAETFQAENNPVIAFKGVK 839
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRTGGMGGGAAGN 184
V +F GG+TLSL SS ++ +PD PE H LQGW+S++ +++ F+ SQ TGGMG G G
Sbjct: 840 VGDF-GGRTLSLVSSSTMTFHPDFPEAHALQGWYSSEGHSQTFK--SQSTGGMGAGGGGV 896
Query: 185 LLLMRE-------IQDQQLGMGD--KADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVID 235
+ R ++++ LGMG+ K D+ + R I + N Y AC S +C+KKV +
Sbjct: 897 GTINRREMKTLQAVKEENLGMGEEGKTDFFTTRATIIHIKSDNIMYPACGSDNCSKKVTE 956
Query: 236 QNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE 295
++G +RCEKC K F YR I+ + + D+T + W+ +F + E ILG+TA E+ E E
Sbjct: 957 VHDG-WRCEKCEKTFPKPNYRYIMSLSVADYTQTAWLQVFNDPGELILGMTASELHELKE 1015
Query: 296 DHP-----ALKKALFTQYIFRLRAKLEHYNGTKKIPDGVN 330
++ A++KA ++F+ RA+ Y ++ GVN
Sbjct: 1016 ENEASYTTAIEKATSQTWMFQCRAQQSTYQDQSRVRYGVN 1055
>gi|409079138|gb|EKM79500.1| hypothetical protein AGABI1DRAFT_114047 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 591
Score = 275 bits (703), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 174/516 (33%), Positives = 259/516 (50%), Gaps = 87/516 (16%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AMLATQ N ++ + +F++ I+R SS + + ++I+L L I+ E K
Sbjct: 62 AMLATQCNSLVETDQIKKFSVAAIER-----ASSNTVQGKRLVIVLSLRILGYPNE---K 113
Query: 395 IGNPQ---PLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAP---VVQTHPIVSL 448
I NPQ P+N+ D +++ + P A GS RQ + P V T PI +L
Sbjct: 114 INNPQALDPVNSGPDQNASAEAPPAPAPGGS----------RQVNKPNTSGVATFPIENL 163
Query: 449 SPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIE 508
SPYQN WTIKARVT K+ I+ W+N+RG GKLFS+ L+D+SGEI+AT FN + +E
Sbjct: 164 SPYQNNWTIKARVTQKSDIKNWSNSRGEGKLFSVTLMDDSGEIKATAFNSVVDELFPRLE 223
Query: 509 KDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI 568
KVYYIS + A KKFS++ NDYE++ ST + C+ E +P ++Y FV L+ +
Sbjct: 224 DSKVYYISKARVNFAKKKFSNVTNDYELTLERSTQITECH--ETTGLPEMRYTFVGLEKL 281
Query: 569 AEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF 628
++ D DV+GV D + +S +T +T +++ KR++TLVD+S S+ +TLWGK+AE+F
Sbjct: 282 ENLNKDAICDVIGVLKDISAVSEITARTTNRSFQKRELTLVDKSGCSIQLTLWGKQAESF 341
Query: 629 DASNKPVIAVKAARVSEFQG---------NLLLMREIQD--------------------- 658
+ A K +V +F G ++ L IQD
Sbjct: 342 TGEPGSIGAFKGVKVGDFGGVSLSTTPSTHIQLDPHIQDCYTLRGWWDSQGSDMSFQSKT 401
Query: 659 -------------------------QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD 693
++GMGDKAD +G I R N Y ACP +
Sbjct: 402 VIGGGGGLGIAFNRAQVRSLNEIKEAEVGMGDKADTFCCQGTIVHIRDQNLLYPACPGNN 461
Query: 694 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 753
CNKK + + + C+KC T YR IL + + DW+ W+ F A + G++
Sbjct: 462 CNKK-MSMSGDTWVCDKCGTNAETPEYRYILSMAVADWSGQAWLQGFNEAAVIVFGMSGN 520
Query: 754 EVGE---STED--HPALKKALFTQYIFRLRAKLEHY 784
E+ + ED + + KA Y F RAK + Y
Sbjct: 521 ELYDLKMRDEDKYNAVIHKAHCQTYNFACRAKKDSY 556
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 187/334 (55%), Gaps = 13/334 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A KKFS++ NDYE++ ST + C+E +P ++Y FV L+ + ++ D DV+GV
Sbjct: 238 AKKKFSNVTNDYELTLERSTQITECHE--TTGLPEMRYTFVGLEKLENLNKDAICDVIGV 295
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D + +S +T +T +++ KR++TLVD+S S+ +TLWGK+AE+F + A K +
Sbjct: 296 LKDISAVSEITARTTNRSFQKRELTLVDKSGCSIQLTLWGKQAESFTGEPGSIGAFKGVK 355
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAGN 184
V +F GG +LS + S+ + L+P I +C+ L+GW+ +Q ++ F+ + GG G G A N
Sbjct: 356 VGDF-GGVSLSTTPSTHIQLDPHIQDCYTLRGWWDSQGSDMSFQSKTVIGGGGGLGIAFN 414
Query: 185 LLLMR---EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMY 241
+R EI++ ++GMGDKAD +G I R N Y ACP +CNKK + + +
Sbjct: 415 RAQVRSLNEIKEAEVGMGDKADTFCCQGTIVHIRDQNLLYPACPGNNCNKK-MSMSGDTW 473
Query: 242 RCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE---STED-- 296
C+KC T YR IL + + DW+ W+ F A + G++ E+ + ED
Sbjct: 474 VCDKCGTNAETPEYRYILSMAVADWSGQAWLQGFNEAAVIVFGMSGNELYDLKMRDEDKY 533
Query: 297 HPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVN 330
+ + KA Y F RAK + Y +I G++
Sbjct: 534 NAVIHKAHCQTYNFACRAKKDSYEDRVRIRYGIS 567
>gi|408398028|gb|EKJ77164.1| hypothetical protein FPSE_02614 [Fusarium pseudograminearum CS3096]
Length = 607
Score = 275 bits (703), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 167/522 (31%), Positives = 270/522 (51%), Gaps = 83/522 (15%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLATQ N ++ D L +IK+Y + + +++L+IL++ +I+ I KI
Sbjct: 63 MLATQANHVVHDNKLVRGCFARIKQYTPNNLKG-----KNILVILDIEVIE-SLGIQEKI 116
Query: 396 GNPQPLNTNTDNSSTQQTPAA-----------TNTNGSNGVHNNVAIP-RQASAPVVQTH 443
G P + + Q++ A + T ++P R A +
Sbjct: 117 GEPSAFDAK---PAGQESAIAGGDFYGAKKEESKTQPQQFQEQQQSMPSRPAMHAGSNIY 173
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI LSP+ +KWTIKARVT K+ I+ W+ A G GKLFS++LLDESGEI+AT FND+C+
Sbjct: 174 PIEGLSPFAHKWTIKARVTAKSDIKTWHKATGEGKLFSVNLLDESGEIKATGFNDQCDAL 233
Query: 504 HDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
+D +++ VYYIS C ++ A K+FS++ NDYE++F TV+ ED+ N+P V++ F
Sbjct: 234 YDQLQEGSVYYISTPCRVQLAKKQFSNLPNDYELTFERD-TVVEKAEDQT-NVPQVRFNF 291
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
++ + + D +DV+GV + E+ +T K + + + KR++TLVD + SV +T+WG
Sbjct: 292 CSIQELQSVEKDNTVDVIGVLKEVGEIGDITSKKDGRPFQKRELTLVDDTGFSVRVTIWG 351
Query: 623 KEAETFDASNKPVIAVKAARVSEFQG---------------------------------- 648
K A +FDA+ + V+A K +VS+F G
Sbjct: 352 KNANSFDAAPESVVAFKGTKVSDFGGKSLSLLSSGTMTVDPDIPDAHRLKGWYDSAGRTD 411
Query: 649 -------------------NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKAC 689
+L + +++D+ LGM D+A Y +++ I + N Y AC
Sbjct: 412 TFATHQNMASVGSATGRKEDLKTIAQVKDENLGMDDQA-YYTIKATIVFVKQENFCYAAC 470
Query: 690 PSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILG 749
SQ CNKKV +G ++CEKCN YR IL + + D T+ W+T F + ++G
Sbjct: 471 LSQGCNKKVTQMPDGTWQCEKCNLSHEKPEYRYILSLNVADHTSHQWLTGFDDFGRQVMG 530
Query: 750 VTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYNK 786
TA E+ E E+ A ++A ++ FR RAK++++ +
Sbjct: 531 RTADEMMELKENDDTKLTAAFEEANCKKFTFRCRAKMDNFGE 572
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 115/327 (35%), Positives = 192/327 (58%), Gaps = 11/327 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ NDYE++F T V+ ED+ N+P V++ F ++ + + D +DV+GV
Sbjct: 254 AKKQFSNLPNDYELTFERDT-VVEKAEDQT-NVPQVRFNFCSIQELQSVEKDNTVDVIGV 311
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ E+ +T K + + + KR++TLVD + SV +T+WGK A +FDA+ + V+A K +
Sbjct: 312 LKEVGEIGDITSKKDGRPFQKRELTLVDDTGFSVRVTIWGKNANSFDAAPESVVAFKGTK 371
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGG--GAAG 183
VS+F GGK+LSL S ++++PDIP+ H+L+GW+ + T Q +G G
Sbjct: 372 VSDF-GGKSLSLLSSGTMTVDPDIPDAHRLKGWYDSAGRTDTFATHQNMASVGSATGRKE 430
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+L + +++D+ LGM D+A Y +++ I + N Y AC SQ CNKKV +G ++C
Sbjct: 431 DLKTIAQVKDENLGMDDQA-YYTIKATIVFVKQENFCYAACLSQGCNKKVTQMPDGTWQC 489
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----P 298
EKCN YR IL + + D T+ W+T F + ++G TA E+ E E+
Sbjct: 490 EKCNLSHEKPEYRYILSLNVADHTSHQWLTGFDDFGRQVMGRTADEMMELKENDDTKLTA 549
Query: 299 ALKKALFTQYIFRLRAKLEHYNGTKKI 325
A ++A ++ FR RAK++++ ++I
Sbjct: 550 AFEEANCKKFTFRCRAKMDNFGEAQRI 576
>gi|426196046|gb|EKV45975.1| hypothetical protein AGABI2DRAFT_193885 [Agaricus bisporus var.
bisporus H97]
Length = 591
Score = 275 bits (703), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 174/516 (33%), Positives = 259/516 (50%), Gaps = 87/516 (16%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AMLATQ N ++ + +F++ I+R SS + + ++I+L L I+ E K
Sbjct: 62 AMLATQCNSLVETDQIKKFSVAAIER-----ASSNTVQGKRLVIVLSLRILGYPNE---K 113
Query: 395 IGNPQ---PLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAP---VVQTHPIVSL 448
I NPQ P+N+ D +++ + P A GS RQ + P V T PI +L
Sbjct: 114 INNPQALDPVNSGPDQNASAEAPPAPAPGGS----------RQVNKPNTSGVATFPIENL 163
Query: 449 SPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIE 508
SPYQN WTIKARVT K+ I+ W+N+RG GKLFS+ L+D+SGEI+AT FN + +E
Sbjct: 164 SPYQNNWTIKARVTQKSDIKNWSNSRGEGKLFSVTLMDDSGEIKATAFNSVVDELFPRLE 223
Query: 509 KDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI 568
KVYYIS + A KKFS++ NDYE++ ST + C+ E +P ++Y FV L+ +
Sbjct: 224 DSKVYYISKARVNFAKKKFSNVTNDYELTLERSTQITECH--ETTGLPEMRYTFVGLEKL 281
Query: 569 AEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF 628
++ D DV+GV D + +S +T +T +++ KR++TLVD+S S+ +TLWGK+AE+F
Sbjct: 282 ENLNKDAICDVIGVLKDISAVSEITARTTNRSFQKRELTLVDKSGCSIQLTLWGKQAESF 341
Query: 629 DASNKPVIAVKAARVSEFQG---------NLLLMREIQD--------------------- 658
+ A K +V +F G ++ L IQD
Sbjct: 342 TGEPGSIGAFKGVKVGDFGGVSLSTTPSTHIQLDPHIQDCYTLRGWWDSQGSDMSFQSKT 401
Query: 659 -------------------------QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD 693
++GMGDKAD +G I R N Y ACP +
Sbjct: 402 VIGGGGGLGIAFNRAQVRSLNEIKEAEVGMGDKADTFCCQGTIVHIRDQNLLYPACPGNN 461
Query: 694 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 753
CNKK + + + C+KC T YR IL + + DW+ W+ F A + G++
Sbjct: 462 CNKK-MSMSGDTWVCDKCGTNAETPEYRYILSMAVADWSGQAWLQGFNEAAVIVFGMSGN 520
Query: 754 EVGE---STED--HPALKKALFTQYIFRLRAKLEHY 784
E+ + ED + + KA Y F RAK + Y
Sbjct: 521 ELYDLKMRDEDKYNAVIHKAHCQTYNFACRAKKDSY 556
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 187/334 (55%), Gaps = 13/334 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A KKFS++ NDYE++ ST + C+E +P ++Y FV L+ + ++ D DV+GV
Sbjct: 238 AKKKFSNVTNDYELTLERSTQITECHE--TTGLPEMRYTFVGLEKLENLNKDAICDVIGV 295
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D + +S +T +T +++ KR++TLVD+S S+ +TLWGK+AE+F + A K +
Sbjct: 296 LKDISAVSEITARTTNRSFQKRELTLVDKSGCSIQLTLWGKQAESFTGEPGSIGAFKGVK 355
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAGN 184
V +F GG +LS + S+ + L+P I +C+ L+GW+ +Q ++ F+ + GG G G A N
Sbjct: 356 VGDF-GGVSLSTTPSTHIQLDPHIQDCYTLRGWWDSQGSDMSFQSKTVIGGGGGLGIAFN 414
Query: 185 LLLMR---EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMY 241
+R EI++ ++GMGDKAD +G I R N Y ACP +CNKK + + +
Sbjct: 415 RAQVRSLNEIKEAEVGMGDKADTFCCQGTIVHIRDQNLLYPACPGNNCNKK-MSMSGDTW 473
Query: 242 RCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE---STED-- 296
C+KC T YR IL + + DW+ W+ F A + G++ E+ + ED
Sbjct: 474 VCDKCGTNAETPEYRYILSMAVADWSGQAWLQGFNEAAVIVFGMSGNELYDLKMRDEDKY 533
Query: 297 HPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVN 330
+ + KA Y F RAK + Y +I G++
Sbjct: 534 NAVIHKAHCQTYNFACRAKKDSYEDRVRIRYGIS 567
>gi|342877980|gb|EGU79393.1| hypothetical protein FOXB_10069 [Fusarium oxysporum Fo5176]
Length = 608
Score = 275 bits (703), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 166/520 (31%), Positives = 267/520 (51%), Gaps = 78/520 (15%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLATQ N ++ D L I +IK+Y + + +++L+IL++ +I+ + KI
Sbjct: 63 MLATQANHVVHDNKLVRGCIARIKQYTPNNLKG-----KNILVILDIEVIE-SLGVQEKI 116
Query: 396 GNPQPLNTNT----------DNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPI 445
G P +++ D ++ + T R A +PI
Sbjct: 117 GEPFAVDSKPAAQEGAIAGGDFYGVKKEESKTQPQQFQQQQQQSMPSRPAMHAGSNIYPI 176
Query: 446 VSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHD 505
LSP+ +KWTIKARVT+K+ I+ W+ A G GKLFS++LLDESGEI+AT FND+C+ F+D
Sbjct: 177 EGLSPFAHKWTIKARVTSKSDIKTWHKATGEGKLFSVNLLDESGEIKATGFNDQCDAFYD 236
Query: 506 MIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP 564
+++ VYYIS C + A K+FS++ NDYE++F TVI ED+ N+P V++ F
Sbjct: 237 RLQEGSVYYISTPCRVALAKKQFSNLPNDYELTFERD-TVIEKAEDQT-NVPQVRFNFCS 294
Query: 565 LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE 624
++ + + D +DV+GV + E+ +T K + + + KR++TLVD + SV +T+WGK
Sbjct: 295 IQELQSVEKDNTVDVIGVLKEVGEVGDITSKKDGRPFQKRELTLVDDTGFSVRVTIWGKS 354
Query: 625 AETFDASNKPVIAVKAARVSEFQG------------------------------------ 648
A +FDA + V+A K +VS+F G
Sbjct: 355 ANSFDAPPESVVAFKGTKVSDFGGKSLSLLSSGTMTVDPDIPDAHRLKGWYDSAGRNDTF 414
Query: 649 -----------------NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS 691
+L ++ +++D+ LGM D+A Y +++ I + N Y AC S
Sbjct: 415 ATHQNMASMGNATGRKEDLKIISQVKDENLGMDDQA-YYTIKATIVFVKQENFCYPACLS 473
Query: 692 QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVT 751
Q CNKKV +G + CEKC YR IL + + D T+ W++ F + I+G T
Sbjct: 474 QGCNKKVTQMPDGTWHCEKCAISHEKPEYRYILSLNVADHTSHQWLSCFDDSGRQIVGRT 533
Query: 752 AQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYNK 786
A E+ E E+ A ++A ++ FR RAK++++ +
Sbjct: 534 ADEMMELKENDDNKFMAAFEEANCKKFTFRCRAKMDNFGE 573
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 116/329 (35%), Positives = 190/329 (57%), Gaps = 11/329 (3%)
Query: 4 APANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVL 63
A A K+FS++ NDYE++F T VI ED+ N+P V++ F ++ + + D +DV+
Sbjct: 253 ALAKKQFSNLPNDYELTFERDT-VIEKAEDQT-NVPQVRFNFCSIQELQSVEKDNTVDVI 310
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKA 123
GV + E+ +T K + + + KR++TLVD + SV +T+WGK A +FDA + V+A K
Sbjct: 311 GVLKEVGEVGDITSKKDGRPFQKRELTLVDDTGFSVRVTIWGKSANSFDAPPESVVAFKG 370
Query: 124 ARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGG--GA 181
+VS+F GGK+LSL S ++++PDIP+ H+L+GW+ + Q MG G
Sbjct: 371 TKVSDF-GGKSLSLLSSGTMTVDPDIPDAHRLKGWYDSAGRNDTFATHQNMASMGNATGR 429
Query: 182 AGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMY 241
+L ++ +++D+ LGM D+A Y +++ I + N Y AC SQ CNKKV +G +
Sbjct: 430 KEDLKIISQVKDENLGMDDQA-YYTIKATIVFVKQENFCYPACLSQGCNKKVTQMPDGTW 488
Query: 242 RCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH---- 297
CEKC YR IL + + D T+ W++ F + I+G TA E+ E E+
Sbjct: 489 HCEKCAISHEKPEYRYILSLNVADHTSHQWLSCFDDSGRQIVGRTADEMMELKENDDNKF 548
Query: 298 -PALKKALFTQYIFRLRAKLEHYNGTKKI 325
A ++A ++ FR RAK++++ ++I
Sbjct: 549 MAAFEEANCKKFTFRCRAKMDNFGEAQRI 577
>gi|340522901|gb|EGR53134.1| replication factor A-like protein [Trichoderma reesei QM6a]
Length = 600
Score = 275 bits (702), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 172/528 (32%), Positives = 282/528 (53%), Gaps = 82/528 (15%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGVN MLATQ N +I D L + ++K+Y + + +++L+IL+L +
Sbjct: 53 MSDGVNYVQ-TMLATQANHVIHDNKLERGCLTRVKQY-----TPNNLKGKNILVILDLEV 106
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNV--------AIP-RQA 435
I+ + KIG+P L + + T A + G+ +V ++P R A
Sbjct: 107 IE-SLGVHEKIGDPVVLEPR----AAETTIAGNDFYGAKKEEQDVKPQMQQLQSMPSRSA 161
Query: 436 SAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATM 495
+ +PI +LSP+ +KWTIKARVT K+ I+ W+ G GKLFS++LLDESGEI+AT
Sbjct: 162 THSGANIYPIEALSPFSSKWTIKARVTFKSDIKTWHKPTGEGKLFSVNLLDESGEIKATG 221
Query: 496 FNDECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN 554
FND+C+ F+D++++ VYYIS+ C + A K+FS++ NDYE++F TVI ED+ N
Sbjct: 222 FNDQCDAFYDILQEGSVYYISSPCRVSLAKKQFSNLPNDYELAFERE-TVIEKAEDQT-N 279
Query: 555 MPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA 614
+P V++ F ++ + + D +DV+GV + E+S +T K + + + KR++TLVD +
Sbjct: 280 VPQVRFNFCTIQELQSVEKDSTVDVIGVLKEVGEVSEITSKKDGRPFQKRELTLVDDTGY 339
Query: 615 SVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM--------------------- 653
SV +T+WGK A +FDA+ + V+A K +VS+F G L +
Sbjct: 340 SVRVTIWGKTASSFDANPESVVAFKGTKVSDFGGKSLSLLSSGTMTVDPDIPDAYRLKGW 399
Query: 654 --------------------------REIQ------DQQLGMGDKADYCSVRGIIQVFRG 681
EI+ D+ LG+ D+A Y +++ I +
Sbjct: 400 YDSVGRTDTFATHQNLAGVAGATGRKEEIKTIAQVKDENLGVDDQA-YYTIKATIVFVKQ 458
Query: 682 SNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQ 741
+ Y AC +Q CNKKV +G ++CEKC+ + YR I+ + + D T+ W++ F
Sbjct: 459 DSFCYPACSNQGCNKKVTPMPDGTWQCEKCSVSHDKPDYRYIMQLNVADHTSHQWLSCFD 518
Query: 742 NEAESILGVTAQEVGESTEDHPALKKALF-----TQYIFRLRAKLEHY 784
+ I+G++A E+ E E+ A A F + +FR RAK++++
Sbjct: 519 DTGRIIVGMSANELMELKENDDAKFMAAFEAVNCKKLMFRCRAKMDNF 566
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/327 (33%), Positives = 195/327 (59%), Gaps = 11/327 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ NDYE++F T VI ED+ N+P V++ F ++ + + D +DV+GV
Sbjct: 250 AKKQFSNLPNDYELAFERET-VIEKAEDQT-NVPQVRFNFCTIQELQSVEKDSTVDVIGV 307
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ E+S +T K + + + KR++TLVD + SV +T+WGK A +FDA+ + V+A K +
Sbjct: 308 LKEVGEVSEITSKKDGRPFQKRELTLVDDTGYSVRVTIWGKTASSFDANPESVVAFKGTK 367
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGG--GAAG 183
VS+F GGK+LSL S ++++PDIP+ ++L+GW+ + T Q G+ G G
Sbjct: 368 VSDF-GGKSLSLLSSGTMTVDPDIPDAYRLKGWYDSVGRTDTFATHQNLAGVAGATGRKE 426
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ + +++D+ LG+ D+A Y +++ I + + Y AC +Q CNKKV +G ++C
Sbjct: 427 EIKTIAQVKDENLGVDDQA-YYTIKATIVFVKQDSFCYPACSNQGCNKKVTPMPDGTWQC 485
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
EKC+ + YR I+ + + D T+ W++ F + I+G++A E+ E E+ A A
Sbjct: 486 EKCSVSHDKPDYRYIMQLNVADHTSHQWLSCFDDTGRIIVGMSANELMELKENDDAKFMA 545
Query: 304 LF-----TQYIFRLRAKLEHYNGTKKI 325
F + +FR RAK++++ T+++
Sbjct: 546 AFEAVNCKKLMFRCRAKMDNFGDTQRV 572
>gi|46137213|ref|XP_390298.1| hypothetical protein FG10122.1 [Gibberella zeae PH-1]
Length = 607
Score = 275 bits (702), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 166/522 (31%), Positives = 270/522 (51%), Gaps = 83/522 (15%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLATQ N ++ D L +IK+Y + + +++L+IL++ +I+ I KI
Sbjct: 63 MLATQANHVVHDNKLVRGCFARIKQYTPNNLK-----GKNILVILDIEVIE-SLGIQEKI 116
Query: 396 GNPQPLNTNTDNSSTQQTPAA-----------TNTNGSNGVHNNVAIP-RQASAPVVQTH 443
G P + + Q++ A + T ++P R A +
Sbjct: 117 GEPSAFDAK---PAGQESAIAGGDFYGVKKEESKTQPQQFQQQQQSMPSRPAMHAGSNIY 173
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI LSP+ +KWTIKARVT K+ I+ W+ A G GKLFS++LLDESGEI+AT FND+C+
Sbjct: 174 PIEGLSPFAHKWTIKARVTAKSDIKTWHKATGEGKLFSVNLLDESGEIKATGFNDQCDAL 233
Query: 504 HDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
+D +++ VYYIS C ++ A K+FS++ NDYE++F TV+ ED+ N+P V++ F
Sbjct: 234 YDQLQEGSVYYISTPCRVQLAKKQFSNLPNDYELTFERD-TVVEKAEDQT-NVPQVRFNF 291
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
++ + + D +DV+GV + E+ +T K + + + KR++TLVD + SV +T+WG
Sbjct: 292 CSIQELQSVEKDNTVDVIGVLKEVGEIGDITSKKDGRPFQKRELTLVDDTGFSVRVTIWG 351
Query: 623 KEAETFDASNKPVIAVKAARVSEFQG---------------------------------- 648
K A +FDA+ + V+A K +VS+F G
Sbjct: 352 KNANSFDAAPESVVAFKGTKVSDFGGKSLSLLSSGTMTVDPDIPDAHRLKGWYDSAGRTD 411
Query: 649 -------------------NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKAC 689
+L + +++D+ LGM D+A Y +++ I + N Y AC
Sbjct: 412 TFATHQNMASVGSATGRKEDLKTIAQVKDENLGMDDQA-YYTIKATIVFVKQENFCYAAC 470
Query: 690 PSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILG 749
SQ CNKKV +G ++CEKCN YR +L + + D T+ W+T F + ++G
Sbjct: 471 LSQGCNKKVTQMPDGTWQCEKCNLSHEKPEYRYVLSLNVADHTSHQWLTGFDDFGRQVMG 530
Query: 750 VTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYNK 786
TA E+ E E+ A ++A ++ FR RAK++++ +
Sbjct: 531 RTADEMMELKENDDTKLTAAFEEANCKKFTFRCRAKMDNFGE 572
Score = 218 bits (556), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 114/327 (34%), Positives = 192/327 (58%), Gaps = 11/327 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ NDYE++F T V+ ED+ N+P V++ F ++ + + D +DV+GV
Sbjct: 254 AKKQFSNLPNDYELTFERDT-VVEKAEDQT-NVPQVRFNFCSIQELQSVEKDNTVDVIGV 311
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ E+ +T K + + + KR++TLVD + SV +T+WGK A +FDA+ + V+A K +
Sbjct: 312 LKEVGEIGDITSKKDGRPFQKRELTLVDDTGFSVRVTIWGKNANSFDAAPESVVAFKGTK 371
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGG--GAAG 183
VS+F GGK+LSL S ++++PDIP+ H+L+GW+ + T Q +G G
Sbjct: 372 VSDF-GGKSLSLLSSGTMTVDPDIPDAHRLKGWYDSAGRTDTFATHQNMASVGSATGRKE 430
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+L + +++D+ LGM D+A Y +++ I + N Y AC SQ CNKKV +G ++C
Sbjct: 431 DLKTIAQVKDENLGMDDQA-YYTIKATIVFVKQENFCYAACLSQGCNKKVTQMPDGTWQC 489
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----P 298
EKCN YR +L + + D T+ W+T F + ++G TA E+ E E+
Sbjct: 490 EKCNLSHEKPEYRYVLSLNVADHTSHQWLTGFDDFGRQVMGRTADEMMELKENDDTKLTA 549
Query: 299 ALKKALFTQYIFRLRAKLEHYNGTKKI 325
A ++A ++ FR RAK++++ ++I
Sbjct: 550 AFEEANCKKFTFRCRAKMDNFGEAQRI 576
>gi|327283810|ref|XP_003226633.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Anolis carolinensis]
Length = 607
Score = 274 bits (700), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 146/335 (43%), Positives = 210/335 (62%), Gaps = 22/335 (6%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
DGVN S MLATQLN ++ + +L+ TI QI R+IV+ + G R V+I++++ +++
Sbjct: 47 DGVNTLSSFMLATQLNSMVDEQSLAVNTICQINRFIVNTLKDG----RKVVIVMDMEVLR 102
Query: 387 PGTEIGFKIGNP------QPL-------NTNTDNSSTQQTPAATNTNGSNGVHNNVAIPR 433
PG KIGNP QPL + + P ++ P
Sbjct: 103 PGDASAAKIGNPVQYVEVQPLPAVPGAASAVASAEEEHRGPPPPKMPNKGPASQFLSTPG 162
Query: 434 QASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRA 493
+ A VV PI SL+PYQ+KWTI ARVT K IR W+N+RG GKLFSI+L+DESGEIRA
Sbjct: 163 GSQAKVV---PIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSIELVDESGEIRA 219
Query: 494 TMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVG 553
T FND+ ++F+ +IE +KVYY S LK ANK+++S+ NDYE++F + T+VIPC ++
Sbjct: 220 TAFNDQVDKFYPLIEMNKVYYFSKGQLKVANKQYTSVKNDYEITFINDTSVIPC--EDAQ 277
Query: 554 NMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ 613
++PSV++ FV + + S D +DV+GVC E++ +T KT + KRD+ LVD S
Sbjct: 278 HLPSVQFDFVSIAELERTSKDAIVDVIGVCKAYEEVTKLTMKTTNREVSKRDLHLVDSSG 337
Query: 614 ASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG 648
V++ LWG+EA+ FD S +PV+A+K ARVS+F G
Sbjct: 338 KMVSVALWGQEADNFDGSRQPVVAIKGARVSDFGG 372
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 142/326 (43%), Positives = 206/326 (63%), Gaps = 14/326 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+++S+ NDYE++F + T+VIPC ++ ++PSV++ FV + + S D +DV+GV
Sbjct: 249 ANKQYTSVKNDYEITFINDTSVIPC--EDAQHLPSVQFDFVSIAELERTSKDAIVDVIGV 306
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C E++ +T KT + KRD+ LVD S V++ LWG+EA+ FD S +PV+A+K AR
Sbjct: 307 CKAYEEVTKLTMKTTNREVSKRDLHLVDSSGKMVSVALWGQEADNFDGSRQPVVAIKGAR 366
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ------TNTRFEPVSQRTGGMGG 179
VS+F GG++LS+ SS L +NPD PE +L+GWF +Q ++ G GG
Sbjct: 367 VSDF-GGRSLSVLSSSTLVVNPDRPEAFRLRGWFDSQGKHLETSSISNGWSGGSGGSGGG 425
Query: 180 GAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNG 239
G+ N +RE + LG G+KADY S G + R YKACPS DCNKK++D+ NG
Sbjct: 426 GSGPNWKTLRESKTGNLGQGEKADYYSCIGTVIYLRKEKCLYKACPSPDCNKKLVDEQNG 485
Query: 240 MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE--STEDH 297
+YRCEKCN E F +R+IL V I D+ + WVT FQ AE+ILG A +GE T++H
Sbjct: 486 LYRCEKCNLETPNFKHRMILQVNIADFQDQQWVTCFQEAAETILGQNATYLGELKETDEH 545
Query: 298 P---ALKKALFTQYIFRLRAKLEHYN 320
++K+ F + FR+RAK+E +N
Sbjct: 546 AFNSIIEKSFFATFEFRVRAKMEMFN 571
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 89/142 (62%), Gaps = 5/142 (3%)
Query: 649 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 708
N +RE + LG G+KADY S G + R YKACPS DCNKK++D+ NG+YRC
Sbjct: 430 NWKTLRESKTGNLGQGEKADYYSCIGTVIYLRKEKCLYKACPSPDCNKKLVDEQNGLYRC 489
Query: 709 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE--STEDHP--- 763
EKCN E F +R+IL V I D+ + WVT FQ AE+ILG A +GE T++H
Sbjct: 490 EKCNLETPNFKHRMILQVNIADFQDQQWVTCFQEAAETILGQNATYLGELKETDEHAFNS 549
Query: 764 ALKKALFTQYIFRLRAKLEHYN 785
++K+ F + FR+RAK+E +N
Sbjct: 550 IIEKSFFATFEFRVRAKMEMFN 571
>gi|225557692|gb|EEH05977.1| replication factor [Ajellomyces capsulatus G186AR]
Length = 606
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 170/519 (32%), Positives = 262/519 (50%), Gaps = 78/519 (15%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLATQ N +T G L V++K + + V + +LIIL+L ++ KI
Sbjct: 61 MLATQANHYVTSGQLVRGCFVRLKSFQANMVKG-----KRILIILDLEVLDRLGICEKKI 115
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQ-----------THP 444
G+PQPL+ + + P ++NG G P+Q Q +P
Sbjct: 116 GDPQPLDAKQEEQD-KTIPTTISSNGFYGSRGPQQPPQQPPQQPAQRSAAAATAHANIYP 174
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
I +LSPY +KWTIKAR TNK+ I+ W+N G GKLFS++LLD+SGEIRAT F D+C+ +
Sbjct: 175 IEALSPYSHKWTIKARCTNKSAIKTWHNKNGEGKLFSVNLLDDSGEIRATAFKDQCDSLY 234
Query: 505 DMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+ E+ VYYIS+ C ++ A K F+++NN+YE++F T V +E ++P +++ F
Sbjct: 235 GVFEEGCVYYISSPCRVQMAKKAFNNLNNEYELTFEKDTIVEKA--EEQNDVPQIRFNFT 292
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
+ + + IDV+GV D ELS + KT K Y KRD+TLVD + SV +T+WG
Sbjct: 293 NIANLQSVEAGTTIDVIGVLKDVGELSQILSKTTSKPYDKRDLTLVDNTGYSVRLTVWGN 352
Query: 624 EAETFDASNKPVIAVKAARVSEFQGN---------LLLMREIQDQQ-------------- 660
A+ FD+ + V+A K +VS+F G + + +I+D
Sbjct: 353 IAKEFDSVPESVVAFKGVKVSDFNGRSLSLLSSGSMTVDPDIEDAHKLKGWYDAQGRSET 412
Query: 661 ----------LGMGDKA--------------------DYCSVRGIIQVFRGSNTTYKACP 690
G GD+A DY SV+ + + Y AC
Sbjct: 413 FASHDSMNNAAGFGDRASSFKTIVQVHEGNLGMSEKPDYFSVKATVVYVKQDTMAYPACL 472
Query: 691 SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGV 750
+ CNKKV+ NG +RCE+C++ F YR IL V + D T ++W++ F + ILG
Sbjct: 473 TDKCNKKVLQDENGQWRCERCDQSFPHPEYRYILSVNVCDHTGALWLSCFDEVGKIILGT 532
Query: 751 TAQEVGESTED-----HPALKKALFTQYIFRLRAKLEHY 784
+A E+ E E+ +++A + F RAK++++
Sbjct: 533 SANELMELKENDERAYEELVQRANCRAWNFNCRAKMDNF 571
Score = 196 bits (499), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 109/327 (33%), Positives = 181/327 (55%), Gaps = 10/327 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K F+++NN+YE++F T V +E ++P +++ F + + + IDV+GV
Sbjct: 254 AKKAFNNLNNEYELTFEKDTIVEKA--EEQNDVPQIRFNFTNIANLQSVEAGTTIDVIGV 311
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D ELS + KT K Y KRD+TLVD + SV +T+WG A+ FD+ + V+A K +
Sbjct: 312 LKDVGELSQILSKTTSKPYDKRDLTLVDNTGYSVRLTVWGNIAKEFDSVPESVVAFKGVK 371
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRTGGMG-GGAAG 183
VS+F G++LSL S ++++PDI + HKL+GW+ Q + F G G A
Sbjct: 372 VSDF-NGRSLSLLSSGSMTVDPDIEDAHKLKGWYDAQGRSETFASHDSMNNAAGFGDRAS 430
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ + ++ + LGM +K DY SV+ + + Y AC + CNKKV+ NG +RC
Sbjct: 431 SFKTIVQVHEGNLGMSEKPDYFSVKATVVYVKQDTMAYPACLTDKCNKKVLQDENGQWRC 490
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED-----HP 298
E+C++ F YR IL V + D T ++W++ F + ILG +A E+ E E+
Sbjct: 491 ERCDQSFPHPEYRYILSVNVCDHTGALWLSCFDEVGKIILGTSANELMELKENDERAYEE 550
Query: 299 ALKKALFTQYIFRLRAKLEHYNGTKKI 325
+++A + F RAK++++ +++
Sbjct: 551 LVQRANCRAWNFNCRAKMDNFQDQQRV 577
>gi|134110990|ref|XP_775959.1| hypothetical protein CNBD3660 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258625|gb|EAL21312.1| hypothetical protein CNBD3660 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 612
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 174/537 (32%), Positives = 268/537 (49%), Gaps = 102/537 (18%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AMLATQLN + + + ++V++ + V+ VS R +LIIL L ++ P T+ K
Sbjct: 59 AMLATQLNHFVESKQVDKHSLVKVVNFSVNSVS-----GRKLLIILALEVV-PWTDE--K 110
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNT-------------------NGSNGVHNNVAIPRQA 435
IGNP ++ +S PA ++ N S+ N P+
Sbjct: 111 IGNPVSVDQAKSGASASAQPAGAHSAPLQSATAPAPARAQVPGRNASSARPGNTK-PKGD 169
Query: 436 SAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATM 495
P+ +PI LSPYQN+WTIKARVT K+ IR ++N RG GKLF++ +DE+GEIRAT
Sbjct: 170 LGPL---YPIEGLSPYQNRWTIKARVTQKSDIRHYSNQRGDGKLFNVTFMDETGEIRATG 226
Query: 496 FNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNM 555
FND + F++++E KV+++S + A K+FS++NN+YE+ F T + PC ++ V
Sbjct: 227 FNDAVDNFYNLLEVGKVFFVSRARINIAKKQFSNVNNEYEIMFERDTEIEPCADESV--- 283
Query: 556 PSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQAS 615
P VKY F + + E+ D+ DV+GV + EL SVT + K + KR++ LVDQS S
Sbjct: 284 PQVKYNFKGIGDLGELQKDDVCDVIGVVREVGELGSVTSRATNKPFAKRELQLVDQSGQS 343
Query: 616 VTMTLWGKEAET-----------------------------------------------F 628
V +TLWGK+AET F
Sbjct: 344 VRLTLWGKQAETFQADDQPVIAFKGVKVGDFGGRSLSMFSNATMTINPDIPEAHSLRGWF 403
Query: 629 DAS--NKPVIAVKAARVSEFQGN-----------LLLMREIQDQQLGMGDKADYCSVRGI 675
DA NK A A V + N L + +++D+QLGM +K D+ S
Sbjct: 404 DAEGHNKHFTAYTTASVGDSAINTAAGAATRPAELKTIAQVKDEQLGMSEKTDFFSTEAT 463
Query: 676 IQVFRGSNTTYKACPSQD-CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNS 734
+ + +Y AC + D C KKV++ +G + CEKC + ++ +R IL + + D+T
Sbjct: 464 VAFIKKDPFSYPACANPDNCAKKVVEDGSGWW-CEKCQRRWDEPIHRYILSMNVMDYTGQ 522
Query: 735 VWVTLFQNEAESILGVTAQEV------GESTEDHPALKKALFTQYIFRLRAKLEHYN 785
W+T F AE I+G++A ++ G + KA Y+F++ AK + +N
Sbjct: 523 FWMTAFNETAEQIMGISANDLMKLKNEGNDLDYDVHFAKATARTYVFQMMAKQDSFN 579
Score = 226 bits (575), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 192/336 (57%), Gaps = 21/336 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++NN+YE+ F T + PC ++ V P VKY F + + E+ D+ DV+GV
Sbjct: 254 AKKQFSNVNNEYEIMFERDTEIEPCADESV---PQVKYNFKGIGDLGELQKDDVCDVIGV 310
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ EL SVT + K + KR++ LVDQS SV +TLWGK+AETF A ++PVIA K +
Sbjct: 311 VREVGELGSVTSRATNKPFAKRELQLVDQSGQSVRLTLWGKQAETFQADDQPVIAFKGVK 370
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGG-----MGG 179
V +F GG++LS+ ++ +++NPDIPE H L+GWF + N F + + G
Sbjct: 371 VGDF-GGRSLSMFSNATMTINPDIPEAHSLRGWFDAEGHNKHFTAYTTASVGDSAINTAA 429
Query: 180 GAA---GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD-CNKKVID 235
GAA L + +++D+QLGM +K D+ S + + +Y AC + D C KKV++
Sbjct: 430 GAATRPAELKTIAQVKDEQLGMSEKTDFFSTEATVAFIKKDPFSYPACANPDNCAKKVVE 489
Query: 236 QNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV----- 290
+G + CEKC + ++ +R IL + + D+T W+T F AE I+G++A ++
Sbjct: 490 DGSGWW-CEKCQRRWDEPIHRYILSMNVMDYTGQFWMTAFNETAEQIMGISANDLMKLKN 548
Query: 291 -GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
G + KA Y+F++ AK + +N ++
Sbjct: 549 EGNDLDYDVHFAKATARTYVFQMMAKQDSFNDQVRV 584
>gi|295674419|ref|XP_002797755.1| replication factor-A protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280405|gb|EEH35971.1| replication factor-A protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 603
Score = 273 bits (698), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 169/518 (32%), Positives = 266/518 (51%), Gaps = 75/518 (14%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLATQ N +T G L V++K + + V + +LI+L+L I+ KI
Sbjct: 61 MLATQANHFVTSGHLVRGCFVRLKSFQANLVK-----GKRILIVLDLEILDRLGVCEKKI 115
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIP----RQASAPV---VQTHPIVSL 448
G+PQPL+ + + P +TNG G P +++SA +PI +L
Sbjct: 116 GDPQPLDMKQEEQD-KSLPTTISTNGFYGSRAPQQAPQQPAKRSSASTTAYANIYPIEAL 174
Query: 449 SPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIE 508
SPY +KWTIKAR TNK+ I+ W+N G G+LFS++LLD+SGEIRAT F D+C+ + + E
Sbjct: 175 SPYSHKWTIKARCTNKSEIKTWHNKNGEGRLFSVNLLDDSGEIRATAFKDQCDALYGVFE 234
Query: 509 KDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKT 567
+ VYYIS+ C ++ A K FS++NN+YE++F T V +E ++P +++ F +
Sbjct: 235 EGSVYYISSPCRVQIAKKAFSNLNNEYELTFEKDTVVE--KAEEQNDVPQIRFNFTNIAN 292
Query: 568 IAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET 627
+ I P IDV+GV D E S + KT K Y KRD+TLVD + SV +T+WG A+
Sbjct: 293 LQTIEPGTTIDVIGVLKDVGESSQILSKTTSKPYDKRDLTLVDNTGYSVRLTVWGNAAKD 352
Query: 628 FDASNKPVIAVKAARVSEF---------QGNLLLMREIQDQQ------------------ 660
FD+ + V+A K +VS+F G++ + +I+D
Sbjct: 353 FDSMPESVVAFKGVKVSDFGGRSLSLLSSGSMTVDPDIEDAHKLKGWYEAQGRSETFASH 412
Query: 661 ------LGMGD---------------------KADYCSVRGIIQVFRGSNTTYKACPSQD 693
+G GD K DY S++ + + Y AC +
Sbjct: 413 ESISGAVGSGDRRANSFKTIAQVQEENLGMSEKPDYFSLKATVVYVKQDTMAYPACLTDK 472
Query: 694 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 753
CNKKV+ G +RCE+C++ F YR IL V + D T ++W++ F +++LG++A
Sbjct: 473 CNKKVLQDETGRWRCERCDQSFPRPEYRYILSVNVCDHTGALWLSCFDEVGKALLGISAN 532
Query: 754 EVGESTED-----HPALKKALFTQYIFRLRAKLEHYNK 786
E+ E ++ ++KA + F RAK++ + +
Sbjct: 533 EIMELKDNDERAYEELVQKANCRAWNFNCRAKMDSFQE 570
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 110/328 (33%), Positives = 186/328 (56%), Gaps = 11/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K FS++NN+YE++F T V +E ++P +++ F + + I P IDV+GV
Sbjct: 250 AKKAFSNLNNEYELTFEKDTVVE--KAEEQNDVPQIRFNFTNIANLQTIEPGTTIDVIGV 307
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D E S + KT K Y KRD+TLVD + SV +T+WG A+ FD+ + V+A K +
Sbjct: 308 LKDVGESSQILSKTTSKPYDKRDLTLVDNTGYSVRLTVWGNAAKDFDSMPESVVAFKGVK 367
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRTGGMGGG--AA 182
VS+F G ++LSL S ++++PDI + HKL+GW+ Q + F +G +G G A
Sbjct: 368 VSDFGG-RSLSLLSSGSMTVDPDIEDAHKLKGWYEAQGRSETFASHESISGAVGSGDRRA 426
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
+ + ++Q++ LGM +K DY S++ + + Y AC + CNKKV+ G +R
Sbjct: 427 NSFKTIAQVQEENLGMSEKPDYFSLKATVVYVKQDTMAYPACLTDKCNKKVLQDETGRWR 486
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED-----H 297
CE+C++ F YR IL V + D T ++W++ F +++LG++A E+ E ++
Sbjct: 487 CERCDQSFPRPEYRYILSVNVCDHTGALWLSCFDEVGKALLGISANEIMELKDNDERAYE 546
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
++KA + F RAK++ + +++
Sbjct: 547 ELVQKANCRAWNFNCRAKMDSFQEQQRV 574
>gi|325095428|gb|EGC48738.1| replication factor A 1 [Ajellomyces capsulatus H88]
Length = 602
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 170/515 (33%), Positives = 262/515 (50%), Gaps = 74/515 (14%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
ML TQ N +T G L V++K + + + + +LII +L ++ KI
Sbjct: 61 MLGTQANHYVTSGQLVRGCFVRLKSFQANMIKG-----KRILIIFDLEVLDRLGICEKKI 115
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNG---SNGVHNNVAIPRQASAPVVQT----HPIVSL 448
G+PQPL+T + + P ++NG S G P Q SA +PI +L
Sbjct: 116 GDPQPLDTKQEEQD-KTIPTTISSNGFYGSRGPQQPPQQPAQRSAAAATAHANIYPIEAL 174
Query: 449 SPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIE 508
SPY +KWTIKAR TNK+ I+ W+N G GKLFS++LLD+SGEIRAT F D+C+ + + E
Sbjct: 175 SPYSHKWTIKARCTNKSAIKTWHNKNGEGKLFSVNLLDDSGEIRATAFKDQCDSLYGVFE 234
Query: 509 KDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKT 567
+ VYYIS+ C ++ A K F+++NN+YE++F T V +E ++P +++ F +
Sbjct: 235 EGCVYYISSPCRVQMAKKAFNNLNNEYELTFEKDTIVEKA--EEQNDVPQIRFNFTNIAN 292
Query: 568 IAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET 627
+ + IDV+GV D ELS + KT K Y KRD+TLVD + SV +T+WG A+
Sbjct: 293 LQSVEAGTTIDVIGVLKDVGELSQILSKTTSKPYDKRDLTLVDNTGYSVRLTVWGNIAKE 352
Query: 628 FDASNKPVIAVKAARVSEFQGN---------LLLMREIQDQQ------------------ 660
FD+ + V+A K +VS+F G + + +I+D
Sbjct: 353 FDSVPESVVAFKGVKVSDFNGRSLSLLSSGSMTVDPDIEDAHKLKGWYDAQGRSETFASH 412
Query: 661 ------LGMGDKA--------------------DYCSVRGIIQVFRGSNTTYKACPSQDC 694
G GD+A DY SV+ + + Y AC + C
Sbjct: 413 DSMNNAAGFGDRASSFKTIVQVHEGNLGMSEKPDYFSVKATVVYVKQDTMAYPACLTDKC 472
Query: 695 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 754
NKKV+ NG +RCE+C++ F YR IL V + D T ++W++ F + ILG +A E
Sbjct: 473 NKKVLQDENGQWRCERCDQSFPHPEYRYILSVNVCDHTGALWLSCFDEVGKIILGTSANE 532
Query: 755 VGESTED-----HPALKKALFTQYIFRLRAKLEHY 784
+ E E+ +++A + F RAK++++
Sbjct: 533 LMELKENDERAYEELVQRANCRAWNFNCRAKMDNF 567
Score = 196 bits (498), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 109/327 (33%), Positives = 181/327 (55%), Gaps = 10/327 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K F+++NN+YE++F T V +E ++P +++ F + + + IDV+GV
Sbjct: 250 AKKAFNNLNNEYELTFEKDTIVEKA--EEQNDVPQIRFNFTNIANLQSVEAGTTIDVIGV 307
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D ELS + KT K Y KRD+TLVD + SV +T+WG A+ FD+ + V+A K +
Sbjct: 308 LKDVGELSQILSKTTSKPYDKRDLTLVDNTGYSVRLTVWGNIAKEFDSVPESVVAFKGVK 367
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRTGGMG-GGAAG 183
VS+F G++LSL S ++++PDI + HKL+GW+ Q + F G G A
Sbjct: 368 VSDF-NGRSLSLLSSGSMTVDPDIEDAHKLKGWYDAQGRSETFASHDSMNNAAGFGDRAS 426
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ + ++ + LGM +K DY SV+ + + Y AC + CNKKV+ NG +RC
Sbjct: 427 SFKTIVQVHEGNLGMSEKPDYFSVKATVVYVKQDTMAYPACLTDKCNKKVLQDENGQWRC 486
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED-----HP 298
E+C++ F YR IL V + D T ++W++ F + ILG +A E+ E E+
Sbjct: 487 ERCDQSFPHPEYRYILSVNVCDHTGALWLSCFDEVGKIILGTSANELMELKENDERAYEE 546
Query: 299 ALKKALFTQYIFRLRAKLEHYNGTKKI 325
+++A + F RAK++++ +++
Sbjct: 547 LVQRANCRAWNFNCRAKMDNFQDQQRV 573
>gi|358334004|dbj|GAA32083.2| replication factor A1 [Clonorchis sinensis]
Length = 551
Score = 273 bits (697), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 172/532 (32%), Positives = 263/532 (49%), Gaps = 107/532 (20%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLATQLN +I +G L T+V+IK+Y VLI+L++ ++ +
Sbjct: 1 MLATQLNHLIENGNLVNDTVVRIKKY--------------VLIVLDVELLGVQHDT---- 42
Query: 396 GNPQPLNTNTDNSSTQQTPAA------------TNTNGSNGVHNNVAIPRQASAPVVQTH 443
++ N S + PAA ++T G H + P + + +
Sbjct: 43 -----VSENVSAPSAVKPPAAMTPTSTPVTPPKSSTGPFPGGHPST--PGTPGSGMPKVF 95
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI SL+PYQN+WT++ARV+ K+ IR WN GKLF+ L+DESGEIR T FN E ++F
Sbjct: 96 PIQSLNPYQNRWTVRARVSQKSSIRTWNKQGRDGKLFNFTLVDESGEIRVTAFNAEVDKF 155
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
DMIE +K YY++ LK ANK+F++ NNDYEM+ + +IPC ++++ +P + FV
Sbjct: 156 FDMIEVNKAYYVTRANLKAANKQFNTTNNDYEMTLNADSQIIPCEDEDITALPETHFNFV 215
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
+ + P +DV+GV D +E+ ++ K +Q+ KR++ LVD S+ V +TLWG
Sbjct: 216 SIGKLDTCEPGSFVDVVGVVHDTSEVQTIMAKASQRELRKRELGLVDSSRCLVRLTLWGD 275
Query: 624 EAETFDASNKPVIAVKAARVSEF--------------------------------QGNLL 651
EA +FD S PVI VK A+VS+F +G+ +
Sbjct: 276 EAASFDGSQHPVIVVKGAKVSDFNGRSLSVSSTSSVLVSPTNVPEAIRLKGWYELEGHKV 335
Query: 652 LMREIQDQQLGMGDKADYC---SVRG------IIQVFRGSNT-TYKACPSQDCNKKVI-- 699
+ + LG G D S G +IQ + S T+ C V+
Sbjct: 336 SFDTYKSEMLGSGSGGDLAGPGSTAGCLGGWNLIQDVKASGVGTHAKADFFTCKSTVVFL 395
Query: 700 DQNNGMYR--------------------CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTL 739
+ N MY+ CEKC +E N +RL+L I D T +W+T
Sbjct: 396 KKENFMYQACPTEGCNKKVIDTGHGMYRCEKCGRETNHCKWRLLLAAKIADLTGDLWITC 455
Query: 740 FQNEAESILGVTAQEVG--ESTEDHPALKK----ALFTQYIFRLRAKLEHYN 785
FQ AE +LG +A +G + ++D L++ A+F ++FRLRAK++ YN
Sbjct: 456 FQEAAEQLLGQSADSLGAMKESQDEAQLERIFLNAVFNSWVFRLRAKVDRYN 507
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 122/333 (36%), Positives = 195/333 (58%), Gaps = 18/333 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F++ NNDYEM+ + +IPC ++++ +P + FV + + P +DV+GV
Sbjct: 175 ANKQFNTTNNDYEMTLNADSQIIPCEDEDITALPETHFNFVSIGKLDTCEPGSFVDVVGV 234
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D +E+ ++ K +Q+ KR++ LVD S+ V +TLWG EA +FD S PVI VK A+
Sbjct: 235 VHDTSEVQTIMAKASQRELRKRELGLVDSSRCLVRLTLWGDEAASFDGSQHPVIVVKGAK 294
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT------RFEPVSQRTGG-MG 178
VS+F G S SSVL ++PE +L+GW+ + + + E + +GG +
Sbjct: 295 VSDFNGRSLSVSSTSSVLVSPTNVPEAIRLKGWYELEGHKVSFDTYKSEMLGSGSGGDLA 354
Query: 179 G-----GAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKV 233
G G G L+++++ +G KAD+ + + + + N Y+ACP++ CNKKV
Sbjct: 355 GPGSTAGCLGGWNLIQDVKASGVGTHAKADFFTCKSTVVFLKKENFMYQACPTEGCNKKV 414
Query: 234 IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG-- 291
ID +GMYRCEKC +E N +RL+L I D T +W+T FQ AE +LG +A +G
Sbjct: 415 IDTGHGMYRCEKCGRETNHCKWRLLLAAKIADLTGDLWITCFQEAAEQLLGQSADSLGAM 474
Query: 292 ESTEDHPALKK----ALFTQYIFRLRAKLEHYN 320
+ ++D L++ A+F ++FRLRAK++ YN
Sbjct: 475 KESQDEAQLERIFLNAVFNSWVFRLRAKVDRYN 507
>gi|388581219|gb|EIM21529.1| replication factor-a protein [Wallemia sebi CBS 633.66]
Length = 599
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 174/518 (33%), Positives = 264/518 (50%), Gaps = 79/518 (15%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AML TQLN L + +++++ Y V+ V NR ++I L+++I++ G K
Sbjct: 60 AMLGTQLNSYPEQELLIKNSVIKLLNYAVNVVQ-----NRLLVIALQIDIVETGPLE--K 112
Query: 395 IGNPQPLN-TNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQT--HPIVSLSPY 451
IG+PQ + T + Q + V ++ P + P Q +PI LSPY
Sbjct: 113 IGSPQNFDQTKSQQPQQQTEQQPQQQDIKPDVKPDIK-PNFSKGPSSQAPVYPIEGLSPY 171
Query: 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDK 511
QNKWTIKARVT K+ I+ W+N RG GKLFS++L+DE+GEIRAT FN+ + F++M+E+ K
Sbjct: 172 QNKWTIKARVTQKSDIKFWSNQRGEGKLFSVNLMDETGEIRATGFNESVDEFYNMLEEGK 231
Query: 512 VYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI 571
V++I+ ++ A K+FS++ N+YE++F +T + PC + ++P VKY F L+ + +
Sbjct: 232 VFFITKARVQIAKKQFSNLQNEYEIAFDKTTHIEPCY--DTSDVPDVKYSFTELQNLENL 289
Query: 572 SPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS 631
P+ DVLGV A E S + K+ QK Y KR++ +VD+SQ SV +TLWGK AE FD
Sbjct: 290 EPNAITDVLGVVTTAEEPSQIISKSTQKPYTKRELNIVDRSQQSVRLTLWGKLAENFDQV 349
Query: 632 NKPVIAVKAARVSEFQGNLLLM------------------REIQDQQ------------- 660
N+PVIA K +VS+F G L M R DQQ
Sbjct: 350 NEPVIAFKGVKVSDFGGRSLSMVGASTLFVNPDIPEAHSLRGWYDQQGKNEQFSTFNNSS 409
Query: 661 -------------------------LGMGD--KADYCSVRGIIQVFRGSNTTYKACPSQD 693
LG+ D K DY + + + + N TY +CP+
Sbjct: 410 STVKPEPGTVKPNEIKTLEQVKQSQLGLNDSGKPDYWTGKATVTYIKKENITYPSCPND- 468
Query: 694 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 753
KK+ N +RCEKC F+ YR I+ D T +W++ F + + + A
Sbjct: 469 -MKKLTQDMNDKWRCEKCESSFDAPEYRYIITCNATDHTGQIWLSGFNDFGLELFKMPAN 527
Query: 754 EV------GESTEDHPALKKALFTQYIFRLRAKLEHYN 785
++ G+ A+K AL + + F RAK + +N
Sbjct: 528 DLQAMVNNGDDASFEAAVKNALGSSFNFNCRAKQDTFN 565
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/352 (33%), Positives = 191/352 (54%), Gaps = 18/352 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ N+YE++F +T + PC + ++P VKY F L+ + + P+ DVLGV
Sbjct: 243 AKKQFSNLQNEYEIAFDKTTHIEPCYD--TSDVPDVKYSFTELQNLENLEPNAITDVLGV 300
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
A E S + K+ QK Y KR++ +VD+SQ SV +TLWGK AE FD N+PVIA K +
Sbjct: 301 VTTAEEPSQIISKSTQKPYTKRELNIVDRSQQSVRLTLWGKLAENFDQVNEPVIAFKGVK 360
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGM----GGG 180
VS+F GG++LS+ +S L +NPDIPE H L+GW+ Q N +F + + + G
Sbjct: 361 VSDF-GGRSLSMVGASTLFVNPDIPEAHSLRGWYDQQGKNEQFSTFNNSSSTVKPEPGTV 419
Query: 181 AAGNLLLMREIQDQQLGMGD--KADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNN 238
+ + +++ QLG+ D K DY + + + + N TY +CP+ KK+ N
Sbjct: 420 KPNEIKTLEQVKQSQLGLNDSGKPDYWTGKATVTYIKKENITYPSCPND--MKKLTQDMN 477
Query: 239 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV------GE 292
+RCEKC F+ YR I+ D T +W++ F + + + A ++ G+
Sbjct: 478 DKWRCEKCESSFDAPEYRYIITCNATDHTGQIWLSGFNDFGLELFKMPANDLQAMVNNGD 537
Query: 293 STEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDI 344
A+K AL + + F RAK + +N ++ +N S +++N +
Sbjct: 538 DASFEAAVKNALGSSFNFNCRAKQDTFNDNVRVRHQINRASTVNYKSEINRL 589
>gi|256070189|ref|XP_002571426.1| replication factor A 1 rfa1 [Schistosoma mansoni]
Length = 555
Score = 272 bits (695), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 177/526 (33%), Positives = 276/526 (52%), Gaps = 84/526 (15%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEI---G 392
MLATQLN +I + L T++++++++ + + + N+ VLI+L+L+I+ GT+ G
Sbjct: 1 MLATQLNHLIEENKLVNNTVIRVRKHVCNNIQN----NKVVLIVLDLDIL--GTDDSSGG 54
Query: 393 FKIGNP----QPLNTNTDN-SSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVS 447
K P +P T + + Q+TP ++T +G + P + + PI S
Sbjct: 55 VKSEQPPTVAKPATTTSHSYEPEQKTPPKSSTGPFSG--GQPSTPGTPGCGLPRVFPIQS 112
Query: 448 LSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMI 507
L+PYQN+WTI+ARV+ K+ IR W+ GKLF+ L+DESGEIR T FN E ++F+DMI
Sbjct: 113 LNPYQNRWTIRARVSQKSAIRTWSKQGRDGKLFNFTLVDESGEIRVTGFNAEVDKFYDMI 172
Query: 508 EKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKT 567
E +KVYY+S LK ANK+F++ NNDYEM+ + V+PC + + ++P + F+ +
Sbjct: 173 EVNKVYYVSRANLKAANKQFNTTNNDYEMTLHSDSQVLPCEDSDTSSLPETHFNFISIGK 232
Query: 568 IAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET 627
+ SP +D++GV + E+ S+T K +Q+ KR++ LVD S V +TLWG+EAE
Sbjct: 233 LDTQSPGSFVDIVGVVHECGEVQSITAKASQRELRKRELGLVDSSNCLVRLTLWGEEAEN 292
Query: 628 FDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGI---------IQV 678
F ++ PVI +KAA++S+F G L + + + + ++G +
Sbjct: 293 FVGASHPVIVIKAAKISDFNGRSLSVSPTSSLLISPTNIPEAIRLKGWYEHEGRFSNFET 352
Query: 679 FR----GSNTTYKACPS-----------QD----------------CNKKVI--DQNNGM 705
FR GS+ S QD C V+ + N M
Sbjct: 353 FRSEMVGSSGGADGVSSSSGVLGGWNLLQDVKASGVGANVKADYFTCKATVVFMKKENFM 412
Query: 706 YRC---EKCNK---EFNTFTYR--------------LILPVMIGDWTNSVWVTLFQNEAE 745
Y+ E CNK + YR L+L I D T +WVT FQ+ AE
Sbjct: 413 YQACSTEGCNKKVIDLGNGLYRCEKCARETPDCKWRLLLMAKIADITGDLWVTCFQDAAE 472
Query: 746 SILGVTAQEVG--ESTEDHPALKKAL----FTQYIFRLRAKLEHYN 785
+LG TA+++G +ST+D L+K F +IFRLRAK++ YN
Sbjct: 473 VLLGQTAEKLGTIKSTQDETQLEKVFIESAFNSWIFRLRAKVDRYN 518
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 128/337 (37%), Positives = 205/337 (60%), Gaps = 18/337 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F++ NNDYEM+ + V+PC + + ++P + F+ + + SP +D++GV
Sbjct: 188 ANKQFNTTNNDYEMTLHSDSQVLPCEDSDTSSLPETHFNFISIGKLDTQSPGSFVDIVGV 247
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ E+ S+T K +Q+ KR++ LVD S V +TLWG+EAE F ++ PVI +KAA+
Sbjct: 248 VHECGEVQSITAKASQRELRKRELGLVDSSNCLVRLTLWGEEAENFVGASHPVIVIKAAK 307
Query: 126 VSEFQGGKTLSLSMSSVLSLNP-DIPECHKLQGWFSTQTN-TRFEPV-SQRTGGMGG--- 179
+S+F G++LS+S +S L ++P +IPE +L+GW+ + + FE S+ G GG
Sbjct: 308 ISDFN-GRSLSVSPTSSLLISPTNIPEAIRLKGWYEHEGRFSNFETFRSEMVGSSGGADG 366
Query: 180 -----GAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVI 234
G G L+++++ +G KADY + + + + N Y+AC ++ CNKKVI
Sbjct: 367 VSSSSGVLGGWNLLQDVKASGVGANVKADYFTCKATVVFMKKENFMYQACSTEGCNKKVI 426
Query: 235 DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG--E 292
D NG+YRCEKC +E +RL+L I D T +WVT FQ+ AE +LG TA+++G +
Sbjct: 427 DLGNGLYRCEKCARETPDCKWRLLLMAKIADITGDLWVTCFQDAAEVLLGQTAEKLGTIK 486
Query: 293 STEDHPALKKAL----FTQYIFRLRAKLEHYNGTKKI 325
ST+D L+K F +IFRLRAK++ YN +++
Sbjct: 487 STQDETQLEKVFIESAFNSWIFRLRAKVDRYNDEERL 523
>gi|171691865|ref|XP_001910857.1| hypothetical protein [Podospora anserina S mat+]
gi|170945881|emb|CAP72682.1| unnamed protein product [Podospora anserina S mat+]
Length = 630
Score = 271 bits (694), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 177/557 (31%), Positives = 276/557 (49%), Gaps = 127/557 (22%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKP-------- 387
MLATQ N ++ +G L IV++K Y + ++VLI+LEL I+
Sbjct: 63 MLATQANHVVHEGKLKRGGIVRMKSYQAQALK-----GKNVLIVLELEAIESLGAPDKIG 117
Query: 388 ---GTEIGFKI---------------GNPQPLNTNTDNSSTQQTPAA--------TNTNG 421
G E G K+ G P+ T S Q+ A+ NT
Sbjct: 118 NPVGLEGGAKLEEAQPAAAAAAPAFYGAPKGEPTQESKSQVQRQLASRPNNNNHNNNTRT 177
Query: 422 SNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFS 481
S GV + + +PI +LSPY +KWTIKAR+T+K+ I+ W+ G GKLFS
Sbjct: 178 SGGVSSTI-------------YPIEALSPYAHKWTIKARLTHKSDIKTWHKNNGEGKLFS 224
Query: 482 IDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTH 540
++LLDES EI+ATMFND+ ++F+D++++ +VYYIS C ++ A K+FS++ NDYE++F
Sbjct: 225 VNLLDESSEIKATMFNDQVDQFYDVLQEGQVYYISAPCRVQLAKKQFSNLPNDYELTFER 284
Query: 541 STTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKT 600
TV+ ED+ ++P V++ F ++ + + D +DVLGV E+SS+T K+ QK
Sbjct: 285 D-TVVEKAEDQ-SSVPQVRFNFCNIQELQSVEKDATVDVLGVLKTVHEVSSITSKSTQKP 342
Query: 601 YMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGN----------- 649
Y KR++ LVDQ+ SV +T+WGK A F + VIA K RVS+F G
Sbjct: 343 YDKRELELVDQTGYSVRVTVWGKTATEFQGKPEEVIAFKGTRVSDFNGRSLSLLSSGTMA 402
Query: 650 ------------------------------------------LLLMREIQDQQLGMGDKA 667
+L++++++++ +G DK
Sbjct: 403 IDPDIPEAHALKGWYDSTGRHSDFATHSNMSSVGAASGRTNEILMIQQVKEKDVGF-DKP 461
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
+Y SV+ I + N Y AC S+ CNKKV D +G +RCEKC+ + YR IL
Sbjct: 462 EYFSVQATIVHVKQDNFCYPACRSEGCNKKVTDMGDGTWRCEKCDVTHDRPEYRYILNFN 521
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEV---------GESTEDHPALKKALFT------- 771
D T +W++ F + +LG +A E+ G+++++ + FT
Sbjct: 522 CSDHTGQIWLSCFDEQGRKLLGASADELMEWKQIKESGDASDEARKEAEVRFTTAFDSAN 581
Query: 772 --QYIFRLRAKLEHYNK 786
+ FR RAK++ Y +
Sbjct: 582 CRKMTFRARAKMDTYGE 598
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 118/340 (34%), Positives = 192/340 (56%), Gaps = 24/340 (7%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ NDYE++F T V+ ED+ ++P V++ F ++ + + D +DVLGV
Sbjct: 267 AKKQFSNLPNDYELTFERDT-VVEKAEDQ-SSVPQVRFNFCNIQELQSVEKDATVDVLGV 324
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
E+SS+T K+ QK Y KR++ LVDQ+ SV +T+WGK A F + VIA K R
Sbjct: 325 LKTVHEVSSITSKSTQKPYDKRELELVDQTGYSVRVTVWGKTATEFQGKPEEVIAFKGTR 384
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTG-GMGGGAAG 183
VS+F G++LSL S ++++PDIPE H L+GW+ ST ++ F S + G G
Sbjct: 385 VSDF-NGRSLSLLSSGTMAIDPDIPEAHALKGWYDSTGRHSDFATHSNMSSVGAASGRTN 443
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+L++++++++ +G DK +Y SV+ I + N Y AC S+ CNKKV D +G +RC
Sbjct: 444 EILMIQQVKEKDVGF-DKPEYFSVQATIVHVKQDNFCYPACRSEGCNKKVTDMGDGTWRC 502
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV---------GEST 294
EKC+ + YR IL D T +W++ F + +LG +A E+ G+++
Sbjct: 503 EKCDVTHDRPEYRYILNFNCSDHTGQIWLSCFDEQGRKLLGASADELMEWKQIKESGDAS 562
Query: 295 EDHPALKKALFT---------QYIFRLRAKLEHYNGTKKI 325
++ + FT + FR RAK++ Y +++
Sbjct: 563 DEARKEAEVRFTTAFDSANCRKMTFRARAKMDTYGEQQRV 602
>gi|168050100|ref|XP_001777498.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671116|gb|EDQ57673.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 632
Score = 271 bits (694), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 183/573 (31%), Positives = 280/573 (48%), Gaps = 123/573 (21%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGV++ AMLATQLN+ + + + +IVQ+ YI + V NR ++I+L + I
Sbjct: 46 LSDGVHLQQ-AMLATQLNEKVKNNLAVKGSIVQLLEYICNTVQ-----NRKIIIVLNMEI 99
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSST-------------QQTPAATNTNGSNGV------ 425
++ EI IG+P+ L ++ + QQ P +T S V
Sbjct: 100 VETKAEI---IGDPKHLIAGGEHQAPGPGPGPGPGSLQPQQPPPRISTPSSATVSANSGS 156
Query: 426 ----------HNNVAIPRQA---------SAPVVQTH------PIVSLSPYQNKWTIKAR 460
N+ P A P+V+ PI +L+PYQ +WTIKAR
Sbjct: 157 RAGYGQQGQPQNSYGRPMAAYQPAPVYGNRGPIVKNEAPARIIPIAALNPYQGRWTIKAR 216
Query: 461 VTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKDKVYYISNCT 519
VT+K IR ++NA+G GK+FS D+LD + GEIRAT FN+ ++FHD IE KVY IS +
Sbjct: 217 VTSKGEIRRFHNAKGEGKVFSFDMLDADGGEIRATCFNNVVDQFHDRIEVGKVYLISKGS 276
Query: 520 LKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDV 579
LK A K F+ + ND+E+ +T+ PC DE ++P Y F P+ +A + + ID+
Sbjct: 277 LKAAQKNFNHLKNDWEIFLESQSTIEPCY-DEDSSIPQQHYDFRPISEVATLENNAMIDI 335
Query: 580 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEAETF----DAS 631
+GV + ++T K +T KR + L D S SV +T+WG KE + D+
Sbjct: 336 IGVVMSITPTVTITRKNGLET-QKRSLQLKDMSNRSVELTMWGNFCNKEGQELQDLCDSG 394
Query: 632 NKPVIAVKAARVSEFQGN-----------------------------------LLLMRE- 655
PV+AVKA RVS+F G + L RE
Sbjct: 395 ANPVLAVKAGRVSDFSGKSVGTISSTQLVINPDHPEARKVRDWFNREGMNSTTVFLSREG 454
Query: 656 --------------IQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNKK 697
I+D+ LG GDK D+ ++R + + N Y ACP + C KK
Sbjct: 455 GGGGRLEQRKTVAAIKDEGLGRGDKPDWITIRATVFYIKPENFCYSACPLEVNGKQCMKK 514
Query: 698 VIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE 757
V + +G +RC++C++ YR +L + + D T W+T+FQ E ++ TA+E+
Sbjct: 515 VTNNGDGTWRCDRCDRSVPECDYRYLLSIQVQDHTGPTWITVFQETGEELMHHTAKELFL 574
Query: 758 STEDHP-----ALKKALFTQYIFRLRAKLEHYN 785
++D P A++K F ++IF+L+ K E YN
Sbjct: 575 WSQDEPQRFSEAIQKLTFMKHIFKLKVKEETYN 607
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/351 (31%), Positives = 178/351 (50%), Gaps = 51/351 (14%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K F+ + ND+E+ +T+ PC DE ++P Y F P+ +A + + ID++GV
Sbjct: 280 AQKNFNHLKNDWEIFLESQSTIEPCY-DEDSSIPQQHYDFRPISEVATLENNAMIDIIGV 338
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEAETF----DASNKP 117
+ ++T K +T KR + L D S SV +T+WG KE + D+ P
Sbjct: 339 VMSITPTVTITRKNGLET-QKRSLQLKDMSNRSVELTMWGNFCNKEGQELQDLCDSGANP 397
Query: 118 VIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGM 177
V+AVKA RVS+F GK++ S+ L +NPD PE K++ WF+ +
Sbjct: 398 VLAVKAGRVSDF-SGKSVGTISSTQLVINPDHPEARKVRDWFNRE--------------- 441
Query: 178 GGGAAGNLLLMRE---------------IQDQQLGMGDKADYCSVRGIIQVFRGSNTTYK 222
G + + L RE I+D+ LG GDK D+ ++R + + N Y
Sbjct: 442 -GMNSTTVFLSREGGGGGRLEQRKTVAAIKDEGLGRGDKPDWITIRATVFYIKPENFCYS 500
Query: 223 ACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNE 278
ACP + C KKV + +G +RC++C++ YR +L + + D T W+T+FQ
Sbjct: 501 ACPLEVNGKQCMKKVTNNGDGTWRCDRCDRSVPECDYRYLLSIQVQDHTGPTWITVFQET 560
Query: 279 AESILGVTAQEVGESTEDHP-----ALKKALFTQYIFRLRAKLEHYNGTKK 324
E ++ TA+E+ ++D P A++K F ++IF+L+ K E YN ++
Sbjct: 561 GEELMHHTAKELFLWSQDEPQRFSEAIQKLTFMKHIFKLKVKEETYNDEQR 611
>gi|225678017|gb|EEH16301.1| replication protein A 70 kDa DNA-binding subunit [Paracoccidioides
brasiliensis Pb03]
gi|226287502|gb|EEH43015.1| replication factor-A protein [Paracoccidioides brasiliensis Pb18]
Length = 603
Score = 271 bits (694), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 166/518 (32%), Positives = 262/518 (50%), Gaps = 75/518 (14%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLATQ N +T G L V++K + + V + +LI+L+L ++ KI
Sbjct: 61 MLATQANHYVTSGQLVRGCFVRLKSFQANLVK-----GKRILIVLDLEVLDRLGVCEKKI 115
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAI-------PRQASAPVVQTHPIVSL 448
G PQPL+ + + P +TNG G ++ +PI +L
Sbjct: 116 GEPQPLDMKQEEQD-KSLPTTISTNGFYGSRAPQQAPQQSAQRSSASTTAYANIYPIEAL 174
Query: 449 SPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIE 508
SPY +KWTIKAR TNK+ I+ W+N G G+LFS++LLD+SGEIRAT F D+C+ + + E
Sbjct: 175 SPYSHKWTIKARCTNKSEIKTWHNKNGEGRLFSVNLLDDSGEIRATAFKDQCDALYGVFE 234
Query: 509 KDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKT 567
+ VYYIS+ C ++ A K F+++NN+YE++F T V +E ++P +++ F +
Sbjct: 235 EGSVYYISSPCRVQIAKKAFTNLNNEYELTFEKDTVVE--KAEEQNDVPQIRFNFTNIAN 292
Query: 568 IAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET 627
+ I P IDV+GV D E S + KT K Y KRD+TLVD + SV +T+WG A+
Sbjct: 293 LQTIEPGTTIDVIGVLKDVGEASQILSKTTSKPYDKRDLTLVDNTGYSVRLTVWGNAAKD 352
Query: 628 FDASNKPVIAVKAARVSEF---------QGNLLLMREIQDQQ------------------ 660
FD+ + V+A K +VS+F G++ + +I+D
Sbjct: 353 FDSMPESVVAFKGVKVSDFGGRSLSLLSSGSMTVDPDIEDAHKLKGWYEAQGRSETFASH 412
Query: 661 ------LGMGD---------------------KADYCSVRGIIQVFRGSNTTYKACPSQD 693
+G GD K DY S++ + + Y AC +
Sbjct: 413 ESISGAVGAGDRRANSFKTIAQVQEENLGMSEKPDYFSLKATVVYVKQDTMAYPACLTDK 472
Query: 694 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 753
CNKKV+ G +RCE+C++ F YR IL V + D T ++W++ F +++LG++A
Sbjct: 473 CNKKVLQDETGRWRCERCDQSFPRPEYRYILSVNVCDHTGALWLSCFDEVGKALLGISAN 532
Query: 754 EVGESTED----HPAL-KKALFTQYIFRLRAKLEHYNK 786
E+ E ++ H L +KA + F RAK++ + +
Sbjct: 533 EIMELKDNDERAHEELVQKANCRAWNFNCRAKMDSFQE 570
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/328 (33%), Positives = 187/328 (57%), Gaps = 11/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K F+++NN+YE++F T V +E ++P +++ F + + I P IDV+GV
Sbjct: 250 AKKAFTNLNNEYELTFEKDTVVE--KAEEQNDVPQIRFNFTNIANLQTIEPGTTIDVIGV 307
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D E S + KT K Y KRD+TLVD + SV +T+WG A+ FD+ + V+A K +
Sbjct: 308 LKDVGEASQILSKTTSKPYDKRDLTLVDNTGYSVRLTVWGNAAKDFDSMPESVVAFKGVK 367
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRTGGMGGG--AA 182
VS+F G ++LSL S ++++PDI + HKL+GW+ Q + F +G +G G A
Sbjct: 368 VSDFGG-RSLSLLSSGSMTVDPDIEDAHKLKGWYEAQGRSETFASHESISGAVGAGDRRA 426
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
+ + ++Q++ LGM +K DY S++ + + Y AC + CNKKV+ G +R
Sbjct: 427 NSFKTIAQVQEENLGMSEKPDYFSLKATVVYVKQDTMAYPACLTDKCNKKVLQDETGRWR 486
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED----HP 298
CE+C++ F YR IL V + D T ++W++ F +++LG++A E+ E ++ H
Sbjct: 487 CERCDQSFPRPEYRYILSVNVCDHTGALWLSCFDEVGKALLGISANEIMELKDNDERAHE 546
Query: 299 AL-KKALFTQYIFRLRAKLEHYNGTKKI 325
L +KA + F RAK++ + +++
Sbjct: 547 ELVQKANCRAWNFNCRAKMDSFQEQQRV 574
>gi|380486564|emb|CCF38620.1| replication factor-a protein 1 [Colletotrichum higginsianum]
Length = 607
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 174/535 (32%), Positives = 278/535 (51%), Gaps = 95/535 (17%)
Query: 330 NINSFA--MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKP 387
++N++ MLATQ+N +I + L IV+I +Y + S +++LIIL L +I+
Sbjct: 56 DVNNYVQCMLATQVNHVIHENKLVRNCIVRITQY-----QANSVKGKNILIILGLEVIE- 109
Query: 388 GTEIGF--KIGNPQPLNTNTDNSSTQQTPAATNTNGSN--GVHN-------NVAIPRQAS 436
++G KIG PQ + PA T G N GV +IP +++
Sbjct: 110 --QLGTPDKIGEPQAF------EAKPPAPANTTIGGQNFYGVKQEETKPKPQQSIPSRSA 161
Query: 437 APVVQTH------PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE 490
H PI +LSPY +KWTIKARVT K+ IR W+ G GKLFS++LLDESGE
Sbjct: 162 GGATGQHGSSNIYPIEALSPYAHKWTIKARVTQKSDIRTWHKPSGEGKLFSVNLLDESGE 221
Query: 491 IRATMFNDECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNE 549
I+AT FN++ ++++D++++ VYYIS+ C ++ A K+F+++ NDYE++F T + E
Sbjct: 222 IKATGFNEQVDQYYDLLQEGGVYYISSPCKVQLAKKQFTNLPNDYELTFERDTQIEKA-E 280
Query: 550 DEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLV 609
D+ N+P V++ F ++ + E+ D +D++GV D E+S + K+ K Y KR++TLV
Sbjct: 281 DQ-SNVPQVRFNFCNIQELQEVEKDATVDIIGVLKDVDEVSQIVSKSTGKPYEKRELTLV 339
Query: 610 DQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM---------------- 653
D + SV +T+WGK A FDA + V+A K +VS+F G L +
Sbjct: 340 DDTNYSVRVTIWGKSATNFDAKPESVVAFKGTKVSDFGGRSLSLLSSGTMSIDPDIPDAH 399
Query: 654 -----------------------------REIQD--------QQLGMGDKADYCSVRGII 676
R+ QD + LGM ++ DY +++ I
Sbjct: 400 RLKGWYDSSGRNDTFSNHNNMVSMGNATGRKDQDKSILQVKEENLGM-EQQDYFNLKATI 458
Query: 677 QVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW 736
+ N Y AC ++ CNKKV + G +RCEKC+ YR I+ V + D TN +W
Sbjct: 459 VYIKQDNFAYPACMNEGCNKKVTETGEGAWRCEKCDVSHPKPEYRYIMSVNVCDHTNQLW 518
Query: 737 VTLFQNEAESILGVTAQEVGESTEDHP-----ALKKALFTQYIFRLRAKLEHYNK 786
++ F + I+G++A ++ E+ A + A + FR RAK++ + +
Sbjct: 519 LSCFDDVGRVIMGMSADQLTNLREEDETKMAQAFEDANCRKLNFRCRAKMDTFGE 573
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/327 (33%), Positives = 188/327 (57%), Gaps = 11/327 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+F+++ NDYE++F T + ED+ N+P V++ F ++ + E+ D +D++GV
Sbjct: 255 AKKQFTNLPNDYELTFERDTQIEKA-EDQ-SNVPQVRFNFCNIQELQEVEKDATVDIIGV 312
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D E+S + K+ K Y KR++TLVD + SV +T+WGK A FDA + V+A K +
Sbjct: 313 LKDVDEVSQIVSKSTGKPYEKRELTLVDDTNYSVRVTIWGKSATNFDAKPESVVAFKGTK 372
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTG-GMGGGAAG 183
VS+F GG++LSL S +S++PDIP+ H+L+GW+ S+ N F + G G
Sbjct: 373 VSDF-GGRSLSLLSSGTMSIDPDIPDAHRLKGWYDSSGRNDTFSNHNNMVSMGNATGRKD 431
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ +++++ LGM ++ DY +++ I + N Y AC ++ CNKKV + G +RC
Sbjct: 432 QDKSILQVKEENLGM-EQQDYFNLKATIVYIKQDNFAYPACMNEGCNKKVTETGEGAWRC 490
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP----- 298
EKC+ YR I+ V + D TN +W++ F + I+G++A ++ E+
Sbjct: 491 EKCDVSHPKPEYRYIMSVNVCDHTNQLWLSCFDDVGRVIMGMSADQLTNLREEDETKMAQ 550
Query: 299 ALKKALFTQYIFRLRAKLEHYNGTKKI 325
A + A + FR RAK++ + ++++
Sbjct: 551 AFEDANCRKLNFRCRAKMDTFGESQRV 577
>gi|358395596|gb|EHK44983.1| hypothetical protein TRIATDRAFT_139326 [Trichoderma atroviride IMI
206040]
Length = 600
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 168/516 (32%), Positives = 262/516 (50%), Gaps = 79/516 (15%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRY---IVSGVSSGSATNRSVLIILELNIIKPGTEIG 392
MLAT N II DG L I ++K+Y I+ G V+ L L+
Sbjct: 63 MLATAANHIIHDGKLERGCIARVKKYQPNILKGKHILIILEIEVIESLGLHD-------- 114
Query: 393 FKIGNP-----QPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVS 447
KIGNP + + D + + A R A+ +PI +
Sbjct: 115 -KIGNPVVHEPKAADATIDGNDFYGAKKEEMDTKPQMQQHQPAPSRSATHAGANIYPIEA 173
Query: 448 LSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMI 507
LSP+ +KWTIKARVT K+ I+ W+ G GKLFS++LLDESGEI+AT FND+C+ F+D++
Sbjct: 174 LSPFSHKWTIKARVTFKSDIKTWHKPTGEGKLFSVNLLDESGEIKATGFNDQCDAFYDLL 233
Query: 508 EKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLK 566
++ VYYIS C + A K+FS+++NDYE++F T VI ED+ N+P +++ F ++
Sbjct: 234 QEGSVYYISTPCRVALAKKQFSNLSNDYELTFERET-VIEKAEDQT-NVPQLRFNFCSIQ 291
Query: 567 TIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE 626
+ + D +DV+GV + AE+S +T K + + + KR++TLVD + SV +T+WGK A
Sbjct: 292 ELQSVEKDSTVDVIGVLKEVAEVSEITSKKDGRPFQKRELTLVDDTGYSVRVTIWGKTAN 351
Query: 627 TFDASNKPVIAVKAARVSEFQG-------------------------------------- 648
FDA+ + V+A K +VS+F G
Sbjct: 352 GFDANPESVVAFKGTKVSDFGGKSLSLLSSGTMTVNPDIPDAYRLKGWYDSAGRTDTFAT 411
Query: 649 ---------------NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD 693
++ + +++D+ LG+ D+A Y +++ I + + Y AC +Q
Sbjct: 412 HQNLAGVAGATGRKDDIKTISQVKDENLGVDDQA-YYTIKATIVFVKQDSFCYPACSTQG 470
Query: 694 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 753
CNKKV +G + CEKCN + YR IL + + D T+ W++ F + I+G++A
Sbjct: 471 CNKKVTSMPDGTWHCEKCNVSHDRPDYRYILNLNVADHTSHQWLSCFDDTGRIIVGMSAN 530
Query: 754 EVGESTEDHPALKKALF-----TQYIFRLRAKLEHY 784
E+ E E+ A A F + FR RAKL+H+
Sbjct: 531 ELMELKENDDAKFMAAFEAVNCKKLTFRCRAKLDHF 566
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/352 (34%), Positives = 205/352 (58%), Gaps = 18/352 (5%)
Query: 4 APANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVL 63
A A K+FS+++NDYE++F T VI ED+ N+P +++ F ++ + + D +DV+
Sbjct: 248 ALAKKQFSNLSNDYELTFERET-VIEKAEDQT-NVPQLRFNFCSIQELQSVEKDSTVDVI 305
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKA 123
GV + AE+S +T K + + + KR++TLVD + SV +T+WGK A FDA+ + V+A K
Sbjct: 306 GVLKEVAEVSEITSKKDGRPFQKRELTLVDDTGYSVRVTIWGKTANGFDANPESVVAFKG 365
Query: 124 ARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGG--GA 181
+VS+F GGK+LSL S +++NPDIP+ ++L+GW+ + T Q G+ G G
Sbjct: 366 TKVSDF-GGKSLSLLSSGTMTVNPDIPDAYRLKGWYDSAGRTDTFATHQNLAGVAGATGR 424
Query: 182 AGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMY 241
++ + +++D+ LG+ D+A Y +++ I + + Y AC +Q CNKKV +G +
Sbjct: 425 KDDIKTISQVKDENLGVDDQA-YYTIKATIVFVKQDSFCYPACSTQGCNKKVTSMPDGTW 483
Query: 242 RCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALK 301
CEKCN + YR IL + + D T+ W++ F + I+G++A E+ E E+ A
Sbjct: 484 HCEKCNVSHDRPDYRYILNLNVADHTSHQWLSCFDDTGRIIVGMSANELMELKENDDAKF 543
Query: 302 KALF-----TQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDIITDG 348
A F + FR RAKL+H+ T+++ + +L+ L D T+G
Sbjct: 544 MAAFEAVNCKKLTFRCRAKLDHFGDTQRV-------RYQVLSAALMDYKTEG 588
>gi|452004612|gb|EMD97068.1| hypothetical protein COCHEDRAFT_1189989 [Cochliobolus
heterostrophus C5]
Length = 611
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 170/520 (32%), Positives = 269/520 (51%), Gaps = 83/520 (15%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
M+AT N+I+T G L + +IV++ +Y V ++++LII+EL ++ E+ KI
Sbjct: 62 MIATTANEIVTSGQLKKGSIVRLLKYNPQRVK-----DKNILIIMELEVLSQYGELD-KI 115
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQT----------HPI 445
G P+ L+T ++ PAA N G A Q S P Q+ +PI
Sbjct: 116 GQPEALDTKPADAQ----PAAIPGNNFYGSKPAPAPQPQRSLPTHQSNPGTSSHPHLYPI 171
Query: 446 VSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHD 505
SLSPY +KWTI+AR T+K+ ++EW+N +G+GKLFS++LLD++GEIRAT F + ++
Sbjct: 172 ESLSPYAHKWTIRARCTHKSDMKEWHNQKGTGKLFSVNLLDDTGEIRATAFTEVADKLFP 231
Query: 506 MIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP 564
+ E+ VYYIS C + A K FS++ NDYE+ F T V + + N P +++ F
Sbjct: 232 VFEEGVVYYISAPCRVTLAKKNFSNLPNDYELQFERDTEVEKAEDQD--NKPQIRFNFTK 289
Query: 565 LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE 624
+ + + D ID +GV + AE++++T K K + KR++TL D SQ SV +T+WGK
Sbjct: 290 IGDLTSVEKDTTIDTIGVLKEVAEVTTITSKNTNKDFSKRELTLADDSQTSVRLTIWGKT 349
Query: 625 AETFDASNKPVIAVKAARVSEF---------QGNLLLMREIQDQQ--------LGM---- 663
AE+FD + ++A K +VS+F G++++ +I + +G
Sbjct: 350 AESFDVPLESIVAFKGVKVSDFGGRSLSLLSSGSMMVDPDIDEAHKLRGWFNAVGQNATF 409
Query: 664 -----------GDKADYCSVRGIIQ-------------------VFRGSNTTYKACPSQD 693
G K D + II+ R S Y AC +Q
Sbjct: 410 STHQSMVSNTGGSKNDAKPISAIIEEEAYLQDTPSYMSLRASVVYVRDSTFAYPACSTQG 469
Query: 694 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 753
CNKKVI++N G + CEKC F YR +L +GD T ++W++ F ++I+GV+A
Sbjct: 470 CNKKVIEENPGSWWCEKCQAAFPEPNYRYVLSANVGDHTGTLWLSCFDEAGQAIIGVSAN 529
Query: 754 EVGESTEDHP---------ALKKALFTQYIFRLRAKLEHY 784
E + D +++A + FR+RAK+E Y
Sbjct: 530 EAMKMKMDDEENGTTNFRNVMQEATCKTFNFRVRAKMETY 569
Score = 198 bits (504), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 118/360 (32%), Positives = 188/360 (52%), Gaps = 17/360 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K FS++ NDYE+ F T V + + N P +++ F + + + D ID +GV
Sbjct: 250 AKKNFSNLPNDYELQFERDTEVEKAEDQD--NKPQIRFNFTKIGDLTSVEKDTTIDTIGV 307
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ AE++++T K K + KR++TL D SQ SV +T+WGK AE+FD + ++A K +
Sbjct: 308 LKEVAEVTTITSKNTNKDFSKRELTLADDSQTSVRLTIWGKTAESFDVPLESIVAFKGVK 367
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
VS+F G LS S++ ++PDI E HKL+GWF+ Q GG+ +
Sbjct: 368 VSDFGGRSLSLLSSGSMM-VDPDIDEAHKLRGWFNAVGQNATFSTHQSMVSNTGGSKNDA 426
Query: 186 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 245
+ I +++ + D Y S+R + R S Y AC +Q CNKKVI++N G + CEK
Sbjct: 427 KPISAIIEEEAYLQDTPSYMSLRASVVYVRDSTFAYPACSTQGCNKKVIEENPGSWWCEK 486
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP------- 298
C F YR +L +GD T ++W++ F ++I+GV+A E + D
Sbjct: 487 CQAAFPEPNYRYVLSANVGDHTGTLWLSCFDEAGQAIIGVSANEAMKMKMDDEENGTTNF 546
Query: 299 --ALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNIN----SFAMLATQLNDIITDGTLSE 352
+++A + FR+RAK+E Y K P +N +FA A +L +I ++E
Sbjct: 547 RNVMQEATCKTFNFRVRAKMETYQDQPK-PRYQVMNIYPLNFAQEANKLAQLIKQYNMNE 605
>gi|47122884|gb|AAH70559.1| LOC397937 protein [Xenopus laevis]
Length = 607
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 138/338 (40%), Positives = 209/338 (61%), Gaps = 20/338 (5%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ + L+ I Q+ R+IV+ + G R V+I++EL++
Sbjct: 46 MSDGLNTLSSFMLATQLNSLVDNNLLATNCICQVSRFIVNNLKDG----RRVIIVMELDV 101
Query: 385 IKPGTEIGFKIGNPQPLN--------------TNTDNSSTQQTPAATNTNGSNGVHNNVA 430
+K + KIGNPQP N P + G++ + +
Sbjct: 102 LKSADLVMGKIGNPQPYNDGQPQPAAPAPASAPAPSKPQNNSAPPPSMNRGTSKLFGGGS 161
Query: 431 IPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE 490
+ + PI SL+PYQ+KWT++ARVTNK IR W+N+RG GKLFSI+++DESGE
Sbjct: 162 LLNTPGGSQSKVVPIASLNPYQSKWTVRARVTNKGQIRTWSNSRGEGKLFSIEMVDESGE 221
Query: 491 IRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED 550
IRAT FN++ ++F +IE +KVYY S TLK ANK+++S+ NDYEM+F T+VIPC D
Sbjct: 222 IRATAFNEQADKFFSIIEVNKVYYFSKGTLKIANKQYTSVKNDYEMTFNSETSVIPC--D 279
Query: 551 EVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVD 610
+ ++P V++ FV + + + D +D++GVC + E++ VT K+N + KR I L+D
Sbjct: 280 DSADVPMVQFEFVSIGELESKNKDTVLDIIGVCKNVEEVTKVTIKSNNREVSKRSIHLMD 339
Query: 611 QSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG 648
S V+ TLWG++A+ FD S +PV+A+K AR+S+F G
Sbjct: 340 SSGKVVSTTLWGEDADKFDGSRQPVVAIKGARLSDFGG 377
Score = 268 bits (684), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 146/326 (44%), Positives = 205/326 (62%), Gaps = 9/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+++S+ NDYEM+F T+VIPC D+ ++P V++ FV + + + D +D++GV
Sbjct: 254 ANKQYTSVKNDYEMTFNSETSVIPC--DDSADVPMVQFEFVSIGELESKNKDTVLDIIGV 311
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + E++ VT K+N + KR I L+D S V+ TLWG++A+ FD S +PV+A+K AR
Sbjct: 312 CKNVEEVTKVTIKSNNREVSKRSIHLMDSSGKVVSTTLWGEDADKFDGSRQPVVAIKGAR 371
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGMGGGAAGN 184
+S+F GG++LS+ SS + +NPDIPE KL+ WF ++ +S+ GG GG N
Sbjct: 372 LSDF-GGRSLSVLSSSTVMINPDIPEAFKLRAWFDSEGQVVEGTSISESRGGGTGGGNTN 430
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ E++++ LG G+KADY + I R N Y+ACPSQDCNKKVIDQ NG++RCE
Sbjct: 431 WKSLLEVKNENLGHGEKADYFTSVATIVYLRKENCLYQACPSQDCNKKVIDQQNGLFRCE 490
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PA 299
KCNKEF F YRLIL I D+ + W+T FQ AESILG A +GE E +
Sbjct: 491 KCNKEFPNFKYRLILSANIADFGENQWITCFQESAESILGQNATYLGELKEKNEQAYDEV 550
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F Y FR R KLE YN +I
Sbjct: 551 FQNANFRSYTFRARVKLETYNDESRI 576
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 86/138 (62%), Gaps = 5/138 (3%)
Query: 653 MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCN 712
+ E++++ LG G+KADY + I R N Y+ACPSQDCNKKVIDQ NG++RCEKCN
Sbjct: 434 LLEVKNENLGHGEKADYFTSVATIVYLRKENCLYQACPSQDCNKKVIDQQNGLFRCEKCN 493
Query: 713 KEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKK 767
KEF F YRLIL I D+ + W+T FQ AESILG A +GE E + +
Sbjct: 494 KEFPNFKYRLILSANIADFGENQWITCFQESAESILGQNATYLGELKEKNEQAYDEVFQN 553
Query: 768 ALFTQYIFRLRAKLEHYN 785
A F Y FR R KLE YN
Sbjct: 554 ANFRSYTFRARVKLETYN 571
>gi|156048933|ref|XP_001590433.1| hypothetical protein SS1G_08173 [Sclerotinia sclerotiorum 1980]
gi|154692572|gb|EDN92310.1| hypothetical protein SS1G_08173 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 609
Score = 270 bits (689), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 172/527 (32%), Positives = 263/527 (49%), Gaps = 91/527 (17%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILE-LNIIKPGTEIGFK 394
MLATQ N +I DG L++ +++K Y + V + ++E L ++ K
Sbjct: 65 MLATQANHVIHDGKLTKGCFIRLKNYQANEVKGKRILIILDIDVIESLGTME-------K 117
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASA-----PVVQT------- 442
IG P + D T G G + N P+Q +A P
Sbjct: 118 IGEPTAVKVEVD------VKPHNTTIGGGGFYGNKPQPQQPAAQDRALPSRSGPSNSSSH 171
Query: 443 ---HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE 499
+PI SLSPY +KWTIKARVT+K+ IR W+ GKLFS++LLDESGEI+AT FN++
Sbjct: 172 ATIYPIESLSPYAHKWTIKARVTSKSDIRTWHKQNSEGKLFSVNLLDESGEIKATGFNEQ 231
Query: 500 CNRFHDMIEKDKVYYI-SNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV 558
C+ +++ ++ VYYI S C ++ A K+FS+INNDYE+ F T V + + N+P V
Sbjct: 232 CDALYELFQEGNVYYITSPCRVQIAKKQFSNINNDYELMFERDTLVEKAEDQD--NVPQV 289
Query: 559 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM 618
+Y F + + I D +D++ V + E S + KT K Y KR++TLVD + SV +
Sbjct: 290 RYNFSNIGDLQTIEKDSTVDLIAVLKEVGETSEIMSKTTNKPYSKRELTLVDDTGYSVRL 349
Query: 619 TLWGKEAETFDASNKPVIAVKAARVSEF-------------------------------- 646
T+WGK A +FDAS + ++A K +VS+F
Sbjct: 350 TVWGKTATSFDASPESIVAFKGVKVSDFGGRSLSLLSSGSMSFDPDIQEAHRLKGWYDSQ 409
Query: 647 ---------------------QGNLLLMREIQDQQLGMGDK-ADYCSVRGIIQVFRGSNT 684
Q L + +I+D+ LGM ++ DY S R I +
Sbjct: 410 GRTENFASHSNMASAGAAGGRQDPLKTVAQIKDEGLGMSEENTDYFSTRATIVYIKQETF 469
Query: 685 TYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEA 744
Y +C +++C+KKV+++N+G +RCEKCN+ YR IL + + D T +W+T F
Sbjct: 470 CYPSCINENCSKKVVEENDGTWRCEKCNQTHPKPEYRYILSLNVNDHTGQLWLTAFDEVG 529
Query: 745 ESILGVTAQEVGESTE-DHPALKKAL----FTQYIFRLRAKLEHYNK 786
I+G++A E+ E E D AL+KA F+ RAK +++ +
Sbjct: 530 RLIMGMSADEMMELKENDQSALEKAFDDANCKMMTFKCRAKTDNFKE 576
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 126/351 (35%), Positives = 197/351 (56%), Gaps = 14/351 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS+INNDYE+ F T V + + N+P V+Y F + + I D +D++ V
Sbjct: 256 AKKQFSNINNDYELMFERDTLVEKAEDQD--NVPQVRYNFSNIGDLQTIEKDSTVDLIAV 313
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ E S + KT K Y KR++TLVD + SV +T+WGK A +FDAS + ++A K +
Sbjct: 314 LKEVGETSEIMSKTTNKPYSKRELTLVDDTGYSVRLTVWGKTATSFDASPESIVAFKGVK 373
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQ-RTGGMGGGAAG 183
VS+F G++LSL S +S +PDI E H+L+GW+ +Q T F S + G GG
Sbjct: 374 VSDFG-GRSLSLLSSGSMSFDPDIQEAHRLKGWYDSQGRTENFASHSNMASAGAAGGRQD 432
Query: 184 NLLLMREIQDQQLGMGDK-ADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
L + +I+D+ LGM ++ DY S R I + Y +C +++C+KKV+++N+G +R
Sbjct: 433 PLKTVAQIKDEGLGMSEENTDYFSTRATIVYIKQETFCYPSCINENCSKKVVEENDGTWR 492
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPALK 301
CEKCN+ YR IL + + D T +W+T F I+G++A E+ E E D AL+
Sbjct: 493 CEKCNQTHPKPEYRYILSLNVNDHTGQLWLTAFDEVGRLIMGMSADEMMELKENDQSALE 552
Query: 302 KAL----FTQYIFRLRAKLEHYNGTKKIPDGVNINS---FAMLATQLNDII 345
KA F+ RAK +++ ++ VN S + A +L ++I
Sbjct: 553 KAFDDANCKMMTFKCRAKTDNFKEQARVRYQVNSASAVNYGADALKLAELI 603
>gi|147901418|ref|NP_001081585.1| replication protein A 70 kDa DNA-binding subunit [Xenopus laevis]
gi|400975|sp|Q01588.1|RFA1_XENLA RecName: Full=Replication protein A 70 kDa DNA-binding subunit;
Short=RP-A p70; AltName: Full=Replication factor A
protein 1; Short=RF-A protein 1; AltName:
Full=Single-stranded DNA-binding protein
gi|65066|emb|CAA47665.1| replication protein A (RPA) [Xenopus laevis]
Length = 609
Score = 270 bits (689), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 138/340 (40%), Positives = 209/340 (61%), Gaps = 22/340 (6%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ + L+ I Q+ R+IV+ + G R V+I++EL++
Sbjct: 46 MSDGLNTLSSFMLATQLNSLVDNNLLATNCICQVSRFIVNNLKDG----RRVIIVMELDV 101
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNS----------------STQQTPAATNTNGSNGVHNN 428
+K + KIGNPQP N P + G++ +
Sbjct: 102 LKSADLVMGKIGNPQPYNDGQPQPAAPAPASAPAPAPSKLQNNSAPPPSMNRGTSKLFGG 161
Query: 429 VAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDES 488
++ + PI SL+PYQ+KWT++ARVTNK IR W+N+RG GKLFSI+++DES
Sbjct: 162 GSLLNTPGGSQSKVVPIASLNPYQSKWTVRARVTNKGQIRTWSNSRGEGKLFSIEMVDES 221
Query: 489 GEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
GEIRAT FN++ ++F +IE +KVYY S TLK ANK+++S+ NDYEM+F T+VIPC
Sbjct: 222 GEIRATAFNEQADKFFSIIEVNKVYYFSKGTLKIANKQYTSVKNDYEMTFNSETSVIPC- 280
Query: 549 EDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITL 608
D+ ++P V++ FV + + + D +D++GVC + E++ VT K+N + KR I L
Sbjct: 281 -DDSADVPMVQFEFVSIGELESKNKDTVLDIIGVCKNVEEVTKVTIKSNNREVSKRSIHL 339
Query: 609 VDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG 648
+D S V+ TLWG++A+ FD S +PV+A+K AR+S+F G
Sbjct: 340 MDSSGKVVSTTLWGEDADKFDGSRQPVVAIKGARLSDFGG 379
Score = 268 bits (685), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 146/326 (44%), Positives = 205/326 (62%), Gaps = 9/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+++S+ NDYEM+F T+VIPC D+ ++P V++ FV + + + D +D++GV
Sbjct: 256 ANKQYTSVKNDYEMTFNSETSVIPC--DDSADVPMVQFEFVSIGELESKNKDTVLDIIGV 313
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + E++ VT K+N + KR I L+D S V+ TLWG++A+ FD S +PV+A+K AR
Sbjct: 314 CKNVEEVTKVTIKSNNREVSKRSIHLMDSSGKVVSTTLWGEDADKFDGSRQPVVAIKGAR 373
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGMGGGAAGN 184
+S+F GG++LS+ SS + +NPDIPE KL+ WF ++ +S+ GG GG N
Sbjct: 374 LSDF-GGRSLSVLSSSTVMINPDIPEAFKLRAWFDSEGQVVEGTSISESRGGGTGGGNTN 432
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ E++++ LG G+KADY + I R N Y+ACPSQDCNKKVIDQ NG++RCE
Sbjct: 433 WKSLLEVKNENLGHGEKADYFTSVATIVYLRKENCLYQACPSQDCNKKVIDQQNGLFRCE 492
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PA 299
KCNKEF F YRLIL I D+ + W+T FQ AESILG A +GE E +
Sbjct: 493 KCNKEFPNFKYRLILSANIADFGENQWITCFQESAESILGQNATYLGELKEKNEQAYDEV 552
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F Y FR R KLE YN +I
Sbjct: 553 FQNANFRSYTFRARVKLETYNDESRI 578
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 86/138 (62%), Gaps = 5/138 (3%)
Query: 653 MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCN 712
+ E++++ LG G+KADY + I R N Y+ACPSQDCNKKVIDQ NG++RCEKCN
Sbjct: 436 LLEVKNENLGHGEKADYFTSVATIVYLRKENCLYQACPSQDCNKKVIDQQNGLFRCEKCN 495
Query: 713 KEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKK 767
KEF F YRLIL I D+ + W+T FQ AESILG A +GE E + +
Sbjct: 496 KEFPNFKYRLILSANIADFGENQWITCFQESAESILGQNATYLGELKEKNEQAYDEVFQN 555
Query: 768 ALFTQYIFRLRAKLEHYN 785
A F Y FR R KLE YN
Sbjct: 556 ANFRSYTFRARVKLETYN 573
>gi|315057045|ref|XP_003177897.1| replication factor-A protein 1 [Arthroderma gypseum CBS 118893]
gi|311339743|gb|EFQ98945.1| replication factor-A protein 1 [Arthroderma gypseum CBS 118893]
Length = 598
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 177/528 (33%), Positives = 269/528 (50%), Gaps = 80/528 (15%)
Query: 330 NINSFA--MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKP 387
++N F ML TQLN+ +TDG L + V++ + VS V + +LII+ L+++
Sbjct: 48 DVNHFVRTMLPTQLNNYVTDGILRRGSFVRLTNFQVSVVKG-----KHLLIIMGLDVLSA 102
Query: 388 GTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNG--VHN------NVAIPR-QASAP 438
E +IG+P+PL + + Q+ ++ N HN NV PR +AP
Sbjct: 103 LGE-AERIGDPKPLEPKSGDEMGGQSTTLSSNEFYNAPQTHNPPQHFQNVQRPRPSGTAP 161
Query: 439 VVQTHPIVSLSPY-QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFN 497
I +LSP+ NKWTIKAR T+K+ I+ W N G GKLFS++LLD+SGEIRAT F
Sbjct: 162 NANIFSIEALSPFANNKWTIKARCTHKSNIKTWKNTFGEGKLFSVNLLDDSGEIRATAFK 221
Query: 498 DECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
D+C+ + + E+ VYYIS+ CT+K A K+FS++NNDYE++F TV+ ED+ ++P
Sbjct: 222 DQCDLLYPVFEEGAVYYISSPCTVKMAKKEFSNVNNDYELTFDRD-TVVEKAEDQ-NDVP 279
Query: 557 SVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
+++ F L + I IDVLGV D S VT KT+ K Y KR++TLVD S SV
Sbjct: 280 QIRFNFTSLGNLQSIDKGTTIDVLGVLKDVDTTSQVTSKTSGKPYDKRELTLVDNSGFSV 339
Query: 617 TMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL------------------------- 651
+T+WG A TFD + V+A K +VS+F G L
Sbjct: 340 RLTVWGNTATTFDTPPESVVAFKGVKVSDFGGRTLSLLSSGTITVDPDIEEAHRLKGWYD 399
Query: 652 ---------------------------LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNT 684
+ EI+D+++ D + +++ + + N
Sbjct: 400 AQGKANSFTAYSSGVTGGGGGSWPTFKTISEIRDEEIPSADSFENFALKATV-IHVKDNL 458
Query: 685 TYKACPSQDC-NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNE 743
Y ACP++ C NKKV ++ + CE+C + + YR IL + D T +W++ F
Sbjct: 459 CYPACPNEACKNKKVTRGDSDQWHCERCERSYANPKYRYILSLNASDHTGQIWLSCFDEA 518
Query: 744 AESILGVTAQEVGESTEDHPAL-----KKALFTQYIFRLRAKLEHYNK 786
+ I G+TA E+ E+ A K A + + F+ RAKL+ Y +
Sbjct: 519 GQMIFGMTADELMRIKEEDDAAANEITKGATYCTWNFKCRAKLDTYQE 566
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 116/321 (36%), Positives = 178/321 (55%), Gaps = 11/321 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++NNDYE++F T V+ ED+ ++P +++ F L + I IDVLGV
Sbjct: 248 AKKEFSNVNNDYELTFDRDT-VVEKAEDQ-NDVPQIRFNFTSLGNLQSIDKGTTIDVLGV 305
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D S VT KT+ K Y KR++TLVD S SV +T+WG A TFD + V+A K +
Sbjct: 306 LKDVDTTSQVTSKTSGKPYDKRELTLVDNSGFSVRLTVWGNTATTFDTPPESVVAFKGVK 365
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRTGGMGGGAAGN 184
VS+F GG+TLSL S ++++PDI E H+L+GW+ Q F S G GGG+
Sbjct: 366 VSDF-GGRTLSLLSSGTITVDPDIEEAHRLKGWYDAQGKANSFTAYSSGVTGGGGGSWPT 424
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDC-NKKVIDQNNGMYRC 243
+ EI+D+++ D + +++ + + N Y ACP++ C NKKV ++ + C
Sbjct: 425 FKTISEIRDEEIPSADSFENFALKATV-IHVKDNLCYPACPNEACKNKKVTRGDSDQWHC 483
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPAL--- 300
E+C + + YR IL + D T +W++ F + I G+TA E+ E+ A
Sbjct: 484 ERCERSYANPKYRYILSLNASDHTGQIWLSCFDEAGQMIFGMTADELMRIKEEDDAAANE 543
Query: 301 --KKALFTQYIFRLRAKLEHY 319
K A + + F+ RAKL+ Y
Sbjct: 544 ITKGATYCTWNFKCRAKLDTY 564
>gi|339232622|ref|XP_003381428.1| replication protein ADNA-binding subunit [Trichinella spiralis]
gi|316979779|gb|EFV62518.1| replication protein ADNA-binding subunit [Trichinella spiralis]
Length = 337
Score = 268 bits (686), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 139/349 (39%), Positives = 197/349 (56%), Gaps = 34/349 (9%)
Query: 440 VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE 499
V P+V +W I+ARVT KT IR W+N RG GKLFS+DL+DESGEIRAT FN E
Sbjct: 20 VAKCPLVVQMVCDFRWCIRARVTRKTDIRNWSNKRGDGKLFSVDLMDESGEIRATAFNQE 79
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK 559
C+R +++ +VY I +K AN++F+SI+NDYE++F+ T V PC ++ V +P +
Sbjct: 80 CDRLFSVLQPKQVYLIRGGIIKVANRQFTSIDNDYELAFSSETQVEPCKDENVHKLPLLS 139
Query: 560 YCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
+ FV I + + ID+LGV EL + +Q+ +KRD+ L+D ++ ++T+T
Sbjct: 140 FRFVKFDEIPRTNRKQLIDILGVVEKIGELEHKVARASQRELLKRDLFLIDDTKTAITLT 199
Query: 620 LWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQD---QQLGMGDKADYCSVRGII 676
LWG EAE F P+IAVK R+S+F L+ + D + +GD A+Y +V G +
Sbjct: 200 LWGNEAENFKQHGHPIIAVKGVRISDFGDKNLVPVALADPNRKTEAVGDNAEYFNVSGSV 259
Query: 677 QVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW 736
N Y ACPS DCNKK+ D N G+YRCEKCNK+F +F +RL+L + +
Sbjct: 260 MYISRENCMYPACPSPDCNKKIADLNTGLYRCEKCNKDFPSFKWRLLLSDV------DSY 313
Query: 737 VTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAKLEHYN 785
+F N L +IFRLRAK E YN
Sbjct: 314 DAVFDN-------------------------VLLKSFIFRLRAKQEIYN 337
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/315 (31%), Positives = 146/315 (46%), Gaps = 80/315 (25%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN++F+SI+NDYE++F+ T V PC ++ V +P + + FV I + + ID+LGV
Sbjct: 103 ANRQFTSIDNDYELAFSSETQVEPCKDENVHKLPLLSFRFVKFDEIPRTNRKQLIDILGV 162
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
EL + +Q+ +KRD+ L+D ++ ++T+TLWG EAE F P+IAVK R
Sbjct: 163 VEKIGELEHKVARASQRELLKRDLFLIDDTKTAITLTLWGNEAENFKQHGHPIIAVKGVR 222
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
+S+F + ++++ N + E V
Sbjct: 223 ISDFGDKNLVPVALAD---------------------PNRKTEAV--------------- 246
Query: 186 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 245
GD A+Y +V G + N Y ACPS DCNKK+ D N G+YRCEK
Sbjct: 247 -------------GDNAEYFNVSGSVMYISRENCMYPACPSPDCNKKIADLNTGLYRCEK 293
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALF 305
CNK+F +F +RL+L + + +F N L
Sbjct: 294 CNKDFPSFKWRLLLSDV------DSYDAVFDN-------------------------VLL 322
Query: 306 TQYIFRLRAKLEHYN 320
+IFRLRAK E YN
Sbjct: 323 KSFIFRLRAKQEIYN 337
>gi|452840129|gb|EME42067.1| hypothetical protein DOTSEDRAFT_72982 [Dothistroma septosporum
NZE10]
Length = 621
Score = 268 bits (686), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 171/529 (32%), Positives = 263/529 (49%), Gaps = 87/529 (16%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
M+A Q N +I DG L + +I ++ Y + V ++ +LII++L +++ E K
Sbjct: 58 GMIAIQSNHLINDGKLKKGSICRLNSYQANYVK-----DKYILIIIDLEVLEDYGEQD-K 111
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNV----------AIPRQASAPVVQTH- 443
+G P L+ + P N G+N N A+P + + H
Sbjct: 112 LGQPVALDNAKPEAQEDVKPQPGNIAGNNFYGNKPQQQAPQQQQRALPSRTNGASHGGHA 171
Query: 444 ---PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDEC 500
PI ++SPY +KWTIKAR T+K I+ W+N G GKLFS + LD+SGEIR T FND
Sbjct: 172 NITPIEAISPYTHKWTIKARCTSKGDIKTWHNKNGEGKLFSANFLDDSGEIRMTGFNDAV 231
Query: 501 NRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK 559
++++D +++ VYYIS+ C ++PA K+FS++NNDYE++ T I ED G +P V+
Sbjct: 232 DQWYDTLQEGSVYYISSPCRVQPAKKQFSNLNNDYELT-AEKDTQIEKAEDNDG-VPQVR 289
Query: 560 YCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
Y F + + EI D IDV+GV D +E+S + KT K Y KR++TLVD + +V +T
Sbjct: 290 YNFTTIAALQEIEKDSTIDVIGVLQDVSEVSEIVSKTTSKPYSKRELTLVDNTGYNVRLT 349
Query: 620 LWGKEAETFDASNKPVIAVK--------------------------------------AA 641
+WGK AET D + V+A K A
Sbjct: 350 VWGKTAETLDIQPESVVAFKGVKVSDFGGRSLSLLSSGSMSANPDIEEAYKLKGWYDGAG 409
Query: 642 RVSEFQGNLLLMR-----------------EIQDQQLGMGDKADYCSVRGIIQVFRGSNT 684
R F + M +++D+ LGM D D+ S++ I + N
Sbjct: 410 RTENFASHANTMATVGATSGGKGNDTKTIAQVRDEGLGMTDDTDWFSIKATIIYVKQDNF 469
Query: 685 TYKACPSQD---CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQ 741
Y AC + D CNKKVI+ G +RCEKC+K ++ YR I+ V + D T +W++ F
Sbjct: 470 AYPACRTTDPQPCNKKVIENEPGNWRCEKCDKSWDAPKYRYIMSVNVSDHTGQIWLSCFD 529
Query: 742 NEAESILGVTA------QEVGESTEDHPALKKALFTQYIFRLRAKLEHY 784
E I+G+ A +E G+ A A + FR++AK++++
Sbjct: 530 EVGERIMGMPANDLMAMKEEGDDKRVTDAFGDANCQTFNFRVKAKMDNF 578
Score = 206 bits (523), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 127/357 (35%), Positives = 192/357 (53%), Gaps = 19/357 (5%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K+FS++NNDYE++ T I ED G +P V+Y F + + EI D IDV+G
Sbjct: 254 PAKKQFSNLNNDYELT-AEKDTQIEKAEDNDG-VPQVRYNFTTIAALQEIEKDSTIDVIG 311
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V D +E+S + KT K Y KR++TLVD + +V +T+WGK AET D + V+A K
Sbjct: 312 VLQDVSEVSEIVSKTTSKPYSKRELTLVDNTGYNVRLTVWGKTAETLDIQPESVVAFKGV 371
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRT----GGMGGG 180
+VS+F G LS S+ + NPDI E +KL+GW+ T T G GG
Sbjct: 372 KVSDFGGRSLSLLSSGSMSA-NPDIEEAYKLKGWYDGAGRTENFASHANTMATVGATSGG 430
Query: 181 AAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD---CNKKVIDQN 237
+ + +++D+ LGM D D+ S++ I + N Y AC + D CNKKVI+
Sbjct: 431 KGNDTKTIAQVRDEGLGMTDDTDWFSIKATIIYVKQDNFAYPACRTTDPQPCNKKVIENE 490
Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA------QEVG 291
G +RCEKC+K ++ YR I+ V + D T +W++ F E I+G+ A +E G
Sbjct: 491 PGNWRCEKCDKSWDAPKYRYIMSVNVSDHTGQIWLSCFDEVGERIMGMPANDLMAMKEEG 550
Query: 292 ESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDGV---NINSFAMLATQLNDII 345
+ A A + FR++AK++++ +++ V N F+ AT+L II
Sbjct: 551 DDKRVTDAFGDANCQTFNFRVKAKMDNFQDQQRVRYQVQYANPLDFSREATKLAQII 607
>gi|402085897|gb|EJT80795.1| replication factor-A protein 1 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 628
Score = 268 bits (684), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 175/544 (32%), Positives = 273/544 (50%), Gaps = 110/544 (20%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
ML+TQ N II D L + +IV+++ Y S+ RS+L++L+L +I+ I K+
Sbjct: 70 MLSTQANHIIHDNLLYKGSIVRVRSY-----SASQLKGRSILVLLDLEVIE-SLGIYEKL 123
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGVHN-------------------NVAIPRQ-- 434
G P + + PA + T G G + +P +
Sbjct: 124 GEPTSIEAKGE-------PATSTTIGGTGFYGAKQEPEMEPEMEPEPKPQVRNQMPSRAA 176
Query: 435 --------------ASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLF 480
AS P +PI SLSPYQ+KWTIKARV++K+ IR W+ G GKLF
Sbjct: 177 GSGAGGGGGGGGGPASNPNAVIYPIESLSPYQHKWTIKARVSSKSDIRTWHKPSGEGKLF 236
Query: 481 SIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFT 539
S++LLDE+GEI+AT FN+EC +F+D++E+++VYYIS+ C ++ A K+F+++ NDYEM+F
Sbjct: 237 SVNLLDETGEIKATGFNNECEKFYDLLEENQVYYISSPCRVQMAKKQFTNLPNDYEMTFE 296
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
T I ED+ N+P V++ F ++ + E+ D +D++GV +AA+++ + K + K
Sbjct: 297 DGTQ-IEKAEDQ-SNVPQVRFNFCNIQELQEVEKDATVDLIGVLKEAADITQIVSKNSGK 354
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM------ 653
+ KR++TLVD S SV MT+WGK A FDA + VIA K A+V +F G L +
Sbjct: 355 NFDKRELTLVDDSGYSVRMTIWGKTALGFDAKPESVIAFKGAKVGDFGGRSLSLLSSGTM 414
Query: 654 ----------------------------------------------REIQDQQLGMGDKA 667
+++D+ LGM +
Sbjct: 415 TLDPDIPEAHRLKGWYDSSGRDNSFATHNTGSLGAATGRKDELKTVSQVKDEGLGM-ETD 473
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
Y +++ I R N Y AC S C+KKV++ +RCEKC YR I+ V
Sbjct: 474 TYFNLKATIVFIRQENFCYPACMSATCSKKVVEDGEN-WRCEKCQISHPRPEYRYIMSVN 532
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEV-GESTEDHPALKKALFT----QYIFRLRAKLE 782
+ D T +WV+ F + I+G +A E+ ED + +A + FR RAK++
Sbjct: 533 VNDHTGQLWVSCFDDVGRIIMGKSADELMALKEEDEESFTRAFEAANCRRLSFRCRAKMD 592
Query: 783 HYNK 786
+ +
Sbjct: 593 TFGE 596
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 116/328 (35%), Positives = 187/328 (57%), Gaps = 15/328 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+F+++ NDYEM+F T I ED+ N+P V++ F ++ + E+ D +D++GV
Sbjct: 280 AKKQFTNLPNDYEMTFEDGTQ-IEKAEDQ-SNVPQVRFNFCNIQELQEVEKDATVDLIGV 337
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+AA+++ + K + K + KR++TLVD S SV MT+WGK A FDA + VIA K A+
Sbjct: 338 LKEAADITQIVSKNSGKNFDKRELTLVDDSGYSVRMTIWGKTALGFDAKPESVIAFKGAK 397
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGG--GAA 182
V +F GG++LSL S ++L+PDIPE H+L+GW+ S+ + F + TG +G G
Sbjct: 398 VGDF-GGRSLSLLSSGTMTLDPDIPEAHRLKGWYDSSGRDNSF--ATHNTGSLGAATGRK 454
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
L + +++D+ LGM + Y +++ I R N Y AC S C+KKV++ +R
Sbjct: 455 DELKTVSQVKDEGLGM-ETDTYFNLKATIVFIRQENFCYPACMSATCSKKVVEDGEN-WR 512
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-GESTEDHPALK 301
CEKC YR I+ V + D T +WV+ F + I+G +A E+ ED +
Sbjct: 513 CEKCQISHPRPEYRYIMSVNVNDHTGQLWVSCFDDVGRIIMGKSADELMALKEEDEESFT 572
Query: 302 KALFT----QYIFRLRAKLEHYNGTKKI 325
+A + FR RAK++ + +++
Sbjct: 573 RAFEAANCRRLSFRCRAKMDTFGEVQRV 600
>gi|451853197|gb|EMD66491.1| hypothetical protein COCSADRAFT_138126 [Cochliobolus sativus
ND90Pr]
Length = 611
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 168/520 (32%), Positives = 269/520 (51%), Gaps = 83/520 (15%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
M+AT N+I+T G L + +IV++ +Y V ++++LII+EL ++ E+ KI
Sbjct: 62 MIATTANEIVTSGQLKKGSIVRLLKYNPQRVK-----DKNILIIMELEVLSQYGELD-KI 115
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQT----------HPI 445
G P+ L+T ++ PAA N G A Q S P Q+ +PI
Sbjct: 116 GQPEALDTKPADAQ----PAAIPGNNFYGSKPAPAPQPQRSLPTHQSNPGTSSHPHLYPI 171
Query: 446 VSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHD 505
SLSPY +KWTI+AR T+K+ ++EW+N +G+GKLFS++LLD++GEIRAT F + ++
Sbjct: 172 ESLSPYAHKWTIRARCTHKSDMKEWHNQKGTGKLFSVNLLDDTGEIRATAFTEVADKLFP 231
Query: 506 MIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP 564
+ E+ VYYIS C + A K FS++ NDYE+ F T V + + N P +++ F
Sbjct: 232 VFEEGVVYYISAPCRVTLAKKNFSNLPNDYELQFERDTEVEKAEDQD--NKPQIRFNFTK 289
Query: 565 LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE 624
+ + + D ID +GV + AE++++T K K + KR++TL D SQ SV +T+WGK
Sbjct: 290 IGDLTSVEKDTTIDTIGVLKEVAEVTTITSKNTNKDFSKRELTLADDSQTSVRLTIWGKT 349
Query: 625 AETFDASNKPVIAVKAARVSEF---------QGNLLLMREIQDQQ--------LGM---- 663
AE+FD + ++A K +VS+F G++++ +I + +G
Sbjct: 350 AESFDVPLESIVAFKGVKVSDFGGRSLSLLSSGSMMVDPDIDEAHKLRGWFNAVGQSATF 409
Query: 664 -----------GDKADYCSVRGIIQ-------------------VFRGSNTTYKACPSQD 693
G K D + II+ + S Y AC +Q
Sbjct: 410 STHQNMVSTTGGSKNDAKPISAIIEEEAYLQDTPSYMSLRASVLYVKDSTFAYPACSTQG 469
Query: 694 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 753
CNKKVI++N G + CEKC F YR +L +GD T ++W++ F ++I+G++A
Sbjct: 470 CNKKVIEENPGSWWCEKCQATFPEPNYRYVLSANVGDHTGTLWLSCFDEAGQTIVGMSAN 529
Query: 754 EVGESTEDHP---------ALKKALFTQYIFRLRAKLEHY 784
E + D +++A + FR+RAK+E Y
Sbjct: 530 EAMKMKMDDEENGTRNFVNVMQEATCKTFNFRVRAKMETY 569
Score = 196 bits (499), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/360 (32%), Positives = 189/360 (52%), Gaps = 17/360 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K FS++ NDYE+ F T V + + N P +++ F + + + D ID +GV
Sbjct: 250 AKKNFSNLPNDYELQFERDTEVEKAEDQD--NKPQIRFNFTKIGDLTSVEKDTTIDTIGV 307
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ AE++++T K K + KR++TL D SQ SV +T+WGK AE+FD + ++A K +
Sbjct: 308 LKEVAEVTTITSKNTNKDFSKRELTLADDSQTSVRLTIWGKTAESFDVPLESIVAFKGVK 367
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
VS+F G LS S++ ++PDI E HKL+GWF+ + Q GG+ +
Sbjct: 368 VSDFGGRSLSLLSSGSMM-VDPDIDEAHKLRGWFNAVGQSATFSTHQNMVSTTGGSKNDA 426
Query: 186 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 245
+ I +++ + D Y S+R + + S Y AC +Q CNKKVI++N G + CEK
Sbjct: 427 KPISAIIEEEAYLQDTPSYMSLRASVLYVKDSTFAYPACSTQGCNKKVIEENPGSWWCEK 486
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP------- 298
C F YR +L +GD T ++W++ F ++I+G++A E + D
Sbjct: 487 CQATFPEPNYRYVLSANVGDHTGTLWLSCFDEAGQTIVGMSANEAMKMKMDDEENGTRNF 546
Query: 299 --ALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNIN----SFAMLATQLNDIITDGTLSE 352
+++A + FR+RAK+E Y K P +N +FA A +L +I ++E
Sbjct: 547 VNVMQEATCKTFNFRVRAKMETYQDQPK-PRYQVMNIYPLNFAQEANKLAQLIKQYHMNE 605
>gi|360042651|emb|CCD78061.1| putative replication factor A 1, rfa1 [Schistosoma mansoni]
Length = 560
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 177/531 (33%), Positives = 276/531 (51%), Gaps = 89/531 (16%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEI---G 392
MLATQLN +I + L T++++++++ + + + N+ VLI+L+L+I+ GT+ G
Sbjct: 1 MLATQLNHLIEENKLVNNTVIRVRKHVCNNIQN----NKVVLIVLDLDIL--GTDDSSGG 54
Query: 393 FKIGNP----QPLNTNTDN-SSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVS 447
K P +P T + + Q+TP ++T +G + P + + PI S
Sbjct: 55 VKSEQPPTVAKPATTTSHSYEPEQKTPPKSSTGPFSG--GQPSTPGTPGCGLPRVFPIQS 112
Query: 448 LSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMI 507
L+PYQN+WTI+ARV+ K+ IR W+ GKLF+ L+DESGEIR T FN E ++F+DMI
Sbjct: 113 LNPYQNRWTIRARVSQKSAIRTWSKQGRDGKLFNFTLVDESGEIRVTGFNAEVDKFYDMI 172
Query: 508 EK-----DKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
E +KVYY+S LK ANK+F++ NNDYEM+ + V+PC + + ++P + F
Sbjct: 173 EASNMFVNKVYYVSRANLKAANKQFNTTNNDYEMTLHSDSQVLPCEDSDTSSLPETHFNF 232
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
+ + + SP +D++GV + E+ S+T K +Q+ KR++ LVD S V +TLWG
Sbjct: 233 ISIGKLDTQSPGSFVDIVGVVHECGEVQSITAKASQRELRKRELGLVDSSNCLVRLTLWG 292
Query: 623 KEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGI------- 675
+EAE F ++ PVI +KAA++S+F G L + + + + ++G
Sbjct: 293 EEAENFVGASHPVIVIKAAKISDFNGRSLSVSPTSSLLISPTNIPEAIRLKGWYEHEGRF 352
Query: 676 --IQVFR----GSNTTYKACPS-----------QD----------------CNKKVI--D 700
+ FR GS+ S QD C V+
Sbjct: 353 SNFETFRSEMVGSSGGADGVSSSSGVLGGWNLLQDVKASGVGANVKADYFTCKATVVFMK 412
Query: 701 QNNGMYRC---EKCNK---EFNTFTYR--------------LILPVMIGDWTNSVWVTLF 740
+ N MY+ E CNK + YR L+L I D T +WVT F
Sbjct: 413 KENFMYQACSTEGCNKKVIDLGNGLYRCEKCARETPDCKWRLLLMAKIADITGDLWVTCF 472
Query: 741 QNEAESILGVTAQEVG--ESTEDHPALKKAL----FTQYIFRLRAKLEHYN 785
Q+ AE +LG TA+++G +ST+D L+K F +IFRLRAK++ YN
Sbjct: 473 QDAAEVLLGQTAEKLGTIKSTQDETQLEKVFIESAFNSWIFRLRAKVDRYN 523
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 128/337 (37%), Positives = 205/337 (60%), Gaps = 18/337 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F++ NNDYEM+ + V+PC + + ++P + F+ + + SP +D++GV
Sbjct: 193 ANKQFNTTNNDYEMTLHSDSQVLPCEDSDTSSLPETHFNFISIGKLDTQSPGSFVDIVGV 252
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ E+ S+T K +Q+ KR++ LVD S V +TLWG+EAE F ++ PVI +KAA+
Sbjct: 253 VHECGEVQSITAKASQRELRKRELGLVDSSNCLVRLTLWGEEAENFVGASHPVIVIKAAK 312
Query: 126 VSEFQGGKTLSLSMSSVLSLNP-DIPECHKLQGWFSTQTN-TRFEPV-SQRTGGMGG--- 179
+S+F G++LS+S +S L ++P +IPE +L+GW+ + + FE S+ G GG
Sbjct: 313 ISDFN-GRSLSVSPTSSLLISPTNIPEAIRLKGWYEHEGRFSNFETFRSEMVGSSGGADG 371
Query: 180 -----GAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVI 234
G G L+++++ +G KADY + + + + N Y+AC ++ CNKKVI
Sbjct: 372 VSSSSGVLGGWNLLQDVKASGVGANVKADYFTCKATVVFMKKENFMYQACSTEGCNKKVI 431
Query: 235 DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG--E 292
D NG+YRCEKC +E +RL+L I D T +WVT FQ+ AE +LG TA+++G +
Sbjct: 432 DLGNGLYRCEKCARETPDCKWRLLLMAKIADITGDLWVTCFQDAAEVLLGQTAEKLGTIK 491
Query: 293 STEDHPALKKAL----FTQYIFRLRAKLEHYNGTKKI 325
ST+D L+K F +IFRLRAK++ YN +++
Sbjct: 492 STQDETQLEKVFIESAFNSWIFRLRAKVDRYNDEERL 528
>gi|339232632|ref|XP_003381433.1| replication protein ADNA-binding subunit [Trichinella spiralis]
gi|316979773|gb|EFV62513.1| replication protein ADNA-binding subunit [Trichinella spiralis]
Length = 345
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 193/335 (57%), Gaps = 34/335 (10%)
Query: 454 KWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVY 513
+W I+ARVT KT IR W+N RG GKLFS+DL+DESGEIRAT FN EC+R +++ +VY
Sbjct: 4 RWCIRARVTRKTDIRNWSNKRGDGKLFSVDLMDESGEIRATAFNQECDRLFSVLQPKQVY 63
Query: 514 YISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISP 573
I +K AN++F+SI+NDYE++F+ T V PC ++ V +P + + FV I +
Sbjct: 64 LIRGGIIKVANRQFTSIDNDYELAFSSETQVEPCKDENVHKLPLLSFRFVKFDEIPRTNR 123
Query: 574 DENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNK 633
+ ID+LGV EL + +Q+ +KRD+ L+D ++ ++T+TLWG EAE F
Sbjct: 124 KQLIDILGVVEKIGELEHKVARASQRELLKRDLFLIDDTKTAITLTLWGNEAENFKQHGH 183
Query: 634 PVIAVKAARVSEFQGNLLLMREIQD---QQLGMGDKADYCSVRGIIQVFRGSNTTYKACP 690
P+IAVK R+S+F L+ + D + +GD A+Y +V G + N Y ACP
Sbjct: 184 PIIAVKGVRISDFGDKNLVPVALADPNRKTETVGDNAEYFNVSGSVMYISRENCMYPACP 243
Query: 691 SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGV 750
S DCNKK+ D N G+YRCEKCNK+F +F +RL+L + + +F N
Sbjct: 244 SPDCNKKIADLNTGLYRCEKCNKDFPSFKWRLLLSDV------DSYDAVFDN-------- 289
Query: 751 TAQEVGESTEDHPALKKALFTQYIFRLRAKLEHYN 785
L +IFRLRAK E YN
Sbjct: 290 -----------------VLLKSFIFRLRAKQEIYN 307
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/347 (29%), Positives = 157/347 (45%), Gaps = 86/347 (24%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN++F+SI+NDYE++F+ T V PC ++ V +P + + FV I + + ID+LGV
Sbjct: 73 ANRQFTSIDNDYELAFSSETQVEPCKDENVHKLPLLSFRFVKFDEIPRTNRKQLIDILGV 132
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
EL + +Q+ +KRD+ L+D ++ ++T+TLWG EAE F P+IAVK R
Sbjct: 133 VEKIGELEHKVARASQRELLKRDLFLIDDTKTAITLTLWGNEAENFKQHGHPIIAVKGVR 192
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
+S+F + ++++ N + E V
Sbjct: 193 ISDFGDKNLVPVALAD---------------------PNRKTETV--------------- 216
Query: 186 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 245
GD A+Y +V G + N Y ACPS DCNKK+ D N G+YRCEK
Sbjct: 217 -------------GDNAEYFNVSGSVMYISRENCMYPACPSPDCNKKIADLNTGLYRCEK 263
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALF 305
CNK+F +F +RL+L + + +F N L
Sbjct: 264 CNKDFPSFKWRLLLSDV------DSYDAVFDN-------------------------VLL 292
Query: 306 TQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDIITDGTLSE 352
+IFRLRAK E YN D + + M ++N + G + E
Sbjct: 293 KSFIFRLRAKQEIYN------DEMRMKYVCMQVYEINKLQYIGYVEE 333
>gi|330930966|ref|XP_003303215.1| hypothetical protein PTT_15345 [Pyrenophora teres f. teres 0-1]
gi|311320921|gb|EFQ88698.1| hypothetical protein PTT_15345 [Pyrenophora teres f. teres 0-1]
Length = 587
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 163/510 (31%), Positives = 256/510 (50%), Gaps = 87/510 (17%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
M+AT NDI+ G L + +IV++ +Y V +++LII++L +P G
Sbjct: 62 MIATSANDIVMSGQLKKGSIVRLLKYNPQRVKE-----KNILIIMDL---EPAAISGNNF 113
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKW 455
+P PA S H + P AS P +PI SLSPY +KW
Sbjct: 114 YGSKP------------APAPAQAQRSLPTHQ--SNPGTASHP--NLYPIESLSPYAHKW 157
Query: 456 TIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYI 515
TI+AR T K+ ++EW NA+G+GKLFS++LLD++GEIRAT F + ++ + + E VYYI
Sbjct: 158 TIRARCTAKSDMKEWTNAKGAGKLFSVNLLDDTGEIRATAFTEVADKLYPIFEVGTVYYI 217
Query: 516 SN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPD 574
S C + A K+FS++ NDYE+ F T V + E N P +++ F + ++ + D
Sbjct: 218 SAPCRVTLAKKQFSNLPNDYELQFERDTEVEKAEDQE--NKPQIRFNFTKIGDLSSVEKD 275
Query: 575 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKP 634
ID +GV + A+++++T KT K + KR++TL D SQ SV +T+WGK AE+FDA +
Sbjct: 276 TTIDTIGVLKEVADVTTITSKTTNKDFSKRELTLADDSQTSVRLTIWGKTAESFDAPLES 335
Query: 635 VIAVKAARVSEF------------------------------------------------ 646
+IA K +VS+F
Sbjct: 336 IIAFKGVKVSDFGGRSLSLLSSGSMMVDPDIDDAHRLRGWFDAVGQNATFSTHQNMASAA 395
Query: 647 ---QGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNN 703
+ + ++ I +++ + D Y S+R + + + Y AC +Q CNKKVI+ N
Sbjct: 396 GGSKNDAKIISVIMEEEAYLQDTPTYMSLRASVLYVKNTTVAYPACSTQGCNKKVIEDNP 455
Query: 704 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP 763
G + CEKC F YR +L V +GD T ++W++ F I+G++A E + D
Sbjct: 456 GNWWCEKCQASFPEPQYRYVLSVNVGDHTGTLWLSCFDEAGAEIVGMSANEAMKLKMDDE 515
Query: 764 ---------ALKKALFTQYIFRLRAKLEHY 784
A+++A + FR+RAK+E Y
Sbjct: 516 ENGTTNFITAMQEATCQTFNFRVRAKMETY 545
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 110/328 (33%), Positives = 177/328 (53%), Gaps = 12/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ NDYE+ F T V + E N P +++ F + ++ + D ID +GV
Sbjct: 226 AKKQFSNLPNDYELQFERDTEVEKAEDQE--NKPQIRFNFTKIGDLSSVEKDTTIDTIGV 283
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ A+++++T KT K + KR++TL D SQ SV +T+WGK AE+FDA + +IA K +
Sbjct: 284 LKEVADVTTITSKTTNKDFSKRELTLADDSQTSVRLTIWGKTAESFDAPLESIIAFKGVK 343
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
VS+F G LS S++ ++PDI + H+L+GWF Q GG+ +
Sbjct: 344 VSDFGGRSLSLLSSGSMM-VDPDIDDAHRLRGWFDAVGQNATFSTHQNMASAAGGSKNDA 402
Query: 186 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 245
++ I +++ + D Y S+R + + + Y AC +Q CNKKVI+ N G + CEK
Sbjct: 403 KIISVIMEEEAYLQDTPTYMSLRASVLYVKNTTVAYPACSTQGCNKKVIEDNPGNWWCEK 462
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP------- 298
C F YR +L V +GD T ++W++ F I+G++A E + D
Sbjct: 463 CQASFPEPQYRYVLSVNVGDHTGTLWLSCFDEAGAEIVGMSANEAMKLKMDDEENGTTNF 522
Query: 299 --ALKKALFTQYIFRLRAKLEHYNGTKK 324
A+++A + FR+RAK+E Y K
Sbjct: 523 ITAMQEATCQTFNFRVRAKMETYQDQPK 550
>gi|159129170|gb|EDP54284.1| replication protein A 70 kDa DNA-binding subunit [Aspergillus
fumigatus A1163]
Length = 529
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 157/484 (32%), Positives = 255/484 (52%), Gaps = 71/484 (14%)
Query: 368 SGSATNRSVLIILELNIIKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNG--V 425
+ S + +LIIL+L +++ E KIG P+PL + Q P + G G V
Sbjct: 15 ANSVKGKKILIILDLEVLQELGE-AEKIGEPRPLENKLEEDEKPQ-PTTISGGGFYGSKV 72
Query: 426 HNNVAIPR--QASAPVVQTH----PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
N PR A + + +H PI ++SPY +KWTIKAR T+K+ I+ W+N G+L
Sbjct: 73 QNQRGEPRVQPARSSLTSSHATIYPIEAISPYSHKWTIKARCTSKSAIKTWHNRNSEGRL 132
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSF 538
FS++LLD+SGEIRAT FN++C+ +D+ + VYYIS+ C ++ A K+F+++NNDYE++F
Sbjct: 133 FSVNLLDDSGEIRATGFNEQCDLLYDVFHEGGVYYISSPCRVQIAKKQFTNLNNDYELTF 192
Query: 539 THSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQ 598
TV+ ED+ ++P V++ F + + + D ID++GV D E + + KT
Sbjct: 193 -EKDTVVEKAEDQ-SDVPQVRFNFTTVGDLQSVEKDTTIDIIGVLKDVGETTQIVSKTTS 250
Query: 599 KTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEF------------ 646
K Y KR++TLVD S SV +T+WG A F+A+ + VIA K +VS+F
Sbjct: 251 KPYDKRELTLVDSSGFSVRLTIWGSTALNFNATPESVIAFKGVKVSDFGGRSLSLLSSGS 310
Query: 647 -------------------QG----------------------NLLLMREIQDQQLGMGD 665
QG +L + +++++QLGM +
Sbjct: 311 MTVDPDIEEAHRLKGWYDAQGRHETFASHATMSNASSSAKRLDHLKTIAQVREEQLGMSE 370
Query: 666 KADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILP 725
A Y S++G + + N Y AC S+ CNKKV + + G +RCE C+K YR I+
Sbjct: 371 DAVYFSLKGTVIYIKQDNMCYPACLSEGCNKKVTELDPGQWRCESCDKTHPRPEYRYIML 430
Query: 726 VMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQ-----YIFRLRAK 780
+ + D T +W++ F + ++G +A ++ + ++ +F + + FR RAK
Sbjct: 431 INVSDHTGQLWLSCFDEVGKQLMGTSADQLMDLRQNGEKAAGDIFQEANCRTWNFRCRAK 490
Query: 781 LEHY 784
L+H+
Sbjct: 491 LDHF 494
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 111/329 (33%), Positives = 188/329 (57%), Gaps = 14/329 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+F+++NNDYE++F TV+ ED+ ++P V++ F + + + D ID++GV
Sbjct: 177 AKKQFTNLNNDYELTF-EKDTVVEKAEDQ-SDVPQVRFNFTTVGDLQSVEKDTTIDIIGV 234
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D E + + KT K Y KR++TLVD S SV +T+WG A F+A+ + VIA K +
Sbjct: 235 LKDVGETTQIVSKTTSKPYDKRELTLVDSSGFSVRLTIWGSTALNFNATPESVIAFKGVK 294
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEP-VSQRTGGMGGGAAGN 184
VS+F G++LSL S ++++PDI E H+L+GW+ Q R E S T +A
Sbjct: 295 VSDFG-GRSLSLLSSGSMTVDPDIEEAHRLKGWYDAQ--GRHETFASHATMSNASSSAKR 351
Query: 185 LLLMR---EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMY 241
L ++ +++++QLGM + A Y S++G + + N Y AC S+ CNKKV + + G +
Sbjct: 352 LDHLKTIAQVREEQLGMSEDAVYFSLKGTVIYIKQDNMCYPACLSEGCNKKVTELDPGQW 411
Query: 242 RCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALK 301
RCE C+K YR I+ + + D T +W++ F + ++G +A ++ + ++
Sbjct: 412 RCESCDKTHPRPEYRYIMLINVSDHTGQLWLSCFDEVGKQLMGTSADQLMDLRQNGEKAA 471
Query: 302 KALFTQ-----YIFRLRAKLEHYNGTKKI 325
+F + + FR RAKL+H+ ++I
Sbjct: 472 GDIFQEANCRTWNFRCRAKLDHFGDQQRI 500
>gi|70989823|ref|XP_749761.1| replication protein A 70 kDa DNA-binding subunit [Aspergillus
fumigatus Af293]
gi|66847392|gb|EAL87723.1| replication protein A 70 kDa DNA-binding subunit [Aspergillus
fumigatus Af293]
Length = 529
Score = 266 bits (680), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 157/484 (32%), Positives = 254/484 (52%), Gaps = 71/484 (14%)
Query: 368 SGSATNRSVLIILELNIIKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNG--V 425
+ S + +LIIL+L +++ E KIG P+PL + Q P + G G V
Sbjct: 15 ANSVKGKKILIILDLEVLQELGE-AEKIGEPRPLENKLEEDEKPQ-PTTISGGGFYGSKV 72
Query: 426 HNNVAIPR--QASAPVVQTH----PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
N PR A + + +H PI ++SPY +KWTIKAR T K+ I+ W+N G+L
Sbjct: 73 QNQRGEPRVQPARSSLTSSHATIYPIEAISPYSHKWTIKARCTTKSAIKTWHNRNSEGRL 132
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSF 538
FS++LLD+SGEIRAT FN++C+ +D+ + VYYIS+ C ++ A K+F+++NNDYE++F
Sbjct: 133 FSVNLLDDSGEIRATGFNEQCDLLYDVFHEGGVYYISSPCRVQIAKKQFTNLNNDYELTF 192
Query: 539 THSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQ 598
TV+ ED+ ++P V++ F + + + D ID++GV D E + + KT
Sbjct: 193 -EKDTVVEKAEDQ-SDVPQVRFNFTTVGDLQSVEKDTTIDIIGVLKDVGETTQIVSKTTS 250
Query: 599 KTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEF------------ 646
K Y KR++TLVD S SV +T+WG A F+A+ + VIA K +VS+F
Sbjct: 251 KPYDKRELTLVDSSGFSVRLTIWGSTALNFNATPESVIAFKGVKVSDFGGRSLSLLSSGS 310
Query: 647 -------------------QG----------------------NLLLMREIQDQQLGMGD 665
QG +L + +++++QLGM +
Sbjct: 311 MTVDPDIEEAHRLKGWYDAQGRHETFASHATMSNASSSAKRLDHLKTIAQVREEQLGMSE 370
Query: 666 KADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILP 725
A Y S++G + + N Y AC S+ CNKKV + + G +RCE C+K YR I+
Sbjct: 371 DAVYFSLKGTVIYIKQDNMCYPACLSEGCNKKVTELDPGQWRCESCDKTHPRPEYRYIML 430
Query: 726 VMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQ-----YIFRLRAK 780
+ + D T +W++ F + ++G +A ++ + ++ +F + + FR RAK
Sbjct: 431 INVSDHTGQLWLSCFDEVGKQLMGTSADQLMDLRQNGEKAAGDIFQEANCRTWNFRCRAK 490
Query: 781 LEHY 784
L+H+
Sbjct: 491 LDHF 494
Score = 193 bits (490), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 111/329 (33%), Positives = 188/329 (57%), Gaps = 14/329 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+F+++NNDYE++F TV+ ED+ ++P V++ F + + + D ID++GV
Sbjct: 177 AKKQFTNLNNDYELTF-EKDTVVEKAEDQ-SDVPQVRFNFTTVGDLQSVEKDTTIDIIGV 234
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D E + + KT K Y KR++TLVD S SV +T+WG A F+A+ + VIA K +
Sbjct: 235 LKDVGETTQIVSKTTSKPYDKRELTLVDSSGFSVRLTIWGSTALNFNATPESVIAFKGVK 294
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEP-VSQRTGGMGGGAAGN 184
VS+F G++LSL S ++++PDI E H+L+GW+ Q R E S T +A
Sbjct: 295 VSDFG-GRSLSLLSSGSMTVDPDIEEAHRLKGWYDAQ--GRHETFASHATMSNASSSAKR 351
Query: 185 LLLMR---EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMY 241
L ++ +++++QLGM + A Y S++G + + N Y AC S+ CNKKV + + G +
Sbjct: 352 LDHLKTIAQVREEQLGMSEDAVYFSLKGTVIYIKQDNMCYPACLSEGCNKKVTELDPGQW 411
Query: 242 RCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALK 301
RCE C+K YR I+ + + D T +W++ F + ++G +A ++ + ++
Sbjct: 412 RCESCDKTHPRPEYRYIMLINVSDHTGQLWLSCFDEVGKQLMGTSADQLMDLRQNGEKAA 471
Query: 302 KALFTQ-----YIFRLRAKLEHYNGTKKI 325
+F + + FR RAKL+H+ ++I
Sbjct: 472 GDIFQEANCRTWNFRCRAKLDHFGDQQRI 500
>gi|345565697|gb|EGX48646.1| hypothetical protein AOL_s00080g275 [Arthrobotrys oligospora ATCC
24927]
Length = 606
Score = 266 bits (679), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 162/533 (30%), Positives = 266/533 (49%), Gaps = 85/533 (15%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG++ M+A+Q N ++ + + + +IV++K Y +G ++SVLI+L + +
Sbjct: 52 VSDGIHFTQ-GMIASQSNHLMAENKIEKGSIVRMKEY-----EAGKVKDKSVLIVLAVEL 105
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNN---------VAIPRQA 435
+ TE KIG+P+ + ++ + QQ A T SN N A P +
Sbjct: 106 AQEATEE--KIGDPKQVTPDSASELAQQRAAQQPTTTSNFYGNKPANAGRGAGGAGPSRG 163
Query: 436 SAPVVQTHP-----IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE 490
+ + I SLSPYQN+WTIKAR ++ I+ W NA+G GKLF++ D+S E
Sbjct: 164 AGQSSRGQSAGISLIESLSPYQNRWTIKARCIHRGEIKNWKNAKGDGKLFAVSFKDQSAE 223
Query: 491 IRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED 550
I+AT F D+ + + + E+ VY IS C ++ A ++FS+I+NDYE+ F + V ++D
Sbjct: 224 IKATGFGDQVDSLYHVFEEGSVYLISKCKVQIAKRQFSNIDNDYELVFDRDSEVQKVDDD 283
Query: 551 EVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVD 610
E +P +Y FV L+ + D IDV+G+ + E S+ QK + KRD+ LVD
Sbjct: 284 E--GVPQQQYNFVTLQDLQNTEKDAQIDVIGILKEVGESDSIVSAKTQKAFTKRDLHLVD 341
Query: 611 QSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM----------------- 653
+ +V +T+WGK AE F+ + V+AVK +VS+F G L M
Sbjct: 342 DTGYTVKLTVWGKSAEKFEIMPESVLAVKGVKVSDFGGRSLSMQNSSTMQVDPDLEEAHR 401
Query: 654 ------------------------------------REIQDQQLGMGDKADYCSVRGIIQ 677
++ D+ +G G+ AD+ +++ I
Sbjct: 402 LKGWFSSEGRDTNFNSHKGLSTGGADGNRPSVFKTVQQASDENIGFGETADFYTLKATIS 461
Query: 678 VFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWV 737
+ +Y AC ++ C+KKV+ + NG +RCEKC+ + YR IL D T W+
Sbjct: 462 YIKNEGHSYPACKTEGCSKKVV-EFNGSWRCEKCSVNWPEPEYRYILTCSAYDHTGQTWL 520
Query: 738 TLFQNEAESILGVTA------QEVGESTEDHPALKKALFTQYIFRLRAKLEHY 784
+F + + I+G TA Q+ ES+ + +KKA ++FR+RA+ E Y
Sbjct: 521 NIFDDAGKVIMGTTASDLHAMQDYDESSYE-ATMKKAASQTWMFRIRAQQEVY 572
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 120/354 (33%), Positives = 200/354 (56%), Gaps = 22/354 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A ++FS+I+NDYE+ F + V ++DE +P +Y FV L+ + D IDV+G+
Sbjct: 256 AKRQFSNIDNDYELVFDRDSEVQKVDDDE--GVPQQQYNFVTLQDLQNTEKDAQIDVIGI 313
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ E S+ QK + KRD+ LVD + +V +T+WGK AE F+ + V+AVK +
Sbjct: 314 LKEVGESDSIVSAKTQKAFTKRDLHLVDDTGYTVKLTVWGKSAEKFEIMPESVLAVKGVK 373
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAGN 184
VS+F GG++LS+ SS + ++PD+ E H+L+GWFS++ +T F + G GGA GN
Sbjct: 374 VSDF-GGRSLSMQNSSTMQVDPDLEEAHRLKGWFSSEGRDTNF---NSHKGLSTGGADGN 429
Query: 185 ----LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGM 240
+++ D+ +G G+ AD+ +++ I + +Y AC ++ C+KKV+ + NG
Sbjct: 430 RPSVFKTVQQASDENIGFGETADFYTLKATISYIKNEGHSYPACKTEGCSKKVV-EFNGS 488
Query: 241 YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA------QEVGEST 294
+RCEKC+ + YR IL D T W+ +F + + I+G TA Q+ ES+
Sbjct: 489 WRCEKCSVNWPEPEYRYILTCSAYDHTGQTWLNIFDDAGKVIMGTTASDLHAMQDYDESS 548
Query: 295 EDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDGV---NINSFAMLATQLNDII 345
+ +KKA ++FR+RA+ E Y ++ + V +A AT+L ++I
Sbjct: 549 YE-ATMKKAASQTWMFRIRAQQEVYQDVPRVRNRVLSAQKIDYAAEATRLINMI 601
>gi|340923669|gb|EGS18572.1| putative DNA replication protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 617
Score = 265 bits (677), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 167/533 (31%), Positives = 263/533 (49%), Gaps = 101/533 (18%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGF-- 393
MLATQ N ++ DG+L IV++K+Y + S + VL++L+L +I T +G
Sbjct: 68 MLATQANHVVHDGSLQRNCIVRLKQY-----QAQSVKGKWVLVVLDLEVI---TSLGTPD 119
Query: 394 KIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQ------------ 441
KIG P+ L+T + T N G + P+++ + V +
Sbjct: 120 KIGEPKGLDT-------RDTEPQANAMGGTSFYGAKQEPQESKSQVQRQISTGSTRSNGS 172
Query: 442 -----------THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE 490
+P+ +LSPY +KWTIK RV +K PIR W+ A G GKLF++ L DE+G+
Sbjct: 173 GGGGMSHNGSVIYPVEALSPYNSKWTIKVRVRSKPPIRTWHKASGEGKLFNVILFDETGD 232
Query: 491 IRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED 550
IR T FND +R++D++++ +VYYIS C ++ A +K + +DYEM T + +D
Sbjct: 233 IRMTGFNDAVDRWYDVLQEGQVYYISGCKVRMAQRKLDARASDYEMVIDRDTVIEKAEDD 292
Query: 551 EVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVD 610
G++P V+ ++ + + + +DVLGV + + S+ KT QK + KRDITLVD
Sbjct: 293 --GSVPQVRLNLCNIQDLQNVEANTIVDVLGVIKEVGPVDSIISKTTQKPFDKRDITLVD 350
Query: 611 QSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG---------------------- 648
+ SV +TLWGK+A +FDA+ + ++A K +VS+F G
Sbjct: 351 DTGYSVRLTLWGKQATSFDATEESIVAFKDCKVSDFNGRNLSLLSSGSWSADPDIPEAHR 410
Query: 649 ------------NLLLMREIQDQQLGMGDKAD-------------------YCSVRGIIQ 677
+ L + + G K D Y S++G I
Sbjct: 411 LKGWYDSMGRTQSFLTHKSMSSVGAATGRKDDFKTVRQVKDENLGMGEQPDYFSLKGTIV 470
Query: 678 VFRGSNTTYKACPSQD--CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSV 735
+ N Y +C + + CNKKV D +G +RCEKC+ + YR L VM+ D T +
Sbjct: 471 AIKQDNFCYPSCLTDNPPCNKKVTDMGDGTWRCEKCDVTHDRARYRYNLGVMVSDHTGHL 530
Query: 736 WVTLFQNEAESILGVTAQEVGESTEDHPAL----KKALFTQYIFRLRAKLEHY 784
WVT F + A ++G TA E+ D AL ++A + FR+RAK++ +
Sbjct: 531 WVTCFDDIANVVMGRTADELVSLQGDKAALDAIFEEASCQKLTFRVRAKMDTF 583
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 115/328 (35%), Positives = 185/328 (56%), Gaps = 11/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A +K + +DYEM T + +D G++P V+ ++ + + + +DVLGV
Sbjct: 265 AQRKLDARASDYEMVIDRDTVIEKAEDD--GSVPQVRLNLCNIQDLQNVEANTIVDVLGV 322
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ + S+ KT QK + KRDITLVD + SV +TLWGK+A +FDA+ + ++A K +
Sbjct: 323 IKEVGPVDSIISKTTQKPFDKRDITLVDDTGYSVRLTLWGKQATSFDATEESIVAFKDCK 382
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST--QTNTRFEPVSQRTGGMGGGAAG 183
VS+F G+ LSL S S +PDIPE H+L+GW+ + +T + S + G G
Sbjct: 383 VSDF-NGRNLSLLSSGSWSADPDIPEAHRLKGWYDSMGRTQSFLTHKSMSSVGAATGRKD 441
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD--CNKKVIDQNNGMY 241
+ +R+++D+ LGMG++ DY S++G I + N Y +C + + CNKKV D +G +
Sbjct: 442 DFKTVRQVKDENLGMGEQPDYFSLKGTIVAIKQDNFCYPSCLTDNPPCNKKVTDMGDGTW 501
Query: 242 RCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPAL- 300
RCEKC+ + YR L VM+ D T +WVT F + A ++G TA E+ D AL
Sbjct: 502 RCEKCDVTHDRARYRYNLGVMVSDHTGHLWVTCFDDIANVVMGRTADELVSLQGDKAALD 561
Query: 301 ---KKALFTQYIFRLRAKLEHYNGTKKI 325
++A + FR+RAK++ + ++
Sbjct: 562 AIFEEASCQKLTFRVRAKMDTFGDMPRV 589
>gi|389748589|gb|EIM89766.1| replication factor-a protein [Stereum hirsutum FP-91666 SS1]
Length = 596
Score = 264 bits (675), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 176/536 (32%), Positives = 275/536 (51%), Gaps = 101/536 (18%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DGVN +MLATQLN ++ T+++ TI ++ + +S N+ ++++L L++
Sbjct: 53 ISDGVNFIQ-SMLATQLNSLVEADTITKNTICKL-----TNMSCNVIQNKRLVVVLGLSV 106
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQT-- 442
++ E KIGNP T+ TPAA+N ++ P + P V
Sbjct: 107 VQKDAE---KIGNPAAFPTDE-----ATTPAASNITPTSA-------PSATTTPSVPQQP 151
Query: 443 -------------HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG 489
PI LSPYQN WTIKARV K+ IR ++N RG GK F++ L+D+SG
Sbjct: 152 RQQQSSRGTRNNIFPIEGLSPYQNNWTIKARVIQKSDIRTYSNQRGEGKFFNVTLMDDSG 211
Query: 490 EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNE 549
EI+ T FN + +D + +DKVYYIS + + +KFSS +YE+S +T + C++
Sbjct: 212 EIKGTGFNAVADELYDKLVEDKVYYISKARVNLSKRKFSSAQ-EYELSLERNTEIEECHD 270
Query: 550 DEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLV 609
N+P VKY F+ L + E+ D DV+GV D +E+S + KT Q+T KR++TLV
Sbjct: 271 --TSNLPVVKYNFIELGNLEELPKDSICDVIGVVKDVSEVSEIQTKT-QRTLSKRELTLV 327
Query: 610 DQSQASVTMTLWGKEAETFDASNKPVIAVKAARV-------------------------- 643
D S SV +TLWGK+AE ++AS VIA K +V
Sbjct: 328 DSSAFSVRLTLWGKQAEQYNASPNSVIAFKGVKVGDFGGRSLSMFSSSTMAINPDMPEAH 387
Query: 644 ------------SEFQGN-----------------LLLMREIQDQQLGMGDKADYCSVRG 674
++FQ + + + ++++ QLG DK +Y S R
Sbjct: 388 NIRGWYDDIGTSTQFQAHTSSMTSAGTGGTINRSEMRTLNDVKESQLGSSDKVEYFSCRA 447
Query: 675 IIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNS 734
+ RG N +Y AC ++ C+KKV++ ++G +RCEKC++ F T TYR ++ + + D++
Sbjct: 448 TVMHIRGENISYPACGTEGCSKKVVEGHDG-WRCEKCDRSFETPTYRYMIQMAVADYSGQ 506
Query: 735 VWVTLFQNEAESILGVTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKLEHYN 785
W++ F + + G+TA E+ + E A L+KA Y F RAK + +N
Sbjct: 507 AWLSGFNDVGLIVFGMTANELHDIKERDDAIYTAILQKATCNTYNFACRAKQDTFN 562
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/334 (37%), Positives = 200/334 (59%), Gaps = 15/334 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
+ +KFSS +YE+S +T + C++ N+P VKY F+ L + E+ D DV+GV
Sbjct: 245 SKRKFSSAQ-EYELSLERNTEIEECHD--TSNLPVVKYNFIELGNLEELPKDSICDVIGV 301
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D +E+S + KT Q+T KR++TLVD S SV +TLWGK+AE ++AS VIA K +
Sbjct: 302 VKDVSEVSEIQTKT-QRTLSKRELTLVDSSAFSVRLTLWGKQAEQYNASPNSVIAFKGVK 360
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGGGAAGN 184
V +F GG++LS+ SS +++NPD+PE H ++GW+ T+T+F+ + G G N
Sbjct: 361 VGDF-GGRSLSMFSSSTMAINPDMPEAHNIRGWYDDIGTSTQFQAHTSSMTSAGTGGTIN 419
Query: 185 LLLMR---EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMY 241
MR ++++ QLG DK +Y S R + RG N +Y AC ++ C+KKV++ ++G +
Sbjct: 420 RSEMRTLNDVKESQLGSSDKVEYFSCRATVMHIRGENISYPACGTEGCSKKVVEGHDG-W 478
Query: 242 RCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-- 299
RCEKC++ F T TYR ++ + + D++ W++ F + + G+TA E+ + E A
Sbjct: 479 RCEKCDRSFETPTYRYMIQMAVADYSGQAWLSGFNDVGLIVFGMTANELHDIKERDDAIY 538
Query: 300 ---LKKALFTQYIFRLRAKLEHYNGTKKIPDGVN 330
L+KA Y F RAK + +N T +I G++
Sbjct: 539 TAILQKATCNTYNFACRAKQDTFNDTTRIRYGIS 572
>gi|225444784|ref|XP_002278273.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit [Vitis
vinifera]
gi|297738589|emb|CBI27834.3| unnamed protein product [Vitis vinifera]
Length = 622
Score = 263 bits (672), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 174/551 (31%), Positives = 268/551 (48%), Gaps = 110/551 (19%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AMLATQLND + G + + +++Q+ YI S V NR ++++L + I P EI
Sbjct: 52 AMLATQLNDRVKSGQVRKGSVIQLIDYICSVVQ-----NRKIIVVLNMETIIPECEI--- 103
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAI---------------PRQASAPV 439
IGNP+ +NT + +++ ++ P +NN+++ P P
Sbjct: 104 IGNPK-MNTESHSTAQKEFPGGNRARSVGVTNNNLSVQNGGNKMPSFRPSVQPPFQPPPN 162
Query: 440 VQTH-------------PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD 486
++H PI +L+PYQ +W IKARVT K +R +NNARG GK+FS DLLD
Sbjct: 163 YKSHGTILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLD 222
Query: 487 -ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVI 545
+ GEIR T FN +RF+D IE KVY IS +LKPA K F+ + N++E+ S++V
Sbjct: 223 SDGGEIRVTCFNAVVDRFYDTIEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLEASSSVE 282
Query: 546 PCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRD 605
C DE G++P ++ F P+ I + + +DV+G+ I + K +T +R
Sbjct: 283 LC-PDEDGSIPKQQFSFRPISEIENVENNSILDVIGIVISVNPSVPILRKNGMET-QRRI 340
Query: 606 ITLVDQSQASVTMTLWG--------KEAETFDASNKPVIAVKAARVSEFQG--------- 648
+ L D S S+ +T+WG + E D+ + PV+AVK+ +V++F G
Sbjct: 341 VNLKDGSGRSIELTMWGEFCNREGHQLQEMIDSGSFPVLAVKSGKVNDFSGKSVGTISAT 400
Query: 649 NLLL---------MRE---------------------------------IQDQQLGMGDK 666
L + +RE I+D+ LG DK
Sbjct: 401 QLFINPDFTEACNLREWFDRGGKNAASQSISRDIMPAGSRNEIRKTVSQIKDEGLGRSDK 460
Query: 667 ADYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRL 722
D+ +V+ I + Y ACP + CNKKV N ++C++CN+EF YR
Sbjct: 461 PDWVTVKATISFIKTDTFCYAACPLMIGDRQCNKKVTRSGNTRWQCDRCNQEFEDCDYRY 520
Query: 723 ILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV----GESTEDH---PALKKALFTQYIF 775
+L + D T WVT FQ E ILG +A+E+ E +D ++ L Q++F
Sbjct: 521 LLQAQVQDHTGLTWVTAFQEAGEEILGCSAKELYLLKYEEEDDFRFGEIIRSRLLNQFLF 580
Query: 776 RLRAKLEHYNK 786
RL+ K E Y +
Sbjct: 581 RLKIKEEMYGE 591
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/342 (30%), Positives = 174/342 (50%), Gaps = 26/342 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K F+ + N++E+ S++V C DE G++P ++ F P+ I + + +DV+G
Sbjct: 259 PAQKNFNHLKNEWEIFLEASSSVELC-PDEDGSIPKQQFSFRPISEIENVENNSILDVIG 317
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG--------KEAETFDASNK 116
+ I + K +T +R + L D S S+ +T+WG + E D+ +
Sbjct: 318 IVISVNPSVPILRKNGMET-QRRIVNLKDGSGRSIELTMWGEFCNREGHQLQEMIDSGSF 376
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTG 175
PV+AVK+ +V++F GK++ ++ L +NPD E L+ WF N + +S+
Sbjct: 377 PVLAVKSGKVNDF-SGKSVGTISATQLFINPDFTEACNLREWFDRGGKNAASQSISRDI- 434
Query: 176 GMGGGAAGNLL-LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCN 230
M G+ + + +I+D+ LG DK D+ +V+ I + Y ACP + CN
Sbjct: 435 -MPAGSRNEIRKTVSQIKDEGLGRSDKPDWVTVKATISFIKTDTFCYAACPLMIGDRQCN 493
Query: 231 KKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 290
KKV N ++C++CN+EF YR +L + D T WVT FQ E ILG +A+E+
Sbjct: 494 KKVTRSGNTRWQCDRCNQEFEDCDYRYLLQAQVQDHTGLTWVTAFQEAGEEILGCSAKEL 553
Query: 291 ----GESTEDH---PALKKALFTQYIFRLRAKLEHYNGTKKI 325
E +D ++ L Q++FRL+ K E Y +++
Sbjct: 554 YLLKYEEEDDFRFGEIIRSRLLNQFLFRLKIKEEMYGEEQRV 595
>gi|167519220|ref|XP_001743950.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777912|gb|EDQ91528.1| predicted protein [Monosiga brevicollis MX1]
Length = 540
Score = 263 bits (671), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 177/527 (33%), Positives = 274/527 (51%), Gaps = 80/527 (15%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DG ++ AMLATQLN++I + + +IV++K+ + + VS NR +LI+L++ +
Sbjct: 3 ISDGKYKHNSAMLATQLNNLIQNDYIRVNSIVRVKQGVCNLVS-----NRRILILLDVEV 57
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQ-----------TPAATNTNGSNGVHNNVA-IP 432
+ ++ IG + S+ T AA + + N A P
Sbjct: 58 V--ASDYDGVIGTVDSASGAAAGESSAATASTTASTEAPTNAAKHASPENPYRKASAKTP 115
Query: 433 RQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIR 492
A + P+ SL+PY +W I+ RV K PIR +N+ RG GK+FS+DL+D SGEIR
Sbjct: 116 LPAFGGDDRAIPLTSLNPYDRRWAIRVRVVAKPPIRTYNSDRGEGKIFSVDLVDASGEIR 175
Query: 493 ATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEV 552
AT FN +C+R + + EK+KVY I +KP N++F+ ++++YE++F +TTV +
Sbjct: 176 ATGFNADCDRLYPLFEKNKVYMIQGGRIKPKNRRFNQLSHEYEITFDSTTTVTESKDMGA 235
Query: 553 GNMPSVKYCFVPLKTIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVD 610
N S F L+ + I+ D D+L V + A+++++ + QK KR++TLVD
Sbjct: 236 YNFKS----FAELEAMP-ITRDTMAFADILAVIKEVADVTTIVTRAAQKELSKREVTLVD 290
Query: 611 QSQASVTMTLWGKEAETF-DASNKP--VIAVKAARVSEFQGNLLL------------MRE 655
+ S++ TLWGKEAE F DA P V+A+KAAR+S+F G L ++E
Sbjct: 291 KDNVSLSCTLWGKEAEGFVDAGGHPGVVMAIKAARISDFNGRSLSVASNSNYSINPDLKE 350
Query: 656 IQD------------QQLGMG--------------------DKADYCSVRGIIQVFRGSN 683
+ ++ MG DK+ V G I + N
Sbjct: 351 AHELKGWCVLIFGSRSRVCMGFDKWNARQFWHLTATVGLPDDKSVAFQVTGTILYVKSDN 410
Query: 684 TTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNE 743
Y+ACP+ CNKKV+++++G Y C+KC K + F YRL+ IGD++ S W+ F
Sbjct: 411 IYYQACPT--CNKKVVEESDGSYECQKCAKSYKEFKYRLLTSFSIGDFSGSQWLQSFSEV 468
Query: 744 AESILGVTAQEVGE-STEDHP----ALKKALFTQYIFRLRAKLEHYN 785
AES+LG +A E+G S P AL A F + FR RA+ + YN
Sbjct: 469 AESVLGHSADEIGSWSANSDPRFTTALADATFKTWTFRCRARTDTYN 515
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 185/332 (55%), Gaps = 27/332 (8%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI--DV 62
P N++F+ ++++YE++F +TTV + N S F L+ + I+ D D+
Sbjct: 205 PKNRRFNQLSHEYEITFDSTTTVTESKDMGAYNFKS----FAELEAMP-ITRDTMAFADI 259
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF-DASNKP--VI 119
L V + A+++++ + QK KR++TLVD+ S++ TLWGKEAE F DA P V+
Sbjct: 260 LAVIKEVADVTTIVTRAAQKELSKREVTLVDKDNVSLSCTLWGKEAEGFVDAGGHPGVVM 319
Query: 120 AVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGG 179
A+KAAR+S+F G++LS++ +S S+NPD+ E H+L+GW +R S+ G
Sbjct: 320 AIKAARISDFN-GRSLSVASNSNYSINPDLKEAHELKGWCVLIFGSR----SRVCMGFDK 374
Query: 180 GAAGNLLLMREIQDQQLGM-GDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNN 238
A + +G+ DK+ V G I + N Y+ACP+ CNKKV+++++
Sbjct: 375 WNARQFWHL----TATVGLPDDKSVAFQVTGTILYVKSDNIYYQACPT--CNKKVVEESD 428
Query: 239 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-STEDH 297
G Y C+KC K + F YRL+ IGD++ S W+ F AES+LG +A E+G S
Sbjct: 429 GSYECQKCAKSYKEFKYRLLTSFSIGDFSGSQWLQSFSEVAESVLGHSADEIGSWSANSD 488
Query: 298 P----ALKKALFTQYIFRLRAKLEHYNGTKKI 325
P AL A F + FR RA+ + YN ++
Sbjct: 489 PRFTTALADATFKTWTFRCRARTDTYNDQSRL 520
>gi|387916032|gb|AFK11625.1| replication protein A [Callorhinchus milii]
Length = 611
Score = 262 bits (669), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 144/326 (44%), Positives = 205/326 (62%), Gaps = 9/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+++S+ NDYEM+F + TTVIPC D+ N+P V++ F+P+ + + D ID++GV
Sbjct: 260 ANKQYTSVKNDYEMTFNNDTTVIPC--DDGDNLPKVQFEFIPIDQLDTKNKDTMIDIIGV 317
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C E+S +T +T + KR++ L+D S VT TLWG++AE FD S +PV+A+K AR
Sbjct: 318 CKSYEEVSKITVRTTNREVSKRNVQLLDMSGKIVTATLWGEDAEKFDGSGQPVLAIKGAR 377
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGMGGGAAGN 184
+S++ GG++LS++ SS L +NPDIPE KL+GWF T+ +S GG GG N
Sbjct: 378 LSDY-GGRSLSVTSSSTLMVNPDIPEAFKLRGWFDTEGQVVEGISISDLKGGSFGGGNSN 436
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ E + + LG G+KADY + G I + N Y+ACP+ DCNKKVIDQ NG+YRCE
Sbjct: 437 WKTLMEAKSENLGHGEKADYYTCVGTIVYLKKENCMYQACPTSDCNKKVIDQQNGLYRCE 496
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA----- 299
KC++EF F YRLIL V + D+ ++ WVT FQ E ILG +GE + +
Sbjct: 497 KCDREFPNFKYRLILSVNLADFGDNQWVTCFQETGEGILGQNCLYLGELKDSNEQAFEEI 556
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
++A F Y R+R KLE YN +I
Sbjct: 557 FQQANFRSYTCRIRVKLETYNDESRI 582
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 138/346 (39%), Positives = 210/346 (60%), Gaps = 28/346 (8%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG++ S MLATQL ++ +G ++ + QI +++ + + G R V+++L+L +
Sbjct: 44 LSDGIHTLSSFMLATQLTPMVDEGRIAIHDVCQINKFLCNTLKDG----RRVVVVLDLKV 99
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNN---------------- 428
+K ++ KIGNP P + N S ++T NG +N
Sbjct: 100 VKTAHQVNGKIGNPVPFSENQTQQSGLTATSSTVRPPQNGYASNDPPAQGGLAKTESRTL 159
Query: 429 ------VAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSI 482
+P + PI L+PYQ+KWTI+ARVTNK+ IR W+N+RG GKLFSI
Sbjct: 160 SKPSGVKTLPNTPGGTQAKVVPIACLNPYQSKWTIRARVTNKSQIRTWSNSRGEGKLFSI 219
Query: 483 DLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHST 542
+LLDESGEIRA F D+ ++F +IE +KVYY+S TLK ANK+++S+ NDYEM+F + T
Sbjct: 220 ELLDESGEIRAAAFTDQVDKFFPLIEVNKVYYVSKGTLKTANKQYTSVKNDYEMTFNNDT 279
Query: 543 TVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYM 602
TVIPC D+ N+P V++ F+P+ + + D ID++GVC E+S +T +T +
Sbjct: 280 TVIPC--DDGDNLPKVQFEFIPIDQLDTKNKDTMIDIIGVCKSYEEVSKITVRTTNREVS 337
Query: 603 KRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG 648
KR++ L+D S VT TLWG++AE FD S +PV+A+K AR+S++ G
Sbjct: 338 KRNVQLLDMSGKIVTATLWGEDAEKFDGSGQPVLAIKGARLSDYGG 383
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 84/138 (60%), Gaps = 5/138 (3%)
Query: 653 MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCN 712
+ E + + LG G+KADY + G I + N Y+ACP+ DCNKKVIDQ NG+YRCEKC+
Sbjct: 440 LMEAKSENLGHGEKADYYTCVGTIVYLKKENCMYQACPTSDCNKKVIDQQNGLYRCEKCD 499
Query: 713 KEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----LKK 767
+EF F YRLIL V + D+ ++ WVT FQ E ILG +GE + + ++
Sbjct: 500 REFPNFKYRLILSVNLADFGDNQWVTCFQETGEGILGQNCLYLGELKDSNEQAFEEIFQQ 559
Query: 768 ALFTQYIFRLRAKLEHYN 785
A F Y R+R KLE YN
Sbjct: 560 ANFRSYTCRIRVKLETYN 577
>gi|356556324|ref|XP_003546476.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Glycine max]
Length = 637
Score = 262 bits (669), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 182/555 (32%), Positives = 270/555 (48%), Gaps = 115/555 (20%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AMLATQLND + G + + ++VQ+ YI + + NR +++IL + I EI
Sbjct: 58 AMLATQLNDRVRTGRVQKGSVVQLLDYICTPLK-----NRKIIVILNMETIMDEFEI--- 109
Query: 395 IGNPQPL-----------NTNTDNSSTQQTPAATNTN----GSNGVHNNVAIPR------ 433
IGNP+P ++ + +S+ + P + N+N G N HNN R
Sbjct: 110 IGNPKPYMDSDIPTVRASDSASADSTVENLPRSYNSNNSSAGQNASHNNTQNFRPTIQPP 169
Query: 434 -------QASAPVVQTH------PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLF 480
+ PVV+ PI +L+PYQ +W IKARVT K +R +NNARG GK+F
Sbjct: 170 YQPPPLYKGRGPVVKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVF 229
Query: 481 SIDLLD-ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
S DLLD + GEIR T FN +RF+++IE KVY IS +LKPA K F+ + N++E+
Sbjct: 230 SFDLLDSDGGEIRVTCFNAVVDRFYNVIEVGKVYMISKGSLKPAQKNFNHLKNEWEILLE 289
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
S+ V C DE G++P ++ F P+ I + + +DV+GV + K +
Sbjct: 290 SSSMVELC-PDEDGSIPRQQFSFRPISDIENVDNNSILDVIGVVTSVNPSVPILRKNGME 348
Query: 600 TYMKRDITLVDQSQASVTMTLWG----KEAETF----DASNKPVIAVKAARVSEFQG--- 648
T +R ++L D S +SV +TLWG +E + DA P++AVK +V++F G
Sbjct: 349 T-QRRILSLKDSSGSSVELTLWGEFCNREGQQLQDMVDAGFFPILAVKTGKVNDFSGKSI 407
Query: 649 ------NLLL---------MRE---------------------------------IQDQQ 660
L + +RE I+D+
Sbjct: 408 GSISTTQLFINPDFPEAHSLREWFELVGKDSASLSISKDIIPGALKNEVRKTVSQIKDEG 467
Query: 661 LGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFN 716
LG DK D+ +VR I + Y ACP + CNKKV N ++C++CN+EF
Sbjct: 468 LGRSDKPDWITVRAAILFIKTDTFCYTACPLMIGDRQCNKKVTRLGNTRWQCDRCNQEFE 527
Query: 717 TFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV----GESTEDHP---ALKKAL 769
YR +L V I D T WVT FQ E I+ +A+++ E +D +K L
Sbjct: 528 ECDYRYLLQVQILDGTGLAWVTAFQEAGEEIMDYSAKDLYFLKHEEQDDEKFGEIIKSRL 587
Query: 770 FTQYIFRLRAKLEHY 784
F Q++FRL+ K E Y
Sbjct: 588 FNQFMFRLKIKEELY 602
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 112/348 (32%), Positives = 175/348 (50%), Gaps = 38/348 (10%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K F+ + N++E+ S+ V C DE G++P ++ F P+ I + + +DV+G
Sbjct: 272 PAQKNFNHLKNEWEILLESSSMVELC-PDEDGSIPRQQFSFRPISDIENVDNNSILDVIG 330
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEAETF----DASNK 116
V + K +T +R ++L D S +SV +TLWG +E + DA
Sbjct: 331 VVTSVNPSVPILRKNGMET-QRRILSLKDSSGSSVELTLWGEFCNREGQQLQDMVDAGFF 389
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGG 176
P++AVK +V++F G S+S + L +NPD PE H L+ WF E V + +
Sbjct: 390 PILAVKTGKVNDFSGKSIGSISTTQ-LFINPDFPEAHSLREWF--------ELVGKDSAS 440
Query: 177 MG------GGAAGNLL--LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP--- 225
+ GA N + + +I+D+ LG DK D+ +VR I + Y ACP
Sbjct: 441 LSISKDIIPGALKNEVRKTVSQIKDEGLGRSDKPDWITVRAAILFIKTDTFCYTACPLMI 500
Query: 226 -SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILG 284
+ CNKKV N ++C++CN+EF YR +L V I D T WVT FQ E I+
Sbjct: 501 GDRQCNKKVTRLGNTRWQCDRCNQEFEECDYRYLLQVQILDGTGLAWVTAFQEAGEEIMD 560
Query: 285 VTAQEV----GESTEDHP---ALKKALFTQYIFRLRAKLEHYNGTKKI 325
+A+++ E +D +K LF Q++FRL+ K E Y +K+
Sbjct: 561 YSAKDLYFLKHEEQDDEKFGEIIKSRLFNQFMFRLKIKEELYGDEQKV 608
>gi|168046036|ref|XP_001775481.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673151|gb|EDQ59678.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 626
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 177/567 (31%), Positives = 279/567 (49%), Gaps = 117/567 (20%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGV++ AMLATQLN+ + + + +IVQ+ YI + V NR ++I+L + I
Sbjct: 46 LSDGVHLQQ-AMLATQLNEKVKNNLAVKGSIVQLLEYICNTVQ-----NRKIIIVLNMEI 99
Query: 385 IKPGTEIGFKIGNPQPLNTNTDN-----------SSTQQTPAAT---NTNGSNGVH---- 426
++ +I IG+P+ L ++ SS Q P+ + NT +
Sbjct: 100 VESKADI---IGDPKHLVAGGEHQAGPGPGPGPGSSQLQQPSPSLPKNTTANGVGVGYGQ 156
Query: 427 -----NNVAIPRQA---------SAPVVQTH------PIVSLSPYQNKWTIKARVTNKTP 466
N P A P+V+ PI +L+PYQ +WTIKAR+T K
Sbjct: 157 QGQQQNAYGRPMAAYQPAPVYGNRGPIVKNEAPARIIPIAALNPYQGRWTIKARITAKGE 216
Query: 467 IREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANK 525
IR ++NA+G GK+FS D+LD + GEIRAT FN+ ++FH+ IE KVY IS +LK A K
Sbjct: 217 IRRFHNAKGEGKVFSFDMLDADGGEIRATCFNNVVDQFHERIEVGKVYLISKGSLKAAQK 276
Query: 526 KFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCID 585
F+ + ND+E+ TT+ PC E++ ++P Y F P+ + + + ID++GV +
Sbjct: 277 NFNHLKNDWEIFLESQTTIEPCYEED-SSIPQQHYDFKPISEVEALENNAMIDIVGVVMS 335
Query: 586 AAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEAETF----DASNKPVIA 637
+++ K +T KR + + D S SV +T+WG KE + D+ PV+A
Sbjct: 336 INPTTTIMRKNGLET-QKRSLQMKDMSNRSVELTMWGSFCSKEGQELQDLCDSGANPVLA 394
Query: 638 VKAARVSEFQGNLL-----------------------LMRE------------------- 655
VKA RVS+F G + RE
Sbjct: 395 VKAGRVSDFSGKSVGTISSTQLAINPDHPEARRVRDWFEREGKNTATVSLSREGGGGGRL 454
Query: 656 --------IQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNN 703
I+D+ LG GDK D+ +VR + + N Y ACP + C KKV + +
Sbjct: 455 EQRKTVAAIKDEGLGRGDKPDWITVRATVFYIKPENFCYPACPLEVNGKQCMKKVTNNGD 514
Query: 704 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP 763
G +RC++C++ YR +L + + D T W+T+FQ E ++ TA+E+ ++D P
Sbjct: 515 GTWRCDRCDRSVPECDYRYLLSIQVQDHTGPTWITVFQETGEELMQHTAKELFLWSQDEP 574
Query: 764 -----ALKKALFTQYIFRLRAKLEHYN 785
A++K FT+++F+L+ K E YN
Sbjct: 575 QRFSEAIQKLTFTKHVFKLKVKEETYN 601
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 182/337 (54%), Gaps = 23/337 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K F+ + ND+E+ TT+ PC E++ ++P Y F P+ + + + ID++GV
Sbjct: 274 AQKNFNHLKNDWEIFLESQTTIEPCYEED-SSIPQQHYDFKPISEVEALENNAMIDIVGV 332
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEAETF----DASNKP 117
+ +++ K +T KR + + D S SV +T+WG KE + D+ P
Sbjct: 333 VMSINPTTTIMRKNGLET-QKRSLQMKDMSNRSVELTMWGSFCSKEGQELQDLCDSGANP 391
Query: 118 VIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGG 176
V+AVKA RVS+F GK++ S+ L++NPD PE +++ WF + NT VS G
Sbjct: 392 VLAVKAGRVSDF-SGKSVGTISSTQLAINPDHPEARRVRDWFEREGKNT--ATVSLSREG 448
Query: 177 MGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNKK 232
GGG + I+D+ LG GDK D+ +VR + + N Y ACP + C KK
Sbjct: 449 GGGGRLEQRKTVAAIKDEGLGRGDKPDWITVRATVFYIKPENFCYPACPLEVNGKQCMKK 508
Query: 233 VIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE 292
V + +G +RC++C++ YR +L + + D T W+T+FQ E ++ TA+E+
Sbjct: 509 VTNNGDGTWRCDRCDRSVPECDYRYLLSIQVQDHTGPTWITVFQETGEELMQHTAKELFL 568
Query: 293 STEDHP-----ALKKALFTQYIFRLRAKLEHYNGTKK 324
++D P A++K FT+++F+L+ K E YN ++
Sbjct: 569 WSQDEPQRFSEAIQKLTFTKHVFKLKVKEETYNDEQR 605
>gi|326474770|gb|EGD98779.1| replication protein A DNA-binding subunit [Trichophyton tonsurans
CBS 112818]
Length = 598
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 174/532 (32%), Positives = 264/532 (49%), Gaps = 88/532 (16%)
Query: 330 NINSFA--MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKP 387
++N F ML TQLN +TDG L + V++ + VS V + +LII+ L ++
Sbjct: 48 DVNHFVRTMLPTQLNSYVTDGILRRGSFVRLTNFQVSVVKG-----KHLLIIMGLEVLSA 102
Query: 388 GTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNG--VHNNVAIPRQASAPVVQTHP- 444
E +IG+P+PL + + Q+ ++ N HN P Q + ++ P
Sbjct: 103 LGE-AERIGDPKPLEPKSGDEMGGQSTTLSSNEFYNAPQTHN----PPQQFQNIQRSRPS 157
Query: 445 ----------IVSLSPY-QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRA 493
I +LSP+ NKWTIKAR T+K+ I+ W N G GKLFS++LLD+SGEIRA
Sbjct: 158 GMTSNANIFSIEALSPFANNKWTIKARCTHKSNIKTWKNTFGEGKLFSVNLLDDSGEIRA 217
Query: 494 TMFNDECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEV 552
T F D+C+ + + E+ VYYIS+ CT+K A K+FS++NNDYE++F TV+ ED+
Sbjct: 218 TAFKDQCDLLYPIFEEGAVYYISSPCTVKMAKKEFSNVNNDYELTFDRD-TVVEKAEDQ- 275
Query: 553 GNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS 612
++P +++ F L + I IDVLG+ D S VT KT K Y KR++TLVD S
Sbjct: 276 NDVPQIRFNFTSLGNLQSIDKGTTIDVLGILKDVDATSQVTSKTTGKPYDKRELTLVDNS 335
Query: 613 QASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL--------------------- 651
SV +T+WG A FD + V+A K +VS+F G L
Sbjct: 336 GFSVRLTVWGNTATNFDTPPESVVAFKGVKVSDFGGRTLSLLSSGTVTVDPDIEEAHRLK 395
Query: 652 -------------------------------LMREIQDQQLGMGDKADYCSVRGIIQVFR 680
+ EI+D+++ D + S++ + +
Sbjct: 396 GWYDAQGKSNSFTAYSSDTTGGGGGSWPTFKTISEIRDEEIPSADSFESFSLKATV-IHV 454
Query: 681 GSNTTYKACPSQDC-NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTL 739
N Y ACP++ C NKKV + + CE+C + + YR IL + D T +W++
Sbjct: 455 KDNLCYPACPNEACKNKKVTRGDLDQWHCERCERSYANPKYRYILSLNACDHTGQIWLSC 514
Query: 740 FQNEAESILGVTAQEVGESTEDHPAL-----KKALFTQYIFRLRAKLEHYNK 786
F + I G+TA E+ + ED A K A + + F+ RAKL+ Y +
Sbjct: 515 FDEAGQMIFGMTADELMKIKEDDDAAANEITKGATYCTWNFKCRAKLDTYQE 566
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/350 (35%), Positives = 190/350 (54%), Gaps = 14/350 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++NNDYE++F T V+ ED+ ++P +++ F L + I IDVLG+
Sbjct: 248 AKKEFSNVNNDYELTFDRDT-VVEKAEDQ-NDVPQIRFNFTSLGNLQSIDKGTTIDVLGI 305
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D S VT KT K Y KR++TLVD S SV +T+WG A FD + V+A K +
Sbjct: 306 LKDVDATSQVTSKTTGKPYDKRELTLVDNSGFSVRLTVWGNTATNFDTPPESVVAFKGVK 365
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRTGGMGGGAAGN 184
VS+F GG+TLSL S ++++PDI E H+L+GW+ Q + F S T G GGG+
Sbjct: 366 VSDF-GGRTLSLLSSGTVTVDPDIEEAHRLKGWYDAQGKSNSFTAYSSDTTGGGGGSWPT 424
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDC-NKKVIDQNNGMYRC 243
+ EI+D+++ D + S++ + + N Y ACP++ C NKKV + + C
Sbjct: 425 FKTISEIRDEEIPSADSFESFSLKATV-IHVKDNLCYPACPNEACKNKKVTRGDLDQWHC 483
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPAL--- 300
E+C + + YR IL + D T +W++ F + I G+TA E+ + ED A
Sbjct: 484 ERCERSYANPKYRYILSLNACDHTGQIWLSCFDEAGQMIFGMTADELMKIKEDDDAAANE 543
Query: 301 --KKALFTQYIFRLRAKLEHYNGTKKIPDGVNINS---FAMLATQLNDII 345
K A + + F+ RAKL+ Y ++ V + +A A QL+ +I
Sbjct: 544 ITKGATYCTWNFKCRAKLDTYQEQQRTRYNVIAATPIDYATEADQLSKLI 593
>gi|406602762|emb|CCH45720.1| Replication protein A 70 kDa DNA-binding subunit [Wickerhamomyces
ciferrii]
Length = 608
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 159/507 (31%), Positives = 258/507 (50%), Gaps = 81/507 (15%)
Query: 354 TIVQIKRYIVSGVSSGSATNRSVLIILELNI-----IKPGTEI----GFKIGNP-----Q 399
+IV I+RY + + +G N+ V+II +L I K GT I + +P Q
Sbjct: 75 SIVTIQRYEIERMGAG---NKHVIIISDLVIKQSVASKVGTAIESLDDYFRAHPEEDIYQ 131
Query: 400 PLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHP-----IVSLSPYQNK 454
+N+ T Q A + + A Q P I LSPYQN
Sbjct: 132 SAEAGEENTPTPQAEAPKQEQPKQSIPQPQSSTNTNKASSNQKKPSNIYAIDQLSPYQNI 191
Query: 455 WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYY 514
WTIKARV+ K +R W+N RG GKLF+++LLDE+ EIRAT FND +F++++++ K YY
Sbjct: 192 WTIKARVSFKGEMRTWSNQRGEGKLFNVNLLDETDEIRATAFNDNAEKFYNLLQEGKAYY 251
Query: 515 ISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPD 574
+S ++P+ +FS++ + YE+ T + C + ++P + + FV L I ++ D
Sbjct: 252 VSKARIQPSRPQFSNLKHPYELQLDRDTVIEECF--DADDVPKLSFDFVKLNKIQDLEAD 309
Query: 575 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKP 634
IDV+GV + +T K + Y +RDIT+VD SQ ++++ LW K A FD
Sbjct: 310 SIIDVVGVIKEVNPHFQITSKAG-RAYDRRDITVVDDSQFAISVGLWNKTALEFDTPEGT 368
Query: 635 VIAVKAARVSEFQGNLL------------------------------------------- 651
VIA+K A+VS+F G L
Sbjct: 369 VIAIKGAKVSDFNGKTLSITPSGTITTNPDAPEAYAIKGWYDAQGRNENFQTLKTELGTR 428
Query: 652 --------LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNN 703
+ ++Q+ +LG+G+K DY +++ + + N +Y AC S+ CN+KVI+Q++
Sbjct: 429 KTSIEERKTIGDVQNLELGLGEKPDYFTIKSSVNFLKTDNFSYPACSSEGCNRKVIEQHD 488
Query: 704 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP 763
G +RCEKC+ YR IL + + D T +WVTLF+++A+++LG +A ++ + E+
Sbjct: 489 GTWRCEKCDINHAVPLYRYILTISVVDPTGQLWVTLFEDQAKALLGYSANDLVKYKEEDN 548
Query: 764 AL-----KKALFTQYIFRLRAKLEHYN 785
+L K ++ FR+RA+ ++YN
Sbjct: 549 SLFTSIVSKIQMNEFEFRIRARQDNYN 575
Score = 211 bits (538), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 113/335 (33%), Positives = 194/335 (57%), Gaps = 12/335 (3%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
P+ +FS++ + YE+ T + C + ++P + + FV L I ++ D IDV+G
Sbjct: 259 PSRPQFSNLKHPYELQLDRDTVIEECFD--ADDVPKLSFDFVKLNKIQDLEADSIIDVVG 316
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V + +T K + Y +RDIT+VD SQ ++++ LW K A FD VIA+K A
Sbjct: 317 VIKEVNPHFQITSKAG-RAYDRRDITVVDDSQFAISVGLWNKTALEFDTPEGTVIAIKGA 375
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAG 183
+VS+F GKTLS++ S ++ NPD PE + ++GW+ Q N F+ + G
Sbjct: 376 KVSDF-NGKTLSITPSGTITTNPDAPEAYAIKGWYDAQGRNENFQTLKTELGTRKTSIEE 434
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ ++Q+ +LG+G+K DY +++ + + N +Y AC S+ CN+KVI+Q++G +RC
Sbjct: 435 RKTIG-DVQNLELGLGEKPDYFTIKSSVNFLKTDNFSYPACSSEGCNRKVIEQHDGTWRC 493
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPAL--- 300
EKC+ YR IL + + D T +WVTLF+++A+++LG +A ++ + E+ +L
Sbjct: 494 EKCDINHAVPLYRYILTISVVDPTGQLWVTLFEDQAKALLGYSANDLVKYKEEDNSLFTS 553
Query: 301 --KKALFTQYIFRLRAKLEHYNGTKKIP-DGVNIN 332
K ++ FR+RA+ ++YNG +I + VN+N
Sbjct: 554 IVSKIQMNEFEFRIRARQDNYNGQVRIRYNAVNVN 588
>gi|409045840|gb|EKM55320.1| hypothetical protein PHACADRAFT_255854 [Phanerochaete carnosa
HHB-10118-sp]
Length = 540
Score = 259 bits (662), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 168/524 (32%), Positives = 263/524 (50%), Gaps = 90/524 (17%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLAT LN+++ +G L++ +IV + + V +LIIL L + E KI
Sbjct: 1 MLATPLNELVENGQLTKNSIVVADEFSCNYVGENKG---RLLIILRLTPLASPNE---KI 54
Query: 396 GNPQPLNTNTDNSSTQQTPAA--------------TNTNGSNGVHNNVAIPRQASAPVVQ 441
G+P + ++ + A + +HNN AS
Sbjct: 55 GSPTAIQGAVGSNGKPISSAGGTPTPASAPKAAPKAAPQPAPAMHNN------ASNQQRH 108
Query: 442 THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECN 501
T PI LSPYQN WTI+ +VT K+ IR+++NARG GKLFS L+D++GEI+AT FN+ +
Sbjct: 109 TFPIEGLSPYQNNWTIRVKVTQKSDIRQYSNARGDGKLFSAVLMDDTGEIKATAFNNNVD 168
Query: 502 RFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC 561
F+ +E+ K+YYIS + A KKF+++NN+YE+ T + C + V N + Y
Sbjct: 169 EFYPKLEEGKIYYISKGQVSLAKKKFNNVNNEYELGLQRGTIIEECRDGPVLN---IHYK 225
Query: 562 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
F+PL + +P + IDVLG+ + ++++ +T + KR++T+VD+S ASV +TLW
Sbjct: 226 FIPLDQLMNTNPGDTIDVLGIVKEMSDVTHLTSRQGND-LTKRELTIVDRSGASVRLTLW 284
Query: 622 GKEAETFDASNKPVIAVKAARVSEFQG------------------NLLLMR-------EI 656
GK+A+ + S +P+IA K+ +V +F G + ++R ++
Sbjct: 285 GKQADRYCESGEPIIAWKSVKVGDFGGRSLSMLSSSSMEINPDIPDAHVLRGWYDTDGKV 344
Query: 657 QDQQ-----------------------------LGMGDKADYCSVRGIIQVFRGSNTTYK 687
QD Q LG GDK D+ S I + N Y
Sbjct: 345 QDFQPQTSSAPRGSGGAFNRDEIRLLDDVRSANLGGGDKPDFFSAHATIMHIKSDNIAYP 404
Query: 688 ACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESI 747
AC +Q CNKKVI+Q++G +RCEKC+K F +YR I+ + + D + VW F I
Sbjct: 405 ACQNQGCNKKVIEQHDG-WRCEKCDKVFERPSYRYIMAMAVADHSGQVWFQCFNEAGVVI 463
Query: 748 LGVTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKLEHYNK 786
+TA ++ E + A L+ A+ T Y F RAK+E + +
Sbjct: 464 FDMTADQLVELKDRDDAQYNKVLESAVGTTYNFTCRAKMESFQE 507
Score = 209 bits (532), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 190/332 (57%), Gaps = 14/332 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A KKF+++NN+YE+ T + C + V N + Y F+PL + +P + IDVLG+
Sbjct: 190 AKKKFNNVNNEYELGLQRGTIIEECRDGPVLN---IHYKFIPLDQLMNTNPGDTIDVLGI 246
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ ++++ +T + KR++T+VD+S ASV +TLWGK+A+ + S +P+IA K+ +
Sbjct: 247 VKEMSDVTHLTSRQGNDL-TKRELTIVDRSGASVRLTLWGKQADRYCESGEPIIAWKSVK 305
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRTGGMGGGA--A 182
V +F GG++LS+ SS + +NPDIP+ H L+GW+ T + F+P + GGA
Sbjct: 306 VGDF-GGRSLSMLSSSSMEINPDIPDAHVLRGWYDTDGKVQDFQPQTSSAPRGSGGAFNR 364
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
+ L+ +++ LG GDK D+ S I + N Y AC +Q CNKKVI+Q++G +R
Sbjct: 365 DEIRLLDDVRSANLGGGDKPDFFSAHATIMHIKSDNIAYPACQNQGCNKKVIEQHDG-WR 423
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA--- 299
CEKC+K F +YR I+ + + D + VW F I +TA ++ E + A
Sbjct: 424 CEKCDKVFERPSYRYIMAMAVADHSGQVWFQCFNEAGVVIFDMTADQLVELKDRDDAQYN 483
Query: 300 --LKKALFTQYIFRLRAKLEHYNGTKKIPDGV 329
L+ A+ T Y F RAK+E + ++ GV
Sbjct: 484 KVLESAVGTTYNFTCRAKMESFQENNRVRYGV 515
>gi|449299904|gb|EMC95917.1| hypothetical protein BAUCODRAFT_71964 [Baudoinia compniacensis UAMH
10762]
Length = 613
Score = 258 bits (660), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 163/536 (30%), Positives = 256/536 (47%), Gaps = 106/536 (19%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSS---------------GSATNRSVLII 379
MLA Q+N + + L + +I ++ Y + V G +
Sbjct: 57 GMLAQQINHVAQENKLQKGSICRLTSYQANYVKDKHILIILDLDILDEYGQPEKLGTPVA 116
Query: 380 LELNIIKPGTEIGFKIGNPQPLNT-------NTDNSSTQQTPAATNTNGSN--GVHNNVA 430
LE P E+ + PQP N N + QQ A TNG++ G H N+
Sbjct: 117 LEA----PKPEVMDDV-KPQPGNISGNGMYGNHQPAQGQQRSVAVRTNGASNGGSHGNI- 170
Query: 431 IPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE 490
HPI +LSPY ++WTIKAR T+K I+ W+N G GKLFS++ LD+SGE
Sbjct: 171 ------------HPIEALSPYAHRWTIKARCTHKGEIKTWHNKNGEGKLFSVNFLDDSGE 218
Query: 491 IRATMFNDECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNE 549
IRAT FND +++++++++ VYY+S+ C + A K+FS++NNDYE++F T + E
Sbjct: 219 IRATGFNDAVDQWYEVLQEGSVYYVSSPCKVGLAKKQFSNLNNDYELTFERDTQIEKAEE 278
Query: 550 DEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLV 609
+ +P V+Y F L + + D ID +G+ + E+S + GKT+ K Y KR++TLV
Sbjct: 279 QD--GVPQVRYNFTSLADLQSVDKDSTIDCIGILKEVGEVSEIVGKTSSKPYSKRELTLV 336
Query: 610 DQSQASVTMTLWGKEAETFDASNKPVIAVK------------------------------ 639
D + +V +T+WGK AE FDA + V+A K
Sbjct: 337 DNTNYNVRLTVWGKTAENFDAQPESVVAFKGLKVSDFGGRSLSLLSSGSMNIDPDIDEAY 396
Query: 640 --------AARVSEFQGNLLLMR-----------------EIQDQQLGMGDKADYCSVRG 674
+ R EF + M +++D+ LGMG+ D+ SV+
Sbjct: 397 KLKGWYDASGRNEEFASHANTMSTAVATAGGDRNAYKTIAQVRDENLGMGEDTDWFSVKA 456
Query: 675 IIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNS 734
I + N Y AC S CNKKVI+ G +RCEKC+ +R I+ V + D T
Sbjct: 457 TIIYVKQDNFAYPACISDGCNKKVIEHEPGQWRCEKCDTSHPRADWRYIMSVNVSDHTGQ 516
Query: 735 VWVTLFQNEAESILGVTA------QEVGESTEDHPALKKALFTQYIFRLRAKLEHY 784
+W++ F + I+G+ QE E + A ++A ++F+ +AK++ +
Sbjct: 517 MWLSCFNEVGQLIMGMDGNELHALQEAMEEKKLAEAFQEANCKTFVFKCKAKMDTF 572
Score = 202 bits (514), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 120/367 (32%), Positives = 199/367 (54%), Gaps = 20/367 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++NNDYE++F T + E + +P V+Y F L + + D ID +G+
Sbjct: 252 AKKQFSNLNNDYELTFERDTQIEKAEEQD--GVPQVRYNFTSLADLQSVDKDSTIDCIGI 309
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ E+S + GKT+ K Y KR++TLVD + +V +T+WGK AE FDA + V+A K +
Sbjct: 310 LKEVGEVSEIVGKTSSKPYSKRELTLVDNTNYNVRLTVWGKTAENFDAQPESVVAFKGLK 369
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGM------GG 179
VS+F G++LSL S ++++PDI E +KL+GW+ + R E + M G
Sbjct: 370 VSDFG-GRSLSLLSSGSMNIDPDIDEAYKLKGWYD--ASGRNEEFASHANTMSTAVATAG 426
Query: 180 GAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNG 239
G + +++D+ LGMG+ D+ SV+ I + N Y AC S CNKKVI+ G
Sbjct: 427 GDRNAYKTIAQVRDENLGMGEDTDWFSVKATIIYVKQDNFAYPACISDGCNKKVIEHEPG 486
Query: 240 MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA------QEVGES 293
+RCEKC+ +R I+ V + D T +W++ F + I+G+ QE E
Sbjct: 487 QWRCEKCDTSHPRADWRYIMSVNVSDHTGQMWLSCFNEVGQLIMGMDGNELHALQEAMEE 546
Query: 294 TEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDGV---NINSFAMLATQLNDIITDGTL 350
+ A ++A ++F+ +AK++ + +++ V N +F + + +L D+I +
Sbjct: 547 KKLAEAFQEANCKTFVFKCKAKMDTFQDQQRVRYQVQYANPLNFQIESKKLADLIKVYSA 606
Query: 351 SEFTIVQ 357
+E VQ
Sbjct: 607 NETLFVQ 613
>gi|328770102|gb|EGF80144.1| hypothetical protein BATDEDRAFT_88559 [Batrachochytrium
dendrobatidis JAM81]
Length = 643
Score = 258 bits (660), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 169/565 (29%), Positives = 271/565 (47%), Gaps = 115/565 (20%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DGVN +M+A+QLN++++ G++++F I+++++YI + VSS + +LIIL L
Sbjct: 55 ISDGVNYIQ-SMIASQLNELVSSGSITKFGIIKLQKYICNTVSS-----KRILIILALEN 108
Query: 385 IKPGTEIGFKIGNPQPL--NTNTDNSSTQQTPAATNTNGSNGVHNNVAIP------RQAS 436
+ P + ++GNP L NT TD ++ PA + + + G + A+P +Q
Sbjct: 109 LTPFNDTIQRVGNPVSLDGNTVTDPNAATHAPAVGSAS-TFGQQHAPALPTSSFSRQQGQ 167
Query: 437 APVV--------------------------------------QTHPIVSLSPYQNKWTIK 458
P+ I +L+PYQNKWTIK
Sbjct: 168 QPMALPSNYNQQAGRSALSGSGSSNMPYGGGASTVNNGDTAGPYFAIKTLNPYQNKWTIK 227
Query: 459 ARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNC 518
+ NK +R WN A G+LF+ + D+SG+IR T FN+ + F++ I++ + Y IS
Sbjct: 228 GVIINKGSVRTWNKAGREGRLFNFTISDDSGDIRCTGFNEAVDMFYESIQEGQAYVISKA 287
Query: 519 TLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENID 578
+K +N F+ +DYEM+ T++ CN+ + ++P +KY + L + E+ D ID
Sbjct: 288 MIKVSNPAFNKGGHDYEMTIDPHTSITVCNDPK--SIPQIKYNALTLDRLLEVEKDAVID 345
Query: 579 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAV 638
+L V + +S +T K N K KRD+ +VD+S V +TLWG +AETF+ S+ PVI +
Sbjct: 346 ILAVVKECFPVSEITTKANNK-LKKRDLNIVDESGWLVRLTLWGSQAETFEHSDNPVIGI 404
Query: 639 KAARVSEFQGNLLL---------------------------------------------- 652
K ARV +F G L
Sbjct: 405 KNARVGDFGGRTLSVAMSSTLTLNPTMQDAFRLRGWFDAKASSIDFHTYSKSSSGVTSGN 464
Query: 653 -----MREIQDQQ---LGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNG 704
++ IQ Q LG G+K DY S+R I + N Y ACP++ C K + +
Sbjct: 465 STHSNLKTIQQIQDANLGNGEKPDYVSLRAFISFAKRENLWYPACPNEACRNKKVVEIGS 524
Query: 705 MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-----GEST 759
+RCEKC+ + YR I + D+T W+ F E +LG TA E+ +
Sbjct: 525 EWRCEKCDSNYPHPVYRYITSFSVSDYTGQTWLQAFNETVEKVLGKTANEMQKLVDTDKD 584
Query: 760 EDHPALKKALFTQYIFRLRAKLEHY 784
E +++A++ +Y+F +RAK E Y
Sbjct: 585 EFDRIIEQAIYQEYVFDVRAKAEMY 609
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 118/327 (36%), Positives = 186/327 (56%), Gaps = 12/327 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
+N F+ +DYEM+ T++ CN+ + ++P +KY + L + E+ D ID+L V
Sbjct: 292 SNPAFNKGGHDYEMTIDPHTSITVCNDPK--SIPQIKYNALTLDRLLEVEKDAVIDILAV 349
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ +S +T K N K KRD+ +VD+S V +TLWG +AETF+ S+ PVI +K AR
Sbjct: 350 VKECFPVSEITTKANNK-LKKRDLNIVDESGWLVRLTLWGSQAETFEHSDNPVIGIKNAR 408
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGM--GGGAA 182
V +F GG+TLS++MSS L+LNP + + +L+GWF + ++ F S+ + G+ G
Sbjct: 409 VGDF-GGRTLSVAMSSTLTLNPTMQDAFRLRGWFDAKASSIDFHTYSKSSSGVTSGNSTH 467
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
NL +++IQD LG G+K DY S+R I + N Y ACP++ C K + + +R
Sbjct: 468 SNLKTIQQIQDANLGNGEKPDYVSLRAFISFAKRENLWYPACPNEACRNKKVVEIGSEWR 527
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-----GESTEDH 297
CEKC+ + YR I + D+T W+ F E +LG TA E+ + E
Sbjct: 528 CEKCDSNYPHPVYRYITSFSVSDYTGQTWLQAFNETVEKVLGKTANEMQKLVDTDKDEFD 587
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKK 324
+++A++ +Y+F +RAK E Y KK
Sbjct: 588 RIIEQAIYQEYVFDVRAKAEMYQDAKK 614
>gi|378731776|gb|EHY58235.1| replication factor A1 [Exophiala dermatitidis NIH/UT8656]
Length = 608
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 160/523 (30%), Positives = 259/523 (49%), Gaps = 84/523 (16%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLA N ++ L +VQ+ G S+ + +LI+ ++ +++ E K+
Sbjct: 65 MLAVHQNSLVDQKILRRGVLVQL-----VGYSANRVKGKRILIVTDIKVLEDYGEHD-KL 118
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGVH-NNVAIPRQ-----------ASAPVVQTH 443
G+P+PL T+ A NT SNG + N P+Q +S+ +
Sbjct: 119 GDPKPLELKTEEEEK----PAPNTITSNGFYGNKQEQPKQNRSMPSHTKPSSSSAHANIY 174
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI ++SPY NKWTIKAR T+K+ I+ W+N G GKLFS++LLDESGEIRAT FND+C++
Sbjct: 175 PIEAISPYSNKWTIKARCTSKSEIKTWHNRNGEGKLFSVNLLDESGEIRATGFNDQCDQL 234
Query: 504 HDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
+D+ ++ +VYYIS+ C + A K+FS++ NDYE+ F T V E + +P V+Y F
Sbjct: 235 YDVFQEGQVYYISSPCRVTFAKKQFSNLANDYELHFERDTVVEKAEEQD--GVPQVRYNF 292
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
+ + + D ID++ + D E+ T KT K Y KR++TLVD + SV MT+WG
Sbjct: 293 TNIADLQSVEKDTTIDIIAILKDVGEVGQATSKTTGKPYEKRELTLVDNTGYSVRMTIWG 352
Query: 623 KEAETFDASNKPVIAVKAARVSEFQ----------------------------------G 648
K A + D V+ K +VS+F G
Sbjct: 353 KTAASLDVQPGSVVVFKGVKVSDFGGRSLSLLSSGSMTANPDMPEAHKLKGWWESHDRPG 412
Query: 649 NLLLMREIQ--------------------DQQLGMGDKADYCSVRGIIQVFRGSNTTYKA 688
N +Q ++QLGM +K D+ S++ + + Y A
Sbjct: 413 NFSTHENVQGAVSGVGSRSDPFKTISQVKEEQLGMSEKPDFFSIKATVHYIKQEPFAYPA 472
Query: 689 CPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL 748
C S+ CN+KV++ + G +RCEKC+ YR I+ + D T +WV F + +L
Sbjct: 473 CLSEGCNRKVVEIDPGQWRCEKCDTTHPKPEYRYIISANVSDHTGQLWVNCFDDTGRLLL 532
Query: 749 GVTAQEVGESTEDHPALKKALFTQ-----YIFRLRAKLEHYNK 786
G TA E+ ++ + +F++ + ++ +A+L+++ +
Sbjct: 533 GRTADELMAIKDEDQKQVEEIFSEANYKTWNWKCKARLDNFQE 575
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/350 (30%), Positives = 185/350 (52%), Gaps = 13/350 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ NDYE+ F T V E + +P V+Y F + + + D ID++ +
Sbjct: 255 AKKQFSNLANDYELHFERDTVVEKAEEQD--GVPQVRYNFTNIADLQSVEKDTTIDIIAI 312
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D E+ T KT K Y KR++TLVD + SV MT+WGK A + D V+ K +
Sbjct: 313 LKDVGEVGQATSKTTGKPYEKRELTLVDNTGYSVRMTIWGKTAASLDVQPGSVVVFKGVK 372
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTN----TRFEPVSQRTGGMGGGA 181
VS+F G ++LSL S ++ NPD+PE HKL+GW+ + + E V G+G
Sbjct: 373 VSDFGG-RSLSLLSSGSMTANPDMPEAHKLKGWWESHDRPGNFSTHENVQGAVSGVGS-R 430
Query: 182 AGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMY 241
+ + +++++QLGM +K D+ S++ + + Y AC S+ CN+KV++ + G +
Sbjct: 431 SDPFKTISQVKEEQLGMSEKPDFFSIKATVHYIKQEPFAYPACLSEGCNRKVVEIDPGQW 490
Query: 242 RCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALK 301
RCEKC+ YR I+ + D T +WV F + +LG TA E+ ++
Sbjct: 491 RCEKCDTTHPKPEYRYIISANVSDHTGQLWVNCFDDTGRLLLGRTADELMAIKDEDQKQV 550
Query: 302 KALFTQ-----YIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDIIT 346
+ +F++ + ++ +A+L+++ +++ V + T+ N +IT
Sbjct: 551 EEIFSEANYKTWNWKCKARLDNFQEQQRVRYQVTSAAPLDFVTESNKLIT 600
>gi|2828288|emb|CAA16702.1| replication A protein-like [Arabidopsis thaliana]
gi|7268708|emb|CAB78915.1| replication A protein-like [Arabidopsis thaliana]
Length = 717
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 170/536 (31%), Positives = 270/536 (50%), Gaps = 90/536 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG ++ ML T LN+++ +GTL +IV++ R++ + R ++I+ +L +
Sbjct: 52 LSDGTYLHQ-GMLGTDLNNLVKEGTLQPGSIVRLTRFVGDVIKG-----RRIVIVPQLEV 105
Query: 385 IKPGTEIGFKIGNPQPLNTNTD----------NSSTQQTPAATNTNGSNGVHNNVAIPRQ 434
+K ++I IG+P P + D N++ QQ N +N AI Q
Sbjct: 106 LKQISDI---IGHPVPGGKHNDQRGADSGIKFNTTEQQGSGIRQVNNIEPGRSNAAISPQ 162
Query: 435 ASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRA 493
AP + P+ +LSPY +WTIKARVTNK +++++N RG GK+F+ DLLD + GEIR
Sbjct: 163 VGAPP-KIIPVNALSPYSGRWTIKARVTNKAALKQYSNPRGEGKVFNFDLLDADGGEIRV 221
Query: 494 TMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVG 553
T FN ++F+D I +Y IS +L+PA K F+ + NDYE+ +++T+ C E++
Sbjct: 222 TCFNAVADQFYDQIVVGNLYLISRGSLRPAQKNFNHLRNDYEIMLDNASTIKQCYEEDAA 281
Query: 554 NMPSVKYCFVPLKTIAEISPDEN---IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVD 610
+P ++ F +TI +I EN +DV+G+ + ++T K T KR + L D
Sbjct: 282 -IPRHQFHF---RTIGDIESMENNCIVDVIGIVSSISPTVTITRKNGTAT-PKRSLQLKD 336
Query: 611 QSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL------------------- 651
S SV +T+WG D+ PV+AVKA R+SEF G +
Sbjct: 337 MSGRSVEVTMWGDFQSLCDSGVFPVLAVKAGRISEFNGKTVSTIGSSQLFIDPDFVEAEK 396
Query: 652 ----------------LMRE---------------IQDQQLGMGDKADYCSVRGIIQVFR 680
L RE I+D++LG +K D+ +V I +
Sbjct: 397 LKNWFEREGKSVPCISLSREFSGSGKVDVRKTISQIKDEKLGTSEKPDWITVSATILYLK 456
Query: 681 GSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW 736
N Y ACP + C+KKV D +G +RCEKC+K + YR IL + I D T+
Sbjct: 457 FDNFCYTACPIMNGDRPCSKKVTDNGDGTWRCEKCDKSVDECDYRYILQLQIQDHTDLTC 516
Query: 737 VTLFQNEAESILGVTAQEVGESTEDHP-------ALKKALFTQYIFRLRAKLEHYN 785
VT FQ E I+G++A+++ +H ++K FT+Y F+L+ K E ++
Sbjct: 517 VTAFQEAGEEIMGISAKDLYYVKNEHKDEEKFEDIIRKVAFTKYNFKLKVKEETFS 572
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/335 (33%), Positives = 178/335 (53%), Gaps = 21/335 (6%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN---ID 61
PA K F+ + NDYE+ +++T+ C E++ +P ++ F +TI +I EN +D
Sbjct: 250 PAQKNFNHLRNDYEIMLDNASTIKQCYEEDAA-IPRHQFHF---RTIGDIESMENNCIVD 305
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAV 121
V+G+ + ++T K T KR + L D S SV +T+WG D+ PV+AV
Sbjct: 306 VIGIVSSISPTVTITRKNGTAT-PKRSLQLKDMSGRSVEVTMWGDFQSLCDSGVFPVLAV 364
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGA 181
KA R+SEF G KT+S SS L ++PD E KL+ WF + + +S G G
Sbjct: 365 KAGRISEFNG-KTVSTIGSSQLFIDPDFVEAEKLKNWFEREGKS-VPCISLSREFSGSGK 422
Query: 182 AGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQN 237
+ +I+D++LG +K D+ +V I + N Y ACP + C+KKV D
Sbjct: 423 VDVRKTISQIKDEKLGTSEKPDWITVSATILYLKFDNFCYTACPIMNGDRPCSKKVTDNG 482
Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH 297
+G +RCEKC+K + YR IL + I D T+ VT FQ E I+G++A+++ +H
Sbjct: 483 DGTWRCEKCDKSVDECDYRYILQLQIQDHTDLTCVTAFQEAGEEIMGISAKDLYYVKNEH 542
Query: 298 P-------ALKKALFTQYIFRLRAKLEHYNGTKKI 325
++K FT+Y F+L+ K E ++ +++
Sbjct: 543 KDEEKFEDIIRKVAFTKYNFKLKVKEETFSDEQRV 577
>gi|50553160|ref|XP_503990.1| YALI0E15642p [Yarrowia lipolytica]
gi|49649859|emb|CAG79583.1| YALI0E15642p [Yarrowia lipolytica CLIB122]
Length = 589
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 144/416 (34%), Positives = 215/416 (51%), Gaps = 57/416 (13%)
Query: 427 NNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD 486
N + QA PI LSPYQNKW IK RVT+K ++++N +G G+LF++ +D
Sbjct: 144 NEIPAGVQAQGFPATVMPIERLSPYQNKWAIKVRVTSKADKKKFSNTKGEGQLFNVTFID 203
Query: 487 ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIP 546
E+GEIRAT FN E ++F+ M+E+ +VYY++ C + ANKKFS++NNDYE+ F T +I
Sbjct: 204 ETGEIRATGFNQEVDKFYPMLEEGQVYYVTQCRVSMANKKFSNVNNDYELVFGRDTVIIQ 263
Query: 547 CNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDI 606
+E E +P+ Y FV L + ++ N+DVLGV + L K Y +R++
Sbjct: 264 ADEAEAAAIPTANYSFVTLDKLQDVEVGNNVDVLGVVQNVGPLEDGVAKATGNPYKRRNL 323
Query: 607 TLVDQSQASVTMTLWGKEAETFDASNKPV---IAVKAARVSEFQGNLLLM---------- 653
L D+S + +T +G++A +FD PV IA+K ARV +F G L
Sbjct: 324 MLGDKSGFATRLTFFGEKATSFDEGTVPVGTIIAIKGARVGDFNGRNLSTSHSSTIAVEP 383
Query: 654 ----------------REIQDQQL---------------------GMGDKADYCSVRGII 676
++ +QL G +K DY +++ +
Sbjct: 384 AIDETYALKGWYASEGKQTSFKQLQTTTTNKPVAATPIDVATSSYGQSEKPDYYTLQAWV 443
Query: 677 QVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW 736
R N Y AC + DCNKKV++ + +RCEKC K + YR IL + +GD T S+W
Sbjct: 444 VHVRTGNFAYPACQTPDCNKKVVEHGD-EWRCEKCEKNMDKPLYRYILSINVGDATGSMW 502
Query: 737 VTLFQNEAESILGVTAQEVGE------STEDHPALKKALFTQYIFRLRAKLEHYNK 786
+T F AE I+G+TA ++ E E A++K QY R R+K E YN+
Sbjct: 503 LTAFNEPAEVIMGMTADQLTEIQTSQGDDEFEQAVQKVTGKQYTLRCRSKQEFYNE 558
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 115/329 (34%), Positives = 175/329 (53%), Gaps = 17/329 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANKKFS++NNDYE+ F T +I +E E +P+ Y FV L + ++ N+DVLGV
Sbjct: 240 ANKKFSNVNNDYELVFGRDTVIIQADEAEAAAIPTANYSFVTLDKLQDVEVGNNVDVLGV 299
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPV---IAVK 122
+ L K Y +R++ L D+S + +T +G++A +FD PV IA+K
Sbjct: 300 VQNVGPLEDGVAKATGNPYKRRNLMLGDKSGFATRLTFFGEKATSFDEGTVPVGTIIAIK 359
Query: 123 AARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGA 181
ARV +F G+ LS S SS +++ P I E + L+GW++++ T F+ + T A
Sbjct: 360 GARVGDFN-GRNLSTSHSSTIAVEPAIDETYALKGWYASEGKQTSFKQLQTTTTNKPVAA 418
Query: 182 AGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMY 241
++ G +K DY +++ + R N Y AC + DCNKKV++ + +
Sbjct: 419 TP-----IDVATSSYGQSEKPDYYTLQAWVVHVRTGNFAYPACQTPDCNKKVVEHGD-EW 472
Query: 242 RCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE------STE 295
RCEKC K + YR IL + +GD T S+W+T F AE I+G+TA ++ E E
Sbjct: 473 RCEKCEKNMDKPLYRYILSINVGDATGSMWLTAFNEPAEVIMGMTADQLTEIQTSQGDDE 532
Query: 296 DHPALKKALFTQYIFRLRAKLEHYNGTKK 324
A++K QY R R+K E YN K
Sbjct: 533 FEQAVQKVTGKQYTLRCRSKQEFYNEESK 561
>gi|327301885|ref|XP_003235635.1| replication factor A 1 [Trichophyton rubrum CBS 118892]
gi|326462987|gb|EGD88440.1| replication factor A 1 [Trichophyton rubrum CBS 118892]
Length = 598
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 173/532 (32%), Positives = 264/532 (49%), Gaps = 88/532 (16%)
Query: 330 NINSFA--MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKP 387
++N F ML TQLN +TDG L + V++ + VS V + +LII+ L ++
Sbjct: 48 DVNHFVRTMLPTQLNSYVTDGILRRGSFVRLTNFQVSVVKG-----KHLLIIMGLEVLSA 102
Query: 388 GTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGV--HNNVAIPRQASAPVVQTHP- 444
E +IG+P+PL + + Q+ ++ N HN P Q + ++ P
Sbjct: 103 LGE-AERIGDPKPLEPKSGDEMGGQSTTLSSNEFYNAPQPHN----PPQHFQNIQRSRPS 157
Query: 445 ----------IVSLSPY-QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRA 493
I +LSP+ NKWTIKAR T+K+ I+ W N G GKLFS++LLD+SGEIRA
Sbjct: 158 GMTSNANIFSIEALSPFANNKWTIKARCTHKSNIKTWKNTFGEGKLFSVNLLDDSGEIRA 217
Query: 494 TMFNDECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEV 552
T F D+C+ + + E+ VYYIS+ CT+K A K+FS++NNDYE++F TV+ ED+
Sbjct: 218 TAFKDQCDLLYPIFEEGAVYYISSPCTVKMAKKEFSNVNNDYELTFDRD-TVVEKAEDQ- 275
Query: 553 GNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS 612
++P +++ F L + I IDVLG+ D S VT KT K Y KR++TLVD S
Sbjct: 276 NDVPQIRFNFTSLGDLQSIDKGTTIDVLGILKDVDATSQVTSKTTGKPYDKRELTLVDNS 335
Query: 613 QASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL--------------------- 651
SV +T+WG A FD + V+A K +VS+F G L
Sbjct: 336 GFSVRLTVWGNTATNFDTPPESVVAFKGVKVSDFGGRTLSLLSSGTVTVDPDIEEAHRLK 395
Query: 652 -------------------------------LMREIQDQQLGMGDKADYCSVRGIIQVFR 680
+ EI+D+++ D + S++ + +
Sbjct: 396 GWYDAQGKSNSFTAYSSGATGGGGGSWPTFKTISEIRDEEIPSADSFESFSLKATV-IHV 454
Query: 681 GSNTTYKACPSQDC-NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTL 739
N Y ACP++ C NKKV + + CE+C + + YR IL + D T +W++
Sbjct: 455 KDNLCYPACPNEACKNKKVTRGDLDQWHCERCERSYANPKYRYILSLNACDHTGQIWLSC 514
Query: 740 FQNEAESILGVTAQEVGESTEDHPAL-----KKALFTQYIFRLRAKLEHYNK 786
F + I G+TA E+ + E+ A K A + + F+ RAKL+ Y +
Sbjct: 515 FDEAGQMIFGMTADELMKIKEEDDAAANEITKGATYCTWNFKCRAKLDTYQE 566
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 121/350 (34%), Positives = 189/350 (54%), Gaps = 14/350 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++NNDYE++F T V+ ED+ ++P +++ F L + I IDVLG+
Sbjct: 248 AKKEFSNVNNDYELTFDRDT-VVEKAEDQ-NDVPQIRFNFTSLGDLQSIDKGTTIDVLGI 305
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D S VT KT K Y KR++TLVD S SV +T+WG A FD + V+A K +
Sbjct: 306 LKDVDATSQVTSKTTGKPYDKRELTLVDNSGFSVRLTVWGNTATNFDTPPESVVAFKGVK 365
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRTGGMGGGAAGN 184
VS+F GG+TLSL S ++++PDI E H+L+GW+ Q + F S G GGG+
Sbjct: 366 VSDF-GGRTLSLLSSGTVTVDPDIEEAHRLKGWYDAQGKSNSFTAYSSGATGGGGGSWPT 424
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDC-NKKVIDQNNGMYRC 243
+ EI+D+++ D + S++ + + N Y ACP++ C NKKV + + C
Sbjct: 425 FKTISEIRDEEIPSADSFESFSLKATV-IHVKDNLCYPACPNEACKNKKVTRGDLDQWHC 483
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPAL--- 300
E+C + + YR IL + D T +W++ F + I G+TA E+ + E+ A
Sbjct: 484 ERCERSYANPKYRYILSLNACDHTGQIWLSCFDEAGQMIFGMTADELMKIKEEDDAAANE 543
Query: 301 --KKALFTQYIFRLRAKLEHYNGTKKIPDGVNINS---FAMLATQLNDII 345
K A + + F+ RAKL+ Y ++ V + +A A QL+ +I
Sbjct: 544 ITKGATYCTWNFKCRAKLDTYQEQQRTRYNVYAATPIDYATEADQLSKLI 593
>gi|321257561|ref|XP_003193631.1| damaged DNA binding protein [Cryptococcus gattii WM276]
gi|317460101|gb|ADV21844.1| Damaged DNA binding protein, putative [Cryptococcus gattii WM276]
Length = 598
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 170/534 (31%), Positives = 261/534 (48%), Gaps = 110/534 (20%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AMLATQLN + + + ++V++ + V+ VS R +LIIL L ++ P T+ K
Sbjct: 59 AMLATQLNHFVESKQVDKHSLVKVVNFSVNSVSG-----RKLLIILALEVV-PWTDE--K 110
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPR-QA---SAPVVQT-------- 442
IGNP ++ +S PA N+ + A R QA +AP ++
Sbjct: 111 IGNPVSVDQAKTGASASAQPAGANSAPHQSATSAPASARGQAPARNAPSARSGNTKPKGD 170
Query: 443 ----HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFND 498
+PI LSPYQN+WTIKARVT K+ IR ++N RG GKLF++ +DE+GEIRAT FND
Sbjct: 171 LGPLYPIEGLSPYQNRWTIKARVTQKSDIRHYSNQRGDGKLFNVTFMDETGEIRATGFND 230
Query: 499 ECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV 558
+ F++++E KV+++S + A K+FS++NN+YE+ F T + PC ++ V P V
Sbjct: 231 AVDNFYNLLEVGKVFFVSRARINIAKKQFSNVNNEYEIMFERDTEIEPCADESV---PQV 287
Query: 559 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM 618
KY F + + E+ D+ DV+GV + + KRD+ LVDQS SV +
Sbjct: 288 KYSFKGIGDLGELQKDDVCDVIGVV---------------REFAKRDLQLVDQSGQSVRL 332
Query: 619 TLWGKEAET-----------------------------------------------FDAS 631
TLWGK+AET FDA
Sbjct: 333 TLWGKQAETFQADDQPVIAFKGVKVGDFGGRSLSMFSNATMTINPDIPEAHSLRGWFDAE 392
Query: 632 --NKPVIAVKAARVSEFQGN-----------LLLMREIQDQQLGMGDKADYCSVRGIIQV 678
NK A A V + N L + + +D+QLGM +K D+ S +
Sbjct: 393 GHNKHFTAYTNASVGDSAVNTAAGAGTRPAELKTIAQAKDEQLGMSEKTDFFSTEATVAF 452
Query: 679 FRGSNTTYKACPSQD-CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWV 737
+ +Y AC + D C KKV++ +G + CEKC + ++ +R IL + + D+T W+
Sbjct: 453 IKKDPFSYPACANPDNCAKKVVEDGSGWW-CEKCQRRWDEPIHRYILSLNVMDYTGQFWM 511
Query: 738 TLFQNEAESILGVTAQEV------GESTEDHPALKKALFTQYIFRLRAKLEHYN 785
T F AE I+ ++A ++ G + KA Y+F++ AK + +N
Sbjct: 512 TAFNETAEQIMSISANDLMKLKNEGNDLDYDAHFAKATARTYVFQMMAKQDSFN 565
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 180/336 (53%), Gaps = 36/336 (10%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++NN+YE+ F T + PC ++ V P VKY F + + E+ D+ DV+GV
Sbjct: 255 AKKQFSNVNNEYEIMFERDTEIEPCADESV---PQVKYSFKGIGDLGELQKDDVCDVIGV 311
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ + KRD+ LVDQS SV +TLWGK+AETF A ++PVIA K +
Sbjct: 312 V---------------REFAKRDLQLVDQSGQSVRLTLWGKQAETFQADDQPVIAFKGVK 356
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ---------TNTRFEPVSQRTGG 176
V +F GG++LS+ ++ +++NPDIPE H L+GWF + TN + T
Sbjct: 357 VGDF-GGRSLSMFSNATMTINPDIPEAHSLRGWFDAEGHNKHFTAYTNASVGDSAVNTAA 415
Query: 177 MGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD-CNKKVID 235
G L + + +D+QLGM +K D+ S + + +Y AC + D C KKV++
Sbjct: 416 GAGTRPAELKTIAQAKDEQLGMSEKTDFFSTEATVAFIKKDPFSYPACANPDNCAKKVVE 475
Query: 236 QNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV----- 290
+G + CEKC + ++ +R IL + + D+T W+T F AE I+ ++A ++
Sbjct: 476 DGSGWW-CEKCQRRWDEPIHRYILSLNVMDYTGQFWMTAFNETAEQIMSISANDLMKLKN 534
Query: 291 -GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
G + KA Y+F++ AK + +N ++
Sbjct: 535 EGNDLDYDAHFAKATARTYVFQMMAKQDSFNDQVRV 570
>gi|313666982|gb|ADR72941.1| replication protein A1 [Brachionus ibericus]
Length = 611
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 119/334 (35%), Positives = 208/334 (62%), Gaps = 17/334 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK++ ++NDYEM+F + T + PC +E ++P + V +K I+ + ++ +DV+GV
Sbjct: 250 ANKQYCKLDNDYEMTFNNETVIQPC--EETDDLPRINLNLVKIKEISNHAANDFVDVIGV 307
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNK-PVIAVKAA 124
+++++ K+ + KR++++VD S+ ++T TLWGK+AE +D S+ PVI +K A
Sbjct: 308 VRSVGDVTTIITKSTNRELKKRELSIVDNSECAITATLWGKQAEDYDPSDSYPVILLKGA 367
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAG 183
++ ++ GKTLS++ ++V+ +NPD+PE H ++GWF + + + +S + G +G
Sbjct: 368 KIGDY-NGKTLSVASTTVVQINPDLPEAHTVKGWFEQGGSESDIQDLSSQGMAAAGANSG 426
Query: 184 -------NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 236
N + +++D++LGMGDKADY S + + + N+ Y ACP ++CNKK+ DQ
Sbjct: 427 GPISGHSNWKFLDQLKDEKLGMGDKADYFSTKAYVLYAKKDNSMYMACPGENCNKKIFDQ 486
Query: 237 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-STE 295
N+G YRCEKC + + F +R+IL + + D+ S W T FQ AE+ILG+ +E+GE
Sbjct: 487 NDGTYRCEKCARNYPNFKWRMILNINLADFAESNWATCFQETAETILGIGTEELGELKNS 546
Query: 296 DHPALKKAL----FTQYIFRLRAKLEHYNGTKKI 325
+ P + F ++ F+LRAK+E YN +++
Sbjct: 547 NDPKFDEIFSECAFKEFNFKLRAKMETYNDERRV 580
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 163/541 (30%), Positives = 272/541 (50%), Gaps = 94/541 (17%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
DG ++F +LATQ N ++ L ++++++ Y + +S + +I+L I+
Sbjct: 47 DGETQHTFGILATQKNSLVESNQLRIGSVIKLEEYAANVLSKDPP--KVAIILLNFEIL- 103
Query: 387 PGTEIGFKIGNPQPLNTNTDNSSTQQTPAA----------TNTNGSNGVHNNVAIPRQAS 436
G N +P TN + ++Q TNT N Q++
Sbjct: 104 -----GEMDPNSKPQATNAISQPSKQIQNENIEPNKPNNQTNTKSFFSKKENDFEKAQST 158
Query: 437 APV-----VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEI 491
P + I SL+PYQNKW IKARVTNK+ IR ++NARG GKLF+++L+D +GEI
Sbjct: 159 NPPGTFNGFKIFGISSLNPYQNKWAIKARVTNKSNIRTYSNARGEGKLFNVELIDSTGEI 218
Query: 492 RATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDE 551
RA FN++ ++F++M++ D+VYYIS LK ANK++ ++NDYEM+F + T + PC +E
Sbjct: 219 RANGFNEQVDKFYEMLQIDQVYYISKANLKTANKQYCKLDNDYEMTFNNETVIQPC--EE 276
Query: 552 VGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ 611
++P + V +K I+ + ++ +DV+GV +++++ K+ + KR++++VD
Sbjct: 277 TDDLPRINLNLVKIKEISNHAANDFVDVIGVVRSVGDVTTIITKSTNRELKKRELSIVDN 336
Query: 612 SQASVTMTLWGKEAETFDASNK-PVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYC 670
S+ ++T TLWGK+AE +D S+ PVI +K A++ ++ G L + Q+ D +
Sbjct: 337 SECAITATLWGKQAEDYDPSDSYPVILLKGAKIGDYNGKTLSVASTTVVQIN-PDLPEAH 395
Query: 671 SVRGIIQVFRGSNTTYKACPSQ---------------DCNKKVIDQ-------------- 701
+V+G + GS + + SQ N K +DQ
Sbjct: 396 TVKGWFEQ-GGSESDIQDLSSQGMAAAGANSGGPISGHSNWKFLDQLKDEKLGMGDKADY 454
Query: 702 ------------NNGMYRC---EKCNKE-----------------FNTFTYRLILPVMIG 729
+N MY E CNK+ + F +R+IL + +
Sbjct: 455 FSTKAYVLYAKKDNSMYMACPGENCNKKIFDQNDGTYRCEKCARNYPNFKWRMILNINLA 514
Query: 730 DWTNSVWVTLFQNEAESILGVTAQEVGE-STEDHPALKKAL----FTQYIFRLRAKLEHY 784
D+ S W T FQ AE+ILG+ +E+GE + P + F ++ F+LRAK+E Y
Sbjct: 515 DFAESNWATCFQETAETILGIGTEELGELKNSNDPKFDEIFSECAFKEFNFKLRAKMETY 574
Query: 785 N 785
N
Sbjct: 575 N 575
>gi|58266158|ref|XP_570235.1| damaged DNA binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57226468|gb|AAW42928.1| damaged DNA binding protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 597
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 168/537 (31%), Positives = 261/537 (48%), Gaps = 117/537 (21%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AMLATQLN + + + ++V++ + V+ VS R +LIIL L ++ P T+ K
Sbjct: 59 AMLATQLNHFVESKQVDKHSLVKVVNFSVNSVS-----GRKLLIILALEVV-PWTDE--K 110
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNT-------------------NGSNGVHNNVAIPRQA 435
IGNP ++ +S PA ++ N S+ N P+
Sbjct: 111 IGNPVSVDQAKSGASASAQPAGAHSAPLQSATAPAPARAQVPGRNASSARPGNTK-PKGD 169
Query: 436 SAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATM 495
P+ +PI LSPYQN+WTIKARVT K+ IR ++N RG GKLF++ +DE+GEIRAT
Sbjct: 170 LGPL---YPIEGLSPYQNRWTIKARVTQKSDIRHYSNQRGDGKLFNVTFMDETGEIRATG 226
Query: 496 FNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNM 555
FND + F++++E KV+++S + A K+FS++NN+YE+ F T + PC ++ V
Sbjct: 227 FNDAVDNFYNLLEVGKVFFVSRARINIAKKQFSNVNNEYEIMFERDTEIEPCADESV--- 283
Query: 556 PSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQAS 615
P VKY F + + E+ D+ DV+GV + + KR++ LVDQS S
Sbjct: 284 PQVKYNFKGIGDLGELQKDDVCDVIGVV---------------REFAKRELQLVDQSGQS 328
Query: 616 VTMTLWGKEAET-----------------------------------------------F 628
V +TLWGK+AET F
Sbjct: 329 VRLTLWGKQAETFQADDQPVIAFKGVKVGDFGGRSLSMFSNATMTINPDIPEAHSLRGWF 388
Query: 629 DAS--NKPVIAVKAARVSEFQGN-----------LLLMREIQDQQLGMGDKADYCSVRGI 675
DA NK A A V + N L + +++D+QLGM +K D+ S
Sbjct: 389 DAEGHNKHFTAYTTASVGDSAINTAAGAATRPAELKTIAQVKDEQLGMSEKTDFFSTEAT 448
Query: 676 IQVFRGSNTTYKACPSQD-CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNS 734
+ + +Y AC + D C KKV++ +G + CEKC + ++ +R IL + + D+T
Sbjct: 449 VAFIKKDPFSYPACANPDNCAKKVVEDGSGWW-CEKCQRRWDEPIHRYILSMNVMDYTGQ 507
Query: 735 VWVTLFQNEAESILGVTAQEV------GESTEDHPALKKALFTQYIFRLRAKLEHYN 785
W+T F AE I+G++A ++ G + KA Y+F++ AK + +N
Sbjct: 508 FWMTAFNETAEQIMGISANDLMKLKNEGNDLDYDVHFAKATARTYVFQMMAKQDSFN 564
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/336 (33%), Positives = 185/336 (55%), Gaps = 36/336 (10%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++NN+YE+ F T + PC ++ V P VKY F + + E+ D+ DV+GV
Sbjct: 254 AKKQFSNVNNEYEIMFERDTEIEPCADESV---PQVKYNFKGIGDLGELQKDDVCDVIGV 310
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ + KR++ LVDQS SV +TLWGK+AETF A ++PVIA K +
Sbjct: 311 V---------------REFAKRELQLVDQSGQSVRLTLWGKQAETFQADDQPVIAFKGVK 355
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGG-----MGG 179
V +F GG++LS+ ++ +++NPDIPE H L+GWF + N F + + G
Sbjct: 356 VGDF-GGRSLSMFSNATMTINPDIPEAHSLRGWFDAEGHNKHFTAYTTASVGDSAINTAA 414
Query: 180 GAA---GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD-CNKKVID 235
GAA L + +++D+QLGM +K D+ S + + +Y AC + D C KKV++
Sbjct: 415 GAATRPAELKTIAQVKDEQLGMSEKTDFFSTEATVAFIKKDPFSYPACANPDNCAKKVVE 474
Query: 236 QNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV----- 290
+G + CEKC + ++ +R IL + + D+T W+T F AE I+G++A ++
Sbjct: 475 DGSGWW-CEKCQRRWDEPIHRYILSMNVMDYTGQFWMTAFNETAEQIMGISANDLMKLKN 533
Query: 291 -GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
G + KA Y+F++ AK + +N ++
Sbjct: 534 EGNDLDYDVHFAKATARTYVFQMMAKQDSFNDQVRV 569
>gi|328857111|gb|EGG06229.1| hypothetical protein MELLADRAFT_74880 [Melampsora larici-populina
98AG31]
Length = 525
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 160/511 (31%), Positives = 260/511 (50%), Gaps = 83/511 (16%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
ML+TQLN +I +G L IV++ Y ++ V R V+++L + +I I
Sbjct: 1 MLSTQLNHLIDEGMLQRMCIVKLPSYTINMVGE-----RRVVVLLTVEVID--------I 47
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKW 455
P+P N +T + T P +N+N ++ A RQ V+ PI+ LSPY NKW
Sbjct: 48 AKPEPTNEDTKPTITPSKPMVSNSNAKPSIN---ASNRQGGPSVI---PIMGLSPYSNKW 101
Query: 456 TIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYI 515
IKARV K+ I+ W+NARG GKLFS+ DESG+I+AT FND ++ ++ + V+++
Sbjct: 102 RIKARVVQKSDIKHWHNARGEGKLFSVTFSDESGQIKATGFNDTVDQLYERLVVGDVFFV 161
Query: 516 SNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKY-CFVPLKTIAEISPD 574
S + A K+F+++ +DYE+ F + T V C + G++P ++ ++ L + E+ D
Sbjct: 162 SRAKVSLAKKQFNTLPHDYEIMFENQTEVDECV--DAGDIPLIQLNKYMQLGQLGEVEKD 219
Query: 575 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKP 634
D++ V DA EL + K Q+ KRDITLVDQS S+ MTLWGK+AE F+A +
Sbjct: 220 HVCDIVAVLKDAGELGQIVTKQTQREMSKRDITLVDQSAFSIRMTLWGKQAEDFNAPVES 279
Query: 635 VIAVKAARVSEFQGNLLLM------------------REIQDQQ--------------LG 662
++A + RV +FQG L M R D + +G
Sbjct: 280 ILAFQGVRVGDFQGRNLSMVSSSIMAINPEIPEAFDLRGWYDTEGATVAIQSHSGAGSVG 339
Query: 663 MGDKADYC--SVRGIIQV----------------------FRGSNTTYKACPSQDCNKKV 698
M ++A S++ I+QV + +Y ACP++ CNKK+
Sbjct: 340 MNNQAPITEDSLKTIVQVKQEELGQSEKGDYFNLRATVLFIKNETFSYPACPTERCNKKM 399
Query: 699 IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE- 757
+ + ++CEKC+K + +R ++ + D++ ++++ F + +LG TA E+ +
Sbjct: 400 VQDGDDEWKCEKCDKTYPAPDHRYLIQLTASDYSGVMYLSGFNEVGQILLGKTANELIQL 459
Query: 758 STEDHPALKKAL----FTQYIFRLRAKLEHY 784
ED K+A+ + + F RAK E Y
Sbjct: 460 QQEDEENFKRAILDATYRTWDFVCRAKREVY 490
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/333 (32%), Positives = 185/333 (55%), Gaps = 20/333 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKY-CFVPLKTIAEISPDENIDVLG 64
A K+F+++ +DYE+ F + T V C + G++P ++ ++ L + E+ D D++
Sbjct: 169 AKKQFNTLPHDYEIMFENQTEVDECVD--AGDIPLIQLNKYMQLGQLGEVEKDHVCDIVA 226
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V DA EL + K Q+ KRDITLVDQS S+ MTLWGK+AE F+A + ++A +
Sbjct: 227 VLKDAGELGQIVTKQTQREMSKRDITLVDQSAFSIRMTLWGKQAEDFNAPVESILAFQGV 286
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGN 184
RV +FQ G+ LS+ SS++++NP+IPE L+GW+ T+ T Q G G N
Sbjct: 287 RVGDFQ-GRNLSMVSSSIMAINPEIPEAFDLRGWYDTEGAT---VAIQSHSGAGSVGMNN 342
Query: 185 --------LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 236
L + +++ ++LG +K DY ++R + + +Y ACP++ CNKK++
Sbjct: 343 QAPITEDSLKTIVQVKQEELGQSEKGDYFNLRATVLFIKNETFSYPACPTERCNKKMVQD 402
Query: 237 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-STE 295
+ ++CEKC+K + +R ++ + D++ ++++ F + +LG TA E+ + E
Sbjct: 403 GDDEWKCEKCDKTYPAPDHRYLIQLTASDYSGVMYLSGFNEVGQILLGKTANELIQLQQE 462
Query: 296 DHPALKKAL----FTQYIFRLRAKLEHYNGTKK 324
D K+A+ + + F RAK E Y T +
Sbjct: 463 DEENFKRAILDATYRTWDFVCRAKREVYQDTPR 495
>gi|331228428|ref|XP_003326881.1| hypothetical protein PGTG_08418 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309305871|gb|EFP82462.1| hypothetical protein PGTG_08418 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 618
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 165/541 (30%), Positives = 255/541 (47%), Gaps = 105/541 (19%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AMLATQLN + + + + +I+++ Y V+ + S + +++ ++ +
Sbjct: 59 AMLATQLNHFVQENQIKKHSILRVPSYTVNVIGSRHVVVLLGVEVVQ-------SDYPER 111
Query: 395 IGNP----QPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTH------- 443
IGNP N N DNS+T+ PA +NVA P+ P +
Sbjct: 112 IGNPVNCDAEANANKDNSNTKPAPAVLAN------RSNVAPPKPDVKPDIDVKPKPSSYK 165
Query: 444 --------------------PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSID 483
PI +SP+ N W IKARV+ KT I+ W+N+RG GKLFS+
Sbjct: 166 PNIPASKPNKPGVRRTGNHIPIAGVSPFANNWKIKARVSQKTEIKRWSNSRGDGKLFSVT 225
Query: 484 LLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTT 543
LD+SG+IRAT FND + +D +++ +VY IS + A K +++ +DYE+ F ++T
Sbjct: 226 FLDDSGQIRATGFNDAVDNLYDSLQEGQVYLISRGKITIAKKPYNTTGHDYEIVFENTTE 285
Query: 544 VIPCNEDEVGNMPSVKY-CFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYM 602
V C + + P + L + ++ D IDV+ V D E+S + K QKT +
Sbjct: 286 VEECGDS--ADTPKIILNKLTKLSELNDVEKDAVIDVVAVLKDVGEISEIVSKATQKTIV 343
Query: 603 KRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM--------- 653
KRDITL+DQS S+ MTLWGK AETF+A + ++A + +V +F G L M
Sbjct: 344 KRDITLIDQSAYSIRMTLWGKTAETFEAPTESIVAFQGVKVGDFGGRNLSMISSSVMLVN 403
Query: 654 ---------------------------------RE-----------IQDQQLGMGDKADY 669
RE I+D QLGM ++ DY
Sbjct: 404 PDIPEAFDLKGWYDNEGVNAKIQSFANTGTGIGREITEDSLKTVAEIKDTQLGMNERGDY 463
Query: 670 CSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIG 729
+ R I + +Y ACP++ CNKK++ + +RCEKC+K F +R ++ + +
Sbjct: 464 FNFRATIMYIKSETISYPACPTERCNKKLLRDGDDEWRCEKCDKLFPAPDHRYLIQMTVQ 523
Query: 730 DWTNSVWVTLFQNEAESILGVTAQE-VGESTEDHPALKK----ALFTQYIFRLRAKLEHY 784
D T ++W++ F + IL + A E +G D +K A Y RAK E Y
Sbjct: 524 DHTGTLWLSGFNEVGQIILPMNANELIGIKETDEAQYQKIVTDATAKTYTMVCRAKEETY 583
Query: 785 N 785
N
Sbjct: 584 N 584
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/327 (34%), Positives = 179/327 (54%), Gaps = 11/327 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC-FVPLKTIAEISPDENIDVLG 64
A K +++ +DYE+ F ++T V C + + P + L + ++ D IDV+
Sbjct: 265 AKKPYNTTGHDYEIVFENTTEVEECGDS--ADTPKIILNKLTKLSELNDVEKDAVIDVVA 322
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V D E+S + K QKT +KRDITL+DQS S+ MTLWGK AETF+A + ++A +
Sbjct: 323 VLKDVGEISEIVSKATQKTIVKRDITLIDQSAYSIRMTLWGKTAETFEAPTESIVAFQGV 382
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGG-AA 182
+V +F GG+ LS+ SSV+ +NPDIPE L+GW+ + N + + + G+G
Sbjct: 383 KVGDF-GGRNLSMISSSVMLVNPDIPEAFDLKGWYDNEGVNAKIQSFANTGTGIGREITE 441
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
+L + EI+D QLGM ++ DY + R I + +Y ACP++ CNKK++ + +R
Sbjct: 442 DSLKTVAEIKDTQLGMNERGDYFNFRATIMYIKSETISYPACPTERCNKKLLRDGDDEWR 501
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE-VGESTEDHPALK 301
CEKC+K F +R ++ + + D T ++W++ F + IL + A E +G D +
Sbjct: 502 CEKCDKLFPAPDHRYLIQMTVQDHTGTLWLSGFNEVGQIILPMNANELIGIKETDEAQYQ 561
Query: 302 K----ALFTQYIFRLRAKLEHYNGTKK 324
K A Y RAK E YN +
Sbjct: 562 KIVTDATAKTYTMVCRAKEETYNDVNR 588
>gi|348683769|gb|EGZ23584.1| hypothetical protein PHYSODRAFT_556228 [Phytophthora sojae]
Length = 629
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 175/555 (31%), Positives = 270/555 (48%), Gaps = 122/555 (21%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
MLATQL ++ + +L ++Q+K Y+ + V R +LI+L + I P + +
Sbjct: 57 GMLATQLAPMMENESLKTNYVLQLKDYLGNEVQG-----RRILIVLSIGDIVPAFD---R 108
Query: 395 IGNPQPLNTNTD-------------------------NSSTQQTPAATN----------- 418
IGNPQ + + SS QQ A N
Sbjct: 109 IGNPQSIEGSKGAPIPAAPAASAPPAASLGARPAAPVQSSFQQPSAPVNQYNQPPAAPLS 168
Query: 419 ----TNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQN-KWTIKARVTNKTPIREWNNA 473
+ +N + RQ P V+ I SL+PY +WTIKARVTN+ PI+ W NA
Sbjct: 169 YAPPAKPAPSAYNRGPVVRQD--PNVRLSDIQSLNPYAGGRWTIKARVTNRAPIKNWTNA 226
Query: 474 RGSGKLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINN 532
RGSGKLFS+DLLD GEIRAT FND ++F++ + V+Y + +K AN++FSS++N
Sbjct: 227 RGSGKLFSVDLLDARGGEIRATFFNDGVDKFYETLRPGGVFYFAGGKVKMANRRFSSVDN 286
Query: 533 DYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSV 592
DYE++F + + P ED G + + Y F + I + + N+DV+G+ D +++ +
Sbjct: 287 DYEVTFDQHSDISPAPED--GQISQMNYTFKKIAEIESVPAEANVDVIGIVRDVGQVNEI 344
Query: 593 TGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN--KPVIAVKAARVSEFQ--- 647
T K ++ + KRDI+LVD S A + T+W + A+ D S+ V+A+K RVS++
Sbjct: 345 TSKAGKQLF-KRDISLVDDSNAEIKCTMWNERAKE-DCSSWLNQVVAIKGCRVSDYNGRS 402
Query: 648 ------------------GNLL----------------------------------LMRE 655
G+L+ ++ +
Sbjct: 403 IGTMMSSSFTVNPTIPEAGHLVNWFSNGGNAAQTKSLSSGGGGFGGGSLGTFAERAVIND 462
Query: 656 IQDQQLGMGDKADYCSVRGIIQVFR-GSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 714
I+ +QLG G K DY +V+G + + + Y+ACP C KKV+ Y CEKC
Sbjct: 463 IKGKQLGFGQKPDYITVKGTVNFIKHDTGVFYQACPK--CQKKVVADVAQNYTCEKCQTS 520
Query: 715 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL-GVTAQEVGESTEDHPAL-----KKA 768
++ R IL V++ D T S W T F ++ + ++ G TA E+GE + +P L K+A
Sbjct: 521 YSNCENRYILSVVMLDHTGSTWTTCFNDQGKVVMNGRTADEIGELRDTNPTLYESTFKEA 580
Query: 769 LFTQYIFRLRAKLEH 783
LF QY+ RLR K E+
Sbjct: 581 LFKQYVCRLRVKAEN 595
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 117/337 (34%), Positives = 183/337 (54%), Gaps = 20/337 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN++FSS++NDYE++F + + P ED G + + Y F + I + + N+DV+G+
Sbjct: 277 ANRRFSSVDNDYEVTFDQHSDISPAPED--GQISQMNYTFKKIAEIESVPAEANVDVIGI 334
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN--KPVIAVKA 123
D +++ +T K ++ + KRDI+LVD S A + T+W + A+ D S+ V+A+K
Sbjct: 335 VRDVGQVNEITSKAGKQLF-KRDISLVDDSNAEIKCTMWNERAKE-DCSSWLNQVVAIKG 392
Query: 124 ARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAG 183
RVS++ G +++ MSS ++NP IPE L WFS N GG GG +
Sbjct: 393 CRVSDYNG-RSIGTMMSSSFTVNPTIPEAGHLVNWFSNGGNAAQTKSLSSGGGGFGGGSL 451
Query: 184 NLLLMR----EIQDQQLGMGDKADYCSVRGIIQVFR-GSNTTYKACPSQDCNKKVIDQNN 238
R +I+ +QLG G K DY +V+G + + + Y+ACP C KKV+
Sbjct: 452 GTFAERAVINDIKGKQLGFGQKPDYITVKGTVNFIKHDTGVFYQACPK--CQKKVVADVA 509
Query: 239 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL-GVTAQEVGESTEDH 297
Y CEKC ++ R IL V++ D T S W T F ++ + ++ G TA E+GE + +
Sbjct: 510 QNYTCEKCQTSYSNCENRYILSVVMLDHTGSTWTTCFNDQGKVVMNGRTADEIGELRDTN 569
Query: 298 PAL-----KKALFTQYIFRLRAKLEHYNGTKKIPDGV 329
P L K+ALF QY+ RLR K E+ ++ GV
Sbjct: 570 PTLYESTFKEALFKQYVCRLRVKAENVQEELRVKAGV 606
>gi|406694919|gb|EKC98235.1| hypothetical protein A1Q2_07466 [Trichosporon asahii var. asahii
CBS 8904]
Length = 591
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 169/516 (32%), Positives = 257/516 (49%), Gaps = 83/516 (16%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
+MLATQLN ++ + L + T++++ ++++ V NR ++IIL L + G K
Sbjct: 61 SMLATQLNHLVENDELEKNTVIKLTSFVINTVQ-----NRKLIIILAL---ERQNWNGQK 112
Query: 395 IGNPQPLNTNTDNSSTQQTPAA---TNTNGSNGVHNNV---AIPRQASAPVVQTHPIVSL 448
+GNP ++ P A TN S G +N A PR S + PI L
Sbjct: 113 VGNPVNVDQRAAGGVASPAPEAAPVTNGAASRGGASNARPAAAPRGPSRDMGPIFPIEGL 172
Query: 449 SPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIE 508
SPYQNKWTIKARVT K+ I+ W+N RG GKLFS+ L+DE+GEIRAT FND+ + F+ ++E
Sbjct: 173 SPYQNKWTIKARVTQKSDIKHWSNQRGEGKLFSVTLMDETGEIRATGFNDQVDAFYQLLE 232
Query: 509 KDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI 568
+ KV++IS + A K+FS++NN+YE++F + T + P ++P +KY F L +
Sbjct: 233 EGKVFFISKARINIAKKQFSNVNNEYEITFENQTEIEP-------SVPEIKYNFTKLNDL 285
Query: 569 AEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF 628
+ D DV+GV + +L +T K QK + KRDI LVDQS SV +TLWGK AE F
Sbjct: 286 ESLQKDATTDVIGVVQEVHDLGQITSKATQKPFNKRDIQLVDQSGQSVRLTLWGKTAENF 345
Query: 629 DASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKAD-YCSVRGIIQVFRGSNTTYK 687
+ PV+A K +VS+F G L M + + D C++RG G T +K
Sbjct: 346 THYDHPVVAFKGVKVSDFGGRSLSM--FSSATMAINPNTDEACALRGWYDSV-GEKTNFK 402
Query: 688 A-------------------CPSQDCNKKVIDQNNGMYRC------------------EK 710
++D + D+ + C E
Sbjct: 403 QYTNSGAMNAVSRPDEIKTIGQAKDEQLGMTDKTDYFSVCATILYIKQETFSYPACPGEG 462
Query: 711 CNKEF-------------NTF---TYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 754
CNK+ T+ +R IL + + D T S W+T F E I+GV+A E
Sbjct: 463 CNKKLIDEGAEWRCEKCNRTYPGPVHRYILQMNVIDHTGSFWITGFNEVGEQIMGVSANE 522
Query: 755 VGESTEDHPALKKALFT-----QYIFRLRAKLEHYN 785
+ + ++ + FT ++ F++ AK + +N
Sbjct: 523 LFKLKQESDPEAEKYFTRAAGREWDFKIMAKQDFFN 558
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 118/327 (36%), Positives = 186/327 (56%), Gaps = 17/327 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++NN+YE++F + T + P ++P +KY F L + + D DV+GV
Sbjct: 247 AKKQFSNVNNEYEITFENQTEIEP-------SVPEIKYNFTKLNDLESLQKDATTDVIGV 299
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ +L +T K QK + KRDI LVDQS SV +TLWGK AE F + PV+A K +
Sbjct: 300 VQEVHDLGQITSKATQKPFNKRDIQLVDQSGQSVRLTLWGKTAENFTHYDHPVVAFKGVK 359
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGG-GAAG 183
VS+F GG++LS+ S+ +++NP+ E L+GW+ S T F+ + +G M
Sbjct: 360 VSDF-GGRSLSMFSSATMAINPNTDEACALRGWYDSVGEKTNFKQYTN-SGAMNAVSRPD 417
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ + + +D+QLGM DK DY SV I + +Y ACP + CNKK+ID+ +RC
Sbjct: 418 EIKTIGQAKDEQLGMTDKTDYFSVCATILYIKQETFSYPACPGEGCNKKLIDE-GAEWRC 476
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
EKCN+ + +R IL + + D T S W+T F E I+GV+A E+ + ++ +
Sbjct: 477 EKCNRTYPGPVHRYILQMNVIDHTGSFWITGFNEVGEQIMGVSANELFKLKQESDPEAEK 536
Query: 304 LFT-----QYIFRLRAKLEHYNGTKKI 325
FT ++ F++ AK + +N T ++
Sbjct: 537 YFTRAAGREWDFKIMAKQDFFNDTARV 563
>gi|301115057|ref|XP_002999298.1| replication protein A 70 kDa DNA-binding subunit, putative
[Phytophthora infestans T30-4]
gi|262111392|gb|EEY69444.1| replication protein A 70 kDa DNA-binding subunit, putative
[Phytophthora infestans T30-4]
Length = 629
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 174/557 (31%), Positives = 272/557 (48%), Gaps = 126/557 (22%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
MLATQL ++ + +L ++Q+K Y+ + V R ++I+L++ I P +
Sbjct: 57 GMLATQLAPMMENESLKTNYVLQLKDYLGNEVQG-----RRIIIVLKVGNIVPHFDC--- 108
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNTN------------------------GSNGVHNNVA 430
IG+PQ N D S PAA++ + +N A
Sbjct: 109 IGSPQ----NIDGSRGPSVPAASSASVPPAAALGARSAAPAQPSYQQPRAPTNQFQQPPA 164
Query: 431 IPRQAS------------APVVQTHP------IVSLSPYQN-KWTIKARVTNKTPIREWN 471
P + PVV+ P I SL+PY +WTIKARVT ++PI+ W
Sbjct: 165 APSSYTPPTKPAASTYNRGPVVRQDPNIRLSDIQSLNPYAGGRWTIKARVTTRSPIKNWT 224
Query: 472 NARGSGKLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSI 530
N+RGSGKLFS+DLLD + GEIRAT FND ++F++M+ ++Y + +K N++FSS+
Sbjct: 225 NSRGSGKLFSVDLLDAKKGEIRATFFNDGVDKFYEMLRPGGIFYFAGGKVKMTNRRFSSV 284
Query: 531 NNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELS 590
+NDYE++F + + P ED G + ++Y F + I + D N+D++G+ D ++
Sbjct: 285 DNDYEVTFDPHSDISPAPED--GQISQMQYAFKKIAEIENVPADSNVDIIGIVRDVTPVN 342
Query: 591 SVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN--KPVIAVKAARVSEFQ- 647
T K ++ + KRDI+LVD S + T+W ++A+ + SN V+A+K RVSEF
Sbjct: 343 EFTSKAGKQLF-KRDISLVDDSNVEIKCTMWNEQAQQ-ECSNWLNQVLAIKGCRVSEFNG 400
Query: 648 --------------------GNLL----------------------------------LM 653
G+L+ ++
Sbjct: 401 RSLSTAGSSSFTVNPTIPEAGHLVTWFSNGGNATQTKSLSSGGGGFGGGSLGSFSERAVI 460
Query: 654 REIQDQQLGMGDKADYCSVRGIIQVFR-GSNTTYKACPSQDCNKKVIDQNNGMYRCEKCN 712
+I+ +QLG G K DY +V+G + + + Y+ACP C KKV+ Y CEKC
Sbjct: 461 NDIKSKQLGFGQKPDYITVKGTVNFIKHDTGIYYQACPK--CQKKVVADVAQNYTCEKCQ 518
Query: 713 KEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL-GVTAQEVGESTEDHPAL-----K 766
+ R IL V++ D T S W T F ++ + ++ G TA E+GE + +PAL K
Sbjct: 519 TSYPNCENRYILSVIMLDHTGSTWTTCFNDQGKVVMGGRTADEIGELRDTNPALFESIFK 578
Query: 767 KALFTQYIFRLRAKLEH 783
+ALF QY+ RLR K E+
Sbjct: 579 EALFKQYVCRLRVKAEN 595
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 117/326 (35%), Positives = 181/326 (55%), Gaps = 22/326 (6%)
Query: 7 NKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVC 66
N++FSS++NDYE++F + + P ED G + ++Y F + I + D N+D++G+
Sbjct: 278 NRRFSSVDNDYEVTFDPHSDISPAPED--GQISQMQYAFKKIAEIENVPADSNVDIIGIV 335
Query: 67 IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN--KPVIAVKAA 124
D ++ T K ++ + KRDI+LVD S + T+W ++A+ + SN V+A+K
Sbjct: 336 RDVTPVNEFTSKAGKQLF-KRDISLVDDSNVEIKCTMWNEQAQQ-ECSNWLNQVLAIKGC 393
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFS-----TQTNTRFEPVSQRTGGMGG 179
RVSEF G ++LS + SS ++NP IPE L WFS TQT + GG
Sbjct: 394 RVSEFNG-RSLSTAGSSSFTVNPTIPEAGHLVTWFSNGGNATQTKSLSS-GGGGFGGGSL 451
Query: 180 GAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFR-GSNTTYKACPSQDCNKKVIDQNN 238
G+ ++ +I+ +QLG G K DY +V+G + + + Y+ACP C KKV+
Sbjct: 452 GSFSERAVINDIKSKQLGFGQKPDYITVKGTVNFIKHDTGIYYQACPK--CQKKVVADVA 509
Query: 239 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL-GVTAQEVGESTEDH 297
Y CEKC + R IL V++ D T S W T F ++ + ++ G TA E+GE + +
Sbjct: 510 QNYTCEKCQTSYPNCENRYILSVIMLDHTGSTWTTCFNDQGKVVMGGRTADEIGELRDTN 569
Query: 298 PAL-----KKALFTQYIFRLRAKLEH 318
PAL K+ALF QY+ RLR K E+
Sbjct: 570 PALFESIFKEALFKQYVCRLRVKAEN 595
>gi|449446612|ref|XP_004141065.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Cucumis sativus]
Length = 694
Score = 251 bits (642), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 175/552 (31%), Positives = 264/552 (47%), Gaps = 116/552 (21%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AMLATQLND++ G + + +++Q+ Y+ S + NR ++++L L I EI
Sbjct: 52 AMLATQLNDVVKTGRVKKGSVIQLIDYVCSPIK-----NRKIIVVLCLETIILDCEI--- 103
Query: 395 IGNPQPLNTNTDNSSTQQTPAAT----------NTNGSNGVHN----------------- 427
IGNP+ + ++N + + TP+ + + N VHN
Sbjct: 104 IGNPKS-SAQSENFAQKATPSVNLEQPAKVGNGHLSARNPVHNVQSFQATVQPPYQPPPN 162
Query: 428 ----NVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSID 483
I +A A ++ PI +L+PYQ +W IKARVT K +R +NNA+G GK+FS D
Sbjct: 163 YKNHGAIIKNEAPARII---PIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFD 219
Query: 484 LLD-ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHST 542
LLD + GEIR T FN +RF+++IE KVY IS +LKPA K F+ + N++E+ S+
Sbjct: 220 LLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASS 279
Query: 543 TVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYM 602
TV C DE +P ++ F P+ I + +DV+G+ V K +T
Sbjct: 280 TVELC-PDEDDTIPRQQFSFKPISEIENAETNSILDVIGIVTSINPSIPVLRKNGMET-Q 337
Query: 603 KRDITLVDQSQASVTMTLWG--------KEAETFDASNKPVIAVKAARVSEFQGNLL--- 651
+R + L D S SV +T+WG K E + PV+AVK+ +VS+F G +
Sbjct: 338 RRVVYLKDASGRSVELTMWGDFCNKEGQKLQEIIYSGLSPVLAVKSGKVSDFTGKSIGTI 397
Query: 652 ---------------LMRE---------------------------------IQDQQLGM 663
++RE I+D+ LG
Sbjct: 398 SSTQLFINPDLPEAHILREWYDGGGKNTTSLSISKEIVPGSAKNDIRKTVSQIKDEGLGR 457
Query: 664 GDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFT 719
DK D+ +V+ I + + Y ACP + CNKKV N + C++CN+EF
Sbjct: 458 ADKPDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVTRSGNSKWVCDRCNQEFEDCD 517
Query: 720 YRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV----GESTED---HPALKKALFTQ 772
YR +L I D T WVT FQ E ILGV+A+E+ E +D ++ +F Q
Sbjct: 518 YRYLLQAQIQDHTGLTWVTAFQETGEEILGVSAKELYMLKYEEQDDVKFGEIIRSKIFDQ 577
Query: 773 YIFRLRAKLEHY 784
++FRL+ K E Y
Sbjct: 578 FLFRLKIKEEVY 589
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/346 (32%), Positives = 176/346 (50%), Gaps = 26/346 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K F+ + N++E+ S+TV C DE +P ++ F P+ I + +DV+G
Sbjct: 259 PARKDFNHLKNEWEVFLEASSTVELC-PDEDDTIPRQQFSFKPISEIENAETNSILDVIG 317
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG--------KEAETFDASNK 116
+ V K +T +R + L D S SV +T+WG K E +
Sbjct: 318 IVTSINPSIPVLRKNGMET-QRRVVYLKDASGRSVELTMWGDFCNKEGQKLQEIIYSGLS 376
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTG 175
PV+AVK+ +VS+F G K++ S+ L +NPD+PE H L+ W+ NT +S+
Sbjct: 377 PVLAVKSGKVSDFTG-KSIGTISSTQLFINPDLPEAHILREWYDGGGKNTTSLSISKEI- 434
Query: 176 GMGGGAAGNLL-LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCN 230
+ G A ++ + +I+D+ LG DK D+ +V+ I + + Y ACP + CN
Sbjct: 435 -VPGSAKNDIRKTVSQIKDEGLGRADKPDWITVKATISFIKTDSFCYTACPLMIGDRQCN 493
Query: 231 KKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 290
KKV N + C++CN+EF YR +L I D T WVT FQ E ILGV+A+E+
Sbjct: 494 KKVTRSGNSKWVCDRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQETGEEILGVSAKEL 553
Query: 291 ----GESTED---HPALKKALFTQYIFRLRAKLEHYNGTKKIPDGV 329
E +D ++ +F Q++FRL+ K E Y +++ + V
Sbjct: 554 YMLKYEEQDDVKFGEIIRSKIFDQFLFRLKIKEEVYGDEQRVKNTV 599
>gi|33621259|gb|AAQ23194.1| RPA 70kDa subunit [Pisum sativum]
Length = 637
Score = 251 bits (642), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 184/560 (32%), Positives = 261/560 (46%), Gaps = 119/560 (21%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AMLA QLND++T G + +IVQ+ YI + NR ++++L + I P EI
Sbjct: 56 AMLAAQLNDLVTTGRVKNGSIVQLLDYICTLFQ-----NRKIIMVLNMESIIPDCEI--- 107
Query: 395 IGNPQP-----------LNTNT-----------DNSSTQQTPAATNTNGSNGVHN--NVA 430
IG+P+P L NT +S AA NT GS V N
Sbjct: 108 IGSPKPFVDSELPVQKALRDNTVGSSINSNNNNSYNSNSNILAAQNT-GSTHVQNFRPTI 166
Query: 431 IPRQASAPV-------------VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSG 477
P PV +T PI +L+PYQ +W I+ARVT K +R +NNARG G
Sbjct: 167 QPSYKPPPVYKGRGAVMKNEAPARTIPIAALNPYQGRWAIRARVTAKGDLRRYNNARGDG 226
Query: 478 KLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEM 536
K+FS DLLD + GEIR T FN +RF+D IE KVY IS LKPA K F+ + N++E+
Sbjct: 227 KVFSFDLLDSDGGEIRVTCFNAIVDRFYDSIEVGKVYLISKGNLKPAQKNFNHLKNEWEI 286
Query: 537 SFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKT 596
++TV C DE G+ P ++ F P+ I + + +DV+GV + K
Sbjct: 287 MLDLNSTVELC-PDEDGSYPKQQFSFRPISDIENVESNAILDVIGVVTSVNPSVPILRKN 345
Query: 597 NQKTYMKRDITLVDQSQASVTMTLWG--------KEAETFDASNKPVIAVKAARVSEFQG 648
+T ++R + L D S SV +TLWG K E DA P++AVKA +V+EF G
Sbjct: 346 GMET-LRRILNLKDNSGRSVELTLWGEFCNREGQKLQEMVDAGVFPILAVKAGKVNEFSG 404
Query: 649 -----------------------------------NLLLMREI----------------Q 657
+L + ++I +
Sbjct: 405 KSIGSISTTQLFINPDFPEAQSLRAWFDQVGKDSASLSISKDITHGGPKNEIRKTVSQIR 464
Query: 658 DQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNK 713
D+ LG DK D+ ++R I + Y ACP + CNKKV + ++C++CN+
Sbjct: 465 DEGLGRSDKPDWITIRATISFMKTDTFCYTACPLMIGDRQCNKKVTRSGDTRWQCDRCNQ 524
Query: 714 EFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV----GESTEDH---PALK 766
EF YR +L I D T WVT FQ E I+G A+E+ E +D +K
Sbjct: 525 EFEECDYRYLLQAQIQDHTGLTWVTAFQEGGEEIMGYPAKELYALKYEQEDDERFGDIVK 584
Query: 767 KALFTQYIFRLRAKLEHYNK 786
LF ++FRL+ K E Y +
Sbjct: 585 SRLFNHFVFRLKIKEELYGE 604
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 112/345 (32%), Positives = 169/345 (48%), Gaps = 24/345 (6%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K F+ + N++E+ ++TV C DE G+ P ++ F P+ I + + +DV+G
Sbjct: 272 PAQKNFNHLKNEWEIMLDLNSTVELC-PDEDGSYPKQQFSFRPISDIENVESNAILDVIG 330
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG--------KEAETFDASNK 116
V + K +T ++R + L D S SV +TLWG K E DA
Sbjct: 331 VVTSVNPSVPILRKNGMET-LRRILNLKDNSGRSVELTLWGEFCNREGQKLQEMVDAGVF 389
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGG 176
P++AVKA +V+EF G S+S + L +NPD PE L+ WF Q +S
Sbjct: 390 PILAVKAGKVNEFSGKSIGSISTTQ-LFINPDFPEAQSLRAWFD-QVGKDSASLSISKDI 447
Query: 177 MGGGAAGNLL-LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNK 231
GG + + +I+D+ LG DK D+ ++R I + Y ACP + CNK
Sbjct: 448 THGGPKNEIRKTVSQIRDEGLGRSDKPDWITIRATISFMKTDTFCYTACPLMIGDRQCNK 507
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV- 290
KV + ++C++CN+EF YR +L I D T WVT FQ E I+G A+E+
Sbjct: 508 KVTRSGDTRWQCDRCNQEFEECDYRYLLQAQIQDHTGLTWVTAFQEGGEEIMGYPAKELY 567
Query: 291 ---GESTEDH---PALKKALFTQYIFRLRAKLEHYNGTKKIPDGV 329
E +D +K LF ++FRL+ K E Y +K+ V
Sbjct: 568 ALKYEQEDDERFGDIVKSRLFNHFVFRLKIKEELYGEEQKVKSTV 612
>gi|403214488|emb|CCK68989.1| hypothetical protein KNAG_0B05560 [Kazachstania naganishii CBS
8797]
Length = 633
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 153/439 (34%), Positives = 223/439 (50%), Gaps = 74/439 (16%)
Query: 415 AATNTNGSNGVHNN-VAIPRQASAPVVQTHPIVS---LSPYQNKWTIKARVTNKTPIREW 470
AA+ TN G + + P + ++ PI + LSPYQN WTIKARV+ K I+ W
Sbjct: 167 AASATNSMTGQSDRPLGNPATSFGNSSKSKPIFAIEQLSPYQNVWTIKARVSFKGEIKTW 226
Query: 471 NNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSI 530
+N RG GKLF+++ LD SGEIRAT FND ++++++++ KVYY+S L+PA +FS++
Sbjct: 227 SNQRGEGKLFNVNFLDTSGEIRATAFNDMATKYYEILQEGKVYYVSKARLQPAKPQFSNL 286
Query: 531 NNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCI---DAA 587
++ YE+S + V C +D N+P + F+ L T+ + +DVLG+ DA
Sbjct: 287 SHPYELSLDRESVVEECQDDI--NVPKTHFNFIKLDTVQNQEANSTVDVLGIIKTVNDAF 344
Query: 588 ELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQ 647
L+S GKT + +RDI LVD S +S+ + LW A+ F+ V+A+K RVS+F
Sbjct: 345 TLTSRAGKT----FDRRDIVLVDDSNSSINVGLWNTLAKEFNMPEGSVVAIKGVRVSDFG 400
Query: 648 G---------NLLLMREI-----------------------QD----------------- 658
G NL+ EI QD
Sbjct: 401 GKSLTMGFTSNLIPNPEIPEAYALKGWYDSEGHSANFTALGQDNVPGASPNAGKFIAQRI 460
Query: 659 -------QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKC 711
LG D DY S+R I + N Y AC ++DCNKK I +G +RCEKC
Sbjct: 461 SIGKAIADNLGKSDAGDYFSIRAAISFLKVDNFAYPACSNKDCNKKAIQSTDGTWRCEKC 520
Query: 712 NKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKAL-- 769
N + +R IL + I D T +WV LF +AE +LGV+A ++ + E P L
Sbjct: 521 NTDNEKPEWRYILTLSIMDETGQLWVVLFNEQAEQLLGVSATKLTDLKEKDPKEFSRLTQ 580
Query: 770 ---FTQYIFRLRAKLEHYN 785
QY FR+RA+ ++YN
Sbjct: 581 NLQMNQYDFRIRAREDNYN 599
Score = 204 bits (520), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 119/335 (35%), Positives = 180/335 (53%), Gaps = 22/335 (6%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA +FS++++ YE+S + V C +D N+P + F+ L T+ + +DVLG
Sbjct: 278 PAKPQFSNLSHPYELSLDRESVVEECQDDI--NVPKTHFNFIKLDTVQNQEANSTVDVLG 335
Query: 65 VCI---DAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAV 121
+ DA L+S GKT + +RDI LVD S +S+ + LW A+ F+ V+A+
Sbjct: 336 IIKTVNDAFTLTSRAGKT----FDRRDIVLVDDSNSSINVGLWNTLAKEFNMPEGSVVAI 391
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGMGGG 180
K RVS+F GGK+L++ +S L NP+IPE + L+GW+ ++ ++ F + Q
Sbjct: 392 KGVRVSDF-GGKSLTMGFTSNLIPNPEIPEAYALKGWYDSEGHSANFTALGQDNVPGASP 450
Query: 181 AAGNLLLMR-----EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVID 235
AG + R I D LG D DY S+R I + N Y AC ++DCNKK I
Sbjct: 451 NAGKFIAQRISIGKAIADN-LGKSDAGDYFSIRAAISFLKVDNFAYPACSNKDCNKKAIQ 509
Query: 236 QNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE 295
+G +RCEKCN + +R IL + I D T +WV LF +AE +LGV+A ++ + E
Sbjct: 510 STDGTWRCEKCNTDNEKPEWRYILTLSIMDETGQLWVVLFNEQAEQLLGVSATKLTDLKE 569
Query: 296 DHPALKKAL-----FTQYIFRLRAKLEHYNGTKKI 325
P L QY FR+RA+ ++YN +I
Sbjct: 570 KDPKEFSRLTQNLQMNQYDFRIRAREDNYNDQTRI 604
>gi|449547245|gb|EMD38213.1| hypothetical protein CERSUDRAFT_113363 [Ceriporiopsis subvermispora
B]
Length = 618
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 164/535 (30%), Positives = 259/535 (48%), Gaps = 97/535 (18%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AML+TQLN +I + +++ TI + ++ + V + +LI+L L +++ + K
Sbjct: 63 AMLSTQLNYLIEENHIAKHTIAIVDKFACNMVQG-----KRLLIVLGLTVLEKTAD---K 114
Query: 395 IGNP----QPLNTNTDNSSTQQTPAATNTNGSNGVHNNV-----------------AIPR 433
+G P P + + S P A+ + S ++ R
Sbjct: 115 VGEPTALQAPPSARSGAESASPAPEASASAISAPTPAPAPAPAPAPAPAHAPTPQQSVQR 174
Query: 434 QAS--APVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEI 491
Q S + +PI SLSPY N WTIKA VT K+ IR+W+N RG GKLFS+ +D++GEI
Sbjct: 175 QGSRGSRGSAIYPIESLSPYMNNWTIKALVTQKSGIRKWSNDRGEGKLFSVVFVDDTGEI 234
Query: 492 RATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDE 551
+AT FN + H +++ KVY +S + A KKF+++ N+YE++ +T V C +
Sbjct: 235 KATAFNQAADDLHARLQEGKVYLVSKGRVGLAKKKFNNVVNEYELTLERTTEVEECR--D 292
Query: 552 VGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ 611
V N+P+VKY FV + + + D D++ V + + +T K++ +T KR++TLVD+
Sbjct: 293 VVNVPTVKYNFVDIAGLQNVEKDAICDIIAVIKETGPMGEITTKSSNRTITKRELTLVDR 352
Query: 612 SQASVTMTLWGKEAETFDASNK-PVIAVKAARVSEFQG---------------------- 648
S SV +TLWG +AE ++A ++ PV+A K +V +FQG
Sbjct: 353 SGYSVRLTLWGAQAEQWNAGDEHPVVAFKGVKVGDFQGRSLSMSMSSSMQLNPDIPDAHL 412
Query: 649 --------------------------NLLLMRE-------IQDQQLGMGDKADYCSVRGI 675
L RE +++Q G DK + S R
Sbjct: 413 LRGWYDGGGAEQSYQSHANNSGSGGSGLAFKREEVLPVQEVKEQGFGEPDKGEIFSSRAT 472
Query: 676 IQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSV 735
I R N TY ACP+ C+KKVI+ ++G +RCEKCN YR I+ + DW+
Sbjct: 473 IMHVRPENLTYPACPT--CHKKVIEAHDG-WRCEKCNMSHEKPQYRYIITAAVADWSGQA 529
Query: 736 WVTLFQNEAESILGVTAQEVGE-----STEDHPALKKALFTQYIFRLRAKLEHYN 785
W F + I G++ E+ E TE L + + + Y F RAK ++YN
Sbjct: 530 WFQGFNEMGQVIFGMSGDELMEIKERSDTEMQNVLSRVIGSTYNFVCRAKQDNYN 584
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/335 (35%), Positives = 190/335 (56%), Gaps = 16/335 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A KKF+++ N+YE++ +T V C + V N+P+VKY FV + + + D D++ V
Sbjct: 266 AKKKFNNVVNEYELTLERTTEVEECRD--VVNVPTVKYNFVDIAGLQNVEKDAICDIIAV 323
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNK-PVIAVKAA 124
+ + +T K++ +T KR++TLVD+S SV +TLWG +AE ++A ++ PV+A K
Sbjct: 324 IKETGPMGEITTKSSNRTITKRELTLVDRSGYSVRLTLWGAQAEQWNAGDEHPVVAFKGV 383
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGGGAA- 182
+V +FQ G++LS+SMSS + LNPDIP+ H L+GW+ ++ + +G G G A
Sbjct: 384 KVGDFQ-GRSLSMSMSSSMQLNPDIPDAHLLRGWYDGGGAEQSYQSHANNSGSGGSGLAF 442
Query: 183 --GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGM 240
+L ++E+++Q G DK + S R I R N TY ACP+ C+KKVI+ ++G
Sbjct: 443 KREEVLPVQEVKEQGFGEPDKGEIFSSRATIMHVRPENLTYPACPT--CHKKVIEAHDG- 499
Query: 241 YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-----STE 295
+RCEKCN YR I+ + DW+ W F + I G++ E+ E TE
Sbjct: 500 WRCEKCNMSHEKPQYRYIITAAVADWSGQAWFQGFNEMGQVIFGMSGDELMEIKERSDTE 559
Query: 296 DHPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVN 330
L + + + Y F RAK ++YN + GV+
Sbjct: 560 MQNVLSRVIGSTYNFVCRAKQDNYNDNVRTRYGVS 594
>gi|390367630|ref|XP_003731293.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Strongylocentrotus purpuratus]
Length = 575
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 137/329 (41%), Positives = 202/329 (61%), Gaps = 11/329 (3%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PAN++++SINNDYE++F + T V PC E++V ++P+V++ F + + + D IDV+G
Sbjct: 221 PANRQYTSINNDYELTFNNDTMVEPCVEEDV-SIPAVQFDFKSISHLEDTPEDSMIDVIG 279
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
VC ++L++VT K++ + KR + LVD SQ + + EAE FD S PVIAVK A
Sbjct: 280 VCKSTSDLTAVTIKSSNREVNKRSLQLVDDSQ-NEPLASNSAEAEDFDGSGNPVIAVKGA 338
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ--TNTRFEPVSQRTGGMGGGAA 182
R+S F GG++LS+ +S+ +NPDIP+ H L+GW T T + +S R G GGG A
Sbjct: 339 RLSGF-GGRSLSVLQNSIFQVNPDIPKAHHLKGWCLTARVTPQDSQSISTRQGSGGGGGA 397
Query: 183 G-NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMY 241
N + ++ Q LG G+K DY +V+G I R N Y ACPS +CNKKV + +G Y
Sbjct: 398 NTNWMTFHDVHAQNLGQGEKPDYFTVKGTILFVRKENCMYMACPSAECNKKVSENGDGSY 457
Query: 242 RCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-----STED 296
RCEKC+K++ F YRL+L + D T++ W T FQ AE +L +AQE+G E
Sbjct: 458 RCEKCSKDYENFKYRLLLSANVADSTDNQWATCFQETAEQLLLKSAQELGSLKDQNEKEF 517
Query: 297 HPALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ + A F Y+FR+R K+E YN ++
Sbjct: 518 NQVFQDACFIDYMFRMRIKMETYNEEARL 546
Score = 248 bits (634), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 170/541 (31%), Positives = 256/541 (47%), Gaps = 144/541 (26%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AMLATQLN++++ G L +++K Y + + A +R V+++L+L+I+K G+EIG
Sbjct: 57 AMLATQLNEMVSTGELDVKAAMKLKNYSCNPI----ANDRRVIVVLDLDIVKKGSEIGVS 112
Query: 395 IGNPQPL--------------NTNTDNSSTQQTP----------------AATNTNGSNG 424
IG+P P+ + D++ + P A N G+
Sbjct: 113 IGDPTPMRAPGQGGGPAPAQQQSRPDSTVSHDPPQTARPTSYGTGAAPASATPNKQGTFY 172
Query: 425 VHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDL 484
+N A+ ++P + PI SL+PYQN+ P+ N
Sbjct: 173 GQSNSAMGGSTTSPK-KVQPISSLTPYQNR-----------PLGHLPN------------ 208
Query: 485 LDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTV 544
+ VY++S TLKPAN++++SINNDYE++F + T V
Sbjct: 209 -------------------------NIVYFVSRGTLKPANRQYTSINNDYELTFNNDTMV 243
Query: 545 IPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKR 604
PC E++V ++P+V++ F + + + D IDV+GVC ++L++VT K++ + KR
Sbjct: 244 EPCVEEDV-SIPAVQFDFKSISHLEDTPEDSMIDVIGVCKSTSDLTAVTIKSSNREVNKR 302
Query: 605 DITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL--LMREI------ 656
+ LVD SQ + + EAE FD S PVIAVK AR+S F G L L I
Sbjct: 303 SLQLVDDSQ-NEPLASNSAEAEDFDGSGNPVIAVKGARLSGFGGRSLSVLQNSIFQVNPD 361
Query: 657 ------------------QDQQ----------------------------LGMGDKADYC 670
QD Q LG G+K DY
Sbjct: 362 IPKAHHLKGWCLTARVTPQDSQSISTRQGSGGGGGANTNWMTFHDVHAQNLGQGEKPDYF 421
Query: 671 SVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGD 730
+V+G I R N Y ACPS +CNKKV + +G YRCEKC+K++ F YRL+L + D
Sbjct: 422 TVKGTILFVRKENCMYMACPSAECNKKVSENGDGSYRCEKCSKDYENFKYRLLLSANVAD 481
Query: 731 WTNSVWVTLFQNEAESILGVTAQEVGE-----STEDHPALKKALFTQYIFRLRAKLEHYN 785
T++ W T FQ AE +L +AQE+G E + + A F Y+FR+R K+E YN
Sbjct: 482 STDNQWATCFQETAEQLLLKSAQELGSLKDQNEKEFNQVFQDACFIDYMFRMRIKMETYN 541
Query: 786 K 786
+
Sbjct: 542 E 542
>gi|449488185|ref|XP_004157962.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Cucumis sativus]
Length = 623
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 174/552 (31%), Positives = 263/552 (47%), Gaps = 116/552 (21%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AMLATQLND++ G + + +++Q+ Y+ S + NR ++++L L I EI
Sbjct: 52 AMLATQLNDVVKTGRVKKGSVIQLIDYVCSPIK-----NRKIIVVLCLETIILDCEI--- 103
Query: 395 IGNPQPLNTNTDNSSTQQTPAAT----------NTNGSNGVHN----------------- 427
IGNP+ + ++N + + TP+ + + N VHN
Sbjct: 104 IGNPKS-SAQSENFAQKATPSVNLEQPAKVGNGHLSARNPVHNVQSFQATVQPPYQPPPN 162
Query: 428 ----NVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSID 483
I +A A ++ PI +L+PYQ +W IKARVT K +R +NNA+G GK+FS D
Sbjct: 163 YKNHGAIIKNEAPARII---PIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFD 219
Query: 484 LLD-ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHST 542
LLD + GEIR T FN +RF+++IE KVY IS +LKPA K F+ + N++E+ S+
Sbjct: 220 LLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASS 279
Query: 543 TVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYM 602
TV C DE +P ++ F P+ I + +DV+G+ V K +T
Sbjct: 280 TVELC-PDEDDTIPRQQFSFKPISEIENAETNSILDVIGIVTSINPSIPVLRKNGMET-Q 337
Query: 603 KRDITLVDQSQASVTMTLWG--------KEAETFDASNKPVIAVKAARVSEFQGNLL--- 651
+R + L D S SV +T+WG K E + PV+AVK+ +VS+F G +
Sbjct: 338 RRVVYLKDASGRSVELTMWGDFCNKEGQKLQEIIYSGLSPVLAVKSGKVSDFTGKSIGTI 397
Query: 652 ---------------LMRE---------------------------------IQDQQLGM 663
++RE I+D+ LG
Sbjct: 398 SSTQLFINPDLPEAHILREWYDGGGKNTTSLSISKEIVPGSAKNDIRKTVSQIKDEGLGR 457
Query: 664 GDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFT 719
DK D+ +V+ I + + Y ACP + CNKKV N + C++CN+EF
Sbjct: 458 ADKPDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVTRSGNSKWVCDRCNQEFEDCD 517
Query: 720 YRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV----GESTED---HPALKKALFTQ 772
YR +L I D T WVT FQ E ILGV+ +E+ E +D ++ +F Q
Sbjct: 518 YRYLLQAQIQDHTGLTWVTAFQETGEEILGVSGKELYMLKYEEQDDVKFGEIIRSKIFDQ 577
Query: 773 YIFRLRAKLEHY 784
++FRL+ K E Y
Sbjct: 578 FLFRLKIKEEVY 589
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 110/346 (31%), Positives = 175/346 (50%), Gaps = 26/346 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K F+ + N++E+ S+TV C DE +P ++ F P+ I + +DV+G
Sbjct: 259 PARKDFNHLKNEWEVFLEASSTVELC-PDEDDTIPRQQFSFKPISEIENAETNSILDVIG 317
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG--------KEAETFDASNK 116
+ V K +T +R + L D S SV +T+WG K E +
Sbjct: 318 IVTSINPSIPVLRKNGMET-QRRVVYLKDASGRSVELTMWGDFCNKEGQKLQEIIYSGLS 376
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTG 175
PV+AVK+ +VS+F G K++ S+ L +NPD+PE H L+ W+ NT +S+
Sbjct: 377 PVLAVKSGKVSDFTG-KSIGTISSTQLFINPDLPEAHILREWYDGGGKNTTSLSISKEI- 434
Query: 176 GMGGGAAGNLL-LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCN 230
+ G A ++ + +I+D+ LG DK D+ +V+ I + + Y ACP + CN
Sbjct: 435 -VPGSAKNDIRKTVSQIKDEGLGRADKPDWITVKATISFIKTDSFCYTACPLMIGDRQCN 493
Query: 231 KKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 290
KKV N + C++CN+EF YR +L I D T WVT FQ E ILGV+ +E+
Sbjct: 494 KKVTRSGNSKWVCDRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQETGEEILGVSGKEL 553
Query: 291 ----GESTED---HPALKKALFTQYIFRLRAKLEHYNGTKKIPDGV 329
E +D ++ +F Q++FRL+ K E Y +++ + V
Sbjct: 554 YMLKYEEQDDVKFGEIIRSKIFDQFLFRLKIKEEVYGDEQRVKNTV 599
>gi|403416914|emb|CCM03614.1| predicted protein [Fibroporia radiculosa]
Length = 609
Score = 248 bits (634), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 144/363 (39%), Positives = 216/363 (59%), Gaps = 21/363 (5%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AMLATQLN ++ D +++ +I I+++ + V ++ +LIIL L I+ + K
Sbjct: 64 AMLATQLNHLVEDEKITKHSIATIEKFTCNLVQ-----DKRLLIILSLQIVAKDSS---K 115
Query: 395 IGNPQPLNT----NTDNSSTQQTPAATNTNGSNGVHNNVAI----PRQASAPVVQT-HPI 445
IGNP P+ + N + Q+T A +T+ A+ PRQ + T +PI
Sbjct: 116 IGNPTPIQSPSGPNAAGALPQKTAPAASTSTMTARPPPAALAQQPPRQQTRNGRNTVYPI 175
Query: 446 VSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHD 505
SLSPYQN W IKARV+ K+ ++ W+N RG GKLFS+ L+DE+GEI+ T FN+ + +D
Sbjct: 176 ESLSPYQNHWMIKARVSQKSDVKTWSNQRGEGKLFSVTLMDETGEIKGTGFNNAVDELYD 235
Query: 506 MIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPL 565
++ KVY++S + A KKFS++ N+YE++F +T V C+ +V N+P+V+Y FV +
Sbjct: 236 KFQEGKVYFVSKARVNLAKKKFSNVQNEYELTFERNTEVEECH--DVTNVPTVRYNFVDI 293
Query: 566 KTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA 625
++EI+ D DV+GV D +L +T KT KT KRD+TLVD+S SV +TLWGK+A
Sbjct: 294 GKLSEITKDSVCDVIGVVKDVGQLGEITSKTTNKTVSKRDLTLVDRSGFSVRLTLWGKQA 353
Query: 626 ETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT 685
ETF A ++PVIA K +V +F G L M Q+ D D ++RG G +
Sbjct: 354 ETFVAEDQPVIAFKGVKVGDFGGRTLSMFSSSTMQVN-PDIPDAHALRGWFDA-AGVDQN 411
Query: 686 YKA 688
Y+A
Sbjct: 412 YQA 414
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 190/331 (57%), Gaps = 15/331 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A KKFS++ N+YE++F +T V C++ V N+P+V+Y FV + ++EI+ D DV+GV
Sbjct: 253 AKKKFSNVQNEYELTFERNTEVEECHD--VTNVPTVRYNFVDIGKLSEITKDSVCDVIGV 310
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D +L +T KT KT KRD+TLVD+S SV +TLWGK+AETF A ++PVIA K +
Sbjct: 311 VKDVGQLGEITSKTTNKTVSKRDLTLVDRSGFSVRLTLWGKQAETFVAEDQPVIAFKGVK 370
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST-----QTNTRFEPVSQRTGGMGGG 180
V +F GG+TLS+ SS + +NPDIP+ H L+GWF + G G
Sbjct: 371 VGDF-GGRTLSMFSSSTMQVNPDIPDAHALRGWFDAAGVDQNYQAQSSSGGGGGGSYGQF 429
Query: 181 AAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGM 240
+L + ++++++GM DK D+ R I + N Y AC + CNKKVI+ ++G
Sbjct: 430 ERAEILPVNTVKEREMGMSDKPDFFLCRATIMHLKTENIAYPACHTDGCNKKVIEGHDG- 488
Query: 241 YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL-GVTAQEVGESTE-DHP 298
+RCE+C++ + YR I+ + D++ W+ F + + I +A EV E + D
Sbjct: 489 WRCERCDRSWEKPQYRYIVSLAAADYSGQAWLQGFNDAGQVIFDSKSADEVVEVKDRDDV 548
Query: 299 ALKK----ALFTQYIFRLRAKLEHYNGTKKI 325
A K A+ Y F RAK E +N + +I
Sbjct: 549 AFNKIVEQAMGKTYNFVCRAKQETFNDSTRI 579
>gi|169600091|ref|XP_001793468.1| hypothetical protein SNOG_02875 [Phaeosphaeria nodorum SN15]
gi|160705373|gb|EAT89606.2| hypothetical protein SNOG_02875 [Phaeosphaeria nodorum SN15]
Length = 578
Score = 244 bits (624), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 166/521 (31%), Positives = 263/521 (50%), Gaps = 84/521 (16%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
M+AT NDI+T G L + +IV++ +Y V ++++LII+EL ++ E+ KI
Sbjct: 28 MIATTANDIVTSGQLKKGSIVRLVKYNPQQVK-----DKNILIIMELEVLSQYGELD-KI 81
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVA------IPRQASAPVVQTHP----I 445
G P+ L+T +D PAA + N G A +P S P +HP I
Sbjct: 82 GQPEALDTKSDPPQ----PAAISGNNFYGSKQPPAPQPQRNLPVHQSNPATSSHPHLYPI 137
Query: 446 VSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHD 505
SLSPY +KWTI+AR TNK+ ++EW+NA+G+GKLFS++LLD++GEIRAT F + +
Sbjct: 138 ESLSPYAHKWTIRARCTNKSDMKEWHNAKGTGKLFSVNLLDDTGEIRATAFTEAAEKLFP 197
Query: 506 MIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP 564
+ E VYYIS C + A K+FS++ NDYE+ F T V + + N P +++ F
Sbjct: 198 VFEVGTVYYISAPCRVTLAKKQFSNLPNDYELQFEKDTEVEKAEDQD--NKPQIRFNFTK 255
Query: 565 LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE 624
+ + + D ID +GV + AE++++T K K + KR++TL D SQ SV +T+WGK
Sbjct: 256 IGDLNSVEKDTTIDTVGVLKEVAEVNTITSKNTNKDFSKRELTLADDSQTSVRLTIWGKT 315
Query: 625 AETFDASNKPVIAVKAARVSEF---------QGNLLLMREIQDQQL------GMGDKADY 669
AETFDA + +IA K +VS+F G++++ +I + +G A +
Sbjct: 316 AETFDAPLESIIAFKGVKVSDFGGRSLSLLSSGSMMVDPDIDEAHKLRGWFNAVGQNATF 375
Query: 670 CSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK------------------- 710
+ + + GS+ SQ ++ Q+ Y K
Sbjct: 376 STHQNMAGASGGSSKNENKLISQCIEEETYLQDTPSYMSLKASVVYVKNTTVAYPACSTA 435
Query: 711 -CNKE-----------------FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA 752
CNK+ F YR +L V + D T ++W++ F +SI+G++A
Sbjct: 436 GCNKKVIEENPGSWWCEKCQQSFPEPNYRYVLSVNVADHTGTLWLSCFDEAGQSIVGMSA 495
Query: 753 QEVGESTEDHP---------ALKKALFTQYIFRLRAKLEHY 784
E + D A+++A + FR+RAK+E Y
Sbjct: 496 NEAMKIKVDDEENNTQNFMTAMQEATCKTFNFRVRAKMETY 536
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/329 (34%), Positives = 179/329 (54%), Gaps = 13/329 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ NDYE+ F T V + + N P +++ F + + + D ID +GV
Sbjct: 216 AKKQFSNLPNDYELQFEKDTEVEKAEDQD--NKPQIRFNFTKIGDLNSVEKDTTIDTVGV 273
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ AE++++T K K + KR++TL D SQ SV +T+WGK AETFDA + +IA K +
Sbjct: 274 LKEVAEVNTITSKNTNKDFSKRELTLADDSQTSVRLTIWGKTAETFDAPLESIIAFKGVK 333
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGGGAAGN 184
VS+F G LS S++ ++PDI E HKL+GWF + N F G GG +
Sbjct: 334 VSDFGGRSLSLLSSGSMM-VDPDIDEAHKLRGWFNAVGQNATFSTHQNMAGASGGSSKNE 392
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
L+ + +++ + D Y S++ + + + Y AC + CNKKVI++N G + CE
Sbjct: 393 NKLISQCIEEETYLQDTPSYMSLKASVVYVKNTTVAYPACSTAGCNKKVIEENPGSWWCE 452
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP------ 298
KC + F YR +L V + D T ++W++ F +SI+G++A E + D
Sbjct: 453 KCQQSFPEPNYRYVLSVNVADHTGTLWLSCFDEAGQSIVGMSANEAMKIKVDDEENNTQN 512
Query: 299 ---ALKKALFTQYIFRLRAKLEHYNGTKK 324
A+++A + FR+RAK+E Y K
Sbjct: 513 FMTAMQEATCKTFNFRVRAKMETYQDQPK 541
>gi|164657638|ref|XP_001729945.1| hypothetical protein MGL_2931 [Malassezia globosa CBS 7966]
gi|159103839|gb|EDP42731.1| hypothetical protein MGL_2931 [Malassezia globosa CBS 7966]
Length = 567
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 137/353 (38%), Positives = 201/353 (56%), Gaps = 51/353 (14%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLATQL ++ +G+L +V++ ++ +S + NR +LI+L L +I P + +I
Sbjct: 1 MLATQLKPLVENGSLDRNVVVRVTQF-----TSNTVQNRKILILLNLEVISPA--LPHRI 53
Query: 396 GNPQPLNTNTDNS----STQQTPAATNTNGSNGVHNNVAIPRQASAPVV----------- 440
GNPQ + + ++ T+ P AT H +V P A AP +
Sbjct: 54 GNPQNIESAKSSADASVETKAVPGATP-------HADVKPPAPAMAPSLGAQALSGSHGD 106
Query: 441 ----------------QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDL 484
+PI +LSPYQNKWTIKARVT KT IR W+NARG GKLFS++L
Sbjct: 107 SARVGSRGVAKSSSGMPVYPIDALSPYQNKWTIKARVTLKTDIRHWSNARGDGKLFSVNL 166
Query: 485 LDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTV 544
LDESGEIRAT FND +RF+ +++++KVY+IS + A K+FS++ N+YE+S + +
Sbjct: 167 LDESGEIRATAFNDAVDRFYPVLQENKVYFISKAKVTIAKKQFSTLPNEYEISLESGSEI 226
Query: 545 IPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKR 604
C E G++P VKY FV + + + P++ DV+ + ++S + K Q+ KR
Sbjct: 227 EECA--EAGDVPEVKYNFVSIDQLTTVEPNQTTDVITILDGYTDVSEILSKATQRPIKKR 284
Query: 605 DITLVDQSQASVTMTLWGKEAETFDAS----NKPVIAVKAARVSEFQGNLLLM 653
D+TL+D S SV MTLWG +AE F+ + KPVIA K +VS+F G L M
Sbjct: 285 DLTLIDSSGMSVRMTLWGSQAENFEKTIAGEEKPVIAFKGVKVSDFGGRSLSM 337
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 117/338 (34%), Positives = 190/338 (56%), Gaps = 22/338 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ N+YE+S + + C E G++P VKY FV + + + P++ DV+ +
Sbjct: 205 AKKQFSTLPNEYEISLESGSEIEECAE--AGDVPEVKYNFVSIDQLTTVEPNQTTDVITI 262
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS----NKPVIAV 121
++S + K Q+ KRD+TL+D S SV MTLWG +AE F+ + KPVIA
Sbjct: 263 LDGYTDVSEILSKATQRPIKKRDLTLIDSSGMSVRMTLWGSQAENFEKTIAGEEKPVIAF 322
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR--------FEPVSQR 173
K +VS+F GG++LS+ SS +S+NPDIPE H L+GW+ + N+ + +
Sbjct: 323 KGVKVSDF-GGRSLSMFSSSTMSINPDIPESHGLRGWYDNEGNSAHIRSYGATLDGTTAS 381
Query: 174 TGGMGGGAAGNLLLMREIQDQQLGMG-DKADYCSVRGIIQVFRGSNTTYKACPSQDCNKK 232
G A + +++D+ LG ++ADY + R ++ R + Y ACP QDCNKK
Sbjct: 382 ALNQGALRANEFRTLAQVKDESLGTSFERADYFNARAVVLYIRPNTLYYTACPGQDCNKK 441
Query: 233 VIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE 292
VI++++G +RCEKC++ + R I I D++ +W++ F ++LG+TA E+
Sbjct: 442 VIEESDG-WRCEKCDRSYPAPVRRYIFSANIADYSGQIWISGFNEVGVALLGMTADELDS 500
Query: 293 STEDHPALKKALFTQYI-----FRLRAKLEHYNGTKKI 325
++ KA+ T+ I F RAK E +N T ++
Sbjct: 501 IRNENEGEFKAVLTRVIGRVMDFHCRAKQETFNDTNRV 538
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 90/165 (54%), Gaps = 11/165 (6%)
Query: 627 TFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMG-DKADYCSVRGIIQVFRGSNTT 685
T D + + A R +EF+ + +++D+ LG ++ADY + R ++ R +
Sbjct: 374 TLDGTTASALNQGALRANEFR----TLAQVKDESLGTSFERADYFNARAVVLYIRPNTLY 429
Query: 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
Y ACP QDCNKKVI++++G +RCEKC++ + R I I D++ +W++ F
Sbjct: 430 YTACPGQDCNKKVIEESDG-WRCEKCDRSYPAPVRRYIFSANIADYSGQIWISGFNEVGV 488
Query: 746 SILGVTAQEVGESTEDHPALKKALFTQYI-----FRLRAKLEHYN 785
++LG+TA E+ ++ KA+ T+ I F RAK E +N
Sbjct: 489 ALLGMTADELDSIRNENEGEFKAVLTRVIGRVMDFHCRAKQETFN 533
>gi|448117323|ref|XP_004203227.1| Piso0_000828 [Millerozyma farinosa CBS 7064]
gi|359384095|emb|CCE78799.1| Piso0_000828 [Millerozyma farinosa CBS 7064]
Length = 629
Score = 242 bits (618), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 141/445 (31%), Positives = 220/445 (49%), Gaps = 78/445 (17%)
Query: 412 QTPAATNTNGSNGVHNNVAIPRQASA-PVVQTHPIVSLSPYQNKWTIKARVTNKTPIREW 470
Q P+ + + SNG A P+ AS Q + I LSPYQN WTIKARV+ K IR+W
Sbjct: 159 QPPSNRSVSPSNG-----AAPKGASMFQQRQVNAIEQLSPYQNHWTIKARVSYKGDIRKW 213
Query: 471 NNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSI 530
+NARG GKLF+++ LDES EIRAT FND ++F+ +E+ KVYY+S ++ + +FS +
Sbjct: 214 SNARGEGKLFNVNFLDESDEIRATAFNDLADKFYQQLEEGKVYYVSKARIQQSKPQFSHL 273
Query: 531 NNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELS 590
++ YE++ T + C + N+P + + F L I + +DV+GV + +
Sbjct: 274 SHPYELALDRDTVIEECF--DTSNVPKIHFNFTKLNDIENAEANSIVDVIGVLKEVNPVF 331
Query: 591 SVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNL 650
+T K+ K + +R+IT+VD S ++T+ LW A F S VIA K ++ +F G
Sbjct: 332 QITAKSTGKPFDRRNITIVDDSNVAITVGLWNTSAVDFTVSEGSVIAFKGCKIQDFAGRS 391
Query: 651 LLMR---------------------------------------------------EIQDQ 659
L + + Q++
Sbjct: 392 LTLTHAGSMMVNPDTPEAYSLKGWFDNKGVHENFKSLKNENSATKNAFNSRKSILQAQEE 451
Query: 660 QLGMGDKADYCSVRGIIQVFRGSNTTYKACP----------SQDCNKKVIDQNNGMYRCE 709
LGM +K D+ +++ I F+ N Y AC S CN+KV++Q++G +RCE
Sbjct: 452 NLGMSEKPDFFNIKATINFFKTENFCYPACNNVLDSGSQQLSNTCNRKVVEQSDGTWRCE 511
Query: 710 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV---------GESTE 760
KC+ F YR IL + D T +W+TLF EA+ + G+ A E+ GE++E
Sbjct: 512 KCDMNFAEPHYRYILNCSVMDSTGQLWITLFDQEAQKLFGIPAGELLKLKEQQMNGENSE 571
Query: 761 DHPALKKALFTQYIFRLRAKLEHYN 785
+ + FRL+A+ + YN
Sbjct: 572 FQKIINDVTMKGFNFRLKARQDSYN 596
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 173/337 (51%), Gaps = 24/337 (7%)
Query: 9 KFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCID 68
+FS +++ YE++ T + C + N+P + + F L I + +DV+GV +
Sbjct: 269 QFSHLSHPYELALDRDTVIEECFD--TSNVPKIHFNFTKLNDIENAEANSIVDVIGVLKE 326
Query: 69 AAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSE 128
+ +T K+ K + +R+IT+VD S ++T+ LW A F S VIA K ++ +
Sbjct: 327 VNPVFQITAKSTGKPFDRRNITIVDDSNVAITVGLWNTSAVDFTVSEGSVIAFKGCKIQD 386
Query: 129 FQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAGNLLL 187
F G++L+L+ + + +NPD PE + L+GWF + + F+ + +
Sbjct: 387 F-AGRSLTLTHAGSMMVNPDTPEAYSLKGWFDNKGVHENFKSLKNENSATKNAFNSRKSI 445
Query: 188 MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----------SQDCNKKVIDQN 237
+ + Q++ LGM +K D+ +++ I F+ N Y AC S CN+KV++Q+
Sbjct: 446 L-QAQEENLGMSEKPDFFNIKATINFFKTENFCYPACNNVLDSGSQQLSNTCNRKVVEQS 504
Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV------- 290
+G +RCEKC+ F YR IL + D T +W+TLF EA+ + G+ A E+
Sbjct: 505 DGTWRCEKCDMNFAEPHYRYILNCSVMDSTGQLWITLFDQEAQKLFGIPAGELLKLKEQQ 564
Query: 291 --GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
GE++E + + FRL+A+ + YNG ++
Sbjct: 565 MNGENSEFQKIINDVTMKGFNFRLKARQDSYNGVLRV 601
>gi|320591361|gb|EFX03800.1| replication protein a DNA-binding subunit [Grosmannia clavigera
kw1407]
Length = 631
Score = 242 bits (618), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 147/353 (41%), Positives = 208/353 (58%), Gaps = 52/353 (14%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGF-- 393
MLATQ N ++ DG L +IV+IK Y + V +++LIIL+L++I+ +G
Sbjct: 71 MLATQGNHVVHDGKLVRGSIVRIKAYQANAVK-----GKNILIILDLDVIE---SLGAHD 122
Query: 394 KIGNPQPLNTNTDNSSTQQTPAATNTN---------------------------GSNGVH 426
KIG P P++ SS Q AAT+TN G+NG
Sbjct: 123 KIGEPTPVD-----SSIQPVAAATSTNIGGTNFYGVKKEEPDTKQGIRGSIGAAGNNG-- 175
Query: 427 NNVAIPRQAS-----APVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFS 481
N+ P S A +PI LSPY +KWTIKARVT+K+ IR W+ + G GKLFS
Sbjct: 176 NSTGKPSGTSYGGSNAAHPNIYPIEGLSPYSHKWTIKARVTSKSEIRTWHKSSGEGKLFS 235
Query: 482 IDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTH 540
++LLDESGEI+AT FN++C++++D++++ VYYIS+ C + A K+FS++ NDYE+SF
Sbjct: 236 VNLLDESGEIKATGFNEQCDQYYDLLQEGSVYYISSPCRVNIAKKQFSNLPNDYELSFER 295
Query: 541 STTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKT 600
T I ED+ ++P V+Y F L+ + + D IDV+GV D E+SS+T K++ K
Sbjct: 296 DTQ-IEKAEDQ-SSVPQVRYAFCTLQALQSVEKDAVIDVIGVLRDVGEVSSITSKSSGKP 353
Query: 601 YMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM 653
Y KR++TLVD S SV T+WGK A FDA + VIA K RVS+F G L +
Sbjct: 354 YEKRELTLVDDSSFSVRTTIWGKTAVAFDAKPESVIAFKGVRVSDFGGRSLSL 406
Score = 202 bits (515), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 185/332 (55%), Gaps = 18/332 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ NDYE+SF T I ED+ ++P V+Y F L+ + + D IDV+GV
Sbjct: 278 AKKQFSNLPNDYELSFERDTQ-IEKAEDQ-SSVPQVRYAFCTLQALQSVEKDAVIDVIGV 335
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D E+SS+T K++ K Y KR++TLVD S SV T+WGK A FDA + VIA K R
Sbjct: 336 LRDVGEVSSITSKSSGKPYEKRELTLVDDSSFSVRTTIWGKTAVAFDAKPESVIAFKGVR 395
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAG-- 183
VS+F GG++LSL S V+S++PDI E H L+GW+ R E S G G
Sbjct: 396 VSDF-GGRSLSLLQSGVMSIDPDITEAHHLKGWYDAA--GRSENFSSHNSMGGMGGGAGS 452
Query: 184 ----NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNG 239
+ + +++D+ +GM D+ Y +++ I + Y AC S C+KKV+ ++G
Sbjct: 453 GRPEQVKTIAQVRDENIGM-DETAYFTLKATIVFIKQETFAYPACSSDGCSKKVVSSSDG 511
Query: 240 MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL-GVTAQEVGESTEDH- 297
+RCEKC+ YR + + + D T +W+T F + I+ G +A E+ E E+
Sbjct: 512 TWRCEKCDMNHPQALYRYTMMLNVNDHTGQLWLTCFDDVGRMIMGGRSADELTELREEDD 571
Query: 298 ----PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+KA +Y FR+RAK++ + ++I
Sbjct: 572 IAFGAEFEKANCRKYSFRVRAKMDTFGDAQRI 603
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 73/136 (53%), Gaps = 7/136 (5%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 714
+++D+ +GM D+ Y +++ I + Y AC S C+KKV+ ++G +RCEKC+
Sbjct: 463 QVRDENIGM-DETAYFTLKATIVFIKQETFAYPACSSDGCSKKVVSSSDGTWRCEKCDMN 521
Query: 715 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL-GVTAQEVGESTEDH-----PALKKA 768
YR + + + D T +W+T F + I+ G +A E+ E E+ +KA
Sbjct: 522 HPQALYRYTMMLNVNDHTGQLWLTCFDDVGRMIMGGRSADELTELREEDDIAFGAEFEKA 581
Query: 769 LFTQYIFRLRAKLEHY 784
+Y FR+RAK++ +
Sbjct: 582 NCRKYSFRVRAKMDTF 597
>gi|47227767|emb|CAG08930.1| unnamed protein product [Tetraodon nigroviridis]
Length = 416
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 147/397 (37%), Positives = 220/397 (55%), Gaps = 67/397 (16%)
Query: 315 KLEHYNGTKK----IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGS 370
K+E NG + + DG + S ML+TQLN +I + TL++ I +KR++ + + G
Sbjct: 4 KIEQGNGPTRYRVMMSDGRHTLSSFMLSTQLNYLIEENTLAQNCICVLKRHVTNILKDG- 62
Query: 371 ATNRSVLIILELNIIKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNG----VH 426
R V+IILE+++IK E+ KIG+P P + P +N + +NG +
Sbjct: 63 ---RRVVIILEIDVIKRAEEVAGKIGDPTPYTEAVWEVTVSNLPFRSNESTANGTKPRLS 119
Query: 427 NNVAIPRQ--------------ASAPVV-----QTHPIVSLSPYQNKWTIKARVTNKTPI 467
++ P Q ++ P + PI SL+PYQ+KWTI+AR+TNK+ I
Sbjct: 120 PSLTPPEQKRKGFSKDFGKKGPSAMPSTPGGGSKVVPIASLNPYQSKWTIRARITNKSSI 179
Query: 468 REWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKF 527
R W+NARG GKLFS++++DESGEIR T FN E ++F +IE KVYYIS CTLK ANK++
Sbjct: 180 RTWSNARGEGKLFSMEMVDESGEIRTTGFNQEVDKFFSLIEVGKVYYISKCTLKIANKQY 239
Query: 528 SSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAA 587
+S+ NDYEM+ +T+IPC ED ++P V+ FV + + D +DV+GVC
Sbjct: 240 TSVKNDYEMTLNGESTIIPC-EDSC-DVPLVQCDFVSISDLENKEKDAIVDVIGVCKSVD 297
Query: 588 ELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE----------------------- 624
E + +T ++N++ KR + L+D S VT+TLWG+E
Sbjct: 298 EATRLTTRSNREVS-KRTLHLMDMSGKLVTVTLWGEEVRTVRGTSVRRSFTLLNIRMKTA 356
Query: 625 ----------AETFDASNKPVIAVKAARVSEFQGNLL 651
AE FD S +PV+A+K A++S+F G L
Sbjct: 357 TRFPGRMNRLAENFDGSGEPVVAIKGAKLSDFGGRSL 393
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 105/186 (56%), Gaps = 37/186 (19%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+++S+ NDYEM+ +T+IPC ED ++P V+ FV + + D +DV+GV
Sbjct: 235 ANKQYTSVKNDYEMTLNGESTIIPC-EDSC-DVPLVQCDFVSISDLENKEKDAIVDVIGV 292
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE------------------ 107
C E + +T ++N++ KR + L+D S VT+TLWG+E
Sbjct: 293 CKSVDEATRLTTRSNREVS-KRTLHLMDMSGKLVTVTLWGEEVRTVRGTSVRRSFTLLNI 351
Query: 108 ---------------AETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPEC 152
AE FD S +PV+A+K A++S+F GG++LS S SS L +NPDIPE
Sbjct: 352 RMKTATRFPGRMNRLAENFDGSGEPVVAIKGAKLSDF-GGRSLSASFSSTLMINPDIPEA 410
Query: 153 HKLQGW 158
+KL+GW
Sbjct: 411 YKLRGW 416
>gi|449688518|ref|XP_004211765.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Hydra magnipapillata]
Length = 398
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 136/362 (37%), Positives = 212/362 (58%), Gaps = 52/362 (14%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
ML TQLND + + + ++Q+ +Y + + R V+IILEL I+ +E+ KI
Sbjct: 1 MLGTQLNDTVQEDMVEVRCVLQMDKYTCNVIQG----TRKVIIILELKIVLKASEVPGKI 56
Query: 396 GNP-QPLNTNTDNSSTQQTP-AATNTNGSNGVHN--------------NVAIPRQ----- 434
G P Q + T+ + P N NGS+ + N N+ +P +
Sbjct: 57 GEPVQISDLLTEQENLLPPPIKKENVNGSSKLQNISNQIKSASTNNTKNLPVPNKPLSNQ 116
Query: 435 ------------------ASAPVVQTH-----PIVSLSPYQNKWTIKARVTNKTPIREWN 471
+ VV ++ PI SL+PYQN+WTI+AR+TNK+ IR W+
Sbjct: 117 KPSAYSAANQKPSGYSTAGAGSVVDSNSKSVFPISSLTPYQNRWTIRARITNKSSIRTWS 176
Query: 472 NARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSIN 531
N+RG GKLFSIDL+DESGEIRAT FN+ ++++D++E KVYYI+ +LK ANK++SS+
Sbjct: 177 NSRGDGKLFSIDLVDESGEIRATAFNEVVDKYYDLLEIGKVYYITKGSLKTANKQYSSLK 236
Query: 532 NDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSS 591
NDYEM+ + + V CN ++ ++P++++ F +K+I +++ D ID++G+ ++E+
Sbjct: 237 NDYEMTLNNDSLVELCN--DLCDLPTLQFNFKQIKSIEDVNKDALIDIVGIVKSSSEMQQ 294
Query: 592 VTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD--ASNKPVIAVKAARVSEFQGN 649
+T K K KRDIT+VDQS ++V T+WG EAE F+ PV+A+K A+VS+F G
Sbjct: 295 ITSKATNKQVWKRDITIVDQSGSAVQATIWGSEAEKFEEYTDKNPVVAIKGAKVSDFGGR 354
Query: 650 LL 651
L
Sbjct: 355 SL 356
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 109/156 (69%), Gaps = 5/156 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK++SS+ NDYEM+ + + V CN+ + ++P++++ F +K+I +++ D ID++G+
Sbjct: 228 ANKQYSSLKNDYEMTLNNDSLVELCND--LCDLPTLQFNFKQIKSIEDVNKDALIDIVGI 285
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD--ASNKPVIAVKA 123
++E+ +T K K KRDIT+VDQS ++V T+WG EAE F+ PV+A+K
Sbjct: 286 VKSSSEMQQITSKATNKQVWKRDITIVDQSGSAVQATIWGSEAEKFEEYTDKNPVVAIKG 345
Query: 124 ARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF 159
A+VS+F GG++LS+ SS+ +NPDIPE ++L+GWF
Sbjct: 346 AKVSDF-GGRSLSILNSSIFHINPDIPEAYELRGWF 380
>gi|85102469|ref|XP_961333.1| replication factor-A protein 1 [Neurospora crassa OR74A]
gi|18376393|emb|CAD21282.1| probable single-stranded DNA-binding protein 68k chain [Neurospora
crassa]
gi|28922877|gb|EAA32097.1| replication factor-A protein 1 [Neurospora crassa OR74A]
gi|336473157|gb|EGO61317.1| hypothetical protein NEUTE1DRAFT_144541 [Neurospora tetrasperma
FGSC 2508]
gi|350293584|gb|EGZ74669.1| putative single-stranded DNA-binding protein 68k chain [Neurospora
tetrasperma FGSC 2509]
Length = 610
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 170/531 (32%), Positives = 269/531 (50%), Gaps = 99/531 (18%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGF-- 393
M+ATQ N ++ DG L IV++K+Y + +++LI+L+L +I+ +G
Sbjct: 64 MMATQTNHLVHDGLLQRGCIVRLKQYQAQCLKG-----KNILIVLDLEVIQ---SLGCPE 115
Query: 394 KIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVV------------- 440
K+G+PQPL + + QQ P GS G + + P Q + P
Sbjct: 116 KMGDPQPLGPRS--AEPQQNPNL----GSTGFYGVKSEPTQDTKPQFPRQMPSRNASGGQ 169
Query: 441 ---QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFN 497
+PI LSP+ +KWTIKARVT+K+ I+ W+ A G GKLFS++ LDESGEIRAT FN
Sbjct: 170 GSSTIYPIEGLSPFSHKWTIKARVTSKSDIKTWHKASGEGKLFSVNFLDESGEIRATGFN 229
Query: 498 DECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
D+ ++F+D++++ +VYYIS C ++ A K++S++ NDYE++F TVI ED+ ++P
Sbjct: 230 DQVDQFYDLLQEGQVYYISTPCRVQLAKKQWSNLPNDYELTFERD-TVIEKAEDQT-SVP 287
Query: 557 SVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
V++ FV ++ + ++ D +D++GV + E++ + KT QK Y KR++TLVD + SV
Sbjct: 288 QVRFNFVNIQELQDVERDATVDIIGVLKEVQEVTQIVSKTTQKPYDKRELTLVDNTGYSV 347
Query: 617 TMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMR---------EIQD--------- 658
T+WGK A FDA + ++A K +VS+F G L + +I +
Sbjct: 348 RCTIWGKTATNFDAQPESIVAFKGTKVSDFGGRSLSLLSSGTMAIDPDIPEAHHLKGWYD 407
Query: 659 --------------QQLG--MGDKADYCSVRGIIQVFRGSNTT--YKACPSQDCNKKVID 700
Q LG G K D ++ + + G+N Y A + I
Sbjct: 408 SSGRNNTFATHNNMQTLGGATGRKDDAKTISQVKEENLGTNEAPDYFALKA---TVVFIK 464
Query: 701 QNNGMY---RCEKCNKEFNTF-----------------TYRLILPVMIGDWTNSVWVTLF 740
Q+N Y R E CN++ YR I+ V + D T +W++ F
Sbjct: 465 QDNFAYPGCRSEGCNRKVTDMGDGTWRCEKCQINHDRPQYRYIMSVNVNDHTGQLWLSCF 524
Query: 741 QNEAESILGVTAQEVGESTEDHPALKKALFTQ-----YIFRLRAKLEHYNK 786
+ A I+G +A E+ E E A F Q FR RAK++ + +
Sbjct: 525 DDTARVIMGKSADELMEIRETDETRLPAEFEQANCRKLNFRCRAKMDTFGE 575
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 117/350 (33%), Positives = 196/350 (56%), Gaps = 13/350 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K++S++ NDYE++F T VI ED+ ++P V++ FV ++ + ++ D +D++GV
Sbjct: 256 AKKQWSNLPNDYELTFERDT-VIEKAEDQT-SVPQVRFNFVNIQELQDVERDATVDIIGV 313
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ E++ + KT QK Y KR++TLVD + SV T+WGK A FDA + ++A K +
Sbjct: 314 LKEVQEVTQIVSKTTQKPYDKRELTLVDNTGYSVRCTIWGKTATNFDAQPESIVAFKGTK 373
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF--STQTNTRFEPVSQRTGGMGGGAAG 183
VS+F GG++LSL S ++++PDIPE H L+GW+ S + NT + +T G G
Sbjct: 374 VSDF-GGRSLSLLSSGTMAIDPDIPEAHHLKGWYDSSGRNNTFATHNNMQTLGGATGRKD 432
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ + +++++ LG + DY +++ + + N Y C S+ CN+KV D +G +RC
Sbjct: 433 DAKTISQVKEENLGTNEAPDYFALKATVVFIKQDNFAYPGCRSEGCNRKVTDMGDGTWRC 492
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
EKC + YR I+ V + D T +W++ F + A I+G +A E+ E E A
Sbjct: 493 EKCQINHDRPQYRYIMSVNVNDHTGQLWLSCFDDTARVIMGKSADELMEIRETDETRLPA 552
Query: 304 LFTQ-----YIFRLRAKLEHYNGTKKIPD---GVNINSFAMLATQLNDII 345
F Q FR RAK++ + ++I V + M +LN++I
Sbjct: 553 EFEQANCRKLNFRCRAKMDTFGEQQRIRYQVMSVAPLDYKMEGNKLNELI 602
>gi|302770080|ref|XP_002968459.1| hypothetical protein SELMODRAFT_89304 [Selaginella moellendorffii]
gi|300164103|gb|EFJ30713.1| hypothetical protein SELMODRAFT_89304 [Selaginella moellendorffii]
Length = 636
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 167/575 (29%), Positives = 269/575 (46%), Gaps = 127/575 (22%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG + AMLATQLN+++ +GTL + +IV+++ YI + V +R ++I+L L++
Sbjct: 47 LSDGTAVQQ-AMLATQLNEVVKNGTLMKSSIVKLQEYICNTVK-----DRKIVIVLNLDV 100
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSST-------------QQTPAAT-------------- 417
+ T G + L S+ Q TPA +
Sbjct: 101 LAEATSFGGRPTETNSLGGRAAEGSSIGGRTPEPGSFGGQATPAVSPYGRPAEARRETIA 160
Query: 418 ------NTNGSNGVH----------NNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARV 461
+ GS + N I R P + PI +L+PY +WTIKAR+
Sbjct: 161 YGGRPAESMGSYAPNPPYGPPPTYTNRGPIARNEGPPGLV--PIAALNPYHGRWTIKARI 218
Query: 462 TNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTL 520
T+K+ +R +NNARG G++FS DLLD E GEIR T FN+ + F++ + ++Y +S +L
Sbjct: 219 TSKSDLRRFNNARGDGRVFSFDLLDAEGGEIRVTCFNNVADEFYERAQVGRLYMVSKGSL 278
Query: 521 KPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVL 580
+ A K+F+ + ND+E+ F + + PC ED ++P + F + I + + +D +
Sbjct: 279 RAAQKQFNHLKNDWEIMFEKDSVLDPCPEDS--SVPQQVFDFKQVSEIENLPNNAMVDAI 336
Query: 581 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEA----ETFDASN 632
GV + + +++ K +T +R + L D+S SV +T+WG +E E D+
Sbjct: 337 GVVVGVNQTTTIMRKNGTET-QRRTLQLRDRSGKSVEITMWGNFCTQEGQHLQELCDSGQ 395
Query: 633 KPVIAVKAARVSEFQG-----------------------NLLLMRE-------------- 655
P++A+KA RVS+F G L RE
Sbjct: 396 SPILAIKAGRVSDFSGKSLGTISSTRFQINPDHPEARSLQLWFEREGRHAQAQSISREGA 455
Query: 656 --------------IQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQ----DCNKK 697
I+D+ LG +K D+ ++R I + + Y ACP Q C+KK
Sbjct: 456 GGGGRTENRKTVSQIKDEGLGRSEKPDFVTIRATIHFIKTDSFCYTACPLQIGDRQCSKK 515
Query: 698 VIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA----- 752
V + +G +RCE+C++ YR +L + + D T + W+T FQ AE +LGV A
Sbjct: 516 VTNNGDGTWRCERCDRTVPECDYRYMLSIQVMDHTGATWLTGFQEAAEELLGVKAKDLFM 575
Query: 753 --QEVGESTEDHPALKKALFTQYIFRLRAKLEHYN 785
QE DH A FTQ+ F++R K E +N
Sbjct: 576 WKQEDNGRFLDHIA--SIQFTQHHFKVRIKEESFN 608
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 177/345 (51%), Gaps = 27/345 (7%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+F+ + ND+E+ F + + PC ED ++P + F + I + + +D +GV
Sbjct: 281 AQKQFNHLKNDWEIMFEKDSVLDPCPEDS--SVPQQVFDFKQVSEIENLPNNAMVDAIGV 338
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEA----ETFDASNKP 117
+ + +++ K +T +R + L D+S SV +T+WG +E E D+ P
Sbjct: 339 VVGVNQTTTIMRKNGTET-QRRTLQLRDRSGKSVEITMWGNFCTQEGQHLQELCDSGQSP 397
Query: 118 VIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGM 177
++A+KA RVS+F G K+L S+ +NPD PE LQ WF + R G
Sbjct: 398 ILAIKAGRVSDFSG-KSLGTISSTRFQINPDHPEARSLQLWFEREGRHAQAQSISREGAG 456
Query: 178 GGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQ----DCNKKV 233
GGG N + +I+D+ LG +K D+ ++R I + + Y ACP Q C+KKV
Sbjct: 457 GGGRTENRKTVSQIKDEGLGRSEKPDFVTIRATIHFIKTDSFCYTACPLQIGDRQCSKKV 516
Query: 234 IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA------ 287
+ +G +RCE+C++ YR +L + + D T + W+T FQ AE +LGV A
Sbjct: 517 TNNGDGTWRCERCDRTVPECDYRYMLSIQVMDHTGATWLTGFQEAAEELLGVKAKDLFMW 576
Query: 288 -QEVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNI 331
QE DH A FTQ+ F++R K E +N +++ VNI
Sbjct: 577 KQEDNGRFLDHIA--SIQFTQHHFKVRIKEESFNDEQRVK--VNI 617
>gi|401626961|gb|EJS44874.1| rfa1p [Saccharomyces arboricola H-6]
Length = 621
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 155/459 (33%), Positives = 234/459 (50%), Gaps = 87/459 (18%)
Query: 405 TDNSS-TQQT-----------PAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQ 452
TDNSS T QT + +N N S +N + Q S P+ I LSPYQ
Sbjct: 138 TDNSSATNQTNPGNVGLPDMLHSNSNLNASEKKFHNESSSSQKSKPIF---AIEQLSPYQ 194
Query: 453 NKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKV 512
N WTIKARV+ K I+ W+N RG GKLF+++ LD SGEIRAT FND +F++++++ KV
Sbjct: 195 NVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEIRATAFNDFATKFNEILQEGKV 254
Query: 513 YYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEIS 572
YY+S L+PA +F+++ + YE++ T V C ++ N+P + F+ L I
Sbjct: 255 YYVSKAKLQPAKPQFTNLTHPYELNLDRDTVVEECFDE--SNVPKTHFNFIKLDAIQNQE 312
Query: 573 PDENIDVLGV--CIDAA-ELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD 629
+ N+DVLGV I+ EL+S G K + +RDIT+VD S S+++ LW ++A F+
Sbjct: 313 VNSNVDVLGVIQTINPHFELTSRAG----KKFDRRDITIVDDSGFSISVGLWNQQALDFN 368
Query: 630 ASNKPVIAVKAARVSEFQGNLLLMR---------EIQD---------------------Q 659
V A+K RV++F G L M EI + Q
Sbjct: 369 LPEGSVAAIKGVRVTDFGGKSLSMGFSSTLIPNPEIPEAYALKGWYDSKGRNANFTTLKQ 428
Query: 660 QLGMG----------------------------DKADYCSVRGIIQVFRGSNTTYKACPS 691
+ GMG +K D+ SV+ + + N Y AC +
Sbjct: 429 EPGMGGQSAAGLTKFIAQRITIARAQAENLGRSEKGDFFSVKAAVSFLKVDNFAYPACSN 488
Query: 692 QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVT 751
++CNKKV++Q +G +RCEKC+ + +R IL + I D TN +W+TLF ++A+ +LGV
Sbjct: 489 ENCNKKVLEQPDGTWRCEKCDTNNASPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVD 548
Query: 752 AQEVGESTEDHP-----ALKKALFTQYIFRLRAKLEHYN 785
A + E+ P + +Y FR+RA+ + YN
Sbjct: 549 ANALMSLKEEDPNEFTKITQSIQMNEYDFRIRAREDTYN 587
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/334 (33%), Positives = 185/334 (55%), Gaps = 18/334 (5%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA +F+++ + YE++ T V C ++ N+P + F+ L I + N+DVLG
Sbjct: 264 PAKPQFTNLTHPYELNLDRDTVVEECFDE--SNVPKTHFNFIKLDAIQNQEVNSNVDVLG 321
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V +T + +K + +RDIT+VD S S+++ LW ++A F+ V A+K
Sbjct: 322 VIQTINPHFELTSRAGKK-FDRRDITIVDDSGFSISVGLWNQQALDFNLPEGSVAAIKGV 380
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAG 183
RV++F GGK+LS+ SS L NP+IPE + L+GW+ ++ N F + Q G MGG +A
Sbjct: 381 RVTDF-GGKSLSMGFSSTLIPNPEIPEAYALKGWYDSKGRNANFTTLKQEPG-MGGQSAA 438
Query: 184 NL-------LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 236
L + + Q + LG +K D+ SV+ + + N Y AC +++CNKKV++Q
Sbjct: 439 GLTKFIAQRITIARAQAENLGRSEKGDFFSVKAAVSFLKVDNFAYPACSNENCNKKVLEQ 498
Query: 237 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 296
+G +RCEKC+ + +R IL + I D TN +W+TLF ++A+ +LGV A + E+
Sbjct: 499 PDGTWRCEKCDTNNASPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANALMSLKEE 558
Query: 297 HP-----ALKKALFTQYIFRLRAKLEHYNGTKKI 325
P + +Y FR+RA+ + YN +I
Sbjct: 559 DPNEFTKITQSIQMNEYDFRIRAREDTYNDQSRI 592
>gi|357137873|ref|XP_003570523.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Brachypodium distachyon]
Length = 628
Score = 239 bits (610), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 171/559 (30%), Positives = 275/559 (49%), Gaps = 108/559 (19%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGVN A+ A QL+ + G + TI+Q+ Y+++ V G R ++++L + +
Sbjct: 44 VSDGVNTVP-ALFAGQLSALARSGAVRGGTILQLDEYVINNVGGGP---RRIIVVLNMTV 99
Query: 385 IKPGTEIGFKIGNP----QPLNTNTDNSSTQQ-------TPAATNTN-----GSNG-VHN 427
++ +I IGNP + N ++S +Q + AA + N G V
Sbjct: 100 LRAECDI---IGNPTITPETRLPNQNHSGAEQFNGIRQPSVAANSLNTPTMLGHQAPVFQ 156
Query: 428 NVAIPRQASAPVVQTH-------------PIVSLSPYQNKWTIKARVTNKTPIREWNNAR 474
A P AP + H PI SL+PYQ +W IK RVT K IR ++NA+
Sbjct: 157 PTAQPSYRPAPSYKNHGPIAKNEAPARIIPISSLNPYQGRWAIKGRVTAKGDIRRYHNAK 216
Query: 475 GSGKLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINND 533
G GK+F+ DLLD + GEIR T FND +RF++++E KVY +S LKPA K F+ +NN+
Sbjct: 217 GEGKVFNFDLLDSDGGEIRVTCFNDLVDRFYEVVEVGKVYVVSRGNLKPAQKNFNHLNNE 276
Query: 534 YEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVT 593
+E+ + ++V C DE ++PS ++ F P+ + + +D++GV I + +++
Sbjct: 277 WEIVLDNGSSVDLC-PDENSSIPSQRFNFRPISEVEDTPNATILDMIGVVISVSPCTTIQ 335
Query: 594 GKTNQKTYMKRDITLVDQSQASVTMTLWG--------KEAETFDASNKPVIAVKAARVSE 645
K +T KR I L D S SV +T+WG + ET + PV+AVK RV++
Sbjct: 336 KKNGMET-QKRIINLKDMSGRSVDVTMWGEFCNREGSQLQETVERGVFPVLAVKTGRVND 394
Query: 646 FQG---------NLLL------------------------------------------MR 654
F G LL+ +
Sbjct: 395 FGGKSVGTISSSQLLIDPDIVEAHSLRQWFDGGGRDASTQSISRDATPAASRNAIRKTVA 454
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD----CNKKVIDQNNGMYRCEK 710
+I+++ LGM DK D+ +V+ + F+ N Y +CP+++ CNKKV +G++ C+K
Sbjct: 455 QIKEEGLGMEDKPDWVTVKASVIFFKNENFCYTSCPNKEGDRQCNKKVTKGTSGLWYCDK 514
Query: 711 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PAL 765
CN+EF YR +L + I D + + WVT FQ + +LGV+A ++ E+ +
Sbjct: 515 CNREFTECDYRYLLQLQIQDHSGTAWVTAFQEAGQELLGVSASDLSRFKEEEDPRFAETM 574
Query: 766 KKALFTQYIFRLRAKLEHY 784
+ LF Y+ RL+ K E Y
Sbjct: 575 LRCLFQDYLLRLKVKEETY 593
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/346 (32%), Positives = 184/346 (53%), Gaps = 36/346 (10%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K F+ +NN++E+ + ++V C DE ++PS ++ F P+ + + +D++G
Sbjct: 265 PAQKNFNHLNNEWEIVLDNGSSVDLC-PDENSSIPSQRFNFRPISEVEDTPNATILDMIG 323
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG--------KEAETFDASNK 116
V I + +++ K +T KR I L D S SV +T+WG + ET +
Sbjct: 324 VVISVSPCTTIQKKNGMET-QKRIINLKDMSGRSVDVTMWGEFCNREGSQLQETVERGVF 382
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-------STQTNTR-FE 168
PV+AVK RV++F GGK++ SS L ++PDI E H L+ WF STQ+ +R
Sbjct: 383 PVLAVKTGRVNDF-GGKSVGTISSSQLLIDPDIVEAHSLRQWFDGGGRDASTQSISRDAT 441
Query: 169 PVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD 228
P + R A +I+++ LGM DK D+ +V+ + F+ N Y +CP+++
Sbjct: 442 PAASRNAIRKTVA--------QIKEEGLGMEDKPDWVTVKASVIFFKNENFCYTSCPNKE 493
Query: 229 ----CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILG 284
CNKKV +G++ C+KCN+EF YR +L + I D + + WVT FQ + +LG
Sbjct: 494 GDRQCNKKVTKGTSGLWYCDKCNREFTECDYRYLLQLQIQDHSGTAWVTAFQEAGQELLG 553
Query: 285 VTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYNGTKKI 325
V+A ++ E+ + + LF Y+ RL+ K E Y +++
Sbjct: 554 VSASDLSRFKEEEDPRFAETMLRCLFQDYLLRLKVKEETYGDERRV 599
>gi|374108769|gb|AEY97675.1| FAFL008Wp [Ashbya gossypii FDAG1]
Length = 694
Score = 239 bits (610), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 135/407 (33%), Positives = 210/407 (51%), Gaps = 64/407 (15%)
Query: 441 QTHPIVS---LSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFN 497
+T PI + LSPYQN WTIKARV+ K I+ W+N RG GKLF+++ LD SGEIRAT FN
Sbjct: 258 KTKPIFAIEQLSPYQNMWTIKARVSFKGDIKTWHNQRGEGKLFNVNFLDTSGEIRATAFN 317
Query: 498 DECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPS 557
D ++ +++++ KVYY+S ++PA +FS++ + YE+ T V C E ++P
Sbjct: 318 DNALKYFEILQEGKVYYVSKARIQPAKPQFSNLKHPYELQLDRDTVVEECF--EAADVPK 375
Query: 558 VKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVT 617
+ + F+ L I+ + + N+D+LGV + K+ +K + +RDI +VD++ SV
Sbjct: 376 MNFSFIKLDQISSMEANSNVDILGVIQTVNPPFEMIAKSGKK-FNRRDIVIVDETGYSVN 434
Query: 618 MTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL-------------------------- 651
+ LW ++A F+ VIAVK+ RV++F G L
Sbjct: 435 VGLWNEQAVDFNLPEGSVIAVKSVRVTDFGGKSLSMGFSSTLHPNPDIPEAYAIKGWYSS 494
Query: 652 ------------------LMREIQDQ---------QLGMGDKADYCSVRGIIQVFRGSNT 684
MR + D+ LG DK DY +VRG + + N
Sbjct: 495 KGTSTTFHSLKMEGGDRNSMRYVADRITIGKAKDDNLGRSDKGDYFNVRGAVNFLKVDNF 554
Query: 685 TYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEA 744
Y AC ++ C KKVI+Q +G +RCEKC + +R +L I D T+ +W+TLF ++A
Sbjct: 555 AYPACSTEGCQKKVIEQTDGTWRCEKCQVDHPAPKWRYMLTASILDETSQIWITLFNDQA 614
Query: 745 ESILGVTAQEVGESTEDHP-----ALKKALFTQYIFRLRAKLEHYNK 786
E +L + A + E P + +Y FR+RA+ + YN+
Sbjct: 615 EKLLSMDANTLTELKNTDPEKFQKVTQSVQMNEYDFRVRAREDTYNE 661
Score = 202 bits (514), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 110/328 (33%), Positives = 180/328 (54%), Gaps = 11/328 (3%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA +FS++ + YE+ T V C E ++P + + F+ L I+ + + N+D+LG
Sbjct: 342 PAKPQFSNLKHPYELQLDRDTVVEECFE--AADVPKMNFSFIKLDQISSMEANSNVDILG 399
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V + K+ +K + +RDI +VD++ SV + LW ++A F+ VIAVK+
Sbjct: 400 VIQTVNPPFEMIAKSGKK-FNRRDIVIVDETGYSVNVGLWNEQAVDFNLPEGSVIAVKSV 458
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGG-GAA 182
RV++F GGK+LS+ SS L NPDIPE + ++GW+S++ T+T F + G
Sbjct: 459 RVTDF-GGKSLSMGFSSTLHPNPDIPEAYAIKGWYSSKGTSTTFHSLKMEGGDRNSMRYV 517
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
+ + + + +D LG DK DY +VRG + + N Y AC ++ C KKVI+Q +G +R
Sbjct: 518 ADRITIGKAKDDNLGRSDKGDYFNVRGAVNFLKVDNFAYPACSTEGCQKKVIEQTDGTWR 577
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP---- 298
CEKC + +R +L I D T+ +W+TLF ++AE +L + A + E P
Sbjct: 578 CEKCQVDHPAPKWRYMLTASILDETSQIWITLFNDQAEKLLSMDANTLTELKNTDPEKFQ 637
Query: 299 -ALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ +Y FR+RA+ + YN +I
Sbjct: 638 KVTQSVQMNEYDFRVRAREDTYNEETRI 665
>gi|45198511|ref|NP_985540.1| AFL008Wp [Ashbya gossypii ATCC 10895]
gi|44984462|gb|AAS53364.1| AFL008Wp [Ashbya gossypii ATCC 10895]
Length = 694
Score = 239 bits (610), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 135/407 (33%), Positives = 210/407 (51%), Gaps = 64/407 (15%)
Query: 441 QTHPIVS---LSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFN 497
+T PI + LSPYQN WTIKARV+ K I+ W+N RG GKLF+++ LD SGEIRAT FN
Sbjct: 258 KTKPIFAIEQLSPYQNMWTIKARVSFKGDIKTWHNQRGEGKLFNVNFLDTSGEIRATAFN 317
Query: 498 DECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPS 557
D ++ +++++ KVYY+S ++PA +FS++ + YE+ T V C E ++P
Sbjct: 318 DNALKYFEILQEGKVYYVSKARIQPAKPQFSNLKHPYELQLDRDTVVEECF--EAADVPK 375
Query: 558 VKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVT 617
+ + F+ L I+ + + N+D+LGV + K+ +K + +RDI +VD++ SV
Sbjct: 376 MNFSFIKLDQISSMEANSNVDILGVIQTVNPPFEMIAKSGKK-FNRRDIVIVDETGYSVN 434
Query: 618 MTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL-------------------------- 651
+ LW ++A F+ VIAVK+ RV++F G L
Sbjct: 435 VGLWNEQAVDFNLPEGSVIAVKSVRVTDFGGKSLSMGFSSTLHPNPDIPEAYAIKGWYSS 494
Query: 652 ------------------LMREIQDQ---------QLGMGDKADYCSVRGIIQVFRGSNT 684
MR + D+ LG DK DY +VRG + + N
Sbjct: 495 KGTSTTFHSLKMEGGDRNSMRYVADRITIGKAKDDNLGRSDKGDYFNVRGAVNFLKVDNF 554
Query: 685 TYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEA 744
Y AC ++ C KKVI+Q +G +RCEKC + +R +L I D T+ +W+TLF ++A
Sbjct: 555 AYPACSTEGCQKKVIEQTDGTWRCEKCQVDHPAPKWRYMLTASILDETSQIWITLFNDQA 614
Query: 745 ESILGVTAQEVGESTEDHP-----ALKKALFTQYIFRLRAKLEHYNK 786
E +L + A + E P + +Y FR+RA+ + YN+
Sbjct: 615 EKLLSMDANTLTELKNTDPEKFQKVTQSVQMNEYDFRVRAREDTYNE 661
Score = 202 bits (515), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 110/328 (33%), Positives = 180/328 (54%), Gaps = 11/328 (3%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA +FS++ + YE+ T V C E ++P + + F+ L I+ + + N+D+LG
Sbjct: 342 PAKPQFSNLKHPYELQLDRDTVVEECFE--AADVPKMNFSFIKLDQISSMEANSNVDILG 399
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V + K+ +K + +RDI +VD++ SV + LW ++A F+ VIAVK+
Sbjct: 400 VIQTVNPPFEMIAKSGKK-FNRRDIVIVDETGYSVNVGLWNEQAVDFNLPEGSVIAVKSV 458
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGG-GAA 182
RV++F GGK+LS+ SS L NPDIPE + ++GW+S++ T+T F + G
Sbjct: 459 RVTDF-GGKSLSMGFSSTLHPNPDIPEAYAIKGWYSSKGTSTTFHSLKMEGGDRNSMRYV 517
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
+ + + + +D LG DK DY +VRG + + N Y AC ++ C KKVI+Q +G +R
Sbjct: 518 ADRITIGKAKDDNLGRSDKGDYFNVRGAVNFLKVDNFAYPACSTEGCQKKVIEQTDGTWR 577
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP---- 298
CEKC + +R +L I D T+ +W+TLF ++AE +L + A + E P
Sbjct: 578 CEKCQVDHPAPKWRYMLTASILDETSQIWITLFNDQAEKLLSMDANTLTELKNTDPEKFQ 637
Query: 299 -ALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ +Y FR+RA+ + YN +I
Sbjct: 638 KVTQSVQMNEYDFRVRAREDTYNEETRI 665
>gi|367005983|ref|XP_003687723.1| hypothetical protein TPHA_0K01560 [Tetrapisispora phaffii CBS 4417]
gi|357526028|emb|CCE65289.1| hypothetical protein TPHA_0K01560 [Tetrapisispora phaffii CBS 4417]
Length = 616
Score = 239 bits (609), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 139/413 (33%), Positives = 212/413 (51%), Gaps = 67/413 (16%)
Query: 434 QASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRA 493
Q S P+ I LSPYQN WTIKARV+ K I+ W+N +G GKLF+++ LD SGEIRA
Sbjct: 176 QRSRPI---SAIEQLSPYQNIWTIKARVSFKGDIKTWHNQKGEGKLFNVNFLDTSGEIRA 232
Query: 494 TMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVG 553
T FND +F++++++ KVYY+S L+PA +FS++++ YE+S T + C ++
Sbjct: 233 TAFNDMATKFNEILQEGKVYYVSKARLQPAKPQFSNLSHPYELSMDRETIIEECKDE--S 290
Query: 554 NMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ 613
N+P + FV L + + IDVLGV + K +K + +RDIT+VD +
Sbjct: 291 NVPKTHFNFVKLNVVENQEANSTIDVLGVIQTVNPHFELVSKAGKK-FDRRDITIVDDTS 349
Query: 614 ASVTMTLWGKEAETFDASNKPVIAVKAARVSE---------FQGNLLLMREIQD------ 658
S+++ LW ++A F+ ++A+K RVS+ F L+ E+Q+
Sbjct: 350 YSISVGLWNQQATDFNLPEGSIVAIKGVRVSDFGGKSLSMGFSSTLIPNPEVQEAYALKG 409
Query: 659 -----------------------------------------QQLGMGDKADYCSVRGIIQ 677
LG +K DY SV+ I
Sbjct: 410 WYDANGKNSNFTSLKQEGGAVSAQNLIKFISERTTIAKAQADNLGRSEKGDYFSVKASIS 469
Query: 678 VFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWV 737
+ N Y AC S DCNKKV++ +G +RCE+CNK + YR +L + I D T +W+
Sbjct: 470 FLKVDNFAYPACSSDDCNKKVLENPDGTWRCERCNKNQESPEYRYMLTISIIDETGQMWL 529
Query: 738 TLFQNEAESILGVTAQEVGESTE-DHPALKKAL----FTQYIFRLRAKLEHYN 785
TLF ++A+ +LGV A ++ E + D A K Y FR+RA+ ++YN
Sbjct: 530 TLFNDQAKQLLGVDANKLTELRDTDADAFTKTTQDIQMNPYDFRIRAREDNYN 582
Score = 199 bits (506), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 114/334 (34%), Positives = 182/334 (54%), Gaps = 20/334 (5%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA +FS++++ YE+S T + C ++ N+P + FV L + + IDVLG
Sbjct: 261 PAKPQFSNLSHPYELSMDRETIIEECKDE--SNVPKTHFNFVKLNVVENQEANSTIDVLG 318
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V + K +K + +RDIT+VD + S+++ LW ++A F+ ++A+K
Sbjct: 319 VIQTVNPHFELVSKAGKK-FDRRDITIVDDTSYSISVGLWNQQATDFNLPEGSIVAIKGV 377
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAG 183
RVS+F GGK+LS+ SS L NP++ E + L+GW+ N+ F + Q G + +A
Sbjct: 378 RVSDF-GGKSLSMGFSSTLIPNPEVQEAYALKGWYDANGKNSNFTSLKQEGGAV---SAQ 433
Query: 184 NLL-------LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 236
NL+ + + Q LG +K DY SV+ I + N Y AC S DCNKKV++
Sbjct: 434 NLIKFISERTTIAKAQADNLGRSEKGDYFSVKASISFLKVDNFAYPACSSDDCNKKVLEN 493
Query: 237 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE- 295
+G +RCE+CNK + YR +L + I D T +W+TLF ++A+ +LGV A ++ E +
Sbjct: 494 PDGTWRCERCNKNQESPEYRYMLTISIIDETGQMWLTLFNDQAKQLLGVDANKLTELRDT 553
Query: 296 DHPALKKAL----FTQYIFRLRAKLEHYNGTKKI 325
D A K Y FR+RA+ ++YN +I
Sbjct: 554 DADAFTKTTQDIQMNPYDFRIRAREDNYNDQTRI 587
>gi|255715099|ref|XP_002553831.1| KLTH0E08118p [Lachancea thermotolerans]
gi|238935213|emb|CAR23394.1| KLTH0E08118p [Lachancea thermotolerans CBS 6340]
Length = 624
Score = 239 bits (609), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 135/401 (33%), Positives = 210/401 (52%), Gaps = 63/401 (15%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
I LSPYQN WTIKARV+ K I+ W+N RG GKLF+++LLD SGEIRAT F++ ++F+
Sbjct: 193 IEQLSPYQNMWTIKARVSFKGDIKTWSNQRGEGKLFNVNLLDNSGEIRATTFSENVDKFY 252
Query: 505 DMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP 564
+++++ KVYY+S ++P+ +FS++ + YE+ T V C +D ++P + + FV
Sbjct: 253 NLLQEGKVYYVSKARIQPSKPQFSNLAHPYELQLDRDTVVEECFDDV--DVPKMNFSFVK 310
Query: 565 LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE 624
L T+ + +DV+G+ +T K K + +RDI LVD S SV + LWG++
Sbjct: 311 LNTMESQEANSIVDVIGIIRTVNPPFEITSKAG-KRFDRRDIILVDDSGYSVNVGLWGQQ 369
Query: 625 AETFDASNKPVIAVKAARVSEFQGNLLLM--------------------------REIQ- 657
A F+ V+A+K RV++F G L M R Q
Sbjct: 370 ALEFNLPEGSVVAIKGGRVTDFNGKGLSMGFNSTMHPSPEVPEAYAIKGWYDSVGRNAQF 429
Query: 658 ---DQQLGMG-------------------------DKADYCSVRGIIQVFRGSNTTYKAC 689
Q+ G G ++ DY S++ + R N Y AC
Sbjct: 430 HSLKQEPGAGGGNAARFIANRISIAKAQADNLGMSERGDYFSIKAAVSYLRVDNLAYPAC 489
Query: 690 PSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILG 749
+++CNKKVI++ +G +RCEKC+ +R +L V + D T +W+TLF +AE +LG
Sbjct: 490 ANENCNKKVIEEPDGTWRCEKCDANHPEPQFRYMLTVSVLDETGQIWLTLFNEQAEQLLG 549
Query: 750 VTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKLEHYN 785
V A + + E P+ +K QY FR+RA+ ++YN
Sbjct: 550 VDANSMVKYKESDPSKFARITQKIQMNQYDFRVRARADNYN 590
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 182/330 (55%), Gaps = 13/330 (3%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
P+ +FS++ + YE+ T V C +D ++P + + FV L T+ + +DV+G
Sbjct: 270 PSKPQFSNLAHPYELQLDRDTVVEECFDDV--DVPKMNFSFVKLNTMESQEANSIVDVIG 327
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+ +T K K + +RDI LVD S SV + LWG++A F+ V+A+K
Sbjct: 328 IIRTVNPPFEITSKAG-KRFDRRDIILVDDSGYSVNVGLWGQQALEFNLPEGSVVAIKGG 386
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGGGAA- 182
RV++F G K LS+ +S + +P++PE + ++GW+ S N +F + Q G GG AA
Sbjct: 387 RVTDFNG-KGLSMGFNSTMHPSPEVPEAYAIKGWYDSVGRNAQFHSLKQEPGAGGGNAAR 445
Query: 183 --GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGM 240
N + + + Q LGM ++ DY S++ + R N Y AC +++CNKKVI++ +G
Sbjct: 446 FIANRISIAKAQADNLGMSERGDYFSIKAAVSYLRVDNLAYPACANENCNKKVIEEPDGT 505
Query: 241 YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA- 299
+RCEKC+ +R +L V + D T +W+TLF +AE +LGV A + + E P+
Sbjct: 506 WRCEKCDANHPEPQFRYMLTVSVLDETGQIWLTLFNEQAEQLLGVDANSMVKYKESDPSK 565
Query: 300 ----LKKALFTQYIFRLRAKLEHYNGTKKI 325
+K QY FR+RA+ ++YN +I
Sbjct: 566 FARITQKIQMNQYDFRVRARADNYNDETRI 595
>gi|448119751|ref|XP_004203808.1| Piso0_000828 [Millerozyma farinosa CBS 7064]
gi|359384676|emb|CCE78211.1| Piso0_000828 [Millerozyma farinosa CBS 7064]
Length = 629
Score = 238 bits (607), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 138/445 (31%), Positives = 219/445 (49%), Gaps = 78/445 (17%)
Query: 412 QTPAATNTNGSNGVHNNVAIPRQASA-PVVQTHPIVSLSPYQNKWTIKARVTNKTPIREW 470
Q P+ + + SNG P+ AS Q + I LSPYQN WTIKARV+ K IR+W
Sbjct: 159 QPPSNRSVSPSNGT-----APKGASMFQQRQVNAIEQLSPYQNHWTIKARVSYKGDIRKW 213
Query: 471 NNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSI 530
+NARG GKLF+++ LDES EIRAT FND ++F+ +E+ KVYY+S ++ + +FS +
Sbjct: 214 SNARGEGKLFNVNFLDESDEIRATAFNDLADKFYQQLEEGKVYYVSKARIQQSKPQFSHL 273
Query: 531 NNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELS 590
++ YE++ T + C + N+P + + F L I + +DV+GV + +
Sbjct: 274 SHPYELALDRDTVIEECF--DTSNVPKIHFNFTKLNDIENAEANSIVDVIGVLKEVNPVF 331
Query: 591 SVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNL 650
+T K+ K + +R+IT+VD S ++T+ LW A F S VIA K ++ +F G
Sbjct: 332 QITAKSTGKPFDRRNITIVDDSNVAITVGLWNTSAVDFTVSEGSVIAFKGCKIQDFAGRS 391
Query: 651 LLMR---------------------------------------------------EIQDQ 659
L + + Q++
Sbjct: 392 LTLTHAGSMMVNPDTPEAYSLKGWFDNKGVHENFKSLKNENSTTKNAFSSRKSILQAQEE 451
Query: 660 QLGMGDKADYCSVRGIIQVFRGSNTTYKACP----------SQDCNKKVIDQNNGMYRCE 709
LGM +K D+ +++ I F+ N Y AC S CN+KV++Q++G +RCE
Sbjct: 452 NLGMSEKPDFFNIKATINFFKTENFCYPACNNVLDSGSQQLSNTCNRKVVEQSDGTWRCE 511
Query: 710 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV---------GESTE 760
KC+ F YR IL + D + +W+TLF EA+ + G A E+ GE+++
Sbjct: 512 KCDMNFAEPHYRYILNCSVMDSSGQLWITLFDQEAQKLFGTPAGELLKLKEQQMNGENSD 571
Query: 761 DHPALKKALFTQYIFRLRAKLEHYN 785
+ ++ FRL+A+ + YN
Sbjct: 572 FQKIINDVTMKEFNFRLKARQDSYN 596
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 174/337 (51%), Gaps = 24/337 (7%)
Query: 9 KFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCID 68
+FS +++ YE++ T + C + N+P + + F L I + +DV+GV +
Sbjct: 269 QFSHLSHPYELALDRDTVIEECFD--TSNVPKIHFNFTKLNDIENAEANSIVDVIGVLKE 326
Query: 69 AAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSE 128
+ +T K+ K + +R+IT+VD S ++T+ LW A F S VIA K ++ +
Sbjct: 327 VNPVFQITAKSTGKPFDRRNITIVDDSNVAITVGLWNTSAVDFTVSEGSVIAFKGCKIQD 386
Query: 129 FQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAGNLLL 187
F G++L+L+ + + +NPD PE + L+GWF + + F+ + + +
Sbjct: 387 F-AGRSLTLTHAGSMMVNPDTPEAYSLKGWFDNKGVHENFKSLKNENSTTKNAFSSRKSI 445
Query: 188 MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----------SQDCNKKVIDQN 237
+ + Q++ LGM +K D+ +++ I F+ N Y AC S CN+KV++Q+
Sbjct: 446 L-QAQEENLGMSEKPDFFNIKATINFFKTENFCYPACNNVLDSGSQQLSNTCNRKVVEQS 504
Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV------- 290
+G +RCEKC+ F YR IL + D + +W+TLF EA+ + G A E+
Sbjct: 505 DGTWRCEKCDMNFAEPHYRYILNCSVMDSSGQLWITLFDQEAQKLFGTPAGELLKLKEQQ 564
Query: 291 --GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
GE+++ + ++ FRL+A+ + YNG ++
Sbjct: 565 MNGENSDFQKIINDVTMKEFNFRLKARQDSYNGVLRV 601
>gi|405120230|gb|AFR95001.1| damaged DNA binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 613
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 193/336 (57%), Gaps = 29/336 (8%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AMLATQLN + + + ++V++ + V+ VS R +LIIL L ++ P T+ K
Sbjct: 59 AMLATQLNHFVESKQVDKHSLVKVVNFSVNSVS-----GRKLLIILALEVV-PWTDE--K 110
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQT------------ 442
IGNP ++ +S P ++ A P +A P
Sbjct: 111 IGNPVSVDQAKGGASASAQPGGAHSAPLQSTTTAPA-PGRAQVPARNAPSARPGNTKHKG 169
Query: 443 -----HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFN 497
+PI LSPYQN+WTIKARVT K+ IR ++N RG GKLF++ +DE+GEIRAT FN
Sbjct: 170 DLGPLYPIEGLSPYQNRWTIKARVTQKSDIRHYSNQRGDGKLFNVTFMDETGEIRATGFN 229
Query: 498 DECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPS 557
D + F++++E KV+++S + A K+FS++NN+YE+ F T + PC ++ V P
Sbjct: 230 DAVDNFYNLLEVGKVFFVSRARINIAKKQFSNVNNEYEIMFERDTEIEPCADESV---PQ 286
Query: 558 VKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVT 617
VKY F + + E+ D+ DV+GV + EL SVT + K + KR++ LVDQS SV
Sbjct: 287 VKYNFKGIGDLGELQKDDVCDVIGVVREVGELGSVTSRATNKPFAKRELQLVDQSGQSVR 346
Query: 618 MTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM 653
+TLWGK+AETF A ++PVIA K +V +F G L M
Sbjct: 347 LTLWGKQAETFQADDQPVIAFKGVKVGDFGGRSLSM 382
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 117/337 (34%), Positives = 192/337 (56%), Gaps = 23/337 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++NN+YE+ F T + PC ++ V P VKY F + + E+ D+ DV+GV
Sbjct: 255 AKKQFSNVNNEYEIMFERDTEIEPCADESV---PQVKYNFKGIGDLGELQKDDVCDVIGV 311
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ EL SVT + K + KR++ LVDQS SV +TLWGK+AETF A ++PVIA K +
Sbjct: 312 VREVGELGSVTSRATNKPFAKRELQLVDQSGQSVRLTLWGKQAETFQADDQPVIAFKGVK 371
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGA---- 181
V +F GG++LS+ ++ +++NPDIPE H L+GWF + +++ + T +G A
Sbjct: 372 VGDF-GGRSLSMFSNATMTINPDIPEAHSLRGWFDAEGHSK-HFAAYTTASVGDSAINTA 429
Query: 182 ------AGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD-CNKKVI 234
L + +++D+QLGM +K D+ S + + +Y AC + D C KKV+
Sbjct: 430 TSAAARPAELKTIAQVKDEQLGMSEKTDFFSTEATVAFIKKDPFSYPACANPDNCAKKVV 489
Query: 235 DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV---- 290
+ +G + CEKC + ++ +R IL + + D+T W+T F AE I+G++A ++
Sbjct: 490 EDGSGWW-CEKCQRRWDEPIHRYILSMNVMDYTGQFWMTAFNETAEQIMGISANDLMKLK 548
Query: 291 --GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
G + KA Y+F++ AK + +N ++
Sbjct: 549 NEGNDLDYDAHFAKATARTYVFQMMAKQDSFNDQVRV 585
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 82/153 (53%), Gaps = 12/153 (7%)
Query: 640 AARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD-CNKKV 698
AAR +E L + +++D+QLGM +K D+ S + + +Y AC + D C KKV
Sbjct: 433 AARPAE----LKTIAQVKDEQLGMSEKTDFFSTEATVAFIKKDPFSYPACANPDNCAKKV 488
Query: 699 IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV--- 755
++ +G + CEKC + ++ +R IL + + D+T W+T F AE I+G++A ++
Sbjct: 489 VEDGSGWW-CEKCQRRWDEPIHRYILSMNVMDYTGQFWMTAFNETAEQIMGISANDLMKL 547
Query: 756 ---GESTEDHPALKKALFTQYIFRLRAKLEHYN 785
G + KA Y+F++ AK + +N
Sbjct: 548 KNEGNDLDYDAHFAKATARTYVFQMMAKQDSFN 580
>gi|260950665|ref|XP_002619629.1| hypothetical protein CLUG_00788 [Clavispora lusitaniae ATCC 42720]
gi|238847201|gb|EEQ36665.1| hypothetical protein CLUG_00788 [Clavispora lusitaniae ATCC 42720]
Length = 607
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 150/525 (28%), Positives = 251/525 (47%), Gaps = 85/525 (16%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
++ ++ N + + ++I+ I +Y ++ T + +L+I +L + P E +
Sbjct: 62 GLIDSRCNAYLEANGFTRYSIITINQYTIA------KTMKRILLIADLTVDVPKAE---R 112
Query: 395 IGNP-QPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAI-----PRQASAPVVQTHPIVSL 448
I + L+ D + + +NG+ ++++AP +PI SL
Sbjct: 113 IASDVTSLDQYFDQNPAEDIATGVVSNGTPQQTTPQPQAPAAQSKRSAAPERPVNPIESL 172
Query: 449 SPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIE 508
SPYQN WTIK RV+ K+ +R W+NA+G GKLF+++ LDES EIRAT FND ++F+++++
Sbjct: 173 SPYQNNWTIKGRVSYKSDVRTWSNAKGEGKLFNVNFLDESDEIRATAFNDMADKFYNLLQ 232
Query: 509 KDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI 568
+ KVYY++ ++ A KFS +++ YE+S T + C + ++P + F L I
Sbjct: 233 EGKVYYVTKARIQQAKPKFSHLSHPYELSLDKDTEITECF--DTSDVPKINMNFTKLNQI 290
Query: 569 AEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF 628
D IDV+GV + ++ +T K+ K + +R+IT+VD S ++ + LW A F
Sbjct: 291 QSAEKDTIIDVIGVIQNVNDVFQITAKSTGKPFDRRNITIVDDSNFAIDLGLWNATAVDF 350
Query: 629 DASNKPVIAVKAARVSEFQGNLLLMR---------------------------------- 654
+ VIAVK A+V +F G L +
Sbjct: 351 NIPVGSVIAVKGAKVQDFGGRSLSLTPSGSLLSNPDIPEAYQLKGWYDSKGSSENFQSLK 410
Query: 655 --------EIQDQQ---------LGMGDKADYCSVRGIIQVFRGSNTTYKACPSQ----- 692
++D++ LG +K DY S++ I F+ N Y AC ++
Sbjct: 411 TETGSSTDSLKDRKTIALAEQLDLGTKEKPDYFSIKATINYFKTDNFCYPACNNEVNTNG 470
Query: 693 ----DCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL 748
CN+KVI +++G +RCE+CN F YR IL I D T +W T F E + +
Sbjct: 471 RGPSPCNRKVIQESDGSWRCERCNLTFAEPHYRYILNCSIMDHTGQIWATFFDEEGKKLF 530
Query: 749 GVTAQEV--------GESTEDHPALKKALFTQYIFRLRAKLEHYN 785
TA E+ GE+ E + ++ FRLRA+ E +N
Sbjct: 531 NKTAGELMALKEMEEGENHEFMELVSSVTMKEFNFRLRARQESFN 575
Score = 183 bits (464), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 109/338 (32%), Positives = 172/338 (50%), Gaps = 22/338 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A KFS +++ YE+S T + C + ++P + F L I D IDV+GV
Sbjct: 247 AKPKFSHLSHPYELSLDKDTEITECFD--TSDVPKINMNFTKLNQIQSAEKDTIIDVIGV 304
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ ++ +T K+ K + +R+IT+VD S ++ + LW A F+ VIAVK A+
Sbjct: 305 IQNVNDVFQITAKSTGKPFDRRNITIVDDSNFAIDLGLWNATAVDFNIPVGSVIAVKGAK 364
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRTGGMGGGAAGN 184
V +F GG++LSL+ S L NPDIPE ++L+GW+ ++ ++ F+ + TG
Sbjct: 365 VQDF-GGRSLSLTPSGSLLSNPDIPEAYQLKGWYDSKGSSENFQSLKTETGSSTDSLKDR 423
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQ---------DCNKKVID 235
+ Q LG +K DY S++ I F+ N Y AC ++ CN+KVI
Sbjct: 424 KTIALAEQ-LDLGTKEKPDYFSIKATINYFKTDNFCYPACNNEVNTNGRGPSPCNRKVIQ 482
Query: 236 QNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV----- 290
+++G +RCE+CN F YR IL I D T +W T F E + + TA E+
Sbjct: 483 ESDGSWRCERCNLTFAEPHYRYILNCSIMDHTGQIWATFFDEEGKKLFNKTAGELMALKE 542
Query: 291 ---GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
GE+ E + ++ FRLRA+ E +NG ++
Sbjct: 543 MEEGENHEFMELVSSVTMKEFNFRLRARQESFNGNMRV 580
>gi|297800136|ref|XP_002867952.1| hypothetical protein ARALYDRAFT_329623 [Arabidopsis lyrata subsp.
lyrata]
gi|297313788|gb|EFH44211.1| hypothetical protein ARALYDRAFT_329623 [Arabidopsis lyrata subsp.
lyrata]
Length = 801
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 184/607 (30%), Positives = 278/607 (45%), Gaps = 157/607 (25%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG +++ MLAT LND++ GTL +IV++ + V V + R ++I+ EL +
Sbjct: 51 LSDGTHLHQ-GMLATDLNDLVKQGTLQSGSIVRLTHFGVHVVQT-----RRIVIVRELEV 104
Query: 385 IKP------------------GTEIGFKI----------GNPQPLNTNTDNSSTQQTP-- 414
IK G E G K+ G Q N T S+ +P
Sbjct: 105 IKSNSDIIGHPVPGGKHNDQRGAESGIKLNTTGSDQQGLGVRQVNNIETGRSNAAMSPQV 164
Query: 415 -----------AATNTNGSNGVHNNVA----IPRQASA---------------------- 437
+T S V +N + + RQ A
Sbjct: 165 DQRPVFGTSSSVPASTTPSTRVDSNPSAGHGVSRQDHARDPPTSYPRQPQPPPPMYANRG 224
Query: 438 PVVQTH------PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGE 490
PVV+ PI +LSPY +WTIKARVTNK +++++N RG GK+F+ DLLD + GE
Sbjct: 225 PVVRNEAPPRIIPINALSPYSGRWTIKARVTNKAALKQYSNPRGEGKVFNFDLLDADGGE 284
Query: 491 IRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED 550
IR T FN ++F D I +Y IS +L+PA K F+ + NDYE+ +++T+ C E+
Sbjct: 285 IRVTCFNAVADQFFDQIVVGNLYLISRGSLRPAQKNFNHLPNDYEIMLDNASTIKQCYEE 344
Query: 551 EVGNMPSVKYCFVPLKTIAEISPDEN---IDVLGVCIDAAELSSVTGKTNQKTYMKRDIT 607
+ +P ++ F +TI +I EN IDV+G+ + ++T K T KR +
Sbjct: 345 DAA-IPRQQFHF---RTIGDIESMENNSIIDVIGIVSSISPTVTITRKNGTAT-PKRSLQ 399
Query: 608 LVDQSQASVTMTLWGK----EAETF----DASNKPVIAVKAARVSEFQGNLL-------- 651
L D S SV +T+WG E + D+ PV+AVKA R+SEF G +
Sbjct: 400 LKDMSGRSVEVTMWGNFCNAEGQRLQNLCDSGEFPVLAVKAGRISEFNGKTVSTIGSSQL 459
Query: 652 ---------------------------LMRE---------------IQDQQLGMGDKADY 669
L RE I+D++LG +K D+
Sbjct: 460 FIDPDFVEAHKLKDWFEREGKSVPCISLSREFSGSGRVDVRKTISQIKDEKLGTSEKPDW 519
Query: 670 CSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILP 725
+V I + N Y ACP + C+KKV D +G +RCEKC+K + YR IL
Sbjct: 520 ITVSATIIYMKVENFCYTACPIMNGDRPCSKKVTDNGDGTWRCEKCDKSVDECDYRYILQ 579
Query: 726 VMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-------PALKKALFTQYIFRLR 778
+ I D T+ WVT FQ E I+G++A+++ +H ++K FT+YIF+L+
Sbjct: 580 LQIQDHTDLTWVTAFQEAGEEIMGISAKDLYYVKYEHNDEEKFEDIIRKVAFTKYIFKLK 639
Query: 779 AKLEHYN 785
K E ++
Sbjct: 640 VKEETFS 646
Score = 183 bits (465), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 116/343 (33%), Positives = 183/343 (53%), Gaps = 29/343 (8%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN---ID 61
PA K F+ + NDYE+ +++T+ C E++ +P ++ F +TI +I EN ID
Sbjct: 316 PAQKNFNHLPNDYEIMLDNASTIKQCYEEDAA-IPRQQFHF---RTIGDIESMENNSIID 371
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK----EAETF----DA 113
V+G+ + ++T K T KR + L D S SV +T+WG E + D+
Sbjct: 372 VIGIVSSISPTVTITRKNGTAT-PKRSLQLKDMSGRSVEVTMWGNFCNAEGQRLQNLCDS 430
Query: 114 SNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQR 173
PV+AVKA R+SEF G KT+S SS L ++PD E HKL+ WF + + +S
Sbjct: 431 GEFPVLAVKAGRISEFNG-KTVSTIGSSQLFIDPDFVEAHKLKDWFEREGKS-VPCISLS 488
Query: 174 TGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDC 229
G G + +I+D++LG +K D+ +V I + N Y ACP + C
Sbjct: 489 REFSGSGRVDVRKTISQIKDEKLGTSEKPDWITVSATIIYMKVENFCYTACPIMNGDRPC 548
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
+KKV D +G +RCEKC+K + YR IL + I D T+ WVT FQ E I+G++A++
Sbjct: 549 SKKVTDNGDGTWRCEKCDKSVDECDYRYILQLQIQDHTDLTWVTAFQEAGEEIMGISAKD 608
Query: 290 VGESTEDH-------PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ +H ++K FT+YIF+L+ K E ++ +++
Sbjct: 609 LYYVKYEHNDEEKFEDIIRKVAFTKYIFKLKVKEETFSDEQRV 651
>gi|363754309|ref|XP_003647370.1| hypothetical protein Ecym_6168 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891007|gb|AET40553.1| hypothetical protein Ecym_6168 [Eremothecium cymbalariae
DBVPG#7215]
Length = 620
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 131/411 (31%), Positives = 215/411 (52%), Gaps = 64/411 (15%)
Query: 434 QASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRA 493
Q S P+ I LSPYQN WTIKARV+ K I+ W+N RG GKLF+++ LD SGEIRA
Sbjct: 183 QKSKPIF---AIEQLSPYQNMWTIKARVSFKGDIKTWHNQRGEGKLFNVNFLDTSGEIRA 239
Query: 494 TMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVG 553
T FND ++ +++++ KVYY+S ++P+ +FS++ + YE+ T V C E
Sbjct: 240 TAFNDNAMKYFEILQEGKVYYVSKARIQPSKPQFSNLKHPYELQLDRDTVVEECFE--AT 297
Query: 554 NMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ 613
++P + + FV L ++ + + ++DVLG+ +T K+ +K + +RDI +VD +
Sbjct: 298 DVPKMNFSFVKLDHLSSMEANSSVDVLGIIQTVNPPFEMTAKSGKK-FNRRDIVIVDDTG 356
Query: 614 ASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG------------------------- 648
S+++ LW ++A F+ VIAVK+ARV++F G
Sbjct: 357 YSISVGLWNEQAVDFNLPEGSVIAVKSARVTDFAGKSLSMGFSSTLHPNPDIPEAYAIKG 416
Query: 649 ----------------------------NLLLMREIQDQQLGMGDKADYCSVRGIIQVFR 680
N + + +++ LG +K DY +V+G I +
Sbjct: 417 WYNAKGSETNFHSLKTEAGESGAVKFIANRITIGRAKEENLGRSEKGDYFNVKGAINFLK 476
Query: 681 GSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLF 740
N Y AC S+ C KKVI+Q +G +RCEKC + +R +L + I D T+ +W+TLF
Sbjct: 477 VDNFAYPACSSEGCQKKVIEQTDGTWRCEKCQVDHPNPKWRYMLTISILDETSQIWLTLF 536
Query: 741 QNEAESILGVTAQEV-----GESTEDHPALKKALFTQYIFRLRAKLEHYNK 786
++AE +LG+ A + +S + + ++ FR+RA+ + YN+
Sbjct: 537 NDQAEKLLGMDANTLTKLKNTDSEQFQRVTQSVQMNEFDFRIRAREDTYNE 587
Score = 196 bits (497), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 183/328 (55%), Gaps = 11/328 (3%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
P+ +FS++ + YE+ T V C E ++P + + FV L ++ + + ++DVLG
Sbjct: 268 PSKPQFSNLKHPYELQLDRDTVVEECFE--ATDVPKMNFSFVKLDHLSSMEANSSVDVLG 325
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+ +T K+ +K + +RDI +VD + S+++ LW ++A F+ VIAVK+A
Sbjct: 326 IIQTVNPPFEMTAKSGKK-FNRRDIVIVDDTGYSISVGLWNEQAVDFNLPEGSVIAVKSA 384
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGG-GAA 182
RV++F GK+LS+ SS L NPDIPE + ++GW++ + + T F + G G
Sbjct: 385 RVTDF-AGKSLSMGFSSTLHPNPDIPEAYAIKGWYNAKGSETNFHSLKTEAGESGAVKFI 443
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + + +++ LG +K DY +V+G I + N Y AC S+ C KKVI+Q +G +R
Sbjct: 444 ANRITIGRAKEENLGRSEKGDYFNVKGAINFLKVDNFAYPACSSEGCQKKVIEQTDGTWR 503
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-----GESTEDH 297
CEKC + +R +L + I D T+ +W+TLF ++AE +LG+ A + +S +
Sbjct: 504 CEKCQVDHPNPKWRYMLTISILDETSQIWLTLFNDQAEKLLGMDANTLTKLKNTDSEQFQ 563
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ ++ FR+RA+ + YN ++
Sbjct: 564 RVTQSVQMNEFDFRIRAREDTYNEETRV 591
>gi|255723748|ref|XP_002546803.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134694|gb|EER34248.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 620
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 158/552 (28%), Positives = 259/552 (46%), Gaps = 106/552 (19%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
DGV ++ ++ N+ I + ++IVQ+ + + AT + +I L I+
Sbjct: 49 DGV-YSTHGLIDETCNEYIKNNNCQRYSIVQVNSFSIF------ATQKHFFVIKNLEILS 101
Query: 387 PGTEIGFKIGNPQ-PLNT-------------------NTDNSSTQQTPAATNTNGSNGVH 426
P +E K P PL+T ++ +T P AT T
Sbjct: 102 PTSE---KSSVPLIPLDTYFAEHPNEGHLTLTKKSEGDSPAPATPSIPQAT-TASVQPFQ 157
Query: 427 NNVAIP------RQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLF 480
V P A P +T I +SPYQN WTIKARV+ K +R W+N++G GK+F
Sbjct: 158 AQVKQPVPANTAASARGPAPRTLSIELISPYQNNWTIKARVSYKGDLRTWSNSKGEGKVF 217
Query: 481 SIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTH 540
S++ LDES EI+A+ FN+ R + +E+ KVYYIS ++ A KKF+++++ YE++
Sbjct: 218 SVNFLDESDEIKASAFNETAERAYRSLEEGKVYYISKARVQAARKKFNTLSHPYELTLDR 277
Query: 541 STTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKT 600
T + C ++ ++P + + FV L + + + IDV+GV ++T K+ K
Sbjct: 278 DTEITECFDE--SDVPKLNFNFVKLDQVQNLEANSIIDVIGVLKTVLPPFTITAKSTGKE 335
Query: 601 YMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQ--- 657
+ +R+I++VD++ SV + LW A F V+A K +V++F G L + +
Sbjct: 336 FNRRNISIVDETGFSVELGLWNNTAMDFSVEEGTVVAFKGCKVTDFNGKTLSLTQAGSIV 395
Query: 658 -----------------------------------------------DQQLGMGDKADYC 670
++ +G GDK DY
Sbjct: 396 PNPGTPESFTLKGWYDNVGVNEQFKTLKTDKNSGDRIAQRVSIAQALEEHVGTGDKPDYF 455
Query: 671 SVRGIIQVFRGSNTTYKAC-----------PSQDCNKKVIDQN-NGMYRCEKCNKEFNTF 718
SV+ I + N Y AC P Q CNKK+I Q+ +G +RCEKC+ ++
Sbjct: 456 SVKASITFCKPDNFAYPACTNQVQHGDGSRPPQLCNKKLIYQDHDGTWRCEKCDANYDQA 515
Query: 719 TYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFT-----QY 773
YR IL + D T +W+TLF +A+ +L + A E+ E++P A+FT ++
Sbjct: 516 AYRYILSCSVTDSTGQMWLTLFDEQAKKLLDIDATELQRKKEENPDAASAIFTSVLFKEF 575
Query: 774 IFRLRAKLEHYN 785
+FR+RA+ + YN
Sbjct: 576 VFRVRARQDTYN 587
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/333 (31%), Positives = 179/333 (53%), Gaps = 23/333 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A KKF+++++ YE++ T + C ++ ++P + + FV L + + + IDV+GV
Sbjct: 260 ARKKFNTLSHPYELTLDRDTEITECFDE--SDVPKLNFNFVKLDQVQNLEANSIIDVIGV 317
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
++T K+ K + +R+I++VD++ SV + LW A F V+A K +
Sbjct: 318 LKTVLPPFTITAKSTGKEFNRRNISIVDETGFSVELGLWNNTAMDFSVEEGTVVAFKGCK 377
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGGGAAGN 184
V++F GKTLSL+ + + NP PE L+GW+ + N +F+ + +T G
Sbjct: 378 VTDF-NGKTLSLTQAGSIVPNPGTPESFTLKGWYDNVGVNEQFKTL--KTDKNSGDRIAQ 434
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKAC-----------PSQDCNKKV 233
+ + + ++ +G GDK DY SV+ I + N Y AC P Q CNKK+
Sbjct: 435 RVSIAQALEEHVGTGDKPDYFSVKASITFCKPDNFAYPACTNQVQHGDGSRPPQLCNKKL 494
Query: 234 IDQN-NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE 292
I Q+ +G +RCEKC+ ++ YR IL + D T +W+TLF +A+ +L + A E+
Sbjct: 495 IYQDHDGTWRCEKCDANYDQAAYRYILSCSVTDSTGQMWLTLFDEQAKKLLDIDATELQR 554
Query: 293 STEDHPALKKALFT-----QYIFRLRAKLEHYN 320
E++P A+FT +++FR+RA+ + YN
Sbjct: 555 KKEENPDAASAIFTSVLFKEFVFRVRARQDTYN 587
>gi|224074474|ref|XP_002304377.1| predicted protein [Populus trichocarpa]
gi|222841809|gb|EEE79356.1| predicted protein [Populus trichocarpa]
Length = 701
Score = 235 bits (600), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 149/459 (32%), Positives = 228/459 (49%), Gaps = 74/459 (16%)
Query: 397 NPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWT 456
NP+P + S + P + N + R + P + PI +L+PYQ +WT
Sbjct: 62 NPRPEISQPHMGSYSRPPQSAYQQPPPMYSNRGPVARNEAPPRII--PITALNPYQGRWT 119
Query: 457 IKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKDKVYYI 515
IKARVT K +R +NN RG GK+FS DLLD + GEIR T FN ++F+ IE +VY I
Sbjct: 120 IKARVTAKGELRHYNNTRGDGKVFSFDLLDSDGGEIRVTCFNQVADQFYHQIEAGRVYLI 179
Query: 516 SNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDE 575
S LKPA K F+ + +D E+ ++T+ PC ED+ +P ++ F P+ + ++ +
Sbjct: 180 SKGNLKPAQKNFNHLRHDLEIFLESTSTIQPCFEDD-NTIPKQQFHFRPISDVEDMENNS 238
Query: 576 NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK----EAETF--- 628
+DV+GV A +S+ K +T KR + L D S SV +TLWG E +
Sbjct: 239 VVDVIGVVTSIAPTTSLMRKNGTET-QKRTLQLKDMSGRSVELTLWGNFCNAEGQRLQHI 297
Query: 629 -DASNKPVIAVKAARVSEFQG-----------------------------------NLLL 652
D+ PV+AVK+ R+SEF G +L +
Sbjct: 298 CDSGGFPVLAVKSGRISEFSGKAVGTISTSQLFIEPDSPEANRLKEWFDRDGRNTPSLSI 357
Query: 653 MRE---------------IQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQD 693
RE I+D++LG +K D+ +V + + N Y ACP +
Sbjct: 358 SRETSTLGRSDVMKTISQIKDERLGTSEKPDWITVPATVIYVKSDNFCYTACPIMSGERP 417
Query: 694 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 753
CNKKV + +G +RCEKC++ + YR IL I D T WVT FQ E I+G++A+
Sbjct: 418 CNKKVTNNGDGKWRCEKCDQSVDECDYRYILQFQIQDHTGISWVTAFQECGEEIMGISAK 477
Query: 754 EV----GESTEDH---PALKKALFTQYIFRLRAKLEHYN 785
++ E +D L++ LF++Y+F+L+ K E ++
Sbjct: 478 DLHYLKHEQQDDEGFSKVLRQVLFSRYVFKLKVKEETFS 516
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 117/388 (30%), Positives = 199/388 (51%), Gaps = 31/388 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K F+ + +D E+ ++T+ PC ED+ +P ++ F P+ + ++ + +DV+G
Sbjct: 186 PAQKNFNHLRHDLEIFLESTSTIQPCFEDD-NTIPKQQFHFRPISDVEDMENNSVVDVIG 244
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK----EAETF----DASNK 116
V A +S+ K +T KR + L D S SV +TLWG E + D+
Sbjct: 245 VVTSIAPTTSLMRKNGTET-QKRTLQLKDMSGRSVELTLWGNFCNAEGQRLQHICDSGGF 303
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTG 175
PV+AVK+ R+SEF G ++S S + + PD PE ++L+ WF NT +S+ T
Sbjct: 304 PVLAVKSGRISEFSGKAVGTISTSQLF-IEPDSPEANRLKEWFDRDGRNTPSLSISRETS 362
Query: 176 GMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNK 231
+G + + + +I+D++LG +K D+ +V + + N Y ACP + CNK
Sbjct: 363 TLG--RSDVMKTISQIKDERLGTSEKPDWITVPATVIYVKSDNFCYTACPIMSGERPCNK 420
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV- 290
KV + +G +RCEKC++ + YR IL I D T WVT FQ E I+G++A+++
Sbjct: 421 KVTNNGDGKWRCEKCDQSVDECDYRYILQFQIQDHTGISWVTAFQECGEEIMGISAKDLH 480
Query: 291 ---GESTEDH---PALKKALFTQYIFRLRAKLEHYNGTKKI------PDGVNINSFAMLA 338
E +D L++ LF++Y+F+L+ K E ++ +++ + VN +S + L
Sbjct: 481 YLKHEQQDDEGFSKVLRQVLFSRYVFKLKVKEETFSDEQRVKSTVVKSEKVNYSSQSRLL 540
Query: 339 TQLNDIITDGTLSEFTIVQIKRYIVSGV 366
+ + G + F Y GV
Sbjct: 541 LDMMEKFKSGNDTSFACKAESSYHNPGV 568
>gi|357113420|ref|XP_003558501.1| PREDICTED: LOW QUALITY PROTEIN: replication protein A 70 kDa
DNA-binding subunit-like [Brachypodium distachyon]
Length = 645
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 172/577 (29%), Positives = 272/577 (47%), Gaps = 126/577 (21%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+ S AMLA +L D+ G + +IVQ+ Y++S S R ++++L + +
Sbjct: 42 VSDGLTSCS-AMLAERLGDLPRSGVVRCGSIVQLDDYVLSDPS------RRIVVVLNMTV 94
Query: 385 IKP----------------------------GT-EIGFKIGNPQPLNTNTDNSSTQQTPA 415
++ GT + G GNP N + Q + A
Sbjct: 95 LRAECAIIGNPTITSETVSSNQNHLRVEQFNGTRQYGLTAGNPNLTRPNGNVPVFQPSMA 154
Query: 416 A------TNTNGSNGVHNNVAIPRQASAPVVQTH-------------PIVSLSPYQNKWT 456
A T +G A P AP + H PI +L+PYQ +W
Sbjct: 155 ANTLNTPTRLSGQTPAFQPTAQPSYRPAPSYKNHGAIAKNEAPARIIPISTLNPYQGRWA 214
Query: 457 IKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKDKVYYI 515
IK RVT K IR ++NA+G GK+FS DLLD + GEIR T FN +RF++++E KVY +
Sbjct: 215 IKGRVTAKGDIRRYHNAKGEGKVFSFDLLDSDGGEIRVTCFNALLDRFYEVVEVGKVYVV 274
Query: 516 SNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDE 575
S LKPA K ++ +NN +E++ + ++V C DE ++PS ++ F P+ + + +
Sbjct: 275 SRGNLKPAQKNYNHLNNXWEITLDNGSSVDLC-LDENSSIPSQRFNFRPISEVEDTANTA 333
Query: 576 NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG--------KEAET 627
+D++GV I + +++ K +T KR I L D S SV +T+WG + E
Sbjct: 334 ILDIIGVVISVSPCTTLQKKNGMET-QKRVINLKDMSGRSVDVTIWGEFCNREGSQLQEI 392
Query: 628 FDASNKPVIAVKAARVSEFQG---------NLLL-------------------------- 652
+ PV+AVK RV++F G LL+
Sbjct: 393 VECGGFPVLAVKTGRVNDFGGKSVGTISSSQLLIDPDIAEAHSLRQWFDSGGRDASTQSI 452
Query: 653 ----------------MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD--- 693
+ +I+D+ LGMGDK D+ +V+ I F+ N Y ACP+++
Sbjct: 453 STDVIPAASRNDIRMTIAQIKDEGLGMGDKPDWVTVKASIIFFKNENFCYTACPNKEGDR 512
Query: 694 -CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA 752
CNKKV +G++ C+KCN+EF YR +L + I D + + WVT FQ + +LG +A
Sbjct: 513 QCNKKVTKGTSGLWFCDKCNREFTECDYRYLLQLQIQDHSGTTWVTAFQESGQDLLGCSA 572
Query: 753 QEVGESTEDH-----PALKKALFTQYIFRLRAKLEHY 784
Q++ E+ + + LF +Y+ RL+ K E Y
Sbjct: 573 QDLNRFKEEEDPRFAETMLQCLFQEYLLRLKIKEETY 609
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 112/346 (32%), Positives = 187/346 (54%), Gaps = 36/346 (10%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K ++ +NN +E++ + ++V C DE ++PS ++ F P+ + + + +D++G
Sbjct: 281 PAQKNYNHLNNXWEITLDNGSSVDLC-LDENSSIPSQRFNFRPISEVEDTANTAILDIIG 339
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG--------KEAETFDASNK 116
V I + +++ K +T KR I L D S SV +T+WG + E +
Sbjct: 340 VVISVSPCTTLQKKNGMET-QKRVINLKDMSGRSVDVTIWGEFCNREGSQLQEIVECGGF 398
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-------STQT-NTRFE 168
PV+AVK RV++F GGK++ SS L ++PDI E H L+ WF STQ+ +T
Sbjct: 399 PVLAVKTGRVNDF-GGKSVGTISSSQLLIDPDIAEAHSLRQWFDSGGRDASTQSISTDVI 457
Query: 169 PVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD 228
P + R + + +I+D+ LGMGDK D+ +V+ I F+ N Y ACP+++
Sbjct: 458 PAASRNDIR--------MTIAQIKDEGLGMGDKPDWVTVKASIIFFKNENFCYTACPNKE 509
Query: 229 ----CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILG 284
CNKKV +G++ C+KCN+EF YR +L + I D + + WVT FQ + +LG
Sbjct: 510 GDRQCNKKVTKGTSGLWFCDKCNREFTECDYRYLLQLQIQDHSGTTWVTAFQESGQDLLG 569
Query: 285 VTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+AQ++ E+ + + LF +Y+ RL+ K E Y +++
Sbjct: 570 CSAQDLNRFKEEEDPRFAETMLQCLFQEYLLRLKIKEETYGDERRV 615
>gi|323306166|gb|EGA59898.1| Rfa1p [Saccharomyces cerevisiae FostersB]
Length = 455
Score = 235 bits (599), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 138/418 (33%), Positives = 216/418 (51%), Gaps = 69/418 (16%)
Query: 431 IPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE 490
+ RQ + P+ I LSPYQN WTIKARV+ K I+ W+N RG GKLF+++ LD SGE
Sbjct: 10 LTRQKTRPIF---AIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGE 66
Query: 491 IRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED 550
IRAT FND +F++++++ KVYY+S L+PA +F+++ + YE++ T + C ++
Sbjct: 67 IRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFDE 126
Query: 551 EVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVD 610
N+P + F+ L I + N+DVLG+ +T + +K + +RDIT+VD
Sbjct: 127 --SNVPKTHFNFIKLDAIQNQEVNSNVDVLGIIQTINPHFELTSRAGKK-FDRRDITIVD 183
Query: 611 QSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM---------REIQD--- 658
S S+++ LW ++A F+ V A+K RV++F G L M EI +
Sbjct: 184 DSGFSISVGLWNQQALDFNLPEGSVAAIKGVRVTDFGGKSLSMGFSSTLIPNPEIPEAYA 243
Query: 659 ------------------QQLGMG----------------------------DKADYCSV 672
Q+ GMG +K D+ SV
Sbjct: 244 LKGWYDSKGRNANFITLKQEPGMGGQSAASLTKFIAQRITIARAQAENLGRSEKGDFFSV 303
Query: 673 RGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWT 732
+ I + N Y AC +++CNKKV++Q +G +RCEKC+ +R IL + I D T
Sbjct: 304 KAAISFLKVDNFAYPACSNENCNKKVLEQPDGTWRCEKCDTNNARPNWRYILTISIIDET 363
Query: 733 NSVWVTLFQNEAESILGVTAQEVGESTEDHP-----ALKKALFTQYIFRLRAKLEHYN 785
N +W+TLF ++A+ +LGV A + E+ P + +Y FR+RA+ + YN
Sbjct: 364 NQLWLTLFDDQAKQLLGVDANTLMSLKEEDPNEFTKITQSIQMNEYDFRIRAREDTYN 421
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 185/334 (55%), Gaps = 18/334 (5%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA +F+++ + YE++ T + C ++ N+P + F+ L I + N+DVLG
Sbjct: 98 PAKPQFTNLTHPYELNLDRDTVIEECFDE--SNVPKTHFNFIKLDAIQNQEVNSNVDVLG 155
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+ +T + +K + +RDIT+VD S S+++ LW ++A F+ V A+K
Sbjct: 156 IIQTINPHFELTSRAGKK-FDRRDITIVDDSGFSISVGLWNQQALDFNLPEGSVAAIKGV 214
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAG 183
RV++F GGK+LS+ SS L NP+IPE + L+GW+ ++ N F + Q G MGG +A
Sbjct: 215 RVTDF-GGKSLSMGFSSTLIPNPEIPEAYALKGWYDSKGRNANFITLKQEPG-MGGQSAA 272
Query: 184 NL-------LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 236
+L + + Q + LG +K D+ SV+ I + N Y AC +++CNKKV++Q
Sbjct: 273 SLTKFIAQRITIARAQAENLGRSEKGDFFSVKAAISFLKVDNFAYPACSNENCNKKVLEQ 332
Query: 237 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 296
+G +RCEKC+ +R IL + I D TN +W+TLF ++A+ +LGV A + E+
Sbjct: 333 PDGTWRCEKCDTNNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEE 392
Query: 297 HP-----ALKKALFTQYIFRLRAKLEHYNGTKKI 325
P + +Y FR+RA+ + YN +I
Sbjct: 393 DPNEFTKITQSIQMNEYDFRIRAREDTYNDQSRI 426
>gi|207347969|gb|EDZ73967.1| YAR007Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256270812|gb|EEU05961.1| Rfa1p [Saccharomyces cerevisiae JAY291]
gi|259144715|emb|CAY77656.1| Rfa1p [Saccharomyces cerevisiae EC1118]
gi|323310280|gb|EGA63470.1| Rfa1p [Saccharomyces cerevisiae FostersO]
gi|323334809|gb|EGA76181.1| Rfa1p [Saccharomyces cerevisiae AWRI796]
gi|323349907|gb|EGA84118.1| Rfa1p [Saccharomyces cerevisiae Lalvin QA23]
gi|323356339|gb|EGA88141.1| Rfa1p [Saccharomyces cerevisiae VL3]
gi|349576254|dbj|GAA21426.1| K7_Rfa1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 621
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 148/456 (32%), Positives = 232/456 (50%), Gaps = 87/456 (19%)
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKW 455
G P L++N++ ++ ++ A N N Q + P+ I LSPYQN W
Sbjct: 153 GVPDMLHSNSNLNANERKFANENPNS------------QKTRPIF---AIEQLSPYQNVW 197
Query: 456 TIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYI 515
TIKARV+ K I+ W+N RG GKLF+++ LD SGEIRAT FND +F++++++ KVYY+
Sbjct: 198 TIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEIRATAFNDFATKFNEILQEGKVYYV 257
Query: 516 SNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDE 575
S L+PA +F+++ + YE++ T + C ++ N+P + F+ L I +
Sbjct: 258 SKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFDE--SNVPKTHFNFIKLDAIQNQEVNS 315
Query: 576 NIDVLGV--CIDAA-ELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN 632
N+DVLG+ I+ EL+S G K + +RDIT+VD S S+++ LW ++A F+
Sbjct: 316 NVDVLGIIQTINPHFELTSRAG----KKFDRRDITIVDDSGFSISVGLWNQQALDFNLPE 371
Query: 633 KPVIAVKAARVSEFQGNLLLMR---------EIQD---------------------QQLG 662
V A+K RV++F G L M EI + Q+ G
Sbjct: 372 GSVAAIKGVRVTDFGGKSLSMGFSSTLIPNPEIPEAYALKGWYDSKGRNANFITLKQEPG 431
Query: 663 MG----------------------------DKADYCSVRGIIQVFRGSNTTYKACPSQDC 694
MG +K D+ SV+ I + N Y AC +++C
Sbjct: 432 MGGQSAASLTKFIAQRITIARAQAENLGRSEKGDFFSVKAAISFLKVDNFAYPACSNENC 491
Query: 695 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 754
NKKV++Q +G +RCEKC+ +R IL + I D TN +W+TLF ++A+ +LGV A
Sbjct: 492 NKKVLEQPDGTWRCEKCDTNNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANT 551
Query: 755 VGESTEDHP-----ALKKALFTQYIFRLRAKLEHYN 785
+ E+ P + +Y FR+RA+ + YN
Sbjct: 552 LMSLKEEDPNEFTKITQSIQMNEYDFRIRAREDTYN 587
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 185/334 (55%), Gaps = 18/334 (5%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA +F+++ + YE++ T + C ++ N+P + F+ L I + N+DVLG
Sbjct: 264 PAKPQFTNLTHPYELNLDRDTVIEECFDE--SNVPKTHFNFIKLDAIQNQEVNSNVDVLG 321
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+ +T + +K + +RDIT+VD S S+++ LW ++A F+ V A+K
Sbjct: 322 IIQTINPHFELTSRAGKK-FDRRDITIVDDSGFSISVGLWNQQALDFNLPEGSVAAIKGV 380
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAG 183
RV++F GGK+LS+ SS L NP+IPE + L+GW+ ++ N F + Q G MGG +A
Sbjct: 381 RVTDF-GGKSLSMGFSSTLIPNPEIPEAYALKGWYDSKGRNANFITLKQEPG-MGGQSAA 438
Query: 184 NL-------LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 236
+L + + Q + LG +K D+ SV+ I + N Y AC +++CNKKV++Q
Sbjct: 439 SLTKFIAQRITIARAQAENLGRSEKGDFFSVKAAISFLKVDNFAYPACSNENCNKKVLEQ 498
Query: 237 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 296
+G +RCEKC+ +R IL + I D TN +W+TLF ++A+ +LGV A + E+
Sbjct: 499 PDGTWRCEKCDTNNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEE 558
Query: 297 HP-----ALKKALFTQYIFRLRAKLEHYNGTKKI 325
P + +Y FR+RA+ + YN +I
Sbjct: 559 DPNEFTKITQSIQMNEYDFRIRAREDTYNDQSRI 592
>gi|6319321|ref|NP_009404.1| Rfa1p [Saccharomyces cerevisiae S288c]
gi|132473|sp|P22336.1|RFA1_YEAST RecName: Full=Replication factor A protein 1; Short=RF-A protein 1;
AltName: Full=DNA-binding protein BUF2; AltName:
Full=Replication protein A 69 kDa DNA-binding subunit;
AltName: Full=Single-stranded DNA-binding protein
gi|4312|emb|CAA42420.1| replication factor-A protein 1 [Saccharomyces cerevisiae]
gi|172466|gb|AAA34994.1| single stranded DNA binding protein [Saccharomyces cerevisiae]
gi|349752|gb|AAC04960.1| Rfa1p: Subunit of replication factor RF-A [Saccharomyces
cerevisiae]
gi|410541|gb|AAB27889.1| BUF2 [Saccharomyces cerevisiae]
gi|151941394|gb|EDN59765.1| RF-A [Saccharomyces cerevisiae YJM789]
gi|285810203|tpg|DAA06989.1| TPA: Rfa1p [Saccharomyces cerevisiae S288c]
gi|392301278|gb|EIW12366.1| Rfa1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 621
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 148/456 (32%), Positives = 232/456 (50%), Gaps = 87/456 (19%)
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKW 455
G P L++N++ ++ ++ A N N Q + P+ I LSPYQN W
Sbjct: 153 GVPDMLHSNSNLNANERKFANENPNS------------QKTRPIF---AIEQLSPYQNVW 197
Query: 456 TIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYI 515
TIKARV+ K I+ W+N RG GKLF+++ LD SGEIRAT FND +F++++++ KVYY+
Sbjct: 198 TIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEIRATAFNDFATKFNEILQEGKVYYV 257
Query: 516 SNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDE 575
S L+PA +F+++ + YE++ T + C ++ N+P + F+ L I +
Sbjct: 258 SKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFDE--SNVPKTHFNFIKLDAIQNQEVNS 315
Query: 576 NIDVLGV--CIDAA-ELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN 632
N+DVLG+ I+ EL+S G K + +RDIT+VD S S+++ LW ++A F+
Sbjct: 316 NVDVLGIIQTINPHFELTSRAG----KKFDRRDITIVDDSGFSISVGLWNQQALDFNLPE 371
Query: 633 KPVIAVKAARVSEFQGNLLLMR---------EIQD---------------------QQLG 662
V A+K RV++F G L M EI + Q+ G
Sbjct: 372 GSVAAIKGVRVTDFGGKSLSMGFSSTLIPNPEIPEAYALKGWYDSKGRNANFITLKQEPG 431
Query: 663 MG----------------------------DKADYCSVRGIIQVFRGSNTTYKACPSQDC 694
MG +K D+ SV+ I + N Y AC +++C
Sbjct: 432 MGGQSAASLTKFIAQRITIARAQAENLGRSEKGDFFSVKAAISFLKVDNFAYPACSNENC 491
Query: 695 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 754
NKKV++Q +G +RCEKC+ +R IL + I D TN +W+TLF ++A+ +LGV A
Sbjct: 492 NKKVLEQPDGTWRCEKCDTNNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANT 551
Query: 755 VGESTEDHP-----ALKKALFTQYIFRLRAKLEHYN 785
+ E+ P + +Y FR+RA+ + YN
Sbjct: 552 LMSLKEEDPNEFTKITQSIQMNEYDFRIRAREDTYN 587
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 185/334 (55%), Gaps = 18/334 (5%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA +F+++ + YE++ T + C ++ N+P + F+ L I + N+DVLG
Sbjct: 264 PAKPQFTNLTHPYELNLDRDTVIEECFDE--SNVPKTHFNFIKLDAIQNQEVNSNVDVLG 321
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+ +T + +K + +RDIT+VD S S+++ LW ++A F+ V A+K
Sbjct: 322 IIQTINPHFELTSRAGKK-FDRRDITIVDDSGFSISVGLWNQQALDFNLPEGSVAAIKGV 380
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAG 183
RV++F GGK+LS+ SS L NP+IPE + L+GW+ ++ N F + Q G MGG +A
Sbjct: 381 RVTDF-GGKSLSMGFSSTLIPNPEIPEAYALKGWYDSKGRNANFITLKQEPG-MGGQSAA 438
Query: 184 NL-------LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 236
+L + + Q + LG +K D+ SV+ I + N Y AC +++CNKKV++Q
Sbjct: 439 SLTKFIAQRITIARAQAENLGRSEKGDFFSVKAAISFLKVDNFAYPACSNENCNKKVLEQ 498
Query: 237 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 296
+G +RCEKC+ +R IL + I D TN +W+TLF ++A+ +LGV A + E+
Sbjct: 499 PDGTWRCEKCDTNNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEE 558
Query: 297 HP-----ALKKALFTQYIFRLRAKLEHYNGTKKI 325
P + +Y FR+RA+ + YN +I
Sbjct: 559 DPNEFTKITQSIQMNEYDFRIRAREDTYNDQSRI 592
>gi|307109191|gb|EFN57429.1| hypothetical protein CHLNCDRAFT_30347 [Chlorella variabilis]
Length = 721
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 163/552 (29%), Positives = 251/552 (45%), Gaps = 114/552 (20%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLATQL ++I TL E +IV + YI S N+ V+I+L L +++ + KI
Sbjct: 57 MLATQLAELIHTNTLKENSIVTLHDYI-----SNQVQNKKVVIVLNLEVVQSDAQ---KI 108
Query: 396 GN-------------PQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAI----------- 431
G+ P N P G +N
Sbjct: 109 GDPQMYDKVHAGGGAPPAQNGAGPPPQQYGGPPPQQYGGPPQAYNAGGGFGGPPPGNQPG 168
Query: 432 -------PRQASAPVVQTH--PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSI 482
P Q + +H PI +L+ YQN+WTIKARVTNK+ IR + NARG GK FS
Sbjct: 169 SAYGGPPPNQVARNEAPSHIMPINALNSYQNRWTIKARVTNKSDIRRYTNARGEGKFFSF 228
Query: 483 DLLD-ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHS 541
DLLD + GEIR +ND+C+R+ +I++ KVY IS +L+ F+ + YE+ +S
Sbjct: 229 DLLDAQGGEIRVVCWNDQCDRWEPVIDQGKVYLISKASLRNKRGNFNQTRHQYEIHLENS 288
Query: 542 TTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTY 601
+ V CNE++ ++P + + F + + + P ++DV+GV + + ++T + T
Sbjct: 289 SVVEACNEED--DIPHIYFNFCKIAAVEDTPPGNSLDVIGVVENVMDWVTITKRDGTDT- 345
Query: 602 MKRDITLVDQSQASVTMTLWGKEAE--------TFDASNKPVIAVKAARVSEFQGNLL-- 651
KR +T+ D S S+ +TLWGK A F P++A+K+ARV +F G L
Sbjct: 346 QKRSLTIRDDSNRSIELTLWGKYANEPGDHLQAAFQNGVHPIVAIKSARVGDFNGKTLST 405
Query: 652 -----------------------------------------------LMREIQDQQLGMG 664
+ +I+D+ LG+G
Sbjct: 406 VASSTVMVDPLDVPEAVQLRQWYDSGGATMVAEALSRPSGGRNDRRITLAQIKDEGLGLG 465
Query: 665 DKADYCSVRGIIQVFRGSNTTYKACPS-----QDCNKKVIDQNNGMYRCEKCNKEFNTFT 719
+K D+ V G I R N Y ACP+ + CNKK+ D +G + CE+CN F
Sbjct: 466 EKPDWVLVSGAITFLRNENMFYAACPNKLAEGRQCNKKLQDNQDGTWSCERCNGNFEP-E 524
Query: 720 YRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-----DHPALKKAL-FTQY 773
YR +L + D T WVT FQ + I+G +A ++ + + D + + L F Y
Sbjct: 525 YRYMLNFQLSDHTGEAWVTAFQEQGLDIMGRSAADLKDMQQTLDEGDFSSYMQDLNFRHY 584
Query: 774 IFRLRAKLEHYN 785
+ +L+ E YN
Sbjct: 585 LMKLKVTNEVYN 596
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/345 (30%), Positives = 176/345 (51%), Gaps = 30/345 (8%)
Query: 3 AAPANKK--FSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI 60
A+ NK+ F+ + YE+ +S+ V CNE++ ++P + + F + + + P ++
Sbjct: 265 ASLRNKRGNFNQTRHQYEIHLENSSVVEACNEED--DIPHIYFNFCKIAAVEDTPPGNSL 322
Query: 61 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE--------TFD 112
DV+GV + + ++T + T KR +T+ D S S+ +TLWGK A F
Sbjct: 323 DVIGVVENVMDWVTITKRDGTDT-QKRSLTIRDDSNRSIELTLWGKYANEPGDHLQAAFQ 381
Query: 113 ASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNP-DIPECHKLQGWFSTQTNTRFEPVS 171
P++A+K+ARV +F G KTLS SS + ++P D+PE +L+ W+ + T
Sbjct: 382 NGVHPIVAIKSARVGDFNG-KTLSTVASSTVMVDPLDVPEAVQLRQWYDSGGATMVAEAL 440
Query: 172 QRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS----- 226
R G G + + +I+D+ LG+G+K D+ V G I R N Y ACP+
Sbjct: 441 SRPSG---GRNDRRITLAQIKDEGLGLGEKPDWVLVSGAITFLRNENMFYAACPNKLAEG 497
Query: 227 QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVT 286
+ CNKK+ D +G + CE+CN F YR +L + D T WVT FQ + I+G +
Sbjct: 498 RQCNKKLQDNQDGTWSCERCNGNFEP-EYRYMLNFQLSDHTGEAWVTAFQEQGLDIMGRS 556
Query: 287 AQEVGESTE-----DHPALKKAL-FTQYIFRLRAKLEHYNGTKKI 325
A ++ + + D + + L F Y+ +L+ E YN K+
Sbjct: 557 AADLKDMQQTLDEGDFSSYMQDLNFRHYLMKLKVTNEVYNDETKL 601
>gi|190406650|gb|EDV09917.1| RF-A [Saccharomyces cerevisiae RM11-1a]
Length = 621
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 148/456 (32%), Positives = 232/456 (50%), Gaps = 87/456 (19%)
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKW 455
G P L++N++ ++ ++ A N N Q + P+ I LSPYQN W
Sbjct: 153 GVPDMLHSNSNLNANERKFANENPNS------------QKTRPIF---AIEQLSPYQNVW 197
Query: 456 TIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYI 515
TIKARV+ K I+ W+N RG GKLF+++ LD SGEIRAT FND +F++++++ KVYY+
Sbjct: 198 TIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEIRATAFNDFATKFNEILQEGKVYYV 257
Query: 516 SNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDE 575
S L+PA +F+++ + YE++ T + C ++ N+P + F+ L I +
Sbjct: 258 SKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFDE--SNVPKTHFNFIKLDAIQNQEVNS 315
Query: 576 NIDVLGV--CIDAA-ELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN 632
N+DVLG+ I+ EL+S G K + +RDIT+VD S S+++ LW ++A F+
Sbjct: 316 NVDVLGIIQTINPHFELTSRAG----KKFDRRDITIVDDSGFSISVGLWNQQALDFNLPE 371
Query: 633 KPVIAVKAARVSEFQGNLLLMR---------EIQD---------------------QQLG 662
V A+K RV++F G L M EI + Q+ G
Sbjct: 372 GSVAAIKGVRVTDFGGKSLSMGFSSTLIPNPEIPEAYALKGWYDSKGRNANFITLKQEPG 431
Query: 663 MG----------------------------DKADYCSVRGIIQVFRGSNTTYKACPSQDC 694
MG +K D+ SV+ I + N Y AC +++C
Sbjct: 432 MGGQSAASLTKFIAQRITITRAQAENLGRSEKGDFFSVKAAISFLKVDNFAYPACSNENC 491
Query: 695 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 754
NKKV++Q +G +RCEKC+ +R IL + I D TN +W+TLF ++A+ +LGV A
Sbjct: 492 NKKVLEQPDGTWRCEKCDTNNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANT 551
Query: 755 VGESTEDHP-----ALKKALFTQYIFRLRAKLEHYN 785
+ E+ P + +Y FR+RA+ + YN
Sbjct: 552 LMSLKEEDPNEFTKITQSIQMNEYDFRIRAREDTYN 587
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 185/334 (55%), Gaps = 18/334 (5%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA +F+++ + YE++ T + C ++ N+P + F+ L I + N+DVLG
Sbjct: 264 PAKPQFTNLTHPYELNLDRDTVIEECFDE--SNVPKTHFNFIKLDAIQNQEVNSNVDVLG 321
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+ +T + +K + +RDIT+VD S S+++ LW ++A F+ V A+K
Sbjct: 322 IIQTINPHFELTSRAGKK-FDRRDITIVDDSGFSISVGLWNQQALDFNLPEGSVAAIKGV 380
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAG 183
RV++F GGK+LS+ SS L NP+IPE + L+GW+ ++ N F + Q G MGG +A
Sbjct: 381 RVTDF-GGKSLSMGFSSTLIPNPEIPEAYALKGWYDSKGRNANFITLKQEPG-MGGQSAA 438
Query: 184 NL-------LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 236
+L + + Q + LG +K D+ SV+ I + N Y AC +++CNKKV++Q
Sbjct: 439 SLTKFIAQRITITRAQAENLGRSEKGDFFSVKAAISFLKVDNFAYPACSNENCNKKVLEQ 498
Query: 237 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 296
+G +RCEKC+ +R IL + I D TN +W+TLF ++A+ +LGV A + E+
Sbjct: 499 PDGTWRCEKCDTNNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEE 558
Query: 297 HP-----ALKKALFTQYIFRLRAKLEHYNGTKKI 325
P + +Y FR+RA+ + YN +I
Sbjct: 559 DPNEFTKITQSIQMNEYDFRIRAREDTYNDQSRI 592
>gi|365767235|gb|EHN08720.1| Rfa1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 621
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 148/456 (32%), Positives = 232/456 (50%), Gaps = 87/456 (19%)
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKW 455
G P L++N++ ++ ++ A N N Q + P+ I LSPYQN W
Sbjct: 153 GVPDMLHSNSNLNANERKFANENPNS------------QKTRPIF---AIEQLSPYQNVW 197
Query: 456 TIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYI 515
TIKARV+ K I+ W+N RG GKLF+++ LD SGEIRAT FND +F++++++ KVYY+
Sbjct: 198 TIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEIRATAFNDFATKFNEILQEGKVYYV 257
Query: 516 SNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDE 575
S L+PA +F+++ + YE++ T + C ++ N+P + F+ L I +
Sbjct: 258 SKAKLQPAKPQFTNLXHPYELNLDRDTVIEECFDE--SNVPKTHFNFIKLDAIQNQEVNS 315
Query: 576 NIDVLGV--CIDAA-ELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN 632
N+DVLG+ I+ EL+S G K + +RDIT+VD S S+++ LW ++A F+
Sbjct: 316 NVDVLGIIQTINPHFELTSRAG----KKFDRRDITIVDDSGFSISVGLWNQQALDFNLPE 371
Query: 633 KPVIAVKAARVSEFQGNLLLMR---------EIQD---------------------QQLG 662
V A+K RV++F G L M EI + Q+ G
Sbjct: 372 GSVAAIKGVRVTDFGGKSLSMGFSSTLIPNPEIPEAYALKGWYDSKGRNANFITLKQEPG 431
Query: 663 MG----------------------------DKADYCSVRGIIQVFRGSNTTYKACPSQDC 694
MG +K D+ SV+ I + N Y AC +++C
Sbjct: 432 MGGQSAASLTKFIAQRITIARAQAENLGRSEKGDFFSVKAAISFLKVDNFAYPACSNENC 491
Query: 695 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 754
NKKV++Q +G +RCEKC+ +R IL + I D TN +W+TLF ++A+ +LGV A
Sbjct: 492 NKKVLEQPDGTWRCEKCDTNNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANT 551
Query: 755 VGESTEDHP-----ALKKALFTQYIFRLRAKLEHYN 785
+ E+ P + +Y FR+RA+ + YN
Sbjct: 552 LMSLKEEDPNEFTKITQSIQMNEYDFRIRAREDTYN 587
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 185/334 (55%), Gaps = 18/334 (5%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA +F+++ + YE++ T + C ++ N+P + F+ L I + N+DVLG
Sbjct: 264 PAKPQFTNLXHPYELNLDRDTVIEECFDE--SNVPKTHFNFIKLDAIQNQEVNSNVDVLG 321
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+ +T + +K + +RDIT+VD S S+++ LW ++A F+ V A+K
Sbjct: 322 IIQTINPHFELTSRAGKK-FDRRDITIVDDSGFSISVGLWNQQALDFNLPEGSVAAIKGV 380
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAG 183
RV++F GGK+LS+ SS L NP+IPE + L+GW+ ++ N F + Q G MGG +A
Sbjct: 381 RVTDF-GGKSLSMGFSSTLIPNPEIPEAYALKGWYDSKGRNANFITLKQEPG-MGGQSAA 438
Query: 184 NL-------LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 236
+L + + Q + LG +K D+ SV+ I + N Y AC +++CNKKV++Q
Sbjct: 439 SLTKFIAQRITIARAQAENLGRSEKGDFFSVKAAISFLKVDNFAYPACSNENCNKKVLEQ 498
Query: 237 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 296
+G +RCEKC+ +R IL + I D TN +W+TLF ++A+ +LGV A + E+
Sbjct: 499 PDGTWRCEKCDTNNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEE 558
Query: 297 HP-----ALKKALFTQYIFRLRAKLEHYNGTKKI 325
P + +Y FR+RA+ + YN +I
Sbjct: 559 DPNEFTKITQSIQMNEYDFRIRAREDTYNDQSRI 592
>gi|150863697|ref|XP_001382257.2| DNA replication factor A [Scheffersomyces stipitis CBS 6054]
gi|149384953|gb|ABN64228.2| DNA replication factor A [Scheffersomyces stipitis CBS 6054]
Length = 616
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 137/408 (33%), Positives = 208/408 (50%), Gaps = 68/408 (16%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI +LSPYQN WTIKARV+ K +R W NA+G GKL S++ LDES EI+A+ F D
Sbjct: 178 PIETLSPYQNNWTIKARVSYKGDLRTWTNAKGEGKLISVNFLDESDEIKASAFQDVAISA 237
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
H ++E+ KVYYIS ++ +NKKF+++++ YE+ T + C +V N+P + + F+
Sbjct: 238 HKLLEEGKVYYISKAKVQASNKKFNTLSHPYELVMDRDTKIEECF--DVDNVPKMHFNFI 295
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
L I + P+ IDVLG E +T K+ K + +R++T+VD++ ++ + LW
Sbjct: 296 KLNQIPNLDPNAIIDVLGALKIVNEPYKITAKSTGKEFDRRNVTIVDETGFAIDVGLWNN 355
Query: 624 EAETFDASNKPVIAVKAARVSEFQGNLLLMREI--------------------------- 656
A F +IA K+ RV +F G L + +
Sbjct: 356 TATEFSIPEGSIIAFKSCRVQDFNGRSLTLTQTGSMLPNPNTPESYSLKGWYDNQGVNAN 415
Query: 657 ------------------------QDQQLGMGDKA--DYCSVRGIIQVFR-GSNTTYKAC 689
QD+ LG+ + DY +V+ I + N Y AC
Sbjct: 416 FNNLKVESSGGETKIGDRKTIAQAQDESLGLRSEKEPDYFTVKASISFIKTDPNFCYPAC 475
Query: 690 PSQ--------DCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQ 741
++ CNKK+++Q++ +RCEKC+K + TYR IL I D TN +WVTLF+
Sbjct: 476 TNEVQYNNRKSACNKKLVEQHDNSWRCEKCDKNYAQPTYRYILTCSIMDETNQIWVTLFE 535
Query: 742 NEAESILGVTAQEVGESTEDHPALKKAL----FTQYIFRLRAKLEHYN 785
EA ILG A E+ +D A K + F +++FR+RAK + YN
Sbjct: 536 REALKILGKDANELIALQDDSAAFKDYIQEKCFQEHVFRIRAKQDTYN 583
Score = 188 bits (478), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 109/336 (32%), Positives = 182/336 (54%), Gaps = 20/336 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
+NKKF+++++ YE+ T + C + V N+P + + F+ L I + P+ IDVLG
Sbjct: 257 SNKKFNTLSHPYELVMDRDTKIEECFD--VDNVPKMHFNFIKLNQIPNLDPNAIIDVLGA 314
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
E +T K+ K + +R++T+VD++ ++ + LW A F +IA K+ R
Sbjct: 315 LKIVNEPYKITAKSTGKEFDRRNVTIVDETGFAIDVGLWNNTATEFSIPEGSIIAFKSCR 374
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAGN 184
V +F G++L+L+ + + NP+ PE + L+GW+ Q N F + + G G G+
Sbjct: 375 VQDF-NGRSLTLTQTGSMLPNPNTPESYSLKGWYDNQGVNANFNNLKVESSG-GETKIGD 432
Query: 185 LLLMREIQDQQLGMGDKA--DYCSVRGIIQVFR-GSNTTYKACPSQ--------DCNKKV 233
+ + QD+ LG+ + DY +V+ I + N Y AC ++ CNKK+
Sbjct: 433 RKTIAQAQDESLGLRSEKEPDYFTVKASISFIKTDPNFCYPACTNEVQYNNRKSACNKKL 492
Query: 234 IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGES 293
++Q++ +RCEKC+K + TYR IL I D TN +WVTLF+ EA ILG A E+
Sbjct: 493 VEQHDNSWRCEKCDKNYAQPTYRYILTCSIMDETNQIWVTLFEREALKILGKDANELIAL 552
Query: 294 TEDHPALKKAL----FTQYIFRLRAKLEHYNGTKKI 325
+D A K + F +++FR+RAK + YN ++
Sbjct: 553 QDDSAAFKDYIQEKCFQEHVFRIRAKQDTYNDQVRV 588
>gi|326511146|dbj|BAJ87587.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 940
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 146/412 (35%), Positives = 216/412 (52%), Gaps = 72/412 (17%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNR 502
PI +L+PYQ WTIKARVT K +R +N A+GSGK+FS DLLD G EIRAT F+ ++
Sbjct: 277 PISALNPYQRTWTIKARVTAKAHVRHFNKAKGSGKVFSFDLLDAQGVEIRATCFDAAVDQ 336
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F+D+IE DKVY +S +LKPANK+F+ +NNDYEM+ S+++ C+ D+ ++P +++ F
Sbjct: 337 FYDVIEVDKVYLVSRGSLKPANKRFNPLNNDYEMNLEPSSSIEVCSGDD-SSIPKLQFNF 395
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
+ IA + D ID+LGV +V K +T KR + L D S SV +T WG
Sbjct: 396 RQISEIANMDKDTTIDLLGVVTSVRPSFTVMLKNGGET-QKRVLQLKDMSGCSVDITFWG 454
Query: 623 K--EAET------FDASNKPVIAVKAARVSEFQG------NLLLMR-------------- 654
+AE D+ P++A+K+ RV EF G N L++
Sbjct: 455 NFCDAEGQQLQSLCDSGLNPILALKSGRVGEFNGKTVSTTNSSLLKINPDFAEAKRLGQW 514
Query: 655 ------------------------------EIQDQQLGMGDKADYCSVRGIIQVFRGSNT 684
+I+D++LG +K D+ +V+G I N
Sbjct: 515 YITEGKIAACTSLSGEMSSMGRTDVRKKTAQIKDERLGQSEKPDWITVQGAISQIYTDNF 574
Query: 685 TYKACPSQ----DCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLF 740
Y AC ++ CNKKVI+ +GM+ CEKC + T YR +L I D T + T F
Sbjct: 575 CYPACTTEVNGKRCNKKVINNGDGMWLCEKCEQSSETCEYRYLLSCHIQDHTGFTYATAF 634
Query: 741 QNEAESILGVTAQEV----GESTED---HPALKKALFTQYIFRLRAKLEHYN 785
Q + I+G+ AQ++ E +D +++ F QY+F+L+ K E YN
Sbjct: 635 QESGQEIVGLPAQDLFRIKHEEQDDVRFAEIIQQVRFQQYLFKLKVKEEVYN 686
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/341 (33%), Positives = 181/341 (53%), Gaps = 25/341 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK+F+ +NNDYEM+ S+++ C+ D+ ++P +++ F + IA + D ID+LG
Sbjct: 356 PANKRFNPLNNDYEMNLEPSSSIEVCSGDD-SSIPKLQFNFRQISEIANMDKDTTIDLLG 414
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK--EAET------FDASNK 116
V +V K +T KR + L D S SV +T WG +AE D+
Sbjct: 415 VVTSVRPSFTVMLKNGGET-QKRVLQLKDMSGCSVDITFWGNFCDAEGQQLQSLCDSGLN 473
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGG 176
P++A+K+ RV EF G KT+S + SS+L +NPD E +L W+ T+ + + +G
Sbjct: 474 PILALKSGRVGEFNG-KTVSTTNSSLLKINPDFAEAKRLGQWYITEG--KIAACTSLSGE 530
Query: 177 MGG-GAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQ----DCNK 231
M G +I+D++LG +K D+ +V+G I N Y AC ++ CNK
Sbjct: 531 MSSMGRTDVRKKTAQIKDERLGQSEKPDWITVQGAISQIYTDNFCYPACTTEVNGKRCNK 590
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV- 290
KVI+ +GM+ CEKC + T YR +L I D T + T FQ + I+G+ AQ++
Sbjct: 591 KVINNGDGMWLCEKCEQSSETCEYRYLLSCHIQDHTGFTYATAFQESGQEIVGLPAQDLF 650
Query: 291 ---GESTED---HPALKKALFTQYIFRLRAKLEHYNGTKKI 325
E +D +++ F QY+F+L+ K E YN ++
Sbjct: 651 RIKHEEQDDVRFAEIIQQVRFQQYLFKLKVKEEVYNDEPRV 691
>gi|50406267|ref|XP_456619.1| DEHA2A06776p [Debaryomyces hansenii CBS767]
gi|49652283|emb|CAG84575.1| DEHA2A06776p [Debaryomyces hansenii CBS767]
Length = 620
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 136/415 (32%), Positives = 206/415 (49%), Gaps = 72/415 (17%)
Query: 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDEC 500
+ I LSPYQN+W IKARV+ K IR+W+NARG GKLF+++ LDES EIRAT FND
Sbjct: 175 HVNAIEQLSPYQNQWVIKARVSYKGDIRKWSNARGEGKLFNVNFLDESDEIRATAFNDLA 234
Query: 501 NRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKY 560
+F+ +E+ KVYYIS ++ A +FS +++ YE++ T V C + ++P + +
Sbjct: 235 EKFYQELEEGKVYYISKARIQQAKPQFSHLSHPYELALDRDTNVEECF--DTTDVPKIHF 292
Query: 561 CFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTL 620
F L I P+ IDV+GV + + +T K+ K + +R+IT+VD S ++T+ L
Sbjct: 293 NFTKLNQIESCEPNSIIDVIGVLKEVNPVFQITAKSTGKPFDRRNITIVDDSNFAITVGL 352
Query: 621 WGKEAETFDASNKPVIAVKAARVSEFQG-------------------------------- 648
W A FD S VIA K ++ +F G
Sbjct: 353 WNNTAVDFDTSEGSVIAFKGCKIQDFAGRSLTLTHAGSMMANPDTAEAYQLKGWFDNQGV 412
Query: 649 ---------------NLLLMR----EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKAC 689
NL+ R + Q++ LGM +K D+ +++ + F+ N Y AC
Sbjct: 413 NENFKTLKNENSSNQNLINNRKSILQAQEENLGMSEKPDFFNIKATVNFFKTENFCYPAC 472
Query: 690 PSQD----------CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTL 739
+ CN+KV++Q +G +RCEKC+ FN YR IL + D + +W+TL
Sbjct: 473 NNSLQSSSQQPSTTCNRKVVEQPDGTWRCEKCDINFNEPHYRYILNCSVMDSSGQLWMTL 532
Query: 740 FQNEAESILGVTAQEVGESTEDHPALKKALFTQYI---------FRLRAKLEHYN 785
F EA + G TA E+ E + +F I FRL+A+ + YN
Sbjct: 533 FDQEANKLFGKTAGELLTLREQQTNNENNVFQDLINDITMKEFNFRLKARQDSYN 587
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/340 (30%), Positives = 172/340 (50%), Gaps = 24/340 (7%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A +FS +++ YE++ T V C + ++P + + F L I P+ IDV+GV
Sbjct: 257 AKPQFSHLSHPYELALDRDTNVEECFD--TTDVPKIHFNFTKLNQIESCEPNSIIDVIGV 314
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ + +T K+ K + +R+IT+VD S ++T+ LW A FD S VIA K +
Sbjct: 315 LKEVNPVFQITAKSTGKPFDRRNITIVDDSNFAITVGLWNNTAVDFDTSEGSVIAFKGCK 374
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAGN 184
+ +F G++L+L+ + + NPD E ++L+GWF Q N F+ + N
Sbjct: 375 IQDF-AGRSLTLTHAGSMMANPDTAEAYQLKGWFDNQGVNENFKTLKNENSS-NQNLINN 432
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD----------CNKKVI 234
+ + Q++ LGM +K D+ +++ + F+ N Y AC + CN+KV+
Sbjct: 433 RKSILQAQEENLGMSEKPDFFNIKATVNFFKTENFCYPACNNSLQSSSQQPSTTCNRKVV 492
Query: 235 DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGEST 294
+Q +G +RCEKC+ FN YR IL + D + +W+TLF EA + G TA E+
Sbjct: 493 EQPDGTWRCEKCDINFNEPHYRYILNCSVMDSSGQLWMTLFDQEANKLFGKTAGELLTLR 552
Query: 295 EDHPALKKALFTQYI---------FRLRAKLEHYNGTKKI 325
E + +F I FRL+A+ + YNG ++
Sbjct: 553 EQQTNNENNVFQDLINDITMKEFNFRLKARQDSYNGVVRV 592
>gi|302667076|ref|XP_003025132.1| hypothetical protein TRV_00711 [Trichophyton verrucosum HKI 0517]
gi|291189215|gb|EFE44521.1| hypothetical protein TRV_00711 [Trichophyton verrucosum HKI 0517]
Length = 475
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 152/466 (32%), Positives = 230/466 (49%), Gaps = 80/466 (17%)
Query: 394 KIGNPQPLNTNTDNSSTQQTPAATNTNGSNGV--HNNVAIPRQASAPVVQTHP------- 444
+IG+P+PL + + Q+ ++ N HN P Q ++ P
Sbjct: 14 RIGDPKPLEPKSGDEMGGQSTTLSSNEFYNAPQPHN----PPQHFQNAQRSRPSGMASNA 69
Query: 445 ----IVSLSPY-QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE 499
I +LSP+ N+WTIKAR T+K+ I+ W N G GKLFS++LLD+SGEIRAT F D+
Sbjct: 70 NIFSIEALSPFANNRWTIKARCTHKSNIKTWKNTFGEGKLFSVNLLDDSGEIRATAFKDQ 129
Query: 500 CNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV 558
C+ + + E+ VYYIS+ CT+K A K+FS++NNDYE++F TV+ ED+ ++P +
Sbjct: 130 CDLLYPIFEEGAVYYISSPCTVKMAKKEFSNVNNDYELTFDRD-TVVEKAEDQ-NDVPQI 187
Query: 559 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM 618
++ F L + I IDVLG+ D S VT KT K Y KR++TLVD S SV +
Sbjct: 188 RFNFTSLGNLQSIDKGTTIDVLGILKDVDATSQVTSKTTGKPYDKRELTLVDNSGFSVRL 247
Query: 619 TLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM------------------------- 653
T+WG A FD + V+A K +VS+F G L +
Sbjct: 248 TVWGNTATNFDTPPESVVAFKGVKVSDFGGRTLSLLSSGTVTVDPDIEEAHRLKGWYDAQ 307
Query: 654 ---------------------------REIQDQQLGMGDKADYCSVRGIIQVFRGSNTTY 686
EI+D++L D + S++ + + N Y
Sbjct: 308 GKSNSFTAYSSGATGGGSGSWPTFKTISEIRDEELPSADSFEAFSLKATV-IHVKDNLCY 366
Query: 687 KACPSQDC-NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
ACP++ C NKKV + + CE+C + + YR IL + D T +W++ F +
Sbjct: 367 PACPNEACKNKKVTRGDLDQWHCERCERSYANPKYRYILSLNACDHTGQIWLSCFDEAGQ 426
Query: 746 SILGVTAQEVGESTEDHPAL-----KKALFTQYIFRLRAKLEHYNK 786
I G+TA E+ + E+ A K A + + F+ RAKL+ Y +
Sbjct: 427 MIFGMTADELMKIKEEDDAAANEITKGATYCTWNFKCRAKLDTYQE 472
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 115/321 (35%), Positives = 176/321 (54%), Gaps = 11/321 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++NNDYE++F T V+ ED+ ++P +++ F L + I IDVLG+
Sbjct: 154 AKKEFSNVNNDYELTFDRDT-VVEKAEDQ-NDVPQIRFNFTSLGNLQSIDKGTTIDVLGI 211
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D S VT KT K Y KR++TLVD S SV +T+WG A FD + V+A K +
Sbjct: 212 LKDVDATSQVTSKTTGKPYDKRELTLVDNSGFSVRLTVWGNTATNFDTPPESVVAFKGVK 271
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRTGGMGGGAAGN 184
VS+F GG+TLSL S ++++PDI E H+L+GW+ Q + F S G G G+
Sbjct: 272 VSDF-GGRTLSLLSSGTVTVDPDIEEAHRLKGWYDAQGKSNSFTAYSSGATGGGSGSWPT 330
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDC-NKKVIDQNNGMYRC 243
+ EI+D++L D + S++ + + N Y ACP++ C NKKV + + C
Sbjct: 331 FKTISEIRDEELPSADSFEAFSLKATV-IHVKDNLCYPACPNEACKNKKVTRGDLDQWHC 389
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPAL--- 300
E+C + + YR IL + D T +W++ F + I G+TA E+ + E+ A
Sbjct: 390 ERCERSYANPKYRYILSLNACDHTGQIWLSCFDEAGQMIFGMTADELMKIKEEDDAAANE 449
Query: 301 --KKALFTQYIFRLRAKLEHY 319
K A + + F+ RAKL+ Y
Sbjct: 450 ITKGATYCTWNFKCRAKLDTY 470
>gi|343428808|emb|CBQ72353.1| probable replication factor-A protein 1 [Sporisorium reilianum
SRZ2]
Length = 633
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 134/366 (36%), Positives = 205/366 (56%), Gaps = 51/366 (13%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGV+ + AMLA+Q ++ G L + +++ +Y +S S NR +LI+L+L +
Sbjct: 55 VSDGVHY-AQAMLASQKRSMVESGELEKNCFIRVSQY-----ASNSVQNRRILILLDLEV 108
Query: 385 I-KPGTEIGFKIGNPQPLN----TNTDNSSTQQTPAATNTNGSNGVHNNVAIPR------ 433
+ KP + ++GNP ++ T + + G++ + NN + R
Sbjct: 109 VHKPTAD---RLGNPTNVDDFVKTEGARGVKHELGGGASALGNSALGNNPSAGRTTPATS 165
Query: 434 ----------------------QASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWN 471
A P+ +PI LSPYQN+WTIKARVT+K+ IR W+
Sbjct: 166 AMGGAGAAAKVGASGRPGGSSVHAGMPI---YPIEGLSPYQNRWTIKARVTSKSDIRHWS 222
Query: 472 NARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSIN 531
NARG GKLFS++LLD+SGEI+AT FND +RFH +++++ VY IS + A K+FS++
Sbjct: 223 NARGDGKLFSVNLLDDSGEIKATGFNDAVDRFHPLLQENHVYLISKARVNIAKKQFSNLQ 282
Query: 532 NDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSS 591
N+YE++F +ST + C + ++P VKY FV + + + P++ DV+G+ ELS
Sbjct: 283 NEYEITFENSTEIEECT--DATDVPEVKYEFVRINELESVEPNQTCDVIGILDSYGELSE 340
Query: 592 VTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF----DASNKPVIAVKAARVSEFQ 647
+ K +Q+ KR++TLVDQ SV +TLWGK AETF KPVIA K +V +F
Sbjct: 341 IVSKASQRPVQKRELTLVDQGNRSVRLTLWGKNAETFPNNAGVDEKPVIAFKGVKVGDFG 400
Query: 648 GNLLLM 653
G L M
Sbjct: 401 GRSLSM 406
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 126/336 (37%), Positives = 193/336 (57%), Gaps = 19/336 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ N+YE++F +ST + C + ++P VKY FV + + + P++ DV+G+
Sbjct: 274 AKKQFSNLQNEYEITFENSTEIEECTD--ATDVPEVKYEFVRINELESVEPNQTCDVIGI 331
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF----DASNKPVIAV 121
ELS + K +Q+ KR++TLVDQ SV +TLWGK AETF KPVIA
Sbjct: 332 LDSYGELSEIVSKASQRPVQKRELTLVDQGNRSVRLTLWGKNAETFPNNAGVDEKPVIAF 391
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGG 180
K +V +F GG++LS+ SS + +NPDI E H L+GWF + +F+P + G GG
Sbjct: 392 KGVKVGDF-GGRSLSMFSSSTMLINPDITESHVLRGWFDNDGAHAQFQPYTNAGVGGAGG 450
Query: 181 AAG---NLLLMR---EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVI 234
A G NL R +++D+ LGM +K DY +VR + + N Y ACPS CNKKV
Sbjct: 451 AGGAGANLAERRTIVQVKDENLGMSEKPDYFNVRATVVYIKQENLYYTACPSDGCNKKVS 510
Query: 235 DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGEST 294
+ +RCEKC++ + YR IL + D T +W++ F +A ++G++A E+ +
Sbjct: 511 LNHENNWRCEKCDRSYPQPEYRYILSTNVADATGQIWLSGFNEDATKLIGMSAGELHQLR 570
Query: 295 ED-----HPALKKALFTQYIFRLRAKLEHYNGTKKI 325
ED + L +A Y F RAK++ +N T ++
Sbjct: 571 EDSESEFNAVLHRAANRMYTFNCRAKMDTFNDTARV 606
Score = 99.8 bits (247), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 76/136 (55%), Gaps = 5/136 (3%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 714
+++D+ LGM +K DY +VR + + N Y ACPS CNKKV + +RCEKC++
Sbjct: 466 QVKDENLGMSEKPDYFNVRATVVYIKQENLYYTACPSDGCNKKVSLNHENNWRCEKCDRS 525
Query: 715 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED-----HPALKKAL 769
+ YR IL + D T +W++ F +A ++G++A E+ + ED + L +A
Sbjct: 526 YPQPEYRYILSTNVADATGQIWLSGFNEDATKLIGMSAGELHQLREDSESEFNAVLHRAA 585
Query: 770 FTQYIFRLRAKLEHYN 785
Y F RAK++ +N
Sbjct: 586 NRMYTFNCRAKMDTFN 601
>gi|388856821|emb|CCF49608.1| probable Replication factor-A protein 1 [Ustilago hordei]
Length = 627
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 208/363 (57%), Gaps = 52/363 (14%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGV+ + +MLA+Q ++ G L + +V+I +Y +S S NR +LI+L+L +
Sbjct: 55 LSDGVHY-AQSMLASQKRSMVESGELEKHCLVRISQY-----ASNSVQNRRILILLDLEV 108
Query: 385 I-KPGTEIGFKIGNPQPLNTNTDNS-----STQQTPAATNTNGSNGVHNNVA---IPR-- 433
KP + ++G+P TN D++ +Q A N G++ + NN A P
Sbjct: 109 AHKPTAD---RLGSP----TNVDDAIKSEGGVKQEGGAGNALGNSNLGNNSAGRTTPATS 161
Query: 434 -------------------QASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNAR 474
A P+ +PI LSPYQN+WTIKARVT+K+ IR W+N R
Sbjct: 162 AAGAGKIGGGAGRPGGSSVNAGMPI---YPIEGLSPYQNRWTIKARVTSKSDIRHWSNQR 218
Query: 475 GSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDY 534
G GKLFS++LLD+SGEI+AT FND +RF+ +++++ VY IS + A K+FS++ N+Y
Sbjct: 219 GEGKLFSVNLLDDSGEIKATGFNDTVDRFYSLLKENHVYLISKAKVNIAKKQFSNLQNEY 278
Query: 535 EMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTG 594
E++F +ST + C + ++P VKY FV + + + P++ DV+GV ELS +
Sbjct: 279 EITFENSTEIEECT--DATDVPEVKYEFVRINELESVEPNQTCDVIGVLDSYGELSEIVS 336
Query: 595 KTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF----DASNKPVIAVKAARVSEFQGNL 650
K +Q+ KR++TLVDQ SV +TLWGK AETF KPVIA K +V +F G
Sbjct: 337 KASQRPVQKRELTLVDQGGKSVRLTLWGKNAETFPNNAGVDEKPVIAFKGVKVGDFGGRS 396
Query: 651 LLM 653
L M
Sbjct: 397 LSM 399
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 127/360 (35%), Positives = 199/360 (55%), Gaps = 23/360 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ N+YE++F +ST + C + ++P VKY FV + + + P++ DV+GV
Sbjct: 267 AKKQFSNLQNEYEITFENSTEIEECTD--ATDVPEVKYEFVRINELESVEPNQTCDVIGV 324
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF----DASNKPVIAV 121
ELS + K +Q+ KR++TLVDQ SV +TLWGK AETF KPVIA
Sbjct: 325 LDSYGELSEIVSKASQRPVQKRELTLVDQGGKSVRLTLWGKNAETFPNNAGVDEKPVIAF 384
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGG 180
K +V +F GG++LS+ SS + +NPDI E H L+GW+ +FE S G G
Sbjct: 385 KGVKVGDF-GGRSLSMFSSSTMLINPDITESHVLRGWYDNDGARAQFEAFSNAGVGGGAL 443
Query: 181 AAG----NLLLMR---EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKV 233
A N+ R +++D+ LGM +K DY ++R + + N Y ACPS CNKKV
Sbjct: 444 GAAGAGGNMAERRTIAQVKDENLGMTEKPDYFNIRATVVYIKQENLYYTACPSDGCNKKV 503
Query: 234 IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE- 292
+ +RCEKC++ + YR IL + D T +W++ F +A ++G++A E+ +
Sbjct: 504 TLDHENNWRCEKCDRSYEAPEYRYILSTNVADATGQIWLSGFNEDATKLIGMSAGELHQL 563
Query: 293 ----STEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINS---FAMLATQLNDII 345
+E AL +A Y+F RAK++ +N ++ ++ ++ FA +L D I
Sbjct: 564 RENSESEYSAALHRAANRMYLFNCRAKMDTFNDQTRVRYTISRSAPVDFAKAGAELVDAI 623
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 77/136 (56%), Gaps = 5/136 (3%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 714
+++D+ LGM +K DY ++R + + N Y ACPS CNKKV + +RCEKC++
Sbjct: 460 QVKDENLGMTEKPDYFNIRATVVYIKQENLYYTACPSDGCNKKVTLDHENNWRCEKCDRS 519
Query: 715 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-----STEDHPALKKAL 769
+ YR IL + D T +W++ F +A ++G++A E+ + +E AL +A
Sbjct: 520 YEAPEYRYILSTNVADATGQIWLSGFNEDATKLIGMSAGELHQLRENSESEYSAALHRAA 579
Query: 770 FTQYIFRLRAKLEHYN 785
Y+F RAK++ +N
Sbjct: 580 NRMYLFNCRAKMDTFN 595
>gi|254565291|ref|XP_002489756.1| Subunit of heterotrimeric Replication Protein A (RPA) [Komagataella
pastoris GS115]
gi|238029552|emb|CAY67475.1| Subunit of heterotrimeric Replication Protein A (RPA) [Komagataella
pastoris GS115]
gi|328350171|emb|CCA36571.1| Replication protein A 70 kDa DNA-binding subunit [Komagataella
pastoris CBS 7435]
Length = 621
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 128/403 (31%), Positives = 208/403 (51%), Gaps = 59/403 (14%)
Query: 435 ASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRAT 494
++A H I L+PYQN WTIKARV+ K+ +R+W+N RG G+LF+++LLDE+ EIRAT
Sbjct: 173 STAKFPNIHAIDQLNPYQNNWTIKARVSYKSDMRKWSNQRGEGQLFNVNLLDETNEIRAT 232
Query: 495 MFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN 554
FND ++++D++++ KVYYIS ++PA +FS++ + YE++ T +I ++ +
Sbjct: 233 AFNDVADKYYDLLQEGKVYYISKARIQPAKPQFSNLTHTYELALDRDTQIIEA--EDASD 290
Query: 555 MPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA 614
+PS+ + FV L + ++ + IDV+GV + K+ + + +RDI +VD +
Sbjct: 291 VPSLHFNFVKLNKVQDLDANAIIDVIGVIKVVNPAFQIVAKSTGRPFDRRDIEVVDNTGF 350
Query: 615 SVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL------------------LMREI 656
++T+ LW A FD V+A K A+V +F G L ++
Sbjct: 351 AITVGLWNNTALEFDIPVGSVVAFKGAKVQDFGGRSLSLTQSATIITNPDSPEAYQLKAW 410
Query: 657 QDQQLG---------------------------------------MGDKADYCSVRGIIQ 677
DQQ G DK DY S++ I
Sbjct: 411 YDQQGGSNQEFKSLKNEVSSNSGLNTKQDIQSRKTILQAQSEELGKNDKPDYFSIKAYIS 470
Query: 678 VFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWV 737
R N +Y AC S+ CN+KVI Q++ +RCEKC+ +R IL + + D T +WV
Sbjct: 471 YIRTENFSYPACASEGCNRKVIQQSDDTWRCEKCDVNHPKPNHRYILTLSVVDHTGQLWV 530
Query: 738 TLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAK 780
TLF ++A+ +LG +A E+ + E+ + F Q R++ K
Sbjct: 531 TLFDDQAQQLLGQSAGELIDLKENDMSENNHAFQQVFNRIQMK 573
Score = 189 bits (479), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 103/336 (30%), Positives = 181/336 (53%), Gaps = 18/336 (5%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA +FS++ + YE++ T +I ++ ++PS+ + FV L + ++ + IDV+G
Sbjct: 260 PAKPQFSNLTHTYELALDRDTQIIEA--EDASDVPSLHFNFVKLNKVQDLDANAIIDVIG 317
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V + K+ + + +RDI +VD + ++T+ LW A FD V+A K A
Sbjct: 318 VIKVVNPAFQIVAKSTGRPFDRRDIEVVDNTGFAITVGLWNNTALEFDIPVGSVVAFKGA 377
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ--TNTRFEPVSQRTGGMGGGAA 182
+V +F GG++LSL+ S+ + NPD PE ++L+ W+ Q +N F+ + G
Sbjct: 378 KVQDF-GGRSLSLTQSATIITNPDSPEAYQLKAWYDQQGGSNQEFKSLKNEVSSNSGLNT 436
Query: 183 GNLLLMR----EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNN 238
+ R + Q ++LG DK DY S++ I R N +Y AC S+ CN+KVI Q++
Sbjct: 437 KQDIQSRKTILQAQSEELGKNDKPDYFSIKAYISYIRTENFSYPACASEGCNRKVIQQSD 496
Query: 239 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-----GES 293
+RCEKC+ +R IL + + D T +WVTLF ++A+ +LG +A E+ +
Sbjct: 497 DTWRCEKCDVNHPKPNHRYILTLSVVDHTGQLWVTLFDDQAQQLLGQSAGELIDLKENDM 556
Query: 294 TEDHPALKKAL----FTQYIFRLRAKLEHYNGTKKI 325
+E++ A ++ ++ FR++A + Y G +I
Sbjct: 557 SENNHAFQQVFNRIQMKEFSFRVKASPDSYKGQTRI 592
>gi|71022145|ref|XP_761303.1| hypothetical protein UM05156.1 [Ustilago maydis 521]
gi|46097797|gb|EAK83030.1| hypothetical protein UM05156.1 [Ustilago maydis 521]
Length = 623
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 131/353 (37%), Positives = 203/353 (57%), Gaps = 37/353 (10%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N + AMLA+Q ++ G L + +V++ ++ +S S NR +LI+L+L++
Sbjct: 56 LSDGINY-AQAMLASQKRSMVESGELEKNCLVRVTQF-----ASNSVQNRRILILLDLDV 109
Query: 385 IKPGTEIGFKIGNPQPL--------------------NTNTDNSSTQQTPAATNTNGSNG 424
+ TE ++G+P + N+ N+S +T AT+ G
Sbjct: 110 VHKPTED--RLGHPTNVEEAVKAEGGVKQEGGANALGNSALGNNSAGRTTPATSAMGKAA 167
Query: 425 VHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDL 484
A P+ +PI LSPYQN+WTIKARVT+K+ IR W+N RG GKLFS++L
Sbjct: 168 GGRPGGGSVHAGMPI---YPIEGLSPYQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNL 224
Query: 485 LDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTV 544
LD+SGEI+AT FND +RF+ +++++ VY IS + A K+FS++ N+YE++F +ST +
Sbjct: 225 LDDSGEIKATGFNDAVDRFYPLLQENHVYLISKARVNIAKKQFSNLQNEYEITFENSTEI 284
Query: 545 IPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKR 604
C + ++P VKY FV + + + ++ DV+G+ ELS + K +Q+ KR
Sbjct: 285 EECT--DATDVPEVKYEFVRINELESVEANQTCDVIGILDSYGELSEIVSKASQRPVQKR 342
Query: 605 DITLVDQSQASVTMTLWGKEAETF----DASNKPVIAVKAARVSEFQGNLLLM 653
++TLVDQ SV +TLWGK AETF KPV+A K +V +F G L M
Sbjct: 343 ELTLVDQGNRSVKLTLWGKTAETFPTNAGVDEKPVLAFKGVKVGDFGGRSLSM 395
Score = 215 bits (547), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 120/338 (35%), Positives = 192/338 (56%), Gaps = 22/338 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ N+YE++F +ST + C + ++P VKY FV + + + ++ DV+G+
Sbjct: 263 AKKQFSNLQNEYEITFENSTEIEECTD--ATDVPEVKYEFVRINELESVEANQTCDVIGI 320
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF----DASNKPVIAV 121
ELS + K +Q+ KR++TLVDQ SV +TLWGK AETF KPV+A
Sbjct: 321 LDSYGELSEIVSKASQRPVQKRELTLVDQGNRSVKLTLWGKTAETFPTNAGVDEKPVLAF 380
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGG 180
K +V +F GG++LS+ SS + +NPDI E H L+GW+ + +F+P + G G
Sbjct: 381 KGVKVGDF-GGRSLSMFSSSTMLINPDITESHVLRGWYDNDGAHAQFQPYTNGGVGGGAM 439
Query: 181 AAGNLLL-------MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKV 233
G + +++D+ LGM +K DY +VR + + N Y AC S+ CNKKV
Sbjct: 440 GGGGAGANMAERRTIVQVKDENLGMSEKPDYFNVRATVVYIKQENLYYTACASEGCNKKV 499
Query: 234 -IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE 292
+D N +RCEKC++ + T YR IL + D T +W++ F +A ++G++A E+ +
Sbjct: 500 NLDHENN-WRCEKCDRSYATPEYRYILSTNVADATGQMWLSGFNEDATQLIGMSAGELHK 558
Query: 293 STED-----HPALKKALFTQYIFRLRAKLEHYNGTKKI 325
E+ AL +A Y+F RAK++ +N T ++
Sbjct: 559 LREESESEFSAALHRAANRMYMFNCRAKMDTFNDTARV 596
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 80/137 (58%), Gaps = 7/137 (5%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKV-IDQNNGMYRCEKCNK 713
+++D+ LGM +K DY +VR + + N Y AC S+ CNKKV +D N +RCEKC++
Sbjct: 456 QVKDENLGMSEKPDYFNVRATVVYIKQENLYYTACASEGCNKKVNLDHENN-WRCEKCDR 514
Query: 714 EFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED-----HPALKKA 768
+ T YR IL + D T +W++ F +A ++G++A E+ + E+ AL +A
Sbjct: 515 SYATPEYRYILSTNVADATGQMWLSGFNEDATQLIGMSAGELHKLREESESEFSAALHRA 574
Query: 769 LFTQYIFRLRAKLEHYN 785
Y+F RAK++ +N
Sbjct: 575 ANRMYMFNCRAKMDTFN 591
>gi|302498152|ref|XP_003011074.1| hypothetical protein ARB_02596 [Arthroderma benhamiae CBS 112371]
gi|291174622|gb|EFE30434.1| hypothetical protein ARB_02596 [Arthroderma benhamiae CBS 112371]
Length = 475
Score = 232 bits (591), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 154/466 (33%), Positives = 230/466 (49%), Gaps = 80/466 (17%)
Query: 394 KIGNPQPLNTNTDNSSTQQTPAATNTNGSNGV--HNNVAIPRQASAPVVQTHP------- 444
+IG+P+PL + + Q+ ++ N HN P Q ++ P
Sbjct: 14 RIGDPKPLEPKSGDEMGGQSTTLSSNEFYNAPQPHN----PPQHFQNAQRSRPSGMASNA 69
Query: 445 ----IVSLSPY-QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE 499
I +LSP+ NKWTIKAR T+K+ I+ W N G GKLFS++LLD+SGEIRAT F D+
Sbjct: 70 NIFSIEALSPFANNKWTIKARCTHKSNIKTWKNTFGEGKLFSVNLLDDSGEIRATAFKDQ 129
Query: 500 CNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV 558
C+ + + E+ VYYIS+ CT+K A K+FS++NNDYE++F TV+ ED+ ++P +
Sbjct: 130 CDLLYPIFEEGAVYYISSPCTVKMAKKEFSNVNNDYELTFDRD-TVVEKAEDQ-NDVPQI 187
Query: 559 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM 618
++ F L + I IDVLG+ D S VT KT K Y KR++TLVD S SV +
Sbjct: 188 RFNFTSLGNLQSIDKGTTIDVLGILKDVDATSQVTSKTTGKPYDKRELTLVDNSGFSVRL 247
Query: 619 TLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM------------------------- 653
T+WG A FD + V+A K +VS+F G L +
Sbjct: 248 TVWGNTATNFDTPPESVVAFKGVKVSDFGGRTLSLLSSGTVTVDPDIEEAHRLKGWYDAQ 307
Query: 654 ---------------------------REIQDQQLGMGDKADYCSVRGIIQVFRGSNTTY 686
EI+D++L D + S++ + + N Y
Sbjct: 308 GKSNSFTAYSSGATGGGGGSWPTFKTISEIRDEELPSADSFETFSLKATV-IHVKDNLCY 366
Query: 687 KACPSQDC-NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
ACP++ C NKKV + + CE+C + + YR IL + D T +W++ F +
Sbjct: 367 PACPNEACKNKKVTRGDLDQWHCERCERSYANPKYRYILSLNACDHTGQIWLSCFDEAGQ 426
Query: 746 SILGVTAQEVGE-STEDHPAL----KKALFTQYIFRLRAKLEHYNK 786
I G+TA E+ + ED A K A + + F+ RAKL+ Y +
Sbjct: 427 MIFGMTADELMKIKEEDDTAANEITKGATYCTWNFKCRAKLDTYQE 472
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 117/321 (36%), Positives = 177/321 (55%), Gaps = 11/321 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++NNDYE++F T V+ ED+ ++P +++ F L + I IDVLG+
Sbjct: 154 AKKEFSNVNNDYELTFDRDT-VVEKAEDQ-NDVPQIRFNFTSLGNLQSIDKGTTIDVLGI 211
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D S VT KT K Y KR++TLVD S SV +T+WG A FD + V+A K +
Sbjct: 212 LKDVDATSQVTSKTTGKPYDKRELTLVDNSGFSVRLTVWGNTATNFDTPPESVVAFKGVK 271
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRTGGMGGGAAGN 184
VS+F GG+TLSL S ++++PDI E H+L+GW+ Q + F S G GGG+
Sbjct: 272 VSDF-GGRTLSLLSSGTVTVDPDIEEAHRLKGWYDAQGKSNSFTAYSSGATGGGGGSWPT 330
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDC-NKKVIDQNNGMYRC 243
+ EI+D++L D + S++ + + N Y ACP++ C NKKV + + C
Sbjct: 331 FKTISEIRDEELPSADSFETFSLKATV-IHVKDNLCYPACPNEACKNKKVTRGDLDQWHC 389
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-STEDHPAL-- 300
E+C + + YR IL + D T +W++ F + I G+TA E+ + ED A
Sbjct: 390 ERCERSYANPKYRYILSLNACDHTGQIWLSCFDEAGQMIFGMTADELMKIKEEDDTAANE 449
Query: 301 --KKALFTQYIFRLRAKLEHY 319
K A + + F+ RAKL+ Y
Sbjct: 450 ITKGATYCTWNFKCRAKLDTY 470
>gi|366997334|ref|XP_003678429.1| hypothetical protein NCAS_0J01120 [Naumovozyma castellii CBS 4309]
gi|342304301|emb|CCC72091.1| hypothetical protein NCAS_0J01120 [Naumovozyma castellii CBS 4309]
Length = 613
Score = 231 bits (590), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 141/441 (31%), Positives = 221/441 (50%), Gaps = 79/441 (17%)
Query: 411 QQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREW 470
QQ P + T+ +N P S I LSPYQN WTIKARV+ K I++W
Sbjct: 152 QQQPQHSTTSSTN-------FPSSHSQKSKAIFAIEQLSPYQNAWTIKARVSYKGEIKKW 204
Query: 471 NNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSI 530
+N RG G LF+++ LD SGEIRAT FN+ +F++++++ KVYY+S L+PA +F+++
Sbjct: 205 HNQRGDGCLFNVNFLDTSGEIRATAFNENAEKFYEILQEGKVYYVSKARLQPAKPQFTNL 264
Query: 531 NNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAA--- 587
+ YE+S T V C++++ N+P + F+ L + + N+DVLG+
Sbjct: 265 THPYELSMDRETVVEECHDED--NVPKTHFNFIKLDAVQNQENNTNVDVLGIIKTVNPHF 322
Query: 588 ELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQ 647
EL+S G K + +RDI++VD + +++ LW ++A F+ V+A+K RVS+F
Sbjct: 323 ELTSRAG----KRFDRRDISIVDDTGFEISVGLWNQQALDFNLPEGSVVAIKGVRVSDFG 378
Query: 648 GNLLLM---------REIQD---------------------QQLGMG------------- 664
G L M EI + Q+ GMG
Sbjct: 379 GKSLSMGFNSTLVSNPEIPEAFSLKGWYDNTGRTGHFTSLKQENGMGAISAENLTKFISQ 438
Query: 665 ---------------DKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 709
+K DY SV+ I + N Y AC +++CNKKVI+Q +G +RCE
Sbjct: 439 RITISRAIAENLGKSEKGDYFSVKAAISFLKVDNFAYPACSNENCNKKVIEQPDGTWRCE 498
Query: 710 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA----- 764
KC +R +L + I D TN +W+TLF +A+ +L V A + ++ P
Sbjct: 499 KCETNNPAPEWRYMLTISIMDETNQLWLTLFNEQAQQLLEVDANTLIALKDNDPEEFTKR 558
Query: 765 LKKALFTQYIFRLRAKLEHYN 785
+ +Y FR+RA+ ++YN
Sbjct: 559 TQNIQMNEYDFRIRAREDNYN 579
Score = 192 bits (488), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 118/364 (32%), Positives = 193/364 (53%), Gaps = 31/364 (8%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA +F+++ + YE+S T V C++++ N+P + F+ L + + N+DVLG
Sbjct: 256 PAKPQFTNLTHPYELSMDRETVVEECHDED--NVPKTHFNFIKLDAVQNQENNTNVDVLG 313
Query: 65 VCIDAA---ELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAV 121
+ EL+S GK + +RDI++VD + +++ LW ++A F+ V+A+
Sbjct: 314 IIKTVNPHFELTSRAGKR----FDRRDISIVDDTGFEISVGLWNQQALDFNLPEGSVVAI 369
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGA 181
K RVS+F GGK+LS+ +S L NP+IPE L+GW+ T ++ GMG +
Sbjct: 370 KGVRVSDF-GGKSLSMGFNSTLVSNPEIPEAFSLKGWYDNTGRTGHFTSLKQENGMGAIS 428
Query: 182 AGNLL--------LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKV 233
A NL + R I + LG +K DY SV+ I + N Y AC +++CNKKV
Sbjct: 429 AENLTKFISQRITISRAIA-ENLGKSEKGDYFSVKAAISFLKVDNFAYPACSNENCNKKV 487
Query: 234 IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGES 293
I+Q +G +RCEKC +R +L + I D TN +W+TLF +A+ +L V A +
Sbjct: 488 IEQPDGTWRCEKCETNNPAPEWRYMLTISIMDETNQLWLTLFNEQAQQLLEVDANTLIAL 547
Query: 294 TEDHPA-----LKKALFTQYIFRLRAKLEHYNGTKKIPDGV-NINSF------AMLATQL 341
++ P + +Y FR+RA+ ++YN +I V NI+ LAT+L
Sbjct: 548 KDNDPEEFTKRTQNIQMNEYDFRIRAREDNYNDQTRIRYTVANIHKLNYKVEADFLATEL 607
Query: 342 NDII 345
+ ++
Sbjct: 608 SKVL 611
>gi|367036607|ref|XP_003648684.1| hypothetical protein THITE_2106430 [Thielavia terrestris NRRL 8126]
gi|346995945|gb|AEO62348.1| hypothetical protein THITE_2106430 [Thielavia terrestris NRRL 8126]
Length = 610
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 134/336 (39%), Positives = 203/336 (60%), Gaps = 30/336 (8%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIG--F 393
MLATQ N ++ G L +IV++K+Y S V ++V+I+L+L +I + +G
Sbjct: 64 MLATQANHVVHSGQLDRGSIVRLKQYQASSVK-----GKNVMIVLDLEVI---SHLGNPE 115
Query: 394 KIGNPQPLNTNTDNSSTQ---------QTPAATNTNGSNGVHNNVAIPRQASAPVVQTH- 443
KIG P+ + T ST ++ A+ T V VA A+A H
Sbjct: 116 KIGEPKAVEVRTQPHSTTIGGAGFYGVKSEPASETKSQ--VQKQVASRPAAAASGSGGHA 173
Query: 444 -----PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFND 498
PI +LSPY NKWTIK RVT+K+ IR W+ A G GKLFS++LLDE+GEIRAT FN+
Sbjct: 174 ASTIYPIEALSPYSNKWTIKVRVTSKSDIRTWHKASGDGKLFSVNLLDETGEIRATGFNE 233
Query: 499 ECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPS 557
+ ++F+D++++ VYYIS C ++ A K+FS++ NDYEM F TVI ED+ ++P
Sbjct: 234 QVDQFYDLLQEGSVYYISTPCKVQLAKKQFSNLANDYEMMFERD-TVIEKAEDQ-SSVPQ 291
Query: 558 VKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVT 617
+++ F ++ + ++ D +DV+GV + E++ + KT QK Y KR++TLVD + SV
Sbjct: 292 LRFNFCNIEELRDVEKDATVDVIGVLKEVGEVTEIISKTTQKPYDKRELTLVDDTGFSVR 351
Query: 618 MTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM 653
+T+WGK A FDA+ + +IA+K RVS+F G L +
Sbjct: 352 VTIWGKTATEFDANPESIIALKGTRVSDFGGRSLSL 387
Score = 221 bits (564), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 124/328 (37%), Positives = 190/328 (57%), Gaps = 12/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ NDYEM F T VI ED+ ++P +++ F ++ + ++ D +DV+GV
Sbjct: 259 AKKQFSNLANDYEMMFERDT-VIEKAEDQ-SSVPQLRFNFCNIEELRDVEKDATVDVIGV 316
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ E++ + KT QK Y KR++TLVD + SV +T+WGK A FDA+ + +IA+K R
Sbjct: 317 LKEVGEVTEIISKTTQKPYDKRELTLVDDTGFSVRVTIWGKTATEFDANPESIIALKGTR 376
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTG-GMGGGAAG 183
VS+F GG++LSL S ++++PDIPE HKL+GW+ ST N F S G G
Sbjct: 377 VSDF-GGRSLSLLSSGTMAIDPDIPEAHKLKGWYDSTGRNNAFATHSNLASVGAAAGRKD 435
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ + +++ ++LG D A Y +V+ I R N Y AC S++CNKKV D +G +RC
Sbjct: 436 DTKTIGQVKSEKLGF-DDAVYFTVKATIVHIRQENFAYPACRSENCNKKVTDMGDGTWRC 494
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE--STEDHPALK 301
EKCN + YR I+ + + D T +W+ F + A I+G TA E+ E +T D L
Sbjct: 495 EKCNLSHDRPQYRYIMSINVSDHTGQMWLNCFDDSARIIMGKTADELVEMQATGDKEGLD 554
Query: 302 KALFT----QYIFRLRAKLEHYNGTKKI 325
A + FR RAK++ Y ++
Sbjct: 555 AAFEAANCRKLTFRCRAKMDTYGDQPRV 582
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 74/136 (54%), Gaps = 7/136 (5%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 714
+++ ++LG D A Y +V+ I R N Y AC S++CNKKV D +G +RCEKCN
Sbjct: 442 QVKSEKLGF-DDAVYFTVKATIVHIRQENFAYPACRSENCNKKVTDMGDGTWRCEKCNLS 500
Query: 715 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE--STEDHPALKKALFT- 771
+ YR I+ + + D T +W+ F + A I+G TA E+ E +T D L A
Sbjct: 501 HDRPQYRYIMSINVSDHTGQMWLNCFDDSARIIMGKTADELVEMQATGDKEGLDAAFEAA 560
Query: 772 ---QYIFRLRAKLEHY 784
+ FR RAK++ Y
Sbjct: 561 NCRKLTFRCRAKMDTY 576
>gi|322698294|gb|EFY90065.1| replication factor-A protein 1 [Metarhizium acridum CQMa 102]
Length = 595
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 129/325 (39%), Positives = 205/325 (63%), Gaps = 20/325 (6%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AMLATQ N +I DG L + ++K+Y + + +++L+IL+L +I+ + K
Sbjct: 62 AMLATQANHVIHDGKLVRGSFARVKQY-----NPQNLKGKNILVILDLEVIE-SLGVQEK 115
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNN-VAIPRQASAPVVQ----THPIVSLS 449
IG+P + TN + +QT A+ + G+ + ++P S P V +PI LS
Sbjct: 116 IGSPTAVETN---EAKEQTIASNDFYGNKKEESKPQSMP---SRPAVHDGGNIYPIEGLS 169
Query: 450 PYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEK 509
P+Q+KWTIKARVT K+ I+ W+ G GKLFS++LLDESGEI+AT FND+C+ F+D++++
Sbjct: 170 PFQHKWTIKARVTMKSDIKTWHKPTGEGKLFSVNLLDESGEIKATGFNDQCDAFYDLLQE 229
Query: 510 DKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI 568
VYYIS+ C + A K+FS++ NDYE++F T + ED+ N+P V++ F ++ +
Sbjct: 230 GSVYYISSPCRVNLAKKQFSNLPNDYEITFERDTRIEKA-EDQT-NVPQVRFNFCTIQEL 287
Query: 569 AEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF 628
+ D +DV+GV D E+S +T K++ K + KR++TLVD + SV +T+WGK A +F
Sbjct: 288 QNVEKDNTVDVIGVLKDVGEVSEITSKSSGKPFQKRELTLVDDTGYSVRVTVWGKTANSF 347
Query: 629 DASNKPVIAVKAARVSEFQGNLLLM 653
DA+ + V+A K +VS+F G L +
Sbjct: 348 DANPESVVAFKGTKVSDFGGKSLSL 372
Score = 215 bits (547), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 120/346 (34%), Positives = 196/346 (56%), Gaps = 12/346 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ NDYE++F T + ED+ N+P V++ F ++ + + D +DV+GV
Sbjct: 244 AKKQFSNLPNDYEITFERDTRIEKA-EDQT-NVPQVRFNFCTIQELQNVEKDNTVDVIGV 301
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D E+S +T K++ K + KR++TLVD + SV +T+WGK A +FDA+ + V+A K +
Sbjct: 302 LKDVGEVSEITSKSSGKPFQKRELTLVDDTGYSVRVTVWGKTANSFDANPESVVAFKGTK 361
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMG--GGAAG 183
VS+F GGK+LSL S ++++PDIP+ H+L+GW+ + T Q MG GG A
Sbjct: 362 VSDF-GGKSLSLLSSGTMTVDPDIPDAHRLKGWYDSSGRTDNFATHQNMASMGNAGGRAN 420
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ +++D+ LGM D Y S++ I + Y AC + CNKKV++ +G Y C
Sbjct: 421 ETKTIAQVKDENLGM-DAPAYYSIKATIVFVKQDTFCYPACSKEGCNKKVVETGDGWY-C 478
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
EKC+ YR I+ + + D T+ W+ F E+I G+TA ++ E E+ A A
Sbjct: 479 EKCSVSHERPDYRYIVSLNVADHTSHQWLNCFNETGEAIFGMTANQLMELKENDDAKFMA 538
Query: 304 LF-----TQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDI 344
F + FR RAK++++ T+++ V SF ++ N +
Sbjct: 539 AFEAVNCKKLNFRCRAKMDNFGDTQRVRYQVISASFLDFKSEGNKL 584
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 714
+++D+ LGM D Y S++ I + Y AC + CNKKV++ +G Y CEKC+
Sbjct: 427 QVKDENLGM-DAPAYYSIKATIVFVKQDTFCYPACSKEGCNKKVVETGDGWY-CEKCSVS 484
Query: 715 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALF---- 770
YR I+ + + D T+ W+ F E+I G+TA ++ E E+ A A F
Sbjct: 485 HERPDYRYIVSLNVADHTSHQWLNCFNETGEAIFGMTANQLMELKENDDAKFMAAFEAVN 544
Query: 771 -TQYIFRLRAKLEHY 784
+ FR RAK++++
Sbjct: 545 CKKLNFRCRAKMDNF 559
>gi|72168826|ref|XP_786722.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Strongylocentrotus purpuratus]
Length = 305
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/275 (44%), Positives = 176/275 (64%), Gaps = 11/275 (4%)
Query: 61 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIA 120
+V+GVC ++L++VT K++ + KR + LVD SQ V++TLWGKEAE FD S PVIA
Sbjct: 3 NVIGVCKSTSDLTAVTIKSSNREVNKRSLQLVDDSQKEVSLTLWGKEAEDFDGSGNPVIA 62
Query: 121 VKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRTGGMGG 179
VK AR+S F GG++LS+ +S+ +NPDIP+ H L+GWF ++ +++ + +S R G GG
Sbjct: 63 VKGARLSGF-GGRSLSVLQNSIFQVNPDIPKAHHLKGWFDSEGHSQDSQSISTRQGSGGG 121
Query: 180 GAAG-NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNN 238
G A N + ++ Q LG G+K DY +V+G I R N Y ACPS +CNKKV + +
Sbjct: 122 GGANTNWMTFHDVHAQNLGQGEKPDYFTVKGTILFVRKENCMYMACPSAECNKKVSENGD 181
Query: 239 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV------GE 292
G YRCEKC+K++ F YRL+L + D T++ W T FQ AE +L +AQE+ GE
Sbjct: 182 GSYRCEKCSKDYENFKYRLLLSANVADSTDNQWATCFQETAEQLLLKSAQELGSLKDQGE 241
Query: 293 STED--HPALKKALFTQYIFRLRAKLEHYNGTKKI 325
+TE + + A F Y+FR+R K+E YN ++
Sbjct: 242 ATEKEFNQVFQDACFIDYMFRMRIKMETYNEEARL 276
Score = 179 bits (454), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 100/270 (37%), Positives = 139/270 (51%), Gaps = 61/270 (22%)
Query: 578 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIA 637
+V+GVC ++L++VT K++ + KR + LVD SQ V++TLWGKEAE FD S PVIA
Sbjct: 3 NVIGVCKSTSDLTAVTIKSSNREVNKRSLQLVDDSQKEVSLTLWGKEAEDFDGSGNPVIA 62
Query: 638 VKAARVSEFQG------------------------------------------------- 648
VK AR+S F G
Sbjct: 63 VKGARLSGFGGRSLSVLQNSIFQVNPDIPKAHHLKGWFDSEGHSQDSQSISTRQGSGGGG 122
Query: 649 ----NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNG 704
N + ++ Q LG G+K DY +V+G I R N Y ACPS +CNKKV + +G
Sbjct: 123 GANTNWMTFHDVHAQNLGQGEKPDYFTVKGTILFVRKENCMYMACPSAECNKKVSENGDG 182
Query: 705 MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV------GES 758
YRCEKC+K++ F YRL+L + D T++ W T FQ AE +L +AQE+ GE+
Sbjct: 183 SYRCEKCSKDYENFKYRLLLSANVADSTDNQWATCFQETAEQLLLKSAQELGSLKDQGEA 242
Query: 759 TED--HPALKKALFTQYIFRLRAKLEHYNK 786
TE + + A F Y+FR+R K+E YN+
Sbjct: 243 TEKEFNQVFQDACFIDYMFRMRIKMETYNE 272
>gi|50287931|ref|XP_446394.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525702|emb|CAG59321.1| unnamed protein product [Candida glabrata]
Length = 627
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 143/446 (32%), Positives = 225/446 (50%), Gaps = 66/446 (14%)
Query: 403 TNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVT 462
+N + + T P++T G+ +N AS I LSPYQN WTIKARV+
Sbjct: 151 SNVNGNGTLGMPSSTTAIGNATTSHNNKFNDSASQKSRAIFAIEQLSPYQNVWTIKARVS 210
Query: 463 NKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKP 522
K I+ W+N RG GKL +++ LD SGEIRAT FND F++++++ KVYY+S L+P
Sbjct: 211 YKGDIKTWHNQRGEGKLLNVNFLDTSGEIRATAFNDNATAFNEILQEGKVYYVSKARLQP 270
Query: 523 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 582
A +F+++++ YE++ T VI + DE N+P + F+ L I + N+DVLG+
Sbjct: 271 AKPQFTNLSHPYELNLDRET-VIEESFDE-NNVPKTHFNFIKLDNIQSQENNSNVDVLGI 328
Query: 583 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 642
+T + +K + +RDI +VD S ++++ LW ++A F+ V+A+K R
Sbjct: 329 IQTVNPHFELTSRAGKK-FDRRDIQIVDDSGFAISVGLWNQQALDFNLPEGSVVAIKGVR 387
Query: 643 VSE---------FQGNLLLMREI---------QDQQ------------------------ 660
VS+ F L+ EI DQQ
Sbjct: 388 VSDFGGKSLSMGFNSTLIANPEIPEAYKLKGWYDQQGKDQDFTSLKQDAGAGTTSAANLA 447
Query: 661 ----------------LGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNG 704
LG ++ D+ SV+ I + N Y AC +++CNKKVI+Q +G
Sbjct: 448 KFISQRITIARAEAENLGKNERGDFFSVKAAISFMKVDNFAYPACSNENCNKKVIEQPDG 507
Query: 705 MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP- 763
+RCEKC+ + +R IL + I D T ++W+TLF ++A+ +LGV A + E+ P
Sbjct: 508 TWRCEKCDINNPSPRWRYILTISIIDETGNLWLTLFDDQAKQLLGVDANTLMSLKENDPD 567
Query: 764 ----ALKKALFTQYIFRLRAKLEHYN 785
+ QY FR+RA+ ++YN
Sbjct: 568 EFTRTTQNVQMNQYDFRIRAREDNYN 593
Score = 196 bits (499), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 110/333 (33%), Positives = 186/333 (55%), Gaps = 16/333 (4%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA +F+++++ YE++ T VI + DE N+P + F+ L I + N+DVLG
Sbjct: 270 PAKPQFTNLSHPYELNLDRET-VIEESFDE-NNVPKTHFNFIKLDNIQSQENNSNVDVLG 327
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+ +T + +K + +RDI +VD S ++++ LW ++A F+ V+A+K
Sbjct: 328 IIQTVNPHFELTSRAGKK-FDRRDIQIVDDSGFAISVGLWNQQALDFNLPEGSVVAIKGV 386
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGN 184
RVS+F GGK+LS+ +S L NP+IPE +KL+GW+ Q + ++ G G +A N
Sbjct: 387 RVSDF-GGKSLSMGFNSTLIANPEIPEAYKLKGWYDQQGKDQDFTSLKQDAGAGTTSAAN 445
Query: 185 L-------LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQN 237
L + + + + LG ++ D+ SV+ I + N Y AC +++CNKKVI+Q
Sbjct: 446 LAKFISQRITIARAEAENLGKNERGDFFSVKAAISFMKVDNFAYPACSNENCNKKVIEQP 505
Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH 297
+G +RCEKC+ + +R IL + I D T ++W+TLF ++A+ +LGV A + E+
Sbjct: 506 DGTWRCEKCDINNPSPRWRYILTISIIDETGNLWLTLFDDQAKQLLGVDANTLMSLKEND 565
Query: 298 P-----ALKKALFTQYIFRLRAKLEHYNGTKKI 325
P + QY FR+RA+ ++YN +I
Sbjct: 566 PDEFTRTTQNVQMNQYDFRIRAREDNYNDQTRI 598
>gi|322710190|gb|EFZ01765.1| replication factor-A protein 1 [Metarhizium anisopliae ARSEF 23]
Length = 595
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/325 (39%), Positives = 204/325 (62%), Gaps = 20/325 (6%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AMLATQ N +I +G L + ++K+Y + + +++L+IL+L +I+ + K
Sbjct: 62 AMLATQANHVIHEGKLVRGSFARVKQY-----NPQNLKGKNILVILDLEVIE-SLGVQEK 115
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNN-VAIPRQASAPVVQ----THPIVSLS 449
IG+P + TN + +QT A+ + G+ + A+P S P V +PI LS
Sbjct: 116 IGSPTAVETN---EAKEQTIASNDFYGTKKEESKPQAMP---SRPAVHDGGNIYPIEGLS 169
Query: 450 PYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEK 509
P+Q+KWTIKARVT K+ I+ W+ G GKLFS++LLDESGEI+AT FND+C+ F+D++++
Sbjct: 170 PFQHKWTIKARVTMKSDIKTWHKPTGEGKLFSVNLLDESGEIKATGFNDQCDAFYDLLQE 229
Query: 510 DKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI 568
VYYIS+ C + A K+FS++ NDYE++F T + ED+ N+P V++ F ++ +
Sbjct: 230 GSVYYISSPCRVNLAKKQFSNLPNDYEITFERDTRIEKA-EDQT-NVPQVRFNFCTIQEL 287
Query: 569 AEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF 628
+ D +DV+GV D E+S +T K + K + KR++TLVD + SV +T+WGK A +F
Sbjct: 288 QNVEKDNTVDVIGVLKDVGEVSEITSKASGKPFQKRELTLVDDTGYSVRVTVWGKTANSF 347
Query: 629 DASNKPVIAVKAARVSEFQGNLLLM 653
DA+ + V+A K +VS+F G L +
Sbjct: 348 DANPESVVAFKGTKVSDFGGKSLSL 372
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/327 (34%), Positives = 189/327 (57%), Gaps = 12/327 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ NDYE++F T + ED+ N+P V++ F ++ + + D +DV+GV
Sbjct: 244 AKKQFSNLPNDYEITFERDTRIEKA-EDQT-NVPQVRFNFCTIQELQNVEKDNTVDVIGV 301
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D E+S +T K + K + KR++TLVD + SV +T+WGK A +FDA+ + V+A K +
Sbjct: 302 LKDVGEVSEITSKASGKPFQKRELTLVDDTGYSVRVTVWGKTANSFDANPESVVAFKGTK 361
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMG--GGAAG 183
VS+F GGK+LSL S ++++PDIP+ H+L+GW+ + T Q MG GG A
Sbjct: 362 VSDF-GGKSLSLLSSGTMTVDPDIPDAHRLKGWYDSSGRTDNFATHQNMASMGNAGGRAN 420
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ +++++ LGM D Y S++ I + N Y AC + CNKKV++ +G Y C
Sbjct: 421 ENKTIAQVKEENLGM-DAPAYYSIKATIVFVKQENFCYPACSKEGCNKKVVETGDGWY-C 478
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
EKC+ YR I+ + + D T+ W+ F E+I G++A ++ E ++ A A
Sbjct: 479 EKCSVSHERPDYRYIVSLNVADHTSHQWLNCFNETGEAIFGMSANQLMELKDNDDAKFMA 538
Query: 304 LF-----TQYIFRLRAKLEHYNGTKKI 325
F + FR RAK++++ T+++
Sbjct: 539 AFEAVNCKKLNFRCRAKMDNFGDTQRV 565
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 714
+++++ LGM D Y S++ I + N Y AC + CNKKV++ +G + CEKC+
Sbjct: 427 QVKEENLGM-DAPAYYSIKATIVFVKQENFCYPACSKEGCNKKVVETGDG-WYCEKCSVS 484
Query: 715 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALF---- 770
YR I+ + + D T+ W+ F E+I G++A ++ E ++ A A F
Sbjct: 485 HERPDYRYIVSLNVADHTSHQWLNCFNETGEAIFGMSANQLMELKDNDDAKFMAAFEAVN 544
Query: 771 -TQYIFRLRAKLEHY 784
+ FR RAK++++
Sbjct: 545 CKKLNFRCRAKMDNF 559
>gi|51512372|gb|AAU05383.1| replication protein A 70 kDa subunit [Ustilago maydis]
Length = 623
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/353 (37%), Positives = 202/353 (57%), Gaps = 37/353 (10%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N + AMLA+Q ++ G L + +V++ ++ +S S NR +LI+L+L++
Sbjct: 56 LSDGINY-AQAMLASQKRSMVESGELEKNCLVRVTQF-----ASNSVQNRRILILLDLDV 109
Query: 385 IKPGTEIGFKIGNPQPL--------------------NTNTDNSSTQQTPAATNTNGSNG 424
+ TE ++G+P + N+ N+S +T AT+ G
Sbjct: 110 VHKPTED--RLGHPTNVEEAVKAEGGVKQEGGANALGNSALGNNSAGRTTPATSAMGKAA 167
Query: 425 VHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDL 484
A P+ +PI LSPYQN+WTIKARVT+K IR W+N RG GKLFS++L
Sbjct: 168 GGRPGGGSVHAGMPI---YPIEGLSPYQNRWTIKARVTSKFDIRHWSNQRGEGKLFSVNL 224
Query: 485 LDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTV 544
LD+SGEI+AT FND +RF+ +++++ VY IS + A K+FS++ N+YE++F +ST +
Sbjct: 225 LDDSGEIKATGFNDAVDRFYPLLQENHVYLISKARVNIAKKQFSNLQNEYEITFENSTEI 284
Query: 545 IPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKR 604
C + ++P VKY FV + + + ++ DV+G+ ELS + K +Q+ KR
Sbjct: 285 EECT--DATDVPEVKYEFVRINELESVEANQTCDVIGILDSYGELSEIVSKASQRPVQKR 342
Query: 605 DITLVDQSQASVTMTLWGKEAETF----DASNKPVIAVKAARVSEFQGNLLLM 653
++TLVDQ SV +TLWGK AETF KPV+A K +V +F G L M
Sbjct: 343 ELTLVDQGNRSVKLTLWGKTAETFPTNAGVDEKPVLAFKGVKVGDFGGRSLSM 395
Score = 215 bits (548), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 120/338 (35%), Positives = 192/338 (56%), Gaps = 22/338 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ N+YE++F +ST + C + ++P VKY FV + + + ++ DV+G+
Sbjct: 263 AKKQFSNLQNEYEITFENSTEIEECTD--ATDVPEVKYEFVRINELESVEANQTCDVIGI 320
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF----DASNKPVIAV 121
ELS + K +Q+ KR++TLVDQ SV +TLWGK AETF KPV+A
Sbjct: 321 LDSYGELSEIVSKASQRPVQKRELTLVDQGNRSVKLTLWGKTAETFPTNAGVDEKPVLAF 380
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGG 180
K +V +F GG++LS+ SS + +NPDI E H L+GW+ + +F+P + G G
Sbjct: 381 KGVKVGDF-GGRSLSMFSSSTMLINPDITESHVLRGWYDNDGAHAQFQPYTNGGVGGGAM 439
Query: 181 AAGNLLL-------MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKV 233
G + +++D+ LGM +K DY +VR + + N Y AC S+ CNKKV
Sbjct: 440 GGGGAGANMAERRTIVQVKDENLGMSEKPDYFNVRATVVYIKQENLYYTACASEGCNKKV 499
Query: 234 -IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE 292
+D N +RCEKC++ + T YR IL + D T +W++ F +A ++G++A E+ +
Sbjct: 500 NLDHENN-WRCEKCDRSYATPEYRYILSTNVADATGQMWLSGFNEDATQLIGMSAGELHK 558
Query: 293 STED-----HPALKKALFTQYIFRLRAKLEHYNGTKKI 325
E+ AL +A Y+F RAK++ +N T ++
Sbjct: 559 LREESESEFSAALHRAANRMYMFNCRAKMDTFNDTARV 596
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 80/137 (58%), Gaps = 7/137 (5%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKV-IDQNNGMYRCEKCNK 713
+++D+ LGM +K DY +VR + + N Y AC S+ CNKKV +D N +RCEKC++
Sbjct: 456 QVKDENLGMSEKPDYFNVRATVVYIKQENLYYTACASEGCNKKVNLDHENN-WRCEKCDR 514
Query: 714 EFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED-----HPALKKA 768
+ T YR IL + D T +W++ F +A ++G++A E+ + E+ AL +A
Sbjct: 515 SYATPEYRYILSTNVADATGQMWLSGFNEDATQLIGMSAGELHKLREESESEFSAALHRA 574
Query: 769 LFTQYIFRLRAKLEHYN 785
Y+F RAK++ +N
Sbjct: 575 ANRMYMFNCRAKMDTFN 591
>gi|392567006|gb|EIW60181.1| replication factor-a protein [Trametes versicolor FP-101664 SS1]
Length = 561
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/325 (40%), Positives = 192/325 (59%), Gaps = 21/325 (6%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
+MLATQLN ++ + + + +I I+++ + V + +LIIL L +++ E K
Sbjct: 17 SMLATQLNHLVEEEQILKHSIAVIEKFTCNLVQG-----KKLLIILALRVVQKEAE---K 68
Query: 395 IGNPQPLNTNTDNS-STQQTPAATNTNGSNGVHNNV--AIPRQASAPVVQ--------TH 443
IGNP + S Q +P+A T A P Q+S Q +
Sbjct: 69 IGNPVGIQARAGGSIEAQASPSAAVTPAPAASTKPAVSAAPAQSSRQPTQGNRGGRTAIY 128
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI SLSPYQN WTIKARV +K+ IR W+N RG GKLF+I L+DESGEIRAT FN +
Sbjct: 129 PIESLSPYQNHWTIKARVISKSEIRTWSNQRGEGKLFNITLMDESGEIRATGFNATVDEL 188
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+D I++ KVY+IS + A KKFS+I N+YE++ +T + C + ++P+VK+ F
Sbjct: 189 YDRIQEGKVYFISKAKVNLAKKKFSNIANEYELALERNTEIEEC--PDAADVPTVKFNFT 246
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
P+ + EI+ D D++GV + ELSS+T K K K+++T+VD S SV +TLWGK
Sbjct: 247 PIANLQEIAKDAVCDIVGVVKEVGELSSITSKATSKQIPKKELTVVDASGFSVKVTLWGK 306
Query: 624 EAETFDASNKPVIAVKAARVSEFQG 648
+AE ++ + PVIA K A+V +FQG
Sbjct: 307 QAEQYNEVDYPVIAFKGAKVGDFQG 331
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 121/333 (36%), Positives = 189/333 (56%), Gaps = 12/333 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A KKFS+I N+YE++ +T + C + ++P+VK+ F P+ + EI+ D D++GV
Sbjct: 208 AKKKFSNIANEYELALERNTEIEEC--PDAADVPTVKFNFTPIANLQEIAKDAVCDIVGV 265
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ ELSS+T K K K+++T+VD S SV +TLWGK+AE ++ + PVIA K A+
Sbjct: 266 VKEVGELSSITSKATSKQIPKKELTVVDASGFSVKVTLWGKQAEQYNEVDYPVIAFKGAK 325
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
V +FQ G++LS+ SS L +NPDIPE H L+GW+ + T GGG + +
Sbjct: 326 VGDFQ-GRSLSMMSSSSLIINPDIPEAHHLRGWYDAAGAEQTYQSHTNTMSSGGGVSFDR 384
Query: 186 LLMREIQD---QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
+R + D +LGM DK D S R I +G N Y ACPSQ CNKKV+ + +R
Sbjct: 385 AEIRSLNDVKTSELGMSDKVDTFSSRATIMHIKGDNIAYPACPSQGCNKKVVLMGDS-WR 443
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-----GESTEDH 297
CE C+K + +R I+P+ + D++ W F + + G+ A ++ + TE +
Sbjct: 444 CENCDKSYPQPEHRYIVPMAVADYSGQAWFQGFNDVGLIVFGMPANDLVAIKERDDTEFN 503
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKIPDGVN 330
L+ + T Y F RAK ++YN ++ G++
Sbjct: 504 RVLEGTIGTTYNFACRAKQDNYNDQARVRYGIS 536
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 6/138 (4%)
Query: 653 MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCN 712
+ +++ +LGM DK D S R I +G N Y ACPSQ CNKKV+ + +RCE C+
Sbjct: 390 LNDVKTSELGMSDKVDTFSSRATIMHIKGDNIAYPACPSQGCNKKVVLMGDS-WRCENCD 448
Query: 713 KEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-----GESTEDHPALKK 767
K + +R I+P+ + D++ W F + + G+ A ++ + TE + L+
Sbjct: 449 KSYPQPEHRYIVPMAVADYSGQAWFQGFNDVGLIVFGMPANDLVAIKERDDTEFNRVLEG 508
Query: 768 ALFTQYIFRLRAKLEHYN 785
+ T Y F RAK ++YN
Sbjct: 509 TIGTTYNFACRAKQDNYN 526
>gi|356529769|ref|XP_003533460.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Glycine max]
Length = 894
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 146/429 (34%), Positives = 218/429 (50%), Gaps = 74/429 (17%)
Query: 427 NNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD 486
N + R +AP + PI +L+PYQ+ WTIKARVT K +R + NARG GK+FS DLLD
Sbjct: 237 NRAPMGRNEAAPRII--PIAALNPYQSMWTIKARVTFKGELRHYTNARGDGKVFSFDLLD 294
Query: 487 -ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVI 545
+ GEIRAT FN ++F+++IE KVY IS ++KPA K F+ + ND E++ ++ +
Sbjct: 295 SDGGEIRATCFNAVADQFYNVIEAGKVYLISRGSIKPAQKNFNHLRNDQELTLDVASIIQ 354
Query: 546 PCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRD 605
PC +D ++PS + + P+ I + + +DV+GV + +S+ K N KR
Sbjct: 355 PCLDDN-DSIPSQTFNYRPISEIESLENNSIVDVIGVVTSISPTASIMRK-NGTEVQKRT 412
Query: 606 ITLVDQSQASVTMTLWGK----EAETF----DASNKPVIAVKAARVSEFQGN-------- 649
+ L D S SV +TLWG E + DA PV+A KA RV++F G
Sbjct: 413 LQLKDMSGRSVELTLWGNFCIVEGQRLQTICDAGEFPVLATKAVRVNDFNGKSVGTIATS 472
Query: 650 ---------------------------LLLMRE---------------IQDQQLGMGDKA 667
L + RE I+D++LG +K
Sbjct: 473 QLYVEPDFPEACTLKRWFENEGKSVPTLSISREISNLGKTDVRKTISQIKDEKLGTSEKP 532
Query: 668 DYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLI 723
D+ SV + + N Y CP + CNKKV + +G + CE+CN+ +T +R +
Sbjct: 533 DWISVFAAVSHIKVDNFCYPGCPLKIGDRQCNKKVTNNADGTWHCERCNQSIDTCDFRYL 592
Query: 724 LPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-----GESTEDHPA--LKKALFTQYIFR 776
L + I D T WVT FQ E I+G+ A+++ E +D + K LFT+Y+F+
Sbjct: 593 LSMQIQDHTGITWVTAFQESGEEIMGIPAKDLYYMKYEEQDDDKFSEIFHKVLFTEYMFK 652
Query: 777 LRAKLEHYN 785
LR K E Y+
Sbjct: 653 LRIKEEFYS 661
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/341 (31%), Positives = 175/341 (51%), Gaps = 25/341 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K F+ + ND E++ ++ + PC +D ++PS + + P+ I + + +DV+G
Sbjct: 331 PAQKNFNHLRNDQELTLDVASIIQPCLDDN-DSIPSQTFNYRPISEIESLENNSIVDVIG 389
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK----EAETF----DASNK 116
V + +S+ K N KR + L D S SV +TLWG E + DA
Sbjct: 390 VVTSISPTASIMRK-NGTEVQKRTLQLKDMSGRSVELTLWGNFCIVEGQRLQTICDAGEF 448
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTG 175
PV+A KA RV++F G K++ +S L + PD PE L+ WF + + +S+
Sbjct: 449 PVLATKAVRVNDFNG-KSVGTIATSQLYVEPDFPEACTLKRWFENEGKSVPTLSISREIS 507
Query: 176 GMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNK 231
+G + +I+D++LG +K D+ SV + + N Y CP + CNK
Sbjct: 508 NLGKTDVRKTI--SQIKDEKLGTSEKPDWISVFAAVSHIKVDNFCYPGCPLKIGDRQCNK 565
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV- 290
KV + +G + CE+CN+ +T +R +L + I D T WVT FQ E I+G+ A+++
Sbjct: 566 KVTNNADGTWHCERCNQSIDTCDFRYLLSMQIQDHTGITWVTAFQESGEEIMGIPAKDLY 625
Query: 291 ----GESTEDHPA--LKKALFTQYIFRLRAKLEHYNGTKKI 325
E +D + K LFT+Y+F+LR K E Y+ ++I
Sbjct: 626 YMKYEEQDDDKFSEIFHKVLFTEYMFKLRIKEEFYSDEQRI 666
Score = 40.8 bits (94), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
MLATQ ND++ G L + ++V++ ++I + V S R ++II++L+++ E+
Sbjct: 58 GMLATQKNDLVHAGKLQKGSVVRLTQFICNVVQS-----RKIIIIVDLDVVLDKCEL--- 109
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNTN 420
IG P P + S T+ N
Sbjct: 110 IGEPVPAPKDAPTESATGQSGVTSGN 135
>gi|242765554|ref|XP_002340998.1| replication protein A 70 kDa DNA-binding subunit [Talaromyces
stipitatus ATCC 10500]
gi|218724194|gb|EED23611.1| replication protein A 70 kDa DNA-binding subunit [Talaromyces
stipitatus ATCC 10500]
Length = 586
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/324 (38%), Positives = 197/324 (60%), Gaps = 15/324 (4%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
M+ATQ N ++ DG L + +V++K + S + + +LIIL+L +++ E KI
Sbjct: 47 MIATQANHLVKDGILRKGCLVRLKSF-----QSNAIKGKKILIILDLEVLQHLGEYE-KI 100
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIP----RQASAPVVQT-HPIVSLSP 450
G+P+PL T ++ + TP + NG+ G + RQAS+ T +PI ++SP
Sbjct: 101 GDPKPLETKAEDEE-KATPTMVSGNGTYGAKAPTSYDSRNVRQASSSGHATIYPIEAISP 159
Query: 451 YQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKD 510
Y +KWTIKAR T+K+ I+ W+ + GKLFS++LLD+SGEIRAT FND+C+ +D+ ++
Sbjct: 160 YSHKWTIKARCTSKSAIKTWHRSNSEGKLFSVNLLDDSGEIRATGFNDQCDSLYDLFQEG 219
Query: 511 KVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIA 569
VYYIS+ C ++ A K+FS++NNDYE++F T V + + ++P V++ F + +
Sbjct: 220 SVYYISSPCRVQIAKKQFSNLNNDYELTFERDTIVEKAEDQD--SVPQVRFNFTTIGDLQ 277
Query: 570 EISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD 629
+ D IDV+GV + S +T KT K Y KRD+TLVD + SV +T+WG A FD
Sbjct: 278 SVEKDTTIDVIGVLKEVGPTSQITSKTTNKPYDKRDLTLVDNTGFSVRLTVWGNLATNFD 337
Query: 630 ASNKPVIAVKAARVSEFQGNLLLM 653
+ V+A K +VS+F G L +
Sbjct: 338 TLPESVVAFKGVKVSDFGGRSLSL 361
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 116/328 (35%), Positives = 186/328 (56%), Gaps = 11/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++NNDYE++F T V + + ++P V++ F + + + D IDV+GV
Sbjct: 233 AKKQFSNLNNDYELTFERDTIVEKAEDQD--SVPQVRFNFTTIGDLQSVEKDTTIDVIGV 290
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ S +T KT K Y KRD+TLVD + SV +T+WG A FD + V+A K +
Sbjct: 291 LKEVGPTSQITSKTTNKPYDKRDLTLVDNTGFSVRLTVWGNLATNFDTLPESVVAFKGVK 350
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGM--GGGAA 182
VS+F GG++LSL S ++++PDI E H+L+GW+ Q + F + + G GGG
Sbjct: 351 VSDF-GGRSLSLLSSGTMTVDPDIEEAHRLKGWYDAQGRSDTFTSHASMSDGTTPGGGKL 409
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
+ +I+++QLGM + AD+ S++ I + N +Y ACPSQ CNKKV + + G +R
Sbjct: 410 DQYKTIAQIREEQLGMSEAADFFSLKATIIYIKQDNVSYPACPSQGCNKKVSELDPGQWR 469
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKK 302
CE+C+K + YR I+ + + D T +W+ F I+G TA E+ ++
Sbjct: 470 CERCDKTYPKPEYRYIMLINVSDHTGQLWLNCFDEVGRLIMGTTADELVNMEAENKYETS 529
Query: 303 ALFTQ-----YIFRLRAKLEHYNGTKKI 325
LF + + FR +AK++HY ++I
Sbjct: 530 ELFQEANCQTWNFRCKAKMDHYGEQQRI 557
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 78/137 (56%), Gaps = 5/137 (3%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 714
+I+++QLGM + AD+ S++ I + N +Y ACPSQ CNKKV + + G +RCE+C+K
Sbjct: 417 QIREEQLGMSEAADFFSLKATIIYIKQDNVSYPACPSQGCNKKVSELDPGQWRCERCDKT 476
Query: 715 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQ-- 772
+ YR I+ + + D T +W+ F I+G TA E+ ++ LF +
Sbjct: 477 YPKPEYRYIMLINVSDHTGQLWLNCFDEVGRLIMGTTADELVNMEAENKYETSELFQEAN 536
Query: 773 ---YIFRLRAKLEHYNK 786
+ FR +AK++HY +
Sbjct: 537 CQTWNFRCKAKMDHYGE 553
>gi|302690362|ref|XP_003034860.1| hypothetical protein SCHCODRAFT_50382 [Schizophyllum commune H4-8]
gi|300108556|gb|EFI99957.1| hypothetical protein SCHCODRAFT_50382 [Schizophyllum commune H4-8]
Length = 628
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 134/335 (40%), Positives = 189/335 (56%), Gaps = 32/335 (9%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AMLATQLND+ + + +IV+I R S NR ++I+L L I++ E +
Sbjct: 73 AMLATQLNDV----GIEKNSIVRISR-----ASRNIVQNRRLVIVLGLEIVQHCDEKLRR 123
Query: 395 IGNPQ--------------PLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQA----- 435
N + P N + + Q PAA + + +P Q
Sbjct: 124 DPNDEKQPYTLPSEYLKVKPDGENGQSPAPQSKPAAAPSTSTVPRTATPQLPAQPHRDSK 183
Query: 436 -SAPVVQT-HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRA 493
+AP ++ +PI LSPYQN WTIKARVT K+ IR W+N RG G+LF++ L+D++GEIRA
Sbjct: 184 NTAPNGRSIYPIEGLSPYQNNWTIKARVTQKSDIRRWSNQRGEGRLFNVTLMDDTGEIRA 243
Query: 494 TMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVG 553
T FN + +D E+ KVYY+S + A KKFS++NNDYE+S ST V PC E
Sbjct: 244 TGFNQAVDELYDKFEEGKVYYVSKARVNLAKKKFSNVNNDYELSLERSTEVEPCL--EAA 301
Query: 554 NMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ 613
++P++KY FV L + E+ D N DV+GV + ELS +T KT +T KR++TLVD +
Sbjct: 302 DVPTIKYNFVKLDALQEVPKDSNCDVIGVVKEVGELSEITTKTTNRTMKKRELTLVDDTG 361
Query: 614 ASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG 648
SV +TLWG AE ++ PVIA K +V +F G
Sbjct: 362 YSVRVTLWGNTAEKYEEEGHPVIAFKGVKVGDFGG 396
Score = 212 bits (539), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 126/345 (36%), Positives = 182/345 (52%), Gaps = 37/345 (10%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A KKFS++NNDYE+S ST V PC E ++P++KY FV L + E+ D N DV+GV
Sbjct: 273 AKKKFSNVNNDYELSLERSTEVEPCLE--AADVPTIKYNFVKLDALQEVPKDSNCDVIGV 330
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ ELS +T KT +T KR++TLVD + SV +TLWG AE ++ PVIA K +
Sbjct: 331 VKEVGELSEITTKTTNRTMKKRELTLVDDTGYSVRVTLWGNTAEKYEEEGHPVIAFKGVK 390
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT----------------RFEP 169
V +F GG++LS+ MSS++ +NPD E L+GWF T F+
Sbjct: 391 VGDF-GGRSLSMLMSSMMFVNPDTTEAFHLRGWFDDDGKTLQFSSHTSGGGAGTGRGFDR 449
Query: 170 VSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDC 229
QRT + EI++ LGMGD+ DY S R I + +N Y AC S DC
Sbjct: 450 DDQRT-------------LMEIKNANLGMGDQPDYFSSRATIMHIKDNNFAYPACRSPDC 496
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
NKKV++ G +RCEKCN ++ YR +L + + D W F + + I +A E
Sbjct: 497 NKKVVENGPGEWRCEKCNVSHSSPDYRFMLQLAVADLHGQAWFQGFNDAGQVIFNRSANE 556
Query: 290 V-----GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDGV 329
+ G+ A +A + + F RAK + +N ++ G+
Sbjct: 557 IMQMKSGDDDGFLRAFAQANYQAFNFNCRAKADTWNDETRVRYGI 601
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 653 MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCN 712
+ EI++ LGMGD+ DY S R I + +N Y AC S DCNKKV++ G +RCEKCN
Sbjct: 455 LMEIKNANLGMGDQPDYFSSRATIMHIKDNNFAYPACRSPDCNKKVVENGPGEWRCEKCN 514
Query: 713 KEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-----GESTEDHPALKK 767
++ YR +L + + D W F + + I +A E+ G+ A +
Sbjct: 515 VSHSSPDYRFMLQLAVADLHGQAWFQGFNDAGQVIFNRSANEIMQMKSGDDDGFLRAFAQ 574
Query: 768 ALFTQYIFRLRAKLEHYN 785
A + + F RAK + +N
Sbjct: 575 ANYQAFNFNCRAKADTWN 592
>gi|346974864|gb|EGY18316.1| replication factor-A protein [Verticillium dahliae VdLs.17]
Length = 617
Score = 229 bits (584), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 136/342 (39%), Positives = 204/342 (59%), Gaps = 26/342 (7%)
Query: 330 NINSF--AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKP 387
+IN++ +M+ATQ+N +I DG L + +V++ +Y S +++LIIL L +I P
Sbjct: 57 DINNYVQSMMATQVNHVIHDGHLVKNCLVRVTQY-----QPNSVKGKNILIILGLEVI-P 110
Query: 388 GTEIGFKIGNP---QPLNT-------NTDNSSTQ-QTPAATNTNGSNGVHNNVAIPRQAS 436
KIG+P +PL NT N+ Q Q IP ++
Sbjct: 111 ELGTPEKIGDPLAFEPLPEGAAPNPGNTGNAPIQGQNFYGAKKEEEKEKPRISQIPSRSV 170
Query: 437 APVVQ----THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIR 492
A +PI +LSPY +KWTIKARVT K+ IR W+ G GKLFS++LLDESGEI+
Sbjct: 171 AGTSHGSSNIYPIEALSPYAHKWTIKARVTQKSDIRTWHKPSGEGKLFSVNLLDESGEIK 230
Query: 493 ATMFNDECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDE 551
AT FN++C++++D++++ VYYISN C + A K+F+++ NDYE++F TVI ED+
Sbjct: 231 ATGFNEQCDQYYDLLQEGSVYYISNPCKVGMAKKQFTNLPNDYELTFERD-TVIEKAEDQ 289
Query: 552 VGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ 611
N+P V+Y F ++ + + D +DV+GV D E+S + K+ K Y KR++TLVD
Sbjct: 290 T-NVPQVRYNFCNIQELQSVEKDATVDVVGVLKDVGEVSQIVSKSTGKPYEKRELTLVDD 348
Query: 612 SQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM 653
S SV +T+WGK A+ FDAS + V+A K +VS+F G L +
Sbjct: 349 SNFSVRITIWGKSAQGFDASPESVVAFKGVKVSDFGGRSLSL 390
Score = 225 bits (573), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 120/329 (36%), Positives = 196/329 (59%), Gaps = 12/329 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+F+++ NDYE++F T VI ED+ N+P V+Y F ++ + + D +DV+GV
Sbjct: 262 AKKQFTNLPNDYELTFERDT-VIEKAEDQT-NVPQVRYNFCNIQELQSVEKDATVDVVGV 319
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D E+S + K+ K Y KR++TLVD S SV +T+WGK A+ FDAS + V+A K +
Sbjct: 320 LKDVGEVSQIVSKSTGKPYEKRELTLVDDSNFSVRITIWGKSAQGFDASPESVVAFKGVK 379
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGG--GAA 182
VS+F GG++LSL S +S++PDIP+ H+L+GW S+ N F + G+G G
Sbjct: 380 VSDF-GGRSLSLLSSGTMSVDPDIPDAHRLKGWHDSSGRNDAFATHNSMGSGLGAATGRP 438
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
++ +++D+QLGMG+K D+ +++ I + Y AC ++ CNKKV+D N+G +R
Sbjct: 439 NEDKVIVQVKDEQLGMGEKQDFFNLKATIVYIKQDTFAYPACRNEGCNKKVVDMNDGTWR 498
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE--DHPAL 300
C+KC+ + YR I+ V + D T+ +W++ F SI+G++A ++ E E D L
Sbjct: 499 CDKCDVSHDRPEYRYIMSVNVCDHTSQLWLSCFDEVGRSIMGMSADQLMELKEGGDEATL 558
Query: 301 KKAL----FTQYIFRLRAKLEHYNGTKKI 325
A + FR AK++ + +++I
Sbjct: 559 ANAFEAANCKKLAFRCSAKMDTFGESQRI 587
>gi|186512039|ref|NP_567576.2| replication factor A1 [Arabidopsis thaliana]
gi|332658747|gb|AEE84147.1| replication factor A1 [Arabidopsis thaliana]
Length = 784
Score = 229 bits (583), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 172/605 (28%), Positives = 275/605 (45%), Gaps = 160/605 (26%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG ++ ML T LN+++ +GTL +IV++ R++ + R ++I+ +L +
Sbjct: 51 LSDGTYLHQ-GMLGTDLNNLVKEGTLQPGSIVRLTRFVGDVIKG-----RRIVIVPQLEV 104
Query: 385 IKPGTEIGFKIGNPQPLNTNTDN------------------------------------- 407
+K ++I IG+P P + D
Sbjct: 105 LKQISDI---IGHPVPGGKHNDQRGADSGIKFNTTEQQGSGIRQVNNIEPGRSNAAISPQ 161
Query: 408 ----------SSTQQTPAATNTNGSNGV------------------------HNNVAIPR 433
S+T T A +N + NGV N + R
Sbjct: 162 VGGTGSSVPASTTPSTRAYSNPSSGNGVTRQDYARDPPTSYPHQPQPPPPMYANRGPVAR 221
Query: 434 QASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIR 492
+ P + P+ +LSPY +WTIKARVTNK +++++N RG GK+F+ DLLD + GEIR
Sbjct: 222 NEAPPKII--PVNALSPYSGRWTIKARVTNKAALKQYSNPRGEGKVFNFDLLDADGGEIR 279
Query: 493 ATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEV 552
T FN ++F+D I +Y IS +L+PA K F+ + NDYE+ +++T+ C E++
Sbjct: 280 VTCFNAVADQFYDQIVVGNLYLISRGSLRPAQKNFNHLRNDYEIMLDNASTIKQCYEEDA 339
Query: 553 GNMPSVKYCFVPLKTIAEISPDEN---IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLV 609
+P ++ F +TI +I EN +DV+G+ + ++T K T KR + L
Sbjct: 340 A-IPRHQFHF---RTIGDIESMENNCIVDVIGIVSSISPTVTITRKNGTAT-PKRSLQLK 394
Query: 610 DQSQASVTMTLWGK----EAETF----DASNKPVIAVKAARVSEFQGNLL---------- 651
D S SV +T+WG E + D+ PV+AVKA R+SEF G +
Sbjct: 395 DMSGRSVEVTMWGDFCNAEGQRLQSLCDSGVFPVLAVKAGRISEFNGKTVSTIGSSQLFI 454
Query: 652 -------------------------LMRE---------------IQDQQLGMGDKADYCS 671
L RE I+D++LG +K D+ +
Sbjct: 455 DPDFVEAEKLKNWFEREGKSVPCISLSREFSGSGKVDVRKTISQIKDEKLGTSEKPDWIT 514
Query: 672 VRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
V I + N Y ACP + C+KKV D +G +RCEKC+K + YR IL +
Sbjct: 515 VSATILYLKFDNFCYTACPIMNGDRPCSKKVTDNGDGTWRCEKCDKSVDECDYRYILQLQ 574
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-------ALKKALFTQYIFRLRAK 780
I D T+ VT FQ E I+G++A+++ +H ++K FT+Y F+L+ K
Sbjct: 575 IQDHTDLTCVTAFQEAGEEIMGISAKDLYYVKNEHKDEEKFEDIIRKVAFTKYNFKLKVK 634
Query: 781 LEHYN 785
E ++
Sbjct: 635 EETFS 639
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 112/343 (32%), Positives = 180/343 (52%), Gaps = 29/343 (8%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN---ID 61
PA K F+ + NDYE+ +++T+ C E++ +P ++ F +TI +I EN +D
Sbjct: 309 PAQKNFNHLRNDYEIMLDNASTIKQCYEEDAA-IPRHQFHF---RTIGDIESMENNCIVD 364
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK----EAETF----DA 113
V+G+ + ++T K T KR + L D S SV +T+WG E + D+
Sbjct: 365 VIGIVSSISPTVTITRKNGTAT-PKRSLQLKDMSGRSVEVTMWGDFCNAEGQRLQSLCDS 423
Query: 114 SNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQR 173
PV+AVKA R+SEF G KT+S SS L ++PD E KL+ WF + + +S
Sbjct: 424 GVFPVLAVKAGRISEFNG-KTVSTIGSSQLFIDPDFVEAEKLKNWFEREGKS-VPCISLS 481
Query: 174 TGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDC 229
G G + +I+D++LG +K D+ +V I + N Y ACP + C
Sbjct: 482 REFSGSGKVDVRKTISQIKDEKLGTSEKPDWITVSATILYLKFDNFCYTACPIMNGDRPC 541
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
+KKV D +G +RCEKC+K + YR IL + I D T+ VT FQ E I+G++A++
Sbjct: 542 SKKVTDNGDGTWRCEKCDKSVDECDYRYILQLQIQDHTDLTCVTAFQEAGEEIMGISAKD 601
Query: 290 VGESTEDHP-------ALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ +H ++K FT+Y F+L+ K E ++ +++
Sbjct: 602 LYYVKNEHKDEEKFEDIIRKVAFTKYNFKLKVKEETFSDEQRV 644
>gi|402222443|gb|EJU02510.1| hypothetical protein DACRYDRAFT_78925 [Dacryopinax sp. DJM-731 SS1]
Length = 602
Score = 229 bits (583), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 168/541 (31%), Positives = 258/541 (47%), Gaps = 97/541 (17%)
Query: 325 IPDGVNINSFAMLATQLNDII------TDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLI 378
I DG + AMLATQLN + T L + ++++++++ +S S N+ ++I
Sbjct: 47 ISDGQHFTQ-AMLATQLNHLTDRPEEDTPAELDKNSVIKLEKF-----ASNSVQNKRLII 100
Query: 379 ILELNIIKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAAT----------NTNGSNGVHNN 428
+L+L+I+ G KIGNP + S Q A + + G +
Sbjct: 101 LLDLSIL---GNAGQKIGNPTSYDVAKAESHAQAISAPAPAAPPITVQKSHQPAPGGTRS 157
Query: 429 VAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDES 488
++P+ P+ PI LSPYQNKWTIKARVTNK+ IR W+N +G GKLFS L+DE+
Sbjct: 158 ASMPKNG-GPIF---PIEGLSPYQNKWTIKARVTNKSDIRHWSNQKGEGKLFSFTLMDET 213
Query: 489 GEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
EIRAT FN + + F+DMI++ KVY+ S + PA ++F++++N YE++F +T V PC
Sbjct: 214 SEIRATAFNQQVDEFYDMIQEGKVYFFSKGRIGPAKRQFNNVSNLYEITFERNTEVEPCL 273
Query: 549 EDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITL 608
+ G++P VKY FV L+ + E+ D DV+GV + EL + K ++ KRDI++
Sbjct: 274 --DAGDVPEVKYQFVTLEGLQEVPKDATCDVIGVVTEVGELGEILAKATGRSVPKRDISI 331
Query: 609 VDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKAD 668
VD+S +TLWGK ETF A ++P+IA K RVS+F G L + + D D
Sbjct: 332 VDRSGFFCRLTLWGKSGETFQAPDQPIIAFKGVRVSDFNGRSLSFQSSSQMSIN-PDIPD 390
Query: 669 YCSVRGIIQVFRGSNTTYKACPSQDCNKKVID---------------------------- 700
+RG G+N + S D
Sbjct: 391 AHQLRGWYDSI-GNNQPHHTFSSAAGAGAGGDRGQFNRNELKTIAQVKDEGLGMGEKNDF 449
Query: 701 -----------QNNGMY---RCEKCNKE-----------------FNTFTYRLILPVMIG 729
Q N +Y R EKCNK+ F+ YR +L + +
Sbjct: 450 FTTKASVIHVKQENFVYPACRSEKCNKKVVQTSDGRWECVSCGLTFDEPEYRYLLSISVA 509
Query: 730 DWTNSVWVTLFQNEAESILGVTA---QEVGESTEDH--PALKKALFTQYIFRLRAKLEHY 784
D T W++ F + + + + A Q + ++ E H + Y F RA+ + Y
Sbjct: 510 DHTGQAWLSAFNDAGDMLFEMKAGELQNLKDTDETHFSKVMSDVRSKMYNFSCRARQDTY 569
Query: 785 N 785
N
Sbjct: 570 N 570
Score = 208 bits (530), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 111/333 (33%), Positives = 183/333 (54%), Gaps = 14/333 (4%)
Query: 4 APANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVL 63
PA ++F++++N YE++F +T V PC + G++P VKY FV L+ + E+ D DV+
Sbjct: 246 GPAKRQFNNVSNLYEITFERNTEVEPCLD--AGDVPEVKYQFVTLEGLQEVPKDATCDVI 303
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKA 123
GV + EL + K ++ KRDI++VD+S +TLWGK ETF A ++P+IA K
Sbjct: 304 GVVTEVGELGEILAKATGRSVPKRDISIVDRSGFFCRLTLWGKSGETFQAPDQPIIAFKG 363
Query: 124 ARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST----QTNTRFEPVSQRTGGMGG 179
RVS+F G++LS SS +S+NPDIP+ H+L+GW+ + Q + F + G
Sbjct: 364 VRVSDF-NGRSLSFQSSSQMSINPDIPDAHQLRGWYDSIGNNQPHHTFSSAAGAGAGGDR 422
Query: 180 GA--AGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQN 237
G L + +++D+ LGMG+K D+ + + + + N Y AC S+ CNKKV+ +
Sbjct: 423 GQFNRNELKTIAQVKDEGLGMGEKNDFFTTKASVIHVKQENFVYPACRSEKCNKKVVQTS 482
Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA---QEVGEST 294
+G + C C F+ YR +L + + D T W++ F + + + + A Q + ++
Sbjct: 483 DGRWECVSCGLTFDEPEYRYLLSISVADHTGQAWLSAFNDAGDMLFEMKAGELQNLKDTD 542
Query: 295 EDH--PALKKALFTQYIFRLRAKLEHYNGTKKI 325
E H + Y F RA+ + YN K+
Sbjct: 543 ETHFSKVMSDVRSKMYNFSCRARQDTYNDQTKV 575
>gi|449456771|ref|XP_004146122.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Cucumis sativus]
Length = 861
Score = 229 bits (583), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 149/459 (32%), Positives = 230/459 (50%), Gaps = 85/459 (18%)
Query: 400 PLNTNT---DNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWT 456
PLN+N QQ P+ + G + N A PR PI +L+PYQ +WT
Sbjct: 231 PLNSNAYARPQPIYQQPPSMYSNRGP--IAKNEAAPR--------IMPISALNPYQGRWT 280
Query: 457 IKARVTNKTPIREWNNARGSGKLFSIDLLDE-SGEIRATMFNDECNRFHDMIEKDKVYYI 515
IKARVT+K +R +NN RG GK+FS DLLD GEIR T FN ++F++ IE KVY+I
Sbjct: 281 IKARVTSKGELRHYNNPRGDGKVFSFDLLDAYRGEIRVTCFNTVADQFYNQIESGKVYFI 340
Query: 516 SNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDE 575
S +LKPA K F+ + NDYE+ +++T+ PC ED+ ++P ++ F + I + +
Sbjct: 341 SKGSLKPAQKNFNHLKNDYEIFLENTSTIQPCFEDDQ-SIPQQQFHFHQIGEIEGMDSNS 399
Query: 576 NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK--EAE------T 627
+DV+GV +S+ K +T KR + L D S SV +TLWG +AE
Sbjct: 400 VVDVIGVVSSINPATSLMRKNGTET-QKRSLQLKDMSGRSVELTLWGNFCQAEGQRLQNM 458
Query: 628 FDASNKPVIAVKAARVSEFQGNLL------------------------------------ 651
D+ PV+AVK++RVS+F G +
Sbjct: 459 CDSGLFPVLAVKSSRVSDFNGKAVGTISTSQLFIEPDFPEAHSLREWFEREGRSTLSVSI 518
Query: 652 --------------LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQD 693
+ +I+D++LG +K D+ +V + + + Y ACP +
Sbjct: 519 SREVASVGRTDVRKTISQIKDERLGTSEKPDWITVSATVSFIKVDSFCYTACPIMIGDRQ 578
Query: 694 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 753
C+KKV + +G +RC++C++ + YR IL + I D T WVT FQ E I+G+ A+
Sbjct: 579 CSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAK 638
Query: 754 EV----GESTEDHP---ALKKALFTQYIFRLRAKLEHYN 785
+ E +D ++K LFT++I +L+ K E ++
Sbjct: 639 RLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFS 677
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/341 (30%), Positives = 180/341 (52%), Gaps = 25/341 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K F+ + NDYE+ +++T+ PC ED+ ++P ++ F + I + + +DV+G
Sbjct: 347 PAQKNFNHLKNDYEIFLENTSTIQPCFEDDQ-SIPQQQFHFHQIGEIEGMDSNSVVDVIG 405
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK--EAE------TFDASNK 116
V +S+ K +T KR + L D S SV +TLWG +AE D+
Sbjct: 406 VVSSINPATSLMRKNGTET-QKRSLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGLF 464
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFE-PVSQRTG 175
PV+AVK++RVS+F G ++S S + + PD PE H L+ WF + + +S+
Sbjct: 465 PVLAVKSSRVSDFNGKAVGTISTSQLF-IEPDFPEAHSLREWFEREGRSTLSVSISREVA 523
Query: 176 GMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNK 231
+G + +I+D++LG +K D+ +V + + + Y ACP + C+K
Sbjct: 524 SVGRTDVRKTI--SQIKDERLGTSEKPDWITVSATVSFIKVDSFCYTACPIMIGDRQCSK 581
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV- 290
KV + +G +RC++C++ + YR IL + I D T WVT FQ E I+G+ A+ +
Sbjct: 582 KVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLY 641
Query: 291 ---GESTEDHP---ALKKALFTQYIFRLRAKLEHYNGTKKI 325
E +D ++K LFT++I +L+ K E ++ +++
Sbjct: 642 YLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRV 682
Score = 42.4 bits (98), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 9/74 (12%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG + ML TQLN+++ G L + +IV++++Y+ + V R ++I++EL++
Sbjct: 55 VSDGTHFQQ-GMLGTQLNELVKSGKLQKGSIVRLRQYVCNPVQ-----ERLIIIVIELDV 108
Query: 385 IKPGTEIGFKIGNP 398
I+ +I IG P
Sbjct: 109 IEEMCDI---IGEP 119
>gi|302421690|ref|XP_003008675.1| replication factor-A protein [Verticillium albo-atrum VaMs.102]
gi|261351821|gb|EEY14249.1| replication factor-A protein [Verticillium albo-atrum VaMs.102]
Length = 609
Score = 229 bits (583), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 136/342 (39%), Positives = 204/342 (59%), Gaps = 26/342 (7%)
Query: 330 NINSF--AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKP 387
+IN++ +M+ATQ+N +I DG L + +V++ +Y S +++LIIL L +I P
Sbjct: 57 DINNYVQSMMATQVNHVIHDGQLVKNCLVRVTQY-----QPNSVKGKNILIILGLEVI-P 110
Query: 388 GTEIGFKIGNP---QPLNT-------NTDNSSTQ-QTPAATNTNGSNGVHNNVAIPRQAS 436
KIG+P +PL NT N+ Q Q IP ++
Sbjct: 111 ELGTPEKIGDPLAFEPLPEGAAPNAGNTGNAPIQGQNFYGAKKEEEKEKPRISQIPSRSV 170
Query: 437 APVVQ----THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIR 492
A +PI +LSPY +KWTIKARVT K+ IR W+ G GKLFS++LLDESGEI+
Sbjct: 171 AGTSHGSSNIYPIEALSPYAHKWTIKARVTQKSDIRTWHKPSGEGKLFSVNLLDESGEIK 230
Query: 493 ATMFNDECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDE 551
AT FN++C++++D++++ VYYISN C + A K+F+++ NDYE++F TVI ED+
Sbjct: 231 ATGFNEQCDQYYDLLQEGSVYYISNPCKVGMAKKQFTNLPNDYELTFERD-TVIEKAEDQ 289
Query: 552 VGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ 611
N+P V+Y F ++ + + D +DV+GV D E+S + K+ K Y KR++TLVD
Sbjct: 290 T-NVPQVRYNFCNIQELQSVEKDATVDVVGVLKDVGEVSQIVSKSTGKPYEKRELTLVDD 348
Query: 612 SQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM 653
S SV +T+WGK A+ FDAS + V+A K +VS+F G L +
Sbjct: 349 SNFSVRITIWGKSAQGFDASPESVVAFKGVKVSDFGGRSLSL 390
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 181/290 (62%), Gaps = 6/290 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+F+++ NDYE++F T VI ED+ N+P V+Y F ++ + + D +DV+GV
Sbjct: 262 AKKQFTNLPNDYELTFERDT-VIEKAEDQT-NVPQVRYNFCNIQELQSVEKDATVDVVGV 319
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D E+S + K+ K Y KR++TLVD S SV +T+WGK A+ FDAS + V+A K +
Sbjct: 320 LKDVGEVSQIVSKSTGKPYEKRELTLVDDSNFSVRITIWGKSAQGFDASPESVVAFKGVK 379
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGG--GAA 182
VS+F GG++LSL S +S++PDIP+ H+L+GW+ S+ N F + G+G G
Sbjct: 380 VSDF-GGRSLSLLSSGTMSVDPDIPDAHRLKGWYDSSGRNDAFATHNSMGSGLGAATGRP 438
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
++ +++D+QLGMG+K D+ +++ I + Y AC ++ CNKKV+D N+G +R
Sbjct: 439 DEDKVVVQVKDEQLGMGEKQDFFNLKATIVYIKQDTFAYPACRNEGCNKKVVDMNDGTWR 498
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE 292
C+KC+ + YR I+ V + D T+ +W++ F SI+G++A ++ E
Sbjct: 499 CDKCDVSHDRPEYRYIMSVNVCDHTSQLWLSCFDEVGRSIMGMSADQLME 548
>gi|401885437|gb|EJT49554.1| hypothetical protein A1Q1_01298 [Trichosporon asahii var. asahii
CBS 2479]
Length = 387
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 133/347 (38%), Positives = 195/347 (56%), Gaps = 28/347 (8%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
+MLATQLN ++ + L + T++++ ++++ V NR ++IIL L + G K
Sbjct: 61 SMLATQLNHLVENDELEKNTVIKLTSFVINTVQ-----NRKLIIILAL---ERQNWNGQK 112
Query: 395 IGNPQPLNTNTDNSSTQQTPAA---TNTNGSNGVHNNV---AIPRQASAPVVQTHPIVSL 448
+GNP ++ P A TN S G +N A PR S + PI L
Sbjct: 113 VGNPVNVDQRAAGGVASPAPEAAPVTNGAASRGGASNARPAAAPRGPSRDMGPIFPIEGL 172
Query: 449 SPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIE 508
SP WTIKARVT K+ I+ W+N RG GKLFS+ L+DE+GEIRAT FND+ + F+ ++E
Sbjct: 173 SP----WTIKARVTQKSDIKHWSNQRGEGKLFSVTLMDETGEIRATGFNDQVDAFYQLLE 228
Query: 509 KDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI 568
+ KV++IS + A K+FS++NN+YE++F + T + P +P +KY F L +
Sbjct: 229 EGKVFFISKARINIAKKQFSNVNNEYEITFENQTEIEPS-------VPEIKYNFTKLNDL 281
Query: 569 AEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF 628
+ D DV+GV + +L +T K QK + KRDI LVDQS SV +TLWGK AE F
Sbjct: 282 ESLQKDATTDVIGVVQEVHDLGQITSKATQKPFNKRDIQLVDQSGQSVRLTLWGKTAENF 341
Query: 629 DASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKAD-YCSVRG 674
+ PV+A K +VS+F G L M + + D C++RG
Sbjct: 342 THYDHPVVAFKGVKVSDFGGRSLSM--FSSATMAINPNTDEACALRG 386
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 94/153 (61%), Gaps = 8/153 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++NN+YE++F + T + P +P +KY F L + + D DV+GV
Sbjct: 243 AKKQFSNVNNEYEITFENQTEIEPS-------VPEIKYNFTKLNDLESLQKDATTDVIGV 295
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ +L +T K QK + KRDI LVDQS SV +TLWGK AE F + PV+A K +
Sbjct: 296 VQEVHDLGQITSKATQKPFNKRDIQLVDQSGQSVRLTLWGKTAENFTHYDHPVVAFKGVK 355
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGW 158
VS+F GG++LS+ S+ +++NP+ E L+GW
Sbjct: 356 VSDF-GGRSLSMFSSATMAINPNTDEACALRGW 387
>gi|50302901|ref|XP_451388.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640519|emb|CAH02976.1| KLLA0A08844p [Kluyveromyces lactis]
Length = 621
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 131/447 (29%), Positives = 222/447 (49%), Gaps = 83/447 (18%)
Query: 398 PQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTI 457
PQP + P A + NGS+ Q S P+ I +SPYQN WTI
Sbjct: 167 PQP----------RSVPKAKSNNGSS----------QNSRPIF---AIEQISPYQNNWTI 203
Query: 458 KARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISN 517
KARV+ K +++W N RG G + +++LLD SGEIRAT FND +F++++++ K Y++S
Sbjct: 204 KARVSFKGDLKKWQNNRGEGHILNVNLLDSSGEIRATAFNDNAIKFNEILQEGKAYFVSK 263
Query: 518 CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI 577
++PA +FS++ + YE+S V C ++ ++P + + F+ L + + + I
Sbjct: 264 ARVQPAKPQFSNLKHPYELSLERDCVVEECMNEDANDVPEMHFNFIKLNDVNNVEKNTAI 323
Query: 578 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIA 637
DV+G+ + K+ +K + +RD+ +VD S A +++ LWG++A F+ V+A
Sbjct: 324 DVVGILKSVGPHFELAAKSGKK-FDRRDVEIVDDSGACISLGLWGEQAIKFNLPEGSVVA 382
Query: 638 VKAARVSEFQGNLLLM-------------------------------REIQDQQLGMGDK 666
+K RV++F G L M + ++ + G D
Sbjct: 383 LKGVRVTDFNGKSLSMGNTSSLFANPDIQEAYTLKGWYDANASNTTFKALKTESGGGADT 442
Query: 667 ADYC-----------------------SVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNN 703
+ + SV+ + + N Y AC ++ C KKVI Q++
Sbjct: 443 SKFIADRTTIARAIESNLGRSEKGDYFSVKAAVSFLKVDNFAYPACLNEGCQKKVIMQSD 502
Query: 704 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH- 762
G +RCEKC+ YR +L + I D T +W+TLF ++AE ++GV+A E+ E E++
Sbjct: 503 GTWRCEKCDMNHPHPKYRYMLTISIMDQTGQIWLTLFNDQAEQLVGVSANELTELKENNN 562
Query: 763 ----PALKKALFTQYIFRLRAKLEHYN 785
+K +Y FR+RA+ ++YN
Sbjct: 563 QAFVALTQKVQMNEYDFRIRAREDNYN 589
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 107/330 (32%), Positives = 184/330 (55%), Gaps = 12/330 (3%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA +FS++ + YE+S V C ++ ++P + + F+ L + + + IDV+G
Sbjct: 268 PAKPQFSNLKHPYELSLERDCVVEECMNEDANDVPEMHFNFIKLNDVNNVEKNTAIDVVG 327
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+ + K+ +K + +RD+ +VD S A +++ LWG++A F+ V+A+K
Sbjct: 328 ILKSVGPHFELAAKSGKK-FDRRDVEIVDDSGACISLGLWGEQAIKFNLPEGSVVALKGV 386
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGGGA-- 181
RV++F G K+LS+ +S L NPDI E + L+GW+ + +NT F+ + +GG +
Sbjct: 387 RVTDFNG-KSLSMGNTSSLFANPDIQEAYTLKGWYDANASNTTFKALKTESGGGADTSKF 445
Query: 182 -AGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGM 240
A + R I+ LG +K DY SV+ + + N Y AC ++ C KKVI Q++G
Sbjct: 446 IADRTTIARAIE-SNLGRSEKGDYFSVKAAVSFLKVDNFAYPACLNEGCQKKVIMQSDGT 504
Query: 241 YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH--- 297
+RCEKC+ YR +L + I D T +W+TLF ++AE ++GV+A E+ E E++
Sbjct: 505 WRCEKCDMNHPHPKYRYMLTISIMDQTGQIWLTLFNDQAEQLVGVSANELTELKENNNQA 564
Query: 298 --PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+K +Y FR+RA+ ++YN +I
Sbjct: 565 FVALTQKVQMNEYDFRIRAREDNYNNETRI 594
>gi|115449015|ref|NP_001048287.1| Os02g0776800 [Oryza sativa Japonica Group]
gi|46805512|dbj|BAD16963.1| replication protein A 70kDa [Oryza sativa Japonica Group]
gi|46806154|dbj|BAD17384.1| replication protein A 70kDa [Oryza sativa Japonica Group]
gi|113537818|dbj|BAF10201.1| Os02g0776800 [Oryza sativa Japonica Group]
gi|125583873|gb|EAZ24804.1| hypothetical protein OsJ_08582 [Oryza sativa Japonica Group]
gi|215701492|dbj|BAG92916.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215715207|dbj|BAG94958.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 656
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 172/582 (29%), Positives = 272/582 (46%), Gaps = 133/582 (22%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG +S A+ A QL+D G L +IVQ+ Y+++ V R +++IL L +
Sbjct: 50 VSDGTAASS-ALFAAQLSDHARSGALRRGSIVQLSEYVINEVGP-----RRIIVILNLEV 103
Query: 385 IKPGTEIGFKIGNPQPLNT-------------------------NTDNSST--------- 410
+ EI IGNP L+ N+ N++T
Sbjct: 104 LVSECEI---IGNPTALSETGSPIPNPTRVEQFNGAPQYGLMAGNSSNTTTKPSDNVPLF 160
Query: 411 QQTPAATNTNGSNGVHNNVAI------PRQASAPVVQTH-------------PIVSLSPY 451
Q + A ++N + + V + P AP + H PI +L+PY
Sbjct: 161 QNSMAGNSSNFATRPSDKVPVFQPTVQPSYRPAPNYKNHGAIMKNEAPARIIPISALNPY 220
Query: 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKD 510
Q +W IKARVT K IR ++NA+G GK+FS DLLD + GEIR T FN +RF++++E
Sbjct: 221 QGRWAIKARVTAKGDIRRYHNAKGDGKVFSFDLLDSDGGEIRVTCFNALLDRFYEVVEVG 280
Query: 511 KVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE 570
KVY +S L+PA K ++ +NN++E+ + +TV C DE ++P+ ++ F P+ I +
Sbjct: 281 KVYVVSRGNLRPAQKNYNHLNNEWEILLENGSTVDLC-PDENSSIPTQRFDFRPINEIED 339
Query: 571 ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEAE 626
+ +D++GV +++ K +T KR + L D S SV +T+WG +E
Sbjct: 340 AQNNAILDIIGVVTSVNPCTTIQRKNGMET-QKRTMNLKDMSGRSVEVTMWGDFCNREGS 398
Query: 627 TFDASNK----PVIAVKAARVSEFQGNLL------------------------------- 651
+ PV+AVKA +VS+F G +
Sbjct: 399 QLQGMVERGIFPVLAVKAGKVSDFSGKSVGTISSTQLFINPDSAEAHSLRQWFDSGGRDA 458
Query: 652 ----LMREI----------------QDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS 691
+ R+I +D+ LGMGDK D+ +V+ + F+ + Y ACP+
Sbjct: 459 STQSISRDITPGASRNEIRKTVAQIKDEGLGMGDKPDWITVKATVIFFKNESFFYTACPN 518
Query: 692 ----QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESI 747
+ CNKKV NG + C+KC++EF YR +L I D + + WVT FQ + +
Sbjct: 519 MIGDRQCNKKVTKSTNGNWTCDKCDREFEECDYRYLLQFQIQDHSGTAWVTAFQEAGQEL 578
Query: 748 LGVTAQEVGESTE-DHP----ALKKALFTQYIFRLRAKLEHY 784
LG +A E+ E + P + LF +Y+ RL+ K E Y
Sbjct: 579 LGCSATELNALKEREDPRFADTMLNCLFQEYLLRLKVKEESY 620
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 182/347 (52%), Gaps = 38/347 (10%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K ++ +NN++E+ + +TV C DE ++P+ ++ F P+ I + + +D++G
Sbjct: 292 PAQKNYNHLNNEWEILLENGSTVDLC-PDENSSIPTQRFDFRPINEIEDAQNNAILDIIG 350
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEAETFDASNK---- 116
V +++ K +T KR + L D S SV +T+WG +E +
Sbjct: 351 VVTSVNPCTTIQRKNGMET-QKRTMNLKDMSGRSVEVTMWGDFCNREGSQLQGMVERGIF 409
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-------STQTNTRFEP 169
PV+AVKA +VS+F G K++ S+ L +NPD E H L+ WF STQ+ +R
Sbjct: 410 PVLAVKAGKVSDFSG-KSVGTISSTQLFINPDSAEAHSLRQWFDSGGRDASTQSISR--- 465
Query: 170 VSQRTGGMGGGAAGNLL--LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS- 226
+ GA+ N + + +I+D+ LGMGDK D+ +V+ + F+ + Y ACP+
Sbjct: 466 ------DITPGASRNEIRKTVAQIKDEGLGMGDKPDWITVKATVIFFKNESFFYTACPNM 519
Query: 227 ---QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL 283
+ CNKKV NG + C+KC++EF YR +L I D + + WVT FQ + +L
Sbjct: 520 IGDRQCNKKVTKSTNGNWTCDKCDREFEECDYRYLLQFQIQDHSGTAWVTAFQEAGQELL 579
Query: 284 GVTAQEVGESTE-DHP----ALKKALFTQYIFRLRAKLEHYNGTKKI 325
G +A E+ E + P + LF +Y+ RL+ K E Y +K+
Sbjct: 580 GCSATELNALKEREDPRFADTMLNCLFQEYLLRLKVKEESYGDERKV 626
>gi|344303316|gb|EGW33590.1| hypothetical protein SPAPADRAFT_135958 [Spathaspora passalidarum
NRRL Y-27907]
Length = 626
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 135/423 (31%), Positives = 212/423 (50%), Gaps = 74/423 (17%)
Query: 435 ASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRAT 494
AS ++ PI ++SPYQN WTIKARV+ K +R W+NA+G+G+LFS++ LDES EI+AT
Sbjct: 173 ASGAPIRITPIETISPYQNNWTIKARVSYKGDLRTWSNAKGTGQLFSVNFLDESDEIKAT 232
Query: 495 MFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN 554
FN+ R ++++E+ KVYYIS + A KKF+ + + YE++ T + C ++ N
Sbjct: 233 AFNETAERAYNLLEEGKVYYISKARVAAAKKKFNHLTHPYEITMEKDTEITECFDN--TN 290
Query: 555 MPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA 614
+P + + FV L I ++ + +DV+G E +T K+ K + +R+IT+VD++
Sbjct: 291 VPKLHFNFVKLNKIQDLESNAIVDVIGALKIVNEPFKITAKSTGKEFDRRNITIVDETGF 350
Query: 615 SVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM--------------------- 653
++ M LW A F+ +IA K +V ++ G L +
Sbjct: 351 AIEMGLWNNTAVEFNIEQGSIIAFKGCKVQDYNGRSLTLTQQGSVIPNPESPEAYQLKGW 410
Query: 654 -------------------------------REIQDQQLGMGDKADYCSVRGIIQVFRGS 682
+ QD+ LG G+K DY +V+ I +
Sbjct: 411 YDNQGINESFKSLKVESSGASSNQIENRKSIAQAQDENLGKGEKPDYFTVKATISYTKPD 470
Query: 683 NTTYKAC--------------PSQDCNKKVIDQ-NNGMYRCEKCNKEFNTFTYRLILPVM 727
Y AC PSQ CN+K+++Q +G +RCE+C+ + TYR I
Sbjct: 471 TFAYPACPNVVASNAGSQQARPSQPCNRKLVEQPTDGTWRCERCDINYPEPTYRYIYNCS 530
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGE-STEDHPALKKAL----FTQYIFRLRAKLE 782
I D T +WVTLF NEA + G+ A E+ + ED + + F +Y FRLRA+ +
Sbjct: 531 ILDETGQIWVTLFDNEARKLFGIDAGELTKIKEEDQDEFTRRIEDISFKEYQFRLRARQD 590
Query: 783 HYN 785
YN
Sbjct: 591 TYN 593
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 173/337 (51%), Gaps = 24/337 (7%)
Query: 10 FSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDA 69
F+ + + YE++ T + C ++ N+P + + FV L I ++ + +DV+G
Sbjct: 265 FNHLTHPYEITMEKDTEITECFDN--TNVPKLHFNFVKLNKIQDLESNAIVDVIGALKIV 322
Query: 70 AELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEF 129
E +T K+ K + +R+IT+VD++ ++ M LW A F+ +IA K +V ++
Sbjct: 323 NEPFKITAKSTGKEFDRRNITIVDETGFAIEMGLWNNTAVEFNIEQGSIIAFKGCKVQDY 382
Query: 130 QGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAGNLLLM 188
G++L+L+ + NP+ PE ++L+GW+ Q N F+ + + G N +
Sbjct: 383 -NGRSLTLTQQGSVIPNPESPEAYQLKGWYDNQGINESFKSLKVESSGASSNQIENRKSI 441
Query: 189 REIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKAC--------------PSQDCNKKVI 234
+ QD+ LG G+K DY +V+ I + Y AC PSQ CN+K++
Sbjct: 442 AQAQDENLGKGEKPDYFTVKATISYTKPDTFAYPACPNVVASNAGSQQARPSQPCNRKLV 501
Query: 235 DQ-NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE- 292
+Q +G +RCE+C+ + TYR I I D T +WVTLF NEA + G+ A E+ +
Sbjct: 502 EQPTDGTWRCERCDINYPEPTYRYIYNCSILDETGQIWVTLFDNEARKLFGIDAGELTKI 561
Query: 293 STEDHPALKKAL----FTQYIFRLRAKLEHYNGTKKI 325
ED + + F +Y FRLRA+ + YN ++
Sbjct: 562 KEEDQDEFTRRIEDISFKEYQFRLRARQDTYNDQLRV 598
>gi|190688746|gb|ACE86409.1| replication protein A1-like protein [Sorghum bicolor]
Length = 993
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 139/412 (33%), Positives = 207/412 (50%), Gaps = 72/412 (17%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNR 502
P+ L+PYQ +W I ARVT KT +R ++N+RG GK+FS DLLD + GEIRAT FN + ++
Sbjct: 484 PVAQLNPYQTRWKIMARVTAKTDLRHYSNSRGPGKVFSFDLLDGQGGEIRATCFNVQADQ 543
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F D+IE DKVY IS LKPA KKF+S+N++YE++ H T++ C +D+ N+P +Y F
Sbjct: 544 FFDLIEVDKVYLISKGLLKPAMKKFNSLNHEYEVTLDHRTSIEVCVDDD-SNIPRQQYNF 602
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
+ I I +D++G+ S V K +T KR + L D S S+ + LWG
Sbjct: 603 RQISEIENIEAGAIVDLIGIVTSVGPSSIVMRKDGTQT-QKRTLQLKDMSFRSLEIILWG 661
Query: 623 K--EAE------TFDASNKPVIAVKAARVSEFQGN------------------------- 649
K +AE D+ + P++++K RV +F G
Sbjct: 662 KFCDAEGRQLQLLCDSGSNPILSLKGGRVCDFSGRSVVTISSTQLKVNPDFQVAERLKQW 721
Query: 650 -------------------------LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNT 684
L + +I+D+ LG DK D+ +V+G I + N
Sbjct: 722 YIIEGKNTAFISLSWGISNMSRSHVLKTIAQIKDENLGRSDKPDFITVKGAISHLKTDNF 781
Query: 685 TYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLF 740
Y AC + CNKKV++ +G ++C+KCNK F YR +L I D T + T F
Sbjct: 782 CYPACTMEVNGRLCNKKVMNNGDGTWQCDKCNKSLPNFEYRYLLLCQIQDHTGVTYATAF 841
Query: 741 QNEAESILGVTAQEV-------GESTEDHPALKKALFTQYIFRLRAKLEHYN 785
Q E+I G TAQE+ + ++ L +Y+F+L+ E YN
Sbjct: 842 QAAGEAIFGHTAQELFMIQNVEQDDMRFTEIMQAVLRREYLFKLKIYEETYN 893
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/344 (31%), Positives = 177/344 (51%), Gaps = 25/344 (7%)
Query: 2 LAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENID 61
L PA KKF+S+N++YE++ H T++ C +D+ N+P +Y F + I I +D
Sbjct: 560 LLKPAMKKFNSLNHEYEVTLDHRTSIEVCVDDD-SNIPRQQYNFRQISEIENIEAGAIVD 618
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK--EAE------TFDA 113
++G+ S V K +T KR + L D S S+ + LWGK +AE D+
Sbjct: 619 LIGIVTSVGPSSIVMRKDGTQT-QKRTLQLKDMSFRSLEIILWGKFCDAEGRQLQLLCDS 677
Query: 114 SNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQ 172
+ P++++K RV +F G +++S S+ L +NPD +L+ W+ + NT F +S
Sbjct: 678 GSNPILSLKGGRVCDFSGRSVVTIS-STQLKVNPDFQVAERLKQWYIIEGKNTAFISLSW 736
Query: 173 RTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQD 228
M L + +I+D+ LG DK D+ +V+G I + N Y AC +
Sbjct: 737 GISNMSRSHV--LKTIAQIKDENLGRSDKPDFITVKGAISHLKTDNFCYPACTMEVNGRL 794
Query: 229 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 288
CNKKV++ +G ++C+KCNK F YR +L I D T + T FQ E+I G TAQ
Sbjct: 795 CNKKVMNNGDGTWQCDKCNKSLPNFEYRYLLLCQIQDHTGVTYATAFQAAGEAIFGHTAQ 854
Query: 289 EV-------GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
E+ + ++ L +Y+F+L+ E YNG +++
Sbjct: 855 ELFMIQNVEQDDMRFTEIMQAVLRREYLFKLKIYEETYNGEQRV 898
>gi|13536993|dbj|BAB40712.1| replication protein A 70kDa [Oryza sativa Japonica Group]
Length = 654
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 172/582 (29%), Positives = 272/582 (46%), Gaps = 133/582 (22%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG +S A+ A QL+D G L +IVQ+ Y+++ V R +++IL L +
Sbjct: 48 VSDGTAASS-ALFAAQLSDHARSGALRRGSIVQLSEYVINEVGP-----RRIIVILNLEV 101
Query: 385 IKPGTEIGFKIGNPQPLNT-------------------------NTDNSST--------- 410
+ EI IGNP L+ N+ N++T
Sbjct: 102 LVSECEI---IGNPTALSETGSPIPNPTRVEQFNGAPQYGLMAGNSSNTTTKPSDNVPLF 158
Query: 411 QQTPAATNTNGSNGVHNNVAI------PRQASAPVVQTH-------------PIVSLSPY 451
Q + A ++N + + V + P AP + H PI +L+PY
Sbjct: 159 QNSMAGNSSNFATRPSDKVPVFQPTVQPSYRPAPNYKNHGAIMKNEAPARIIPISALNPY 218
Query: 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKD 510
Q +W IKARVT K IR ++NA+G GK+FS DLLD + GEIR T FN +RF++++E
Sbjct: 219 QGRWAIKARVTAKGDIRRYHNAKGDGKVFSFDLLDSDGGEIRVTCFNALLDRFYEVVEVG 278
Query: 511 KVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE 570
KVY +S L+PA K ++ +NN++E+ + +TV C DE ++P+ ++ F P+ I +
Sbjct: 279 KVYVVSRGNLRPAQKNYNHLNNEWEILLENGSTVDLC-PDENSSIPTQRFDFRPINEIED 337
Query: 571 ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEAE 626
+ +D++GV +++ K +T KR + L D S SV +T+WG +E
Sbjct: 338 AQNNAILDIIGVVTSVNPCTTIQRKNGMET-QKRTMNLKDMSGRSVEVTMWGDFCNREGS 396
Query: 627 TFDASNK----PVIAVKAARVSEFQGNLL------------------------------- 651
+ PV+AVKA +VS+F G +
Sbjct: 397 QLQGMVERGIFPVLAVKAGKVSDFSGKSVGTISSTQFFINPDSAEAHSLRQWFDSGGRDA 456
Query: 652 ----LMREI----------------QDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS 691
+ R+I +D+ LGMGDK D+ +V+ + F+ + Y ACP+
Sbjct: 457 FTQSISRDITPGASRNEIRKTVAQIKDEGLGMGDKPDWITVKATVIFFKNESFFYTACPN 516
Query: 692 ----QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESI 747
+ CNKKV NG + C+KC++EF YR +L I D + + WVT FQ + +
Sbjct: 517 MIGDRQCNKKVTKSTNGNWTCDKCDREFEECDYRYLLQFQIQDHSGTAWVTAFQEAGQEL 576
Query: 748 LGVTAQEVGESTE-DHP----ALKKALFTQYIFRLRAKLEHY 784
LG +A E+ E + P + LF +Y+ RL+ K E Y
Sbjct: 577 LGCSATELNALKEREDPRFADTMLNCLFQEYLLRLKVKEESY 618
Score = 175 bits (444), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 108/340 (31%), Positives = 178/340 (52%), Gaps = 24/340 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K ++ +NN++E+ + +TV C DE ++P+ ++ F P+ I + + +D++G
Sbjct: 290 PAQKNYNHLNNEWEILLENGSTVDLC-PDENSSIPTQRFDFRPINEIEDAQNNAILDIIG 348
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEAETFDASNK---- 116
V +++ K +T KR + L D S SV +T+WG +E +
Sbjct: 349 VVTSVNPCTTIQRKNGMET-QKRTMNLKDMSGRSVEVTMWGDFCNREGSQLQGMVERGIF 407
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGG 176
PV+AVKA +VS+F G K++ S+ +NPD E H L+ WF + F R
Sbjct: 408 PVLAVKAGKVSDFSG-KSVGTISSTQFFINPDSAEAHSLRQWFDSGGRDAFTQSISRD-- 464
Query: 177 MGGGAAGNLL--LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS----QDCN 230
+ GA+ N + + +I+D+ LGMGDK D+ +V+ + F+ + Y ACP+ + CN
Sbjct: 465 ITPGASRNEIRKTVAQIKDEGLGMGDKPDWITVKATVIFFKNESFFYTACPNMIGDRQCN 524
Query: 231 KKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 290
KKV NG + C+KC++EF YR +L I D + + WVT FQ + +LG +A E+
Sbjct: 525 KKVTKSTNGNWTCDKCDREFEECDYRYLLQFQIQDHSGTAWVTAFQEAGQELLGCSATEL 584
Query: 291 GESTE-DHP----ALKKALFTQYIFRLRAKLEHYNGTKKI 325
E + P + LF +Y+ RL+ K E Y +K+
Sbjct: 585 NALKEREDPRFADTMLNCLFQEYLLRLKVKEESYGDERKV 624
>gi|326517527|dbj|BAK03682.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 654
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 168/568 (29%), Positives = 265/568 (46%), Gaps = 124/568 (21%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI---------- 384
AM A QL+D G + ++VQ+ Y+++ V R V+++L L +
Sbjct: 59 AMFAGQLSDQARSGLIRRGSVVQLDEYVINMVGG-----RRVIVVLNLTVLLAECDIIGN 113
Query: 385 --IKPGTE-----------------IGFKIGNPQPLNTNTDNSSTQQTPAATNTN----- 420
I P +E G GNP P N + Q + A ++ N
Sbjct: 114 PVITPESESSNQNNPKVEQFNGARQYGLAAGNPSPTRPNGNVPVFQPSVAGSSLNTPTRL 173
Query: 421 -GSNGVHNNVAIPRQASAPVVQTH-------------PIVSLSPYQNKWTIKARVTNKTP 466
+ V A P AP + PI SL+PYQ +W IK RVT K
Sbjct: 174 SDKSPVFQPTAQPSYRPAPSYKNQGAIAKNEAPARIIPISSLNPYQGRWAIKGRVTAKGD 233
Query: 467 IREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANK 525
IR ++NA+G GK+F+ DLLD + GEIR FN +RF++++E KVY +S LKPA +
Sbjct: 234 IRRYHNAKGDGKVFNFDLLDSDGGEIRVACFNAHVDRFYEVVEVGKVYVVSRGNLKPAQR 293
Query: 526 KFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCID 585
++ +N+++E++ ++V C DE ++PS ++ F P+ I + +D++GV I
Sbjct: 294 NYNHLNSEWEITLERDSSVDLC-PDEDSSIPSQQFNFRPISEIEDTPTGTVLDIIGVAIS 352
Query: 586 AAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEA----ETFDASNKPVIA 637
+ ++V K +T +KR I L D S SV +T+WG +E E + PV+
Sbjct: 353 VSPSTTVQKKNGTET-LKRIIGLKDMSGRSVDLTMWGDFCNREGSQLQEMVERGVFPVLG 411
Query: 638 VKAARVSEFQG---------NLLL------------------------------------ 652
VK RV++F G LL+
Sbjct: 412 VKTGRVNDFNGKCIGTISSSQLLIDPDLSEAHTLRQWFDGGGRDASTQSISRDHTPAASR 471
Query: 653 ------MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD----CNKKVIDQN 702
+ +I+D+ LGMGDK D+ +V+ I F+ N Y ACP+++ CNKKV
Sbjct: 472 NEVRMTIAKIKDEGLGMGDKPDWVTVKASIIFFKSDNFCYTACPTKEGDRQCNKKVTKGT 531
Query: 703 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED- 761
+G++ C++C+KEF YR +L + I D + + WVT FQ A+ +LG +A ++ E+
Sbjct: 532 SGLWVCDRCDKEFPECDYRYLLQLQIQDHSGTAWVTAFQETAQELLGCSALDLITYKENG 591
Query: 762 HPALKK----ALFTQYIFRLRAKLEHYN 785
P + LF Y+ RL+ K E Y+
Sbjct: 592 DPRFAEIMLSCLFQDYLLRLKVKEETYS 619
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 110/346 (31%), Positives = 185/346 (53%), Gaps = 36/346 (10%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA + ++ +N+++E++ ++V C DE ++PS ++ F P+ I + +D++G
Sbjct: 290 PAQRNYNHLNSEWEITLERDSSVDLC-PDEDSSIPSQQFNFRPISEIEDTPTGTVLDIIG 348
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEA----ETFDASNK 116
V I + ++V K +T +KR I L D S SV +T+WG +E E +
Sbjct: 349 VAISVSPSTTVQKKNGTET-LKRIIGLKDMSGRSVDLTMWGDFCNREGSQLQEMVERGVF 407
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-------STQTNTR-FE 168
PV+ VK RV++F G K + SS L ++PD+ E H L+ WF STQ+ +R
Sbjct: 408 PVLGVKTGRVNDFNG-KCIGTISSSQLLIDPDLSEAHTLRQWFDGGGRDASTQSISRDHT 466
Query: 169 PVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD 228
P + R + + +I+D+ LGMGDK D+ +V+ I F+ N Y ACP+++
Sbjct: 467 PAASRNEVR--------MTIAKIKDEGLGMGDKPDWVTVKASIIFFKSDNFCYTACPTKE 518
Query: 229 ----CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILG 284
CNKKV +G++ C++C+KEF YR +L + I D + + WVT FQ A+ +LG
Sbjct: 519 GDRQCNKKVTKGTSGLWVCDRCDKEFPECDYRYLLQLQIQDHSGTAWVTAFQETAQELLG 578
Query: 285 VTAQEVGESTED-HPALKK----ALFTQYIFRLRAKLEHYNGTKKI 325
+A ++ E+ P + LF Y+ RL+ K E Y+ +++
Sbjct: 579 CSALDLITYKENGDPRFAEIMLSCLFQDYLLRLKVKEETYSDERRV 624
>gi|242086613|ref|XP_002439139.1| hypothetical protein SORBIDRAFT_09g001250 [Sorghum bicolor]
gi|241944424|gb|EES17569.1| hypothetical protein SORBIDRAFT_09g001250 [Sorghum bicolor]
Length = 663
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 139/412 (33%), Positives = 207/412 (50%), Gaps = 72/412 (17%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNR 502
P+ L+PYQ +W I ARVT KT +R ++N+RG GK+FS DLLD + GEIRAT FN + ++
Sbjct: 154 PVAQLNPYQTRWKIMARVTAKTDLRHYSNSRGPGKVFSFDLLDGQGGEIRATCFNVQADQ 213
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F D+IE DKVY IS LKPA KKF+S+N++YE++ H T++ C +D+ N+P +Y F
Sbjct: 214 FFDLIEVDKVYLISKGLLKPAMKKFNSLNHEYEVTLDHRTSIEVCVDDD-SNIPRQQYNF 272
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
+ I I +D++G+ S V K +T KR + L D S S+ + LWG
Sbjct: 273 RQISEIENIEAGAIVDLIGIVTSVGPSSIVMRKDGTQT-QKRTLQLKDMSFRSLEIILWG 331
Query: 623 K--EAE------TFDASNKPVIAVKAARVSEFQGN------------------------- 649
K +AE D+ + P++++K RV +F G
Sbjct: 332 KFCDAEGRQLQLLCDSGSNPILSLKGGRVCDFSGRSVVTISSTQLKVNPDFQVAERLKQW 391
Query: 650 -------------------------LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNT 684
L + +I+D+ LG DK D+ +V+G I + N
Sbjct: 392 YIIEGKNTAFISLSWGISNMSRSHVLKTIAQIKDENLGRSDKPDFITVKGAISHLKTDNF 451
Query: 685 TYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLF 740
Y AC + CNKKV++ +G ++C+KCNK F YR +L I D T + T F
Sbjct: 452 CYPACTMEVNGRLCNKKVMNNGDGTWQCDKCNKSLPNFEYRYLLLCQIQDHTGVTYATAF 511
Query: 741 QNEAESILGVTAQEV-------GESTEDHPALKKALFTQYIFRLRAKLEHYN 785
Q E+I G TAQE+ + ++ L +Y+F+L+ E YN
Sbjct: 512 QAAGEAIFGHTAQELFMIQNVEQDDMRFTEIMQAVLRREYLFKLKIYEETYN 563
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 109/344 (31%), Positives = 177/344 (51%), Gaps = 25/344 (7%)
Query: 2 LAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENID 61
L PA KKF+S+N++YE++ H T++ C +D+ N+P +Y F + I I +D
Sbjct: 230 LLKPAMKKFNSLNHEYEVTLDHRTSIEVCVDDD-SNIPRQQYNFRQISEIENIEAGAIVD 288
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK--EAE------TFDA 113
++G+ S V K +T KR + L D S S+ + LWGK +AE D+
Sbjct: 289 LIGIVTSVGPSSIVMRKDGTQT-QKRTLQLKDMSFRSLEIILWGKFCDAEGRQLQLLCDS 347
Query: 114 SNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQ 172
+ P++++K RV +F G +++S S+ L +NPD +L+ W+ + NT F +S
Sbjct: 348 GSNPILSLKGGRVCDFSGRSVVTIS-STQLKVNPDFQVAERLKQWYIIEGKNTAFISLSW 406
Query: 173 RTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQD 228
M L + +I+D+ LG DK D+ +V+G I + N Y AC +
Sbjct: 407 GISNMSRSHV--LKTIAQIKDENLGRSDKPDFITVKGAISHLKTDNFCYPACTMEVNGRL 464
Query: 229 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 288
CNKKV++ +G ++C+KCNK F YR +L I D T + T FQ E+I G TAQ
Sbjct: 465 CNKKVMNNGDGTWQCDKCNKSLPNFEYRYLLLCQIQDHTGVTYATAFQAAGEAIFGHTAQ 524
Query: 289 EV-------GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
E+ + ++ L +Y+F+L+ E YNG +++
Sbjct: 525 ELFMIQNVEQDDMRFTEIMQAVLRREYLFKLKIYEETYNGEQRV 568
>gi|125541337|gb|EAY87732.1| hypothetical protein OsI_09147 [Oryza sativa Indica Group]
Length = 658
Score = 225 bits (574), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 171/582 (29%), Positives = 271/582 (46%), Gaps = 133/582 (22%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG +S A+ A QL+D G L +IVQ+ Y+++ V R +++IL L +
Sbjct: 52 VSDGTAASS-ALFAAQLSDHARSGALRRGSIVQLSEYVINDVGP-----RRIIVILNLEV 105
Query: 385 IKPGTEIGFKIGNPQPLNT-------------------------NTDNSST--------- 410
+ EI IGNP L+ N+ N++T
Sbjct: 106 LVSECEI---IGNPTALSETGSPIPNPTRVEQFNGAPQYGLMAGNSSNTTTKPSDNVPLF 162
Query: 411 QQTPAATNTNGSNGVHNNVAI------PRQASAPVVQTH-------------PIVSLSPY 451
Q + A ++N + + V + P AP + H PI +L+PY
Sbjct: 163 QNSMAGNSSNFATRPSDKVPVFQPTVQPSYRPAPNYKNHGAIMKNEAPARIIPISALNPY 222
Query: 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKD 510
Q +W IKARVT K IR ++NA+G GK+FS DLLD + GEIR T FN +RF++++E
Sbjct: 223 QGRWAIKARVTAKGDIRRYHNAKGDGKVFSFDLLDSDGGEIRVTCFNALLDRFYEVVEVG 282
Query: 511 KVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE 570
KVY +S L+PA K ++ +NN++E+ + +TV C DE ++P+ ++ F P+ I +
Sbjct: 283 KVYVVSRGNLRPAQKNYNHLNNEWEILLENGSTVDLC-PDEDSSIPTQRFDFRPINEIED 341
Query: 571 ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEAE 626
+ +D++GV +++ K +T KR + L D S SV +T+WG +E
Sbjct: 342 AQNNAILDIIGVVTSVNPCTTIQRKNGMET-QKRTMNLKDMSGRSVEVTMWGDLCNREGS 400
Query: 627 TFDASNK----PVIAVKAARVSEFQGNLL------------------------------- 651
+ PV+AVKA +VS+F G +
Sbjct: 401 QLQGMVERGIFPVLAVKAGKVSDFSGKSVGTISSTQLFINPDSAEAHSLRQWFDSGGRDA 460
Query: 652 ----LMREI----------------QDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS 691
+ R+I +D+ LGMGDK D+ +V+ + F+ + Y ACP+
Sbjct: 461 STQSISRDITPGASRNEIRKTVAQIKDEGLGMGDKPDWITVKATVIFFKNESFFYTACPN 520
Query: 692 ----QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESI 747
+ CNKKV G + C+KC++EF YR +L I D + + WVT FQ + +
Sbjct: 521 MIGDRQCNKKVTKSTTGNWTCDKCDREFEECDYRYLLQFQIQDHSGTAWVTAFQEAGQEL 580
Query: 748 LGVTAQEVGESTE-DHP----ALKKALFTQYIFRLRAKLEHY 784
LG +A E+ E + P + LF +Y+ RL+ K E Y
Sbjct: 581 LGCSATELNALKEREDPRFADTMLNCLFQEYLLRLKVKEESY 622
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 110/347 (31%), Positives = 181/347 (52%), Gaps = 38/347 (10%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K ++ +NN++E+ + +TV C DE ++P+ ++ F P+ I + + +D++G
Sbjct: 294 PAQKNYNHLNNEWEILLENGSTVDLC-PDEDSSIPTQRFDFRPINEIEDAQNNAILDIIG 352
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEAETFDASNK---- 116
V +++ K +T KR + L D S SV +T+WG +E +
Sbjct: 353 VVTSVNPCTTIQRKNGMET-QKRTMNLKDMSGRSVEVTMWGDLCNREGSQLQGMVERGIF 411
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-------STQTNTRFEP 169
PV+AVKA +VS+F G K++ S+ L +NPD E H L+ WF STQ+ +R
Sbjct: 412 PVLAVKAGKVSDFSG-KSVGTISSTQLFINPDSAEAHSLRQWFDSGGRDASTQSISR--- 467
Query: 170 VSQRTGGMGGGAAGNLL--LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS- 226
+ GA+ N + + +I+D+ LGMGDK D+ +V+ + F+ + Y ACP+
Sbjct: 468 ------DITPGASRNEIRKTVAQIKDEGLGMGDKPDWITVKATVIFFKNESFFYTACPNM 521
Query: 227 ---QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL 283
+ CNKKV G + C+KC++EF YR +L I D + + WVT FQ + +L
Sbjct: 522 IGDRQCNKKVTKSTTGNWTCDKCDREFEECDYRYLLQFQIQDHSGTAWVTAFQEAGQELL 581
Query: 284 GVTAQEVGESTE-DHP----ALKKALFTQYIFRLRAKLEHYNGTKKI 325
G +A E+ E + P + LF +Y+ RL+ K E Y +K+
Sbjct: 582 GCSATELNALKEREDPRFADTMLNCLFQEYLLRLKVKEESYGDERKV 628
>gi|2624702|pdb|1JMC|A Chain A, Single Stranded Dna-Binding Domain Of Human Replication
Protein A Bound To Single Stranded Dna, Rpa70 Subunit,
Residues 183-420
Length = 246
Score = 225 bits (574), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 103/208 (49%), Positives = 152/208 (73%), Gaps = 2/208 (0%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKLFS++L+DESGEIRAT FN++ ++F
Sbjct: 10 PIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKF 69
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+IE +KVYY S TLK ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F
Sbjct: 70 FPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFT 127
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
+ + S D +D++G+C + + +T ++N + KR+I L+D S VT TLWG+
Sbjct: 128 GIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGE 187
Query: 624 EAETFDASNKPVIAVKAARVSEFQGNLL 651
+A+ FD S +PV+A+K ARVS+F G L
Sbjct: 188 DADKFDGSRQPVLAIKGARVSDFGGRSL 215
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 109/157 (69%), Gaps = 3/157 (1%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F + + S D +D++G+
Sbjct: 89 ANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGI 146
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T ++N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 147 CKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGAR 206
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ 162
VS+F GG++LS+ SS + NPDIPE +KL+GWF +
Sbjct: 207 VSDF-GGRSLSVLSSSTIIANPDIPEAYKLRGWFDAE 242
>gi|115398417|ref|XP_001214800.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114192991|gb|EAU34691.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 588
Score = 225 bits (574), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 129/322 (40%), Positives = 194/322 (60%), Gaps = 21/322 (6%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGF-- 393
MLATQ N +T G L V++K + + S + +LIIL+L +++ E+G
Sbjct: 62 MLATQANPFVTSGLLRRGCFVKLKSF-----QANSVKGKKILIILDLEVLQ---ELGEAE 113
Query: 394 KIGNPQPLNTNT-DNSSTQQTPAATN------TNGSNGVHNNVAIPRQASAPVVQT-HPI 445
KIG P+PL + D Q T ++N T G+ N A R AP T +PI
Sbjct: 114 KIGEPKPLESKAEDEEKPQPTTISSNGFYGSKTQGAQAQTTNRAPARPPVAPGHATMYPI 173
Query: 446 VSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHD 505
++SPY +KWTIKAR T+KT I+ W N + +GKLFS++LLD+SGEIRAT FN++C+ +D
Sbjct: 174 EAISPYCHKWTIKARCTSKTNIKTWQNTKSTGKLFSVNLLDDSGEIRATGFNEQCDALYD 233
Query: 506 MIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP 564
+ ++ VYYIS C ++ A K+F+++NNDYE++F TV+ ED+ ++P V++ F
Sbjct: 234 LFQEGGVYYISTPCRVQIAKKQFTNLNNDYELTFERD-TVVEKAEDQ-SDVPQVRFNFTT 291
Query: 565 LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE 624
+ + + D IDV+GV +A E S + KT K Y KR++TLVD + SV +T+WG
Sbjct: 292 IGDLQSVEKDTTIDVIGVLKEAGECSQIVSKTTSKPYNKRELTLVDNTGFSVRLTIWGAT 351
Query: 625 AETFDASNKPVIAVKAARVSEF 646
A F+ S + V+A K +VS+F
Sbjct: 352 AMDFNVSPEAVVAFKGVKVSDF 373
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/327 (32%), Positives = 181/327 (55%), Gaps = 10/327 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+F+++NNDYE++F T V+ ED+ ++P V++ F + + + D IDV+GV
Sbjct: 252 AKKQFTNLNNDYELTFERDT-VVEKAEDQ-SDVPQVRFNFTTIGDLQSVEKDTTIDVIGV 309
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+A E S + KT K Y KR++TLVD + SV +T+WG A F+ S + V+A K +
Sbjct: 310 LKEAGECSQIVSKTTSKPYNKRELTLVDNTGFSVRLTIWGATAMDFNVSPEAVVAFKGVK 369
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR--FEPVSQRTGGMGGGAAG 183
VS+F G++LSL S ++++PDI E H+L+GW+ Q S + A
Sbjct: 370 VSDFG-GRSLSLLSSGSMTVDPDIEEAHRLKGWYDAQGRDENFTSHASLSSATTSTMKAD 428
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ + +++++QLGM + A Y S++ + + N Y AC S+ CNKKV + + G + C
Sbjct: 429 SFKTIGQVKEEQLGMSEDAAYFSLKATVIYIKQENVYYPACLSEGCNKKVTELDPGQWHC 488
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
E+C K + YR I+ + + D T +W++ F ++G +A E+ E+
Sbjct: 489 ERCEKTYPHPEYRYIMLINVSDHTGQLWLSCFDEVGRLMMGTSANELSALRENDEKAAGE 548
Query: 304 LFTQ-----YIFRLRAKLEHYNGTKKI 325
+F + FR RAK +H++G ++I
Sbjct: 549 IFQNANCRTWNFRCRAKTDHFDGQQRI 575
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 714
+++++QLGM + A Y S++ + + N Y AC S+ CNKKV + + G + CE+C K
Sbjct: 435 QVKEEQLGMSEDAAYFSLKATVIYIKQENVYYPACLSEGCNKKVTELDPGQWHCERCEKT 494
Query: 715 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQ-- 772
+ YR I+ + + D T +W++ F ++G +A E+ E+ +F
Sbjct: 495 YPHPEYRYIMLINVSDHTGQLWLSCFDEVGRLMMGTSANELSALRENDEKAAGEIFQNAN 554
Query: 773 ---YIFRLRAKLEHYN 785
+ FR RAK +H++
Sbjct: 555 CRTWNFRCRAKTDHFD 570
>gi|212528756|ref|XP_002144535.1| replication protein A 70 kDa DNA-binding subunit [Talaromyces
marneffei ATCC 18224]
gi|210073933|gb|EEA28020.1| replication protein A 70 kDa DNA-binding subunit [Talaromyces
marneffei ATCC 18224]
Length = 601
Score = 225 bits (574), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 200/327 (61%), Gaps = 21/327 (6%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
M+ATQ N ++ DG L + +V++K + S + + +LIIL+L +++ E KI
Sbjct: 62 MIATQANHLVKDGILRKGCLVRLKSF-----QSNAIKGKKILIILDLEVLQHLGEYE-KI 115
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNG--------SNGVHNNVAIPRQASAPVVQTHPIVS 447
G+P+PL T ++ + TP + NG +G HN + + +S+ +PI +
Sbjct: 116 GDPKPLETKAEDEE-KTTPTMISGNGVYSTKAPTGHGTHN---LRQTSSSGHATIYPIEA 171
Query: 448 LSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMI 507
+SPY +KWTIKAR T+K+ I+ W+ + GKLFS++LLD+SGEI+AT FND+C+ +D+
Sbjct: 172 ISPYSHKWTIKARCTSKSAIKTWHRSNSEGKLFSVNLLDDSGEIKATGFNDQCDLLYDIF 231
Query: 508 EKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLK 566
++ VYYIS+ C ++ A K+FS++NNDYE++F T++ ED+ ++P V++ F +
Sbjct: 232 QEGSVYYISSPCRVQIAKKQFSNLNNDYELTF-EKDTIVEKAEDQ-DSVPQVRFNFTTIG 289
Query: 567 TIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE 626
+ + D IDV+GV + + S +T KT K Y KRD+TLVD + SV +T+WG A
Sbjct: 290 DLQSVEKDTTIDVIGVLKEVGQTSQITSKTTNKPYDKRDLTLVDNTGFSVRLTVWGNLAT 349
Query: 627 TFDASNKPVIAVKAARVSEFQGNLLLM 653
F+ + V+A K +VS+F G L +
Sbjct: 350 NFNTLPESVVAFKGVKVSDFGGRSLSL 376
Score = 222 bits (566), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 116/328 (35%), Positives = 190/328 (57%), Gaps = 11/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++NNDYE++F T++ ED+ ++P V++ F + + + D IDV+GV
Sbjct: 248 AKKQFSNLNNDYELTF-EKDTIVEKAEDQ-DSVPQVRFNFTTIGDLQSVEKDTTIDVIGV 305
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ + S +T KT K Y KRD+TLVD + SV +T+WG A F+ + V+A K +
Sbjct: 306 LKEVGQTSQITSKTTNKPYDKRDLTLVDNTGFSVRLTVWGNLATNFNTLPESVVAFKGVK 365
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGM--GGGAA 182
VS+F GG++LSL S +++PDI E H+L+GW+ Q + F + + G+ GGG
Sbjct: 366 VSDF-GGRSLSLLSSGTFTVDPDIEEAHRLKGWYDAQGRSDTFASHASMSDGVTSGGGKL 424
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
+ +I+++QLGM + AD+ S++ I + N +Y ACPSQDCNKKV + + G +R
Sbjct: 425 DQYKTIAQIREEQLGMSEAADFFSLKATIIYIKQDNVSYPACPSQDCNKKVSELDPGQWR 484
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKK 302
CE+C+K + YR I+ + + D T +W+ F I+G TA ++ ++
Sbjct: 485 CERCDKTYPKPEYRYIMLINVSDHTGQLWLNCFDEVGRLIMGTTADDLVNMEAENKYESS 544
Query: 303 ALFTQ-----YIFRLRAKLEHYNGTKKI 325
LF + + FR +AK++HY ++I
Sbjct: 545 ELFQEANCQTWNFRCKAKMDHYGEQQRI 572
Score = 102 bits (254), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 80/139 (57%), Gaps = 5/139 (3%)
Query: 653 MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCN 712
+ +I+++QLGM + AD+ S++ I + N +Y ACPSQDCNKKV + + G +RCE+C+
Sbjct: 430 IAQIREEQLGMSEAADFFSLKATIIYIKQDNVSYPACPSQDCNKKVSELDPGQWRCERCD 489
Query: 713 KEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQ 772
K + YR I+ + + D T +W+ F I+G TA ++ ++ LF +
Sbjct: 490 KTYPKPEYRYIMLINVSDHTGQLWLNCFDEVGRLIMGTTADDLVNMEAENKYESSELFQE 549
Query: 773 -----YIFRLRAKLEHYNK 786
+ FR +AK++HY +
Sbjct: 550 ANCQTWNFRCKAKMDHYGE 568
>gi|13096131|pdb|1FGU|A Chain A, Ssdna-Binding Domain Of The Large Subunit Of Replication
Protein A
gi|13096132|pdb|1FGU|B Chain B, Ssdna-Binding Domain Of The Large Subunit Of Replication
Protein A
Length = 252
Score = 225 bits (573), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 103/208 (49%), Positives = 152/208 (73%), Gaps = 2/208 (0%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKLFS++L+DESGEIRAT FN++ ++F
Sbjct: 6 PIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKF 65
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+IE +KVYY S TLK ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F
Sbjct: 66 FPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFT 123
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
+ + S D +D++G+C + + +T ++N + KR+I L+D S VT TLWG+
Sbjct: 124 GIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGE 183
Query: 624 EAETFDASNKPVIAVKAARVSEFQGNLL 651
+A+ FD S +PV+A+K ARVS+F G L
Sbjct: 184 DADKFDGSRQPVLAIKGARVSDFGGRSL 211
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 109/157 (69%), Gaps = 3/157 (1%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F + + S D +D++G+
Sbjct: 85 ANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGI 142
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T ++N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 143 CKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGAR 202
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ 162
VS+F GG++LS+ SS + NPDIPE +KL+GWF +
Sbjct: 203 VSDF-GGRSLSVLSSSTIIANPDIPEAYKLRGWFDAE 238
>gi|255546005|ref|XP_002514062.1| replication factor A 1, rfa1, putative [Ricinus communis]
gi|223546518|gb|EEF48016.1| replication factor A 1, rfa1, putative [Ricinus communis]
Length = 670
Score = 225 bits (573), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 143/415 (34%), Positives = 208/415 (50%), Gaps = 79/415 (19%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNR 502
PI +L+PYQ +W IKARVT K +R +NNARG GK+FS DLLD + GEIR T FN R
Sbjct: 226 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVER 285
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F+D+IE +VY IS +LKPA + F+ + N++E+ ++TV C D ++P ++ F
Sbjct: 286 FYDVIEVGRVYLISKGSLKPAQRNFNHLKNEWEIFLEATSTVDLC-PDGDNSIPKQQFTF 344
Query: 563 VPLKTIAEISPDEN---IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
KTI+EI EN +DV+G+ I + K +T +R + L D S ++ +T
Sbjct: 345 ---KTISEIENVENNSILDVIGIVISVNPSVPILRKNGMET-QRRILNLKDGSGRNIELT 400
Query: 620 LWG----KEA----ETFDASNKPVIAVKAARVSEFQGNLL-------------------- 651
LWG KE E D+ + PV+AVKA +VS+F G L
Sbjct: 401 LWGDFCNKEGQQLQEIVDSGDFPVLAVKAGKVSDFSGKSLGTISSTQLFINPDIPEAHGL 460
Query: 652 -------------------------------LMREIQDQQLGMGDKADYCSVRGIIQVFR 680
+ +I+ + LG D+ D+ +V I +
Sbjct: 461 KDWFDRGGQHTASVSISRDILPGGSKNEIRKTVSQIKHEGLGRSDRPDWVTVSARITFVK 520
Query: 681 GSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW 736
Y ACP + CNKKV N ++C++CN+EF+ YR +L V I D T W
Sbjct: 521 TDTFCYTACPLMIGDRQCNKKVTSSGNSRWQCDRCNQEFDECDYRYLLQVQIQDHTGLTW 580
Query: 737 VTLFQNEAESILGVTAQEV-------GESTEDHPALKKALFTQYIFRLRAKLEHY 784
VT FQ E ILG+ A+E+ + T+ ++ LF Q++FRL+ K E Y
Sbjct: 581 VTAFQESGEEILGLPAKELYQLKYEMQDDTKFSDVIRSRLFQQFLFRLKIKEEMY 635
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 114/344 (33%), Positives = 179/344 (52%), Gaps = 30/344 (8%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN---ID 61
PA + F+ + N++E+ ++TV C D ++P ++ F KTI+EI EN +D
Sbjct: 305 PAQRNFNHLKNEWEIFLEATSTVDLC-PDGDNSIPKQQFTF---KTISEIENVENNSILD 360
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEA----ETFDA 113
V+G+ I + K +T +R + L D S ++ +TLWG KE E D+
Sbjct: 361 VIGIVISVNPSVPILRKNGMET-QRRILNLKDGSGRNIELTLWGDFCNKEGQQLQEIVDS 419
Query: 114 SNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQR 173
+ PV+AVKA +VS+F GK+L S+ L +NPDIPE H L+ WF + VS
Sbjct: 420 GDFPVLAVKAGKVSDF-SGKSLGTISSTQLFINPDIPEAHGLKDWFD-RGGQHTASVSIS 477
Query: 174 TGGMGGGAAGNLL-LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQD 228
+ GG+ + + +I+ + LG D+ D+ +V I + Y ACP +
Sbjct: 478 RDILPGGSKNEIRKTVSQIKHEGLGRSDRPDWVTVSARITFVKTDTFCYTACPLMIGDRQ 537
Query: 229 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 288
CNKKV N ++C++CN+EF+ YR +L V I D T WVT FQ E ILG+ A+
Sbjct: 538 CNKKVTSSGNSRWQCDRCNQEFDECDYRYLLQVQIQDHTGLTWVTAFQESGEEILGLPAK 597
Query: 289 EV-------GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
E+ + T+ ++ LF Q++FRL+ K E Y +++
Sbjct: 598 ELYQLKYEMQDDTKFSDVIRSRLFQQFLFRLKIKEEMYGDEQRV 641
Score = 46.6 bits (109), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 13/99 (13%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AMLATQLND + G + + ++VQ+ YI S V NR ++++L L I P EI
Sbjct: 52 AMLATQLNDRVKHGFVKKGSVVQLIDYICSEVQ-----NRKIIVVLNLETIIPECEI--- 103
Query: 395 IGNPQPL-----NTNTDNSSTQQTPAATNTNGSNGVHNN 428
IGN + L + N ++ Q+ N S H+N
Sbjct: 104 IGNAKTLTDMFAQKASQNGNSVQSAGVGYNNSSARNHDN 142
>gi|190345993|gb|EDK37976.2| hypothetical protein PGUG_02074 [Meyerozyma guilliermondii ATCC
6260]
Length = 469
Score = 225 bits (573), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 135/416 (32%), Positives = 204/416 (49%), Gaps = 76/416 (18%)
Query: 443 HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNR 502
+PI SLSPYQN W IKARV+ K IR+W+NARG GKLF+++ LDES EIRAT FND +
Sbjct: 25 NPIESLSPYQNNWRIKARVSFKGDIRKWSNARGEGKLFNVNFLDESDEIRATAFNDVAEQ 84
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F++ +E+ KVY + ++ A +FS + + YE++ T + C + ++P + + F
Sbjct: 85 FYNTLEEGKVYTVERARIQQAKPQFSHLTHPYELALDKDTVITECF--DTSDVPKLHFNF 142
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
L I + +DV+GV A + +T K+ K + +R+IT+VD S ++ + LW
Sbjct: 143 TKLDKIQAAEVNAVVDVIGVLKTANPVFQITAKSTGKAFDRRNITIVDDSNFAIDIGLWN 202
Query: 623 KEAETFDASNKPVIAVKAARVSEFQGNLLLMRE--------------------------- 655
+ A F+ S VIA K +V +F G L +
Sbjct: 203 QTALEFNTSEGSVIAFKGCKVQDFGGRSLTLTHSGSMVVNPDTPEAYQLKGWYDNQGMNE 262
Query: 656 ------------------------IQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKAC-- 689
Q+ LGM +K D+ SV+ I F+ N +Y AC
Sbjct: 263 NFKSLKVEAGPNQNYIKNRKTILAAQEDNLGMHEKPDFFSVKATISYFKTDNFSYPACSN 322
Query: 690 --------PSQD---CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVT 738
P Q CN+KV++Q++G +RCEKCN +R IL I D T +W T
Sbjct: 323 TVPGNSQAPGQQENTCNRKVLEQSDG-WRCEKCNITLPEPLHRYILNCSITDETGQLWTT 381
Query: 739 LFQNEAESILGVTA---------QEVGESTEDHPALKKALFTQYIFRLRAKLEHYN 785
LF EA + G++A Q++ ES E ++ ++ FRLRA+ + YN
Sbjct: 382 LFDQEARKLFGMSAGDLINLKEKQDMNESNEFADLMESITMKEFNFRLRARQDSYN 437
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 177/343 (51%), Gaps = 28/343 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A +FS + + YE++ T + C + ++P + + F L I + +DV+GV
Sbjct: 105 AKPQFSHLTHPYELALDKDTVITECFD--TSDVPKLHFNFTKLDKIQAAEVNAVVDVIGV 162
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
A + +T K+ K + +R+IT+VD S ++ + LW + A F+ S VIA K +
Sbjct: 163 LKTANPVFQITAKSTGKAFDRRNITIVDDSNFAIDIGLWNQTALEFNTSEGSVIAFKGCK 222
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAGN 184
V +F GG++L+L+ S + +NPD PE ++L+GW+ Q N F+ + + G N
Sbjct: 223 VQDF-GGRSLTLTHSGSMVVNPDTPEAYQLKGWYDNQGMNENFKSL-KVEAGPNQNYIKN 280
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKAC----------PSQD---CNK 231
+ Q+ LGM +K D+ SV+ I F+ N +Y AC P Q CN+
Sbjct: 281 RKTILAAQEDNLGMHEKPDFFSVKATISYFKTDNFSYPACSNTVPGNSQAPGQQENTCNR 340
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA---- 287
KV++Q++G +RCEKCN +R IL I D T +W TLF EA + G++A
Sbjct: 341 KVLEQSDG-WRCEKCNITLPEPLHRYILNCSITDETGQLWTTLFDQEARKLFGMSAGDLI 399
Query: 288 -----QEVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
Q++ ES E ++ ++ FRLRA+ + YNG +I
Sbjct: 400 NLKEKQDMNESNEFADLMESITMKEFNFRLRARQDSYNGNVRI 442
>gi|344230771|gb|EGV62656.1| hypothetical protein CANTEDRAFT_115222 [Candida tenuis ATCC 10573]
Length = 591
Score = 225 bits (573), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 142/427 (33%), Positives = 215/427 (50%), Gaps = 74/427 (17%)
Query: 432 PRQASAPVVQTHP-----------IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLF 480
P+ A+AP Q+ I SLSPYQN W IKARV+ K +R W+NA+GSGKLF
Sbjct: 134 PQPAAAPSKQSSAADEFQGQRISSIESLSPYQNNWVIKARVSFKGDLRTWHNAKGSGKLF 193
Query: 481 SIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTH 540
+++ LD+S EIRAT FN+ + ++ +++ KVYYIS ++ A +FS +++ YE+S
Sbjct: 194 NVNFLDDSDEIRATAFNELAEKMYETLQEGKVYYISKARIQAAKPQFSRLSHPYELSLDR 253
Query: 541 STTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKT 600
T V C + GN+P +K+ F L I P+ IDV+GV + +T K+ K
Sbjct: 254 DTIVEECFSNN-GNVPKLKFNFTKLNQIQSAEPNTVIDVVGVLREVKPAFQITSKSTGKP 312
Query: 601 YMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM------- 653
+ +RDI +VD S S+T+ LW A F+ S VIA K ++ +F G L +
Sbjct: 313 FDRRDIDIVDDSNFSITVGLWNATAIDFNLSEGTVIAFKGCKIQDFGGRSLTLTQTGSIL 372
Query: 654 --------------------------------------------REIQDQQLGMGDKADY 669
+++++ LG ++ D+
Sbjct: 373 PNPDAPEAYQLKGWYDNQGSNETFQTLKADNAGSANYIKNRKTIAQVKEENLGAQEQPDF 432
Query: 670 CSVRGIIQVFRGSNTTYKACPSQD------CNKKVIDQNNGMYRCEKCNKEFNTFTYRLI 723
SV+ I F+ Y AC ++ CN+K+IDQ +G +RCEKC+ ++ TYR I
Sbjct: 433 FSVKATINFFKTETFCYPACVNKQEASNNLCNRKIIDQGDGTWRCEKCDINYSEATYRYI 492
Query: 724 LPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-LKKAL----FTQYIFRLR 778
L I D T +W TLF EA I GV+A E+ E + A KK + ++ FRL+
Sbjct: 493 LNCSIMDATEQLWATLFDQEASKIFGVSANELLVLKESNEAEFKKVVEAVTMKEFSFRLK 552
Query: 779 AKLEHYN 785
A+ + YN
Sbjct: 553 ARQDSYN 559
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 113/332 (34%), Positives = 180/332 (54%), Gaps = 15/332 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A +FS +++ YE+S T V C + GN+P +K+ F L I P+ IDV+GV
Sbjct: 236 AKPQFSRLSHPYELSLDRDTIVEECFSNN-GNVPKLKFNFTKLNQIQSAEPNTVIDVVGV 294
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ +T K+ K + +RDI +VD S S+T+ LW A F+ S VIA K +
Sbjct: 295 LREVKPAFQITSKSTGKPFDRRDIDIVDDSNFSITVGLWNATAIDFNLSEGTVIAFKGCK 354
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAGN 184
+ +F GG++L+L+ + + NPD PE ++L+GW+ Q +N F+ + G N
Sbjct: 355 IQDF-GGRSLTLTQTGSILPNPDAPEAYQLKGWYDNQGSNETFQTLKADNAG-SANYIKN 412
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD------CNKKVIDQNN 238
+ +++++ LG ++ D+ SV+ I F+ Y AC ++ CN+K+IDQ +
Sbjct: 413 RKTIAQVKEENLGAQEQPDFFSVKATINFFKTETFCYPACVNKQEASNNLCNRKIIDQGD 472
Query: 239 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP 298
G +RCEKC+ ++ TYR IL I D T +W TLF EA I GV+A E+ E +
Sbjct: 473 GTWRCEKCDINYSEATYRYILNCSIMDATEQLWATLFDQEASKIFGVSANELLVLKESNE 532
Query: 299 A-LKKAL----FTQYIFRLRAKLEHYNGTKKI 325
A KK + ++ FRL+A+ + YNG +I
Sbjct: 533 AEFKKVVEAVTMKEFSFRLKARQDSYNGESRI 564
>gi|68472689|ref|XP_719663.1| hypothetical protein CaO19.9640 [Candida albicans SC5314]
gi|68472948|ref|XP_719539.1| hypothetical protein CaO19.2093 [Candida albicans SC5314]
gi|46441361|gb|EAL00659.1| hypothetical protein CaO19.2093 [Candida albicans SC5314]
gi|46441490|gb|EAL00787.1| hypothetical protein CaO19.9640 [Candida albicans SC5314]
gi|238881852|gb|EEQ45490.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 624
Score = 225 bits (573), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 134/442 (30%), Positives = 219/442 (49%), Gaps = 72/442 (16%)
Query: 414 PAATNTNG-SNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNN 472
P A +TN + V VA + + + PI ++SPYQN WTIKARV+ K +R W+N
Sbjct: 152 PLAQSTNSFKSEVGGGVAAQSKPAGTHRKVSPIETISPYQNNWTIKARVSYKGDLRTWSN 211
Query: 473 ARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINN 532
++G GK+F +LLDES EI+A+ FN+ R H ++E+ KVYYIS + A KKF+++++
Sbjct: 212 SKGEGKVFGFNLLDESDEIKASAFNETAERAHKLLEEGKVYYISKARVAAARKKFNTLSH 271
Query: 533 DYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSV 592
YE++F T + C ++ ++P + + FV L + + + IDVLG +
Sbjct: 272 PYELTFDKDTEITECFDE--SDVPKLNFNFVKLDQVQNLEANAIIDVLGALKTVFPPFQI 329
Query: 593 TGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLL 652
T K+ K + +R+I +VD++ + + LW A F+ V+AVK +VS++ G L
Sbjct: 330 TAKSTGKVFDRRNILVVDETGFGIELGLWNNTATDFNIEEGTVVAVKGCKVSDYDGRTLS 389
Query: 653 M-------------------------------REIQDQQLGMG----------------- 664
+ + ++ G G
Sbjct: 390 LTQAGSIIPNPGTPESFKLKGWYDNIGIHESFKSLKIDNAGSGGDKISQRISINQALEEH 449
Query: 665 ----DKADYCSVRGIIQVFRGSNTTYKAC-----------PSQDCNKKVIDQ-NNGMYRC 708
+K DY S++ + + N Y AC P+Q CNKK++ Q N+G +RC
Sbjct: 450 SGSTEKPDYFSIKASVTFCKPENFAYPACPNLVQNADATRPAQVCNKKLVFQDNDGTWRC 509
Query: 709 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED-----HP 763
E+C K + T+R +L + D T +WVTLF ++AE +LG+ A E+ + E +
Sbjct: 510 ERCAKTYEEPTWRYVLSCSVTDSTGHMWVTLFNDQAEKLLGIDATELVKKKEQKSEVANQ 569
Query: 764 ALKKALFTQYIFRLRAKLEHYN 785
+ LF ++ R++AK E YN
Sbjct: 570 IMNNTLFKEFSLRVKAKQETYN 591
Score = 178 bits (452), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 176/335 (52%), Gaps = 21/335 (6%)
Query: 4 APANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVL 63
A A KKF+++++ YE++F T + C ++ ++P + + FV L + + + IDVL
Sbjct: 260 AAARKKFNTLSHPYELTFDKDTEITECFDE--SDVPKLNFNFVKLDQVQNLEANAIIDVL 317
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKA 123
G +T K+ K + +R+I +VD++ + + LW A F+ V+AVK
Sbjct: 318 GALKTVFPPFQITAKSTGKVFDRRNILVVDETGFGIELGLWNNTATDFNIEEGTVVAVKG 377
Query: 124 ARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGGGAA 182
+VS++ G +TLSL+ + + NP PE KL+GW+ + + F+ + G GG
Sbjct: 378 CKVSDYDG-RTLSLTQAGSIIPNPGTPESFKLKGWYDNIGIHESFKSLKIDNAGSGGDKI 436
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP-----------SQDCNK 231
+ + + ++ G +K DY S++ + + N Y ACP +Q CNK
Sbjct: 437 SQRISINQALEEHSGSTEKPDYFSIKASVTFCKPENFAYPACPNLVQNADATRPAQVCNK 496
Query: 232 KVIDQNN-GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 290
K++ Q+N G +RCE+C K + T+R +L + D T +WVTLF ++AE +LG+ A E+
Sbjct: 497 KLVFQDNDGTWRCERCAKTYEEPTWRYVLSCSVTDSTGHMWVTLFNDQAEKLLGIDATEL 556
Query: 291 GESTED-----HPALKKALFTQYIFRLRAKLEHYN 320
+ E + + LF ++ R++AK E YN
Sbjct: 557 VKKKEQKSEVANQIMNNTLFKEFSLRVKAKQETYN 591
>gi|393216703|gb|EJD02193.1| replication factor-a protein [Fomitiporia mediterranea MF3/22]
Length = 605
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/342 (36%), Positives = 194/342 (56%), Gaps = 26/342 (7%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGV+ AMLATQL ++ +G ++++++V++++ + V N+ +LI+L L
Sbjct: 55 VSDGVHYTQ-AMLATQLTGMVDEGEIAKYSVVKVEKLTCNNVQ-----NKKLLILLALT- 107
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSN-------------GVHNNVAI 431
P G KIG+P L N+S+ AT T N
Sbjct: 108 --PVGNPGEKIGDPGSLEVPGQNASSSTEAQATPTTAVNTPVAQQQKSVQSQKPPQQQQQ 165
Query: 432 PRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEI 491
++A+ PVV PI LSPYQNKWTI+ARVT K+ +R ++ +G GK+F++ L+D+SGEI
Sbjct: 166 QQRANGPVV--FPIEGLSPYQNKWTIRARVTVKSDVRHYSTPKGEGKIFTVTLMDDSGEI 223
Query: 492 RATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDE 551
RAT FN + ++F+D +E+ KVYY+S + A KKFS++ N+YE+ T + C +
Sbjct: 224 RATGFNHQVDQFYDKLEEGKVYYVSKARVNLAKKKFSNVQNEYELMLGTETEISECADQA 283
Query: 552 VGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ 611
P + Y FV L + D DV+G+ D ++++ + K +T KR++TL+D
Sbjct: 284 AA--PQITYHFVKLSELGNQEKDTTCDVIGIVKDVSDVTEIVAKATGRTIKKRELTLIDL 341
Query: 612 SQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM 653
S+ +V MTLWGK+AE++ A V+A K ARV +F G L M
Sbjct: 342 SEFAVRMTLWGKQAESYTAEEHAVLAFKGARVGDFGGRSLSM 383
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 180/336 (53%), Gaps = 21/336 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A KKFS++ N+YE+ T + C + P + Y FV L + D DV+G+
Sbjct: 255 AKKKFSNVQNEYELMLGTETEISECADQAAA--PQITYHFVKLSELGNQEKDTTCDVIGI 312
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D ++++ + K +T KR++TL+D S+ +V MTLWGK+AE++ A V+A K AR
Sbjct: 313 VKDVSDVTEIVAKATGRTIKKRELTLIDLSEFAVRMTLWGKQAESYTAEEHAVLAFKGAR 372
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST-------QTNTRFEPVSQRTGGMG 178
V +F GG++LS+S ++ +S+NPDI E H L+GWF + ++++ + G +
Sbjct: 373 VGDF-GGRSLSMSNATHMSVNPDINEAHVLRGWFDSLNSPPAFKSHSGGSSSAGGFGDIR 431
Query: 179 GGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNN 238
A LL +R +Q+ + D + S RG I + N Y ACP+ CNKKVI+ +
Sbjct: 432 REAMKTLLEVRALQEN---VPDGGENFSCRGTILHIKADNLFYPACPT--CNKKVIEGSE 486
Query: 239 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH- 297
G +RCEKC++ + YR ++ + + D T VW+ F + + G TA E+ E E
Sbjct: 487 G-WRCEKCDRAYTEPEYRFMMSMSVADHTGQVWLNGFNDVGLVVFGKTASELHELKERDE 545
Query: 298 ----PALKKALFTQYIFRLRAKLEHYNGTKKIPDGV 329
A+ +A Y F RAK + YN ++ G+
Sbjct: 546 SAYTAAIARATCNTYNFNCRAKQDTYNEQSRVRFGI 581
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Query: 653 MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCN 712
+ E++ Q + D + S RG I + N Y ACP+ CNKKVI+ + G +RCEKC+
Sbjct: 438 LLEVRALQENVPDGGENFSCRGTILHIKADNLFYPACPT--CNKKVIEGSEG-WRCEKCD 494
Query: 713 KEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKK 767
+ + YR ++ + + D T VW+ F + + G TA E+ E E A+ +
Sbjct: 495 RAYTEPEYRFMMSMSVADHTGQVWLNGFNDVGLVVFGKTASELHELKERDESAYTAAIAR 554
Query: 768 ALFTQYIFRLRAKLEHYNK 786
A Y F RAK + YN+
Sbjct: 555 ATCNTYNFNCRAKQDTYNE 573
>gi|336269529|ref|XP_003349525.1| RFA1 protein [Sordaria macrospora k-hell]
gi|380093400|emb|CCC09058.1| putative RFA1 protein [Sordaria macrospora k-hell]
Length = 610
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 200/332 (60%), Gaps = 29/332 (8%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGF-- 393
M+ATQ N ++ DG L IV++K+Y + +++LI+L+L +I+ +G
Sbjct: 64 MMATQTNHLVHDGLLQRGCIVRLKQYQAQCLKG-----KNILIVLDLEVIQ---SLGCPE 115
Query: 394 KIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVA------IPRQASAPVVQ------ 441
K+G+PQPL + P +T G GV N PRQA +
Sbjct: 116 KMGDPQPLGPR--GAEPTHNPNLGST-GFYGVKNEQTQDTKPQFPRQAPSRNTSGGQGSN 172
Query: 442 -THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDEC 500
+PI LSP+ +KWTIKARVT+K+ I+ W+ G GKLFS++ LDESGEIRAT FN++
Sbjct: 173 TIYPIEGLSPFSHKWTIKARVTSKSDIKTWHKPSGEGKLFSVNFLDESGEIRATGFNEQV 232
Query: 501 NRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK 559
++F+D++++ +VYYIS C ++ A K+FS++ NDYE++F T + ED+ ++P V+
Sbjct: 233 DQFYDLLQEGQVYYISTPCRVQLAKKQFSNLPNDYELTFERDTQIEKA-EDQT-SVPQVR 290
Query: 560 YCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
+ FV ++ + ++ D IDV+GV + E++ + KT QK Y KR++TLVD + SV T
Sbjct: 291 FNFVNIQELQDVEKDATIDVIGVLKEVQEVTQIVSKTTQKPYDKRELTLVDNTGYSVRCT 350
Query: 620 LWGKEAETFDASNKPVIAVKAARVSEFQGNLL 651
+WGK A FDA + ++A+K +VS+F G L
Sbjct: 351 IWGKTATNFDAQPESIVAMKGTKVSDFGGRSL 382
Score = 215 bits (547), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 119/350 (34%), Positives = 198/350 (56%), Gaps = 13/350 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ NDYE++F T + ED+ ++P V++ FV ++ + ++ D IDV+GV
Sbjct: 256 AKKQFSNLPNDYELTFERDTQIEKA-EDQT-SVPQVRFNFVNIQELQDVEKDATIDVIGV 313
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ E++ + KT QK Y KR++TLVD + SV T+WGK A FDA + ++A+K +
Sbjct: 314 LKEVQEVTQIVSKTTQKPYDKRELTLVDNTGYSVRCTIWGKTATNFDAQPESIVAMKGTK 373
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF--STQTNTRFEPVSQRTGGMGGGAAG 183
VS+F GG++LSL S ++++PDIPE H L+GW+ S + NT + T G G
Sbjct: 374 VSDF-GGRSLSLLSSGTMAIDPDIPEAHHLKGWYDSSGRNNTFATHNNMATLGGATGRKD 432
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ + +++++ LG G+ DY S++ + + N Y C S+ CN+KV D +G +RC
Sbjct: 433 DTKTISQVKEENLGTGEMPDYFSLKATVVYIKQDNFAYPGCRSEGCNRKVTDMGDGTWRC 492
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
EKC + YR I+ V + D T +W++ F + A I+G +A E+ E E+ A
Sbjct: 493 EKCQVNHDRPQYRYIMSVNVNDHTGQLWLSCFDDTARIIMGKSADELIEMRENDETRLAA 552
Query: 304 LFTQ-----YIFRLRAKLEHYNGTKKIPDGVNINS---FAMLATQLNDII 345
F Q FR RAK++ + +++ V + + M +LN++I
Sbjct: 553 EFEQANCRKLNFRCRAKMDTFGEQQRVRYQVMSAAPLDYKMEGNKLNELI 602
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 73/137 (53%), Gaps = 5/137 (3%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 714
+++++ LG G+ DY S++ + + N Y C S+ CN+KV D +G +RCEKC
Sbjct: 439 QVKEENLGTGEMPDYFSLKATVVYIKQDNFAYPGCRSEGCNRKVTDMGDGTWRCEKCQVN 498
Query: 715 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQ-- 772
+ YR I+ V + D T +W++ F + A I+G +A E+ E E+ A F Q
Sbjct: 499 HDRPQYRYIMSVNVNDHTGQLWLSCFDDTARIIMGKSADELIEMRENDETRLAAEFEQAN 558
Query: 773 ---YIFRLRAKLEHYNK 786
FR RAK++ + +
Sbjct: 559 CRKLNFRCRAKMDTFGE 575
>gi|326533496|dbj|BAK05279.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1027
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 149/469 (31%), Positives = 231/469 (49%), Gaps = 84/469 (17%)
Query: 387 PGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIV 446
PGT G I P + S QQ P A NG P + ++T PI
Sbjct: 285 PGT--GGGISPPGNVYGRPAQPSYQQPPQAYANNG----------PVAKNGAALRTVPIS 332
Query: 447 SLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNRFHD 505
+L+PYQ WTIKARVT K+ ++ + NA+G GKLF+ DL D GEIRA FN + ++F+D
Sbjct: 333 ALNPYQRTWTIKARVTAKSQVKHYKNAKGPGKLFNFDLRDAHGGEIRAVCFNTQLDQFYD 392
Query: 506 MIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPL 565
+IE DKVY IS +LKPANK+++ +NNDYE+S STT+ C++D+ ++P ++ F +
Sbjct: 393 LIEVDKVYLISRGSLKPANKQYNHLNNDYEVSLDSSTTIEVCSDDD-SSIPRQQFDFRQI 451
Query: 566 KTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG--- 622
IA + D +D+LGV + S T K +T KR + L D S SV +T WG
Sbjct: 452 SEIANMDKDTMVDLLGVVTSVSPSSPFTRKDGAET-QKRVLQLKDMSGFSVEITFWGGFC 510
Query: 623 -KEAETF----DASNKPVIAVKAARVSEFQG----------------------------- 648
E + D+ PV+A+++ RV +F+G
Sbjct: 511 NAEGQQLQSLCDSGLNPVLALRSVRVGDFKGKNVSTIGSSFLKINPDFPDAESLRQWYIT 570
Query: 649 ---------------------NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYK 687
+ + +I+ + LG +K D+ +V+G I N Y
Sbjct: 571 EGKNAAFISLSMEGSGMGRTDDRKTIEQIKAENLGRSEKPDWITVKGTISHISTDNFCYP 630
Query: 688 ACPSQ----DCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNE 743
AC ++ CNKKV + +GM++C+KC + YR +L I D+T + + T F +
Sbjct: 631 ACTTEVNGTRCNKKVTNNGDGMWQCDKCEQSTPNCEYRYMLQCQIQDYTGTSYATAFHDA 690
Query: 744 AESILGVTAQEV----GESTEDHP---ALKKALFTQYIFRLRAKLEHYN 785
+ I+G+ AQ++ E +D ++K F ++F+L+ K E +N
Sbjct: 691 GKDIIGLPAQDLYRIKHEEQDDEKFADIIQKVRFELFLFKLKVKEEVFN 739
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/341 (31%), Positives = 181/341 (53%), Gaps = 25/341 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK+++ +NNDYE+S STT+ C++D+ ++P ++ F + IA + D +D+LG
Sbjct: 409 PANKQYNHLNNDYEVSLDSSTTIEVCSDDD-SSIPRQQFDFRQISEIANMDKDTMVDLLG 467
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEAETF----DASNK 116
V + S T K +T KR + L D S SV +T WG E + D+
Sbjct: 468 VVTSVSPSSPFTRKDGAET-QKRVLQLKDMSGFSVEITFWGGFCNAEGQQLQSLCDSGLN 526
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTG 175
PV+A+++ RV +F+G K +S SS L +NPD P+ L+ W+ T+ N F +S
Sbjct: 527 PVLALRSVRVGDFKG-KNVSTIGSSFLKINPDFPDAESLRQWYITEGKNAAFISLSMEGS 585
Query: 176 GMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQ----DCNK 231
GMG + + +I+ + LG +K D+ +V+G I N Y AC ++ CNK
Sbjct: 586 GMG--RTDDRKTIEQIKAENLGRSEKPDWITVKGTISHISTDNFCYPACTTEVNGTRCNK 643
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV- 290
KV + +GM++C+KC + YR +L I D+T + + T F + + I+G+ AQ++
Sbjct: 644 KVTNNGDGMWQCDKCEQSTPNCEYRYMLQCQIQDYTGTSYATAFHDAGKDIIGLPAQDLY 703
Query: 291 ---GESTEDHP---ALKKALFTQYIFRLRAKLEHYNGTKKI 325
E +D ++K F ++F+L+ K E +N ++
Sbjct: 704 RIKHEEQDDEKFADIIQKVRFELFLFKLKVKEEVFNDEPRV 744
>gi|15242405|ref|NP_199353.1| replication factor-A protein 1-like protein [Arabidopsis thaliana]
gi|9758730|dbj|BAB09168.1| replication protein A1-like [Arabidopsis thaliana]
gi|332007861|gb|AED95244.1| replication factor-A protein 1-like protein [Arabidopsis thaliana]
Length = 853
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 140/431 (32%), Positives = 210/431 (48%), Gaps = 79/431 (18%)
Query: 427 NNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD 486
N + R + P + +PI +L+PYQ +WTIK RVT+K +R +NN RG GKLFS DLLD
Sbjct: 286 NRGPVARNEAPPRI--NPIAALNPYQGRWTIKVRVTSKADLRRFNNPRGEGKLFSFDLLD 343
Query: 487 -ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVI 545
+ GEIR T FND ++F D I VY IS LKPA K F+ + NDYE+ ++T+
Sbjct: 344 ADGGEIRVTCFNDAVDQFFDKIVVGNVYLISRGNLKPAQKNFNHLPNDYEIHLDSASTIQ 403
Query: 546 PCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRD 605
PC +D G +P + F + I + + DV+G+ + ++ K N KR
Sbjct: 404 PCEDD--GTIPRYHFHFRNIGDIENMENNSTTDVIGIVSSISPTVAIMRK-NLTEVQKRS 460
Query: 606 ITLVDQSQASVTMTLWG--------KEAETFDASNKPVIAVKAARVSEFQGNLL------ 651
+ L D S SV +T+WG K D+ PV+A+KA R+ EF G +
Sbjct: 461 LQLKDMSGRSVEVTMWGNFCNAEGQKLQNLCDSGVFPVLALKAGRIGEFNGKQVSTIGAS 520
Query: 652 --------------------------------------------LMREIQDQQLGMGDKA 667
++ +I+D++LG +K
Sbjct: 521 QFFIEPDFPEARELRQWYEREGRNAHFTSISREFSGVGRQEVRKVIAQIKDEKLGTSEKP 580
Query: 668 DYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLI 723
D+ +V I + N Y ACP + C+KKV + +G +RCEKC+K + YR I
Sbjct: 581 DWITVCATISFMKVENFCYTACPIMNGDRPCSKKVTNNGDGTWRCEKCDKCVDECDYRYI 640
Query: 724 LPVMIGDWTNSVWVTLFQNEAESILGVTAQEV---------GESTEDHPALKKALFTQYI 774
L + + D T+ W T FQ E I+G++A+++ E ED ++ FT+YI
Sbjct: 641 LQIQLQDHTDLTWATAFQEAGEEIMGMSAKDLYYVKYENQDEEKFED--IIRSVAFTKYI 698
Query: 775 FRLRAKLEHYN 785
F+L+ K E Y+
Sbjct: 699 FKLKIKEETYS 709
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 106/343 (30%), Positives = 175/343 (51%), Gaps = 30/343 (8%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K F+ + NDYE+ ++T+ PC +D G +P + F + I + + DV+G
Sbjct: 380 PAQKNFNHLPNDYEIHLDSASTIQPCEDD--GTIPRYHFHFRNIGDIENMENNSTTDVIG 437
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG--------KEAETFDASNK 116
+ + ++ K N KR + L D S SV +T+WG K D+
Sbjct: 438 IVSSISPTVAIMRK-NLTEVQKRSLQLKDMSGRSVEVTMWGNFCNAEGQKLQNLCDSGVF 496
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTG 175
PV+A+KA R+ EF G K +S +S + PD PE +L+ W+ + N F +S+
Sbjct: 497 PVLALKAGRIGEFNG-KQVSTIGASQFFIEPDFPEARELRQWYEREGRNAHFTSISREFS 555
Query: 176 GMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNK 231
G+G ++ +I+D++LG +K D+ +V I + N Y ACP + C+K
Sbjct: 556 GVGRQEVRKVIA--QIKDEKLGTSEKPDWITVCATISFMKVENFCYTACPIMNGDRPCSK 613
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV- 290
KV + +G +RCEKC+K + YR IL + + D T+ W T FQ E I+G++A+++
Sbjct: 614 KVTNNGDGTWRCEKCDKCVDECDYRYILQIQLQDHTDLTWATAFQEAGEEIMGMSAKDLY 673
Query: 291 --------GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
E ED ++ FT+YIF+L+ K E Y+ +++
Sbjct: 674 YVKYENQDEEKFED--IIRSVAFTKYIFKLKIKEETYSDEQRV 714
Score = 42.4 bits (98), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 17/156 (10%)
Query: 289 EVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTK-KIPDGVNINSFAMLATQLNDIITD 347
EV T+ P L+ +L E N K + DG ++ + ML T LN ++
Sbjct: 17 EVTSETDMMPVLQVTELKLIQSKLHQNQESSNRYKFLLSDGTDL-AAGMLNTSLNSLVNQ 75
Query: 348 GTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILEL-------NIIKPGTEIGFKIGNPQ- 399
GT+ +++++ YI + + + R +++I++L NII E G NPQ
Sbjct: 76 GTIQLGSVIRLTHYICNLIQT-----RRIVVIMQLEVIVEKCNIIGNPKEPGHSSINPQR 130
Query: 400 -PLNTNTDNSSTQQTPAATNTNGSN-GVHNNVAIPR 433
+NT ++ S QQ ++ NG GV N P+
Sbjct: 131 GGVNTQSNGGSEQQQARRSDVNGGRYGVSANSPQPQ 166
>gi|453084498|gb|EMF12542.1| replication factor A 1, rfa1 [Mycosphaerella populorum SO2202]
Length = 624
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 200/344 (58%), Gaps = 52/344 (15%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNII-------KP 387
M++ Q N +IT+GTL + + ++K + + V ++ +LII++L+++ K
Sbjct: 58 GMISMQSNHLITEGTLKKGMVCRLKSFQANFVK-----DKHILIIIDLDVLQEYGEQEKL 112
Query: 388 GTEIGFKIGN---------PQPLNTNTDN--SSTQQTPAA-----------TNTNGS--N 423
GT + + G PQP N +N QQ P A + TNG+ N
Sbjct: 113 GTPVAIEGGQKPEAQAEVKPQPGNITGNNFYGQPQQKPQAPVKQEPQRSLPSRTNGASHN 172
Query: 424 GVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSID 483
G H N+ PI ++SPY +KWTIKAR T+K I+ W+N G GKLFS +
Sbjct: 173 GPHGNIT-------------PIEAISPYTHKWTIKARCTHKGDIKTWHNKNGEGKLFSAN 219
Query: 484 LLDESGEIRATMFNDECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHST 542
LDESGEIRATMFND+ +++H+++++ VYYIS+ C ++ A K+FS++ NDYE++F + T
Sbjct: 220 FLDESGEIRATMFNDQVDQWHEVLQEGSVYYISSPCRVQLAKKQFSNLPNDYELTFENQT 279
Query: 543 TVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYM 602
V +++ +P V+Y F+ ++ + + D IDV+GV + E++ + KT K Y
Sbjct: 280 LVEKAEDND--GVPQVRYNFITIEALQTVEKDSTIDVIGVVSEVGEVNEIVSKTTSKPYS 337
Query: 603 KRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEF 646
KRD+TLVD + +V +T+WGK AE+FDA + VIA K +V +F
Sbjct: 338 KRDLTLVDDTGYNVRLTIWGKTAESFDAQPESVIAFKGVKVGDF 381
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/356 (33%), Positives = 193/356 (54%), Gaps = 19/356 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ NDYE++F + T V +++ +P V+Y F+ ++ + + D IDV+GV
Sbjct: 260 AKKQFSNLPNDYELTFENQTLVEKAEDND--GVPQVRYNFITIEALQTVEKDSTIDVIGV 317
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ E++ + KT K Y KRD+TLVD + +V +T+WGK AE+FDA + VIA K +
Sbjct: 318 VSEVGEVNEIVSKTTSKPYSKRDLTLVDDTGYNVRLTIWGKTAESFDAQPESVIAFKGVK 377
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST----QTNTRFEPVSQRTGGMGGGA 181
V +F G++LSL S +++NP+I E KL+GW+S +T G GG
Sbjct: 378 VGDFG-GRSLSLLSSGSMNVNPEIDEAFKLKGWYSASGHNETFASHANTMSTAGATGGAG 436
Query: 182 AGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD---CNKKVIDQNN 238
+ + +++D+ LGM D D+ S + I + N Y AC + D CNKKV++
Sbjct: 437 RNDTKTISQVRDENLGMTDDTDWFSTKATIIYIKQDNFAYPACQTTDPQPCNKKVLEVEE 496
Query: 239 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA------QEVGE 292
G +RCEKC+K + + YR I+ V + D T +W++ F + ILG+ A +E G+
Sbjct: 497 GNWRCEKCDKSWPSPKYRYIISVNVSDHTGQIWLSCFDEVGQQILGMPANDLMAMKEEGD 556
Query: 293 STEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNIN---SFAMLATQLNDII 345
A A YIFR +AK++ + +++ V + A +L DII
Sbjct: 557 DKRVSEAFSDANCKSYIFRCKAKMDTFQDQQRVRYQVQYARTIDYVQEAKRLADII 612
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 10/168 (5%)
Query: 626 ETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT 685
ETF AS+ ++ A + + + +++D+ LGM D D+ S + I + N
Sbjct: 417 ETF-ASHANTMSTAGATGGAGRNDTKTISQVRDENLGMTDDTDWFSTKATIIYIKQDNFA 475
Query: 686 YKACPSQD---CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQN 742
Y AC + D CNKKV++ G +RCEKC+K + + YR I+ V + D T +W++ F
Sbjct: 476 YPACQTTDPQPCNKKVLEVEEGNWRCEKCDKSWPSPKYRYIISVNVSDHTGQIWLSCFDE 535
Query: 743 EAESILGVTA------QEVGESTEDHPALKKALFTQYIFRLRAKLEHY 784
+ ILG+ A +E G+ A A YIFR +AK++ +
Sbjct: 536 VGQQILGMPANDLMAMKEEGDDKRVSEAFSDANCKSYIFRCKAKMDTF 583
>gi|169769542|ref|XP_001819241.1| replication factor A protein 1 [Aspergillus oryzae RIB40]
gi|83767099|dbj|BAE57239.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391863708|gb|EIT73008.1| single-stranded DNA-binding replication protein A [Aspergillus
oryzae 3.042]
Length = 605
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 127/325 (39%), Positives = 192/325 (59%), Gaps = 26/325 (8%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLATQ N +T G L + V++K + + S + +LIIL+L +++ E KI
Sbjct: 62 MLATQANRFVTSGQLRKGCFVRLKSF-----QANSVKGKKILIILDLEVLQDLGE-AEKI 115
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAP-------------VVQT 442
G P+PL + T+ Q T SNG + + Q AP
Sbjct: 116 GEPKPLESKTEEEEKSQP----TTISSNGFYGSKIQGGQLQAPNKSAQPQPAAASAHATI 171
Query: 443 HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNR 502
+PI ++SPY +KWTIKAR T+K+ IR W+N G GKLFS++LLD+SGEIRAT FND+C+
Sbjct: 172 YPIEAISPYSHKWTIKARCTSKSNIRTWHNRNGDGKLFSVNLLDDSGEIRATGFNDQCDM 231
Query: 503 FHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC 561
+D+ ++ VYYIS+ C +K A K+F+++NNDYE++F TV+ ED+ ++P +++
Sbjct: 232 LYDVFQEGSVYYISSPCGVKLAKKQFTNLNNDYELTFERD-TVVEKAEDQ-ADVPQIRFS 289
Query: 562 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
F + + + D IDV+GV + AE+S + KT K Y KR++TLVD + SV +T+W
Sbjct: 290 FTTIGDLQSVEKDTTIDVIGVLKEVAEVSQIMSKTTNKPYNKRELTLVDSTGFSVRLTVW 349
Query: 622 GKEAETFDASNKPVIAVKAARVSEF 646
G A F+ + + VIA K +VS+F
Sbjct: 350 GSTALNFNVTPESVIAFKGVKVSDF 374
Score = 185 bits (470), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 107/330 (32%), Positives = 185/330 (56%), Gaps = 16/330 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+F+++NNDYE++F T V+ ED+ ++P +++ F + + + D IDV+GV
Sbjct: 253 AKKQFTNLNNDYELTFERDT-VVEKAEDQ-ADVPQIRFSFTTIGDLQSVEKDTTIDVIGV 310
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ AE+S + KT K Y KR++TLVD + SV +T+WG A F+ + + VIA K +
Sbjct: 311 LKEVAEVSQIMSKTTNKPYNKRELTLVDSTGFSVRLTVWGSTALNFNVTPESVIAFKGVK 370
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
VS+F G++LSL S ++++PDI E HKL+GW+ Q + V M G AA
Sbjct: 371 VSDFG-GRSLSLLSSGSMTVDPDIEEAHKLKGWYDAQGR---DGVFASHASMPGVAASTT 426
Query: 186 LL-----MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGM 240
L + +++++QLGM D+ Y S++ + + Y AC S+ CNKKV + + G
Sbjct: 427 KLEQFKTVAQVKEEQLGMSDEVAYFSLKATVIYIKQDTMCYPACLSEGCNKKVTELDPGQ 486
Query: 241 YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPAL 300
+RCE+C+K YR I+ + + D T ++++ F ++G +A ++ E ++
Sbjct: 487 WRCERCDKTHPRPEYRYIMLISVSDHTGQLYLSCFDEVGRYMMGTSADQLMEIRQNDDKA 546
Query: 301 KKALFTQ-----YIFRLRAKLEHYNGTKKI 325
+F + FR RAK++++ ++I
Sbjct: 547 AGDIFQDANCRTWNFRCRAKIDNFGDQQRI 576
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 87/168 (51%), Gaps = 9/168 (5%)
Query: 622 GKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRG 681
G++ ++ P +A ++ +F+ + +++++QLGM D+ Y S++ + +
Sbjct: 407 GRDGVFASHASMPGVAASTTKLEQFK----TVAQVKEEQLGMSDEVAYFSLKATVIYIKQ 462
Query: 682 SNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQ 741
Y AC S+ CNKKV + + G +RCE+C+K YR I+ + + D T ++++ F
Sbjct: 463 DTMCYPACLSEGCNKKVTELDPGQWRCERCDKTHPRPEYRYIMLISVSDHTGQLYLSCFD 522
Query: 742 NEAESILGVTAQEVGESTEDHPALKKALFTQ-----YIFRLRAKLEHY 784
++G +A ++ E ++ +F + FR RAK++++
Sbjct: 523 EVGRYMMGTSADQLMEIRQNDDKAAGDIFQDANCRTWNFRCRAKIDNF 570
>gi|146420901|ref|XP_001486403.1| hypothetical protein PGUG_02074 [Meyerozyma guilliermondii ATCC
6260]
Length = 469
Score = 222 bits (566), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 134/416 (32%), Positives = 203/416 (48%), Gaps = 76/416 (18%)
Query: 443 HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNR 502
+PI LSPYQN W IKARV+ K IR+W+NARG GKLF+++ LDES EIRAT FND +
Sbjct: 25 NPIELLSPYQNNWRIKARVSFKGDIRKWSNARGEGKLFNVNFLDESDEIRATAFNDVAEQ 84
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F++ +E+ KVY + ++ A +FS + + YE++ T + C + ++P + + F
Sbjct: 85 FYNTLEEGKVYTVERARIQQAKPQFSHLTHPYELALDKDTVITECF--DTSDVPKLHFNF 142
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
L I + +DV+GV A + +T K+ K + +R+IT+VD S ++ + LW
Sbjct: 143 TKLDKIQAAEVNAVVDVIGVLKTANPVFQITAKSTGKAFDRRNITIVDDSNFAIDIGLWN 202
Query: 623 KEAETFDASNKPVIAVKAARVSEFQGNLLLMRE--------------------------- 655
+ A F+ S VIA K +V +F G L +
Sbjct: 203 QTALEFNTSEGSVIAFKGCKVQDFGGRSLTLTHSGSMVVNPDTPEAYQLKGWYDNQGMNE 262
Query: 656 ------------------------IQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKAC-- 689
Q+ LGM +K D+ SV+ I F+ N +Y AC
Sbjct: 263 NFKSLKVEAGPNQNYIKNRKTILAAQEDNLGMHEKPDFFSVKATISYFKTDNFSYPACSN 322
Query: 690 --------PSQD---CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVT 738
P Q CN+KV++Q++G +RCEKCN +R IL I D T +W T
Sbjct: 323 TVPGNSQAPGQQENTCNRKVLEQSDG-WRCEKCNITLPEPLHRYILNCSITDETGQLWTT 381
Query: 739 LFQNEAESILGVTA---------QEVGESTEDHPALKKALFTQYIFRLRAKLEHYN 785
LF EA + G++A Q++ ES E ++ ++ FRLRA+ + YN
Sbjct: 382 LFDQEARKLFGMSAGDLINLKEKQDMNESNEFADLMESITMKEFNFRLRARQDSYN 437
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 177/343 (51%), Gaps = 28/343 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A +FS + + YE++ T + C + ++P + + F L I + +DV+GV
Sbjct: 105 AKPQFSHLTHPYELALDKDTVITECFD--TSDVPKLHFNFTKLDKIQAAEVNAVVDVIGV 162
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
A + +T K+ K + +R+IT+VD S ++ + LW + A F+ S VIA K +
Sbjct: 163 LKTANPVFQITAKSTGKAFDRRNITIVDDSNFAIDIGLWNQTALEFNTSEGSVIAFKGCK 222
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAGN 184
V +F GG++L+L+ S + +NPD PE ++L+GW+ Q N F+ + + G N
Sbjct: 223 VQDF-GGRSLTLTHSGSMVVNPDTPEAYQLKGWYDNQGMNENFKSL-KVEAGPNQNYIKN 280
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKAC----------PSQD---CNK 231
+ Q+ LGM +K D+ SV+ I F+ N +Y AC P Q CN+
Sbjct: 281 RKTILAAQEDNLGMHEKPDFFSVKATISYFKTDNFSYPACSNTVPGNSQAPGQQENTCNR 340
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA---- 287
KV++Q++G +RCEKCN +R IL I D T +W TLF EA + G++A
Sbjct: 341 KVLEQSDG-WRCEKCNITLPEPLHRYILNCSITDETGQLWTTLFDQEARKLFGMSAGDLI 399
Query: 288 -----QEVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
Q++ ES E ++ ++ FRLRA+ + YNG +I
Sbjct: 400 NLKEKQDMNESNEFADLMESITMKEFNFRLRARQDSYNGNVRI 442
>gi|255557709|ref|XP_002519884.1| replication factor A 1, rfa1, putative [Ricinus communis]
gi|223540930|gb|EEF42488.1| replication factor A 1, rfa1, putative [Ricinus communis]
Length = 901
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 139/445 (31%), Positives = 220/445 (49%), Gaps = 82/445 (18%)
Query: 411 QQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREW 470
QQ P + G V N A PR PI +L+PYQ +WTIKARVT K +R +
Sbjct: 262 QQPPPMYSNRGP--VAKNEAPPR--------IMPISALNPYQGRWTIKARVTAKGELRHY 311
Query: 471 NNARGSGKLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSS 529
NN RG GK+FS DLLD + GEIR FN ++F+ IE KVY IS LKPA K F+
Sbjct: 312 NNVRGDGKVFSFDLLDSDGGEIRVICFNTVADQFYHQIEAGKVYLISRGNLKPAQKTFNH 371
Query: 530 INNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAEL 589
++ND E+ ++ + PC ED+ +P ++ F P+ + + + +D++G+ +
Sbjct: 372 LHNDLEIFLESNSVIQPCFEDDDA-IPRQQFHFRPISEVEGMDNNSVVDIIGMVSCITPV 430
Query: 590 SSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK----EAETF----DASNKPVIAVKAA 641
+S+ K +T KR + L D S SV +TLWG E + D+ PV+AVK+
Sbjct: 431 ASIMRKNGTET-QKRTLQLKDNSGRSVELTLWGNFCNAEGQRLQNMCDSGGFPVLAVKSG 489
Query: 642 RVSEFQGNLL-------------------------------------------------- 651
RVS+F G +
Sbjct: 490 RVSDFNGKAVGTISTSQLFIEPDIPEARRLKEWFEKEGRNTPSVSISRELSSVGRSEIHK 549
Query: 652 LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYR 707
+ +I+D++LG +K D+ ++ + + N Y ACP + C+KKV + +G +R
Sbjct: 550 TISQIKDEKLGTSEKPDWITINATVIYIKADNFCYTACPIMAGDRPCSKKVTNNGDGKWR 609
Query: 708 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG----ESTEDHP 763
CEKC++ + YR IL + + D T WVT FQ E I+G++A+++ E+ +D
Sbjct: 610 CEKCDQSMDECDYRYILQLQLQDHTGITWVTAFQESGEEIMGISAKDLHFMKYENQDDES 669
Query: 764 ---ALKKALFTQYIFRLRAKLEHYN 785
L++ LF++++ +L+ K E ++
Sbjct: 670 FSKILRQVLFSKFVIKLKVKEETFS 694
Score = 169 bits (427), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 100/341 (29%), Positives = 182/341 (53%), Gaps = 25/341 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K F+ ++ND E+ ++ + PC ED+ +P ++ F P+ + + + +D++G
Sbjct: 364 PAQKTFNHLHNDLEIFLESNSVIQPCFEDDDA-IPRQQFHFRPISEVEGMDNNSVVDIIG 422
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK----EAETF----DASNK 116
+ ++S+ K +T KR + L D S SV +TLWG E + D+
Sbjct: 423 MVSCITPVASIMRKNGTET-QKRTLQLKDNSGRSVELTLWGNFCNAEGQRLQNMCDSGGF 481
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTG 175
PV+AVK+ RVS+F G ++S S + + PDIPE +L+ WF + NT +S+
Sbjct: 482 PVLAVKSGRVSDFNGKAVGTISTSQLF-IEPDIPEARRLKEWFEKEGRNTPSVSISRELS 540
Query: 176 GMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNK 231
+G + +I+D++LG +K D+ ++ + + N Y ACP + C+K
Sbjct: 541 SVGRSEIHKTI--SQIKDEKLGTSEKPDWITINATVIYIKADNFCYTACPIMAGDRPCSK 598
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG 291
KV + +G +RCEKC++ + YR IL + + D T WVT FQ E I+G++A+++
Sbjct: 599 KVTNNGDGKWRCEKCDQSMDECDYRYILQLQLQDHTGITWVTAFQESGEEIMGISAKDLH 658
Query: 292 ----ESTEDHP---ALKKALFTQYIFRLRAKLEHYNGTKKI 325
E+ +D L++ LF++++ +L+ K E ++ +++
Sbjct: 659 FMKYENQDDESFSKILRQVLFSKFVIKLKVKEETFSDEQRV 699
>gi|242086615|ref|XP_002439140.1| hypothetical protein SORBIDRAFT_09g001260 [Sorghum bicolor]
gi|190688743|gb|ACE86406.1| replication protein A1-like protein [Sorghum bicolor]
gi|241944425|gb|EES17570.1| hypothetical protein SORBIDRAFT_09g001260 [Sorghum bicolor]
Length = 933
Score = 222 bits (565), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 134/408 (32%), Positives = 206/408 (50%), Gaps = 67/408 (16%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNR 502
P+ L+PYQN WTIKARVT KT +R +NN G+GK+FS D+LD + GEIR T FN + ++
Sbjct: 313 PVAHLNPYQNTWTIKARVTAKTDLRHYNNKNGAGKVFSFDILDGQGGEIRVTCFNAQADQ 372
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F D+IE DKVY IS ++K A KKF+S+N++YE++ +++ C +D+ N+P Y F
Sbjct: 373 FFDLIEVDKVYLISKGSVKAAQKKFNSLNHEYEIALDFRSSIEVCVDDD-SNIPRPHYNF 431
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
+ I + +D++G+ ++ K + KR++ L D S S+ +TLWG
Sbjct: 432 RQISEIENLEAGTIVDLIGIVTSVGPSGTIIRKLDNSEVQKRNLQLKDMSGRSIELTLWG 491
Query: 623 K--EAE------TFDASNKPVIAVKAARVSEFQGNLL-------------------LMR- 654
K +AE D+ PV+A+K ARV+EF G + L R
Sbjct: 492 KFCDAEGQQLQLQCDSGLNPVLALKGARVTEFSGKSVNTTGSTHVKVDPDFPEAESLRRW 551
Query: 655 ----------------------------EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTY 686
+I+D+ LG +K D+ +V+G I N Y
Sbjct: 552 YATEGKTAACVSLSVVSMGRTDVRKAVAQIKDEDLGRSEKPDFITVKGAISHLTTDNFCY 611
Query: 687 KACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQN 742
AC + CNKKVI+ +G ++C+KC+K YR +L + D T + T FQ
Sbjct: 612 PACTLEVNGKVCNKKVINNGDGTWQCDKCDKSLPNCEYRYLLQCQVQDHTGVTYATAFQE 671
Query: 743 EAESILGVTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKLEHYN 785
I+G +A E+ E+ P L+ + Q++F+L+ E YN
Sbjct: 672 AGIEIVGHSAYELYNIREEDPERFAEILQGVRWQQFLFKLKVYEETYN 719
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 173/337 (51%), Gaps = 22/337 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A KKF+S+N++YE++ +++ C +D+ N+P Y F + I + +D++G+
Sbjct: 393 AQKKFNSLNHEYEIALDFRSSIEVCVDDD-SNIPRPHYNFRQISEIENLEAGTIVDLIGI 451
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK--EAE------TFDASNKP 117
++ K + KR++ L D S S+ +TLWGK +AE D+ P
Sbjct: 452 VTSVGPSGTIIRKLDNSEVQKRNLQLKDMSGRSIELTLWGKFCDAEGQQLQLQCDSGLNP 511
Query: 118 VIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGM 177
V+A+K ARV+EF G K+++ + S+ + ++PD PE L+ W++T+ T VS M
Sbjct: 512 VLALKGARVTEFSG-KSVNTTGSTHVKVDPDFPEAESLRRWYATEGKTA-ACVSLSVVSM 569
Query: 178 GGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNKKV 233
G + +I+D+ LG +K D+ +V+G I N Y AC + CNKKV
Sbjct: 570 GRTDVRKAVA--QIKDEDLGRSEKPDFITVKGAISHLTTDNFCYPACTLEVNGKVCNKKV 627
Query: 234 IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGES 293
I+ +G ++C+KC+K YR +L + D T + T FQ I+G +A E+
Sbjct: 628 INNGDGTWQCDKCDKSLPNCEYRYLLQCQVQDHTGVTYATAFQEAGIEIVGHSAYELYNI 687
Query: 294 TEDHPA-----LKKALFTQYIFRLRAKLEHYNGTKKI 325
E+ P L+ + Q++F+L+ E YN ++
Sbjct: 688 REEDPERFAEILQGVRWQQFLFKLKVYEETYNDEHRV 724
>gi|121715180|ref|XP_001275199.1| replication factor A 1, rfa1 [Aspergillus clavatus NRRL 1]
gi|119403356|gb|EAW13773.1| replication factor A 1, rfa1 [Aspergillus clavatus NRRL 1]
Length = 603
Score = 221 bits (564), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 125/323 (38%), Positives = 194/323 (60%), Gaps = 24/323 (7%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLATQ N +T G L + V++K + + S + +LIIL+L +++ E KI
Sbjct: 62 MLATQANHFVTSGMLKKGCFVRLKSF-----QANSVKGKKILIILDLEVLQELGE-AEKI 115
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASA-------PVVQTH----P 444
G P+PL +D ++ P T T SNG + + P++ + P+ TH P
Sbjct: 116 GEPKPLENKSD---VEEKPQPT-TISSNGFYGSKIQPQRVESGVQPTRSPLASTHATIYP 171
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
I +SP+ NKWTIKAR T+K+ I+ W+N G+LFS++LLD+SGEIRAT FN++C+ +
Sbjct: 172 IEYISPFSNKWTIKARCTSKSTIKTWHNRNSEGRLFSVNLLDDSGEIRATGFNEQCDMLY 231
Query: 505 DMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
D+ ++ VYYIS C ++ A K+F+++NNDYE++F TV+ ED+ ++P V++ F
Sbjct: 232 DVFQEGGVYYISTPCRVQIAKKQFTNLNNDYEITFERG-TVVEKAEDQ-SDVPQVRFNFT 289
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
+ + + D IDV+GV + E+S + K+ K Y KR++TLVD S SV +T+WG
Sbjct: 290 TVGDLQSVEKDTTIDVVGVLKEVGEISQIVSKSTNKPYDKRELTLVDSSGFSVRLTVWGT 349
Query: 624 EAETFDASNKPVIAVKAARVSEF 646
A F A+ + VIA K +VS+F
Sbjct: 350 TALNFSATPESVIAFKGVKVSDF 372
Score = 196 bits (498), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 122/357 (34%), Positives = 196/357 (54%), Gaps = 15/357 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+F+++NNDYE++F T V+ ED+ ++P V++ F + + + D IDV+GV
Sbjct: 251 AKKQFTNLNNDYEITFERGT-VVEKAEDQ-SDVPQVRFNFTTVGDLQSVEKDTTIDVVGV 308
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ E+S + K+ K Y KR++TLVD S SV +T+WG A F A+ + VIA K +
Sbjct: 309 LKEVGEISQIVSKSTNKPYDKRELTLVDSSGFSVRLTVWGTTALNFSATPESVIAFKGVK 368
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ--TNTRFEPVSQRTGGMGGGAAG 183
VS+F G ++LSL S ++++PDI E H+L+GW+ Q T S + G
Sbjct: 369 VSDFGG-RSLSLLSSGSMTIDPDIEEAHRLKGWYDAQGRHETFSSHASMSSASSSAGKLD 427
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ +I+++QLGM D+A Y S R + + Y AC SQ CNKKV + + G +RC
Sbjct: 428 RFKTVAQIREEQLGMSDEAAYFSCRATVIYIKQDTICYPACLSQGCNKKVTELDPGQWRC 487
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
E C+K YR I+ + + D T +W++ F +LG++A E+ + + L
Sbjct: 488 ESCDKTHLRPEYRYIMLINVSDHTGQLWLSCFDEVGRQLLGISADELMDMRQSESNLAGE 547
Query: 304 LFTQ-----YIFRLRAKLEHYNGTKKIPDGVN----INSFAMLATQLNDIITDGTLS 351
+F + + FR RAKL+HY +I V+ IN ++ A++L ++I LS
Sbjct: 548 VFQEANCRTWNFRCRAKLDHYGDQPRIRYQVSSAKAIN-YSEEASRLMNLIQSYNLS 603
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 5/135 (3%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 714
+I+++QLGM D+A Y S R + + Y AC SQ CNKKV + + G +RCE C+K
Sbjct: 434 QIREEQLGMSDEAAYFSCRATVIYIKQDTICYPACLSQGCNKKVTELDPGQWRCESCDKT 493
Query: 715 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQ-- 772
YR I+ + + D T +W++ F +LG++A E+ + + L +F +
Sbjct: 494 HLRPEYRYIMLINVSDHTGQLWLSCFDEVGRQLLGISADELMDMRQSESNLAGEVFQEAN 553
Query: 773 ---YIFRLRAKLEHY 784
+ FR RAKL+HY
Sbjct: 554 CRTWNFRCRAKLDHY 568
>gi|296828318|ref|XP_002851311.1| replication factor-A protein 1 [Arthroderma otae CBS 113480]
gi|238838865|gb|EEQ28527.1| replication factor-A protein 1 [Arthroderma otae CBS 113480]
Length = 599
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 160/521 (30%), Positives = 254/521 (48%), Gaps = 79/521 (15%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
ML TQLN+ +T+G L + V++ + VS V + +LII+ L ++ E +I
Sbjct: 56 MLPTQLNNYVTEGLLRRGSFVRLTNFQVSVVKG-----KHLLIIMGLEVLSALGE-AERI 109
Query: 396 GNPQPLNTNT-DNSSTQQTPAATNT--NGSNGVH-----NNVAIPRQASAPV-VQTHPIV 446
G+P+PL + D+ Q T ++N N + NV PR I
Sbjct: 110 GDPKPLEPKSGDDMGGQSTTLSSNEFYNAPQAQNPPQHFQNVQRPRTTGMTTNANIFSIE 169
Query: 447 SLSPY-QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHD 505
+LSP+ NKWTIKAR T+K+ I+ W N G GKLFS++LLD+SGEIRAT F D+C+ +
Sbjct: 170 ALSPFANNKWTIKARCTHKSDIKTWKNTYGEGKLFSVNLLDDSGEIRATAFKDQCDLLYP 229
Query: 506 MIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP 564
+ E+ VYYIS+ CT+K A K++S++NNDYE++F T V+ ED+ ++P V++ F
Sbjct: 230 VFEEGSVYYISSPCTVKMAKKEYSNVNNDYELTFDRDT-VVEKAEDQ-NDVPQVRFNFTG 287
Query: 565 LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV-------- 616
L + I IDVLG+ + S VT KT K Y KR++TLVD S SV
Sbjct: 288 LGNLQSIEKGTTIDVLGILKEVDTTSQVTSKTTGKPYDKRELTLVDNSGFSVRLTVWGNT 347
Query: 617 -------------------------TMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL 651
T++L + T D + +K ++ + N
Sbjct: 348 ATTFDTPPESVVAFKGVKVSDFGGRTLSLLSSGSITVDPDIEEAHRLKGWYDAQGKSNFF 407
Query: 652 L--------------------MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS 691
+ EI+D+Q+ + + +++ + + N Y ACP+
Sbjct: 408 TAYSSEGGSGGGGGSWPTFKTISEIRDEQVPTAENPENFALKATV-IHVKDNLCYPACPN 466
Query: 692 QDC-NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGV 750
+ C NKK+ + + CE+C + + YR IL + D T +W++ F ++I G+
Sbjct: 467 EACKNKKMTGGDLEQWHCERCERSYANPKYRYILSLNASDHTGQIWLSCFDEAGQAIFGM 526
Query: 751 TAQEVGESTED-----HPALKKALFTQYIFRLRAKLEHYNK 786
TA ++ ED + K A + + F+ RAKL+ Y +
Sbjct: 527 TADKLMRIKEDDEVAANEITKGATYCTWNFKCRAKLDTYQE 567
Score = 182 bits (462), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 112/322 (34%), Positives = 177/322 (54%), Gaps = 12/322 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K++S++NNDYE++F T V+ ED+ ++P V++ F L + I IDVLG+
Sbjct: 248 AKKEYSNVNNDYELTFDRDT-VVEKAEDQ-NDVPQVRFNFTGLGNLQSIEKGTTIDVLGI 305
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ S VT KT K Y KR++TLVD S SV +T+WG A TFD + V+A K +
Sbjct: 306 LKEVDTTSQVTSKTTGKPYDKRELTLVDNSGFSVRLTVWGNTATTFDTPPESVVAFKGVK 365
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAG-- 183
VS+F GG+TLSL S ++++PDI E H+L+GW+ Q + F GG GGG
Sbjct: 366 VSDF-GGRTLSLLSSGSITVDPDIEEAHRLKGWYDAQGKSNFFTAYSSEGGSGGGGGSWP 424
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDC-NKKVIDQNNGMYR 242
+ EI+D+Q+ + + +++ + + N Y ACP++ C NKK+ + +
Sbjct: 425 TFKTISEIRDEQVPTAENPENFALKATV-IHVKDNLCYPACPNEACKNKKMTGGDLEQWH 483
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED-----H 297
CE+C + + YR IL + D T +W++ F ++I G+TA ++ ED +
Sbjct: 484 CERCERSYANPKYRYILSLNASDHTGQIWLSCFDEAGQAIFGMTADKLMRIKEDDEVAAN 543
Query: 298 PALKKALFTQYIFRLRAKLEHY 319
K A + + F+ RAKL+ Y
Sbjct: 544 EITKGATYCTWNFKCRAKLDTY 565
>gi|302913119|ref|XP_003050848.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256731786|gb|EEU45135.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 611
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 160/523 (30%), Positives = 255/523 (48%), Gaps = 81/523 (15%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLATQ N ++ D L +IK+Y + + +++L+IL+L +++ I KI
Sbjct: 63 MLATQANHVVRDNKLVRGCFARIKQYTPNNLK-----GKNILVILDLEVVE-SLGIQDKI 116
Query: 396 GNPQPLNTNTDNSS-----------TQQTPAATNTNGSNGVHNNVAIP-RQASAPVVQTH 443
G P ++ ++ ++P R A +
Sbjct: 117 GEPVAVDAKPPGQEGAIAGGDFYGVKKEEQKPQPQQFQQQQQQQQSMPSRPAMHGGSNIY 176
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI LSP+ +KWTIKARVT+K+ I+ W+ A G GKLFS++LLDESGEI+AT FN++C+ F
Sbjct: 177 PIEGLSPFAHKWTIKARVTSKSDIKTWHKATGEGKLFSVNLLDESGEIKATGFNEQCDAF 236
Query: 504 HDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
+D +++ VYYIS C + A K+FS++ NDYE++F TVI ED+ N+P V++ F
Sbjct: 237 YDRLQEGSVYYISTPCRVSLAKKQFSNLPNDYELAFERD-TVIEKAEDQT-NVPQVRFNF 294
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
++ + + D +DV+GV + E+ + K + + + KR++TLVD + SV +T+WG
Sbjct: 295 CTIQELQSVEKDNTVDVIGVLKEVGEIGEIVSKKDGRPFQKRELTLVDDTGYSVRVTVWG 354
Query: 623 KEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRG-------- 674
K A +FDA + V+A K +VS+F G L + + D AD ++G
Sbjct: 355 KTANSFDAPAESVVAFKGTKVSDFGGKSLSLLSSGTMSVD-PDIADAHRLKGWYDSAGRT 413
Query: 675 -IIQVFRGSNTTYKACPSQDCNK---KVIDQNNGM----YRCEKCNKEF---NTFTY--- 720
+G + A +D K +V D+N GM Y K F +TF Y
Sbjct: 414 DTFATHQGMASMGNATGRKDEIKTISQVKDENLGMDDQAYYTIKATIVFMKQDTFCYPAC 473
Query: 721 -------------------------------RLILPVMIGDWTNSVWVTLFQNEAESILG 749
R IL + + D T+ W++ F + + ILG
Sbjct: 474 ASQGCNKKVTEMGDGTWHCEKCNVSHEKPEYRYILSLNVADHTSHQWLSCFDDSGQKILG 533
Query: 750 VTAQEVGESTE-DHP-----ALKKALFTQYIFRLRAKLEHYNK 786
TA E+ E E D P A ++A + FR RAK++++ +
Sbjct: 534 RTANEMMELKESDDPTKFTAAFEEANCKKLTFRCRAKMDNFGE 576
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 117/328 (35%), Positives = 188/328 (57%), Gaps = 12/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ NDYE++F T VI ED+ N+P V++ F ++ + + D +DV+GV
Sbjct: 257 AKKQFSNLPNDYELAFERDT-VIEKAEDQT-NVPQVRFNFCTIQELQSVEKDNTVDVIGV 314
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ E+ + K + + + KR++TLVD + SV +T+WGK A +FDA + V+A K +
Sbjct: 315 LKEVGEIGEIVSKKDGRPFQKRELTLVDDTGYSVRVTVWGKTANSFDAPAESVVAFKGTK 374
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGG--GAAG 183
VS+F GGK+LSL S +S++PDI + H+L+GW+ + T Q MG G
Sbjct: 375 VSDF-GGKSLSLLSSGTMSVDPDIADAHRLKGWYDSAGRTDTFATHQGMASMGNATGRKD 433
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ + +++D+ LGM D+A Y +++ I + Y AC SQ CNKKV + +G + C
Sbjct: 434 EIKTISQVKDENLGMDDQA-YYTIKATIVFMKQDTFCYPACASQGCNKKVTEMGDGTWHC 492
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHP---- 298
EKCN YR IL + + D T+ W++ F + + ILG TA E+ E E D P
Sbjct: 493 EKCNVSHEKPEYRYILSLNVADHTSHQWLSCFDDSGQKILGRTANEMMELKESDDPTKFT 552
Query: 299 -ALKKALFTQYIFRLRAKLEHYNGTKKI 325
A ++A + FR RAK++++ ++I
Sbjct: 553 AAFEEANCKKLTFRCRAKMDNFGEAQRI 580
>gi|452981313|gb|EME81073.1| hypothetical protein MYCFIDRAFT_29007 [Pseudocercospora fijiensis
CIRAD86]
Length = 621
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 123/342 (35%), Positives = 194/342 (56%), Gaps = 51/342 (14%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNII-------KP 387
ML++Q N +ITDG L + ++ ++ +Y + V ++ +LII+ L+++ K
Sbjct: 58 GMLSSQSNHLITDGHLKKGSVCRLTQYQANFVK-----DKHILIIMNLDVLHEYGEQDKL 112
Query: 388 GTEIGFKIGNP--------QPLNTNTDN--------------SSTQQTPAATNTNGSNGV 425
G+ + P QP N +N + P+ TN G
Sbjct: 113 GSPVALDAAKPEAQEDVKPQPGNIAGNNFYGQKPQQAQLQQQQQQRSLPSRTNGASHGGA 172
Query: 426 HNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL 485
H N+ PI ++SPYQ+KWTIKAR T+K I+ W+N G GKLFS + L
Sbjct: 173 HGNIT-------------PIEAVSPYQHKWTIKARCTSKGDIKTWHNKNGEGKLFSANFL 219
Query: 486 DESGEIRATMFNDECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTV 544
DE+ EIRATMFN++C++++D++++ VYYIS+ C ++ A K+FS++ NDYE++F T V
Sbjct: 220 DETSEIRATMFNEQCDQWYDVLQEGSVYYISSPCKVQLAKKQFSNLPNDYELTFERDTQV 279
Query: 545 IPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKR 604
+++ V P VKY F L+++ + D DV+GV D E++ + KT K Y KR
Sbjct: 280 EKADDEGV---PQVKYSFTNLESLQNVEKDTVTDVIGVLADVGEVNEIVSKTTSKPYSKR 336
Query: 605 DITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEF 646
++TLVD + +V +T+WGK AE+FDAS + V+A K +VS+F
Sbjct: 337 ELTLVDDTGYNVRLTIWGKVAESFDASPEAVVAFKGVKVSDF 378
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/357 (34%), Positives = 203/357 (56%), Gaps = 22/357 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ NDYE++F T V +++ V P VKY F L+++ + D DV+GV
Sbjct: 258 AKKQFSNLPNDYELTFERDTQVEKADDEGV---PQVKYSFTNLESLQNVEKDTVTDVIGV 314
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D E++ + KT K Y KR++TLVD + +V +T+WGK AE+FDAS + V+A K +
Sbjct: 315 LADVGEVNEIVSKTTSKPYSKRELTLVDDTGYNVRLTIWGKVAESFDASPEAVVAFKGVK 374
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQ---RTGGMGGGA 181
VS+F G++LSL S ++++PDI E +KL+GW+ + T+F + G GG
Sbjct: 375 VSDFG-GRSLSLLSSGSMNIDPDIDEAYKLKGWYQANGSTTQFASHANTMATVGATSGGR 433
Query: 182 AGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD---CNKKVIDQNN 238
+ +++++D+ LGM D D+ +++ I + N Y AC + D CNKKV + +N
Sbjct: 434 KDDTKTIQQVRDENLGMTDATDWFTLKATIVYIKQDNFAYAACQTTDPQPCNKKVTEVDN 493
Query: 239 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV------GE 292
G +RCEKC K ++ YR I+ V + D T +W++ F + +++LG+ A E+ G+
Sbjct: 494 GSWRCEKCEKNWDAPKYRYIMSVNVSDHTGQLWLSCFDDVGQAMLGMPANELMVAKEEGD 553
Query: 293 STEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDGV----NINSFAMLATQLNDII 345
A A ++F+ R K+++Y +++ V NI+ F + +L DII
Sbjct: 554 EKRVTDAFADANCKSFVFKCRCKMDNYQDQQRVRYQVQYANNID-FVRESKRLADII 609
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 87/164 (53%), Gaps = 9/164 (5%)
Query: 630 ASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKAC 689
AS+ +A A + + +++++D+ LGM D D+ +++ I + N Y AC
Sbjct: 417 ASHANTMATVGATSGGRKDDTKTIQQVRDENLGMTDATDWFTLKATIVYIKQDNFAYAAC 476
Query: 690 PSQD---CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAES 746
+ D CNKKV + +NG +RCEKC K ++ YR I+ V + D T +W++ F + ++
Sbjct: 477 QTTDPQPCNKKVTEVDNGSWRCEKCEKNWDAPKYRYIMSVNVSDHTGQLWLSCFDDVGQA 536
Query: 747 ILGVTAQEV------GESTEDHPALKKALFTQYIFRLRAKLEHY 784
+LG+ A E+ G+ A A ++F+ R K+++Y
Sbjct: 537 MLGMPANELMVAKEEGDEKRVTDAFADANCKSFVFKCRCKMDNY 580
>gi|241950583|ref|XP_002418014.1| replication factor-A protein 1, putative [Candida dubliniensis
CD36]
gi|223641353|emb|CAX43313.1| replication factor-A protein 1, putative [Candida dubliniensis
CD36]
Length = 623
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 148/543 (27%), Positives = 251/543 (46%), Gaps = 97/543 (17%)
Query: 332 NSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEI 391
++ ++ N+ I + + IVQ+ + + AT + +I ++ P +E
Sbjct: 56 STHGLIDESCNEYIKNNNCQRYAIVQVNAFSIF------ATQKHFFVIKNFEVLSPTSEK 109
Query: 392 GFK-------IGNPQPLN-----TNTDNSSTQQTPAATNT----NGSNGVHNNVA--IPR 433
N P T +S +++PA T +N ++V +P
Sbjct: 110 SHNNFIPVDTYFNEHPEEAHLTLTKKPDSLERESPAPGVTPPLAQSTNSFKSDVGSGVPA 169
Query: 434 QAS--APVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEI 491
Q+ P + PI ++SPYQN WTIKARV+ K +R W+N++G GK+F +LLDES EI
Sbjct: 170 QSKPPGPHRKVSPIETISPYQNNWTIKARVSYKGDLRTWSNSKGEGKVFGFNLLDESDEI 229
Query: 492 RATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDE 551
+A+ FN+ + H ++E+ KVYYIS + A KKF+++++ YE++F T + C ++
Sbjct: 230 KASAFNETAEKAHKLLEEGKVYYISKARVAAARKKFNTLSHPYELTFDKDTEITECFDE- 288
Query: 552 VGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ 611
++P + + FV L I + + IDVLG +T K+ + + +R+I +VD+
Sbjct: 289 -SDVPKLNFNFVKLDQIQNLEANSIIDVLGALKTVYPPFQITAKSTGRVFDRRNILVVDE 347
Query: 612 SQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMRE---------------- 655
+ V + LW A FD V+AVK +VS+F G L + +
Sbjct: 348 TGFGVELGLWNNTATDFDVEEGTVVAVKGCKVSDFGGRTLSLTQAGSIIPNPGTPESFKL 407
Query: 656 -----------------IQDQQLGMGDKADYCSVRGIIQVFRGS---------------- 682
I G A S+ ++ GS
Sbjct: 408 KGWYDNIGIHESFKSLKIDTGGSGADKIAQRISINRALEEHSGSTDKPDYFSIKASVTFC 467
Query: 683 ---NTTYKAC-----------PSQDCNKKVIDQN-NGMYRCEKCNKEFNTFTYRLILPVM 727
N Y AC P+Q CNKK++ Q+ +G +RCEKC + T+R +L
Sbjct: 468 KPENFAYPACPNLVNSADATRPAQTCNKKLVQQDHDGTWRCEKCAMTYEEPTWRYVLSCS 527
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKLE 782
+ D T +W+TLF ++A+ +LG+ A E+ + E++P + LF ++ R++A+ E
Sbjct: 528 VTDSTGHMWLTLFDDQAKKLLGIDATELIKKKEENPEQVNQIMNNTLFKEFSLRVKARQE 587
Query: 783 HYN 785
YN
Sbjct: 588 TYN 590
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/335 (31%), Positives = 178/335 (53%), Gaps = 21/335 (6%)
Query: 4 APANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVL 63
A A KKF+++++ YE++F T + C ++ ++P + + FV L I + + IDVL
Sbjct: 259 AAARKKFNTLSHPYELTFDKDTEITECFDE--SDVPKLNFNFVKLDQIQNLEANSIIDVL 316
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKA 123
G +T K+ + + +R+I +VD++ V + LW A FD V+AVK
Sbjct: 317 GALKTVYPPFQITAKSTGRVFDRRNILVVDETGFGVELGLWNNTATDFDVEEGTVVAVKG 376
Query: 124 ARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGGGAA 182
+VS+F GG+TLSL+ + + NP PE KL+GW+ + + F+ + TGG G
Sbjct: 377 CKVSDF-GGRTLSLTQAGSIIPNPGTPESFKLKGWYDNIGIHESFKSLKIDTGGSGADKI 435
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKAC-----------PSQDCNK 231
+ + ++ G DK DY S++ + + N Y AC P+Q CNK
Sbjct: 436 AQRISINRALEEHSGSTDKPDYFSIKASVTFCKPENFAYPACPNLVNSADATRPAQTCNK 495
Query: 232 KVIDQN-NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 290
K++ Q+ +G +RCEKC + T+R +L + D T +W+TLF ++A+ +LG+ A E+
Sbjct: 496 KLVQQDHDGTWRCEKCAMTYEEPTWRYVLSCSVTDSTGHMWLTLFDDQAKKLLGIDATEL 555
Query: 291 GESTEDHPA-----LKKALFTQYIFRLRAKLEHYN 320
+ E++P + LF ++ R++A+ E YN
Sbjct: 556 IKKKEENPEQVNQIMNNTLFKEFSLRVKARQETYN 590
>gi|392871534|gb|EJB12179.1| replication factor-a protein 1 (rpa1) [Coccidioides immitis RS]
Length = 607
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 123/335 (36%), Positives = 199/335 (59%), Gaps = 22/335 (6%)
Query: 330 NINSFA--MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKP 387
+I++F MLA+ LND++ +G L VQ+K + + V + +LI+L+L++++
Sbjct: 50 DISNFVQTMLASSLNDLVNNGALRRGCFVQLKSFQANFVK-----GKRILIVLDLDVLED 104
Query: 388 GTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGV--HNNVAIPRQASAPVVQT--- 442
E +IG+P+PL T + TP A +++G GV ++VA P++ V T
Sbjct: 105 LGECE-RIGDPKPLETKVAEVE-KPTPTAISSDGFYGVVSEHSVAQPQRHQRATVPTMAP 162
Query: 443 -----HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFN 497
+PI +LSPY +KWTIKAR TNK+ I++W N G G+LFS++LLD+SGEIRAT F
Sbjct: 163 THANIYPIEALSPYSHKWTIKARCTNKSAIKKWYNRNGEGRLFSVNLLDDSGEIRATAFK 222
Query: 498 DECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
++C+ + + E+ VYYIS+ C ++ A ++FS++NNDYE++F T + + E ++P
Sbjct: 223 EQCDLLYPLFEEGSVYYISSPCRVQMAKREFSNVNNDYELTFERDTVIERAEDHE--DVP 280
Query: 557 SVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
+++ F + + + IDVLGV ++ V K+ K Y KR++ LVD + SV
Sbjct: 281 QMRFNFTSIGHLHSVEKGTTIDVLGVLKTVEPVAEVPSKSTGKRYTKRELMLVDDTGYSV 340
Query: 617 TMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL 651
+T+WG A +FD V+A K +VS+F G L
Sbjct: 341 PLTIWGGMATSFDVMPDSVVAFKGVKVSDFGGRSL 375
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/328 (31%), Positives = 169/328 (51%), Gaps = 11/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A ++FS++NNDYE++F T + + E ++P +++ F + + + IDVLGV
Sbjct: 249 AKREFSNVNNDYELTFERDTVIERAEDHE--DVPQMRFNFTSIGHLHSVEKGTTIDVLGV 306
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
++ V K+ K Y KR++ LVD + SV +T+WG A +FD V+A K +
Sbjct: 307 LKTVEPVAEVPSKSTGKRYTKRELMLVDDTGYSVPLTIWGGMATSFDVMPDSVVAFKGVK 366
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTN-TRF--EPVSQRTGGMGGGAA 182
VS+F GG++LSL S ++ +PDI E HKL+GW+ Q +F +S+ G
Sbjct: 367 VSDF-GGRSLSLLNSGTITSDPDIEEAHKLKGWYDAQGKFDQFATHALSENAAISTGTRQ 425
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
+ E++D QLGM +K DY S+R + + Y AC + CNKKV+ + +
Sbjct: 426 DIYKAIVEVRDNQLGMTEKPDYFSLRATVVFIKQDTICYPACVQERCNKKVVQVDPEQWL 485
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPALK 301
CE C K YR IL + D T +W+ F +I+G+ A + E E D A
Sbjct: 486 CEHCEKSSLRPEYRYILSANVSDHTGQLWLNCFDEVGRAIMGMPANVLMELKESDDKAAS 545
Query: 302 KALF----TQYIFRLRAKLEHYNGTKKI 325
+A+ + + +AKL+++ ++
Sbjct: 546 EAILHATCQMWNLKCKAKLDNFQNQPRV 573
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 5/135 (3%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 714
E++D QLGM +K DY S+R + + Y AC + CNKKV+ + + CE C K
Sbjct: 433 EVRDNQLGMTEKPDYFSLRATVVFIKQDTICYPACVQERCNKKVVQVDPEQWLCEHCEKS 492
Query: 715 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPALKKALF--- 770
YR IL + D T +W+ F +I+G+ A + E E D A +A+
Sbjct: 493 SLRPEYRYILSANVSDHTGQLWLNCFDEVGRAIMGMPANVLMELKESDDKAASEAILHAT 552
Query: 771 -TQYIFRLRAKLEHY 784
+ + +AKL+++
Sbjct: 553 CQMWNLKCKAKLDNF 567
>gi|67972174|dbj|BAE02429.1| unnamed protein product [Macaca fascicularis]
Length = 268
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 114/246 (46%), Positives = 153/246 (62%), Gaps = 11/246 (4%)
Query: 92 VDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPE 151
+D S VT TLWG +A+ FD S +PV+A+K ARVS+F GG++LS+ SS + NPDIPE
Sbjct: 1 MDTSGKVVTATLWGDDADKFDGSRQPVLAIKGARVSDF-GGRSLSVLSSSTIIANPDIPE 59
Query: 152 CHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVR 208
+KL+GWF + + VS ++GG+GGG N + E++ + LG GDK DY S
Sbjct: 60 AYKLRGWFDAEGQA-LDGVSISDLKSGGVGGGNT-NWKTLYEVKSENLGQGDKPDYFSSV 117
Query: 209 GIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTN 268
+ R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF F YR+IL V I D+
Sbjct: 118 ATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQE 177
Query: 269 SVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYNGTK 323
+ WVT FQ AE+ILG A +GE + + + A F +IFR+R K+E YN
Sbjct: 178 NQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETYNDES 237
Query: 324 KIPDGV 329
+I V
Sbjct: 238 RIKASV 243
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 116/234 (49%), Gaps = 57/234 (24%)
Query: 609 VDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG-------------------- 648
+D S VT TLWG +A+ FD S +PV+A+K ARVS+F G
Sbjct: 1 MDTSGKVVTATLWGDDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEA 60
Query: 649 --------------------------------NLLLMREIQDQQLGMGDKADYCSVRGII 676
N + E++ + LG GDK DY S +
Sbjct: 61 YKLRGWFDAEGQALDGVSISDLKSGGVGGGNTNWKTLYEVKSENLGQGDKPDYFSSVATV 120
Query: 677 QVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW 736
R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF F YR+IL V I D+ + W
Sbjct: 121 VYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQW 180
Query: 737 VTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYN 785
VT FQ AE+ILG A +GE + + + A F +IFR+R K+E YN
Sbjct: 181 VTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETYN 234
>gi|119188411|ref|XP_001244812.1| replication factor-A protein 1 [Coccidioides immitis RS]
Length = 605
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 123/335 (36%), Positives = 199/335 (59%), Gaps = 22/335 (6%)
Query: 330 NINSFA--MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKP 387
+I++F MLA+ LND++ +G L VQ+K + + V + +LI+L+L++++
Sbjct: 50 DISNFVQTMLASSLNDLVNNGALRRGCFVQLKSFQANFVK-----GKRILIVLDLDVLED 104
Query: 388 GTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGV--HNNVAIPRQASAPVVQT--- 442
E +IG+P+PL T + TP A +++G GV ++VA P++ V T
Sbjct: 105 LGECE-RIGDPKPLETKVAEVE-KPTPTAISSDGFYGVVSEHSVAQPQRHQRATVPTMAP 162
Query: 443 -----HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFN 497
+PI +LSPY +KWTIKAR TNK+ I++W N G G+LFS++LLD+SGEIRAT F
Sbjct: 163 THANIYPIEALSPYSHKWTIKARCTNKSAIKKWYNRNGEGRLFSVNLLDDSGEIRATAFK 222
Query: 498 DECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
++C+ + + E+ VYYIS+ C ++ A ++FS++NNDYE++F T + + E ++P
Sbjct: 223 EQCDLLYPLFEEGSVYYISSPCRVQMAKREFSNVNNDYELTFERDTVIERAEDHE--DVP 280
Query: 557 SVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
+++ F + + + IDVLGV ++ V K+ K Y KR++ LVD + SV
Sbjct: 281 QMRFNFTSIGHLHSVEKGTTIDVLGVLKTVEPVAEVPSKSTGKRYTKRELMLVDDTGYSV 340
Query: 617 TMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL 651
+T+WG A +FD V+A K +VS+F G L
Sbjct: 341 PLTIWGGMATSFDVMPDSVVAFKGVKVSDFGGRSL 375
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 167/322 (51%), Gaps = 11/322 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A ++FS++NNDYE++F T + + E ++P +++ F + + + IDVLGV
Sbjct: 249 AKREFSNVNNDYELTFERDTVIERAEDHE--DVPQMRFNFTSIGHLHSVEKGTTIDVLGV 306
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
++ V K+ K Y KR++ LVD + SV +T+WG A +FD V+A K +
Sbjct: 307 LKTVEPVAEVPSKSTGKRYTKRELMLVDDTGYSVPLTIWGGMATSFDVMPDSVVAFKGVK 366
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTN-TRF--EPVSQRTGGMGGGAA 182
VS+F GG++LSL S ++ +PDI E HKL+GW+ Q +F +S+ G
Sbjct: 367 VSDF-GGRSLSLLNSGTITSDPDIEEAHKLKGWYDAQGKFDQFATHALSENAAISTGTRQ 425
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
+ E++D QLGM +K DY S+R + + Y AC + CNKKV+ + +
Sbjct: 426 DIYKAIVEVRDNQLGMTEKPDYFSLRATVVFIKQDTICYPACVQERCNKKVVQVDPEQWL 485
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPALK 301
CE C K YR IL + D T +W+ F +I+G+ A + E E D A
Sbjct: 486 CEHCEKSSLRPEYRYILSANVSDHTGQLWLNCFDEVGRAIMGMPANVLMELKESDDKAAS 545
Query: 302 KALF----TQYIFRLRAKLEHY 319
+A+ + + +AKL+++
Sbjct: 546 EAILHATCQMWNLKCKAKLDNF 567
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 5/135 (3%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 714
E++D QLGM +K DY S+R + + Y AC + CNKKV+ + + CE C K
Sbjct: 433 EVRDNQLGMTEKPDYFSLRATVVFIKQDTICYPACVQERCNKKVVQVDPEQWLCEHCEKS 492
Query: 715 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPALKKALF--- 770
YR IL + D T +W+ F +I+G+ A + E E D A +A+
Sbjct: 493 SLRPEYRYILSANVSDHTGQLWLNCFDEVGRAIMGMPANVLMELKESDDKAASEAILHAT 552
Query: 771 -TQYIFRLRAKLEHY 784
+ + +AKL+++
Sbjct: 553 CQMWNLKCKAKLDNF 567
>gi|302774432|ref|XP_002970633.1| hypothetical protein SELMODRAFT_441216 [Selaginella moellendorffii]
gi|300162149|gb|EFJ28763.1| hypothetical protein SELMODRAFT_441216 [Selaginella moellendorffii]
Length = 815
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 130/413 (31%), Positives = 209/413 (50%), Gaps = 76/413 (18%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNR 502
PI +L+PY +WTIKAR+T+K+ +R +NNARG G++FS DLLD E GEIR T FN+ +
Sbjct: 277 PIAALNPYHGRWTIKARITSKSDLRRFNNARGDGRVFSFDLLDAEGGEIRVTCFNNVADE 336
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F++ + ++Y +S +L+ A K+F+ + ND+E+ F + + PC ED ++P + F
Sbjct: 337 FYERAQVGRLYMVSKGSLRAAQKQFNHLKNDWEIMFEKDSVLDPCPEDS--SVPQQVFDF 394
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
+ I + + +D +GV + + +++ K +T +R + L D+S SV +T+WG
Sbjct: 395 KQVSEIENLPNNAMVDAIGVVVGVNQTTTIMRKNGTET-QRRTLQLRDRSGKSVEITMWG 453
Query: 623 ----KEA----ETFDASNKPVIAVKAARVSEFQGNLL----------------------- 651
+E E D+ P++A+KA RVS+F G L
Sbjct: 454 NFCTQEGQHLQELCDSGQSPILAIKAGRVSDFSGKSLGTISSTRFQINPDHPEARSLQLW 513
Query: 652 ------------LMRE----------------IQDQQLGMGDKADYCSVRGIIQVFRGSN 683
+ RE I+D+ LG +K D+ ++R I + +
Sbjct: 514 FEREGRHAQAQSISREGAGGGGRTENRKTVSQIKDEGLGRSEKPDFVTIRATIHFIKTDS 573
Query: 684 TTYKACPSQ----DCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTL 739
Y ACP Q C+KKV + +G +RCE+C++ YR +L + + D T + W+T
Sbjct: 574 FCYTACPLQIGDRQCSKKVTNNGDGTWRCERCDRTVPECDYRYMLSIQVMDHTGATWLTG 633
Query: 740 FQNEAESILGVTA-------QEVGESTEDHPALKKALFTQYIFRLRAKLEHYN 785
FQ AE +LGV A QE DH + FTQ+ F++R K E +N
Sbjct: 634 FQEAAEELLGVKAKDLFMWKQEDNGRFLDH--IASIQFTQHHFKVRIKEESFN 684
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/339 (31%), Positives = 174/339 (51%), Gaps = 25/339 (7%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+F+ + ND+E+ F + + PC ED ++P + F + I + + +D +GV
Sbjct: 357 AQKQFNHLKNDWEIMFEKDSVLDPCPEDS--SVPQQVFDFKQVSEIENLPNNAMVDAIGV 414
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEA----ETFDASNKP 117
+ + +++ K +T +R + L D+S SV +T+WG +E E D+ P
Sbjct: 415 VVGVNQTTTIMRKNGTET-QRRTLQLRDRSGKSVEITMWGNFCTQEGQHLQELCDSGQSP 473
Query: 118 VIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGM 177
++A+KA RVS+F G K+L S+ +NPD PE LQ WF + R G
Sbjct: 474 ILAIKAGRVSDFSG-KSLGTISSTRFQINPDHPEARSLQLWFEREGRHAQAQSISREGAG 532
Query: 178 GGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQ----DCNKKV 233
GGG N + +I+D+ LG +K D+ ++R I + + Y ACP Q C+KKV
Sbjct: 533 GGGRTENRKTVSQIKDEGLGRSEKPDFVTIRATIHFIKTDSFCYTACPLQIGDRQCSKKV 592
Query: 234 IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA------ 287
+ +G +RCE+C++ YR +L + + D T + W+T FQ AE +LGV A
Sbjct: 593 TNNGDGTWRCERCDRTVPECDYRYMLSIQVMDHTGATWLTGFQEAAEELLGVKAKDLFMW 652
Query: 288 -QEVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
QE DH + FTQ+ F++R K E +N +++
Sbjct: 653 KQEDNGRFLDH--IASIQFTQHHFKVRIKEESFNDEQRV 689
Score = 46.2 bits (108), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 13/127 (10%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG + AMLATQLN+++ +GTL + +IV+++ YI + V +R ++I+L L++
Sbjct: 47 LSDGTAVQQ-AMLATQLNEVVKNGTLMKSSIVKLQEYICNTVK-----DRKIVIVLNLDV 100
Query: 385 IKPGTEI-----GFKIGNPQPLNTNTDN--SSTQQTPAATNTNGSNGVHNNVAIPRQASA 437
+ E+ G + P P T + SS PA ++ G + RQA A
Sbjct: 101 LVSNAEMSDQPPGAVVDPPGPSGNQTASAVSSYGGRPAEVSSFGGRPTEVSSFGGRQAEA 160
Query: 438 PVVQTHP 444
P
Sbjct: 161 TSFGGRP 167
>gi|392871535|gb|EJB12180.1| replication factor-a protein 1 (rpa1), variant [Coccidioides
immitis RS]
Length = 572
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 123/335 (36%), Positives = 199/335 (59%), Gaps = 22/335 (6%)
Query: 330 NINSFA--MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKP 387
+I++F MLA+ LND++ +G L VQ+K + + V + +LI+L+L++++
Sbjct: 50 DISNFVQTMLASSLNDLVNNGALRRGCFVQLKSFQANFVK-----GKRILIVLDLDVLED 104
Query: 388 GTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGV--HNNVAIPRQASAPVVQT--- 442
E +IG+P+PL T + TP A +++G GV ++VA P++ V T
Sbjct: 105 LGECE-RIGDPKPLETKVAEVE-KPTPTAISSDGFYGVVSEHSVAQPQRHQRATVPTMAP 162
Query: 443 -----HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFN 497
+PI +LSPY +KWTIKAR TNK+ I++W N G G+LFS++LLD+SGEIRAT F
Sbjct: 163 THANIYPIEALSPYSHKWTIKARCTNKSAIKKWYNRNGEGRLFSVNLLDDSGEIRATAFK 222
Query: 498 DECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
++C+ + + E+ VYYIS+ C ++ A ++FS++NNDYE++F T + + E ++P
Sbjct: 223 EQCDLLYPLFEEGSVYYISSPCRVQMAKREFSNVNNDYELTFERDTVIERAEDHE--DVP 280
Query: 557 SVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
+++ F + + + IDVLGV ++ V K+ K Y KR++ LVD + SV
Sbjct: 281 QMRFNFTSIGHLHSVEKGTTIDVLGVLKTVEPVAEVPSKSTGKRYTKRELMLVDDTGYSV 340
Query: 617 TMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL 651
+T+WG A +FD V+A K +VS+F G L
Sbjct: 341 PLTIWGGMATSFDVMPDSVVAFKGVKVSDFGGRSL 375
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 167/322 (51%), Gaps = 11/322 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A ++FS++NNDYE++F T + + E ++P +++ F + + + IDVLGV
Sbjct: 249 AKREFSNVNNDYELTFERDTVIERAEDHE--DVPQMRFNFTSIGHLHSVEKGTTIDVLGV 306
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
++ V K+ K Y KR++ LVD + SV +T+WG A +FD V+A K +
Sbjct: 307 LKTVEPVAEVPSKSTGKRYTKRELMLVDDTGYSVPLTIWGGMATSFDVMPDSVVAFKGVK 366
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTN-TRF--EPVSQRTGGMGGGAA 182
VS+F GG++LSL S ++ +PDI E HKL+GW+ Q +F +S+ G
Sbjct: 367 VSDF-GGRSLSLLNSGTITSDPDIEEAHKLKGWYDAQGKFDQFATHALSENAAISTGTRQ 425
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
+ E++D QLGM +K DY S+R + + Y AC + CNKKV+ + +
Sbjct: 426 DIYKAIVEVRDNQLGMTEKPDYFSLRATVVFIKQDTICYPACVQERCNKKVVQVDPEQWL 485
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPALK 301
CE C K YR IL + D T +W+ F +I+G+ A + E E D A
Sbjct: 486 CEHCEKSSLRPEYRYILSANVSDHTGQLWLNCFDEVGRAIMGMPANVLMELKESDDKAAS 545
Query: 302 KALF----TQYIFRLRAKLEHY 319
+A+ + + +AKL+++
Sbjct: 546 EAILHATCQMWNLKCKAKLDNF 567
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 5/135 (3%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 714
E++D QLGM +K DY S+R + + Y AC + CNKKV+ + + CE C K
Sbjct: 433 EVRDNQLGMTEKPDYFSLRATVVFIKQDTICYPACVQERCNKKVVQVDPEQWLCEHCEKS 492
Query: 715 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPALKKALF--- 770
YR IL + D T +W+ F +I+G+ A + E E D A +A+
Sbjct: 493 SLRPEYRYILSANVSDHTGQLWLNCFDEVGRAIMGMPANVLMELKESDDKAASEAILHAT 552
Query: 771 -TQYIFRLRAKLEHY 784
+ + +AKL+++
Sbjct: 553 CQMWNLKCKAKLDNF 567
>gi|302687831|ref|XP_003033595.1| hypothetical protein SCHCODRAFT_53289 [Schizophyllum commune H4-8]
gi|300107290|gb|EFI98692.1| hypothetical protein SCHCODRAFT_53289, partial [Schizophyllum
commune H4-8]
Length = 432
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 126/400 (31%), Positives = 204/400 (51%), Gaps = 61/400 (15%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
I +++ Y + WTIKARV K+ IR W+N RGSG LF++ LD +GEIRAT FN +R +
Sbjct: 1 IATIALYNSNWTIKARVVTKSAIRTWSNNRGSGSLFNVTFLDSTGEIRATGFNQAVDRLY 60
Query: 505 DMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP 564
D+++ +V++++ ++ A +KFS++NNDYE+ +T++ PC +D ++P +K+ FV
Sbjct: 61 DVLQVGRVFFVTKARVELAKRKFSNVNNDYELHLEQNTSIEPCLDD--ADVPVIKFDFVK 118
Query: 565 LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE 624
+ + D + DV+GV +D +E+S + K+ + KR++T+ D S SV +TLWG+
Sbjct: 119 IDQLLTTEKDSSCDVIGVVVDCSEVSEIATKSTNRAAKKRELTIADDSGYSVRVTLWGET 178
Query: 625 AETFDASNKPVIAVKAARVSEFQGNLLLM---------------REIQD----------- 658
AE + + PVIA K +V +F G L M E++D
Sbjct: 179 AEKYSEAGYPVIAFKGVKVGDFGGRSLTMLTSSLMYVNLDHADTAELRDWFDNTGKHRDF 238
Query: 659 -----------QQLGMGDKADYC----------------SVRGIIQVFRGSNTTYKACPS 691
GD+ D SVR +I + Y AC S
Sbjct: 239 TAHTSSTSSSHYSFDHGDQRDLSQIRDATRGMSETTSNYSVRAMIMDIKAKPLAYPACRS 298
Query: 692 QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVT 751
C+KKV++ ++G + CEKCN ++ YR L ++IGD T ++ F + + ILG++
Sbjct: 299 PGCSKKVVEISDGRWLCEKCNTSHSSPDYRYTLHILIGDATGTMLFQAFDDVGKVILGMS 358
Query: 752 AQEVGESTEDH------PALKKALFTQYIFRLRAKLEHYN 785
A V E + AL +A + F R + E Y+
Sbjct: 359 ANAVIAMREANNYQGTDNALSRATKRTWNFVCRTRNEAYD 398
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/328 (31%), Positives = 175/328 (53%), Gaps = 11/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A +KFS++NNDYE+ +T++ PC +D ++P +K+ FV + + D + DV+GV
Sbjct: 79 AKRKFSNVNNDYELHLEQNTSIEPCLDD--ADVPVIKFDFVKIDQLLTTEKDSSCDVIGV 136
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+D +E+S + K+ + KR++T+ D S SV +TLWG+ AE + + PVIA K +
Sbjct: 137 VVDCSEVSEIATKSTNRAAKKRELTIADDSGYSVRVTLWGETAEKYSEAGYPVIAFKGVK 196
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGA--AG 183
V +F GG++L++ SS++ +N D + +L+ WF R + + G
Sbjct: 197 VGDF-GGRSLTMLTSSLMYVNLDHADTAELRDWFDNTGKHRDFTAHTSSTSSSHYSFDHG 255
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ + +I+D GM + SVR +I + Y AC S C+KKV++ ++G + C
Sbjct: 256 DQRDLSQIRDATRGMSETTSNYSVRAMIMDIKAKPLAYPACRSPGCSKKVVEISDGRWLC 315
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH------ 297
EKCN ++ YR L ++IGD T ++ F + + ILG++A V E +
Sbjct: 316 EKCNTSHSSPDYRYTLHILIGDATGTMLFQAFDDVGKVILGMSANAVIAMREANNYQGTD 375
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
AL +A + F R + E Y+G ++
Sbjct: 376 NALSRATKRTWNFVCRTRNEAYDGEPRL 403
>gi|400598555|gb|EJP66264.1| replication factor-a protein 1 [Beauveria bassiana ARSEF 2860]
Length = 597
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 118/336 (35%), Positives = 193/336 (57%), Gaps = 11/336 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ NDYE++F T VI ED+ N+P V++ F ++ + + D +D++GV
Sbjct: 245 AKKQFSNLPNDYELAFERDT-VIEKAEDQT-NVPQVRFNFSTIEELQSVEKDNTVDIIGV 302
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+A E+S + K Y KR++T+VD + SV +T+WGK A +FDA + VIA K +
Sbjct: 303 LKEAGEVSEIVSKKTGAPYQKRELTMVDDTGYSVRVTIWGKTASSFDAQPESVIAFKGTK 362
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGN- 184
VS+F GGK+LSL S +S++PDIP+ H+L+GW+ + Q +G A N
Sbjct: 363 VSDF-GGKSLSLLSSGTISVDPDIPDAHRLKGWYDSSGRNDTFATHQNLASVGAAAGRND 421
Query: 185 -LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ + +++++ LG+ D+A Y +++ I + N Y AC SQ CNKKV D +G +RC
Sbjct: 422 EIKTIAQVKEENLGVDDQA-YYTIKATIVFVKQDNFCYPACLSQGCNKKVQDMGDGTWRC 480
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
EKCN + YR +L + D T+ W++ F + +I+G++A E+ E E+ A A
Sbjct: 481 EKCNLSHDKPEYRYVLSFNVADHTSHQWLSCFDDSGRAIVGMSADELMELKENDEAKFLA 540
Query: 304 LF-----TQYIFRLRAKLEHYNGTKKIPDGVNINSF 334
F + FR RA++++Y +++ V SF
Sbjct: 541 AFEAVNCKKLQFRCRARMDNYGEVQRVRYQVMTASF 576
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 127/328 (38%), Positives = 197/328 (60%), Gaps = 27/328 (8%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLATQ N ++ + L I +IK+Y + + +++LIIL++ +I+ I KI
Sbjct: 63 MLATQANHVVHEDKLVRGCIARIKQYTPNNLKG-----KNILIILDIEVIE-NYGILDKI 116
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSN--GVHNNVA-IPRQA--SAPVVQT----HPIV 446
G P S+ + A T G++ GV P+Q+ S P + +PI
Sbjct: 117 GEP---------SAVESRAAETTIAGNDFYGVKKEEKPTPQQSMPSRPAMHAGNNIYPIE 167
Query: 447 SLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDM 506
LSP+ +KWTIKARVT+K+ I+ W+ A G GKLFS++LLDESGEI+AT FND+C+ F+++
Sbjct: 168 GLSPFSHKWTIKARVTSKSDIKTWHKATGEGKLFSVNLLDESGEIKATGFNDQCDAFYEL 227
Query: 507 IEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPL 565
+++ VYYIS C + A K+FS++ NDYE++F TVI ED+ N+P V++ F +
Sbjct: 228 LQEGSVYYISTPCRVNLAKKQFSNLPNDYELAFERD-TVIEKAEDQT-NVPQVRFNFSTI 285
Query: 566 KTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA 625
+ + + D +D++GV +A E+S + K Y KR++T+VD + SV +T+WGK A
Sbjct: 286 EELQSVEKDNTVDIIGVLKEAGEVSEIVSKKTGAPYQKRELTMVDDTGYSVRVTIWGKTA 345
Query: 626 ETFDASNKPVIAVKAARVSEFQGNLLLM 653
+FDA + VIA K +VS+F G L +
Sbjct: 346 SSFDAQPESVIAFKGTKVSDFGGKSLSL 373
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 78/137 (56%), Gaps = 6/137 (4%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 714
+++++ LG+ D+A Y +++ I + N Y AC SQ CNKKV D +G +RCEKCN
Sbjct: 428 QVKEENLGVDDQA-YYTIKATIVFVKQDNFCYPACLSQGCNKKVQDMGDGTWRCEKCNLS 486
Query: 715 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALF---- 770
+ YR +L + D T+ W++ F + +I+G++A E+ E E+ A A F
Sbjct: 487 HDKPEYRYVLSFNVADHTSHQWLSCFDDSGRAIVGMSADELMELKENDEAKFLAAFEAVN 546
Query: 771 -TQYIFRLRAKLEHYNK 786
+ FR RA++++Y +
Sbjct: 547 CKKLQFRCRARMDNYGE 563
>gi|242066720|ref|XP_002454649.1| hypothetical protein SORBIDRAFT_04g034780 [Sorghum bicolor]
gi|241934480|gb|EES07625.1| hypothetical protein SORBIDRAFT_04g034780 [Sorghum bicolor]
Length = 652
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 175/580 (30%), Positives = 266/580 (45%), Gaps = 128/580 (22%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DGV A+ A+QL D+ G + ++VQ+ YIV+ V G NR ++IL L +
Sbjct: 47 ISDGV-ATGHALFASQLCDLARSGVVRRGSVVQLLDYIVNDV--GPHRNRKAIVILNLEV 103
Query: 385 IKPGTEIGFKIGNPQ-PLNTNTDNS--STQQTPAATNTNGSNGVHNNVA----------- 430
+ EI IGNP P ++ NS + Q A N + + N VA
Sbjct: 104 LAAECEI---IGNPALPPDSGDSNSMRADQFNGALQNGSIAGTALNKVARPSDNAQVIQR 160
Query: 431 ---------IPR-----QASAPVVQTH-----------------------PIVSLSPYQN 453
+PR Q P VQ PI +L+PYQ
Sbjct: 161 SMAGNSLNMVPRPSENAQVFQPTVQPSYRPAPNYRNHGTIMKNDAPARIIPISALNPYQG 220
Query: 454 KWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKDKV 512
+W IK RVT K IR ++NA+G GK+FS DLLD + GEIRAT FN +RF++++E KV
Sbjct: 221 RWAIKGRVTAKGEIRRYHNAKGDGKVFSFDLLDSDGGEIRATCFNTLVDRFYEVVEVGKV 280
Query: 513 YYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEIS 572
Y +S LKPA K ++ +NN++E+ +T+ C DE ++P+ ++ F + I +
Sbjct: 281 YVVSRGNLKPAKKDYNHLNNEWEIFLEFQSTIELC-LDENSSIPAQRFSFSSIDKIEDSE 339
Query: 573 PDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG--------KE 624
+ +DV+GV + + S+ + N KR ITL D S SV +T+WG +
Sbjct: 340 NNAIVDVIGV-VTSVNPSTTIQRKNGMEAQKRTITLKDTSGRSVELTMWGDFCNREGLQL 398
Query: 625 AETFDASNKPVIAVKAARVSEFQG---------NLLL----------------------- 652
E + PV+AVKA +V+++ G LL+
Sbjct: 399 QEMVEYGVFPVLAVKAGKVNDYSGKSVGTISSSQLLINPDLAEAHSLRQWFDCGGRDAST 458
Query: 653 -------------------MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS-- 691
+ +I+D LGMGDK D+ +V+ + + Y ACP+
Sbjct: 459 QSISRDFTPSASRNEIRKTIAQIKDDGLGMGDKPDWVTVKATVTFIKTDPFCYTACPNVV 518
Query: 692 --QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILG 749
+ C KKV ++G + C+KCN+EF YR +L + I D T + T FQ + +LG
Sbjct: 519 GDRQCGKKVTKSDSGNWLCDKCNQEFPECDYRYLLQLNIQDHTGTTSATAFQEVGQELLG 578
Query: 750 VTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHY 784
+A+E+ E+ L L+ Y+ RL+ K E Y
Sbjct: 579 CSARELNMFKENEDPRYTAVLIHCLYQNYLLRLKVKEEQY 618
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/350 (30%), Positives = 177/350 (50%), Gaps = 36/350 (10%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K ++ +NN++E+ +T+ C DE ++P+ ++ F + I + + +DV+G
Sbjct: 290 PAKKDYNHLNNEWEIFLEFQSTIELC-LDENSSIPAQRFSFSSIDKIEDSENNAIVDVIG 348
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG--------KEAETFDASNK 116
V + + S+ + N KR ITL D S SV +T+WG + E +
Sbjct: 349 V-VTSVNPSTTIQRKNGMEAQKRTITLKDTSGRSVELTMWGDFCNREGLQLQEMVEYGVF 407
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-------STQTNTR-FE 168
PV+AVKA +V+++ G ++S S +L +NPD+ E H L+ WF STQ+ +R F
Sbjct: 408 PVLAVKAGKVNDYSGKSVGTISSSQLL-INPDLAEAHSLRQWFDCGGRDASTQSISRDFT 466
Query: 169 PVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS-- 226
P + R + +I+D LGMGDK D+ +V+ + + Y ACP+
Sbjct: 467 PSASRNEIRK--------TIAQIKDDGLGMGDKPDWVTVKATVTFIKTDPFCYTACPNVV 518
Query: 227 --QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILG 284
+ C KKV ++G + C+KCN+EF YR +L + I D T + T FQ + +LG
Sbjct: 519 GDRQCGKKVTKSDSGNWLCDKCNQEFPECDYRYLLQLNIQDHTGTTSATAFQEVGQELLG 578
Query: 285 VTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYNGTKKIPDGV 329
+A+E+ E+ L L+ Y+ RL+ K E Y +++ + V
Sbjct: 579 CSARELNMFKENEDPRYTAVLIHCLYQNYLLRLKVKEEQYGDERRVKNTV 628
>gi|226502879|ref|NP_001151792.1| DNA binding protein [Zea mays]
gi|195649707|gb|ACG44321.1| DNA binding protein [Zea mays]
gi|223945267|gb|ACN26717.1| unknown [Zea mays]
gi|413942327|gb|AFW74976.1| DNA binding protein [Zea mays]
Length = 876
Score = 218 bits (555), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 140/408 (34%), Positives = 208/408 (50%), Gaps = 68/408 (16%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDES-GEIRATMFNDECNR 502
P+ L+PY +KWTIK RVT KT +R +NNARG+GK+FS DLLDE GEIRAT FN + ++
Sbjct: 275 PLAQLNPYLDKWTIKVRVTAKTDLRFYNNARGAGKVFSFDLLDEQRGEIRATCFNTQADQ 334
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F ++IE DKVY IS +LKPA KKF+S+N++YE+S T++ C +D+ N+P +Y F
Sbjct: 335 FFNLIEVDKVYLISKGSLKPAQKKFNSLNHEYEISLDSRTSIEVCADDD-SNIPRQQYNF 393
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
+ I I D +D++G+ + K +T +R + L D S SV +TLWG
Sbjct: 394 RKISEIENIEKDAILDLIGIVTSVGPSVTFIRKDGVET-QRRTLELKDMSGRSVQLTLWG 452
Query: 623 K----EAETF----DASNKPVIAVKAARVSEFQGNLL-------------------LMR- 654
K E D+ PV+A+K ARV+++ G + L R
Sbjct: 453 KLCVAEGNQLQSLCDSGLNPVLALKGARVTDYSGRSVSSAGSTQLKIDPEIPEAESLRRW 512
Query: 655 ----------------------------EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTY 686
+I+D+ LG +K D+ +V+ I N Y
Sbjct: 513 YATGGKTAACVSLSVVSMGGTCVRKSIAQIKDENLGQLEKPDFITVKAAISHLIADNFCY 572
Query: 687 KACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQN 742
AC + CNKKV D +G +RC+KC++ YR +L I D + T F++
Sbjct: 573 PACTIDVNGRMCNKKVTDNGDGTWRCDKCDQSLPNCEYRYVLNGQIQDHSGVTNFTAFED 632
Query: 743 EAESILGVTAQEVGE-STEDHPA----LKKALFTQYIFRLRAKLEHYN 785
A+ ++G + E+ S ED L+ A + Q++F L+ K E YN
Sbjct: 633 AAKVMIGHSGHELNNISVEDSERFAEILQAARWQQFLFTLKVKEEIYN 680
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/338 (31%), Positives = 174/338 (51%), Gaps = 23/338 (6%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA KKF+S+N++YE+S T++ C +D+ N+P +Y F + I I D +D++G
Sbjct: 354 PAQKKFNSLNHEYEISLDSRTSIEVCADDD-SNIPRQQYNFRKISEIENIEKDAILDLIG 412
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK----EAETF----DASNK 116
+ + K +T +R + L D S SV +TLWGK E D+
Sbjct: 413 IVTSVGPSVTFIRKDGVET-QRRTLELKDMSGRSVQLTLWGKLCVAEGNQLQSLCDSGLN 471
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGG 176
PV+A+K ARV+++ G +++S + S+ L ++P+IPE L+ W++T T VS
Sbjct: 472 PVLALKGARVTDYSG-RSVSSAGSTQLKIDPEIPEAESLRRWYATGGKTA-ACVSLSVVS 529
Query: 177 MGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNKK 232
MGG + +I+D+ LG +K D+ +V+ I N Y AC + CNKK
Sbjct: 530 MGGTCVRKSIA--QIKDENLGQLEKPDFITVKAAISHLIADNFCYPACTIDVNGRMCNKK 587
Query: 233 VIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE 292
V D +G +RC+KC++ YR +L I D + T F++ A+ ++G + E+
Sbjct: 588 VTDNGDGTWRCDKCDQSLPNCEYRYVLNGQIQDHSGVTNFTAFEDAAKVMIGHSGHELNN 647
Query: 293 -STEDHPA----LKKALFTQYIFRLRAKLEHYNGTKKI 325
S ED L+ A + Q++F L+ K E YN ++
Sbjct: 648 ISVEDSERFAEILQAARWQQFLFTLKVKEEIYNDAPQV 685
>gi|225427514|ref|XP_002264009.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Vitis vinifera]
Length = 882
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 135/408 (33%), Positives = 208/408 (50%), Gaps = 72/408 (17%)
Query: 448 LSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNRFHDM 506
L+PYQ +WTIKARVT K +R +NN RG GK+FS DLLD + GEIR T FN ++F++
Sbjct: 276 LNPYQGRWTIKARVTAKGELRHYNNPRGDGKVFSFDLLDSDGGEIRVTCFNAVADQFYNQ 335
Query: 507 IEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLK 566
IE KVY IS +LKPA K F+ + ND+E+ ++T+ PC +D+ ++P ++ F +
Sbjct: 336 IETGKVYLISKGSLKPAQKTFNHLRNDHEIFLESTSTIQPCFDDD-NSIPRQQFHFRSIS 394
Query: 567 TIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK--- 623
+ + + +DV+GV + +S+ K +T KR + L D S SV +TLWG
Sbjct: 395 DVESMENNSVVDVIGVVSFISPSASIMRKNGTET-QKRALHLKDMSGRSVELTLWGNFCN 453
Query: 624 -EAETF----DASNKPVIAVKAARVSEFQGNLL--------------------------- 651
E + D+ PV+AVK+ARV++F G +
Sbjct: 454 AEGQRLQNMCDSGVFPVLAVKSARVNDFNGKAVGTISTSQLFIEPDFPEARKLKEWFDKE 513
Query: 652 -----------------------LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKA 688
+ +I+D++LG +K D+ +V + + N Y A
Sbjct: 514 GRNTPSVSISREVTSMGRTDVRKTISQIKDERLGTSEKPDWITVCATVSFIKVDNFCYTA 573
Query: 689 CP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEA 744
CP + CNKKV + +G +RCE+C++ + YR IL I D T WVT FQ
Sbjct: 574 CPIMIGDRQCNKKVTNNGDGKWRCERCDQSVDDCDYRYILQFQIQDHTGLTWVTAFQECG 633
Query: 745 ESILGVTAQEV----GESTEDHP---ALKKALFTQYIFRLRAKLEHYN 785
E I+G++A+ + E +D L+ LFT+Y F+L+ K E ++
Sbjct: 634 EEIMGISAKNLYYLKYEEQDDEKFGEILRGVLFTKYSFKLKVKEEIFS 681
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 107/341 (31%), Positives = 179/341 (52%), Gaps = 25/341 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K F+ + ND+E+ ++T+ PC +D+ ++P ++ F + + + + +DV+G
Sbjct: 351 PAQKTFNHLRNDHEIFLESTSTIQPCFDDD-NSIPRQQFHFRSISDVESMENNSVVDVIG 409
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK----EAETF----DASNK 116
V + +S+ K +T KR + L D S SV +TLWG E + D+
Sbjct: 410 VVSFISPSASIMRKNGTET-QKRALHLKDMSGRSVELTLWGNFCNAEGQRLQNMCDSGVF 468
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTG 175
PV+AVK+ARV++F G ++S S + + PD PE KL+ WF + NT +S+
Sbjct: 469 PVLAVKSARVNDFNGKAVGTISTSQLF-IEPDFPEARKLKEWFDKEGRNTPSVSISREVT 527
Query: 176 GMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNK 231
MG + +I+D++LG +K D+ +V + + N Y ACP + CNK
Sbjct: 528 SMG--RTDVRKTISQIKDERLGTSEKPDWITVCATVSFIKVDNFCYTACPIMIGDRQCNK 585
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV- 290
KV + +G +RCE+C++ + YR IL I D T WVT FQ E I+G++A+ +
Sbjct: 586 KVTNNGDGKWRCERCDQSVDDCDYRYILQFQIQDHTGLTWVTAFQECGEEIMGISAKNLY 645
Query: 291 ---GESTEDHP---ALKKALFTQYIFRLRAKLEHYNGTKKI 325
E +D L+ LFT+Y F+L+ K E ++ +++
Sbjct: 646 YLKYEEQDDEKFGEILRGVLFTKYSFKLKVKEEIFSDEQRV 686
>gi|147856620|emb|CAN82475.1| hypothetical protein VITISV_038295 [Vitis vinifera]
Length = 882
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 135/408 (33%), Positives = 208/408 (50%), Gaps = 72/408 (17%)
Query: 448 LSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNRFHDM 506
L+PYQ +WTIKARVT K +R +NN RG GK+FS DLLD + GEIR T FN ++F++
Sbjct: 276 LNPYQGRWTIKARVTAKGELRHYNNPRGDGKVFSFDLLDSDGGEIRVTCFNAVADQFYNQ 335
Query: 507 IEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLK 566
IE KVY IS +LKPA K F+ + ND+E+ ++T+ PC +D+ ++P ++ F +
Sbjct: 336 IETGKVYLISKGSLKPAQKTFNHLRNDHEIFLESTSTIQPCFDDD-NSIPRQQFHFRXIS 394
Query: 567 TIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK--- 623
+ + + +DV+GV + +S+ K +T KR + L D S SV +TLWG
Sbjct: 395 DVESMENNSVVDVIGVVSFISPSASIMRKNGTET-QKRALHLKDMSGRSVELTLWGNFCN 453
Query: 624 -EAETF----DASNKPVIAVKAARVSEFQGNLL--------------------------- 651
E + D+ PV+AVK+ARV++F G +
Sbjct: 454 AEGQRLQNMCDSGVFPVLAVKSARVNDFNGKAVGTISTSQLFIEPDFPEARKLKEWFDKE 513
Query: 652 -----------------------LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKA 688
+ +I+D++LG +K D+ +V + + N Y A
Sbjct: 514 GRNTPSVSISREVTXMGRTDVRKTISQIKDERLGTSEKPDWITVCATVSFIKVDNFCYTA 573
Query: 689 CP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEA 744
CP + CNKKV + +G +RCE+C++ + YR IL I D T WVT FQ
Sbjct: 574 CPIMIGDRQCNKKVTNNGDGKWRCERCDQSVDDCDYRYILQFQIQDHTGLTWVTAFQECG 633
Query: 745 ESILGVTAQEV----GESTEDHP---ALKKALFTQYIFRLRAKLEHYN 785
E I+G++A+ + E +D L+ LFT+Y F+L+ K E ++
Sbjct: 634 EEIMGISAKNLYYLKYEEQDDEKFGEILRGVLFTKYSFKLKVKEEIFS 681
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 107/341 (31%), Positives = 179/341 (52%), Gaps = 25/341 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K F+ + ND+E+ ++T+ PC +D+ ++P ++ F + + + + +DV+G
Sbjct: 351 PAQKTFNHLRNDHEIFLESTSTIQPCFDDD-NSIPRQQFHFRXISDVESMENNSVVDVIG 409
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK----EAETF----DASNK 116
V + +S+ K +T KR + L D S SV +TLWG E + D+
Sbjct: 410 VVSFISPSASIMRKNGTET-QKRALHLKDMSGRSVELTLWGNFCNAEGQRLQNMCDSGVF 468
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTG 175
PV+AVK+ARV++F G ++S S + + PD PE KL+ WF + NT +S+
Sbjct: 469 PVLAVKSARVNDFNGKAVGTISTSQLF-IEPDFPEARKLKEWFDKEGRNTPSVSISREVT 527
Query: 176 GMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNK 231
MG + +I+D++LG +K D+ +V + + N Y ACP + CNK
Sbjct: 528 XMG--RTDVRKTISQIKDERLGTSEKPDWITVCATVSFIKVDNFCYTACPIMIGDRQCNK 585
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV- 290
KV + +G +RCE+C++ + YR IL I D T WVT FQ E I+G++A+ +
Sbjct: 586 KVTNNGDGKWRCERCDQSVDDCDYRYILQFQIQDHTGLTWVTAFQECGEEIMGISAKNLY 645
Query: 291 ---GESTEDHP---ALKKALFTQYIFRLRAKLEHYNGTKKI 325
E +D L+ LFT+Y F+L+ K E ++ +++
Sbjct: 646 YLKYEEQDDEKFGEILRGVLFTKYSFKLKVKEEIFSDEQRV 686
>gi|320583428|gb|EFW97641.1| Subunit of heterotrimeric Replication Protein A (RPA) [Ogataea
parapolymorpha DL-1]
Length = 604
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/341 (34%), Positives = 191/341 (56%), Gaps = 25/341 (7%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A +FS++ + YE+ F T + PC++D ++P + + FVPL + + IDV+G+
Sbjct: 238 AKPQFSNLKHQYELQFDKDTIIEPCDDD--SDVPKLHFDFVPLDQVQNLENGAVIDVIGI 295
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ + + K+ K + +RDI LVD+SQ +V + LW K A FD V+A K R
Sbjct: 296 LKEVKDKQEIVAKSTGKPFDRRDIVLVDKSQFAVNIGLWNKHAREFDVPVGSVVAFKGCR 355
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGA--A 182
V +F GGK+LSL ++ + +NPDI E +K++GW+ Q ++ F+ ++ +G G + +
Sbjct: 356 VQDF-GGKSLSLIPAATIVVNPDIEEAYKIKGWYDAQGSHQSFKSIALESGSSGATSLTS 414
Query: 183 GNLLLMR----EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNN 238
+L R ++QD++LG+ DK DY S++ I + N Y AC S+ CNKK+++Q+N
Sbjct: 415 KQSILERKTIKQVQDEKLGLKDKPDYFSLKATISFIKTDNFCYPACRSEGCNKKLLEQDN 474
Query: 239 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED-- 296
G +RCEKCN YR IL V + D T +W+TLF +A +LG++A E+ + D
Sbjct: 475 GTWRCEKCNINHPEPNYRYILTVSVVDETGQMWLTLFDEQAAQLLGLSAAELLKLKNDAE 534
Query: 297 --------HPALKKAL-----FTQYIFRLRAKLEHYNGTKK 324
ALK + F + + R+R K++ Y G +
Sbjct: 535 DPSIESVGENALKNFINENISFKEVLLRVRGKVDSYQGQDR 575
Score = 198 bits (504), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 129/419 (30%), Positives = 206/419 (49%), Gaps = 83/419 (19%)
Query: 443 HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNR 502
+ I LSPYQN WTIKARV+ K+ ++ W+N RG GKLF+++LLDE+GEIRAT FN +
Sbjct: 158 YSIDQLSPYQNSWTIKARVSFKSDMKHWSNQRGDGKLFNVNLLDETGEIRATAFNQVAEK 217
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F D++E++KV+YIS +++ A +FS++ + YE+ F T + PC++D ++P + + F
Sbjct: 218 FWDLLEENKVFYISKASMQMAKPQFSNLKHQYELQFDKDTIIEPCDDD--SDVPKLHFDF 275
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
VPL + + IDV+G+ + + + K+ K + +RDI LVD+SQ +V + LW
Sbjct: 276 VPLDQVQNLENGAVIDVIGILKEVKDKQEIVAKSTGKPFDRRDIVLVDKSQFAVNIGLWN 335
Query: 623 KEAETFDASNKPVIAVKAARVSEFQGNLLLM---------REIQDQQLGMGDKADYCSVR 673
K A FD V+A K RV +F G L + +I++ G + +
Sbjct: 336 KHAREFDVPVGSVVAFKGCRVQDFGGKSLSLIPAATIVVNPDIEEAYKIKG----WYDAQ 391
Query: 674 GIIQVFRG-----------SNTTYKACPSQDCNKKVIDQNNGMY---------------- 706
G Q F+ S T+ ++ + K+V D+ G+
Sbjct: 392 GSHQSFKSIALESGSSGATSLTSKQSILERKTIKQVQDEKLGLKDKPDYFSLKATISFIK 451
Query: 707 ---------RCEKCNKEF-----NTF------------TYRLILPVMIGDWTNSVWVTLF 740
R E CNK+ T+ YR IL V + D T +W+TLF
Sbjct: 452 TDNFCYPACRSEGCNKKLLEQDNGTWRCEKCNINHPEPNYRYILTVSVVDETGQMWLTLF 511
Query: 741 QNEAESILGVTAQEVGESTED----------HPALKKAL-----FTQYIFRLRAKLEHY 784
+A +LG++A E+ + D ALK + F + + R+R K++ Y
Sbjct: 512 DEQAAQLLGLSAAELLKLKNDAEDPSIESVGENALKNFINENISFKEVLLRVRGKVDSY 570
>gi|346324124|gb|EGX93721.1| replication factor-A protein 1 [Cordyceps militaris CM01]
Length = 598
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/329 (37%), Positives = 194/329 (58%), Gaps = 28/329 (8%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLATQ N ++ D L I ++K+Y + + +++LIIL+L +I+ I KI
Sbjct: 63 MLATQANHVVHDEKLVRGCIARVKQYTPNNLKG-----KNILIILDLEVIE-SYGILDKI 116
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSN--GVHNN-VAIPRQASAPVV-------QTHPI 445
G P S+ + A T G++ GV P+Q + P +PI
Sbjct: 117 GEP---------SAVESKAAETTIAGNDFYGVKKEEKPTPQQQTMPSRPAMHAGNNIYPI 167
Query: 446 VSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHD 505
LSP+ +KWTIKARVT+K+ I+ W+ A G GKLFS++LLDESGEI+ T FND+C+ F++
Sbjct: 168 EGLSPFSHKWTIKARVTSKSEIKTWHKATGEGKLFSVNLLDESGEIKCTGFNDQCDAFYE 227
Query: 506 MIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP 564
++++ VYYIS C + A K+FS++ NDYE++F TVI ED+ N+P V++ F
Sbjct: 228 LLQEGSVYYISTPCRVNLAKKQFSNLPNDYELAFERD-TVIEKAEDQT-NVPQVRFNFST 285
Query: 565 LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE 624
++ + + D +D++GV +A E+S + K Y KR++T+VD + SV +T+WGK
Sbjct: 286 IQELQSVEKDNTVDIIGVLKEAGEISEIVSKKTGAPYQKRELTMVDDTGYSVRVTIWGKT 345
Query: 625 AETFDASNKPVIAVKAARVSEFQGNLLLM 653
A +FDA + V+A K +VS+F G L +
Sbjct: 346 ASSFDAQPESVVAFKGTKVSDFGGKSLSL 374
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 114/336 (33%), Positives = 191/336 (56%), Gaps = 11/336 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ NDYE++F T VI ED+ N+P V++ F ++ + + D +D++GV
Sbjct: 246 AKKQFSNLPNDYELAFERDT-VIEKAEDQT-NVPQVRFNFSTIQELQSVEKDNTVDIIGV 303
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+A E+S + K Y KR++T+VD + SV +T+WGK A +FDA + V+A K +
Sbjct: 304 LKEAGEISEIVSKKTGAPYQKRELTMVDDTGYSVRVTIWGKTASSFDAQPESVVAFKGTK 363
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAA--G 183
VS+F GGK+LSL S +S++PDIP+ H+L+GW+ + Q +G A
Sbjct: 364 VSDF-GGKSLSLLSSGTISVDPDIPDAHRLKGWYDSAGRNDNFTTHQNLASVGAAAGRTD 422
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ + +++++ LG+ D+A Y +++ I + N Y AC SQ CNKKV D +G +RC
Sbjct: 423 EIKTIAQVKEENLGVDDQA-YYTIKATIVFVKQDNFCYPACLSQGCNKKVQDMGDGTWRC 481
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
EKCN + YR ++ + D T+ W++ F +I+G++A E+ + E+ A A
Sbjct: 482 EKCNLSHDKPEYRYVMNFNVADHTSHQWLSCFDESGRAIVGMSADELMDLKENDEAKFMA 541
Query: 304 LF-----TQYIFRLRAKLEHYNGTKKIPDGVNINSF 334
F + FR RA++++Y +++ V SF
Sbjct: 542 TFEAVNCKKLQFRCRARMDNYGEVQRVRYQVMTASF 577
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 10/160 (6%)
Query: 632 NKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS 691
N + A R E + + +++++ LG+ D+A Y +++ I + N Y AC S
Sbjct: 410 NLASVGAAAGRTDEIK----TIAQVKEENLGVDDQA-YYTIKATIVFVKQDNFCYPACLS 464
Query: 692 QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVT 751
Q CNKKV D +G +RCEKCN + YR ++ + D T+ W++ F +I+G++
Sbjct: 465 QGCNKKVQDMGDGTWRCEKCNLSHDKPEYRYVMNFNVADHTSHQWLSCFDESGRAIVGMS 524
Query: 752 AQEVGESTEDHPALKKALF-----TQYIFRLRAKLEHYNK 786
A E+ + E+ A A F + FR RA++++Y +
Sbjct: 525 ADELMDLKENDEAKFMATFEAVNCKKLQFRCRARMDNYGE 564
>gi|320037894|gb|EFW19830.1| replication factor-A protein 1 [Coccidioides posadasii str.
Silveira]
Length = 605
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 196/327 (59%), Gaps = 20/327 (6%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLA+ LN+++ +G L VQ+K + + V + +LI+L+L++++ E +I
Sbjct: 58 MLASSLNNLVNNGALRRGCFVQLKSFQANFVK-----GKRILIVLDLDVLEDLGECE-RI 111
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGV--HNNVAIPRQ---ASAPVVQ-TH----PI 445
G+P+PL T + TP A +++G GV ++ A P++ AS P + TH PI
Sbjct: 112 GDPKPLETKVAEVE-KPTPTAISSDGFYGVVSEHSAAQPQRHQRASVPTMAPTHANIYPI 170
Query: 446 VSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHD 505
+LSPY +KWTIKAR TNK+ I++W N G G+LFS++LLD+SGEIRAT F ++C+ +
Sbjct: 171 EALSPYSHKWTIKARCTNKSAIKKWYNRNGEGRLFSVNLLDDSGEIRATAFKEQCDLLYP 230
Query: 506 MIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP 564
+ E+ VYYIS+ C ++ A ++FS++NNDYE++F T + + E ++P +++ F
Sbjct: 231 LFEEGSVYYISSPCRVQMAKREFSNVNNDYELTFERDTVIEKAEDHE--DVPQMRFNFTS 288
Query: 565 LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE 624
+ + + IDVLGV ++ V K+ K Y KR++ LVD + SV +T+WG
Sbjct: 289 IGHLHSVEKGTTIDVLGVLKTVEPVAEVPSKSTGKRYTKRELMLVDDTGYSVPLTIWGAM 348
Query: 625 AETFDASNKPVIAVKAARVSEFQGNLL 651
A +FD V+A K +VS+F G L
Sbjct: 349 ATSFDVMPDSVVAFKGVKVSDFGGRSL 375
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 168/322 (52%), Gaps = 11/322 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A ++FS++NNDYE++F T + + E ++P +++ F + + + IDVLGV
Sbjct: 249 AKREFSNVNNDYELTFERDTVIEKAEDHE--DVPQMRFNFTSIGHLHSVEKGTTIDVLGV 306
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
++ V K+ K Y KR++ LVD + SV +T+WG A +FD V+A K +
Sbjct: 307 LKTVEPVAEVPSKSTGKRYTKRELMLVDDTGYSVPLTIWGAMATSFDVMPDSVVAFKGVK 366
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTN-TRF--EPVSQRTGGMGGGAA 182
VS+F GG++LSL S ++ +PDI E HKL+GW+ Q +F +S+ G
Sbjct: 367 VSDF-GGRSLSLLNSGTITSDPDIEEAHKLKGWYDAQGKFDQFATHALSENAAISTGTRQ 425
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
+ E++D QLGM +K DY S+R + + Y AC + CNKKV+ ++ +
Sbjct: 426 DIYKAIVEVRDNQLGMTEKPDYFSLRATVVFIKQDTICYPACVQERCNKKVVQVDSEQWL 485
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPALK 301
CE C K YR IL + D T +W+ F +I+G+ A + E E D A
Sbjct: 486 CEHCEKSSLRPEYRYILSANVSDHTGQLWLNCFDEVGRAIMGMPANVLMELKESDDKAAS 545
Query: 302 KALF----TQYIFRLRAKLEHY 319
+A+ + + +AKL+++
Sbjct: 546 EAILHATCQMWNLKCKAKLDNF 567
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 5/135 (3%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 714
E++D QLGM +K DY S+R + + Y AC + CNKKV+ ++ + CE C K
Sbjct: 433 EVRDNQLGMTEKPDYFSLRATVVFIKQDTICYPACVQERCNKKVVQVDSEQWLCEHCEKS 492
Query: 715 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPALKKALF--- 770
YR IL + D T +W+ F +I+G+ A + E E D A +A+
Sbjct: 493 SLRPEYRYILSANVSDHTGQLWLNCFDEVGRAIMGMPANVLMELKESDDKAASEAILHAT 552
Query: 771 -TQYIFRLRAKLEHY 784
+ + +AKL+++
Sbjct: 553 CQMWNLKCKAKLDNF 567
>gi|303316318|ref|XP_003068161.1| replication factor-A protein 1 family protein [Coccidioides
posadasii C735 delta SOWgp]
gi|240107842|gb|EER26016.1| replication factor-A protein 1 family protein [Coccidioides
posadasii C735 delta SOWgp]
Length = 605
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 196/327 (59%), Gaps = 20/327 (6%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLA+ LN+++ +G L VQ+K + + V + +LI+L+L++++ E +I
Sbjct: 58 MLASSLNNLVNNGALRRGCFVQLKSFQANFVK-----GKRILIVLDLDVLEDLGECE-RI 111
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGV--HNNVAIPRQ---ASAPVVQ-TH----PI 445
G+P+PL T + TP A +++G GV ++ A P++ AS P + TH PI
Sbjct: 112 GDPKPLETKVAEVE-KPTPTAISSDGFYGVVSEHSAAQPQRHQRASVPTMAPTHANIYPI 170
Query: 446 VSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHD 505
+LSPY +KWTIKAR TNK+ I++W N G G+LFS++LLD+SGEIRAT F ++C+ +
Sbjct: 171 EALSPYSHKWTIKARCTNKSAIKKWYNRNGEGRLFSVNLLDDSGEIRATAFKEQCDLLYP 230
Query: 506 MIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP 564
+ E+ VYYIS+ C ++ A ++FS++NNDYE++F T + + E ++P +++ F
Sbjct: 231 LFEEGSVYYISSPCRVQMAKREFSNVNNDYELTFERDTVIEKAEDHE--DVPQMRFNFTS 288
Query: 565 LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE 624
+ + + IDVLGV ++ V K+ K Y KR++ LVD + SV +T+WG
Sbjct: 289 IGHLHSVEKGTTIDVLGVLKTVEPVAEVPSKSTGKRYTKRELMLVDDTGYSVPLTIWGAM 348
Query: 625 AETFDASNKPVIAVKAARVSEFQGNLL 651
A +FD V+A K +VS+F G L
Sbjct: 349 ATSFDVMPDSVVAFKGVKVSDFGGRSL 375
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 168/322 (52%), Gaps = 11/322 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A ++FS++NNDYE++F T + + E ++P +++ F + + + IDVLGV
Sbjct: 249 AKREFSNVNNDYELTFERDTVIEKAEDHE--DVPQMRFNFTSIGHLHSVEKGTTIDVLGV 306
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
++ V K+ K Y KR++ LVD + SV +T+WG A +FD V+A K +
Sbjct: 307 LKTVEPVAEVPSKSTGKRYTKRELMLVDDTGYSVPLTIWGAMATSFDVMPDSVVAFKGVK 366
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTN-TRF--EPVSQRTGGMGGGAA 182
VS+F GG++LSL S ++ +PDI E HKL+GW+ Q +F +S+ G
Sbjct: 367 VSDF-GGRSLSLLNSGTITSDPDIEEAHKLKGWYDAQGKFDQFATHALSENAAISTGTRQ 425
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
+ E++D QLGM +K DY S+R + + Y AC + CNKKV+ ++ +
Sbjct: 426 DIYKAIVEVRDNQLGMTEKPDYFSLRATVVFIKQDTICYPACVQERCNKKVVQVDSEQWL 485
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPALK 301
CE C K YR IL + D T +W+ F +I+G+ A + E E D A
Sbjct: 486 CEHCEKSSLRPEYRYILSANVSDHTGQLWLNCFDEVGRAIMGMPANVLMELKESDDKAAS 545
Query: 302 KALF----TQYIFRLRAKLEHY 319
+A+ + + +AKL+++
Sbjct: 546 EAILHATCQMWNLKCKAKLDNF 567
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 5/135 (3%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 714
E++D QLGM +K DY S+R + + Y AC + CNKKV+ ++ + CE C K
Sbjct: 433 EVRDNQLGMTEKPDYFSLRATVVFIKQDTICYPACVQERCNKKVVQVDSEQWLCEHCEKS 492
Query: 715 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPALKKALF--- 770
YR IL + D T +W+ F +I+G+ A + E E D A +A+
Sbjct: 493 SLRPEYRYILSANVSDHTGQLWLNCFDEVGRAIMGMPANVLMELKESDDKAASEAILHAT 552
Query: 771 -TQYIFRLRAKLEHY 784
+ + +AKL+++
Sbjct: 553 CQMWNLKCKAKLDNF 567
>gi|313234321|emb|CBY10388.1| unnamed protein product [Oikopleura dioica]
Length = 589
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 152/511 (29%), Positives = 247/511 (48%), Gaps = 76/511 (14%)
Query: 339 TQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKIGNP 398
+Q++ I+TD L + +++IK + ++G S + + + P T G++ G+
Sbjct: 53 SQMSVIVTDKNLEKGDLLKIKHWNITGNSDKMLFQVEDFEVEKKSFPVPKTLKGWRYGDA 112
Query: 399 --QPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWT 456
+P + + P AT + G N A P+ A + +++L+PY NKW
Sbjct: 113 FEKPAKSVSAPKKKVAVPGATGV--ARGKEN--AKPQTADGRYMS---VMTLTPYMNKWC 165
Query: 457 IKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYIS 516
IKARV K P++E+ NA+G+GKLF+ + D + ++ + FNDE ++F +++EK KV IS
Sbjct: 166 IKARVVQKGPLKEYQNAKGAGKLFAFTVDDGTCNLKISAFNDEVDKFFNIVEKGKVVTIS 225
Query: 517 NCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPL-KTIAEISPDE 575
N LKP N +++S N+DYE + TT+ D+ ++P + + F P+ K I++ +
Sbjct: 226 NGQLKPKNAQYNSTNHDYECTLGRMTTIEEVM-DDCDDIPQMTFNFEPISKIISDRAKGA 284
Query: 576 NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS-QASVTMTLWGKEAETFDASNKP 634
+DV V + + ++ + K KRD+ +VD S + + TLWG++A F AS
Sbjct: 285 FVDVCAVINEVGAIDTINTRAG-KQLEKRDLEIVDDSTKEKMRCTLWGQQAVDFSASRGQ 343
Query: 635 VIAVKAARVSEFQGN----------LLLMREIQDQQLGM--------------------- 663
V+AVKAA V EFQG +L E Q+L +
Sbjct: 344 VMAVKAASVGEFQGKTLSVGRDSEIILDFAEDHGQKLNVWWTQEGQDAAFEGQSGAGSSG 403
Query: 664 --------------------GDKADYCSVRGIIQVFRGSNTTYKACPSQD---CNKKVID 700
DK + + + + + YK CP +D CNKK+I+
Sbjct: 404 GKRNEMVLLDSIMQGANYQTDDKPYWFNSKCYLTYIKKERMMYKGCPGKDDQKCNKKLIE 463
Query: 701 QNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE--- 757
+++GMYRCEKCN+ F F YR+++ + D + T F AE ILG A E+GE
Sbjct: 464 EDDGMYRCEKCNQNFQNFNYRIMMQAAVTDGRGQQYCTFFGETAEQILGKPADELGEMFN 523
Query: 758 ----STEDHPALKKALFTQYIFRLRAKLEHY 784
+D K L ++I RAK E Y
Sbjct: 524 SDGNEFDDFINTKSCL--EFILGGRAKCEIY 552
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 113/363 (31%), Positives = 181/363 (49%), Gaps = 32/363 (8%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPL-KTIAEISPDENIDVL 63
P N +++S N+DYE + TT+ +D ++P + + F P+ K I++ + +DV
Sbjct: 231 PKNAQYNSTNHDYECTLGRMTTIEEVMDD-CDDIPQMTFNFEPISKIISDRAKGAFVDVC 289
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQS-QASVTMTLWGKEAETFDASNKPVIAVK 122
V + + ++ + K KRD+ +VD S + + TLWG++A F AS V+AVK
Sbjct: 290 AVINEVGAIDTINTRAG-KQLEKRDLEIVDDSTKEKMRCTLWGQQAVDFSASRGQVMAVK 348
Query: 123 AARVSEFQGGKTLSLSMSSVLSLNPDIPECH--KLQGWFSTQ-TNTRFEPVSQRTGGMGG 179
AA V EFQG KTLS+ S + L D E H KL W++ + + FE S G
Sbjct: 349 AASVGEFQG-KTLSVGRDSEIIL--DFAEDHGQKLNVWWTQEGQDAAFEGQSGAGSSGG- 404
Query: 180 GAAGNLLLMREI-QDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD---CNKKVID 235
++L+ I Q DK + + + + + YK CP +D CNKK+I+
Sbjct: 405 -KRNEMVLLDSIMQGANYQTDDKPYWFNSKCYLTYIKKERMMYKGCPGKDDQKCNKKLIE 463
Query: 236 QNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE--- 292
+++GMYRCEKCN+ F F YR+++ + D + T F AE ILG A E+GE
Sbjct: 464 EDDGMYRCEKCNQNFQNFNYRIMMQAAVTDGRGQQYCTFFGETAEQILGKPADELGEMFN 523
Query: 293 ----STEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDG------VNINSFAM-LATQL 341
+D K L ++I RAK E Y +++ ++ N + + LA++L
Sbjct: 524 SDGNEFDDFINTKSCL--EFILGGRAKCEIYQDEQRLKVAAQRVAQIDFNKYGLDLASRL 581
Query: 342 NDI 344
+
Sbjct: 582 QEF 584
>gi|242061678|ref|XP_002452128.1| hypothetical protein SORBIDRAFT_04g020190 [Sorghum bicolor]
gi|241931959|gb|EES05104.1| hypothetical protein SORBIDRAFT_04g020190 [Sorghum bicolor]
Length = 831
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 144/424 (33%), Positives = 214/424 (50%), Gaps = 78/424 (18%)
Query: 435 ASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRA 493
AS P I SL YQ +WTIKARVT KT ++ WNNA+G+GKLFS DL+D E G+IRA
Sbjct: 274 ASEPASHVVAISSLKVYQTRWTIKARVTAKTGVKHWNNAKGTGKLFSFDLIDGEGGQIRA 333
Query: 494 TMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSF-THSTTVIPCNEDEV 552
F + ++F+D+IE DKVY IS+ +KP+ K+F+ +NND E++ T +++V C+ D+
Sbjct: 334 VCFKEAVDKFYDLIEVDKVYLISSGAVKPSQKRFNPLNNDLEITLDTLTSSVEICSSDDF 393
Query: 553 GNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS 612
N+P V+Y F + I + +D+LGV +T K +T KR + L D S
Sbjct: 394 -NIPKVQYSFQQISEIENMDNHSAVDLLGVVTSVGPSVMMTRKDGTQT-QKRTLQLRDMS 451
Query: 613 QASVTMTLWGK----EAETFD----ASNKPVIAVKAARVSEFQGN--------------- 649
SV +T WG E + +S P++A+ AR+S+F G
Sbjct: 452 GRSVGVTFWGDFCDVEGQQLQLQCHSSFNPILALIGARISDFSGRSVSTIGSTQLKINPD 511
Query: 650 --------------------LLLMRE---------------IQDQQLGMGDKADYCSVRG 674
L L RE I+D+ LG +K D+ +V+
Sbjct: 512 FPDAERLRQWYVTEGMTTACLSLSREQFNSVQADVRKTIAQIKDETLGR-NKTDWITVKA 570
Query: 675 IIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGD 730
I + + Y ACP + CNKKVID +G++ CE+C+K + YR ++ I D
Sbjct: 571 AISHVQTESFCYPACPLIFNEKPCNKKVIDSGDGIWFCERCDKSSGSCEYRYMVKFRIQD 630
Query: 731 WTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYI---------FRLRAKL 781
T+++ T FQ + I G TAQE+ T + +ALFT+ I F+L+ +
Sbjct: 631 HTSTIIATAFQEAGKQIFGRTAQEL--RTIRNVNHDEALFTEIIEGARWHLNLFKLKVRE 688
Query: 782 EHYN 785
E YN
Sbjct: 689 ESYN 692
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 106/343 (30%), Positives = 177/343 (51%), Gaps = 29/343 (8%)
Query: 5 PANKKFSSINNDYEMSF-THSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVL 63
P+ K+F+ +NND E++ T +++V C+ D+ N+P V+Y F + I + +D+L
Sbjct: 362 PSQKRFNPLNNDLEITLDTLTSSVEICSSDDF-NIPKVQYSFQQISEIENMDNHSAVDLL 420
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK----EAETFD----ASN 115
GV +T K +T KR + L D S SV +T WG E + +S
Sbjct: 421 GVVTSVGPSVMMTRKDGTQT-QKRTLQLRDMSGRSVGVTFWGDFCDVEGQQLQLQCHSSF 479
Query: 116 KPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTG 175
P++A+ AR+S+F G +++S S+ L +NPD P+ +L+ W+ T+ T +S
Sbjct: 480 NPILALIGARISDFSG-RSVSTIGSTQLKINPDFPDAERLRQWYVTEGMTT-ACLSLSRE 537
Query: 176 GMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNK 231
A + +I+D+ LG +K D+ +V+ I + + Y ACP + CNK
Sbjct: 538 QFNSVQADVRKTIAQIKDETLGR-NKTDWITVKAAISHVQTESFCYPACPLIFNEKPCNK 596
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG 291
KVID +G++ CE+C+K + YR ++ I D T+++ T FQ + I G TAQE+
Sbjct: 597 KVIDSGDGIWFCERCDKSSGSCEYRYMVKFRIQDHTSTIIATAFQEAGKQIFGRTAQEL- 655
Query: 292 ESTEDHPALKKALFTQYI---------FRLRAKLEHYNGTKKI 325
T + +ALFT+ I F+L+ + E YN ++I
Sbjct: 656 -RTIRNVNHDEALFTEIIEGARWHLNLFKLKVREESYNDEQRI 697
>gi|361128289|gb|EHL00233.1| putative Replication factor A protein 1 [Glarea lozoyensis 74030]
Length = 365
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 122/325 (37%), Positives = 189/325 (58%), Gaps = 9/325 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS+INNDYE++F T V C ED+ ++P V+Y F + + E+ D IDV+GV
Sbjct: 16 AKKQFSNINNDYELAFDKDTIVEKC-EDQ-NDVPQVRYNFTNIGALQEVEKDSTIDVIGV 73
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ +++ + KT Q+ Y KRD+TLVD S SV MT+WGK A FDA+ + ++A K A+
Sbjct: 74 LKEVNDVNQIVSKTTQQPYDKRDLTLVDDSGYSVKMTIWGKTATKFDANPEQIVAFKGAK 133
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
VS+F GK+LSL S +S++PDI E +KL+GW+ + + T G GG L
Sbjct: 134 VSDF-NGKSLSLLSSGSMSIDPDIAEAYKLKGWYDSNGRSETFAAHTSTAGAAGGRNNEL 192
Query: 186 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 245
+ +++D+ LGM DK DY +V+ I + +Y AC S++CNKKVI ++NG + C
Sbjct: 193 KTVAQVKDENLGMNDKDDYFAVKATIVYIKQDPISYPACASENCNKKVI-EDNGYWTCAS 251
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPALKKAL 304
CN +R I+ V + D T S +++ F + I+G+ ++ E E D+ A+ KA
Sbjct: 252 CNINHPKPQHRFIMTVNVSDHTGSFYLSCFDDVGRLIMGMNGDQLMELKETDNEAVNKAF 311
Query: 305 ----FTQYIFRLRAKLEHYNGTKKI 325
Y F RAK++ Y +++
Sbjct: 312 EDANCKTYTFTCRAKMDTYQDQQRV 336
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 105/323 (32%), Positives = 161/323 (49%), Gaps = 59/323 (18%)
Query: 518 CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI 577
C + A K+FS+INNDYE++F T V C ED+ ++P V+Y F + + E+ D I
Sbjct: 11 CKVNLAKKQFSNINNDYELAFDKDTIVEKC-EDQ-NDVPQVRYNFTNIGALQEVEKDSTI 68
Query: 578 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIA 637
DV+GV + +++ + KT Q+ Y KRD+TLVD S SV MT+WGK A FDA+ + ++A
Sbjct: 69 DVIGVLKEVNDVNQIVSKTTQQPYDKRDLTLVDDSGYSVKMTIWGKTATKFDANPEQIVA 128
Query: 638 VKAARVSEFQGN------------------------------------------------ 649
K A+VS+F G
Sbjct: 129 FKGAKVSDFNGKSLSLLSSGSMSIDPDIAEAYKLKGWYDSNGRSETFAAHTSTAGAAGGR 188
Query: 650 ---LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMY 706
L + +++D+ LGM DK DY +V+ I + +Y AC S++CNKKVI ++NG +
Sbjct: 189 NNELKTVAQVKDENLGMNDKDDYFAVKATIVYIKQDPISYPACASENCNKKVI-EDNGYW 247
Query: 707 RCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPAL 765
C CN +R I+ V + D T S +++ F + I+G+ ++ E E D+ A+
Sbjct: 248 TCASCNINHPKPQHRFIMTVNVSDHTGSFYLSCFDDVGRLIMGMNGDQLMELKETDNEAV 307
Query: 766 KKAL----FTQYIFRLRAKLEHY 784
KA Y F RAK++ Y
Sbjct: 308 NKAFEDANCKTYTFTCRAKMDTY 330
>gi|224122534|ref|XP_002330505.1| predicted protein [Populus trichocarpa]
gi|222872439|gb|EEF09570.1| predicted protein [Populus trichocarpa]
Length = 502
Score = 216 bits (549), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 132/377 (35%), Positives = 192/377 (50%), Gaps = 68/377 (18%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNR 502
PI +L+PYQ +W IKAR+T K +R +NNARG GK+FS DLLD + GEIR T FN +R
Sbjct: 118 PINALNPYQGRWAIKARITAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 177
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F+D++E KVY IS +LKPA K F+ + ND+E+ ++TV C E++ G++P ++ F
Sbjct: 178 FYDVVEVGKVYLISKGSLKPAQKNFNHLKNDWEIFLEATSTVDLCPEED-GSIPQQQFSF 236
Query: 563 VPLKTIAEISPDENI-DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
P+ I EI+ + +I DV+GV I + K +T +R + L D S +V +TLW
Sbjct: 237 KPISEI-EIAENNSIFDVIGVVISVNPSVPILRKNGMET-QRRILNLKDGSGWTVELTLW 294
Query: 622 G--------KEAETFDASNKPVIAVKAARVSEFQGNLL---------------------- 651
G K E D+ P++AVKA +VS+F G L
Sbjct: 295 GDFCNKEGQKLQEMVDSGFFPILAVKAGKVSDFNGKSLGTISSTQLFINPDIPEAHAAKD 354
Query: 652 -----------------------------LMREIQDQQLGMGDKADYCSVRGIIQVFRGS 682
+ +++ + LG DK D+ +VR + +
Sbjct: 355 WFDRGGRDVASMSISKDIAQGGPKNEVRKTVSQVKLEGLGRSDKPDWATVRASVSFIKTD 414
Query: 683 NTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVT 738
Y ACP + CNKKV N ++C++CN+EF+ YR +L V I D T W T
Sbjct: 415 TFCYTACPLMIGDRQCNKKVTRSGNSRWQCDRCNQEFDDCDYRYLLQVQIQDHTGLTWAT 474
Query: 739 LFQNEAESILGVTAQEV 755
FQ E ILG A+E+
Sbjct: 475 AFQESGEEILGYPAKEL 491
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 153/299 (51%), Gaps = 17/299 (5%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI-DVL 63
PA K F+ + ND+E+ ++TV C E++ G++P ++ F P+ I EI+ + +I DV+
Sbjct: 197 PAQKNFNHLKNDWEIFLEATSTVDLCPEED-GSIPQQQFSFKPISEI-EIAENNSIFDVI 254
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG--------KEAETFDASN 115
GV I + K +T +R + L D S +V +TLWG K E D+
Sbjct: 255 GVVISVNPSVPILRKNGMET-QRRILNLKDGSGWTVELTLWGDFCNKEGQKLQEMVDSGF 313
Query: 116 KPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTG 175
P++AVKA +VS+F G K+L S+ L +NPDIPE H + WF +
Sbjct: 314 FPILAVKAGKVSDFNG-KSLGTISSTQLFINPDIPEAHAAKDWFDRGGRDVASMSISKDI 372
Query: 176 GMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNK 231
GG + +++ + LG DK D+ +VR + + Y ACP + CNK
Sbjct: 373 AQGGPKNEVRKTVSQVKLEGLGRSDKPDWATVRASVSFIKTDTFCYTACPLMIGDRQCNK 432
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 290
KV N ++C++CN+EF+ YR +L V I D T W T FQ E ILG A+E+
Sbjct: 433 KVTRSGNSRWQCDRCNQEFDDCDYRYLLQVQIQDHTGLTWATAFQESGEEILGYPAKEL 491
>gi|398396686|ref|XP_003851801.1| hypothetical protein MYCGRDRAFT_109907 [Zymoseptoria tritici
IPO323]
gi|339471681|gb|EGP86777.1| hypothetical protein MYCGRDRAFT_109907 [Zymoseptoria tritici
IPO323]
Length = 646
Score = 215 bits (548), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 194/331 (58%), Gaps = 32/331 (9%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
MLATQ N++I DGTL +I ++ ++ + V ++ +LI+++L ++K E K
Sbjct: 85 GMLATQSNNLINDGTLKRGSICRLTQFTANFVK-----DKHILIVVDLEVLKEYGEPE-K 138
Query: 395 IGNPQPLNTNTDNSSTQQ----TPAATNTNGSNGVHNNVAIPRQASAPVVQTHP------ 444
IG QP+ D + +Q P N G NG + N P+Q S + P
Sbjct: 139 IG--QPVAITYDGAKPEQQEDVKPQPGNIAG-NGFYGNK--PQQQSNSELSARPKATVSH 193
Query: 445 --------IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMF 496
I ++SPY +KWTIKAR T+K I+ W+N G GKLFS++ LD+SGEIRAT F
Sbjct: 194 NGRGNITPIEAVSPYTHKWTIKARCTHKGDIKTWHNKNGEGKLFSVNFLDDSGEIRATGF 253
Query: 497 NDECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNM 555
ND +++++ + + VYYIS+ C ++ A K+FS++NNDYE++F TTV ED G +
Sbjct: 254 NDSVDQWYEFLTEGNVYYISSPCKVQLAKKQFSNVNNDYELTFERDTTVEKA-EDHDG-V 311
Query: 556 PSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQAS 615
P V+Y F + + + D ID +GV + E++ + K+ K Y KR++TLVD S +
Sbjct: 312 PQVRYNFTDIAALQNVDKDTTIDCIGVLQEVGEVNEIVSKSTNKPYSKRELTLVDNSGYN 371
Query: 616 VTMTLWGKEAETFDASNKPVIAVKAARVSEF 646
V +T+WGK AE+FDA + V+A K +VS+F
Sbjct: 372 VRLTVWGKTAESFDARPESVVAFKGVKVSDF 402
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/356 (32%), Positives = 192/356 (53%), Gaps = 19/356 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++NNDYE++F TTV ED G +P V+Y F + + + D ID +GV
Sbjct: 281 AKKQFSNVNNDYELTFERDTTVEKA-EDHDG-VPQVRYNFTDIAALQNVDKDTTIDCIGV 338
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ E++ + K+ K Y KR++TLVD S +V +T+WGK AE+FDA + V+A K +
Sbjct: 339 LQEVGEVNEIVSKSTNKPYSKRELTLVDNSGYNVRLTVWGKTAESFDARPESVVAFKGVK 398
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMG---GGA 181
VS+F G++LSL S ++++PDI E +KL+GW+ + N F + G GG
Sbjct: 399 VSDFG-GRSLSLLSSGSMNIDPDIDEAYKLKGWYDGEGRNGNFASHANSMAAAGATSGGR 457
Query: 182 AGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD---CNKKVIDQNN 238
+ + ++ D + G + D+ S++ I + + Y AC + D CNKKV + +
Sbjct: 458 PSDFKTIAQVYDDKDGQSETTDWFSIKATIVYVKQDSFAYPACRTTDPKPCNKKVTEHDE 517
Query: 239 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA------QEVGE 292
G +RCE+C ++ YR I+ V + D T +W++ F ++G++A +E G+
Sbjct: 518 GQWRCEQCQMTWDRPNYRYIMSVNVSDHTGQIWLSCFDEVGVQVMGMSANDLMALKEEGD 577
Query: 293 STEDHPALKKALFTQYIFRLRAKLEHYNGTKKIP---DGVNINSFAMLATQLNDII 345
A A +IF+ +AK++ + +++ VN +A A +L DII
Sbjct: 578 DKRVGEAFSDANCKSFIFKCKAKMDTFQDQQRVRYQVQYVNPIDYAREAKKLADII 633
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 13/157 (8%)
Query: 637 AVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD--- 693
A R S+F+ + ++ D + G + D+ S++ I + + Y AC + D
Sbjct: 452 ATSGGRPSDFK----TIAQVYDDKDGQSETTDWFSIKATIVYVKQDSFAYPACRTTDPKP 507
Query: 694 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA- 752
CNKKV + + G +RCE+C ++ YR I+ V + D T +W++ F ++G++A
Sbjct: 508 CNKKVTEHDEGQWRCEQCQMTWDRPNYRYIMSVNVSDHTGQIWLSCFDEVGVQVMGMSAN 567
Query: 753 -----QEVGESTEDHPALKKALFTQYIFRLRAKLEHY 784
+E G+ A A +IF+ +AK++ +
Sbjct: 568 DLMALKEEGDDKRVGEAFSDANCKSFIFKCKAKMDTF 604
>gi|428698228|pdb|4GOP|C Chain C, Structure And Conformational Change Of A Replication
Protein A Heterotrimer Bound To Ssdna
gi|428698231|pdb|4GOP|Z Chain Z, Structure And Conformational Change Of A Replication
Protein A Heterotrimer Bound To Ssdna
gi|451928925|pdb|4GNX|C Chain C, Structure Of
gi|451928928|pdb|4GNX|Z Chain Z, Structure Of
Length = 444
Score = 215 bits (547), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 125/361 (34%), Positives = 201/361 (55%), Gaps = 25/361 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++ N+YE++F +ST + C + ++P VKY FV + + + ++ DV+G+
Sbjct: 84 AKKQFSNLQNEYEITFENSTEIEECTD--ATDVPEVKYEFVRINELESVEANQQCDVIGI 141
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF----DASNKPVIAV 121
ELS + K +Q+ KR++TLVDQ SV +TLWGK AETF KPV+A
Sbjct: 142 LDSYGELSEIVSKASQRPVQKRELTLVDQGNRSVKLTLWGKTAETFPTNAGVDEKPVLAF 201
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGG 180
K +V +F GG++LS+ SS + +NPDI E H L+GW+ + +F+P + G G
Sbjct: 202 KGVKVGDF-GGRSLSMFSSSTMLINPDITESHVLRGWYDNDGAHAQFQPYTNGGVGGGAM 260
Query: 181 AAGNLLL-------MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKV 233
G + +++D+ LGM +K DY +VR + + N Y AC S+ CNKKV
Sbjct: 261 GGGGAGANMAERRTIVQVKDENLGMSEKPDYFNVRATVVYIKQENLYYTACASEGCNKKV 320
Query: 234 -IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE 292
+D N +RCEKC++ + T YR IL + D T +W++ F +A ++G++A E+ +
Sbjct: 321 NLDHENN-WRCEKCDRSYATPEYRYILSTNVADATGQMWLSGFNEDATQLIGMSAGELHK 379
Query: 293 STED-----HPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINS---FAMLATQLNDI 344
E+ AL +A Y+F RAK++ +N T ++ ++ + FA +L D
Sbjct: 380 LREESESEFSAALHRAANRMYMFNCRAKMDTFNDTARVRYTISRAAPVDFAKAGMELVDA 439
Query: 345 I 345
I
Sbjct: 440 I 440
Score = 206 bits (523), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 99/215 (46%), Positives = 143/215 (66%), Gaps = 6/215 (2%)
Query: 443 HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNR 502
+PI LSPYQN+WTIKARVT+K+ IR W+N RG GKLFS++LLD+SGEI+AT FND +R
Sbjct: 4 YPIEGLSPYQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSGEIKATGFNDAVDR 63
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F+ +++++ VY IS + A K+FS++ N+YE++F +ST + C + ++P VKY F
Sbjct: 64 FYPLLQENHVYLISKARVNIAKKQFSNLQNEYEITFENSTEIEECT--DATDVPEVKYEF 121
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
V + + + ++ DV+G+ ELS + K +Q+ KR++TLVDQ SV +TLWG
Sbjct: 122 VRINELESVEANQQCDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQGNRSVKLTLWG 181
Query: 623 KEAETF----DASNKPVIAVKAARVSEFQGNLLLM 653
K AETF KPV+A K +V +F G L M
Sbjct: 182 KTAETFPTNAGVDEKPVLAFKGVKVGDFGGRSLSM 216
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 80/137 (58%), Gaps = 7/137 (5%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKV-IDQNNGMYRCEKCNK 713
+++D+ LGM +K DY +VR + + N Y AC S+ CNKKV +D N +RCEKC++
Sbjct: 277 QVKDENLGMSEKPDYFNVRATVVYIKQENLYYTACASEGCNKKVNLDHENN-WRCEKCDR 335
Query: 714 EFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED-----HPALKKA 768
+ T YR IL + D T +W++ F +A ++G++A E+ + E+ AL +A
Sbjct: 336 SYATPEYRYILSTNVADATGQMWLSGFNEDATQLIGMSAGELHKLREESESEFSAALHRA 395
Query: 769 LFTQYIFRLRAKLEHYN 785
Y+F RAK++ +N
Sbjct: 396 ANRMYMFNCRAKMDTFN 412
>gi|384497733|gb|EIE88224.1| hypothetical protein RO3G_12935 [Rhizopus delemar RA 99-880]
Length = 409
Score = 215 bits (547), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 121/354 (34%), Positives = 201/354 (56%), Gaps = 42/354 (11%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N AMLATQ ++ G + +I++I Y+ + +S N+ VLIIL ++I
Sbjct: 48 VSDGINFMQ-AMLATQHTALVEQGQIKRNSIIRINEYVCNLLS-----NKKVLIILSIDI 101
Query: 385 IKPGTEIGFKIGNP--------------------------QPLNTNTDNSSTQQTPAATN 418
+ T++ K+G P QP + + Q+ P +
Sbjct: 102 MT--TDVEAKVGTPVSLDPTSGSAANTPNTPTAAATSTTSQPKPSEPARAPEQRQPTFNS 159
Query: 419 TNGSNGVH-NNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSG 477
TN S+G + + V + ++S PI +++PYQ++WTIKARVT K+PI++W+N++G G
Sbjct: 160 TNSSSGGYFSGVNMQLESS-----LTPIKNINPYQSRWTIKARVTLKSPIKQWHNSKGDG 214
Query: 478 KLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMS 537
KLFS++ LD+SGEI+AT FND+ +R ++M E+ VYY+S + A K+FS+++N+YE++
Sbjct: 215 KLFSVNFLDQSGEIKATAFNDQVDRLYNMFEEGNVYYLSKARVTMARKQFSTLDNEYELT 274
Query: 538 FTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTN 597
T + C D +P + + V + + + +D +GV I + L+ + K
Sbjct: 275 LEAGTEIELCPSDAA--IPQMNFKLVKIGDLDSVEKGATVDAMGVVIQDSGLNEIVTKAT 332
Query: 598 QKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL 651
K KR++T+VD+S SV +TLW K AE FD+S+ P++A + RVS+F G L
Sbjct: 333 GKPTNKRELTIVDESGKSVRLTLWDKTAEEFDSSDSPIVACRGLRVSDFNGRSL 386
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 91/153 (59%), Gaps = 3/153 (1%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS+++N+YE++ T + C D +P + + V + + + +D +GV
Sbjct: 260 ARKQFSTLDNEYELTLEAGTEIELCPSDAA--IPQMNFKLVKIGDLDSVEKGATVDAMGV 317
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
I + L+ + K K KR++T+VD+S SV +TLW K AE FD+S+ P++A + R
Sbjct: 318 VIQDSGLNEIVTKATGKPTNKRELTIVDESGKSVRLTLWDKTAEEFDSSDSPIVACRGLR 377
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGW 158
VS+F G++LSLS + L NPDIPE +L+ W
Sbjct: 378 VSDF-NGRSLSLSSAGTLKKNPDIPEAQRLRQW 409
>gi|254585755|ref|XP_002498445.1| ZYRO0G10428p [Zygosaccharomyces rouxii]
gi|238941339|emb|CAR29512.1| ZYRO0G10428p [Zygosaccharomyces rouxii]
Length = 615
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 150/500 (30%), Positives = 239/500 (47%), Gaps = 101/500 (20%)
Query: 374 RSVLIILELNIIKPGTEI---------GFKIGNP-QPLNTNTDNSSTQQTPAATNTNGSN 423
+ VL++ + ++++ G + + NP + L +T N S AT+T ++
Sbjct: 95 KYVLLVDDFDLVQSGLALFNSSSEFLDHYFAANPNETLRDDTGNRS-----GATST--AS 147
Query: 424 GVHNNVAIPRQASAPVVQTHPIVS-------------LSPYQNKWTIKARVTNKTPIREW 470
G NN P+QA P+ S LSPYQN WTIKARV+ K I+ W
Sbjct: 148 GEPNNTPKPQQAKPNTGSNFPMGSGSQKSRPIFAIEQLSPYQNIWTIKARVSYKGDIKTW 207
Query: 471 NNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSI 530
+N RG GKL +++ LD SGEIR T FND +F++++++ KVY++S L+PA +FS++
Sbjct: 208 HNQRGDGKLLNLNFLDTSGEIRGTAFNDNATKFNEILQEGKVYFLSKARLQPAKPQFSNL 267
Query: 531 NNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAA--- 587
+ YE+ T V C + ++P + F+ L TI + +DVLG+
Sbjct: 268 PHPYELMLDRDTVVEECL--DASDVPKTHFSFIKLNTIQNQEANSTVDVLGIIQTVNPHF 325
Query: 588 ELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQ 647
EL S G K + +RDIT+VD S+ S+ + LW ++A F+ V+A+K+ RV++F
Sbjct: 326 ELISRAG----KRFDRRDITIVDDSEYSIAVGLWNQQAVDFNLPEGSVVAIKSVRVTDFG 381
Query: 648 GNLLLM--------------------------REIQDQQL--------GMGDKADYCSVR 673
G L M R +Q L + Y S R
Sbjct: 382 GKSLSMGFTSTMIPNPEIPEAYSLKGWFDNTGRNLQYHSLKEEVNETNSTTNLVKYISER 441
Query: 674 GIIQVFRGSNT-----------------------TYKACPSQDCNKKVIDQNNGMYRCEK 710
I + N Y AC +++CNKKVI+Q + +RCEK
Sbjct: 442 TTIATAQAQNLGRNEKGDFFSIKAAVSFLKVDNFAYPACLNENCNKKVIEQPDQTWRCEK 501
Query: 711 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA----LK 766
C+ + +R +L + + D T +W+TLF ++A+ +L V A E+ E P +
Sbjct: 502 CDTNHPSPDWRYLLTISVLDETGQLWLTLFNDQAKQLLKVEASELVLLKESDPTAFSKIT 561
Query: 767 KAL-FTQYIFRLRAKLEHYN 785
++L QY FR+RA+ ++YN
Sbjct: 562 QSLQMNQYSFRIRAREDNYN 581
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 117/360 (32%), Positives = 192/360 (53%), Gaps = 32/360 (8%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA +FS++ + YE+ T V C + ++P + F+ L TI + +DVLG
Sbjct: 259 PAKPQFSNLPHPYELMLDRDTVVEECLD--ASDVPKTHFSFIKLNTIQNQEANSTVDVLG 316
Query: 65 VCIDAA---ELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAV 121
+ EL S GK + +RDIT+VD S+ S+ + LW ++A F+ V+A+
Sbjct: 317 IIQTVNPHFELISRAGKR----FDRRDITIVDDSEYSIAVGLWNQQAVDFNLPEGSVVAI 372
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGGG 180
K+ RV++F GGK+LS+ +S + NP+IPE + L+GWF +T N ++ + +
Sbjct: 373 KSVRVTDF-GGKSLSMGFTSTMIPNPEIPEAYSLKGWFDNTGRNLQYHSLKEEVNETN-- 429
Query: 181 AAGNLL-------LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKV 233
+ NL+ + Q Q LG +K D+ S++ + + N Y AC +++CNKKV
Sbjct: 430 STTNLVKYISERTTIATAQAQNLGRNEKGDFFSIKAAVSFLKVDNFAYPACLNENCNKKV 489
Query: 234 IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGES 293
I+Q + +RCEKC+ + +R +L + + D T +W+TLF ++A+ +L V A E+
Sbjct: 490 IEQPDQTWRCEKCDTNHPSPDWRYLLTISVLDETGQLWLTLFNDQAKQLLKVEASELVLL 549
Query: 294 TEDHPA----LKKAL-FTQYIFRLRAKLEHYNGTKKIPDGV----NINSFA---MLATQL 341
E P + ++L QY FR+RA+ ++YN +I V NIN A LA QL
Sbjct: 550 KESDPTAFSKITQSLQMNQYSFRIRAREDNYNNQSRIRYTVSNLHNINYKAEADFLAEQL 609
>gi|324505436|gb|ADY42337.1| Replication factor A 73 kDa subunit [Ascaris suum]
Length = 613
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 155/537 (28%), Positives = 245/537 (45%), Gaps = 80/537 (14%)
Query: 324 KIPDGVNINSFAMLATQLNDIITDGTLSE-FTIVQIKRYIVSGV--SSGSATNRSVLIIL 380
++ DGV S +Q+ D + L E +++I RY+ V S + L I+
Sbjct: 48 RLSDGVFSYSTCTNQSQIADRVEADKLGEGHPVIRILRYLKQAVPKSDKVPQGKISLAII 107
Query: 381 ELNIIKPGTEIGFKIGNPQP----------LNTNTDNSSTQQTPAATNTNGSNGVHNNVA 430
+ ++ I +G P P +N N S N N
Sbjct: 108 DYEVLARDLPI---LGQPIPHSCNERDYRGMNANAIGQSVSHVQPQGNGQPQYIARRNPP 164
Query: 431 IPRQASAPVVQT-HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG 489
P +A++ + Q PI ++PY NKW I VT K +R+ ARG K+F+ ++ DE G
Sbjct: 165 TPNRATSLIGQNLTPIRLITPYVNKWRICGVVTAKEDLRDVKTARGELKVFNFEVTDEEG 224
Query: 490 E-IRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
IR F D ++F+ +++K +YYIS T+K ANK++++ +DYE++ T + PC
Sbjct: 225 GCIRIAAFGDTADKFYAIVQKGSMYYISGGTVKQANKRYNTTGHDYELTMRSDTEISPCI 284
Query: 549 EDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITL 608
+ E P + VPL ++ + ID++ + +EL VT ++ KRD+ L
Sbjct: 285 DRERIEEPRLNLNVVPLAMVSS-RAGQCIDIIAIIDQVSELQQVTQRSTGALLEKRDLHL 343
Query: 609 VDQSQASVTMTLWGKEAETFDAS-NKPVIAVKAARVSEFQGNLLL--------------- 652
+D+S A V +TLWG++A + D + VK A V EF G+ L
Sbjct: 344 IDESGAVVVLTLWGEQARSHDVDLQHQAVGVKGASVREFNGSYSLSALNSTRIEINPDCD 403
Query: 653 --------MRE--------------------IQDQQL-GMGD---------KADYCSVRG 674
RE +D +L G+ D K Y +V
Sbjct: 404 ESKALYVWYREKRPSIDVKRITTGSMGGDSYARDLRLIGIADAMNLGRNEDKGAYFNVTA 463
Query: 675 IIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNS 734
+I + YK+C + C KKVI+ +N YRCEKCN ++F Y L+L + + D++ S
Sbjct: 464 MISSLKADGALYKSCGTNGCKKKVIEMDN-QYRCEKCNLTLDSFKYVLLLSMELSDFSGS 522
Query: 735 VWVTLFQNEAESILGVTAQEVGESTED------HPALKKALFTQYIFRLRAKLEHYN 785
WVT+F+ +A +LG TA E+G+ E + F +Y FR+RAK E YN
Sbjct: 523 HWVTVFEEKATKLLGKTAAELGDLLESNRLDEYNDVFSAVRFREYTFRIRAKSEFYN 579
Score = 189 bits (481), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 183/358 (51%), Gaps = 21/358 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK++++ +DYE++ T + PC + E P + VPL ++ + ID++ +
Sbjct: 259 ANKRYNTTGHDYELTMRSDTEISPCIDRERIEEPRLNLNVVPLAMVSS-RAGQCIDIIAI 317
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS-NKPVIAVKAA 124
+EL VT ++ KRD+ L+D+S A V +TLWG++A + D + VK A
Sbjct: 318 IDQVSELQQVTQRSTGALLEKRDLHLIDESGAVVVLTLWGEQARSHDVDLQHQAVGVKGA 377
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGN 184
V EF G +LS S+ + +NPD E L W+ + + + TG MGG +
Sbjct: 378 SVREFNGSYSLSALNSTRIEINPDCDESKALYVWYREKRPS-IDVKRITTGSMGGDSYAR 436
Query: 185 LLLMREIQD-QQLGMG-DKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
L + I D LG DK Y +V +I + YK+C + C KKVI+ +N YR
Sbjct: 437 DLRLIGIADAMNLGRNEDKGAYFNVTAMISSLKADGALYKSCGTNGCKKKVIEMDN-QYR 495
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED------ 296
CEKCN ++F Y L+L + + D++ S WVT+F+ +A +LG TA E+G+ E
Sbjct: 496 CEKCNLTLDSFKYVLLLSMELSDFSGSHWVTVFEEKATKLLGKTAAELGDLLESNRLDEY 555
Query: 297 HPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDIITDGTLSEFT 354
+ F +Y FR+RAK E YN T++I V +LN++ D + E T
Sbjct: 556 NDVFSAVRFREYTFRIRAKSEFYNDTERIKWSV---------FELNNVDYDKYVEELT 604
>gi|258568498|ref|XP_002584993.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237906439|gb|EEP80840.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 561
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 160/528 (30%), Positives = 249/528 (47%), Gaps = 91/528 (17%)
Query: 341 LNDIITDGTLSEFTIVQIKRYIVSGVS----------SGSATNR-SVLIILELNIIKPGT 389
LN + G L V++K + + V +G+ T+ +LI+L+L++++
Sbjct: 6 LNHLAISGALRRGCFVRLKSFQANSVKGKRSAFPHTLAGNETDYIRILIVLDLDVLEDLG 65
Query: 390 EIGFKIGNPQPLNTNTDNSSTQQTPAAT--NTNGSNGVHNNVAIPRQ-----ASAPVV-- 440
E ++G P+PL + +TPA T ++NG G+ + PRQ AS P +
Sbjct: 66 E-SERLGEPKPLEMKAPEA---ETPATTTISSNGFYGMAPQHSAPRQQNHQRASVPTMAP 121
Query: 441 ---QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFN 497
+PI +LSPY +KWTIKAR TNK+ I+ W+N G G+LF+++LLD+SGEIRAT F
Sbjct: 122 AHANIYPIEALSPYSHKWTIKARCTNKSAIKTWHNRNGEGRLFNVNLLDDSGEIRATAFK 181
Query: 498 DECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPC-NEDEVGNM 555
++C+ + + E+ VYYIS+ C ++ A + FS++NNDYE++F T + N D+V
Sbjct: 182 EQCDLLYPLFEEGSVYYISSPCRVQMAKRGFSNVNNDYELTFEKDTVIEKAENNDDV--- 238
Query: 556 PSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQAS 615
P +++ F + + + ID LGV +++ V K K Y KR++TLVD + S
Sbjct: 239 PQMRFNFTNIGGLQSVEKGTTIDFLGVLKSVDQVTEVPSKATGKRYTKRELTLVDDTGFS 298
Query: 616 VTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMRE----IQDQQLGMGDK-ADYC 670
V +T+WG A TFD VIA K +VS+F G L + D + K +
Sbjct: 299 VRLTIWGNMANTFDVMPDSVIAFKGVKVSDFGGRSLSLLSSGTITADPDIEEAHKLKGWY 358
Query: 671 SVRGIIQVFR----GSNTTYKACPSQDCNKKVID-------------------------Q 701
+G F N T QD K +++ Q
Sbjct: 359 DAQGKFDQFTFHAFSENATGATGSRQDPPKTIVEVRDEQLGMSEKPDYFALRATVVFIKQ 418
Query: 702 NNGMY------RCEK--------------CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQ 741
+N Y RC K C K YR IL + D T +WV F
Sbjct: 419 DNICYPACVQERCNKKVIQLDSGEWLCEHCEKSTPQPEYRYILSANLSDHTGQLWVNCFD 478
Query: 742 NEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHY 784
S++G+TA + E E+ A+ A + F+ RAKL+++
Sbjct: 479 EVGRSLMGITANSLMEMKENDDKVASEAILDANCKMWNFKCRAKLDNF 526
Score = 202 bits (513), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 114/329 (34%), Positives = 174/329 (52%), Gaps = 13/329 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPC-NEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
A + FS++NNDYE++F T + N D+V P +++ F + + + ID LG
Sbjct: 208 AKRGFSNVNNDYELTFEKDTVIEKAENNDDV---PQMRFNFTNIGGLQSVEKGTTIDFLG 264
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V +++ V K K Y KR++TLVD + SV +T+WG A TFD VIA K
Sbjct: 265 VLKSVDQVTEVPSKATGKRYTKRELTLVDDTGFSVRLTIWGNMANTFDVMPDSVIAFKGV 324
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ---TNTRFEPVSQRTGGMGGGA 181
+VS+F GG++LSL S ++ +PDI E HKL+GW+ Q F S+ G G
Sbjct: 325 KVSDF-GGRSLSLLSSGTITADPDIEEAHKLKGWYDAQGKFDQFTFHAFSENATGATGSR 383
Query: 182 AGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMY 241
+ E++D+QLGM +K DY ++R + + N Y AC + CNKKVI ++G +
Sbjct: 384 QDPPKTIVEVRDEQLGMSEKPDYFALRATVVFIKQDNICYPACVQERCNKKVIQLDSGEW 443
Query: 242 RCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH---- 297
CE C K YR IL + D T +WV F S++G+TA + E E+
Sbjct: 444 LCEHCEKSTPQPEYRYILSANLSDHTGQLWVNCFDEVGRSLMGITANSLMEMKENDDKVA 503
Query: 298 -PALKKALFTQYIFRLRAKLEHYNGTKKI 325
A+ A + F+ RAKL+++ T+++
Sbjct: 504 SEAILDANCKMWNFKCRAKLDNFQDTERL 532
>gi|297846122|ref|XP_002890942.1| hypothetical protein ARALYDRAFT_313748 [Arabidopsis lyrata subsp.
lyrata]
gi|297336784|gb|EFH67201.1| hypothetical protein ARALYDRAFT_313748 [Arabidopsis lyrata subsp.
lyrata]
Length = 822
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 134/429 (31%), Positives = 206/429 (48%), Gaps = 75/429 (17%)
Query: 427 NNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD 486
N + R + P + PI +L+PYQ +WTIK RV++K +R +NN RG GKLFS DLLD
Sbjct: 251 NRGPVARNEAPPRI--IPIAALNPYQGRWTIKVRVSSKAELRRFNNPRGEGKLFSFDLLD 308
Query: 487 -ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVI 545
+ GEIR T FND ++F D I VY IS LKPA K ++ + NDYE+ ++T+
Sbjct: 309 ADGGEIRVTCFNDAVDQFFDQIVVGNVYLISRGNLKPAQKNYNHLPNDYEIHLDSASTIQ 368
Query: 546 PCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRD 605
C +D G +P ++ F + I + + D++G+ + K N KR
Sbjct: 369 RCEDD--GTIPRNQFHFRNISDIENMESNSMTDLIGIVSSIGTTVPIMRK-NGTEVDKRA 425
Query: 606 ITLVDQSQASVTMTLWGK----EAETF----DASNKPVIAVKAARVSEFQGNLL------ 651
+ L D S SV +T+WG E + D+ PV+A+KA R+ EF G +
Sbjct: 426 LQLKDMSGRSVEVTMWGNFCSAEGQQLQNLCDSGVFPVLALKAGRIGEFNGKQVSTIGSS 485
Query: 652 --------------------------------------------LMREIQDQQLGMGDKA 667
++ +I+D++LG +K
Sbjct: 486 QFFVEPDFPEARELRQWYEREGRNANFTSISREFSGVGRQEVRKVITQIKDEKLGTSEKP 545
Query: 668 DYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLI 723
D+ +V I + N Y ACP + C+KKV + +G +RCEKC+K + YR I
Sbjct: 546 DWITVCATISFMKVENFCYTACPIMNGDRPCSKKVTNNGDGTWRCEKCDKCVDECDYRYI 605
Query: 724 LPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-------GESTEDHPALKKALFTQYIFR 776
L + + D T W T FQ E I+G++A+++ E + ++ FT+YIF+
Sbjct: 606 LQIQLQDHTGLTWATAFQEAGEEIMGMSAKDLYYVKYENQEEEKFEDIIRSVAFTKYIFK 665
Query: 777 LRAKLEHYN 785
L+ K E Y+
Sbjct: 666 LKIKEETYS 674
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 172/341 (50%), Gaps = 26/341 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K ++ + NDYE+ ++T+ C +D G +P ++ F + I + + D++G
Sbjct: 345 PAQKNYNHLPNDYEIHLDSASTIQRCEDD--GTIPRNQFHFRNISDIENMESNSMTDLIG 402
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK----EAETF----DASNK 116
+ + K N KR + L D S SV +T+WG E + D+
Sbjct: 403 IVSSIGTTVPIMRK-NGTEVDKRALQLKDMSGRSVEVTMWGNFCSAEGQQLQNLCDSGVF 461
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTG 175
PV+A+KA R+ EF G K +S SS + PD PE +L+ W+ + N F +S+
Sbjct: 462 PVLALKAGRIGEFNG-KQVSTIGSSQFFVEPDFPEARELRQWYEREGRNANFTSISREFS 520
Query: 176 GMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNK 231
G+G ++ +I+D++LG +K D+ +V I + N Y ACP + C+K
Sbjct: 521 GVGRQEVRKVIT--QIKDEKLGTSEKPDWITVCATISFMKVENFCYTACPIMNGDRPCSK 578
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV- 290
KV + +G +RCEKC+K + YR IL + + D T W T FQ E I+G++A+++
Sbjct: 579 KVTNNGDGTWRCEKCDKCVDECDYRYILQIQLQDHTGLTWATAFQEAGEEIMGMSAKDLY 638
Query: 291 ------GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
E + ++ FT+YIF+L+ K E Y+ +++
Sbjct: 639 YVKYENQEEEKFEDIIRSVAFTKYIFKLKIKEETYSDEQRV 679
Score = 43.1 bits (100), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 14/116 (12%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILEL-- 382
+ DG+++ + ML T LN ++ G++ +IV++ Y+ S + R ++II++L
Sbjct: 45 LSDGIHLQA-GMLNTTLNSLVIQGSIQLGSIVRLTHYVCSLIQG-----RRIVIIMQLEV 98
Query: 383 -----NIIKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSN-GVHNNVAIP 432
+II E G + G P+NT ++ QQ ++ NG GV N P
Sbjct: 99 IVAKCDIIGTPNEPGQRGGAAVPVNTQSNGGFDQQQARRSDVNGGRYGVSANSPQP 154
>gi|357484641|ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
gi|355513943|gb|AES95566.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
Length = 1723
Score = 212 bits (539), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 146/458 (31%), Positives = 221/458 (48%), Gaps = 93/458 (20%)
Query: 398 PQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTI 457
PQP+N Q P+ G G N A PR PI +L+PYQN WTI
Sbjct: 244 PQPVN---------QQPSPMYNRGPTG--RNDAPPR--------IIPISALNPYQNMWTI 284
Query: 458 KARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKDKVYYIS 516
KARVT K +R + N+RG GK+FS DLLD + GEIRAT FN +F+++IE KVY +S
Sbjct: 285 KARVTAKGELRTYTNSRGQGKVFSFDLLDSDRGEIRATCFNTVAEQFYNVIEVGKVYLVS 344
Query: 517 NCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN 576
+LKPA K F+ + ND E++ ++ + PC +D ++ Y F P+ I + +
Sbjct: 345 RGSLKPAQKNFNHLPNDQEITLDITSVIQPCVDDN--SILQQIYNFRPIGDIENMQNNSI 402
Query: 577 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET--------F 628
+DV+ V + +S+ K +T KR + L D S SV +T+WG T
Sbjct: 403 VDVIAVVTSISPTASIIRKNGTET-QKRSLQLKDMSGRSVELTVWGSFCNTEGQKLQNIC 461
Query: 629 DASNKPVIAVKAARVSEFQG---------NLLL--------------------------- 652
D+ P++ VK+ARV++F G LL+
Sbjct: 462 DSGEFPILVVKSARVNDFNGKSIGTIATSQLLVEPDFPEAFTLRGWFDQEGRNVPSQSIS 521
Query: 653 --------------MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS----QDC 694
+ +I+D+ LG DK D+ S+ + F+ N Y ACP+ + C
Sbjct: 522 RESSSFGKSEVQKTISQIKDENLGTSDKPDWISICANVVFFKYDNFYYTACPNMIGDRKC 581
Query: 695 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 754
NKKV D + + CE+C+ + YR +L + I D T WVT FQ E I+G+ A++
Sbjct: 582 NKKVTDNGDKTWHCERCDTSLSC-DYRYLLQMQIQDHTGMTWVTAFQEGGEDIMGMPAKD 640
Query: 755 V-------GESTEDHPALKKALFTQYIFRLRAKLEHYN 785
+ + + + K +FT+Y+F+L+ K E +N
Sbjct: 641 LFSVKFEEKDEEKFKEIISKVVFTKYMFKLKVKEETFN 678
Score = 157 bits (396), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 124/439 (28%), Positives = 202/439 (46%), Gaps = 57/439 (12%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K F+ + ND E++ ++ + PC +D ++ Y F P+ I + + +DV+
Sbjct: 350 PAQKNFNHLPNDQEITLDITSVIQPCVDDN--SILQQIYNFRPIGDIENMQNNSIVDVIA 407
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET--------FDASNK 116
V + +S+ K +T KR + L D S SV +T+WG T D+
Sbjct: 408 VVTSISPTASIIRKNGTET-QKRSLQLKDMSGRSVELTVWGSFCNTEGQKLQNICDSGEF 466
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGG 176
P++ VK+ARV++F G K++ +S L + PD PE L+GWF Q S
Sbjct: 467 PILVVKSARVNDFNG-KSIGTIATSQLLVEPDFPEAFTLRGWFD-QEGRNVPSQSISRES 524
Query: 177 MGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS----QDCNKK 232
G + + +I+D+ LG DK D+ S+ + F+ N Y ACP+ + CNKK
Sbjct: 525 SSFGKSEVQKTISQIKDENLGTSDKPDWISICANVVFFKYDNFYYTACPNMIGDRKCNKK 584
Query: 233 VIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-- 290
V D + + CE+C+ + YR +L + I D T WVT FQ E I+G+ A+++
Sbjct: 585 VTDNGDKTWHCERCDTSLSC-DYRYLLQMQIQDHTGMTWVTAFQEGGEDIMGMPAKDLFS 643
Query: 291 -----GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDGV----NINSFAMLATQL 341
+ + + K +FT+Y+F+L+ K E +N ++ V I +FA + L
Sbjct: 644 VKFEEKDEEKFKEIISKVVFTKYMFKLKVKEETFNDEARVKSTVVKAEKIVNFASESKSL 703
Query: 342 NDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKIGNP--- 398
D+I ++K G + SA +N PG+ IG
Sbjct: 704 LDLID----------KLKSEKAEGTTINSA----------INTTGPGS---LPIGQATPP 740
Query: 399 --QPLNTNTDNSSTQQTPA 415
P+N+NT+ TPA
Sbjct: 741 VYNPINSNTNTGRDYGTPA 759
>gi|355704842|gb|EHH30767.1| hypothetical protein EGK_20543 [Macaca mulatta]
Length = 267
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 145/239 (60%), Gaps = 6/239 (2%)
Query: 92 VDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPE 151
+D S+ VT TLWG++A+ FD S +PV+A+K ARVS+F GG++LS+ SS + NPDIPE
Sbjct: 1 MDTSRKVVTATLWGEDADKFDGSRQPVLAIKGARVSDF-GGRSLSVLSSSTIIANPDIPE 59
Query: 152 CHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGII 211
+KL+GWF +S G GG N + E++ + LG +K DY S +
Sbjct: 60 AYKLRGWFDAGQALDGVSISDLKSGSVGGGNTNWKTLYEVKFENLGQSNKPDYFSSVATV 119
Query: 212 QVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW 271
R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF F Y +IL V I D+ + W
Sbjct: 120 VYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYHMILSVNIADFQENQW 179
Query: 272 VTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYNGTKKI 325
VT FQ AE+ILG A +G+ + + + A F +IFR+R K+E YN +I
Sbjct: 180 VTCFQESAEAILGQNAAYLGDLKDKNEQAFEEVFQNANFRSFIFRVRVKVETYNEESRI 238
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 117/234 (50%), Gaps = 56/234 (23%)
Query: 609 VDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG-------------------- 648
+D S+ VT TLWG++A+ FD S +PV+A+K ARVS+F G
Sbjct: 1 MDTSRKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEA 60
Query: 649 -------------------------------NLLLMREIQDQQLGMGDKADYCSVRGIIQ 677
N + E++ + LG +K DY S +
Sbjct: 61 YKLRGWFDAGQALDGVSISDLKSGSVGGGNTNWKTLYEVKFENLGQSNKPDYFSSVATVV 120
Query: 678 VFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWV 737
R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF F Y +IL V I D+ + WV
Sbjct: 121 YLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYHMILSVNIADFQENQWV 180
Query: 738 TLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYNK 786
T FQ AE+ILG A +G+ + + + A F +IFR+R K+E YN+
Sbjct: 181 TCFQESAEAILGQNAAYLGDLKDKNEQAFEEVFQNANFRSFIFRVRVKVETYNE 234
>gi|365762222|gb|EHN03823.1| Rfa1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 661
Score = 209 bits (532), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 128/414 (30%), Positives = 205/414 (49%), Gaps = 67/414 (16%)
Query: 434 QASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRA 493
Q S P+ I LSPYQN WTIKARV+ K I+ W+N RG GKLF+++ LD SGEIRA
Sbjct: 219 QKSRPIF---AIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEIRA 275
Query: 494 TMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVG 553
T FND +F++++++ KVYY+S L+PA +F+++ + YE++ T V C ++
Sbjct: 276 TAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVVEECFDE--S 333
Query: 554 NMPSVKYCFVPLKTIAEISPDENIDVLGVC------------------------IDAAEL 589
N+P + F+ L I + N+DVLG+ +D +
Sbjct: 334 NVPKTHFNFIKLDAIQNQEVNSNVDVLGIIQTINPQFELTSRAGKKFDRRDITIVDDSGF 393
Query: 590 SSVTGKTNQKTY----------MKRDITLVDQSQASVTMTL------------------W 621
S G NQ+ + + + D S++M W
Sbjct: 394 SISVGLWNQQALDFNLPEGSVAAIKGVRVTDFGGKSLSMGFSSTLIPNPEIPEAYALKGW 453
Query: 622 ----GKEAETFDASNKPVIAVK-AARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGII 676
G+ A +P + + AA +++F + + Q + LG +K D+ SV+ I
Sbjct: 454 YDSKGRNANFTTLKQEPGVGGQSAASLTKFIAQRITIARAQAENLGRSEKGDFFSVKAAI 513
Query: 677 QVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW 736
+ N Y AC +++CNKKV++Q +G +RCEKC+ + +R IL + I D TN +W
Sbjct: 514 SFLKVDNFAYPACSNENCNKKVLEQPDGTWRCEKCDTNNASPNWRYILTISIIDETNQLW 573
Query: 737 VTLFQNEAESILGVTAQEVGESTEDHP-----ALKKALFTQYIFRLRAKLEHYN 785
+TLF ++A+ +LGV A + E+ P + +Y FR+RA+ + YN
Sbjct: 574 LTLFDDQAKQLLGVDANTLMSLKEEDPNEFTKITQSIQMNEYDFRIRAREDTYN 627
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 189/337 (56%), Gaps = 24/337 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA +F+++ + YE++ T V C ++ N+P + F+ L I + N+DVLG
Sbjct: 304 PAKPQFTNLTHPYELNLDRDTVVEECFDE--SNVPKTHFNFIKLDAIQNQEVNSNVDVLG 361
Query: 65 VC--IDAA-ELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAV 121
+ I+ EL+S GK + +RDIT+VD S S+++ LW ++A F+ V A+
Sbjct: 362 IIQTINPQFELTSRAGKK----FDRRDITIVDDSGFSISVGLWNQQALDFNLPEGSVAAI 417
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGG 180
K RV++F GGK+LS+ SS L NP+IPE + L+GW+ ++ N F + Q G +GG
Sbjct: 418 KGVRVTDF-GGKSLSMGFSSTLIPNPEIPEAYALKGWYDSKGRNANFTTLKQEPG-VGGQ 475
Query: 181 AAGNL-------LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKV 233
+A +L + + Q + LG +K D+ SV+ I + N Y AC +++CNKKV
Sbjct: 476 SAASLTKFIAQRITIARAQAENLGRSEKGDFFSVKAAISFLKVDNFAYPACSNENCNKKV 535
Query: 234 IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGES 293
++Q +G +RCEKC+ + +R IL + I D TN +W+TLF ++A+ +LGV A +
Sbjct: 536 LEQPDGTWRCEKCDTNNASPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSL 595
Query: 294 TEDHP-----ALKKALFTQYIFRLRAKLEHYNGTKKI 325
E+ P + +Y FR+RA+ + YN +I
Sbjct: 596 KEEDPNEFTKITQSIQMNEYDFRIRAREDTYNDQSRI 632
>gi|448514363|ref|XP_003867094.1| Rfa1 DNA replication factor A [Candida orthopsilosis Co 90-125]
gi|380351432|emb|CCG21656.1| Rfa1 DNA replication factor A [Candida orthopsilosis Co 90-125]
Length = 628
Score = 208 bits (530), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 130/425 (30%), Positives = 210/425 (49%), Gaps = 75/425 (17%)
Query: 433 RQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIR 492
+ A + PI ++SPYQN WTIKARV+ K +R W+NA+G GK+FS++ LDES EI+
Sbjct: 174 KAGQAAPARISPIETISPYQNTWTIKARVSYKGELRSWSNAKGEGKVFSVNFLDESDEIK 233
Query: 493 ATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEV 552
A+ FN+ R ++++E+ KVY+IS + A KKF+++ + YE++ T + C ++
Sbjct: 234 ASAFNESAERAYNLLEEGKVYFISKAKVGAARKKFNNLTHPYELTLEKDTEITECFDE-- 291
Query: 553 GNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS 612
++P + + FV L + + P+ IDVLG +T K+ K + +RDIT+VD++
Sbjct: 292 SDVPKLNFNFVKLDKVQNLEPNAIIDVLGALKIVNPPFQITAKSTGKAFDRRDITIVDET 351
Query: 613 QASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREI----------QDQQL- 661
+V + LW A F VIA K +VS+F G L + + + QL
Sbjct: 352 GFAVDVGLWNNTAVDFSVEEGTVIAFKGCKVSDFNGRSLSLTQAGSIVPNPGTPESYQLK 411
Query: 662 ----GMGDKADYCSV----------------RGIIQV----------------------- 678
+G K ++ S+ + I QV
Sbjct: 412 GWFDNIGVKENFKSMKTETNASSSIDRLANRKTIAQVEEENNNLDSEQSGYFTIKACFSF 471
Query: 679 FRGSNTTYKAC------------PSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPV 726
+ N Y AC P CNKK+ N+ +RCE+C+ ++ TYR IL +
Sbjct: 472 TKPENFAYPACTNIIANTTDSTKPGLPCNKKLAPVND-KWRCERCDLSYDEPTYRYILYI 530
Query: 727 MIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPAL------KKALFTQYIFRLRAK 780
I D T +W TLF +A+ +LG+ A E+ + + ++ + +A F +Y FRLR K
Sbjct: 531 SITDATGQLWTTLFDEQAKKLLGIDANELMKMSNENEKMVVAEYISRAYFKEYNFRLRVK 590
Query: 781 LEHYN 785
+ +N
Sbjct: 591 QDTFN 595
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 172/341 (50%), Gaps = 25/341 (7%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A KKF+++ + YE++ T + C ++ ++P + + FV L + + P+ IDVLG
Sbjct: 264 ARKKFNNLTHPYELTLEKDTEITECFDE--SDVPKLNFNFVKLDKVQNLEPNAIIDVLGA 321
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+T K+ K + +RDIT+VD++ +V + LW A F VIA K +
Sbjct: 322 LKIVNPPFQITAKSTGKAFDRRDITIVDETGFAVDVGLWNNTAVDFSVEEGTVIAFKGCK 381
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGG-GAAG 183
VS+F G++LSL+ + + NP PE ++L+GWF + F+ + T
Sbjct: 382 VSDF-NGRSLSLTQAGSIVPNPGTPESYQLKGWFDNIGVKENFKSMKTETNASSSIDRLA 440
Query: 184 NLLLMREIQDQQLGM-GDKADYCSVRGIIQVFRGSNTTYKAC------------PSQDCN 230
N + +++++ + +++ Y +++ + N Y AC P CN
Sbjct: 441 NRKTIAQVEEENNNLDSEQSGYFTIKACFSFTKPENFAYPACTNIIANTTDSTKPGLPCN 500
Query: 231 KKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 290
KK+ N+ +RCE+C+ ++ TYR IL + I D T +W TLF +A+ +LG+ A E+
Sbjct: 501 KKLAPVND-KWRCERCDLSYDEPTYRYILYISITDATGQLWTTLFDEQAKKLLGIDANEL 559
Query: 291 GESTEDHPAL------KKALFTQYIFRLRAKLEHYNGTKKI 325
+ + ++ + +A F +Y FRLR K + +N K+
Sbjct: 560 MKMSNENEKMVVAEYISRAYFKEYNFRLRVKQDTFNDQLKL 600
>gi|401837707|gb|EJT41601.1| RFA1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 621
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 127/414 (30%), Positives = 204/414 (49%), Gaps = 67/414 (16%)
Query: 434 QASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRA 493
Q S P+ I LSPYQN WTIKARV+ K I+ W+N RG GKLF+++ LD SGEIRA
Sbjct: 179 QKSRPIF---AIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEIRA 235
Query: 494 TMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVG 553
T FND +F++++++ KVYY+S L+PA +F+++ + YE++ T V C ++
Sbjct: 236 TAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVVEECFDE--S 293
Query: 554 NMPSVKYCFVPLKTIAEISPDENIDVLGVC------------------------IDAAEL 589
N+P + F+ L I + N+DVLG+ +D +
Sbjct: 294 NVPKTHFNFIKLDAIQNQEVNSNVDVLGIIQTINPQFELTSRAGKKFDRRDITIVDDSGF 353
Query: 590 SSVTGKTNQKTY----------MKRDITLVDQSQASVTMTL------------------W 621
S G NQ+ + + + D S++M W
Sbjct: 354 SISVGLWNQQALDFNLPEGSVAAIKGVRVTDFGGKSLSMGFSSTLIPNPEIPEAYALKGW 413
Query: 622 ----GKEAETFDASNKPVIAVK-AARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGII 676
G+ A +P + + AA +++F + + Q + LG +K D+ S + I
Sbjct: 414 YDSKGRNANFTTLKQEPGVGGQSAASLTKFIAQRITIARAQAENLGRSEKGDFFSAKAAI 473
Query: 677 QVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW 736
+ N Y AC +++CNKKV++Q +G +RCEKC+ + +R IL + I D TN +W
Sbjct: 474 SFLKVDNFAYPACSNENCNKKVLEQPDGTWRCEKCDTNNASPNWRYILTISIIDETNQLW 533
Query: 737 VTLFQNEAESILGVTAQEVGESTEDHP-----ALKKALFTQYIFRLRAKLEHYN 785
+TLF ++A+ +LGV A + E+ P + +Y FR+RA+ + YN
Sbjct: 534 LTLFDDQAKQLLGVDANTLMSLKEEDPNEFTKITQSIQMNEYDFRIRAREDTYN 587
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 115/337 (34%), Positives = 188/337 (55%), Gaps = 24/337 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA +F+++ + YE++ T V C ++ N+P + F+ L I + N+DVLG
Sbjct: 264 PAKPQFTNLTHPYELNLDRDTVVEECFDE--SNVPKTHFNFIKLDAIQNQEVNSNVDVLG 321
Query: 65 VC--IDAA-ELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAV 121
+ I+ EL+S GK + +RDIT+VD S S+++ LW ++A F+ V A+
Sbjct: 322 IIQTINPQFELTSRAGKK----FDRRDITIVDDSGFSISVGLWNQQALDFNLPEGSVAAI 377
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGG 180
K RV++F GGK+LS+ SS L NP+IPE + L+GW+ ++ N F + Q G +GG
Sbjct: 378 KGVRVTDF-GGKSLSMGFSSTLIPNPEIPEAYALKGWYDSKGRNANFTTLKQEPG-VGGQ 435
Query: 181 AAGNL-------LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKV 233
+A +L + + Q + LG +K D+ S + I + N Y AC +++CNKKV
Sbjct: 436 SAASLTKFIAQRITIARAQAENLGRSEKGDFFSAKAAISFLKVDNFAYPACSNENCNKKV 495
Query: 234 IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGES 293
++Q +G +RCEKC+ + +R IL + I D TN +W+TLF ++A+ +LGV A +
Sbjct: 496 LEQPDGTWRCEKCDTNNASPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSL 555
Query: 294 TEDHP-----ALKKALFTQYIFRLRAKLEHYNGTKKI 325
E+ P + +Y FR+RA+ + YN +I
Sbjct: 556 KEEDPNEFTKITQSIQMNEYDFRIRAREDTYNDQSRI 592
>gi|393245622|gb|EJD53132.1| replication factor-a protein [Auricularia delicata TFB-10046 SS5]
Length = 617
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 153/543 (28%), Positives = 257/543 (47%), Gaps = 95/543 (17%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG N + M TQLN I +G L +V++K ++ + + ++++LE+ +
Sbjct: 55 VSDGRNY-APVMFTTQLNQQIEEGKLGRNAVVRVK-----SMTCNTMQEKRLIVLLEVEV 108
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAA-------------------------TNT 419
++ + +KIG P+ ++ ++ + A
Sbjct: 109 LEA---LEYKIGEPKGVDKEGATTAAAGSEAGAESSAAAARAAPLPPAAQQPAPAKQVQQ 165
Query: 420 NGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
A S P +PI LSPYQNKWTI+ARVTNK+ ++ W+N +G GKL
Sbjct: 166 APRAQQQAASAPAASRSGPPQPVYPIEGLSPYQNKWTIQARVTNKSEMKSWSNTKGEGKL 225
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FS +D+SGEIRAT FN + +++ VYY++ + A KKFS++ N+YE++
Sbjct: 226 FSCTFMDQSGEIRATAFNTAAEELFEKLKEGNVYYVTKARVSVAKKKFSNLPNEYEITMD 285
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
+T + +D++ ++P KY FV LKT+ ++ DE DV+GV + ++ KT Q+
Sbjct: 286 RNTEIEEIVDDDI-DVPLQKYEFVSLKTLDTLNKDEVCDVIGVVQEVGPVNKFLAKTTQR 344
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQ 659
KRD+T+VDQS+ SV +TLWGK+AE + +KPV+A K +V +F G L +
Sbjct: 345 ELTKRDLTIVDQSECSVRLTLWGKQAENWSRDDKPVVAFKGCKVGDFGGRTLSLLSSGSL 404
Query: 660 QLGMGDKADYCSVRGIIQVFRGSNTTY------------------KACPSQDCNKK--VI 699
+ D + +RG +G + T+ +A P + VI
Sbjct: 405 AID-PDLEESHRLRGWFDA-QGKDATFHSFSSGGGGVASGPIDRLEAMPLAAVREMEIVI 462
Query: 700 DQ---------------NNGMY--RCEKCNKE----------------FNTFTYRLILPV 726
DQ ++ M+ C++CNK+ ++ +YR +L +
Sbjct: 463 DQPQLFVTRAAVVHVKADDKMWYAACQRCNKKISEASGKWRCEHCKQNWDEPSYRYMLSI 522
Query: 727 MIGDWTNSVWVTLFQNEAESILGVTAQEV----GESTEDHPAL-KKALFTQYIFRLRAKL 781
+ D T+ W+T F + +I+G + ++ G+ A+ KKA+ Y F RAK
Sbjct: 523 AVADNTSQCWLTAFNDAGLTIVGQSGNDLHKIKGQDESGFNAIVKKAVGKYYTFSCRAKS 582
Query: 782 EHY 784
E Y
Sbjct: 583 ETY 585
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/322 (34%), Positives = 183/322 (56%), Gaps = 13/322 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A KKFS++ N+YE++ +T + +D++ ++P KY FV LKT+ ++ DE DV+GV
Sbjct: 269 AKKKFSNLPNEYEITMDRNTEIEEIVDDDI-DVPLQKYEFVSLKTLDTLNKDEVCDVIGV 327
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ ++ KT Q+ KRD+T+VDQS+ SV +TLWGK+AE + +KPV+A K +
Sbjct: 328 VQEVGPVNKFLAKTTQRELTKRDLTIVDQSECSVRLTLWGKQAENWSRDDKPVVAFKGCK 387
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAGN 184
V +F GG+TLSL S L+++PD+ E H+L+GWF Q + F S GG+ G
Sbjct: 388 VGDF-GGRTLSLLSSGSLAIDPDLEESHRLRGWFDAQGKDATFHSFSSGGGGVASGPIDR 446
Query: 185 L--LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
L + + +++ ++ + + + ++ V Y AC Q CNKK I + +G +R
Sbjct: 447 LEAMPLAAVREMEIVIDQPQLFVTRAAVVHVKADDKMWYAAC--QRCNKK-ISEASGKWR 503
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV----GESTEDHP 298
CE C + ++ +YR +L + + D T+ W+T F + +I+G + ++ G+
Sbjct: 504 CEHCKQNWDEPSYRYMLSIAVADNTSQCWLTAFNDAGLTIVGQSGNDLHKIKGQDESGFN 563
Query: 299 AL-KKALFTQYIFRLRAKLEHY 319
A+ KKA+ Y F RAK E Y
Sbjct: 564 AIVKKAVGKYYTFSCRAKSETY 585
>gi|224006215|ref|XP_002292068.1| replication protein a [Thalassiosira pseudonana CCMP1335]
gi|220972587|gb|EED90919.1| replication protein a [Thalassiosira pseudonana CCMP1335]
Length = 570
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 141/524 (26%), Positives = 250/524 (47%), Gaps = 93/524 (17%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
MLATQLN ++ ++ +I+ +K +I++ + SG +L+ +E+N + PG +
Sbjct: 33 GMLATQLNPLVASSQITTNSILTVKDFIINTMGSGQKV--CILLNVEVNGVNPGN----R 86
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTH-------PIVS 447
IG+PQ + + P T T G+ ++ NV SAP+V+T PI
Sbjct: 87 IGSPQDIQ--------KVGPNTTATGGAQPMYGNVQANNNGSAPIVRTTADGQPVTPISG 138
Query: 448 LSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNRFHDM 506
L+ Y N+W I+A+VTNK+ ++ W+NA+G G LFS+ LLD SG +++ T F + ++F++M
Sbjct: 139 LNMYSNRWVIRAKVTNKSDVKTWSNAKGEGSLFSVTLLDSSGYDVKCTFFKEAVDKFYNM 198
Query: 507 IEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLK 566
+E+ +VY S LK AN +++ + +E++F ++ + + D G Y FV +
Sbjct: 199 LEEGRVYTFSGGRLKVANMAYNNCKSQFEITFDQNSEI---HLDAEGAEIRENYDFVKIA 255
Query: 567 TIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE 626
+ + P+ +D+L V ++S++ K + K K D+ + D S A V +TLWG A+
Sbjct: 256 ELENMEPNSYVDILAVVKHVGDVSTIVSKKSGKEMTKVDLVVEDDSGADVKLTLWGNSAQ 315
Query: 627 TFDA--SNKPVIAVKAARVSEFQGNLL----------------LMR-------------- 654
+ +N PV+A K +R+ ++ G L LM+
Sbjct: 316 NAENQFANCPVVAFKKSRLGDYGGRSLSGGSPTVNPQIPQTNQLMQWWGSNGNKSQSRSL 375
Query: 655 -------------------EIQDQQLGMGDKADYCSVRGIIQVFR-----GSNTTYKACP 690
I+++ LG DK D+ S + I + Y AC
Sbjct: 376 SSSGGGKGPDPLEKRKDVCSIKEEHLGNSDKPDWLSFKATITFLKREKQGDDGAWYTACA 435
Query: 691 S--QDCNK--KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAES 746
+ + C K ++G Y C+KC + R I + D T++ W+++F +AE+
Sbjct: 436 NSGEPCRNMFKATQTSDGNYHCDKCQQTHPNCVRRFIFSGTVADDTSTSWISMFNEQAET 495
Query: 747 IL-GVTAQ-------EVGESTEDHPALKKALFTQYIFRLRAKLE 782
+ G+TA E G+ KA +T+++F+ + K E
Sbjct: 496 LFNGMTADNLYQQSIEQGDKDFYDSTFLKATYTEWVFKCKVKQE 539
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/356 (24%), Positives = 161/356 (45%), Gaps = 51/356 (14%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN +++ + +E++F ++ + + D G Y FV + + + P+ +D+L V
Sbjct: 215 ANMAYNNCKSQFEITFDQNSEI---HLDAEGAEIRENYDFVKIAELENMEPNSYVDILAV 271
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA--SNKPVIAVKA 123
++S++ K + K K D+ + D S A V +TLWG A+ + +N PV+A K
Sbjct: 272 VKHVGDVSTIVSKKSGKEMTKVDLVVEDDSGADVKLTLWGNSAQNAENQFANCPVVAFKK 331
Query: 124 ARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRF-------------EPV 170
+R+ ++ GG++LS +V NP IP+ ++L W+ + N +P+
Sbjct: 332 SRLGDY-GGRSLSGGSPTV---NPQIPQTNQLMQWWGSNGNKSQSRSLSSSGGGKGPDPL 387
Query: 171 SQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFR-----GSNTTYKACP 225
+R + I+++ LG DK D+ S + I + Y AC
Sbjct: 388 EKRKD------------VCSIKEEHLGNSDKPDWLSFKATITFLKREKQGDDGAWYTACA 435
Query: 226 S--QDCNK--KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAES 281
+ + C K ++G Y C+KC + R I + D T++ W+++F +AE+
Sbjct: 436 NSGEPCRNMFKATQTSDGNYHCDKCQQTHPNCVRRFIFSGTVADDTSTSWISMFNEQAET 495
Query: 282 IL-GVTAQ-------EVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDGV 329
+ G+TA E G+ KA +T+++F+ + K E +I V
Sbjct: 496 LFNGMTADNLYQQSIEQGDKDFYDSTFLKATYTEWVFKCKVKQEMVGDETRIKTSV 551
>gi|115461691|ref|NP_001054445.1| Os05g0111000 [Oryza sativa Japonica Group]
gi|52353639|gb|AAU44205.1| unknown protein [Oryza sativa Japonica Group]
gi|113577996|dbj|BAF16359.1| Os05g0111000 [Oryza sativa Japonica Group]
gi|222629944|gb|EEE62076.1| hypothetical protein OsJ_16860 [Oryza sativa Japonica Group]
Length = 951
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 130/413 (31%), Positives = 203/413 (49%), Gaps = 72/413 (17%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNR 502
PI +L+PYQ KWTIKARVT K+ IR W+NAR SG +FS DLLD + GEIRA + + ++
Sbjct: 309 PITALNPYQPKWTIKARVTAKSDIRHWSNARSSGTVFSFDLLDAQGGEIRAQCWKESADK 368
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F IE +VY IS +LKPA KK++++N+DYE++ + + D+ ++P ++Y F
Sbjct: 369 FFGQIEVGRVYLISRGSLKPAQKKYNTLNHDYEITLDIGLSTVEVCSDDDNSIPRLQYNF 428
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
+ + ++ + +D+LGV + +++ K +T KR I L D S S+ +TLWG
Sbjct: 429 RQISELENMANETIVDLLGVVTSVSPSATIMRKIGTET-RKRSIQLKDLSGRSIEVTLWG 487
Query: 623 K--EAE------TFDASNKPVIAVKAARVSEFQGN------------------------- 649
+AE D+ + P+IA K ARV +F G
Sbjct: 488 NFCDAEGQQLQLQCDSGSNPIIAFKGARVGDFNGKSVSTIGSTQLIINPDFPEVERLRQW 547
Query: 650 ----------LLLMRE---------------IQDQQLGMGDKADYCSVRGIIQVFRGSNT 684
+ L RE I+D+ LG +K D+ +V+ I +
Sbjct: 548 YMTEGKTAPCISLSREMLNMGRTDARKTIAQIKDENLGRLEKPDWITVKAAISHVTTESF 607
Query: 685 TYKACP-----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTL 739
Y ACP + CNKK I+ +GM+ C++C++ F YR +L I D T S + +
Sbjct: 608 CYPACPKLLPVGRQCNKKAINNGDGMWHCDRCDESFQNPEYRYMLRFQIQDHTGSTYASA 667
Query: 740 FQNEAESILGVTAQEV-------GESTEDHPALKKALFTQYIFRLRAKLEHYN 785
F E I G A E+ + + ++ + Y+F+L+ K E YN
Sbjct: 668 FDEAGEQIFGRKAGELFSIRNVDQDDAQFAEIIEGVRWHLYLFKLKVKEETYN 720
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/339 (29%), Positives = 173/339 (51%), Gaps = 29/339 (8%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA KK++++N+DYE++ + + D+ ++P ++Y F + + ++ + +D+LG
Sbjct: 388 PAQKKYNTLNHDYEITLDIGLSTVEVCSDDDNSIPRLQYNFRQISELENMANETIVDLLG 447
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK--EAE------TFDASNK 116
V + +++ K +T KR I L D S S+ +TLWG +AE D+ +
Sbjct: 448 VVTSVSPSATIMRKIGTET-RKRSIQLKDLSGRSIEVTLWGNFCDAEGQQLQLQCDSGSN 506
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEP---VSQR 173
P+IA K ARV +F G K++S S+ L +NPD PE +L+ W+ T+ T P +S+
Sbjct: 507 PIIAFKGARVGDFNG-KSVSTIGSTQLIINPDFPEVERLRQWYMTEGKT--APCISLSRE 563
Query: 174 TGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP-----SQD 228
MG A + +I+D+ LG +K D+ +V+ I + Y ACP +
Sbjct: 564 MLNMGRTDARKTIA--QIKDENLGRLEKPDWITVKAAISHVTTESFCYPACPKLLPVGRQ 621
Query: 229 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 288
CNKK I+ +GM+ C++C++ F YR +L I D T S + + F E I G A
Sbjct: 622 CNKKAINNGDGMWHCDRCDESFQNPEYRYMLRFQIQDHTGSTYASAFDEAGEQIFGRKAG 681
Query: 289 EV-------GESTEDHPALKKALFTQYIFRLRAKLEHYN 320
E+ + + ++ + Y+F+L+ K E YN
Sbjct: 682 ELFSIRNVDQDDAQFAEIIEGVRWHLYLFKLKVKEETYN 720
Score = 39.3 bits (90), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGVN +MLAT LN ++ D TL T+VQ+ ++ + + + ++I+++L++
Sbjct: 54 LSDGVNTQQ-SMLATALNPLVKDATLRPGTVVQLTDFMCNTIQG-----KRIIIVVKLDV 107
Query: 385 IKPGTEIGFKIGNP---QPLNTNTDNSSTQQTPAATNTNGS 422
++ + IGNP +P + + Q A NG+
Sbjct: 108 LQNDCIV---IGNPKHYEPKSLTKEQDPNLQASVAQTNNGT 145
>gi|302759481|ref|XP_002963163.1| hypothetical protein SELMODRAFT_141493 [Selaginella moellendorffii]
gi|300168431|gb|EFJ35034.1| hypothetical protein SELMODRAFT_141493 [Selaginella moellendorffii]
Length = 566
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 133/421 (31%), Positives = 211/421 (50%), Gaps = 80/421 (19%)
Query: 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDE 499
+ +P+VSL+PYQ WTIK RVT+K P+R + NARG G +F+++L DE G +I+ATMF +
Sbjct: 115 RVYPLVSLTPYQGSWTIKVRVTSKGPLRTYRNARGEGSVFNVELTDEDGTQIQATMFKEA 174
Query: 500 CNRFHDMIEKDK-------VYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDE- 551
+F+ M E K VYY+SN L+ AN++FS++ NDYEM+ S+ V E +
Sbjct: 175 AEKFYPMFELGKATSFLYQVYYVSNGNLRMANRRFSAVKNDYEMTLNASSGVEEVTEPDG 234
Query: 552 -VGNMPSVKYCFVPLKTIAE-ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLV 609
G +P VKY FV ++ +A ++ E D +G+ + SV K + + KR+I LV
Sbjct: 235 KPGVIPLVKYNFVKIEDLAAYVNKRELFDAIGIVQSVSSTMSVRRKVDNTEFAKREIVLV 294
Query: 610 DQSQASVTMTLWGKEAETFDAS------NKPVIAVKAARVSEFQGNLLL----------- 652
DQSQ +V ++LW A A + PV+ +++ R ++FQ + L
Sbjct: 295 DQSQKTVAVSLWSSLAVEDGAKLLEMLPDAPVVVIRSVRANDFQAGVSLSTSPNSMVWIN 354
Query: 653 -----MREIQ---------------------------DQQLGMGD---------KADYCS 671
RE++ D + + D KA Y +
Sbjct: 355 PDIPEARELRSWYDESGKDATLTSVGAGLSQRAGPTNDNRADISDITAPSVGEGKAAYFT 414
Query: 672 VRGIIQVFRGSNTT-YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGD 730
VR I + T Y AC + CN+KV +++ + CE C + F+T + R I+ + D
Sbjct: 415 VRACISYIKPDQTMWYTACST--CNRKV-SEDSSRFWCEACQRHFDTASRRYIMLAKLTD 471
Query: 731 WTNSVWVTLFQNEAESILGVTAQEVG--ESTED-----HPALKKALFTQYIFRLRAKLEH 783
+ WV+ F ++AE ILGV+A E+ +S +D L K +++ Y+FR+
Sbjct: 472 HSGDAWVSFFNDQAEQILGVSADELATIKSQDDDQRQYSSQLSKVVWSSYVFRVSVAQTE 531
Query: 784 Y 784
Y
Sbjct: 532 Y 532
Score = 169 bits (427), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 176/337 (52%), Gaps = 22/337 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDE--VGNMPSVKYCFVPLKTIAE-ISPDENIDV 62
AN++FS++ NDYEM+ S+ V E + G +P VKY FV ++ +A ++ E D
Sbjct: 205 ANRRFSAVKNDYEMTLNASSGVEEVTEPDGKPGVIPLVKYNFVKIEDLAAYVNKRELFDA 264
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS------NK 116
+G+ + SV K + + KR+I LVDQSQ +V ++LW A A +
Sbjct: 265 IGIVQSVSSTMSVRRKVDNTEFAKREIVLVDQSQKTVAVSLWSSLAVEDGAKLLEMLPDA 324
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTG 175
PV+ +++ R ++FQ G +LS S +S++ +NPDIPE +L+ W+ + + V
Sbjct: 325 PVVVIRSVRANDFQAGVSLSTSPNSMVWINPDIPEARELRSWYDESGKDATLTSVGAGLS 384
Query: 176 GMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDCNKKVI 234
G N + +I +G G KA Y +VR I + T Y AC + CN+KV
Sbjct: 385 QRAGPTNDNRADISDITAPSVGEG-KAAYFTVRACISYIKPDQTMWYTACST--CNRKV- 440
Query: 235 DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG--E 292
+++ + CE C + F+T + R I+ + D + WV+ F ++AE ILGV+A E+ +
Sbjct: 441 SEDSSRFWCEACQRHFDTASRRYIMLAKLTDHSGDAWVSFFNDQAEQILGVSADELATIK 500
Query: 293 STED-----HPALKKALFTQYIFRLRAKLEHYNGTKK 324
S +D L K +++ Y+FR+ Y G K+
Sbjct: 501 SQDDDQRQYSSQLSKVVWSSYVFRVSVAQTEYLGEKR 537
>gi|302799733|ref|XP_002981625.1| hypothetical protein SELMODRAFT_114787 [Selaginella moellendorffii]
gi|300150791|gb|EFJ17440.1| hypothetical protein SELMODRAFT_114787 [Selaginella moellendorffii]
Length = 566
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 133/421 (31%), Positives = 211/421 (50%), Gaps = 80/421 (19%)
Query: 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDE 499
+ +P+VSL+PYQ WTIK RVT+K P+R + NARG G +F+++L DE G +I+ATMF +
Sbjct: 115 RVYPLVSLTPYQGSWTIKVRVTSKGPLRTYRNARGEGSVFNVELTDEDGTQIQATMFKEA 174
Query: 500 CNRFHDMIEKDK-------VYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDE- 551
+F+ M E K VYY+SN L+ AN++FS++ NDYEM+ S+ V E +
Sbjct: 175 AEKFYPMFELGKATSFLYQVYYVSNGNLRMANRQFSAVKNDYEMTLNASSGVEEVTEPDG 234
Query: 552 -VGNMPSVKYCFVPLKTIAE-ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLV 609
G +P VKY FV ++ +A ++ E D +G+ + SV K + + KR+I LV
Sbjct: 235 KPGVIPLVKYNFVKIEDLAAYVNKRELFDAIGIVQSVSSTMSVRRKVDNTEFAKREIVLV 294
Query: 610 DQSQASVTMTLWGKEAETFDAS------NKPVIAVKAARVSEFQGNLLL----------- 652
DQSQ +V ++LW A A + PV+ +++ R ++FQ + L
Sbjct: 295 DQSQKTVAVSLWSSLAVEDGAKLLEMLPDAPVVVIRSVRANDFQAGVSLSTSPNSMVWIN 354
Query: 653 -----MREIQ---------------------------DQQLGMGD---------KADYCS 671
RE++ D + + D KA Y +
Sbjct: 355 PDIPEARELRSWYDESGKDATLTSVGAGLSQRAGSANDNRADISDITAPSVGEGKAAYFT 414
Query: 672 VRGIIQVFRGSNTT-YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGD 730
VR I + T Y AC + CN+KV +++ + CE C + F+T + R I+ + D
Sbjct: 415 VRACISYIKPDQTMWYTACST--CNRKV-SEDSSRFWCEACQRHFDTASRRYIMLAKLTD 471
Query: 731 WTNSVWVTLFQNEAESILGVTAQEVG--ESTED-----HPALKKALFTQYIFRLRAKLEH 783
+ WV+ F ++AE ILGV+A E+ +S +D L K +++ Y+FR+
Sbjct: 472 HSGDAWVSFFNDQAEQILGVSADELATIKSQDDDQRQYSSQLSKVVWSSYVFRVSVAQTE 531
Query: 784 Y 784
Y
Sbjct: 532 Y 532
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/337 (32%), Positives = 177/337 (52%), Gaps = 22/337 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDE--VGNMPSVKYCFVPLKTIAE-ISPDENIDV 62
AN++FS++ NDYEM+ S+ V E + G +P VKY FV ++ +A ++ E D
Sbjct: 205 ANRQFSAVKNDYEMTLNASSGVEEVTEPDGKPGVIPLVKYNFVKIEDLAAYVNKRELFDA 264
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS------NK 116
+G+ + SV K + + KR+I LVDQSQ +V ++LW A A +
Sbjct: 265 IGIVQSVSSTMSVRRKVDNTEFAKREIVLVDQSQKTVAVSLWSSLAVEDGAKLLEMLPDA 324
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTG 175
PV+ +++ R ++FQ G +LS S +S++ +NPDIPE +L+ W+ + + V
Sbjct: 325 PVVVIRSVRANDFQAGVSLSTSPNSMVWINPDIPEARELRSWYDESGKDATLTSVGAGLS 384
Query: 176 GMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDCNKKVI 234
G A N + +I +G G KA Y +VR I + T Y AC + CN+KV
Sbjct: 385 QRAGSANDNRADISDITAPSVGEG-KAAYFTVRACISYIKPDQTMWYTACST--CNRKV- 440
Query: 235 DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG--E 292
+++ + CE C + F+T + R I+ + D + WV+ F ++AE ILGV+A E+ +
Sbjct: 441 SEDSSRFWCEACQRHFDTASRRYIMLAKLTDHSGDAWVSFFNDQAEQILGVSADELATIK 500
Query: 293 STED-----HPALKKALFTQYIFRLRAKLEHYNGTKK 324
S +D L K +++ Y+FR+ Y G K+
Sbjct: 501 SQDDDQRQYSSQLSKVVWSSYVFRVSVAQTEYLGEKR 537
>gi|224130162|ref|XP_002328669.1| predicted protein [Populus trichocarpa]
gi|222838845|gb|EEE77196.1| predicted protein [Populus trichocarpa]
Length = 603
Score = 206 bits (525), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 153/529 (28%), Positives = 243/529 (45%), Gaps = 97/529 (18%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
A+ +++L+ I G + ++++ Y V+ + S S LII + ++ P E K
Sbjct: 59 AIFSSRLSSEILSGNIQNLCLIRVLDYTVNEIPSKS---EKFLIITKCEVVSPALEKEIK 115
Query: 395 ------IGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSL 448
I P+ Q+ A + + H N+A P A + HP+VSL
Sbjct: 116 EEAKGLILKPK-----------QEIVAKSAAQIVHEQHGNMA-PAARMAMTRRVHPLVSL 163
Query: 449 SPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNRFHDMI 507
+PYQ WTIK RVT+K +R + NARG G +F+++L D G +I+ATMFN+ +F+D
Sbjct: 164 NPYQGNWTIKVRVTSKGNMRTYRNARGEGCVFNVELTDGDGTQIQATMFNEAAKKFYDRF 223
Query: 508 EKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKT 567
E KVYYIS TL+ ANK+F ++ NDYEM+ ++ V + DE +P K+ FVP+
Sbjct: 224 ELGKVYYISKGTLRVANKQFKTVQNDYEMTLNENSEVEEAS-DEAACIPETKFKFVPIDQ 282
Query: 568 IAE-ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA- 625
+ ++ + +DV+G+ + +S+ K+N +T KRDI + D+++ +V ++LW + A
Sbjct: 283 LGPYVNSKDLVDVIGIVQSVSPTTSIRRKSNNETVPKRDIVVADETKKTVVVSLWNELAT 342
Query: 626 ----ETFDASNK------------------------------PVIA-------------- 637
E D ++K PVIA
Sbjct: 343 SVGQELHDIADKSPVVAIKSLKVGDFQGISLSTLGKSIVQVNPVIAESEKLRNWYDSEGK 402
Query: 638 --------------VKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSN 683
K+ S + + L + LG DK + S+R I +
Sbjct: 403 ETSMASVGSGLSPSTKSGARSMYSDRVSLSHITSNPSLGE-DKPAFFSIRAYISFIKPDQ 461
Query: 684 TT-YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQN 742
T Y+AC + CNKKV D G Y CE C K + R I+ V + D + WV+ F
Sbjct: 462 TMWYRAC--KTCNKKVTDALGGGYWCEGCQKNDAECSLRYIMVVKVSDGSGEGWVSAFNE 519
Query: 743 EAESILGVTAQEVG------ESTEDHPALKKALFTQYIFRLRAKLEHYN 785
EAE I+G +A E+ E LK+A + ++ R+ YN
Sbjct: 520 EAEKIIGCSADELDLLKSQIEENTYQQRLKEATWNPHLLRISVSQNEYN 568
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 172/341 (50%), Gaps = 29/341 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE-ISPDENIDVLG 64
ANK+F ++ NDYEM+ ++ V + DE +P K+ FVP+ + ++ + +DV+G
Sbjct: 239 ANKQFKTVQNDYEMTLNENSEVEEAS-DEAACIPETKFKFVPIDQLGPYVNSKDLVDVIG 297
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ETFDASNK-PV 118
+ + +S+ K+N +T KRDI + D+++ +V ++LW + A E D ++K PV
Sbjct: 298 IVQSVSPTTSIRRKSNNETVPKRDIVVADETKKTVVVSLWNELATSVGQELHDIADKSPV 357
Query: 119 IAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ--------TNTRFEPV 170
+A+K+ +V +FQG +LS S++ +NP I E KL+ W+ ++ + P
Sbjct: 358 VAIKSLKVGDFQG-ISLSTLGKSIVQVNPVIAESEKLRNWYDSEGKETSMASVGSGLSPS 416
Query: 171 SQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDC 229
++ G + + L + LG DK + S+R I + T Y+AC + C
Sbjct: 417 TK--SGARSMYSDRVSLSHITSNPSLGE-DKPAFFSIRAYISFIKPDQTMWYRAC--KTC 471
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
NKKV D G Y CE C K + R I+ V + D + WV+ F EAE I+G +A E
Sbjct: 472 NKKVTDALGGGYWCEGCQKNDAECSLRYIMVVKVSDGSGEGWVSAFNEEAEKIIGCSADE 531
Query: 290 VG------ESTEDHPALKKALFTQYIFRLRAKLEHYNGTKK 324
+ E LK+A + ++ R+ YN K+
Sbjct: 532 LDLLKSQIEENTYQQRLKEATWNPHLLRISVSQNEYNNEKR 572
>gi|325187250|emb|CCA21790.1| replication protein A 70 kDa DNAbinding subunit puta [Albugo
laibachii Nc14]
Length = 612
Score = 206 bits (524), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 130/356 (36%), Positives = 195/356 (54%), Gaps = 44/356 (12%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG + S MLATQL ++ + +L E +VQ+K Y+ + V R +LI+L L
Sbjct: 38 LSDGTSFIS-GMLATQLVPLMQNESLKENFVVQLKDYLGNDVQG-----RRILIVLSLGE 91
Query: 385 IKPGTEIGFKIGNPQPLNT-NTDNSST-----------------------QQTPAATNTN 420
IKP E +IGNPQ + + N +ST Q T+
Sbjct: 92 IKPAYE---RIGNPQSIESINAGRASTPSLGVPVPKPLSIPSPSVQSLSINQLTRTEMTS 148
Query: 421 GSNGVHNNVAIPRQASA-----PVVQTHPIVSLSPYQN-KWTIKARVTNKTPIREWNNAR 474
++ V +I + P ++ I SL+PY +WTIKARVTN+ PI+ W NAR
Sbjct: 149 STHAVDGQSSISNHKGSVVREDPNIRLSDIQSLNPYAGGRWTIKARVTNRAPIKNWTNAR 208
Query: 475 GSGKLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINND 533
G GKLFSIDLLD + GEIRATMFND ++F+D++ +V+Y S ++ AN+KFSS+NND
Sbjct: 209 GQGKLFSIDLLDSKGGEIRATMFNDAVDKFYDVLRPGQVFYFSGGKIRMANRKFSSVNND 268
Query: 534 YEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVT 593
YE++F + + ++D + + Y F + T+ ++ D NIDV+GV +S +
Sbjct: 269 YEITFDQHSEISLASDDR--GIQQMNYNFKKIGTLEKLPADANIDVIGVVKQVEPMSEII 326
Query: 594 GKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-ETFDASNKPVIAVKAARVSEFQG 648
K ++ + KRD+ LVD S A V +TLW + A E + V+A+K R+SE+ G
Sbjct: 327 SKAGKQLF-KRDLVLVDDSMAEVRVTLWNERAQEDCSSWTNNVLAIKGCRISEYNG 381
Score = 175 bits (444), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 175/332 (52%), Gaps = 18/332 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN+KFSS+NNDYE++F + + ++D + + Y F + T+ ++ D NIDV+GV
Sbjct: 258 ANRKFSSVNNDYEITFDQHSEISLASDDR--GIQQMNYNFKKIGTLEKLPADANIDVIGV 315
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-ETFDASNKPVIAVKAA 124
+S + K ++ + KRD+ LVD S A V +TLW + A E + V+A+K
Sbjct: 316 VKQVEPMSEIISKAGKQLF-KRDLVLVDDSMAEVRVTLWNERAQEDCSSWTNNVLAIKGC 374
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF----STQTNTRFEPVSQRTGGMGGG 180
R+SE+ G +LS SS ++NP IPE L W+ ST T S GG G
Sbjct: 375 RISEYNGRSIGTLSSSS-FNVNPTIPEAGFLLSWYNNGGSTSETTSLSVGSSGFGGGSLG 433
Query: 181 AAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFR-GSNTTYKACPSQDCNKKVIDQNNG 239
+ + +I+ +QLG K DY +V+G + + S Y+AC CNKKVI
Sbjct: 434 SFAERANLMDIKARQLGFDQKPDYITVKGTVNYIKHDSGLYYQACTK--CNKKVIADVAQ 491
Query: 240 MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILG-VTAQEVGESTEDHP 298
Y CEKC + T R I+ ++I D T S WVT F ++ IL TA E+ E + +
Sbjct: 492 NYSCEKCQTVYKTCENRYIMSLVIADHTGSSWVTCFNDQGRVILNKRTADEIAEIKDTNT 551
Query: 299 AL-----KKALFTQYIFRLRAKLEHYNGTKKI 325
AL K+ALF Y++RLR K E+ G ++
Sbjct: 552 ALFEAVFKEALFKSYVWRLRIKAENVQGESRV 583
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 75/138 (54%), Gaps = 9/138 (6%)
Query: 653 MREIQDQQLGMGDKADYCSVRGIIQVFR-GSNTTYKACPSQDCNKKVIDQNNGMYRCEKC 711
+ +I+ +QLG K DY +V+G + + S Y+AC CNKKVI Y CEKC
Sbjct: 441 LMDIKARQLGFDQKPDYITVKGTVNYIKHDSGLYYQACTK--CNKKVIADVAQNYSCEKC 498
Query: 712 NKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILG-VTAQEVGESTEDHPAL----- 765
+ T R I+ ++I D T S WVT F ++ IL TA E+ E + + AL
Sbjct: 499 QTVYKTCENRYIMSLVIADHTGSSWVTCFNDQGRVILNKRTADEIAEIKDTNTALFEAVF 558
Query: 766 KKALFTQYIFRLRAKLEH 783
K+ALF Y++RLR K E+
Sbjct: 559 KEALFKSYVWRLRIKAEN 576
>gi|260793787|ref|XP_002591892.1| hypothetical protein BRAFLDRAFT_89409 [Branchiostoma floridae]
gi|229277104|gb|EEN47903.1| hypothetical protein BRAFLDRAFT_89409 [Branchiostoma floridae]
Length = 256
Score = 206 bits (523), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 117/263 (44%), Positives = 163/263 (61%), Gaps = 34/263 (12%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNII-KPGTEIGFK 394
MLATQ N ++ L + ++++++YI + + NR VLI+LE+ ++ PG K
Sbjct: 1 MLATQQNSLVHSQKLQQNCVIRLEKYICNTIQD----NRRVLIMLEVQVLGNPGN----K 52
Query: 395 IGNPQPLNT---NTDNSSTQQTPAATNTNGS---NGVHNNVAIPRQASAPVV-------- 440
I NP P+N T + Q AA NG +G A P Q +A
Sbjct: 53 IKNPTPVNQTGGGTAPAPVQNGGAAHAVNGGMNRSGNPGAGARPNQGAAGSSFYGRSNVT 112
Query: 441 ---------QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEI 491
+ PI L+PYQN+WTI+ARVTNK IR WNNARG GKLFS+DLLDESGEI
Sbjct: 113 ASPGTPGRGKPTPIAGLNPYQNRWTIRARVTNKGSIRTWNNARGEGKLFSMDLLDESGEI 172
Query: 492 RATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDE 551
RAT FND+C++F+D+IE KVY+ S +LK ANK+++SI NDYEMSF + TTV+ C EDE
Sbjct: 173 RATAFNDQCDKFYDLIEIGKVYFFSKGSLKTANKQYTSIQNDYEMSFNNDTTVVLC-EDE 231
Query: 552 VGNMPSVKYCFVPLKTIAEISPD 574
++PS++Y FVP++ + E++P+
Sbjct: 232 A-DLPSIQYNFVPIEKLEEMNPN 253
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 42/52 (80%), Gaps = 2/52 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPD 57
ANK+++SI NDYEMSF + TTV+ C EDE ++PS++Y FVP++ + E++P+
Sbjct: 204 ANKQYTSIQNDYEMSFNNDTTVVLC-EDEA-DLPSIQYNFVPIEKLEEMNPN 253
>gi|354507912|ref|XP_003515998.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Cricetulus griseus]
Length = 218
Score = 205 bits (521), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 96/197 (48%), Positives = 141/197 (71%), Gaps = 2/197 (1%)
Query: 455 WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYY 514
WTI ARVTNK+ IR W+N+RG GKLFSI+L+DESGEIRAT FN++ ++F +IE +KVYY
Sbjct: 1 WTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIRATAFNEQVDKFFPLIEVNKVYY 60
Query: 515 ISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPD 574
S TLK ANK+FS++ NDYEM+F + T+V+PC + ++P+V++ F + + S D
Sbjct: 61 FSKGTLKIANKQFSAVKNDYEMTFNNETSVLPCEDGH--HLPTVQFDFTGISDLESKSKD 118
Query: 575 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKP 634
+D++G+C + + +T K++ + KR+I L+D S VT TLWG++A+ FD S +P
Sbjct: 119 SLVDIIGICKSYEDSTKITVKSSNREVAKRNIYLMDMSGKVVTATLWGEDADKFDGSRQP 178
Query: 635 VIAVKAARVSEFQGNLL 651
V+A+K ARVS+F G L
Sbjct: 179 VMAIKGARVSDFGGRSL 195
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 107/153 (69%), Gaps = 3/153 (1%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+FS++ NDYEM+F + T+V+PC + ++P+V++ F + + S D +D++G+
Sbjct: 69 ANKQFSAVKNDYEMTFNNETSVLPCEDGH--HLPTVQFDFTGISDLESKSKDSLVDIIGI 126
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T K++ + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 127 CKSYEDSTKITVKSSNREVAKRNIYLMDMSGKVVTATLWGEDADKFDGSRQPVMAIKGAR 186
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGW 158
VS+F GG++LS+ SS + +NPDIPE +KL+GW
Sbjct: 187 VSDF-GGRSLSVLSSSTIIVNPDIPEAYKLRGW 218
>gi|300708826|ref|XP_002996585.1| hypothetical protein NCER_100307 [Nosema ceranae BRL01]
gi|239605898|gb|EEQ82914.1| hypothetical protein NCER_100307 [Nosema ceranae BRL01]
Length = 573
Score = 204 bits (520), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 152/546 (27%), Positives = 268/546 (49%), Gaps = 84/546 (15%)
Query: 296 DHPALKKALFTQYIFRLRAKLEHYNGTK-----KIPDGVNINSFAMLATQLNDIITDGTL 350
+HP K + + + K+ H G K + DG++ A+ ++L ++ +
Sbjct: 20 EHPLFNKPVLQVLMCQ---KVNHKEGEKLRYRAYLSDGLHYIR-AVFGSELTPLLETNQI 75
Query: 351 SEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTE-IGFKIGNPQPL-------- 401
++++V++ +I + G+A + I L G E +IGNP P+
Sbjct: 76 EKYSLVKLDSFIFRLIK-GNA----YIYIYSL----AGYENCNVEIGNPTPIYSDGSNRT 126
Query: 402 NTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARV 461
+TN + +TP + S V N +Q P T I S++P+ NKW IK R+
Sbjct: 127 DTNKQKVNEDETPKKSKVAKS--VEN-----KQTEDPNKYTQ-INSINPFCNKWIIKGRI 178
Query: 462 TNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLK 521
K+ IR+++N +G GKLFS ++ D+SG+I+ F++ + F+ +IE +VY I +K
Sbjct: 179 VLKSDIRKFSNKKGEGKLFSFEIADDSGQIKVVAFSESVDIFYPIIEIGRVYTIQKGEIK 238
Query: 522 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 581
+ K FS+ NNDYE+ ++ + ++E P + FV +K I S + ID++G
Sbjct: 239 MSKKTFSNNNNDYEIQLDVNSEIKKVEDNET---PKFFFNFVKIKDIT--SSNAPIDIVG 293
Query: 582 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 641
+ +A E S K QK ++R+ITL+D++ S+ T WG +AE + V+A+K+
Sbjct: 294 IVKEAGEAVSFIVKATQKESLRRNITLIDET-GSIRATFWGAKAEE-EIEVDSVLAIKSI 351
Query: 642 RVSEFQGNLL------------------------------LMREIQDQQLGMGDKAD--- 668
+VS+F G L + ++ ++ L + + +D
Sbjct: 352 KVSDFGGVSLSSIHTSQIHKNPDISESHSLLGWYNTEGKNVKIDLPERDLKIFNISDVKN 411
Query: 669 ----YCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLIL 724
Y +VR + + N Y +C ++C KKV G YRCEKC+K T+R ++
Sbjct: 412 QEMPYSAVRATLMFIKEDNLMYDSCKEENCTKKVYKNEFGEYRCEKCDKNSYECTHRYLI 471
Query: 725 PVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----ALKKALFTQYIFRLRA 779
I D T +W TLF ++A +LG++A + E ++ P +KK L+ +YI +LR+
Sbjct: 472 HANISDSTGQLWATLFNDQAILLLGMSASDFREMADNDPNQSQMFIKKFLYREYIIKLRS 531
Query: 780 KLEHYN 785
+ ++YN
Sbjct: 532 RQDNYN 537
Score = 165 bits (418), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 101/329 (30%), Positives = 175/329 (53%), Gaps = 27/329 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
+ K FS+ NNDYE+ ++ + ++E P + FV +K I S + ID++G+
Sbjct: 240 SKKTFSNNNNDYEIQLDVNSEIKKVEDNET---PKFFFNFVKIKDIT--SSNAPIDIVGI 294
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+A E S K QK ++R+ITL+D++ S+ T WG +AE + V+A+K+ +
Sbjct: 295 VKEAGEAVSFIVKATQKESLRRNITLIDET-GSIRATFWGAKAEE-EIEVDSVLAIKSIK 352
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
VS+F GG +LS +S + NPDI E H L GW++T+ + +R +
Sbjct: 353 VSDF-GGVSLSSIHTSQIHKNPDISESHSLLGWYNTEGKNVKIDLPERDL--------KI 403
Query: 186 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 245
+ ++++Q++ Y +VR + + N Y +C ++C KKV G YRCEK
Sbjct: 404 FNISDVKNQEMP------YSAVRATLMFIKEDNLMYDSCKEENCTKKVYKNEFGEYRCEK 457
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----AL 300
C+K T+R ++ I D T +W TLF ++A +LG++A + E ++ P +
Sbjct: 458 CDKNSYECTHRYLIHANISDSTGQLWATLFNDQAILLLGMSASDFREMADNDPNQSQMFI 517
Query: 301 KKALFTQYIFRLRAKLEHYNGTKKIPDGV 329
KK L+ +YI +LR++ ++YN K+ +
Sbjct: 518 KKFLYREYIIKLRSRQDNYNDEIKMRHNI 546
>gi|353239748|emb|CCA71646.1| probable Replication factor-A protein 1 [Piriformospora indica DSM
11827]
Length = 611
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 160/532 (30%), Positives = 244/532 (45%), Gaps = 102/532 (19%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK-PGTEIGF 393
AM AT LN+ + DGT +V++ ++ + + +LI+ + I P +IG
Sbjct: 58 AMFATTLNEKVEDGTFRRNCVVKLTKWEPQDIKG-----QRILILFSMEAISYPEEKIGT 112
Query: 394 KIGNP----QPLNTNT---------------DNSSTQQTPAATNTNGSNGVHNNVAIPRQ 434
+ NP P N+++ D ++ PA + G +G NN
Sbjct: 113 PV-NPGKATAPGNSDSMAVDKSSNAPSTSSSDLVPSKPVPAPAASRGPSG--NN------ 163
Query: 435 ASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRAT 494
AP+ PI L+PY NKWTIKARVT K+ + W+N +G G+LFS++L+DE+GEI+AT
Sbjct: 164 --APIF---PIEGLNPYHNKWTIKARVTMKSERKRWSNNKGEGQLFSVNLMDETGEIKAT 218
Query: 495 MFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN 554
FN + +D E+ KVYYIS + A K FS++ DYE++ T V C + E
Sbjct: 219 AFNAAVDALYDRFEEGKVYYISKGRVVIAKKAFSNLTCDYEITMDSKTEVEECMDAEADK 278
Query: 555 MPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA 614
+P ++Y FV LK + E D ++DV+ V EL S+ K K KRD+ L D+S
Sbjct: 279 VPQIQYSFVSLKDLEEKPKDASVDVIAVVHSVGELGSINTKQG-KPLSKRDLVLADRSGY 337
Query: 615 SVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRG 674
S TLWGK+AE + ++ P++A K +VS+F G L + + + D + S+RG
Sbjct: 338 SCRCTLWGKQAEQWSHNDNPIVAFKGLKVSDFNGRSLSLNSSSTMHIDV-DMPETNSLRG 396
Query: 675 IIQV--FRGSNTTYKACP---------------------------SQD----CNKKV--- 698
Q +G+ T+ S+D N +
Sbjct: 397 WYQKEGHKGNFNTHGGGGAGAARGSSGFKREEMKTLLEVRESEMGSRDKPEFFNSRASIV 456
Query: 699 -IDQNNGMY---RCEKCNKEFNTF----------------TYRLILPVMIGDWTNSVWVT 738
I Q N Y E CNK+ N YR +L + + D T W+
Sbjct: 457 TIKQENIAYPACMAEGCNKKVNDTGNGWHCEKCDKTWPKPQYRYLLGIQVADHTAQAWLQ 516
Query: 739 LFQNEAESILGVTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKLEHYN 785
F + A I+G+ A ++ E ++ A + KA Y F RAK + YN
Sbjct: 517 AFNDVATEIIGMNADQLMEIKDNDEAEFQKVIHKAQSKTYNFECRAKNDTYN 568
Score = 185 bits (470), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 110/334 (32%), Positives = 176/334 (52%), Gaps = 13/334 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K FS++ DYE++ T V C + E +P ++Y FV LK + E D ++DV+ V
Sbjct: 247 AKKAFSNLTCDYEITMDSKTEVEECMDAEADKVPQIQYSFVSLKDLEEKPKDASVDVIAV 306
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
EL S+ K K KRD+ L D+S S TLWGK+AE + ++ P++A K +
Sbjct: 307 VHSVGELGSINTKQG-KPLSKRDLVLADRSGYSCRCTLWGKQAEQWSHNDNPIVAFKGLK 365
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQT-----NTRFEPVSQRTGGMGGG 180
VS+F G++LSL+ SS + ++ D+PE + L+GW+ + NT + G G
Sbjct: 366 VSDFN-GRSLSLNSSSTMHIDVDMPETNSLRGWYQKEGHKGNFNTHGGGGAGAARGSSGF 424
Query: 181 AAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGM 240
+ + E+++ ++G DK ++ + R I + N Y AC ++ CNKKV D NG
Sbjct: 425 KREEMKTLLEVRESEMGSRDKPEFFNSRASIVTIKQENIAYPACMAEGCNKKVNDTGNG- 483
Query: 241 YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA- 299
+ CEKC+K + YR +L + + D T W+ F + A I+G+ A ++ E ++ A
Sbjct: 484 WHCEKCDKTWPKPQYRYLLGIQVADHTAQAWLQAFNDVATEIIGMNADQLMEIKDNDEAE 543
Query: 300 ----LKKALFTQYIFRLRAKLEHYNGTKKIPDGV 329
+ KA Y F RAK + YN ++ GV
Sbjct: 544 FQKVIHKAQSKTYNFECRAKNDTYNDQTRVRYGV 577
>gi|402220694|gb|EJU00765.1| replication factor-a protein, partial [Dacryopinax sp. DJM-731 SS1]
Length = 493
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 135/474 (28%), Positives = 228/474 (48%), Gaps = 81/474 (17%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AMLA+Q N DG L++ I++ R+ S V +++++IIL ++++K E +
Sbjct: 12 AMLASQNNHFAIDGYLTKNCIIKATRFSRSKVQ-----DKTIIIILAMDVVKQEKE---R 63
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVS----LSP 450
+G PQ + + TP +T T+ N + A A ++ P ++ LSP
Sbjct: 64 LGMPQSILDEGPTFAQPATPTSTKTSTINKISAGAATKSFTKASGLKGEPTITPINQLSP 123
Query: 451 YQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKD 510
Y+N+WT+KAR+T K+ +R+W+N RGSG LF+ + DE+G I+AT F ++C+R IE+
Sbjct: 124 YRNQWTVKARITKKSDVRKWSNERGSGYLFNCTMTDETGSIKATAFMEQCDRLLKEIEEG 183
Query: 511 KVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE 570
KVYYIS + PA K +++ DYE++F ST V CN+D NMP + + L + +
Sbjct: 184 KVYYISKGKILPAKKIYNTTGCDYEITFNESTNVELCNDDS--NMPG-GFSYTVLANLGD 240
Query: 571 ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA 630
+S D+ + +GV + + I +VD S S +TLWGK AE FD
Sbjct: 241 LSKDDTCNAIGV---VRSRWRTWNNHEENSAPHAHIIIVDHSGFSCKVTLWGKVAEDFDV 297
Query: 631 SNKPVIAVKAARVSE-------FQGN---------------------------------- 649
++PVIA++ +V + FQG+
Sbjct: 298 KDQPVIALRHVKVGDYHGRDLNFQGDSSMTLNPDLKEAHFLRGWYDANGLTYKFQPCQGA 357
Query: 650 -------------LLLMREIQDQQLGMGDKADYCSVRGIIQVF-------RGSNTTYKAC 689
L+ + E++ + +G+ Y +V+ ++ R +Y AC
Sbjct: 358 SGSGESGLVNHSQLMTLEEVKSKNIGI-KTTSYFTVKLRVKATPRIKEENRHMPISYPAC 416
Query: 690 PSQDCNKKV-IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQN 742
S+DC K + D ++ + C KC+ F+ YR ++ + +GD S W ++ N
Sbjct: 417 RSEDCVKGLSYDDSDRKWHCAKCSGCFDAPEYRYLMRISLGDHMGSAWFNIYDN 470
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 144/287 (50%), Gaps = 25/287 (8%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K +++ DYE++F ST V CN+D NMP + + L + ++S D+ + +G
Sbjct: 195 PAKKIYNTTGCDYEITFNESTNVELCNDDS--NMPG-GFSYTVLANLGDLSKDDTCNAIG 251
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V + + I +VD S S +TLWGK AE FD ++PVIA++
Sbjct: 252 V---VRSRWRTWNNHEENSAPHAHIIIVDHSGFSCKVTLWGKVAEDFDVKDQPVIALRHV 308
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGMGGGAAG 183
+V ++ G+ L+ S ++LNPD+ E H L+GW+ T +F+P G G G +G
Sbjct: 309 KVGDYH-GRDLNFQGDSSMTLNPDLKEAHFLRGWYDANGLTYKFQPCQ---GASGSGESG 364
Query: 184 -----NLLLMREIQDQQLGMGDKADYCSVR-------GIIQVFRGSNTTYKACPSQDCNK 231
L+ + E++ + +G+ Y +V+ I + R +Y AC S+DC K
Sbjct: 365 LVNHSQLMTLEEVKSKNIGI-KTTSYFTVKLRVKATPRIKEENRHMPISYPACRSEDCVK 423
Query: 232 KV-IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQN 277
+ D ++ + C KC+ F+ YR ++ + +GD S W ++ N
Sbjct: 424 GLSYDDSDRKWHCAKCSGCFDAPEYRYLMRISLGDHMGSAWFNIYDN 470
>gi|219123923|ref|XP_002182265.1| replication protein a large 70 kD subunit [Phaeodactylum
tricornutum CCAP 1055/1]
gi|217406226|gb|EEC46166.1| replication protein a large 70 kD subunit [Phaeodactylum
tricornutum CCAP 1055/1]
Length = 606
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 152/544 (27%), Positives = 259/544 (47%), Gaps = 103/544 (18%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
MLATQLN +I + TIVQ+++++ S +R+V+I+L ++ ++ +
Sbjct: 44 GMLATQLNHMIATNLIGANTIVQVEQFM-----SNRVKDRTVIILLNVHALRNEPS---R 95
Query: 395 IGNPQPLN-----TNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTH-PIV-- 446
IG+PQ + T N +T + T N P AS PV +H PIV
Sbjct: 96 IGDPQDIEKAQIATPGTNYATGSSVPPVKTGSPNPYGGPSRNPHHAS-PVRSSHAPIVRD 154
Query: 447 -----------SLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATM 495
+L+ Y NKWTI+ARVT+K+ IR W+NA+G G LFS++LLD++ ++RAT
Sbjct: 155 TVNGTPITNISNLNMYANKWTIQARVTSKSDIRTWSNAKGEGSLFSVELLDQTQDVRATF 214
Query: 496 FNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNM 555
F + ++F+ ++ VY S LK AN ++++ +++E++F ++ + N+D GN+
Sbjct: 215 FKEAVDKFYSFLQIGSVYTFSGGRLKVANAQYNTCQSNFEITFDQNSEIHLANDD--GNI 272
Query: 556 PSVKYCFV-PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA 614
Y F+ + + P+ +D+L V E++++ K + + K D+TL+D S
Sbjct: 273 QRQHYEFIDSIAGLERTEPNTMVDLLAVVQAVGEVATIVSKKSGQELTKCDLTLIDTSAT 332
Query: 615 SVTMTLWGKEAETF--DASNKPVIAVKAARVSEFQGNLL--------------------- 651
+T+TLWG +A + D + +PV+A++ ARVS++ G L
Sbjct: 333 QITLTLWGDKAASALTDYNQQPVVAIRRARVSDYGGRSLSLSGSIETNPDIPQTAPLQTW 392
Query: 652 -----------------------LMREIQDQQ---------LG-MGDKADYCSVRGIIQV 678
+M ++ +Q LG GDK D+ + + +
Sbjct: 393 WRTQTANGGVTGKSLSATRGGAGVMESLEQRQTIADIKNNNLGYAGDKPDWLTFKATVSF 452
Query: 679 FRG---SNTTYKACPS--QDCNK--KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDW 731
+ + Y AC + + C KV +G + C+KC F T R I ++ D
Sbjct: 453 LKKDKEGGSWYPACANAGEPCKNRYKVTQTTDGNWYCDKCQGSFPTCVRRWIFSGVVEDD 512
Query: 732 TNSVWVTLFQNEAESIL-GVTAQEVGESTEDHPA--------LKKALFTQYIFRLRAKLE 782
T+S WV+ F +AE++L G TA +V T KA T++IF+ + K E
Sbjct: 513 TSSTWVSFFNEQAETLLAGATADQVYAETYQDQQDQDAYDSYFAKANHTEWIFKCKVKNE 572
Query: 783 HYNK 786
N+
Sbjct: 573 MVNE 576
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 106/372 (28%), Positives = 185/372 (49%), Gaps = 31/372 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV-PLKTIAEISPDENIDVLG 64
AN ++++ +++E++F ++ + N+D GN+ Y F+ + + P+ +D+L
Sbjct: 242 ANAQYNTCQSNFEITFDQNSEIHLANDD--GNIQRQHYEFIDSIAGLERTEPNTMVDLLA 299
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF--DASNKPVIAVK 122
V E++++ K + + K D+TL+D S +T+TLWG +A + D + +PV+A++
Sbjct: 300 VVQAVGEVATIVSKKSGQELTKCDLTLIDTSATQITLTLWGDKAASALTDYNQQPVVAIR 359
Query: 123 AARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAA 182
ARVS++ GG++LSLS S + NPDIP+ LQ W+ TQT + GG
Sbjct: 360 RARVSDY-GGRSLSLSGS--IETNPDIPQTAPLQTWWRTQTANGGVTGKSLSATRGGAGV 416
Query: 183 GNLLLMRE----IQDQQLG-MGDKADYCSVRGIIQVFRG---SNTTYKACPS--QDCNK- 231
L R+ I++ LG GDK D+ + + + + + Y AC + + C
Sbjct: 417 MESLEQRQTIADIKNNNLGYAGDKPDWLTFKATVSFLKKDKEGGSWYPACANAGEPCKNR 476
Query: 232 -KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL-GVTAQE 289
KV +G + C+KC F T R I ++ D T+S WV+ F +AE++L G TA +
Sbjct: 477 YKVTQTTDGNWYCDKCQGSFPTCVRRWIFSGVVEDDTSSTWVSFFNEQAETLLAGATADQ 536
Query: 290 VGESTEDHPA--------LKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQL 341
V T KA T++IF+ + K E N ++ V A +
Sbjct: 537 VYAETYQDQQDQDAYDSYFAKANHTEWIFKCKVKNEMVNEESRVKTSVVAMQPVDFAKES 596
Query: 342 NDIITDGTLSEF 353
D+++ L++F
Sbjct: 597 RDLLS--ALAKF 606
>gi|410075269|ref|XP_003955217.1| hypothetical protein KAFR_0A06470 [Kazachstania africana CBS 2517]
gi|372461799|emb|CCF56082.1| hypothetical protein KAFR_0A06470 [Kazachstania africana CBS 2517]
Length = 618
Score = 202 bits (515), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/335 (33%), Positives = 188/335 (56%), Gaps = 18/335 (5%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA +FS++++ YE+S T + C ++ N+P + F+ L +I + IDV+G
Sbjct: 259 PAKPQFSNLSHPYELSLDRDTQIEECFDE--SNVPKTHFNFIKLNSIQNQENNSTIDVIG 316
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+ +T + +K + +RDITLVD S S+ + LW ++A F+ V+A+K
Sbjct: 317 IIQTVGPHFELTSRAGKK-FDRRDITLVDDSNYSIPVGLWNQQAIDFNLPEGSVVAIKGV 375
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGG---MGGG 180
RVS+F GGKTLS+ +S L +PDI E + L+GW+ S N+ F + Q G + GG
Sbjct: 376 RVSDF-GGKTLSMGFTSTLVPSPDINEAYSLKGWYDSVGQNSNFTSLKQEADGSSSVNGG 434
Query: 181 AAGNLLLMREI-----QDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVID 235
+ + I Q+ LG ++ D+ SV+ + + N Y AC ++ CNKKV++
Sbjct: 435 ENATKFISQRITIARAQEDNLGRSERGDFFSVKAAVSFLKVDNFAYPACSNEGCNKKVLE 494
Query: 236 QNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE 295
Q++G +RCEKC+ + +R +L + I D TN +W+TLF ++AE +LG +A ++ E E
Sbjct: 495 QSDGTWRCEKCDINNPSPRWRYVLTISIMDETNQLWLTLFDDQAEQLLGTSANKLMELKE 554
Query: 296 DHP----ALKKAL-FTQYIFRLRAKLEHYNGTKKI 325
P + +A+ QY FR+RA+ ++YN +I
Sbjct: 555 TDPNQFTKVTQAIQMNQYDFRIRAREDNYNDQTRI 589
Score = 173 bits (438), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 134/220 (60%), Gaps = 6/220 (2%)
Query: 434 QASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRA 493
Q S P+ I LSPYQN WTIKARV+ K I+EWNN +GSGKLF+ + LD SGEIRA
Sbjct: 174 QKSKPIF---AIEQLSPYQNIWTIKARVSYKGEIKEWNNQKGSGKLFNANFLDTSGEIRA 230
Query: 494 TMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVG 553
T FN+ ++ +++++ KVYYIS L+PA +FS++++ YE+S T + C ++
Sbjct: 231 TAFNEWAVKYSEILQEGKVYYISKARLQPAKPQFSNLSHPYELSLDRDTQIEECFDE--S 288
Query: 554 NMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ 613
N+P + F+ L +I + IDV+G+ +T + +K + +RDITLVD S
Sbjct: 289 NVPKTHFNFIKLNSIQNQENNSTIDVIGIIQTVGPHFELTSRAGKK-FDRRDITLVDDSN 347
Query: 614 ASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM 653
S+ + LW ++A F+ V+A+K RVS+F G L M
Sbjct: 348 YSIPVGLWNQQAIDFNLPEGSVVAIKGVRVSDFGGKTLSM 387
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 88/148 (59%), Gaps = 5/148 (3%)
Query: 643 VSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQN 702
++F + + Q+ LG ++ D+ SV+ + + N Y AC ++ CNKKV++Q+
Sbjct: 437 ATKFISQRITIARAQEDNLGRSERGDFFSVKAAVSFLKVDNFAYPACSNEGCNKKVLEQS 496
Query: 703 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH 762
+G +RCEKC+ + +R +L + I D TN +W+TLF ++AE +LG +A ++ E E
Sbjct: 497 DGTWRCEKCDINNPSPRWRYVLTISIMDETNQLWLTLFDDQAEQLLGTSANKLMELKETD 556
Query: 763 P----ALKKAL-FTQYIFRLRAKLEHYN 785
P + +A+ QY FR+RA+ ++YN
Sbjct: 557 PNQFTKVTQAIQMNQYDFRIRAREDNYN 584
>gi|444321919|ref|XP_004181615.1| hypothetical protein TBLA_0G01500 [Tetrapisispora blattae CBS 6284]
gi|387514660|emb|CCH62096.1| hypothetical protein TBLA_0G01500 [Tetrapisispora blattae CBS 6284]
Length = 629
Score = 202 bits (515), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 107/333 (32%), Positives = 188/333 (56%), Gaps = 15/333 (4%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
P+ KFS++++ YE+S + T + CN+ ++P + F L +I + + IDVLG
Sbjct: 271 PSKPKFSNLSHPYELSIENDTIIEECNDVSTNDVPKTNFNFTKLDSIQNLETNSTIDVLG 330
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+T + +K + +RDI +VD++ + + LW ++A F+ ++A+K
Sbjct: 331 AIKTVNPHFELTSRAGKK-FDRRDIEIVDETGFIIKVGLWNQQAIDFNVPEGSIVAIKGV 389
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGGGAAG 183
RV++F GGK+LS+ SS L+ NPDI E + L+GW+ + + NT F + +GG G
Sbjct: 390 RVTDF-GGKSLSMGFSSTLTANPDISEAYSLKGWYDANRNNTTFTSYNSESGGPVSGEGL 448
Query: 184 NLLLMREI-----QDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNN 238
++ + I ++ LG +K D+ SV+ + + N Y AC ++ CNKKVI+Q +
Sbjct: 449 KKIISQRITIAKAKNDNLGRSEKGDFFSVKAAVSFLKVDNFAYPACSTEGCNKKVIEQTD 508
Query: 239 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP 298
G +RCEKC+ F + +R +L + I D T+ +W+TLF +A+ ++G+ A + E+ E++P
Sbjct: 509 GTWRCEKCDVSFPSPKWRYMLTISIMDETDQIWLTLFNEQAQQLIGLDASSLMETKENNP 568
Query: 299 ALKKALFTQYI------FRLRAKLEHYNGTKKI 325
+ TQ I FR+RA+ ++YN +I
Sbjct: 569 EEFNKI-TQQIQMKTLDFRIRAREDNYNDQTRI 600
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 123/406 (30%), Positives = 204/406 (50%), Gaps = 69/406 (16%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
I LSPYQN WTIKARV+ K ++ W+N RG GKL + +LLD SGEIRAT FN ++++
Sbjct: 194 IEQLSPYQNVWTIKARVSFKGDVKTWHNQRGEGKLLNFNLLDTSGEIRATCFNQLVDKYN 253
Query: 505 DMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP 564
+ I++ KVY+IS L+P+ KFS++++ YE+S + T + CN+ ++P + F
Sbjct: 254 ETIQEGKVYFISKARLQPSKPKFSNLSHPYELSIENDTIIEECNDVSTNDVPKTNFNFTK 313
Query: 565 LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE 624
L +I + + IDVLG +T + +K + +RDI +VD++ + + LW ++
Sbjct: 314 LDSIQNLETNSTIDVLGAIKTVNPHFELTSRAGKK-FDRRDIEIVDETGFIIKVGLWNQQ 372
Query: 625 AETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNT 684
A F+ ++A+K RV++F G L M D ++ S++G R +NT
Sbjct: 373 AIDFNVPEGSIVAIKGVRVTDFGGKSLSMG-FSSTLTANPDISEAYSLKGWYDANR-NNT 430
Query: 685 TYKACPSQDCN-------KKVIDQ--------NNGMYRCEK------------------- 710
T+ + S+ KK+I Q N+ + R EK
Sbjct: 431 TFTSYNSESGGPVSGEGLKKIISQRITIAKAKNDNLGRSEKGDFFSVKAAVSFLKVDNFA 490
Query: 711 --------CNKE-----------------FNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
CNK+ F + +R +L + I D T+ +W+TLF +A+
Sbjct: 491 YPACSTEGCNKKVIEQTDGTWRCEKCDVSFPSPKWRYMLTISIMDETDQIWLTLFNEQAQ 550
Query: 746 SILGVTAQEVGESTEDHPALKKALFTQYI------FRLRAKLEHYN 785
++G+ A + E+ E++P + TQ I FR+RA+ ++YN
Sbjct: 551 QLIGLDASSLMETKENNPEEFNKI-TQQIQMKTLDFRIRAREDNYN 595
>gi|240274193|gb|EER37711.1| replication factor A 1 [Ajellomyces capsulatus H143]
Length = 541
Score = 202 bits (514), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 150/514 (29%), Positives = 228/514 (44%), Gaps = 133/514 (25%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
ML TQ N +T G L V++K + + + + +LII +L ++ KI
Sbjct: 61 MLGTQANHYVTSGQLVRGCFVRLKSFQANMIKG-----KRILIIFDLEVLDRLGICEKKI 115
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNG---SNGVHNNVAIPRQASAPVVQT----HPIVSL 448
G+PQPL+T + + P ++NG S G P Q SA +PI +L
Sbjct: 116 GDPQPLDTKQEEQD-KTIPTTISSNGFYGSRGPQQPPQQPAQRSAAAATAHANIYPIEAL 174
Query: 449 SPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIE 508
SPY +KWTIKAR TNK+ I+ W+N G GKLFS++LLD+SGEIRAT F D+C+ + + E
Sbjct: 175 SPYSHKWTIKARCTNKSAIKTWHNKNGEGKLFSVNLLDDSGEIRATAFKDQCDSLYGVFE 234
Query: 509 KDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI 568
++ TT+ D +G LK +
Sbjct: 235 EEA-----------------------------GTTI-----DVIG----------VLKDV 250
Query: 569 AEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF 628
E+S + KT K Y KRD+TLVD + SV +T+WG A+ F
Sbjct: 251 GELS------------------QILSKTTSKPYDKRDLTLVDNTGYSVRLTVWGNIAKEF 292
Query: 629 DASNKPVIAVKAARVSEFQGN---------LLLMREIQDQQ------------------- 660
D+ + V+A K +VS+F G + + +I+D
Sbjct: 293 DSVPESVVAFKGVKVSDFNGRSLSLLSSGSMTVDPDIEDAHKLKGWYDAQGRSETFASHD 352
Query: 661 -----LGMGDKA--------------------DYCSVRGIIQVFRGSNTTYKACPSQDCN 695
G GD+A DY SV+ + + Y AC + CN
Sbjct: 353 SMNNAAGFGDRASSFKTIVQVHEGNLGMSEKPDYFSVKATVVYVKQDTMAYPACLTDKCN 412
Query: 696 KKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 755
KKV+ NG +RCE+C++ F YR IL V + D T ++W++ F + ILG +A E+
Sbjct: 413 KKVLQDENGQWRCERCDQSFPHPEYRYILSVNVCDHTGALWLSCFDEVGKIILGTSANEL 472
Query: 756 GESTED-----HPALKKALFTQYIFRLRAKLEHY 784
E E+ +++A + F RAK++++
Sbjct: 473 MELKENDERAYEELVQRANCRAWNFNCRAKMDNF 506
Score = 172 bits (437), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 153/273 (56%), Gaps = 8/273 (2%)
Query: 60 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVI 119
IDV+GV D ELS + KT K Y KRD+TLVD + SV +T+WG A+ FD+ + V+
Sbjct: 241 IDVIGVLKDVGELSQILSKTTSKPYDKRDLTLVDNTGYSVRLTVWGNIAKEFDSVPESVV 300
Query: 120 AVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRTGGMG 178
A K +VS+F G ++LSL S ++++PDI + HKL+GW+ Q + F G
Sbjct: 301 AFKGVKVSDFNG-RSLSLLSSGSMTVDPDIEDAHKLKGWYDAQGRSETFASHDSMNNAAG 359
Query: 179 -GGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQN 237
G A + + ++ + LGM +K DY SV+ + + Y AC + CNKKV+
Sbjct: 360 FGDRASSFKTIVQVHEGNLGMSEKPDYFSVKATVVYVKQDTMAYPACLTDKCNKKVLQDE 419
Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED- 296
NG +RCE+C++ F YR IL V + D T ++W++ F + ILG +A E+ E E+
Sbjct: 420 NGQWRCERCDQSFPHPEYRYILSVNVCDHTGALWLSCFDEVGKIILGTSANELMELKEND 479
Query: 297 ----HPALKKALFTQYIFRLRAKLEHYNGTKKI 325
+++A + F RAK++++ +++
Sbjct: 480 ERAYEELVQRANCRAWNFNCRAKMDNFQDQQRV 512
>gi|303391020|ref|XP_003073740.1| DNA replication factor A protein 1 [Encephalitozoon intestinalis
ATCC 50506]
gi|303302888|gb|ADM12380.1| DNA replication factor A protein 1 [Encephalitozoon intestinalis
ATCC 50506]
Length = 572
Score = 202 bits (513), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 140/510 (27%), Positives = 251/510 (49%), Gaps = 65/510 (12%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGV+ + +++L G +S +++++ R+ V + + SV I ++
Sbjct: 48 LSDGVHYMK-GIFSSELTAHFEKGLVSRYSLIRPGRFSVR------SKDGSVYIYIQE-- 98
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQT-- 442
I+ + +IG P ++T + + Q G + A+ + V +
Sbjct: 99 IQEYEDCNVEIGKPVNISTGNASFNDNQLSPGIQKRVDGGNQHGKALDEEDKKRVKKDIK 158
Query: 443 -----HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFN 497
I L+P+ NKW IK RV K IR ++N +G GK+F+ ++ D + +++ F+
Sbjct: 159 DEGEFTAINMLNPFHNKWMIKGRVVLKGDIRRFSNQKGEGKVFNFEISDGTAQVKIICFS 218
Query: 498 DECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPS 557
D + F ++E KVY +S T+K ANK++S+ DYE+ ++ V C D+ P
Sbjct: 219 DCVDIFFPIVEVGKVYSVSKGTVKMANKQYSTNPFDYEIILDKNSEV-RCTVDD--GSPR 275
Query: 558 VKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVT 617
+ F+ L ++ + DV+GV + S+V ++ Q +KRDI LVD+S SV
Sbjct: 276 YFFNFIKLSDLS--LGNAYCDVIGVVREVYAPSTVMVRSTQNELLKRDIILVDES-GSVR 332
Query: 618 MTLWGKEAETFDASNKPVIAVKAARVSEFQG---------NLLLMREI------------ 656
+TLWG +AE D V+ +K+ +VSEF G +++ +I
Sbjct: 333 LTLWGPKAE-LDIEGGVVLGLKSVKVSEFNGISISTTGGSQVVINPDIPEAHELAGWYQS 391
Query: 657 --QDQQLGMGDKAD--------------YCSVRGIIQVFRGSNTTYKACPSQDCNKKVID 700
+D Q+ + K + Y +++G + + Y +C + CNKKV+
Sbjct: 392 TGKDMQVALPRKEEKRRLIQEVKENELAYSTIQGTVMFLKEDALWYTSCKGEGCNKKVVM 451
Query: 701 QNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE 760
+++G YRCE+CN + YR ++ + +GD+T VW++LF A S G+ AQE+ +E
Sbjct: 452 EDSGNYRCERCNMTYEDCNYRYMVTMHLGDFTGQVWLSLFDEAAASFFGIPAQEMKRMSE 511
Query: 761 DHPALKKAL-----FTQYIFRLRAKLEHYN 785
+ PA +AL F +Y+FR+++K + YN
Sbjct: 512 ESPAELQALIKGMYFKEYLFRIKSKQDSYN 541
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 175/320 (54%), Gaps = 27/320 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK++S+ DYE+ ++ V C D+ P + F+ L ++ + DV+GV
Sbjct: 244 ANKQYSTNPFDYEIILDKNSEV-RCTVDD--GSPRYFFNFIKLSDLS--LGNAYCDVIGV 298
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ S+V ++ Q +KRDI LVD+S SV +TLWG +AE D V+ +K+ +
Sbjct: 299 VREVYAPSTVMVRSTQNELLKRDIILVDES-GSVRLTLWGPKAE-LDIEGGVVLGLKSVK 356
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
VSEF G ++S + S + +NPDIPE H+L GW+ + T + R
Sbjct: 357 VSEFNG-ISISTTGGSQVVINPDIPEAHELAGWYQS-TGKDMQVALPR-------KEEKR 407
Query: 186 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 245
L++E+++ +L Y +++G + + Y +C + CNKKV+ +++G YRCE+
Sbjct: 408 RLIQEVKENELA------YSTIQGTVMFLKEDALWYTSCKGEGCNKKVVMEDSGNYRCER 461
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKAL- 304
CN + YR ++ + +GD+T VW++LF A S G+ AQE+ +E+ PA +AL
Sbjct: 462 CNMTYEDCNYRYMVTMHLGDFTGQVWLSLFDEAAASFFGIPAQEMKRMSEESPAELQALI 521
Query: 305 ----FTQYIFRLRAKLEHYN 320
F +Y+FR+++K + YN
Sbjct: 522 KGMYFKEYLFRIKSKQDSYN 541
>gi|260793785|ref|XP_002591891.1| hypothetical protein BRAFLDRAFT_89408 [Branchiostoma floridae]
gi|229277103|gb|EEN47902.1| hypothetical protein BRAFLDRAFT_89408 [Branchiostoma floridae]
Length = 265
Score = 201 bits (512), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 145/237 (61%), Gaps = 8/237 (3%)
Query: 95 SQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHK 154
S V +TLWG EA+ FD S+ PV+A+K AR+S+F GG++LS SS + +NPDIPE ++
Sbjct: 2 SGKQVNLTLWGGEADKFDGSSSPVVAIKGARLSDF-GGRSLSTVGSSTIMINPDIPEAYQ 60
Query: 155 LQGWFS-TQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQV 213
L+GW+ N + +S GG G G N ++++D+ LG G+K D+ + +G I
Sbjct: 61 LRGWYDKVGCNAEAQSISTGAGG-GAGRPTNWKSFQQVKDENLGTGEKPDFFTTKGTIVF 119
Query: 214 FRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVT 273
+ N+ Y+ACP+QDCNKKV+D NG + CEKC+KEF F YR+IL + D++ + W T
Sbjct: 120 LKKENSMYQACPTQDCNKKVVDLQNGFFSCEKCSKEFPNFKYRMILSANVADFSGNQWTT 179
Query: 274 LFQNEAESILGVTAQEVG-----ESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
FQ AE+ILG + +G + T +A F YIF +R K++ YN +I
Sbjct: 180 CFQETAETILGQNTEYLGNLKDQDDTAYDQVFTEANFKSYIFNMRVKMDTYNDESRI 236
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 113/230 (49%), Gaps = 56/230 (24%)
Query: 612 SQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG----------------------- 648
S V +TLWG EA+ FD S+ PV+A+K AR+S+F G
Sbjct: 2 SGKQVNLTLWGGEADKFDGSSSPVVAIKGARLSDFGGRSLSTVGSSTIMINPDIPEAYQL 61
Query: 649 ----------------------------NLLLMREIQDQQLGMGDKADYCSVRGIIQVFR 680
N ++++D+ LG G+K D+ + +G I +
Sbjct: 62 RGWYDKVGCNAEAQSISTGAGGGAGRPTNWKSFQQVKDENLGTGEKPDFFTTKGTIVFLK 121
Query: 681 GSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLF 740
N+ Y+ACP+QDCNKKV+D NG + CEKC+KEF F YR+IL + D++ + W T F
Sbjct: 122 KENSMYQACPTQDCNKKVVDLQNGFFSCEKCSKEFPNFKYRMILSANVADFSGNQWTTCF 181
Query: 741 QNEAESILGVTAQEVG-----ESTEDHPALKKALFTQYIFRLRAKLEHYN 785
Q AE+ILG + +G + T +A F YIF +R K++ YN
Sbjct: 182 QETAETILGQNTEYLGNLKDQDDTAYDQVFTEANFKSYIFNMRVKMDTYN 231
>gi|429963164|gb|ELA42708.1| replication factor-a protein 1 (rpa1) [Vittaforma corneae ATCC
50505]
Length = 588
Score = 199 bits (506), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 136/531 (25%), Positives = 256/531 (48%), Gaps = 77/531 (14%)
Query: 317 EHYNGTKKIPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSV 376
E Y + DG + A+ +++L +I ++ F ++++ + V + +
Sbjct: 40 EKYRYKANLSDGTHYMK-AVFSSELANIFDSNEIARFYVIKLGSFTVRPKDNSNYLYIQS 98
Query: 377 LIILELNIIKPGTEIGFKIGNPQ--PLNTNTDNSSTQQ-------TPAATNTN----GSN 423
+ E + G + G P P +N + Q+ +P + N +
Sbjct: 99 IAAYEKFESEFGHSVNISSGKPSFDPSGSNKNEEEVQKENSRQSVSPKSATNNEMHYATL 158
Query: 424 GVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSID 483
V+ R A I + P++ + K RV +KT I+++ +G G++FS +
Sbjct: 159 SVNQEDVSKRFKEAANEDITDIKKIFPHKKTFKFKGRVVSKTEIKKFTTQKGDGQVFSFE 218
Query: 484 LLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTT 543
+ D +G+I+ F++ + F+ ++E +K Y ISN T+KP+NKKFS+ +D+E+ +T
Sbjct: 219 IADCTGQIKCVAFSECVDTFYPLVENNKAYVISNVTVKPSNKKFSNNTSDFEIHLEKNTI 278
Query: 544 VIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMK 603
+ +D N+P + FV + +A + +D L V +A + +T K+ + K
Sbjct: 279 ITKVEDD---NIPKYMFKFVKIADLASVGGV--VDCLAVIKEAYPVGKITIKSTGRESAK 333
Query: 604 RDITLVDQSQASVTMTLWGKEA-ETFDASNKPVIAVKAARVSEFQG-------------- 648
RD+ ++DQ+ S +TLWG +A E ++ N +I + + +V ++ G
Sbjct: 334 RDLMIIDQT-GSCRLTLWGPKAEEEYEKDN--IICLGSVKVGDYNGINLTTVSNSQVIQN 390
Query: 649 ------------------NLLL-----------MREIQDQQLGMGDKADYCSVRGIIQVF 679
N+++ + E++D L +Y +++G +
Sbjct: 391 IELPEAIELLAWYEEKGRNIVIEKPKRIPKRSFISEVKDNSL------EYATIQGSVVYL 444
Query: 680 RGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTL 739
+ Y+ACPS+ CNKKV+ ++NG++RCEKCN F YR ++ + +GD+T +W+T+
Sbjct: 445 KEEGLFYEACPSETCNKKVLMEDNGIFRCEKCNYTFEKCNYRYMINIHVGDFTGQMWITI 504
Query: 740 FQNEAESILGVTAQEVGESTEDHPA----LKKALFTQYI-FRLRAKLEHYN 785
F +S+LGVTA E+ E E +P L K ++++ + FRLR K E+YN
Sbjct: 505 FDEGGKSLLGVTAAELKEMGECNPENVHNLIKGIYSKELQFRLRNKEENYN 555
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 177/327 (54%), Gaps = 29/327 (8%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
P+NKKFS+ +D+E+ +T + +D N+P + FV + +A + +D L
Sbjct: 257 PSNKKFSNNTSDFEIHLEKNTIITKVEDD---NIPKYMFKFVKIADLASVGGV--VDCLA 311
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET-FDASNKPVIAVKA 123
V +A + +T K+ + KRD+ ++DQ+ S +TLWG +AE ++ N +I + +
Sbjct: 312 VIKEAYPVGKITIKSTGRESAKRDLMIIDQT-GSCRLTLWGPKAEEEYEKDN--IICLGS 368
Query: 124 ARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAG 183
+V ++ G ++S S V+ N ++PE +L W+ + +R
Sbjct: 369 VKVGDYNGINLTTVSNSQVIQ-NIELPEAIELLAWYEEKGRNIVIEKPKRIPKRS----- 422
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ E++D L +Y +++G + + Y+ACPS+ CNKKV+ ++NG++RC
Sbjct: 423 ---FISEVKDNSL------EYATIQGSVVYLKEEGLFYEACPSETCNKKVLMEDNGIFRC 473
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA---- 299
EKCN F YR ++ + +GD+T +W+T+F +S+LGVTA E+ E E +P
Sbjct: 474 EKCNYTFEKCNYRYMINIHVGDFTGQMWITIFDEGGKSLLGVTAAELKEMGECNPENVHN 533
Query: 300 LKKALFTQYI-FRLRAKLEHYNGTKKI 325
L K ++++ + FRLR K E+YNG K+
Sbjct: 534 LIKGIYSKELQFRLRNKEENYNGDIKL 560
>gi|401827683|ref|XP_003888134.1| replication factor A protein 1 [Encephalitozoon hellem ATCC 50504]
gi|392999334|gb|AFM99153.1| replication factor A protein 1 [Encephalitozoon hellem ATCC 50504]
Length = 572
Score = 199 bits (505), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 146/512 (28%), Positives = 254/512 (49%), Gaps = 69/512 (13%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGVN + +++L G +S++++++ R+ V + + SV I ++
Sbjct: 48 LSDGVNYMK-GIFSSELTPHFEKGLVSKYSLIRPGRFSVR------SKDGSVYIYIQE-- 98
Query: 385 IKPGTEIGFKIGNPQPLNT-NTDNSSTQQTPAATNTNGSNGVHNNVA-------IPRQAS 436
I+ + +IG P ++T N S Q +P N H A + R ++
Sbjct: 99 IQEYEDCNVEIGKPVNISTGNASFSDNQPSPGNLKRVEVNQQHWKQADEEDKKRVKRDSN 158
Query: 437 APVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMF 496
T I L+P+ NKW IK RV K IR + N +G GK+F+ +L D + +++ F
Sbjct: 159 CDGEFT-AINMLNPFHNKWVIKGRVVVKGDIRRFTNQKGEGKVFNFELSDGTAQVKIICF 217
Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
+D + F ++E KVY ++ T+K ANK++S+ DYE+ ++ V C D+
Sbjct: 218 SDCVDIFFPIVEVGKVYTVTKGTVKMANKQYSTNPFDYEIILDKNSEV-RCAADD----G 272
Query: 557 SVKYCFVPLKTIAEIS-PDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQAS 615
S +Y F I++IS DV+GV +A S+V ++ Q +KRD+ LVD+S S
Sbjct: 273 SPRY-FFNFTKISDISLGSAYCDVIGVVKEAYGPSTVMVRSTQNELLKRDVVLVDES-GS 330
Query: 616 VTMTLWGKEAETFDASNKPVIAVKAARVSEFQG--------------------------- 648
V +TLWG++AE D VI +K+ +VSEF G
Sbjct: 331 VRLTLWGQKAE-IDIEEGVVIGLKSIKVSEFNGISISTTGGSQVVVNPDISEAHELAGWY 389
Query: 649 -------NLLLMREIQDQQLGMGDKAD---YCSVRGIIQVFRGSNTTYKACPSQDCNKKV 698
+ L R+ + ++L K + Y +++G + + Y +C + CNKKV
Sbjct: 390 QSIGKNMQVTLPRKEEKRRLVQEVKENELAYSTIQGTVMFLKEDALWYASCKGEGCNKKV 449
Query: 699 IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGES 758
+ + G YRCE+CN + YR ++ + +GD+T +WV+LF A G++A+E+ E
Sbjct: 450 MIEEGGNYRCERCNMTYEDCNYRYMVTMHLGDFTGQIWVSLFDEAATGFFGISAKEMKEM 509
Query: 759 TEDHPA-----LKKALFTQYIFRLRAKLEHYN 785
+E+ PA +++ F + +FR+++K ++YN
Sbjct: 510 SEESPAELQALIRRMCFRECLFRIKSKQDNYN 541
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 106/349 (30%), Positives = 192/349 (55%), Gaps = 32/349 (9%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEIS-PDENIDVLG 64
ANK++S+ DYE+ ++ V C D+ S +Y F I++IS DV+G
Sbjct: 244 ANKQYSTNPFDYEIILDKNSEV-RCAADD----GSPRY-FFNFTKISDISLGSAYCDVIG 297
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V +A S+V ++ Q +KRD+ LVD+S SV +TLWG++AE D VI +K+
Sbjct: 298 VVKEAYGPSTVMVRSTQNELLKRDVVLVDES-GSVRLTLWGQKAE-IDIEEGVVIGLKSI 355
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGN 184
+VSEF G ++S + S + +NPDI E H+L GW+ + + ++
Sbjct: 356 KVSEFNG-ISISTTGGSQVVVNPDISEAHELAGWYQSIGKNMQVTLPRK--------EEK 406
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
L++E+++ +L Y +++G + + Y +C + CNKKV+ + G YRCE
Sbjct: 407 RRLVQEVKENELA------YSTIQGTVMFLKEDALWYASCKGEGCNKKVMIEEGGNYRCE 460
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA----- 299
+CN + YR ++ + +GD+T +WV+LF A G++A+E+ E +E+ PA
Sbjct: 461 RCNMTYEDCNYRYMVTMHLGDFTGQIWVSLFDEAATGFFGISAKEMKEMSEESPAELQAL 520
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKIP-DGVNINSFAML--ATQLNDII 345
+++ F + +FR+++K ++YN ++ G+++++ +L + +L D+I
Sbjct: 521 IRRMCFRECLFRIKSKQDNYNDELRMRYSGLSVSALDILKESKRLLDVI 569
>gi|156843819|ref|XP_001644975.1| hypothetical protein Kpol_1025p37 [Vanderwaltozyma polyspora DSM
70294]
gi|156115629|gb|EDO17117.1| hypothetical protein Kpol_1025p37 [Vanderwaltozyma polyspora DSM
70294]
Length = 618
Score = 198 bits (504), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 114/334 (34%), Positives = 184/334 (55%), Gaps = 20/334 (5%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA +FS++++ YE+S T + C ++ N+P + F+ L I +DVLG
Sbjct: 263 PAKPQFSNLSHPYELSLDRETVIEECQDE--SNVPKTHFSFIKLDAIQNQEASSTVDVLG 320
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V +T K +K + +RDIT+VD S S+++ LW ++A F+ ++A+K
Sbjct: 321 VIQTVNPHFELTSKAGKK-FDRRDITIVDDSGFSISVGLWNQQALDFNLPEGSIVAIKGV 379
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAG 183
RVS+F GGK+LS+ +S L NP+IPE + L+GW+ T N F ++Q GG ++
Sbjct: 380 RVSDF-GGKSLSMGFNSTLIPNPEIPEAYSLKGWYDTSGKNENFSSLNQEVGG--APSSD 436
Query: 184 NLL-------LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 236
NL+ + + Q LG +K D+ SV+ + + N Y AC + DCNKKVI +
Sbjct: 437 NLMKFISQRTTIAKAQSDNLGKSEKGDFFSVKASVSFLKVDNFAYPACTNADCNKKVI-E 495
Query: 237 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 296
+NG +RCE+C+K +R +L + I D T +W+TLF ++A+ +LG+ A + E +
Sbjct: 496 HNGSWRCERCDKTSEQPEWRYMLTISIMDETGQMWLTLFNDQAKQLLGIDANSLIELKDS 555
Query: 297 HPAL--KKALFTQ---YIFRLRAKLEHYNGTKKI 325
P KK Q Y FR+RA+ ++YN +I
Sbjct: 556 DPDAFSKKTQSIQMNPYDFRIRAREDNYNDQTRI 589
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 136/436 (31%), Positives = 205/436 (47%), Gaps = 79/436 (18%)
Query: 417 TNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGS 476
T+ + S NN Q S P+ I LSPYQN WTIKARV+ K I+ W+N +G
Sbjct: 161 THQSNSTSHQNNTMSDSQKSRPIF---AIEQLSPYQNVWTIKARVSYKGEIKTWHNQKGE 217
Query: 477 GKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEM 536
GKLFS++ LD SGEIRAT FND +F++++++ KVYY+S L+PA +FS++++ YE+
Sbjct: 218 GKLFSVNFLDTSGEIRATAFNDMATKFNEVLQEGKVYYVSKARLQPAKPQFSNLSHPYEL 277
Query: 537 SFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKT 596
S T + C ++ N+P + F+ L I +DVLGV +T K
Sbjct: 278 SLDRETVIEECQDE--SNVPKTHFSFIKLDAIQNQEASSTVDVLGVIQTVNPHFELTSKA 335
Query: 597 NQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMR-- 654
+K + +RDIT+VD S S+++ LW ++A F+ ++A+K RVS+F G L M
Sbjct: 336 GKK-FDRRDITIVDDSGFSISVGLWNQQALDFNLPEGSIVAIKGVRVSDFGGKSLSMGFN 394
Query: 655 -------EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVID------- 700
EI + G + G + F N PS D K I
Sbjct: 395 STLIPNPEIPEAYSLKG----WYDTSGKNENFSSLNQEVGGAPSSDNLMKFISQRTTIAK 450
Query: 701 -QNNGMYRCEK---------------------------CNK------------------E 714
Q++ + + EK CNK E
Sbjct: 451 AQSDNLGKSEKGDFFSVKASVSFLKVDNFAYPACTNADCNKKVIEHNGSWRCERCDKTSE 510
Query: 715 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPAL--KKALFTQ 772
+ Y L + +M D T +W+TLF ++A+ +LG+ A + E + P KK Q
Sbjct: 511 QPEWRYMLTISIM--DETGQMWLTLFNDQAKQLLGIDANSLIELKDSDPDAFSKKTQSIQ 568
Query: 773 ---YIFRLRAKLEHYN 785
Y FR+RA+ ++YN
Sbjct: 569 MNPYDFRIRAREDNYN 584
>gi|392512868|emb|CAD25779.2| DNA REPLICATION FACTOR A PROTEIN 1 [Encephalitozoon cuniculi GB-M1]
Length = 572
Score = 198 bits (504), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 140/512 (27%), Positives = 250/512 (48%), Gaps = 69/512 (13%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGVN + +++L G +S +++++ R+ V + + SV I ++
Sbjct: 48 LSDGVNYMK-GIFSSELTPHFEKGLVSRYSLIRPGRFSVR------SKDGSVYIYIQE-- 98
Query: 385 IKPGTEIGFKIGNPQPLNT-NTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTH 443
I+ + +IG P ++T N S Q +P N +NGV+ + P + V+
Sbjct: 99 IQAYEDCNVEIGKPVNISTGNASFSDNQASPG--NQRHTNGVNQHRRAPDEEDKKRVKRD 156
Query: 444 P--------IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATM 495
I L+P+ NKW IK RV K+ IR + N +G GK+F+ ++ D + +++
Sbjct: 157 AEDEGEFTAINMLNPFHNKWAIKGRVVMKSDIRRFTNQKGEGKVFNFEVSDGTAQVKIIC 216
Query: 496 FNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNM 555
F+D + F ++E KVY I+ T+K ANK++S+ DYE+ S+ V +D
Sbjct: 217 FSDCVDIFFPIVEVGKVYTIAKGTVKMANKQYSTNPFDYEIILDKSSEVHRAADD----- 271
Query: 556 PSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQAS 615
S KY F +K + D +GV + S+V ++ Q +KRD LVD S
Sbjct: 272 GSPKYFFNFVKISDLTLGNAYCDTIGVVKEVYAPSTVMVRSTQSELLKRDAVLVDDG-GS 330
Query: 616 VTMTLWGKEAETFDASNKPVIAVKAARVSEFQG---------------NLLLMREIQ--- 657
V +TLWG +AE + + V+A+K+ +VSEF G ++ E++
Sbjct: 331 VRLTLWGPKAE-LEIESGMVLALKSIKVSEFNGISISTTGGSQVVTNPDIAEAHELEGWY 389
Query: 658 -----DQQLGMGDKAD--------------YCSVRGIIQVFRGSNTTYKACPSQDCNKKV 698
D Q+ + + + Y +V+G + + Y +C + CNKKV
Sbjct: 390 QSIGKDMQVTLPRREEKRRLIQEVKESDLTYSTVQGTVMFLKEDGLWYTSCKGEGCNKKV 449
Query: 699 IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGES 758
+ ++ G YRCE+CN + YR ++ + +GD++ +WV+LF A S G++A+E+
Sbjct: 450 VMEDGGCYRCERCNMTYEDCDYRYMVTMHLGDFSGQMWVSLFDEVATSFFGISAREMKVM 509
Query: 759 TEDHPA-----LKKALFTQYIFRLRAKLEHYN 785
+E+ P +++ F + +FR+++K + YN
Sbjct: 510 SEEAPGELQALIRRMYFRECLFRIKSKQDSYN 541
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 167/320 (52%), Gaps = 27/320 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK++S+ DYE+ S+ V +D S KY F +K + D +GV
Sbjct: 244 ANKQYSTNPFDYEIILDKSSEVHRAADD-----GSPKYFFNFVKISDLTLGNAYCDTIGV 298
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ S+V ++ Q +KRD LVD SV +TLWG +AE + + V+A+K+ +
Sbjct: 299 VKEVYAPSTVMVRSTQSELLKRDAVLVDDG-GSVRLTLWGPKAE-LEIESGMVLALKSIK 356
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
VSEF G ++S + S + NPDI E H+L+GW+ + + +R
Sbjct: 357 VSEFNG-ISISTTGGSQVVTNPDIAEAHELEGWYQSIGKDMQVTLPRR--------EEKR 407
Query: 186 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 245
L++E+++ L Y +V+G + + Y +C + CNKKV+ ++ G YRCE+
Sbjct: 408 RLIQEVKESDL------TYSTVQGTVMFLKEDGLWYTSCKGEGCNKKVVMEDGGCYRCER 461
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----L 300
CN + YR ++ + +GD++ +WV+LF A S G++A+E+ +E+ P +
Sbjct: 462 CNMTYEDCDYRYMVTMHLGDFSGQMWVSLFDEVATSFFGISAREMKVMSEEAPGELQALI 521
Query: 301 KKALFTQYIFRLRAKLEHYN 320
++ F + +FR+++K + YN
Sbjct: 522 RRMYFRECLFRIKSKQDSYN 541
>gi|365990984|ref|XP_003672321.1| hypothetical protein NDAI_0J01860 [Naumovozyma dairenensis CBS 421]
gi|343771096|emb|CCD27078.1| hypothetical protein NDAI_0J01860 [Naumovozyma dairenensis CBS 421]
Length = 618
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 182/336 (54%), Gaps = 22/336 (6%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA +F+++ + YE++ T + C +++ N+P + F+ L I + N+DVLG
Sbjct: 261 PAKPQFTNLTHPYELNLDRDTVIEECFDED--NVPKTHFNFIKLDAIPNQENNTNVDVLG 318
Query: 65 VCIDAA---ELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAV 121
V EL+S GK + +RDI++VD+S +++ LW ++A F+ V+A+
Sbjct: 319 VIQTVNPHFELTSRAGKR----FDRRDISIVDESGFEISVGLWNQQAIDFNLPEGSVVAI 374
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGGG 180
K RVS+F GGK+LS+ +S L NP+IPE + L+GW+ ST N F + Q G
Sbjct: 375 KGVRVSDF-GGKSLSMGFNSTLVPNPEIPEAYSLKGWYDSTGRNGNFTSLKQEAGSNNIS 433
Query: 181 AA------GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVI 234
+A + + Q + LG +K DY SV+ I + N Y AC +++CNKKVI
Sbjct: 434 SANQEKFISQRITITRAQAENLGKSEKGDYFSVKAAISFLKVDNFAYPACSNENCNKKVI 493
Query: 235 DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGEST 294
+Q +G +RCEKC +R +L + + D TN +W+TLF ++AE +L + A ++
Sbjct: 494 EQPDGTWRCEKCETNNEAPQWRYMLTISVMDETNQLWLTLFNDQAEQLLDIDANKLIALK 553
Query: 295 EDHPA-----LKKALFTQYIFRLRAKLEHYNGTKKI 325
E+ P + QY FR+RA+ + YN +I
Sbjct: 554 ENDPEEFTKITQSIQMNQYDFRIRAREDSYNDQTRI 589
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 114/347 (32%), Positives = 184/347 (53%), Gaps = 43/347 (12%)
Query: 344 IITDGTL--------SEFTIVQIKRYIVSGVSSGSAT-----NRSVLIILELNIIKPGTE 390
+ITDG S T Q++R + V++G A N+ L I + +++ G E
Sbjct: 49 MITDGVYHMKSLLRGSAATKFQLQRGDIIRVTAGEANYFPQRNKYALAIDDFELVETGVE 108
Query: 391 IGFKIG-------NPQP------LNTNTDNSSTQQTPA--ATNTNGSNGVHNNVAIPRQA 435
+ + N P ++N +N++T T A AT N S +Q+
Sbjct: 109 LVNRASKFLDAYFNEHPNERLIVPSSNIENTTTDATSANNATEQNPSQQQQQQQQQRKQS 168
Query: 436 SAPVVQTH---PIVS---LSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG 489
+ P + PI + LSPYQN WTIKARV+ K I++W+N RG G LF+++ LD SG
Sbjct: 169 NFPSSHSQKSKPIFAIEQLSPYQNIWTIKARVSYKGEIKKWHNQRGDGSLFNVNFLDTSG 228
Query: 490 EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNE 549
EIRAT FN+ +F +++++ KVYY+S L+PA +F+++ + YE++ T + C +
Sbjct: 229 EIRATAFNENAEKFSEILQEGKVYYVSKARLQPAKPQFTNLTHPYELNLDRDTVIEECFD 288
Query: 550 DEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAA---ELSSVTGKTNQKTYMKRDI 606
++ N+P + F+ L I + N+DVLGV EL+S G K + +RDI
Sbjct: 289 ED--NVPKTHFNFIKLDAIPNQENNTNVDVLGVIQTVNPHFELTSRAG----KRFDRRDI 342
Query: 607 TLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM 653
++VD+S +++ LW ++A F+ V+A+K RVS+F G L M
Sbjct: 343 SIVDESGFEISVGLWNQQAIDFNLPEGSVVAIKGVRVSDFGGKSLSM 389
Score = 102 bits (254), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Query: 638 VKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKK 697
+ +A +F + + Q + LG +K DY SV+ I + N Y AC +++CNKK
Sbjct: 432 ISSANQEKFISQRITITRAQAENLGKSEKGDYFSVKAAISFLKVDNFAYPACSNENCNKK 491
Query: 698 VIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE 757
VI+Q +G +RCEKC +R +L + + D TN +W+TLF ++AE +L + A ++
Sbjct: 492 VIEQPDGTWRCEKCETNNEAPQWRYMLTISVMDETNQLWLTLFNDQAEQLLDIDANKLIA 551
Query: 758 STEDHPA-----LKKALFTQYIFRLRAKLEHYN 785
E+ P + QY FR+RA+ + YN
Sbjct: 552 LKENDPEEFTKITQSIQMNQYDFRIRAREDSYN 584
>gi|255547187|ref|XP_002514651.1| replication factor A 1, rfa1, putative [Ricinus communis]
gi|223546255|gb|EEF47757.1| replication factor A 1, rfa1, putative [Ricinus communis]
Length = 622
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 159/538 (29%), Positives = 254/538 (47%), Gaps = 92/538 (17%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
A+ ++L+ I G + +++I Y V+ + S S + LII + ++ P E+ K
Sbjct: 55 AIFNSRLSTEIISGNIQNLGLIRILDYTVNEIPSKS---ENYLIITKCEVVSPALEMEIK 111
Query: 395 ----------IGNP--------QPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQAS 436
P Q ++ Q+ A + + H N+A P
Sbjct: 112 DEAKTEEAAITLKPKQETQVIKQEVSGGILLKPKQEMVAKSAAQIVHEQHKNMA-PTARM 170
Query: 437 APVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATM 495
A + HP+VSL+PYQ WTIK RVT+K +R + NARG G +F+++L DE G +I+ATM
Sbjct: 171 AMTRRVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATM 230
Query: 496 FNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNM 555
FN+ +F+D + KVYYIS +LK ANK+F ++ NDYEM+ ++ V + DE +
Sbjct: 231 FNEAARKFYDKFQLGKVYYISKGSLKVANKQFRTVQNDYEMNLNENSQVEEAS-DEAAFI 289
Query: 556 PSVKYCFVPLKTIAE-ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA 614
P K+ FVP+ + +S +E +DV+GV + S+ K+N KRDIT+ D+++
Sbjct: 290 PETKFNFVPIDQLGPYVSTNELVDVIGVVQSVSPTMSIRRKSNNDIVPKRDITIADETKK 349
Query: 615 SVTMTLWGKEA-----ETFDASNK-PVIAVKAARVSEFQGNLL--LMREI--------QD 658
+V ++LW A E D ++K PV+A+KA +V +FQG L L R I +
Sbjct: 350 TVVVSLWNDLATDVGQELLDMADKSPVVAIKALKVGDFQGVSLSTLGRSIIQVNPDTPES 409
Query: 659 QQL----------------GMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVI--- 699
++L G G S G + R S + + PS +K
Sbjct: 410 KKLKSWFDSEGKETSLASVGAGLSPSTKSGGGSMYSDRVSISHITSNPSLGSDKPAFFSI 469
Query: 700 ---------DQNNGMYRCEKCNKEFNTF-----------------TYRLILPVMIGDWTN 733
DQ+ C+ CNK+ + R I+ V + D +
Sbjct: 470 RAYISFIKPDQSMWYRACKTCNKKVTEAIGGGYWCEGCQKNDAECSLRYIMVVKVSDASG 529
Query: 734 SVWVTLFQNEAESILGVTAQEVG--ESTEDHPA----LKKALFTQYIFRLRAKLEHYN 785
WV+ F NE E I+G +A E+ +S ED + LK+A ++ ++FR+ YN
Sbjct: 530 EGWVSAFNNEGERIIGCSADELDKLKSQEDGNSYELKLKEATWSPHLFRVSVAQNEYN 587
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/338 (32%), Positives = 176/338 (52%), Gaps = 23/338 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE-ISPDENIDVLG 64
ANK+F ++ NDYEM+ ++ V + DE +P K+ FVP+ + +S +E +DV+G
Sbjct: 258 ANKQFRTVQNDYEMNLNENSQVEEAS-DEAAFIPETKFNFVPIDQLGPYVSTNELVDVIG 316
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ETFDASNK-PV 118
V + S+ K+N KRDIT+ D+++ +V ++LW A E D ++K PV
Sbjct: 317 VVQSVSPTMSIRRKSNNDIVPKRDITIADETKKTVVVSLWNDLATDVGQELLDMADKSPV 376
Query: 119 IAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPV----SQR 173
+A+KA +V +FQG +LS S++ +NPD PE KL+ WF ++ T V S
Sbjct: 377 VAIKALKVGDFQG-VSLSTLGRSIIQVNPDTPESKKLKSWFDSEGKETSLASVGAGLSPS 435
Query: 174 TGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDCNKK 232
T GG + + + I DK + S+R I + + Y+AC + CNKK
Sbjct: 436 TKSGGGSMYSDRVSISHITSNPSLGSDKPAFFSIRAYISFIKPDQSMWYRACKT--CNKK 493
Query: 233 VIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG- 291
V + G Y CE C K + R I+ V + D + WV+ F NE E I+G +A E+
Sbjct: 494 VTEAIGGGYWCEGCQKNDAECSLRYIMVVKVSDASGEGWVSAFNNEGERIIGCSADELDK 553
Query: 292 -ESTEDHPA----LKKALFTQYIFRLRAKLEHYNGTKK 324
+S ED + LK+A ++ ++FR+ YN K+
Sbjct: 554 LKSQEDGNSYELKLKEATWSPHLFRVSVAQNEYNNEKR 591
>gi|19074669|ref|NP_586175.1| DNA REPLICATION FACTOR A PROTEIN 1 [Encephalitozoon cuniculi GB-M1]
Length = 623
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 140/512 (27%), Positives = 250/512 (48%), Gaps = 69/512 (13%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGVN + +++L G +S +++++ R+ V + + SV I ++
Sbjct: 99 LSDGVNYMK-GIFSSELTPHFEKGLVSRYSLIRPGRFSVR------SKDGSVYIYIQE-- 149
Query: 385 IKPGTEIGFKIGNPQPLNT-NTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTH 443
I+ + +IG P ++T N S Q +P N +NGV+ + P + V+
Sbjct: 150 IQAYEDCNVEIGKPVNISTGNASFSDNQASPG--NQRHTNGVNQHRRAPDEEDKKRVKRD 207
Query: 444 P--------IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATM 495
I L+P+ NKW IK RV K+ IR + N +G GK+F+ ++ D + +++
Sbjct: 208 AEDEGEFTAINMLNPFHNKWAIKGRVVMKSDIRRFTNQKGEGKVFNFEVSDGTAQVKIIC 267
Query: 496 FNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNM 555
F+D + F ++E KVY I+ T+K ANK++S+ DYE+ S+ V +D
Sbjct: 268 FSDCVDIFFPIVEVGKVYTIAKGTVKMANKQYSTNPFDYEIILDKSSEVHRAADD----- 322
Query: 556 PSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQAS 615
S KY F +K + D +GV + S+V ++ Q +KRD LVD S
Sbjct: 323 GSPKYFFNFVKISDLTLGNAYCDTIGVVKEVYAPSTVMVRSTQSELLKRDAVLVDDG-GS 381
Query: 616 VTMTLWGKEAETFDASNKPVIAVKAARVSEFQG---------------NLLLMREIQ--- 657
V +TLWG +AE + + V+A+K+ +VSEF G ++ E++
Sbjct: 382 VRLTLWGPKAE-LEIESGMVLALKSIKVSEFNGISISTTGGSQVVTNPDIAEAHELEGWY 440
Query: 658 -----DQQLGMGDKAD--------------YCSVRGIIQVFRGSNTTYKACPSQDCNKKV 698
D Q+ + + + Y +V+G + + Y +C + CNKKV
Sbjct: 441 QSIGKDMQVTLPRREEKRRLIQEVKESDLTYSTVQGTVMFLKEDGLWYTSCKGEGCNKKV 500
Query: 699 IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGES 758
+ ++ G YRCE+CN + YR ++ + +GD++ +WV+LF A S G++A+E+
Sbjct: 501 VMEDGGCYRCERCNMTYEDCDYRYMVTMHLGDFSGQMWVSLFDEVATSFFGISAREMKVM 560
Query: 759 TEDHPA-----LKKALFTQYIFRLRAKLEHYN 785
+E+ P +++ F + +FR+++K + YN
Sbjct: 561 SEEAPGELQALIRRMYFRECLFRIKSKQDSYN 592
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 167/320 (52%), Gaps = 27/320 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK++S+ DYE+ S+ V +D S KY F +K + D +GV
Sbjct: 295 ANKQYSTNPFDYEIILDKSSEVHRAADD-----GSPKYFFNFVKISDLTLGNAYCDTIGV 349
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ S+V ++ Q +KRD LVD SV +TLWG +AE + + V+A+K+ +
Sbjct: 350 VKEVYAPSTVMVRSTQSELLKRDAVLVDDG-GSVRLTLWGPKAE-LEIESGMVLALKSIK 407
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
VSEF G ++S + S + NPDI E H+L+GW+ + + +R
Sbjct: 408 VSEFNG-ISISTTGGSQVVTNPDIAEAHELEGWYQSIGKDMQVTLPRR--------EEKR 458
Query: 186 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 245
L++E+++ L Y +V+G + + Y +C + CNKKV+ ++ G YRCE+
Sbjct: 459 RLIQEVKESDL------TYSTVQGTVMFLKEDGLWYTSCKGEGCNKKVVMEDGGCYRCER 512
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----L 300
CN + YR ++ + +GD++ +WV+LF A S G++A+E+ +E+ P +
Sbjct: 513 CNMTYEDCDYRYMVTMHLGDFSGQMWVSLFDEVATSFFGISAREMKVMSEEAPGELQALI 572
Query: 301 KKALFTQYIFRLRAKLEHYN 320
++ F + +FR+++K + YN
Sbjct: 573 RRMYFRECLFRIKSKQDSYN 592
>gi|449329996|gb|AGE96262.1| DNA replication factor a protein 1 [Encephalitozoon cuniculi]
Length = 623
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 140/512 (27%), Positives = 250/512 (48%), Gaps = 69/512 (13%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGVN + +++L G +S +++++ R+ V + + SV I ++
Sbjct: 99 LSDGVNYMK-GIFSSELTPHFEKGLVSRYSLIRPGRFSVR------SKDGSVYIYIQE-- 149
Query: 385 IKPGTEIGFKIGNPQPLNT-NTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTH 443
I+ + +IG P ++T N S Q +P N +NGV+ + P + V+
Sbjct: 150 IQAYEDCNVEIGKPVNISTGNASFSDNQASPG--NQRHTNGVNQHRRAPDEEDKKRVKRD 207
Query: 444 P--------IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATM 495
I L+P+ NKW IK RV K+ IR + N +G GK+F+ ++ D + +++
Sbjct: 208 AEDEGEFTAINMLNPFHNKWAIKGRVVMKSDIRRFTNQKGEGKVFNFEVSDGTAQVKIIC 267
Query: 496 FNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNM 555
F+D + F ++E KVY I+ T+K ANK++S+ DYE+ S+ V +D
Sbjct: 268 FSDCVDIFFPIVEVGKVYTIAKGTVKMANKQYSTNPFDYEIILDKSSEVHRAADD----- 322
Query: 556 PSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQAS 615
S KY F +K + D +GV + S+V ++ Q +KRD LVD S
Sbjct: 323 GSPKYFFNFVKISDLTLGNAYCDTIGVVKEVYAPSTVMVRSTQSELLKRDAVLVDDG-GS 381
Query: 616 VTMTLWGKEAETFDASNKPVIAVKAARVSEFQG---------------NLLLMREI---- 656
V +TLWG +AE + + V+A+K+ +VSEF G ++ E+
Sbjct: 382 VRLTLWGPKAE-LEIESGMVLALKSIKVSEFNGISISTTGGSQVVTNPDIAEAHELAGWY 440
Query: 657 ----QDQQLGMGDKAD--------------YCSVRGIIQVFRGSNTTYKACPSQDCNKKV 698
+D Q+ + + + Y +V+G + + Y +C + CNKKV
Sbjct: 441 QSIGKDMQVTLPRREEKRRLIQEVKESDLTYSTVQGTVMFLKEDGLWYTSCKGEGCNKKV 500
Query: 699 IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGES 758
+ ++ G YRCE+CN + YR ++ + +GD++ +WV+LF A S G++A+E+
Sbjct: 501 VMEDGGCYRCERCNMTYEDCDYRYMVTMHLGDFSGQMWVSLFDEVATSFFGISAREMKVM 560
Query: 759 TEDHPA-----LKKALFTQYIFRLRAKLEHYN 785
+E+ P +++ F + +FR+++K + YN
Sbjct: 561 SEEAPGELQALIRRMYFRECLFRIKSKQDSYN 592
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 166/320 (51%), Gaps = 27/320 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK++S+ DYE+ S+ V +D S KY F +K + D +GV
Sbjct: 295 ANKQYSTNPFDYEIILDKSSEVHRAADD-----GSPKYFFNFVKISDLTLGNAYCDTIGV 349
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ S+V ++ Q +KRD LVD SV +TLWG +AE + + V+A+K+ +
Sbjct: 350 VKEVYAPSTVMVRSTQSELLKRDAVLVDDG-GSVRLTLWGPKAE-LEIESGMVLALKSIK 407
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
VSEF G ++S + S + NPDI E H+L GW+ + + +R
Sbjct: 408 VSEFNG-ISISTTGGSQVVTNPDIAEAHELAGWYQSIGKDMQVTLPRR--------EEKR 458
Query: 186 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 245
L++E+++ L Y +V+G + + Y +C + CNKKV+ ++ G YRCE+
Sbjct: 459 RLIQEVKESDL------TYSTVQGTVMFLKEDGLWYTSCKGEGCNKKVVMEDGGCYRCER 512
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----L 300
CN + YR ++ + +GD++ +WV+LF A S G++A+E+ +E+ P +
Sbjct: 513 CNMTYEDCDYRYMVTMHLGDFSGQMWVSLFDEVATSFFGISAREMKVMSEEAPGELQALI 572
Query: 301 KKALFTQYIFRLRAKLEHYN 320
++ F + +FR+++K + YN
Sbjct: 573 RRMYFRECLFRIKSKQDSYN 592
>gi|357134970|ref|XP_003569087.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Brachypodium distachyon]
Length = 945
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 144/467 (30%), Positives = 217/467 (46%), Gaps = 82/467 (17%)
Query: 387 PGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIV 446
PG GF G P + S QQ P A +G V N A PR PI
Sbjct: 235 PGAGRGF--GPPGNIYGRPAQPSYQQPPPAYRNSGP--VAKNEAPPR--------VTPIS 282
Query: 447 SLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNRFHD 505
+L+PYQ WTIKARVT K+ + + NA G G +F+ DLLD GEIRA F ++F++
Sbjct: 283 ALNPYQTTWTIKARVTAKSRVTHFINASGPGTVFNFDLLDAHGGEIRAKCFKAAVDQFYN 342
Query: 506 MIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPL 565
+IE DKVY IS ++PA KKF+ +NNDY+++ ST++ C+ D+ ++P ++ F +
Sbjct: 343 LIEVDKVYLISRGAIRPAQKKFNPLNNDYDLTLDVSTSIEICSGDD-SSIPRQQFNFRQI 401
Query: 566 KTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK-- 623
IA + +D+LGV + + K +T KR++ L D S SV +T WG
Sbjct: 402 SEIANMDGGSMVDLLGVVTSVSPTVPLMKKDGNET-KKRNLQLKDMSGCSVEITFWGDFC 460
Query: 624 EAET------FDASNKPVIAVKAARVSEFQGNLL-------------------------- 651
+AE D+ + P++ +K+ RV++F G +
Sbjct: 461 DAEGQQLQSLCDSGSSPMLVLKSGRVNDFNGKSVGTISSSLIKINPDFPDAERLRQWYIT 520
Query: 652 ----------------------LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKAC 689
+ EI+ + LG DK + +V G I Y AC
Sbjct: 521 EGKNAACSSLSVATMGRTDVRKTIAEIKGENLGQSDKPAWITVIGSIFHIANDPFCYPAC 580
Query: 690 PSQ----DCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
Q CNKKV + +GM+ C+KC + YR +L + D T S + FQ +
Sbjct: 581 TMQVNGRQCNKKVTNNGDGMWYCDKCEQSSPNCEYRYLLNCQMQDHTGSTYCNAFQEAGK 640
Query: 746 SILGVTAQEV----GESTED---HPALKKALFTQYIFRLRAKLEHYN 785
I+GVTAQE+ E +D +++A ++ +L+ K E YN
Sbjct: 641 DIIGVTAQELFRIKHEEQDDVQFAEIMQRARHQLFLLKLKVKEEIYN 687
Score = 145 bits (366), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 171/341 (50%), Gaps = 27/341 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA KKF+ +NNDY+++ ST++ C+ D+ ++P ++ F + IA + +D+LG
Sbjct: 359 PAQKKFNPLNNDYDLTLDVSTSIEICSGDD-SSIPRQQFNFRQISEIANMDGGSMVDLLG 417
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK--EAET------FDASNK 116
V + + K +T KR++ L D S SV +T WG +AE D+ +
Sbjct: 418 VVTSVSPTVPLMKKDGNET-KKRNLQLKDMSGCSVEITFWGDFCDAEGQQLQSLCDSGSS 476
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTG 175
P++ +K+ RV++F G K++ SS++ +NPD P+ +L+ W+ T+ N +S T
Sbjct: 477 PMLVLKSGRVNDFNG-KSVGTISSSLIKINPDFPDAERLRQWYITEGKNAACSSLSVATM 535
Query: 176 GMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQ----DCNK 231
G + EI+ + LG DK + +V G I Y AC Q CNK
Sbjct: 536 GR----TDVRKTIAEIKGENLGQSDKPAWITVIGSIFHIANDPFCYPACTMQVNGRQCNK 591
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV- 290
KV + +GM+ C+KC + YR +L + D T S + FQ + I+GVTAQE+
Sbjct: 592 KVTNNGDGMWYCDKCEQSSPNCEYRYLLNCQMQDHTGSTYCNAFQEAGKDIIGVTAQELF 651
Query: 291 ---GESTED---HPALKKALFTQYIFRLRAKLEHYNGTKKI 325
E +D +++A ++ +L+ K E YN ++
Sbjct: 652 RIKHEEQDDVQFAEIMQRARHQLFLLKLKVKEEIYNDEARV 692
>gi|312087571|ref|XP_003145524.1| replication factor A 73 kDa subunit [Loa loa]
Length = 607
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 121/398 (30%), Positives = 194/398 (48%), Gaps = 58/398 (14%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNR 502
PI ++PY NKW I VT K +R AR K+F+ +L DE G IR F+D +
Sbjct: 178 PIKLITPYVNKWRICGVVTAKEDLRNIRTARRDMKVFNFELTDEEGGCIRIAAFDDVAEK 237
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F+ +I+K ++Y+S T+K ANK+F++ +DYE++ + + V+PC + E P +
Sbjct: 238 FYSIIQKGSMFYVSGGTVKQANKRFNTTGHDYEITIRNDSEVLPCLDREKIEQPKLSLSI 297
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
V L +A E IDV+ + ++ VT + KRDI L+D S+ +T+T WG
Sbjct: 298 VRLCNVAN-HVGEPIDVIAIAEKVNDIVEVTARNTGAQLEKRDIILIDASETEITLTFWG 356
Query: 623 KEAETFDAS-NKPVIAVKAARVSEFQGNLLL----------------------------- 652
++A T+D I +K A V E+ GNL L
Sbjct: 357 EQARTYDKEIEGQTIGIKGAFVKEYNGNLSLSIGNSSRIELNMDCAETANLYRWYRETRP 416
Query: 653 ---------------MREIQDQQLGM----GDKADYCSVRGIIQVFRGSNTTYKACPSQD 693
R I+ ++G +K + +V +I + YK+C +
Sbjct: 417 SVQARNLTTAGLTRDFRIIRLSEVGALGRDSEKGIFFNVTAMISSLKADGALYKSCGTNG 476
Query: 694 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 753
C KKVI+ NN YRCEKC+ + + Y L++ V I D++ S WVT+F+++A +L A+
Sbjct: 477 CKKKVIELNN-QYRCEKCDITLDKYKYVLLMTVEISDFSGSHWVTVFEDKAVKLLKNDAE 535
Query: 754 EVGESTED------HPALKKALFTQYIFRLRAKLEHYN 785
++G+ ++ + F +Y FR+RAK E YN
Sbjct: 536 QLGQLLDNDLLDEYNEVFNAVRFREYTFRIRAKSEFYN 573
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 169/328 (51%), Gaps = 15/328 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F++ +DYE++ + + V+PC + E P + V L +A E IDV+ +
Sbjct: 258 ANKRFNTTGHDYEITIRNDSEVLPCLDREKIEQPKLSLSIVRLCNVAN-HVGEPIDVIAI 316
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS-NKPVIAVKAA 124
++ VT + KRDI L+D S+ +T+T WG++A T+D I +K A
Sbjct: 317 AEKVNDIVEVTARNTGAQLEKRDIILIDASETEITLTFWGEQARTYDKEIEGQTIGIKGA 376
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGN 184
V E+ G +LS+ SS + LN D E L W+ TR P Q G +
Sbjct: 377 FVKEYNGNLSLSIGNSSRIELNMDCAETANLYRWYR---ETR--PSVQARNLTTAGLTRD 431
Query: 185 LLLMREIQDQQLGM-GDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
++R + LG +K + +V +I + YK+C + C KKVI+ NN YRC
Sbjct: 432 FRIIRLSEVGALGRDSEKGIFFNVTAMISSLKADGALYKSCGTNGCKKKVIELNN-QYRC 490
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED------H 297
EKC+ + + Y L++ V I D++ S WVT+F+++A +L A+++G+ ++ +
Sbjct: 491 EKCDITLDKYKYVLLMTVEISDFSGSHWVTVFEDKAVKLLKNDAEQLGQLLDNDLLDEYN 550
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
F +Y FR+RAK E YNG +KI
Sbjct: 551 EVFNAVRFREYTFRIRAKSEFYNGEEKI 578
>gi|396082253|gb|AFN83863.1| DNA replication factor A protein 1 [Encephalitozoon romaleae
SJ-2008]
Length = 573
Score = 195 bits (496), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 142/511 (27%), Positives = 252/511 (49%), Gaps = 66/511 (12%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGV+ + +++L G +S++++++ R+ V + + SV I ++
Sbjct: 48 LSDGVSYMK-GIFSSELTPHFEKGLVSKYSLIKPGRFSVR------SKDGSVYIYIQE-- 98
Query: 385 IKPGTEIGFKIGNPQPLNT-NTDNSSTQQTPA-ATNTNGSNGVH------NNVAIPRQAS 436
I+ + +IG P ++T N S Q +P GSN H + R+ +
Sbjct: 99 IQEYEDCNVEIGKPVNISTGNASFSDNQPSPGNPRRIEGSNQQHCRPTDEGDKKRVRRDA 158
Query: 437 APVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMF 496
+ I L+P+ NKWTIK RV K+ IR + N +G GK+F+ ++ D + +++ F
Sbjct: 159 DDEGEFVAINMLNPFYNKWTIKGRVVVKSDIRRFTNHKGEGKVFNFEISDGTAQVKIICF 218
Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
+D + F ++E KVY IS T+K ANK++S+ DYE+ + V C D+ P
Sbjct: 219 SDCVDIFFPIVEVGKVYIISKGTVKTANKQYSTNPFDYEIILDKGSEV-RCAADD--GSP 275
Query: 557 SVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
+ FV + ++ S DV+GV + S+V ++ Q +KRD LVD+S SV
Sbjct: 276 RYFFNFVKISDLSLGST--YCDVIGVVKEVYSPSTVMIRSTQNELLKRDAILVDES-GSV 332
Query: 617 TMTLWGKEAETFDASNKPVIAVKAARVSEFQG---------NLLLMREI----------- 656
+TLWG +AE D V+ +K+ +VSEF G +++ +I
Sbjct: 333 RLTLWGPKAE-IDIEGGMVLGLKSIKVSEFNGITISTTGGSQVVVNPDIPEAHELAGWYQ 391
Query: 657 ---QDQQLGMGDKAD--------------YCSVRGIIQVFRGSNTTYKACPSQDCNKKVI 699
+D Q+ + K + Y +++G + + Y +C + CNKKV
Sbjct: 392 SIGKDMQVSLPRKEEKRRLIQEVKENELAYSTIQGTVMFLKEDALWYTSCKGEGCNKKVA 451
Query: 700 DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGEST 759
+ +G YRCE+CN + YR ++ + +GD+T +WV+LF A G++A+E+ E +
Sbjct: 452 MEESGNYRCERCNMTYEDCNYRYMVSMHLGDFTGQIWVSLFDEAASGFFGISAREMKEMS 511
Query: 760 EDHPA-----LKKALFTQYIFRLRAKLEHYN 785
E+ P +++ F + +FR+++K + YN
Sbjct: 512 EESPTELQTLIRRMYFRECLFRIKSKQDSYN 542
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 187/353 (52%), Gaps = 40/353 (11%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK++S+ DYE+ + V C D+ P + FV + ++ S DV+GV
Sbjct: 245 ANKQYSTNPFDYEIILDKGSEV-RCAADD--GSPRYFFNFVKISDLSLGST--YCDVIGV 299
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ S+V ++ Q +KRD LVD+S SV +TLWG +AE D V+ +K+ +
Sbjct: 300 VKEVYSPSTVMIRSTQNELLKRDAILVDES-GSVRLTLWGPKAE-IDIEGGMVLGLKSIK 357
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST-----QTNTRFEPVSQRTGGMGGG 180
VSEF G T+S + S + +NPDIPE H+L GW+ + Q + + +R
Sbjct: 358 VSEFNG-ITISTTGGSQVVVNPDIPEAHELAGWYQSIGKDMQVSLPRKEEKRR------- 409
Query: 181 AAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGM 240
L++E+++ +L Y +++G + + Y +C + CNKKV + +G
Sbjct: 410 ------LIQEVKENELA------YSTIQGTVMFLKEDALWYTSCKGEGCNKKVAMEESGN 457
Query: 241 YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA- 299
YRCE+CN + YR ++ + +GD+T +WV+LF A G++A+E+ E +E+ P
Sbjct: 458 YRCERCNMTYEDCNYRYMVSMHLGDFTGQIWVSLFDEAASGFFGISAREMKEMSEESPTE 517
Query: 300 ----LKKALFTQYIFRLRAKLEHYNGTKKIP-DGVNINSFAML--ATQLNDII 345
+++ F + +FR+++K + YN ++ G+N+ + +L + +L D+I
Sbjct: 518 LQTLIRRMYFRECLFRIKSKQDSYNDELRMRYSGLNVITLDILKESKRLLDVI 570
>gi|297733862|emb|CBI15109.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 144/520 (27%), Positives = 244/520 (46%), Gaps = 78/520 (15%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AM + + I G + ++Q+ Y ++ + S LI+ + + P E+ FK
Sbjct: 55 AMFPSSFSSEINSGNIQNLGLIQVIDYTLNDIPS---KQEKYLIVTKCEAVSPALEVEFK 111
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNK 454
+ T Q+ A + N H N+A P A + HP+VSL+PYQ
Sbjct: 112 T---EVKRTGIFLKPKQEIVAKSAAQIVNEQHGNMA-PAARMAMTRRVHPLVSLNPYQGN 167
Query: 455 WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNRFHDMIEKDKVY 513
WTIK R+TNK +R + NARG G +F+++L DE G +I+ATMFN+ +F++ + KVY
Sbjct: 168 WTIKVRLTNKGTMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYEKFQLGKVY 227
Query: 514 YISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE-IS 572
YIS LK ANK+F ++ NDYEM+ ++ V + +E +P K+ FV ++ + ++
Sbjct: 228 YISKGALKVANKQFKTVQNDYEMTLNENSEVEEASNEETF-IPEAKFKFVEIEELGPYVN 286
Query: 573 PDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ET 627
E +DV+GV + S+ K+N KRDIT+ D+++ +V ++LW A E
Sbjct: 287 GKELVDVIGVVQSVSPTMSIRRKSNNDIVPKRDITIADKTKKTVVVSLWNDHATNVGQEL 346
Query: 628 FDASNK-PVIAVKAARVSEFQG--------NLLL----------MREIQDQQ------LG 662
D ++K P++A+K+ +V +FQG +++L +R D +
Sbjct: 347 LDNADKFPIVAIKSLKVGDFQGVSLSTLSKSIVLVNPDTPESKKLRSWYDSEGKGASMAS 406
Query: 663 MGDKADYCSVRGIIQVF--RGSNTTYKACPSQDCNKKVI------------DQNNGMYRC 708
+G S G+ ++ R S + + PS +K DQ C
Sbjct: 407 IGSDISPSSKGGVKSMYYDRVSLSHVTSNPSLGEDKPSFFSIRAYISFIKPDQTMWYRAC 466
Query: 709 EKCNKEF-----------------NTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVT 751
+ CNK+ + + R I+ V + D + W++LF +AE + G +
Sbjct: 467 KTCNKKVTDAIGSGYWCEGCQKNDDECSLRYIMVVKVSDASGEAWLSLFNEQAERMFGCS 526
Query: 752 AQEV-------GESTEDHPALKKALFTQYIFRLRAKLEHY 784
A E+ GE LK+A++ ++FR+ Y
Sbjct: 527 ADELDKLKSQEGEENLFQQKLKEAIWVPHLFRISVAQHEY 566
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 173/342 (50%), Gaps = 30/342 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE-ISPDENIDVLG 64
ANK+F ++ NDYEM+ ++ V + +E +P K+ FV ++ + ++ E +DV+G
Sbjct: 237 ANKQFKTVQNDYEMTLNENSEVEEASNEETF-IPEAKFKFVEIEELGPYVNGKELVDVIG 295
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ETFDASNK-PV 118
V + S+ K+N KRDIT+ D+++ +V ++LW A E D ++K P+
Sbjct: 296 VVQSVSPTMSIRRKSNNDIVPKRDITIADKTKKTVVVSLWNDHATNVGQELLDNADKFPI 355
Query: 119 IAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ--------TNTRFEPV 170
+A+K+ +V +FQG +LS S VL +NPD PE KL+ W+ ++ + P
Sbjct: 356 VAIKSLKVGDFQGVSLSTLSKSIVL-VNPDTPESKKLRSWYDSEGKGASMASIGSDISPS 414
Query: 171 SQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDC 229
S+ GG+ + L + LG DK + S+R I + T Y+AC + C
Sbjct: 415 SK--GGVKSMYYDRVSLSHVTSNPSLG-EDKPSFFSIRAYISFIKPDQTMWYRAC--KTC 469
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
NKKV D Y CE C K + + R I+ V + D + W++LF +AE + G +A E
Sbjct: 470 NKKVTDAIGSGYWCEGCQKNDDECSLRYIMVVKVSDASGEAWLSLFNEQAERMFGCSADE 529
Query: 290 V-------GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKK 324
+ GE LK+A++ ++FR+ Y K+
Sbjct: 530 LDKLKSQEGEENLFQQKLKEAIWVPHLFRISVAQHEYMNEKR 571
>gi|452819200|gb|EME26268.1| replication factor A1 [Galdieria sulphuraria]
Length = 648
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 155/567 (27%), Positives = 251/567 (44%), Gaps = 128/567 (22%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
+ML+TQLN ++ + + +V++ Y+V+ V+ + ++I+L L +P T K
Sbjct: 60 SMLSTQLNALVREQKVQTGCLVRLLEYVVNDVA-----QKRIIIVLNL---EPVTGPLEK 111
Query: 395 IGNP-----------------------QP--LNTNTDNSSTQQTPAATNTNGSNGVHNNV 429
IGNP QP + ++TD Q P N +N
Sbjct: 112 IGNPVNVEQAQNVQTGLGSKMRDNLSEQPSRVPSSTDLKQPQTLPEFPNKITRESEKHNA 171
Query: 430 AIPRQA------------------SAPVVQTHP-----------IVSLSPYQNKWTIKAR 460
++P A S PVV+ P I SL+PYQNKW IK R
Sbjct: 172 SVPLSANSVNIQSNRTQSFHVKSESGPVVKMEPFVGSNLEPVQSIASLNPYQNKWIIKGR 231
Query: 461 VTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTL 520
V+++ IR + NA+G G +FS +++D + I+ T F + + + +IE KVY IS L
Sbjct: 232 VSSRGEIRHYQNAKGEGSVFSFEIMDSTASIKVTAFRENASSLYKLIEIGKVYRISKGVL 291
Query: 521 KPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVL 580
KPA+K+F+ + +YEM ++T V+P ++VG +P+V + F + + I + DVL
Sbjct: 292 KPADKRFNKTSFEYEMIADNNTEVVPV--EDVGEVPNVIFHFTKIANLENIVAGQFCDVL 349
Query: 581 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNK--PVIAV 638
G+ D +ELSSV +T T KR + L+D S ++ +TLW AE S++ P++
Sbjct: 350 GIVKDVSELSSVVSRTTGITLAKRTVVLMDDSLKTIRLTLWKDIAENLLHSSEGNPILLC 409
Query: 639 KAARVSEFQG---------------NLLLMREIQD-----------------QQLGMGDK 666
K R +F G ++ E++ L +G+
Sbjct: 410 KGVRRGDFNGISLDATVQSCFEVNPDIAEAHELRGWYETTGKHQETSSLEGATSLSLGNT 469
Query: 667 ADYCSV---------------RGIIQVFRG--------SNTTYKACPSQDCNKKVIDQNN 703
+ ++ RG+ + RG Y A P D NKKV +
Sbjct: 470 KERKTILQASEEDIPKLINDPRGVQFIVRGYLHYIRKEGTLWYTASP--DDNKKVTKLDE 527
Query: 704 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP 763
+ C+ KE++ YR IL V I D T S+ F + ++G +A+E+ E
Sbjct: 528 NRWVCDATGKEYSYCNYRYILSVAIQDATGSLNANAFDDVGSRLIGRSAEELAAIYERDR 587
Query: 764 A-----LKKALFTQYIFRLRAKLEHYN 785
A + LF +IFR+RAK +N
Sbjct: 588 AEFDAIIDDVLFKPFIFRIRAKQNTWN 614
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 102/329 (31%), Positives = 163/329 (49%), Gaps = 20/329 (6%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA+K+F+ + +YEM ++T V+P ++VG +P+V + F + + I + DVLG
Sbjct: 293 PADKRFNKTSFEYEMIADNNTEVVPV--EDVGEVPNVIFHFTKIANLENIVAGQFCDVLG 350
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNK--PVIAVK 122
+ D +ELSSV +T T KR + L+D S ++ +TLW AE S++ P++ K
Sbjct: 351 IVKDVSELSSVVSRTTGITLAKRTVVLMDDSLKTIRLTLWKDIAENLLHSSEGNPILLCK 410
Query: 123 AARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGG----MG 178
R +F G +L ++ S +NPDI E H+L+GW+ +T + + S G +G
Sbjct: 411 GVRRGDF-NGISLDATVQSCFEVNPDIAEAHELRGWY--ETTGKHQETSSLEGATSLSLG 467
Query: 179 GGAAGNLLLMREIQDQQLGMGD-KADYCSVRGIIQVFRGSNTT-YKACPSQDCNKKVIDQ 236
+L +D + D + VRG + R T Y A P D NKKV
Sbjct: 468 NTKERKTILQASEEDIPKLINDPRGVQFIVRGYLHYIRKEGTLWYTASP--DDNKKVTKL 525
Query: 237 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 296
+ + C+ KE++ YR IL V I D T S+ F + ++G +A+E+ E
Sbjct: 526 DENRWVCDATGKEYSYCNYRYILSVAIQDATGSLNANAFDDVGSRLIGRSAEELAAIYER 585
Query: 297 HPA-----LKKALFTQYIFRLRAKLEHYN 320
A + LF +IFR+RAK +N
Sbjct: 586 DRAEFDAIIDDVLFKPFIFRIRAKQNTWN 614
>gi|307193861|gb|EFN76495.1| Replication protein A 70 kDa DNA-binding subunit [Harpegnathos
saltator]
Length = 489
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 131/411 (31%), Positives = 208/411 (50%), Gaps = 68/411 (16%)
Query: 423 NGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSI 482
NG N A+ + + V T K IKARVTNK+ I+EW N +G KLFS+
Sbjct: 65 NGTLTNYAVFKVSDYKVSST--------IDEKQAIKARVTNKSSIKEWKNKKG--KLFSM 114
Query: 483 DLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHST 542
L D S EI+ FND + ++ +E +KVY+ISN LK ++++++ + N YE+ T T
Sbjct: 115 HLHDNSDEIKCVAFND---KLYNNVENNKVYHISNYELKDSDRRYNKLKNQYEIIITDDT 171
Query: 543 TVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYM 602
+ ++D ++PS+ + F P+ + + IDVLGV + + L + T ++N+
Sbjct: 172 RIKESHDD--ADIPSIHFDFCPISQVENKQIYDTIDVLGVVV-KSNLKTFTKQSNEN--F 226
Query: 603 KRDITLVDQSQ---ASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL-------- 651
KRDI +VD SQ A + +TLWG++A+ FD +N ++A+K ARV EF G L
Sbjct: 227 KRDIDIVDNSQPSGARICVTLWGQQAQEFDCNNGTILAIKGARVDEFNGKRLTIINSPER 286
Query: 652 --------------------------------LMREIQDQQLGMGDKADYCSVRGIIQVF 679
+RE+ + LG+ +++ V II
Sbjct: 287 STIIRKDPDLPEARVLLEWYRSYWSKFNCTFRTIRELTEATLGIT--SNFFKVMAIIDSI 344
Query: 680 RGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTL 739
N YKACP +C KK+ + YRC+ C +++ F Y L+L ++I D T + VT
Sbjct: 345 HIENCIYKACPKDNCKKKLTELAFEKYRCDSCKRDYLNFKYCLLLNMIISDITGNHRVTA 404
Query: 740 FQNEAESILGVTAQEVGESTE-DHPA----LKKALFTQYIFRLRAKLEHYN 785
F AE IL ++AQE+ E D+ A + +A+ +Y F L+ E ++
Sbjct: 405 FDEVAEKILEISAQELVRLKENDNNAYIRKIDEAVLKRYTFYLKGIAEVFH 455
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 100/333 (30%), Positives = 174/333 (52%), Gaps = 39/333 (11%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
++++++ + N YE+ T T + ++D ++PS+ + F P+ + + IDVLGV
Sbjct: 152 SDRRYNKLKNQYEIIITDDTRIKESHDD--ADIPSIHFDFCPISQVENKQIYDTIDVLGV 209
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQ---ASVTMTLWGKEAETFDASNKPVIAVK 122
+ + L + T ++N+ KRDI +VD SQ A + +TLWG++A+ FD +N ++A+K
Sbjct: 210 VV-KSNLKTFTKQSNEN--FKRDIDIVDNSQPSGARICVTLWGQQAQEFDCNNGTILAIK 266
Query: 123 AARVSEFQGGKTL---SLSMSSVLSLNPDIPECHKLQGWFST---QTNTRFEPVSQRTGG 176
ARV EF G + S S+++ +PD+PE L W+ + + N F +
Sbjct: 267 GARVDEFNGKRLTIINSPERSTIIRKDPDLPEARVLLEWYRSYWSKFNCTFRTI------ 320
Query: 177 MGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 236
RE+ + LG+ +++ V II N YKACP +C KK+ +
Sbjct: 321 ------------RELTEATLGIT--SNFFKVMAIIDSIHIENCIYKACPKDNCKKKLTEL 366
Query: 237 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE- 295
YRC+ C +++ F Y L+L ++I D T + VT F AE IL ++AQE+ E
Sbjct: 367 AFEKYRCDSCKRDYLNFKYCLLLNMIISDITGNHRVTAFDEVAEKILEISAQELVRLKEN 426
Query: 296 DHPA----LKKALFTQYIFRLRAKLEHYNGTKK 324
D+ A + +A+ +Y F L+ E ++G ++
Sbjct: 427 DNNAYIRKIDEAVLKRYTFYLKGIAEVFHGQRR 459
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSG 365
+ DG+ IN +AML+T+LN + +GTL+ + + ++ Y VS
Sbjct: 43 VSDGLRINQYAMLSTELNRLFENGTLTNYAVFKVSDYKVSS 83
>gi|440797647|gb|ELR18729.1| replication factora protein 1 (rpa1) subfamily protein
[Acanthamoeba castellanii str. Neff]
Length = 646
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 125/413 (30%), Positives = 198/413 (47%), Gaps = 85/413 (20%)
Query: 430 AIPRQASAPVVQTHP----------IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
A P +++ P +Q P + L+PY ++WTI+ +VT+K ++ + ARG GKL
Sbjct: 216 ASPFRSTPPRLQASPKADDVGVITSVADLNPYLSRWTIRVKVTSKGDVKHYQTARGPGKL 275
Query: 480 FSIDLLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSF 538
+IDL+D +G EIRA MFN+ ++F +I++ VY I TLK ANKKFS INNDYE++
Sbjct: 276 LAIDLMDVAGTEIRAVMFNEAVDKFESIIQQGNVYSIEKATLKVANKKFSHINNDYEITI 335
Query: 539 THSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQ 598
+ ++ V E P + F PL I E D+ ++ + +
Sbjct: 336 SPASVV----EAVADTFPGLVCHFAPLSDIREKKADDLLNTIDL---------------- 375
Query: 599 KTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLL------ 652
KR + L + + SV +TLWG+ A +F+ S V+ +K+ +VSE+Q +L
Sbjct: 376 ---EKRSLALSSR-EVSVELTLWGQAAASFEGSAGDVLGLKSVKVSEWQETFVLCATERM 431
Query: 653 ---MREIQDQQLGMGDKADYCSVR------------------------------------ 673
M + LG + Y S R
Sbjct: 432 KPAMGYYPGKSLGATQASSYGSSRLFPARRKHKAEAVKTIQEIKALDVSGGSAFVVVNAT 491
Query: 674 -GIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWT 732
I+ NT Y++CP++ C +KV+D G YRCE CN ++ YR ++ V + D T
Sbjct: 492 VAFIKYDISGNTYYRSCPNESCARKVVDV-GGSYRCEMCNASYDHCQYRYVMSVRLIDHT 550
Query: 733 NSVWVTLFQNEAESILGVTAQEVG---ESTEDHPALKKALFTQYIFRLRAKLE 782
+S+W T+F + ++LGV A EV E+ D AL++ + + + R KL
Sbjct: 551 DSLWATVFNDVGATLLGVPASEVADICENRSDQRALEEVMNRGLLHKWRLKLR 603
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 150/321 (46%), Gaps = 46/321 (14%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANKKFS INNDYE++ + ++ V E P + F PL I E D+ ++ + +
Sbjct: 320 ANKKFSHINNDYEITISPASVV----EAVADTFPGLVCHFAPLSDIREKKADDLLNTIDL 375
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
KR + L + + SV +TLWG+ A +F+ S V+ +K+ +
Sbjct: 376 -------------------EKRSLALSSR-EVSVELTLWGQAAASFEGSAGDVLGLKSVK 415
Query: 126 VSEFQGGKTLSLS--MSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAG 183
VSE+Q L + M + P Q S+ ++R P ++
Sbjct: 416 VSEWQETFVLCATERMKPAMGYYPG-KSLGATQA--SSYGSSRLFPARRKHKAEA----- 467
Query: 184 NLLLMREIQD-QQLGMGDKADYCSVRGIIQVFR---GSNTTYKACPSQDCNKKVIDQNNG 239
++ IQ+ + L + + + V + + NT Y++CP++ C +KV+D G
Sbjct: 468 ----VKTIQEIKALDVSGGSAFVVVNATVAFIKYDISGNTYYRSCPNESCARKVVDVG-G 522
Query: 240 MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG---ESTED 296
YRCE CN ++ YR ++ V + D T+S+W T+F + ++LGV A EV E+ D
Sbjct: 523 SYRCEMCNASYDHCQYRYVMSVRLIDHTDSLWATVFNDVGATLLGVPASEVADICENRSD 582
Query: 297 HPALKKALFTQYIFRLRAKLE 317
AL++ + + + R KL
Sbjct: 583 QRALEEVMNRGLLHKWRLKLR 603
>gi|393910914|gb|EFO18545.2| replication factor A 73 kDa subunit [Loa loa]
Length = 612
Score = 193 bits (490), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 120/403 (29%), Positives = 194/403 (48%), Gaps = 63/403 (15%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNR 502
PI ++PY NKW I VT K +R AR K+F+ +L DE G IR F+D +
Sbjct: 178 PIKLITPYVNKWRICGVVTAKEDLRNIRTARRDMKVFNFELTDEEGGCIRIAAFDDVAEK 237
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F+ +I+K ++Y+S T+K ANK+F++ +DYE++ + + V+PC + E P +
Sbjct: 238 FYSIIQKGSMFYVSGGTVKQANKRFNTTGHDYEITIRNDSEVLPCLDREKIEQPKLSLSI 297
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
V L +A E IDV+ + ++ VT + KRDI L+D S+ +T+T WG
Sbjct: 298 VRLCNVAN-HVGEPIDVIAIAEKVNDIVEVTARNTGAQLEKRDIILIDASETEITLTFWG 356
Query: 623 KEAETFDAS-NKPVIAVKAARVSEFQGNLLL----------------------------- 652
++A T+D I +K A V E+ G+L L
Sbjct: 357 EQARTYDKEIEGQTIGIKGAFVKEYNGSLSLSIGNSSRIELNMDCAETANLYRWYRETRP 416
Query: 653 --------------------MREIQDQQLGM----GDKADYCSVRGIIQVFRGSNTTYKA 688
R I+ ++G +K + +V +I + YK+
Sbjct: 417 SVQARNLTTAGLSSDNYARDFRIIRLSEVGALGRDSEKGIFFNVTAMISSLKADGALYKS 476
Query: 689 CPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL 748
C + C KKVI+ NN YRCEKC+ + + Y L++ V I D++ S WVT+F+++A +L
Sbjct: 477 CGTNGCKKKVIELNN-QYRCEKCDITLDKYKYVLLMTVEISDFSGSHWVTVFEDKAVKLL 535
Query: 749 GVTAQEVGESTED------HPALKKALFTQYIFRLRAKLEHYN 785
A+++G+ ++ + F +Y FR+RAK E YN
Sbjct: 536 KNDAEQLGQLLDNDLLDEYNEVFNAVRFREYTFRIRAKSEFYN 578
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 172/329 (52%), Gaps = 12/329 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F++ +DYE++ + + V+PC + E P + V L +A E IDV+ +
Sbjct: 258 ANKRFNTTGHDYEITIRNDSEVLPCLDREKIEQPKLSLSIVRLCNVAN-HVGEPIDVIAI 316
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS-NKPVIAVKAA 124
++ VT + KRDI L+D S+ +T+T WG++A T+D I +K A
Sbjct: 317 AEKVNDIVEVTARNTGAQLEKRDIILIDASETEITLTFWGEQARTYDKEIEGQTIGIKGA 376
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGG-GAAG 183
V E+ G +LS+ SS + LN D E L W+ +T + + T G+ A
Sbjct: 377 FVKEYNGSLSLSIGNSSRIELNMDCAETANLYRWYR-ETRPSVQARNLTTAGLSSDNYAR 435
Query: 184 NLLLMREIQDQQLGM-GDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
+ ++R + LG +K + +V +I + YK+C + C KKVI+ NN YR
Sbjct: 436 DFRIIRLSEVGALGRDSEKGIFFNVTAMISSLKADGALYKSCGTNGCKKKVIELNN-QYR 494
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED------ 296
CEKC+ + + Y L++ V I D++ S WVT+F+++A +L A+++G+ ++
Sbjct: 495 CEKCDITLDKYKYVLLMTVEISDFSGSHWVTVFEDKAVKLLKNDAEQLGQLLDNDLLDEY 554
Query: 297 HPALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ F +Y FR+RAK E YNG +KI
Sbjct: 555 NEVFNAVRFREYTFRIRAKSEFYNGEEKI 583
>gi|326484265|gb|EGE08275.1| replication factor A 1 [Trichophyton equinum CBS 127.97]
Length = 538
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/350 (35%), Positives = 190/350 (54%), Gaps = 14/350 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+FS++NNDYE++F T V+ ED+ ++P +++ F L + I IDVLG+
Sbjct: 188 AKKEFSNVNNDYELTFDRDT-VVEKAEDQ-NDVPQIRFNFTSLGNLQSIDKGTTIDVLGI 245
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D S VT KT K Y KR++TLVD S SV +T+WG A FD + V+A K +
Sbjct: 246 LKDVDATSQVTSKTTGKPYDKRELTLVDNSGFSVRLTVWGNTATNFDTPPESVVAFKGVK 305
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRTGGMGGGAAGN 184
VS+F GG+TLSL S ++++PDI E H+L+GW+ Q + F S T G GGG+
Sbjct: 306 VSDF-GGRTLSLLSSGTVTVDPDIEEAHRLKGWYDAQGKSNSFTAYSSDTTGGGGGSWPT 364
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDC-NKKVIDQNNGMYRC 243
+ EI+D+++ D + S++ + + N Y ACP++ C NKKV + + C
Sbjct: 365 FKTISEIRDEEIPSADSFESFSLKATV-IHVKDNLCYPACPNEACKNKKVTRGDLDQWHC 423
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPAL--- 300
E+C + + YR IL + D T +W++ F + I G+TA E+ + ED A
Sbjct: 424 ERCERSYANPKYRYILSLNACDHTGQIWLSCFDEAGQMIFGMTADELMKIKEDDDAAANE 483
Query: 301 --KKALFTQYIFRLRAKLEHYNGTKKIPDGVNINS---FAMLATQLNDII 345
K A + + F+ RAKL+ Y ++ V + +A A QL+ +I
Sbjct: 484 ITKGATYCTWNFKCRAKLDTYQEQQRTRYNVIAATPIDYATEADQLSKLI 533
Score = 165 bits (418), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 143/517 (27%), Positives = 223/517 (43%), Gaps = 118/517 (22%)
Query: 330 NINSFA--MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKP 387
++N F ML TQLN +TDG L + V++ + VS V + +LII+ L ++
Sbjct: 48 DVNHFVRTMLPTQLNSYVTDGILRRGSFVRLTNFQVSVVKG-----KHLLIIMGLEVLSA 102
Query: 388 GTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVS 447
E +IG+P+PL + + Q+ T SN +N AP QTH
Sbjct: 103 LGE-AERIGDPKPLEPKSGDEMGGQS----TTLSSNEFYN---------AP--QTHN--- 143
Query: 448 LSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMI 507
P Q + ++R + T + +FSI+ L + T+
Sbjct: 144 -PPQQFQNIQRSRPSGMT---------SNANIFSIEALSPFANNKWTI------------ 181
Query: 508 EKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKT 567
LK A K+FS++NNDYE++F T V+ ED+ ++P +++ F L
Sbjct: 182 ---------KARLKMAKKEFSNVNNDYELTFDRDT-VVEKAEDQ-NDVPQIRFNFTSLGN 230
Query: 568 IAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET 627
+ I IDVLG+ D S VT KT K Y KR++TLVD S SV +T+WG A
Sbjct: 231 LQSIDKGTTIDVLGILKDVDATSQVTSKTTGKPYDKRELTLVDNSGFSVRLTVWGNTATN 290
Query: 628 FDASNKPVIAVKAARVSEFQGNLL------------------------------------ 651
FD + V+A K +VS+F G L
Sbjct: 291 FDTPPESVVAFKGVKVSDFGGRTLSLLSSGTVTVDPDIEEAHRLKGWYDAQGKSNSFTAY 350
Query: 652 ----------------LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDC- 694
+ EI+D+++ D + S++ + + N Y ACP++ C
Sbjct: 351 SSDTTGGGGGSWPTFKTISEIRDEEIPSADSFESFSLKATV-IHVKDNLCYPACPNEACK 409
Query: 695 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 754
NKKV + + CE+C + + YR IL + D T +W++ F + I G+TA E
Sbjct: 410 NKKVTRGDLDQWHCERCERSYANPKYRYILSLNACDHTGQIWLSCFDEAGQMIFGMTADE 469
Query: 755 VGESTEDHPAL-----KKALFTQYIFRLRAKLEHYNK 786
+ + ED A K A + + F+ RAKL+ Y +
Sbjct: 470 LMKIKEDDDAAANEITKGATYCTWNFKCRAKLDTYQE 506
>gi|395840382|ref|XP_003793039.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Otolemur garnettii]
Length = 475
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/254 (41%), Positives = 148/254 (58%), Gaps = 29/254 (11%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ LS I QI ++IV+ + G R V+I++EL +
Sbjct: 46 MSDGLNTLSSFMLATQLNPLVEQERLSSNCICQINQFIVNTLKDG----RRVVILMELEV 101
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNT---------NGSNGVHNNVA----- 430
+K +G KIGNP P N +PA + NGS G+ + V+
Sbjct: 102 LKSAEAVGLKIGNPVPYNEGHGQQQVVPSPATAASPSTSRPQPQNGSLGMGSAVSKSFGA 161
Query: 431 -----------IPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
+P + + PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKL
Sbjct: 162 SKTFGKPGGMSLPNTSGGTQAKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKL 221
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FS++L+D+SGEIRAT FND+ ++F +IE +KVYY + TLK ANK+FS++ NDYEM+F+
Sbjct: 222 FSVELVDQSGEIRATAFNDQVDKFFPLIEVNKVYYFTKGTLKIANKQFSAVKNDYEMTFS 281
Query: 540 HSTTVIPCNEDEVG 553
+ T VG
Sbjct: 282 NDTXXSDLKSGGVG 295
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 97/158 (61%), Gaps = 6/158 (3%)
Query: 173 RTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKK 232
++GG+GG N + E++ + LG GDKADY S + R N+ Y+A P+QDCNKK
Sbjct: 290 KSGGVGGSNT-NWKTLNEVKSENLGQGDKADYFSSVATVVYLRKENSMYQAYPTQDCNKK 348
Query: 233 VIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE 292
VIDQ NG+YRCEKC+ EF F YR+IL V I D+ ++ WVT FQ AE+ILG +GE
Sbjct: 349 VIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQDNQWVTCFQESAEAILGQNTAYLGE 408
Query: 293 STEDH-----PALKKALFTQYIFRLRAKLEHYNGTKKI 325
E + + A F + FR+R KLE+YN +I
Sbjct: 409 LKEKNEQAFEEVFQNANFRSFTFRIRVKLENYNDESRI 446
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 92/153 (60%), Gaps = 5/153 (3%)
Query: 638 VKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKK 697
+K+ V N + E++ + LG GDKADY S + R N+ Y+A P+QDCNKK
Sbjct: 289 LKSGGVGGSNTNWKTLNEVKSENLGQGDKADYFSSVATVVYLRKENSMYQAYPTQDCNKK 348
Query: 698 VIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE 757
VIDQ NG+YRCEKC+ EF F YR+IL V I D+ ++ WVT FQ AE+ILG +GE
Sbjct: 349 VIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQDNQWVTCFQESAEAILGQNTAYLGE 408
Query: 758 STEDH-----PALKKALFTQYIFRLRAKLEHYN 785
E + + A F + FR+R KLE+YN
Sbjct: 409 LKEKNEQAFEEVFQNANFRSFTFRIRVKLENYN 441
>gi|170580146|ref|XP_001895135.1| replication factor A 73 kDa subunit [Brugia malayi]
gi|158598024|gb|EDP36015.1| replication factor A 73 kDa subunit, putative [Brugia malayi]
Length = 613
Score = 189 bits (480), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 131/460 (28%), Positives = 212/460 (46%), Gaps = 72/460 (15%)
Query: 396 GNP---QPLNTNTDNSSTQQTPAATNTNGSNGVHN------NVAIPRQASAPVVQTHPIV 446
GNP + LN N + +T+ + GS N + R A+ PI
Sbjct: 122 GNPNDYRGLNPNANMHNTRPELRSPQKGGSTSGQNTPLRYGGSSSRRLANLVGQNLTPIK 181
Query: 447 SLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNRFHD 505
++PY NKW I VT K +R R K+F+ +L DE G IR F+D F+
Sbjct: 182 LITPYVNKWRICGVVTAKEDLRNIRTVRRDMKVFNFELTDEEGGCIRIAAFDDVAEEFYS 241
Query: 506 MIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPL 565
+I+K ++Y+S T+K ANK+F++ +DYE++ + V PC + E P + V L
Sbjct: 242 IIQKGSMFYVSGGTVKQANKRFNTTGHDYEITIRSDSEVSPCLDREKIEQPKLSLSIVRL 301
Query: 566 KTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA 625
+A E++D++ + ++ VT + KRDI L+D S+ +T+T WG++A
Sbjct: 302 CNVAN-HVGESVDIIAIVEKVNDIMQVTARNTGAQLEKRDIVLIDASETEITLTFWGEQA 360
Query: 626 ETFDAS-NKPVIAVKAARVSEFQGNLLL-----------------------MRE----IQ 657
+D I +K A V EF G+L L RE IQ
Sbjct: 361 RLYDQEIEGQTIGIKGAFVKEFNGSLSLSTGNSSRIELNMECAETANLYKWYRETRPSIQ 420
Query: 658 DQQL-----------------------GMG---DKADYCSVRGIIQVFRGSNTTYKACPS 691
+ L G+G +K + ++ +I + YK+C +
Sbjct: 421 ARNLTTTGLTTDSYGRDLRIICLSEFCGLGRDSEKGTFFNITAMISSLKADGALYKSCGT 480
Query: 692 QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVT 751
C KKVI+ NN YRCEKC+ + + Y L++ + I D++ S WVT+F+++A +L
Sbjct: 481 NGCKKKVIEINN-QYRCEKCDITLDKYKYVLLMTMEISDFSGSHWVTVFEDKAVKLLKTD 539
Query: 752 AQEVGESTED------HPALKKALFTQYIFRLRAKLEHYN 785
A+++G+ ++ + F +Y FR+RAK E YN
Sbjct: 540 AEQLGQLLDNNLLDEYNEVFNAVRFREYTFRIRAKSEFYN 579
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 169/329 (51%), Gaps = 14/329 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F++ +DYE++ + V PC + E P + V L +A E++D++ +
Sbjct: 259 ANKRFNTTGHDYEITIRSDSEVSPCLDREKIEQPKLSLSIVRLCNVAN-HVGESVDIIAI 317
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS-NKPVIAVKAA 124
++ VT + KRDI L+D S+ +T+T WG++A +D I +K A
Sbjct: 318 VEKVNDIMQVTARNTGAQLEKRDIVLIDASETEITLTFWGEQARLYDQEIEGQTIGIKGA 377
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGN 184
V EF G +LS SS + LN + E L W+ +T + + T G+ + G
Sbjct: 378 FVKEFNGSLSLSTGNSSRIELNMECAETANLYKWYR-ETRPSIQARNLTTTGLTTDSYGR 436
Query: 185 LLLMREIQDQQLGMG---DKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMY 241
L + + + G+G +K + ++ +I + YK+C + C KKVI+ NN Y
Sbjct: 437 DLRIICLS-EFCGLGRDSEKGTFFNITAMISSLKADGALYKSCGTNGCKKKVIEINN-QY 494
Query: 242 RCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED----- 296
RCEKC+ + + Y L++ + I D++ S WVT+F+++A +L A+++G+ ++
Sbjct: 495 RCEKCDITLDKYKYVLLMTMEISDFSGSHWVTVFEDKAVKLLKTDAEQLGQLLDNNLLDE 554
Query: 297 -HPALKKALFTQYIFRLRAKLEHYNGTKK 324
+ F +Y FR+RAK E YNG +K
Sbjct: 555 YNEVFNAVRFREYTFRIRAKSEFYNGEEK 583
>gi|356511809|ref|XP_003524615.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Glycine max]
Length = 620
Score = 189 bits (479), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 152/542 (28%), Positives = 250/542 (46%), Gaps = 101/542 (18%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AM+ + + + G + ++++ Y V+ + + S L+ ++ + P E+ K
Sbjct: 56 AMIPSDMRSQVLSGAIQNLGLIRVLDYTVNDIPNKS---DKYLLAIKCEAVSPALEMEIK 112
Query: 395 I---GNPQPLNTNTDNSSTQQTPAA---------TNTNGSNGV----HNNVAIPRQASAP 438
G+ L + + AA T +N + H N A P A
Sbjct: 113 SEESGSGILLKPKVEGGVKTEGAAAGILLKPKQEVVTKSANQILREQHGNSA-PAARMAM 171
Query: 439 VVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFN 497
+ P+VSL+PYQ WTIK VT+K +R + NARG G +F+++L DE G +I+ATMFN
Sbjct: 172 TRRVRPLVSLNPYQGNWTIKVSVTSKGNMRTYKNARGDGCVFNVELTDEDGTQIQATMFN 231
Query: 498 DECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN--- 554
+ +F D KVYYIS TLK ANK+F ++ NDYEM+ ++ V E+ VG
Sbjct: 232 NAARKFFDKFVLGKVYYISRGTLKVANKQFKTVQNDYEMTLNENSEV----EEVVGEASF 287
Query: 555 MPSVKYCFVPLKTIA-EISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ 613
+P K+ FV + + ++ E +DV+GV + + S+ K++ ++ KRDIT+ D ++
Sbjct: 288 VPETKFNFVQIDQLGPHVNKSELVDVIGVVKNVSSTMSIRRKSDNESIPKRDITIADDTK 347
Query: 614 ASVTMTLWGKEA-----ETFDASNK-PVIAVKAARVSEFQG------------------- 648
+V ++LW + A E D +K PV+A+K+ +V +FQG
Sbjct: 348 KTVVVSLWNELATTTGEELLDIVDKSPVVAIKSLKVGDFQGVSLSTIGRSVVLVNPDIPE 407
Query: 649 --NLLLMREIQDQQLGM---GDKADYCSVRGIIQVF------------------------ 679
NL + + + M G + S GI V+
Sbjct: 408 AKNLRSWYDFEGKDAAMDSVGSGSSPISNNGIRSVYTDRIHLSDIISNPSLGDGKPAFFS 467
Query: 680 -RGSNTTYK--------ACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGD 730
RG T K AC + CNKKV + Y C+ C K + R I+ + D
Sbjct: 468 LRGHITFIKPDQAMWYRACKT--CNKKVTESFGSGYWCDGCQKSDEQCSLRYIMVAKVSD 525
Query: 731 WTNSVWVTLFQNEAESILGVTAQEVG----ESTEDHP---ALKKALFTQYIFRLRAKLEH 783
+ ++++F EAE I+G +A ++ + ED+P LK+A + Q++FR+
Sbjct: 526 GSAETFISVFNQEAEKIVGCSADDLDNLKLQEGEDNPYQMTLKEATWAQHLFRVSVTPNE 585
Query: 784 YN 785
YN
Sbjct: 586 YN 587
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 106/349 (30%), Positives = 178/349 (51%), Gaps = 44/349 (12%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN---MPSVKYCFVPLKTIA-EISPDENID 61
ANK+F ++ NDYEM+ ++ V E+ VG +P K+ FV + + ++ E +D
Sbjct: 257 ANKQFKTVQNDYEMTLNENSEV----EEVVGEASFVPETKFNFVQIDQLGPHVNKSELVD 312
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ETFDASNK 116
V+GV + + S+ K++ ++ KRDIT+ D ++ +V ++LW + A E D +K
Sbjct: 313 VIGVVKNVSSTMSIRRKSDNESIPKRDITIADDTKKTVVVSLWNELATTTGEELLDIVDK 372
Query: 117 -PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTG 175
PV+A+K+ +V +FQG +LS SV+ +NPDIPE L+ W+ FE
Sbjct: 373 SPVVAIKSLKVGDFQG-VSLSTIGRSVVLVNPDIPEAKNLRSWYD------FEGKDAAMD 425
Query: 176 GMGGGAA------------GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YK 222
+G G++ + L I + LG G A + S+RG I + Y+
Sbjct: 426 SVGSGSSPISNNGIRSVYTDRIHLSDIISNPSLGDGKPA-FFSLRGHITFIKPDQAMWYR 484
Query: 223 ACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESI 282
AC + CNKKV + Y C+ C K + R I+ + D + ++++F EAE I
Sbjct: 485 ACKT--CNKKVTESFGSGYWCDGCQKSDEQCSLRYIMVAKVSDGSAETFISVFNQEAEKI 542
Query: 283 LGVTAQEVG----ESTEDHP---ALKKALFTQYIFRLRAKLEHYNGTKK 324
+G +A ++ + ED+P LK+A + Q++FR+ YNG K+
Sbjct: 543 VGCSADDLDNLKLQEGEDNPYQMTLKEATWAQHLFRVSVTPNEYNGEKR 591
>gi|225457192|ref|XP_002283959.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit isoform
1 [Vitis vinifera]
Length = 625
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 145/540 (26%), Positives = 249/540 (46%), Gaps = 95/540 (17%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AM + + I G + ++Q+ Y ++ + S LI+ + + P E+ FK
Sbjct: 55 AMFPSSFSSEINSGNIQNLGLIQVIDYTLNDIPS---KQEKYLIVTKCEAVSPALEVEFK 111
Query: 395 ----------IGNPQPL-----NTNTDNSST-----QQTPAATNTNGSNGVHNNVAIPRQ 434
+ P+ + T+ + Q+ A + N H N+A P
Sbjct: 112 TEVKSEETGILLRPKQVVEIQREVKTEGTGIFLKPKQEIVAKSAAQIVNEQHGNMA-PAA 170
Query: 435 ASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRA 493
A + HP+VSL+PYQ WTIK R+TNK +R + NARG G +F+++L DE G +I+A
Sbjct: 171 RMAMTRRVHPLVSLNPYQGNWTIKVRLTNKGTMRTYKNARGEGCVFNVELTDEDGTQIQA 230
Query: 494 TMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVG 553
TMFN+ +F++ + KVYYIS LK ANK+F ++ NDYEM+ ++ V + +E
Sbjct: 231 TMFNEAARKFYEKFQLGKVYYISKGALKVANKQFKTVQNDYEMTLNENSEVEEASNEETF 290
Query: 554 NMPSVKYCFVPLKTIAE-ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS 612
+P K+ FV ++ + ++ E +DV+GV + S+ K+N KRDIT+ D++
Sbjct: 291 -IPEAKFKFVEIEELGPYVNGKELVDVIGVVQSVSPTMSIRRKSNNDIVPKRDITIADKT 349
Query: 613 QASVTMTLWGKEA-----ETFDASNK-PVIAVKAARVSEFQG--------NLLL------ 652
+ +V ++LW A E D ++K P++A+K+ +V +FQG +++L
Sbjct: 350 KKTVVVSLWNDHATNVGQELLDNADKFPIVAIKSLKVGDFQGVSLSTLSKSIVLVNPDTP 409
Query: 653 ----MREIQDQQ------LGMGDKADYCSVRGIIQVF--RGSNTTYKACPSQDCNKKVI- 699
+R D + +G S G+ ++ R S + + PS +K
Sbjct: 410 ESKKLRSWYDSEGKGASMASIGSDISPSSKGGVKSMYYDRVSLSHVTSNPSLGEDKPSFF 469
Query: 700 -----------DQNNGMYRCEKCNKEF-----------------NTFTYRLILPVMIGDW 731
DQ C+ CNK+ + + R I+ V + D
Sbjct: 470 SIRAYISFIKPDQTMWYRACKTCNKKVTDAIGSGYWCEGCQKNDDECSLRYIMVVKVSDA 529
Query: 732 TNSVWVTLFQNEAESILGVTAQEV-------GESTEDHPALKKALFTQYIFRLRAKLEHY 784
+ W++LF +AE + G +A E+ GE LK+A++ ++FR+ Y
Sbjct: 530 SGEAWLSLFNEQAERMFGCSADELDKLKSQEGEENLFQQKLKEAIWVPHLFRISVAQHEY 589
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 173/342 (50%), Gaps = 30/342 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE-ISPDENIDVLG 64
ANK+F ++ NDYEM+ ++ V + +E +P K+ FV ++ + ++ E +DV+G
Sbjct: 260 ANKQFKTVQNDYEMTLNENSEVEEASNEETF-IPEAKFKFVEIEELGPYVNGKELVDVIG 318
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ETFDASNK-PV 118
V + S+ K+N KRDIT+ D+++ +V ++LW A E D ++K P+
Sbjct: 319 VVQSVSPTMSIRRKSNNDIVPKRDITIADKTKKTVVVSLWNDHATNVGQELLDNADKFPI 378
Query: 119 IAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ--------TNTRFEPV 170
+A+K+ +V +FQG +LS S VL +NPD PE KL+ W+ ++ + P
Sbjct: 379 VAIKSLKVGDFQGVSLSTLSKSIVL-VNPDTPESKKLRSWYDSEGKGASMASIGSDISPS 437
Query: 171 SQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDC 229
S+ GG+ + L + LG DK + S+R I + T Y+AC + C
Sbjct: 438 SK--GGVKSMYYDRVSLSHVTSNPSLG-EDKPSFFSIRAYISFIKPDQTMWYRACKT--C 492
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
NKKV D Y CE C K + + R I+ V + D + W++LF +AE + G +A E
Sbjct: 493 NKKVTDAIGSGYWCEGCQKNDDECSLRYIMVVKVSDASGEAWLSLFNEQAERMFGCSADE 552
Query: 290 V-------GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKK 324
+ GE LK+A++ ++FR+ Y K+
Sbjct: 553 LDKLKSQEGEENLFQQKLKEAIWVPHLFRISVAQHEYMNEKR 594
>gi|391326773|ref|XP_003737886.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Metaseiulus occidentalis]
Length = 393
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/330 (33%), Positives = 176/330 (53%), Gaps = 26/330 (7%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSAT---NRSVLIILELN 383
DGV ++ M+++Q I D ++K + V++ S T +R ++I+++
Sbjct: 47 DGVEQFNYGMISSQAIPPIKD---------KLKPNCLLKVNTFSLTVTKDRPIIILMDCE 97
Query: 384 IIKPGTEIG---FKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVV 440
++ ++G K+ Q TD TPA T+ +P+ + +
Sbjct: 98 VVALAEDVGQGLLKVDESQKKELPTDPKPDVSTPAKTSR----------VLPQGSPSTRA 147
Query: 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDEC 500
PI +++P+QN+ TI+ RVTNK I+ W A G GKLFS ++LD+SGEIR T FN++C
Sbjct: 148 NLFPISAVNPFQNRCTIRGRVTNKGEIKTWEKASGKGKLFSFEILDDSGEIRVTGFNEQC 207
Query: 501 NRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKY 560
++F+D IE KVYYIS K ANK++ + NN+YE++ + V C E ++P Y
Sbjct: 208 DKFYDYIEPKKVYYISGFQCKAANKQWRTTNNEYELTLGKFSNVELCTE-TCDDLPEQLY 266
Query: 561 CFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTL 620
FV + I + D+ IDV G+ +A E + K++ K KRD +VD S+ VT+TL
Sbjct: 267 SFVAISDIETLPADQMIDVCGILKNAGEPQTFNRKSDGKPLTKRDAFIVDDSRKVVTLTL 326
Query: 621 WGKEAETFDASNKPVIAVKAARVSEFQGNL 650
W D ++ PVI + AR++ F G L
Sbjct: 327 WNDAISKIDRTDHPVILISKARITSFNGGL 356
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK++ + NN+YE++ + V C E ++P Y FV + I + D+ IDV G+
Sbjct: 230 ANKQWRTTNNEYELTLGKFSNVELCTE-TCDDLPEQLYSFVAISDIETLPADQMIDVCGI 288
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+A E + K++ K KRD +VD S+ VT+TLW D ++ PVI + AR
Sbjct: 289 LKNAGEPQTFNRKSDGKPLTKRDAFIVDDSRKVVTLTLWNDAISKIDRTDHPVILISKAR 348
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ 162
++ F GG +++ S S + ++PDI +L+ W++ +
Sbjct: 349 ITSFNGGLSIATSAGSAVEIDPDIDRAKELKTWWAKE 385
>gi|402592315|gb|EJW86244.1| hypothetical protein WUBG_02846 [Wuchereria bancrofti]
Length = 613
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 133/460 (28%), Positives = 219/460 (47%), Gaps = 72/460 (15%)
Query: 396 GNP---QPLNTNTDNSSTQ---QTP-AATNTNGSNG-VHNNVAIPRQASAPVVQT-HPIV 446
GNP + LN N + +T+ ++P ++T+G N + + + R+ + V Q PI
Sbjct: 122 GNPSDYRGLNPNANMHNTRLELRSPQKGSSTSGQNAPLRCSGSSSRRLANLVGQNLTPIK 181
Query: 447 SLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNRFHD 505
++PY NKW I VT K +R R K+F+ +L DE G IR F+D F+
Sbjct: 182 LITPYVNKWRICGVVTAKEDLRNIRTVRRDMKVFNFELTDEEGGCIRIAAFDDVAEEFYS 241
Query: 506 MIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPL 565
+I+K ++Y+S T+K ANK+F++ +DYE++ + V PC + E P + V L
Sbjct: 242 IIQKGSMFYVSGGTVKQANKRFNTTGHDYEITIRSDSEVSPCLDREKIEQPKLSLSIVRL 301
Query: 566 KTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA 625
+A E+ID++ + ++ VT + KRDI L+D S+ +T+T WG++A
Sbjct: 302 CNVAN-HVGESIDIIAIVEKVNDIMQVTARNTGTQLEKRDIVLIDTSETEITLTFWGEQA 360
Query: 626 ETFDAS-NKPVIAVKAARVSEFQGNLLL-----------------------MRE----IQ 657
+D I +K V EF GNL L RE +Q
Sbjct: 361 RLYDKEIEGQTIGIKGTFVKEFNGNLSLSTASSSRIELNMDCAETASLYKWYRETRPSVQ 420
Query: 658 DQQL-----------------------GMG---DKADYCSVRGIIQVFRGSNTTYKACPS 691
+ L G+G +K ++ +I + YK+C +
Sbjct: 421 ARNLTTTGLTADSYGRDLRIIRLSEFCGLGRDSEKGTLFNITAMISSLKADGALYKSCGT 480
Query: 692 QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVT 751
C KKVI+ NN YRCEKC+ + + Y L++ + I D++ S WVT+F+++A +L
Sbjct: 481 NGCKKKVIEINN-QYRCEKCDITLDKYKYVLLMTMEISDFSGSHWVTVFEDKAVKLLKSD 539
Query: 752 AQEVGESTED------HPALKKALFTQYIFRLRAKLEHYN 785
A+++G+ ++ + F +Y FR+RAK E YN
Sbjct: 540 AEQLGQLLDNDLLDEYNEVFNAVRFREYTFRIRAKSEFYN 579
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/329 (30%), Positives = 170/329 (51%), Gaps = 12/329 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F++ +DYE++ + V PC + E P + V L +A E+ID++ +
Sbjct: 259 ANKRFNTTGHDYEITIRSDSEVSPCLDREKIEQPKLSLSIVRLCNVAN-HVGESIDIIAI 317
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS-NKPVIAVKAA 124
++ VT + KRDI L+D S+ +T+T WG++A +D I +K
Sbjct: 318 VEKVNDIMQVTARNTGTQLEKRDIVLIDTSETEITLTFWGEQARLYDKEIEGQTIGIKGT 377
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAG- 183
V EF G +LS + SS + LN D E L W+ +T + + T G+ + G
Sbjct: 378 FVKEFNGNLSLSTASSSRIELNMDCAETASLYKWYR-ETRPSVQARNLTTTGLTADSYGR 436
Query: 184 NLLLMREIQDQQLGM-GDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
+L ++R + LG +K ++ +I + YK+C + C KKVI+ NN YR
Sbjct: 437 DLRIIRLSEFCGLGRDSEKGTLFNITAMISSLKADGALYKSCGTNGCKKKVIEINN-QYR 495
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED------ 296
CEKC+ + + Y L++ + I D++ S WVT+F+++A +L A+++G+ ++
Sbjct: 496 CEKCDITLDKYKYVLLMTMEISDFSGSHWVTVFEDKAVKLLKSDAEQLGQLLDNDLLDEY 555
Query: 297 HPALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ F +Y FR+RAK E YNG +KI
Sbjct: 556 NEVFNAVRFREYTFRIRAKSEFYNGEEKI 584
>gi|242086611|ref|XP_002439138.1| hypothetical protein SORBIDRAFT_09g001240 [Sorghum bicolor]
gi|241944423|gb|EES17568.1| hypothetical protein SORBIDRAFT_09g001240 [Sorghum bicolor]
Length = 878
Score = 186 bits (472), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 146/561 (26%), Positives = 257/561 (45%), Gaps = 127/561 (22%)
Query: 317 EHYNGTKKIPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSV 376
EH +G +G ++ ++N + DG++ + +I+ ++ + + + NR +
Sbjct: 271 EHADG-----NGTLKPMLQVVDVRMNTCVLDGSIRKGSIIHLQEFTCNTIQ-----NRRL 320
Query: 377 LIILELNIIKPGTEIGFKIGNPQP--LNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQ 434
+I+ +L +++ I +GNP+P + + T P A N
Sbjct: 321 IIVTKLYVLQSECNI---MGNPKPYKMRNQPNEQVTNLPPNAEN---------------- 361
Query: 435 ASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRA 493
+P T P+ +L+PY+ +W I ARVT KT +R ++++RG GK+FS DLLD + GEIRA
Sbjct: 362 -KSPFCIT-PVSALNPYETRWKIMARVTAKTDLRHYSSSRGPGKVFSFDLLDGQGGEIRA 419
Query: 494 TMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVG 553
T FN + ++F D+IE DKVY ISN ++KPA K ++S+N++YE++ + T++ C +D+
Sbjct: 420 TCFNAQADQFFDLIEVDKVYLISNGSVKPALKNYNSLNHEYEITLDNKTSIEVCVDDD-S 478
Query: 554 NMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ 613
N+P +Y F + I I +D++G+ + + S++ + + KR + L D S
Sbjct: 479 NIPRQEYNFRQISEIENIEAGVIVDLIGI-VTSVGPSAIVMRKDGTQAQKRTLQLKDMSV 537
Query: 614 ASVTMTLWGK--EAETF------DASNKPVIAVKAARVSEFQGN---------------- 649
S+ + LWGK +AE D+ + P++++K+ RV +F G
Sbjct: 538 RSMEIILWGKFCDAEGHQLQLLCDSGSNPILSLKSGRVCDFSGRSVVTISSTQLKVNPDF 597
Query: 650 ----------------------------------LLLMREIQDQQLGMGDKADYCSVRGI 675
L + +I+D+ LG DK D+ +VR +
Sbjct: 598 PVAKRLKQWYVTEGKNTACISLSQGISNMSRNHVLKTIAQIKDENLGRSDKPDFITVRAV 657
Query: 676 IQVFRGSNTTYKACP--------------SQDCNKK-------VIDQNNGMYRCEKCNKE 714
+ N Y+AC + C KK VID + +
Sbjct: 658 LSHVGADNFCYQACTLELNGKRCCSFEFNGKRCYKKLVRKPITVIDAIRALKTVIDAIRA 717
Query: 715 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV--------GES--TEDHPA 764
T +++ I D T + + T FQ E I G TAQE+ GE E
Sbjct: 718 LKTVIDGIVID--IKDHTGTTYATAFQEAGEVIFGHTAQELFMIRNVEQGEERFKEFTEI 775
Query: 765 LKKALFTQYIFRLRAKLEHYN 785
++ ++ +Y+F+L+ + YN
Sbjct: 776 MQAIIWREYLFKLKVDEKTYN 796
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 173/361 (47%), Gaps = 47/361 (13%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K ++S+N++YE++ + T++ C +D+ N+P +Y F + I I +D++G
Sbjct: 448 PALKNYNSLNHEYEITLDNKTSIEVCVDDD-SNIPRQEYNFRQISEIENIEAGVIVDLIG 506
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK--EAETF------DASNK 116
+ + + S++ + + KR + L D S S+ + LWGK +AE D+ +
Sbjct: 507 I-VTSVGPSAIVMRKDGTQAQKRTLQLKDMSVRSMEIILWGKFCDAEGHQLQLLCDSGSN 565
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTG 175
P++++K+ RV +F G +++S S+ L +NPD P +L+ W+ T+ NT +SQ
Sbjct: 566 PILSLKSGRVCDFSGRSVVTIS-STQLKVNPDFPVAKRLKQWYVTEGKNTACISLSQGIS 624
Query: 176 GMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP---------- 225
M L + +I+D+ LG DK D+ +VR ++ N Y+AC
Sbjct: 625 NMSRNHV--LKTIAQIKDENLGRSDKPDFITVRAVLSHVGADNFCYQACTLELNGKRCCS 682
Query: 226 ----SQDCNKK-------VIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTL 274
+ C KK VID + + T +++ I D T + + T
Sbjct: 683 FEFNGKRCYKKLVRKPITVIDAIRALKTVIDAIRALKTVIDGIVID--IKDHTGTTYATA 740
Query: 275 FQNEAESILGVTAQEV--------GES--TEDHPALKKALFTQYIFRLRAKLEHYNGTKK 324
FQ E I G TAQE+ GE E ++ ++ +Y+F+L+ + YNG ++
Sbjct: 741 FQEAGEVIFGHTAQELFMIRNVEQGEERFKEFTEIMQAIIWREYLFKLKVDEKTYNGEQR 800
Query: 325 I 325
+
Sbjct: 801 V 801
>gi|218195961|gb|EEC78388.1| hypothetical protein OsI_18166 [Oryza sativa Indica Group]
Length = 988
Score = 186 bits (472), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 133/467 (28%), Positives = 212/467 (45%), Gaps = 106/467 (22%)
Query: 375 SVLIILELNIIKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQ 434
S L I+ N ++P +++ +N NT ++Q + N N N + R
Sbjct: 341 SQLNIMNANTMQPTSQLNT-------MNANTMQPTSQLSSLNPNQNQRGPASRNDSATR- 392
Query: 435 ASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRA 493
PI +L+PYQ KWTIKARVT K+ IR W+NAR SG +FS DLLD + GEIRA
Sbjct: 393 -------IIPITALNPYQPKWTIKARVTAKSDIRHWSNARSSGTVFSFDLLDAQGGEIRA 445
Query: 494 TMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVG 553
+ + ++F IE +VY IS +LKPA KK++++N+DYE++ + + D+
Sbjct: 446 QCWKESADKFFGQIEVGRVYLISRGSLKPAQKKYNTLNHDYEITLDIGLSTVEVCSDDDN 505
Query: 554 NMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ 613
++P ++Y F + + ++ + +D+LGV + +++ K +T KR I L D S
Sbjct: 506 SIPRLQYNFRQISELENMANETIVDLLGVVTSVSPSATIMRKIGTET-RKRSIQLKDLSG 564
Query: 614 ASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGN------------------------ 649
S+ +TLWG + + ARV++F G
Sbjct: 565 RSIEVTLWGNFCD-----------AEGARVADFNGKSVSTSGSTQLIINPDFPEVERLRQ 613
Query: 650 -----------LLLMRE---------------IQDQQLGMGDKADYCSVRGIIQVFRGSN 683
+ L RE I+D+ LG +K D+ +V+ I +
Sbjct: 614 WYMTEGKTAPCISLSREMLNMGRTDARKTIAQIKDENLGRLEKPDWITVKAAISHVTTES 673
Query: 684 TTYKACP-----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVT 738
Y ACP + CNKK I+ +GM+ C++C++ F YR +L I D T S + +
Sbjct: 674 FCYPACPKLLPVGRQCNKKAINNGDGMWHCDRCDESFQNPEYRYMLRFQIQDHTGSTYAS 733
Query: 739 LFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAKLEHYN 785
F D ++ L Y+F+L+ K E YN
Sbjct: 734 AF--------------------DEAGVRWHL---YLFKLKVKEETYN 757
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/324 (28%), Positives = 159/324 (49%), Gaps = 48/324 (14%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA KK++++N+DYE++ + + D+ ++P ++Y F + + ++ + +D+LG
Sbjct: 474 PAQKKYNTLNHDYEITLDIGLSTVEVCSDDDNSIPRLQYNFRQISELENMANETIVDLLG 533
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V + +++ K +T KR I L D S S+ +TLWG + + A
Sbjct: 534 VVTSVSPSATIMRKIGTET-RKRSIQLKDLSGRSIEVTLWGNFCD-----------AEGA 581
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEP---VSQRTGGMGGGA 181
RV++F G K++S S S+ L +NPD PE +L+ W+ T+ T P +S+ MG
Sbjct: 582 RVADFNG-KSVSTSGSTQLIINPDFPEVERLRQWYMTEGKT--APCISLSREMLNMGRTD 638
Query: 182 AGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP-----SQDCNKKVIDQ 236
A + +I+D+ LG +K D+ +V+ I + Y ACP + CNKK I+
Sbjct: 639 ARKTIA--QIKDENLGRLEKPDWITVKAAISHVTTESFCYPACPKLLPVGRQCNKKAINN 696
Query: 237 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 296
+GM+ C++C++ F YR +L I D T S + + F D
Sbjct: 697 GDGMWHCDRCDESFQNPEYRYMLRFQIQDHTGSTYASAF--------------------D 736
Query: 297 HPALKKALFTQYIFRLRAKLEHYN 320
++ L Y+F+L+ K E YN
Sbjct: 737 EAGVRWHL---YLFKLKVKEETYN 757
Score = 39.3 bits (90), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGVN +MLAT LN ++ D TL T+VQ+ ++ + + + ++I+++L++
Sbjct: 175 LSDGVNTQQ-SMLATALNPLVKDATLRPGTVVQLTDFMCNTIQG-----KRIIIVVKLDV 228
Query: 385 IKPGTEIGFKIGNP---QPLNTNTDNSSTQQTPAATNTNGS 422
++ + IGNP +P + + Q A NG+
Sbjct: 229 LQNDCIV---IGNPKHYEPKSLTKEQDPNLQASVAQTNNGT 266
>gi|238502014|ref|XP_002382241.1| replication protein A 70 kDa DNA-binding subunit [Aspergillus
flavus NRRL3357]
gi|220692478|gb|EED48825.1| replication protein A 70 kDa DNA-binding subunit [Aspergillus
flavus NRRL3357]
Length = 375
Score = 186 bits (471), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 107/330 (32%), Positives = 185/330 (56%), Gaps = 16/330 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+F+++NNDYE++F T V+ ED+ ++P +++ F + + + D IDV+GV
Sbjct: 23 AKKQFTNLNNDYELTFERDT-VVEKAEDQ-ADVPQIRFSFTTIGDLQSVEKDTTIDVIGV 80
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ AE+S + KT K Y KR++TLVD + SV +T+WG A F+ + + VIA K +
Sbjct: 81 LKEVAEVSQIMSKTTNKPYNKRELTLVDSTGFSVRLTVWGSTALNFNVTPESVIAFKGVK 140
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
VS+F G++LSL S ++++PDI E HKL+GW+ Q + V M G AA
Sbjct: 141 VSDFG-GRSLSLLSSGSMTVDPDIEEAHKLKGWYDAQGR---DGVFASHASMPGVAASTT 196
Query: 186 LL-----MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGM 240
L + +++++QLGM D+ Y S++ + + Y AC S+ CNKKV + + G
Sbjct: 197 KLEQFKTVAQVKEEQLGMSDEVAYFSLKATVIYIKQDTMCYPACLSEGCNKKVTELDPGQ 256
Query: 241 YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPAL 300
+RCE+C+K YR I+ + + D T ++++ F ++G +A ++ E ++
Sbjct: 257 WRCERCDKTHPRPEYRYIMLISVSDHTGQLYLSCFDEVGRYMMGTSADQLMEIRQNDDKA 316
Query: 301 KKALFTQ-----YIFRLRAKLEHYNGTKKI 325
+F + FR RAK++++ ++I
Sbjct: 317 AGDIFQDANCRTWNFRCRAKIDNFGDQQRI 346
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 92/145 (63%), Gaps = 3/145 (2%)
Query: 503 FHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC 561
+D+ ++ VYYIS+ C +K A K+F+++NNDYE++F T V+ ED+ ++P +++
Sbjct: 2 LYDVFQEGSVYYISSPCGVKLAKKQFTNLNNDYELTFERDT-VVEKAEDQ-ADVPQIRFS 59
Query: 562 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
F + + + D IDV+GV + AE+S + KT K Y KR++TLVD + SV +T+W
Sbjct: 60 FTTIGDLQSVEKDTTIDVIGVLKEVAEVSQIMSKTTNKPYNKRELTLVDSTGFSVRLTVW 119
Query: 622 GKEAETFDASNKPVIAVKAARVSEF 646
G A F+ + + VIA K +VS+F
Sbjct: 120 GSTALNFNVTPESVIAFKGVKVSDF 144
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 87/168 (51%), Gaps = 9/168 (5%)
Query: 622 GKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRG 681
G++ ++ P +A ++ +F+ + +++++QLGM D+ Y S++ + +
Sbjct: 177 GRDGVFASHASMPGVAASTTKLEQFK----TVAQVKEEQLGMSDEVAYFSLKATVIYIKQ 232
Query: 682 SNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQ 741
Y AC S+ CNKKV + + G +RCE+C+K YR I+ + + D T ++++ F
Sbjct: 233 DTMCYPACLSEGCNKKVTELDPGQWRCERCDKTHPRPEYRYIMLISVSDHTGQLYLSCFD 292
Query: 742 NEAESILGVTAQEVGESTEDHPALKKALFTQ-----YIFRLRAKLEHY 784
++G +A ++ E ++ +F + FR RAK++++
Sbjct: 293 EVGRYMMGTSADQLMEIRQNDDKAAGDIFQDANCRTWNFRCRAKIDNF 340
>gi|344230770|gb|EGV62655.1| hypothetical protein CANTEDRAFT_115222 [Candida tenuis ATCC 10573]
Length = 376
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 113/332 (34%), Positives = 180/332 (54%), Gaps = 15/332 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A +FS +++ YE+S T V C + GN+P +K+ F L I P+ IDV+GV
Sbjct: 21 AKPQFSRLSHPYELSLDRDTIVEECFSNN-GNVPKLKFNFTKLNQIQSAEPNTVIDVVGV 79
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ +T K+ K + +RDI +VD S S+T+ LW A F+ S VIA K +
Sbjct: 80 LREVKPAFQITSKSTGKPFDRRDIDIVDDSNFSITVGLWNATAIDFNLSEGTVIAFKGCK 139
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAGN 184
+ +F GG++L+L+ + + NPD PE ++L+GW+ Q +N F+ + G N
Sbjct: 140 IQDF-GGRSLTLTQTGSILPNPDAPEAYQLKGWYDNQGSNETFQTLKADNAG-SANYIKN 197
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD------CNKKVIDQNN 238
+ +++++ LG ++ D+ SV+ I F+ Y AC ++ CN+K+IDQ +
Sbjct: 198 RKTIAQVKEENLGAQEQPDFFSVKATINFFKTETFCYPACVNKQEASNNLCNRKIIDQGD 257
Query: 239 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP 298
G +RCEKC+ ++ TYR IL I D T +W TLF EA I GV+A E+ E +
Sbjct: 258 GTWRCEKCDINYSEATYRYILNCSIMDATEQLWATLFDQEASKIFGVSANELLVLKESNE 317
Query: 299 A-LKKAL----FTQYIFRLRAKLEHYNGTKKI 325
A KK + ++ FRL+A+ + YNG +I
Sbjct: 318 AEFKKVVEAVTMKEFSFRLKARQDSYNGESRI 349
Score = 149 bits (375), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 162/344 (47%), Gaps = 63/344 (18%)
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
++ +++ KVYYIS ++ A +FS +++ YE+S T V C + GN+P +K+ F
Sbjct: 2 YETLQEGKVYYISKARIQAAKPQFSRLSHPYELSLDRDTIVEECFSNN-GNVPKLKFNFT 60
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
L I P+ IDV+GV + +T K+ K + +RDI +VD S S+T+ LW
Sbjct: 61 KLNQIQSAEPNTVIDVVGVLREVKPAFQITSKSTGKPFDRRDIDIVDDSNFSITVGLWNA 120
Query: 624 EAETFDASNKPVIAVKAARVSEFQGNLLLM------------------------------ 653
A F+ S VIA K ++ +F G L +
Sbjct: 121 TAIDFNLSEGTVIAFKGCKIQDFGGRSLTLTQTGSILPNPDAPEAYQLKGWYDNQGSNET 180
Query: 654 ---------------------REIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQ 692
+++++ LG ++ D+ SV+ I F+ Y AC ++
Sbjct: 181 FQTLKADNAGSANYIKNRKTIAQVKEENLGAQEQPDFFSVKATINFFKTETFCYPACVNK 240
Query: 693 D------CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAES 746
CN+K+IDQ +G +RCEKC+ ++ TYR IL I D T +W TLF EA
Sbjct: 241 QEASNNLCNRKIIDQGDGTWRCEKCDINYSEATYRYILNCSIMDATEQLWATLFDQEASK 300
Query: 747 ILGVTAQEVGESTEDHPA-LKKAL----FTQYIFRLRAKLEHYN 785
I GV+A E+ E + A KK + ++ FRL+A+ + YN
Sbjct: 301 IFGVSANELLVLKESNEAEFKKVVEAVTMKEFSFRLKARQDSYN 344
>gi|356507210|ref|XP_003522362.1| PREDICTED: LOW QUALITY PROTEIN: replication protein A 70 kDa
DNA-binding subunit-like [Glycine max]
Length = 586
Score = 183 bits (464), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 132/430 (30%), Positives = 204/430 (47%), Gaps = 70/430 (16%)
Query: 388 GTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVA-IPRQASAPVVQTHPIV 446
G GF NPQ + + +S + P + ++ N A + R +AP + PI
Sbjct: 141 GQNTGFH--NPQFEASRSLQNSYARPPQQPMYRHPSPMYTNKAPMGRNEAAPRII--PIA 196
Query: 447 SLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNRFHD 505
+L+PYQ+ WTIKARVT K +R + NARG K+FS DLLD + GEIRAT FN ++F++
Sbjct: 197 TLNPYQSMWTIKARVTFKAELRHYTNARGDRKVFSFDLLDSDGGEIRATCFNVVADQFYN 256
Query: 506 MIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPL 565
+IE KVY I ++KP K F+ + ND E++ ++ + PC +D ++ S + + P+
Sbjct: 257 VIEAGKVYLIFRGSIKPTQKNFNHLPNDQELTLDVASIIQPCLDDN-DSITSQTFNYRPI 315
Query: 566 KTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK-- 623
I + + +DV+GV + +S+ K N KR + L D S SV +TL G
Sbjct: 316 SEIESLENNNIVDVIGVVTSISPKTSIMRK-NGTEVQKRTLQLKDMSGRSVELTLRGNFC 374
Query: 624 --EAETF----DASNKPVIAVKAARVSEFQGN---------------------------- 649
E + D PV+A KA RV++F G
Sbjct: 375 IVEGQMLQSICDVGEFPVLATKAIRVNDFNGKSVGTIATSQLYVEADFPEACILKIWFEN 434
Query: 650 -------LLLMRE---------------IQDQQLGMGDKADYCSVRGIIQVFRGSNTTYK 687
L + RE I+D++LG +K ++ SV + N Y
Sbjct: 435 EGKSVPTLSISREMSNLGKTDVRKTISQIKDEKLGTSEKPNWISVFAAFXHIKVDNFYYP 494
Query: 688 ACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNE 743
CP + CNK V + +G + CE C + + +R +L + I D T+ WVT+FQ
Sbjct: 495 GCPLKIRDRQCNKNVTNNADGTWHCEICIQSIDACDFRYLLSMQIQDHTSITWVTVFQKS 554
Query: 744 AESILGVTAQ 753
E I+G+ A+
Sbjct: 555 GEEIMGIPAK 564
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 143/297 (48%), Gaps = 18/297 (6%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
P K F+ + ND E++ ++ + PC +D ++ S + + P+ I + + +DV+G
Sbjct: 273 PTQKNFNHLPNDQELTLDVASIIQPCLDDN-DSITSQTFNYRPISEIESLENNNIVDVIG 331
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK----EAETF----DASNK 116
V + +S+ K N KR + L D S SV +TL G E + D
Sbjct: 332 VVTSISPKTSIMRK-NGTEVQKRTLQLKDMSGRSVELTLRGNFCIVEGQMLQSICDVGEF 390
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTG 175
PV+A KA RV++F GK++ +S L + D PE L+ WF + + +S+
Sbjct: 391 PVLATKAIRVNDF-NGKSVGTIATSQLYVEADFPEACILKIWFENEGKSVPTLSISREMS 449
Query: 176 GMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNK 231
+G + +I+D++LG +K ++ SV + N Y CP + CNK
Sbjct: 450 NLGKTDVRKTI--SQIKDEKLGTSEKPNWISVFAAFXHIKVDNFYYPGCPLKIRDRQCNK 507
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 288
V + +G + CE C + + +R +L + I D T+ WVT+FQ E I+G+ A+
Sbjct: 508 NVTNNADGTWHCEICIQSIDACDFRYLLSMQIQDHTSITWVTVFQKSGEEIMGIPAK 564
>gi|147778951|emb|CAN71402.1| hypothetical protein VITISV_006284 [Vitis vinifera]
Length = 634
Score = 182 bits (462), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 145/549 (26%), Positives = 247/549 (44%), Gaps = 104/549 (18%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AM + + I G + ++Q+ Y ++ + S LI+ + + P E+ FK
Sbjct: 55 AMFPSSFSSEINSGNIQNLGLIQVIDYTLNDIPS---KQEKYLIVTKCEAVSPALEVEFK 111
Query: 395 ----------IGNPQPL----------NTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQ 434
+ P+ + T Q+ A + N H N+A P
Sbjct: 112 TEVKSEETGILLXPKQVVEIQXEVKXEGTGIFLKPKQEIVAKSAAQIVNEQHGNMA-PAA 170
Query: 435 ASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRA 493
A + HP+VSL+PYQ WTIK R+TNK +R + NARG G +F+++L DE G +I+A
Sbjct: 171 RMAMTRRVHPLVSLNPYQGNWTIKVRLTNKGTMRTYKNARGEGCVFNVELTDEDGTQIQA 230
Query: 494 TMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVG 553
TMFN+ +F++ + KVYYIS LK ANK+F ++ NDYEM+ ++ V + +E
Sbjct: 231 TMFNEAARKFYEKFQLGKVYYISKGALKVANKQFKTVQNDYEMTLNENSEVEEASNEETF 290
Query: 554 NMPSVKYCFVPLKTIAE-------ISPDENI---DVLGVCIDAAELSSVTGKTNQKTYMK 603
+P K+ FV ++ + + P ++ DV+GV + S+ K+N K
Sbjct: 291 -IPEAKFKFVEIEELGPYVNGKELVGPLTSLLIPDVIGVVQSVSPTMSIRRKSNNDIVPK 349
Query: 604 RDITLVDQSQASVTMTLWGKEA-----ETFDASNK-PVIAVKAARVSEFQG--------N 649
RDIT+ D+++ +V ++LW A E D ++K P++A+K+ +V +FQG +
Sbjct: 350 RDITIADKTKKTVVVSLWNDHATNVGQELLDNADKFPIVAIKSLKVGDFQGVSLSTLSKS 409
Query: 650 LLL----------MREIQDQQ------LGMGDKADYCSVRGIIQVF--RGSNTTYKACPS 691
++L +R D + +G S G+ ++ R S + + PS
Sbjct: 410 IVLVNPDTPESKKLRSWYDSEGKGASMASIGSDISPSSKGGVXSMYYDRVSLSHVTSNPS 469
Query: 692 QDCNKKVI------------DQNNGMYRCEKCNKEF-----------------NTFTYRL 722
+K DQ C+ CNK+ + + R
Sbjct: 470 LGEDKPSFFSIRAYISFIKPDQTMWYRACKTCNKKVTDAIGSGYWCEGCQKNDDECSLRY 529
Query: 723 ILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-------GESTEDHPALKKALFTQYIF 775
I+ V + D + W++LF +AE + G +A E+ GE LK+A++ ++F
Sbjct: 530 IMVVKVSDASGEAWLSLFNEQAERMFGCSADELDKLKSQEGEENLFQQKLKEAIWVPHLF 589
Query: 776 RLRAKLEHY 784
R+ Y
Sbjct: 590 RISVAQHEY 598
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/351 (29%), Positives = 173/351 (49%), Gaps = 39/351 (11%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE-------ISPDE 58
ANK+F ++ NDYEM+ ++ V + +E +P K+ FV ++ + + P
Sbjct: 260 ANKQFKTVQNDYEMTLNENSEVEEASNEETF-IPEAKFKFVEIEELGPYVNGKELVGPLT 318
Query: 59 NI---DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ET 110
++ DV+GV + S+ K+N KRDIT+ D+++ +V ++LW A E
Sbjct: 319 SLLIPDVIGVVQSVSPTMSIRRKSNNDIVPKRDITIADKTKKTVVVSLWNDHATNVGQEL 378
Query: 111 FDASNK-PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ------- 162
D ++K P++A+K+ +V +FQG +LS S VL +NPD PE KL+ W+ ++
Sbjct: 379 LDNADKFPIVAIKSLKVGDFQGVSLSTLSKSIVL-VNPDTPESKKLRSWYDSEGKGASMA 437
Query: 163 -TNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT- 220
+ P S+ GG+ + L + LG DK + S+R I + T
Sbjct: 438 SIGSDISPSSK--GGVXSMYYDRVSLSHVTSNPSLG-EDKPSFFSIRAYISFIKPDQTMW 494
Query: 221 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 280
Y+AC + CNKKV D Y CE C K + + R I+ V + D + W++LF +AE
Sbjct: 495 YRAC--KTCNKKVTDAIGSGYWCEGCQKNDDECSLRYIMVVKVSDASGEAWLSLFNEQAE 552
Query: 281 SILGVTAQEV-------GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKK 324
+ G +A E+ GE LK+A++ ++FR+ Y K+
Sbjct: 553 RMFGCSADELDKLKSQEGEENLFQQKLKEAIWVPHLFRISVAQHEYMNEKR 603
>gi|357120348|ref|XP_003561889.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Brachypodium distachyon]
Length = 635
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 130/426 (30%), Positives = 202/426 (47%), Gaps = 75/426 (17%)
Query: 430 AIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG 489
A P A + HP++SL+PYQ W IK RVT+K +R + NARG G +F+++L DE G
Sbjct: 179 AAPAARLAITRRVHPLISLNPYQGNWVIKVRVTSKGNLRTYRNARGEGHVFNVELTDEDG 238
Query: 490 -EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
+I+ATMFN+ +F+ M E KVYYIS +L+ ANK+F ++ NDYEM+ + V
Sbjct: 239 TQIQATMFNEAAKKFYPMFELGKVYYISKGSLRVANKQFKTVQNDYEMTLNENAVV---- 294
Query: 549 EDEVGN--MPSVKYCFVPLKTIAE-ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRD 605
E+ G +P V+Y FV + + + E +D++GV + S+ K + +T KRD
Sbjct: 295 EEAEGESFIPPVQYNFVKIDHLGPYVGGRELVDIIGVVQSVSPTLSIRRKIDNETIPKRD 354
Query: 606 ITLVDQSQASVTMTLWGKEAETFD------ASNKPVIAVKAARVSEFQG---------NL 650
I + D S +VT+TLW A T + PVIAVK+ +VS+FQG L
Sbjct: 355 IVVADDSNKTVTVTLWNDLATTIGEQLLDMVDSAPVIAVKSLKVSDFQGVSVSTVGKSTL 414
Query: 651 LLMREIQDQQL------GMGDKADYCSVRGIIQVFR--GSNTTYK---------ACPSQD 693
++ E+ + G SV + R GS + Y + P+
Sbjct: 415 VINPELPEADKLRTWYESEGKGTSMASVGADMGASRTGGSRSMYSDRVFLSHITSDPNLG 474
Query: 694 CNKKVI------------DQNNGMYRCEKCNKE-----------------FNTFTYRLIL 724
+K V DQ C+ CNK+ + R I+
Sbjct: 475 QDKPVFFSLNAYISHIKPDQTMWYRACKTCNKKVTEAVGSGYWCEGCQKNYEECMLRYIM 534
Query: 725 PVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP------ALKKALFTQYIFRLR 778
+ + D T W++LF ++AE I+G +A E+ S ++ LK+A + ++FR+
Sbjct: 535 AIKVSDPTGEAWLSLFNDQAERIVGCSADELDRSRKEEGDDSFLLRLKEATWVPHLFRVS 594
Query: 779 AKLEHY 784
Y
Sbjct: 595 VSQNEY 600
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/341 (31%), Positives = 170/341 (49%), Gaps = 30/341 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN--MPSVKYCFVPLKTIAE-ISPDENIDV 62
ANK+F ++ NDYEM+ + V E+ G +P V+Y FV + + + E +D+
Sbjct: 273 ANKQFKTVQNDYEMTLNENAVV----EEAEGESFIPPVQYNFVKIDHLGPYVGGRELVDI 328
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD------ASNK 116
+GV + S+ K + +T KRDI + D S +VT+TLW A T +
Sbjct: 329 IGVVQSVSPTLSIRRKIDNETIPKRDIVVADDSNKTVTVTLWNDLATTIGEQLLDMVDSA 388
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPV----- 170
PVIAVK+ +VS+FQG ++S S L +NP++PE KL+ W+ ++ T V
Sbjct: 389 PVIAVKSLKVSDFQG-VSVSTVGKSTLVINPELPEADKLRTWYESEGKGTSMASVGADMG 447
Query: 171 SQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDC 229
+ RTGG + + L D LG DK + S+ I + T Y+AC + C
Sbjct: 448 ASRTGGSRSMYSDRVFLSHITSDPNLGQ-DKPVFFSLNAYISHIKPDQTMWYRAC--KTC 504
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
NKKV + Y CE C K + R I+ + + D T W++LF ++AE I+G +A E
Sbjct: 505 NKKVTEAVGSGYWCEGCQKNYEECMLRYIMAIKVSDPTGEAWLSLFNDQAERIVGCSADE 564
Query: 290 VGESTEDHP------ALKKALFTQYIFRLRAKLEHYNGTKK 324
+ S ++ LK+A + ++FR+ Y G K+
Sbjct: 565 LDRSRKEEGDDSFLLRLKEATWVPHLFRVSVSQNEYMGEKR 605
>gi|296088465|emb|CBI37456.3| unnamed protein product [Vitis vinifera]
Length = 754
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 143/501 (28%), Positives = 228/501 (45%), Gaps = 89/501 (17%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG ++ MLATQ N+++ G L + ++VQ+ +++ N+
Sbjct: 51 LSDGCHLQQ-GMLATQRNELVKSGRLQKGSVVQLTQFVC-------------------NV 90
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHP 444
IK I L+ + P G+ GVH+ VA+ + H
Sbjct: 91 IKDRMII-----IIIDLDVILEKCDPIGEPKQYVQGGTAGVHSLVALLLNQIWLGLSLHI 145
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNRF 503
L + T K +R +NN RG GK+FS DLLD + GEIR T FN ++F
Sbjct: 146 SSHL-----------QFTAKGELRHYNNPRGDGKVFSFDLLDSDGGEIRVTCFNAVADQF 194
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
++ IE KVY IS +LKPA K F+ + ND+E+ ++T+ PC +D+ ++P ++ F
Sbjct: 195 YNQIETGKVYLISKGSLKPAQKTFNHLRNDHEIFLESTSTIQPCFDDD-NSIPRQQFHFR 253
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG- 622
+ + + + +DV+GV + +S+ K +T KR + L D S SV +TLWG
Sbjct: 254 SISDVESMENNSVVDVIGVVSFISPSASIMRKNGTET-QKRALHLKDMSGRSVELTLWGN 312
Query: 623 -------------------------------KEAETFDASNKPVIAVKAARVSEFQGNLL 651
K E FD + +V +R G
Sbjct: 313 FCNAEGQRLQNMLGTISTSQLFIEPDFPEARKLKEWFDKEGRNTPSVSISREVTSMGRTD 372
Query: 652 LMR---EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNG 704
+ + +I+D++LG +K D+ +V + + N Y ACP + CNKKV + +G
Sbjct: 373 VRKTISQIKDERLGTSEKPDWITVCATVSFIKVDNFCYTACPIMIGDRQCNKKVTNNGDG 432
Query: 705 MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA 764
+RCE+C++ + YR IL I D T WVT FQ E E ++ GE
Sbjct: 433 KWRCERCDQSVDDCDYRYILQFQIQDHTGLTWVTAFQ-ECEQ----DDEKFGE------I 481
Query: 765 LKKALFTQYIFRLRAKLEHYN 785
L+ LFT+Y F+L+ K E ++
Sbjct: 482 LRGVLFTKYSFKLKVKEEIFS 502
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 97/326 (29%), Positives = 160/326 (49%), Gaps = 36/326 (11%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K F+ + ND+E+ ++T+ PC +D+ ++P ++ F + + + + +DV+G
Sbjct: 213 PAQKTFNHLRNDHEIFLESTSTIQPCFDDD-NSIPRQQFHFRSISDVESMENNSVVDVIG 271
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V + +S+ K +T KR + L D S SV +TLWG +
Sbjct: 272 VVSFISPSASIMRKNGTET-QKRALHLKDMSGRSVELTLWGN-----------FCNAEGQ 319
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAG 183
R+ G T+S +S L + PD PE KL+ WF + NT +S+ MG
Sbjct: 320 RLQNMLG--TIS---TSQLFIEPDFPEARKLKEWFDKEGRNTPSVSISREVTSMGRTDVR 374
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNG 239
+ +I+D++LG +K D+ +V + + N Y ACP + CNKKV + +G
Sbjct: 375 KTI--SQIKDERLGTSEKPDWITVCATVSFIKVDNFCYTACPIMIGDRQCNKKVTNNGDG 432
Query: 240 MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA 299
+RCE+C++ + YR IL I D T WVT FQ E E ++ GE
Sbjct: 433 KWRCERCDQSVDDCDYRYILQFQIQDHTGLTWVTAFQ-ECEQ----DDEKFGE------I 481
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
L+ LFT+Y F+L+ K E ++ +++
Sbjct: 482 LRGVLFTKYSFKLKVKEEIFSDEQRV 507
>gi|367015496|ref|XP_003682247.1| hypothetical protein TDEL_0F02250 [Torulaspora delbrueckii]
gi|359749909|emb|CCE93036.1| hypothetical protein TDEL_0F02250 [Torulaspora delbrueckii]
Length = 616
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/332 (31%), Positives = 183/332 (55%), Gaps = 15/332 (4%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA +F+++ + YE+S T V C ++ N+P + F L I + +DVLG
Sbjct: 260 PAKPQFTNLTHPYELSMDRDTVVEECFDE--SNVPKTHFSFTKLNAIPNQEANSTVDVLG 317
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+ +T + +K + +RDI +VD S S+T+ LW ++A F+ + V+A K
Sbjct: 318 IIQTVNPQFELTSRAGKK-FDRRDIDIVDDSGYSITVGLWNQQAVDFNLAEGSVVAFKGI 376
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRTGGMGGGAAG 183
RV++F GGK+LS+ +S + NP++PE + L+GW+ + ++ F + Q G GA
Sbjct: 377 RVTDF-GGKSLSMGFTSTMIPNPEVPEAYALKGWYDQKGHSENFSSLKQEAGAASSGANL 435
Query: 184 NLLLMREI-----QDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNN 238
+ + I Q++ LG +K D+ S++G + + N Y AC +++CNKKVI++++
Sbjct: 436 AKFISQRISIATAQNENLGRSEKGDFFSIKGAVNFLKVDNFAYPACSNENCNKKVIEESD 495
Query: 239 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP 298
G +RCEKC+ +R +L + + D T +WVT+F ++A+ +LG+ A E+ ++
Sbjct: 496 GTWRCEKCDTNNQAPDWRYMLTLSVLDETGQMWVTVFNDQAKQLLGIGANELMAMKDNDA 555
Query: 299 AL-----KKALFTQYIFRLRAKLEHYNGTKKI 325
L + QY FR+RA+ ++YN +I
Sbjct: 556 DLFTKTIQGIQMNQYDFRIRAREDNYNNQSRI 587
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 134/228 (58%), Gaps = 6/228 (2%)
Query: 426 HNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL 485
H+ + Q S P+ I LSPYQN WTIKARV+ K I+ W+N +G GKLF+++ L
Sbjct: 167 HDTLGSSSQKSRPIF---AIEQLSPYQNMWTIKARVSYKGDIKTWHNQKGEGKLFNVNFL 223
Query: 486 DESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVI 545
D SGEIRAT FN+ +F++++++ +VYYIS L+PA +F+++ + YE+S T V
Sbjct: 224 DTSGEIRATAFNEMATKFNEILQEGRVYYISKARLQPAKPQFTNLTHPYELSMDRDTVVE 283
Query: 546 PCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRD 605
C ++ N+P + F L I + +DVLG+ +T + +K + +RD
Sbjct: 284 ECFDE--SNVPKTHFSFTKLNAIPNQEANSTVDVLGIIQTVNPQFELTSRAGKK-FDRRD 340
Query: 606 ITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM 653
I +VD S S+T+ LW ++A F+ + V+A K RV++F G L M
Sbjct: 341 IDIVDDSGYSITVGLWNQQAVDFNLAEGSVVAFKGIRVTDFGGKSLSM 388
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 89/154 (57%), Gaps = 5/154 (3%)
Query: 637 AVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNK 696
A A +++F + + Q++ LG +K D+ S++G + + N Y AC +++CNK
Sbjct: 429 ASSGANLAKFISQRISIATAQNENLGRSEKGDFFSIKGAVNFLKVDNFAYPACSNENCNK 488
Query: 697 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG 756
KVI++++G +RCEKC+ +R +L + + D T +WVT+F ++A+ +LG+ A E+
Sbjct: 489 KVIEESDGTWRCEKCDTNNQAPDWRYMLTLSVLDETGQMWVTVFNDQAKQLLGIGANELM 548
Query: 757 ESTEDHPAL-----KKALFTQYIFRLRAKLEHYN 785
++ L + QY FR+RA+ ++YN
Sbjct: 549 AMKDNDADLFTKTIQGIQMNQYDFRIRAREDNYN 582
>gi|159491651|ref|XP_001703773.1| replication protein A, 70 kDa DNA-binding subunit [Chlamydomonas
reinhardtii]
gi|158270454|gb|EDO96299.1| replication protein A, 70 kDa DNA-binding subunit [Chlamydomonas
reinhardtii]
Length = 451
Score = 179 bits (454), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 119/432 (27%), Positives = 195/432 (45%), Gaps = 77/432 (17%)
Query: 428 NVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD- 486
N AI R + P + PI +L+PY +W I+ARVT+K +R W N RG GK+FS DLLD
Sbjct: 9 NGAIARDDAPP--RFIPISALNPYTARWAIRARVTSKGELRRWTNVRGEGKVFSFDLLDK 66
Query: 487 ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIP 546
+ GEIRAT F E ++F +++E +Y IS +L +F+ N+ YE+ ++ V
Sbjct: 67 DGGEIRATAFGAEADKFFEVVEAGAIYQISKASLTNKRPQFNHTNHQYEIKLDRNSMVER 126
Query: 547 CNED-EVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRD 605
ED E +P++ Y F + + +D++GV ++T +T ++T KR
Sbjct: 127 VAEDPETSQIPTISYNFRRITDLETAEAGTVVDIIGVVETCEPWQTITRRTGEET-QKRS 185
Query: 606 ITLVDQSQASVTMTLWG--------KEAETFDASNKPVIAVKAARVSEFQGNLL------ 651
+ + D S S+ +TLWG + + +PV+A KA RV ++ G L
Sbjct: 186 MVVRDDSGRSIEVTLWGALVNNPGDQIEQMVRGGGRPVLAAKALRVGDYNGKTLSTVGAS 245
Query: 652 -----------------------------------------------LMREIQDQQLGMG 664
++ I+D+ LG
Sbjct: 246 ALRLDPMDLPAAQRVRGWYNGGGKAQAVNSLSAAGGGGGGGRTDRRTVLSAIKDENLGRS 305
Query: 665 DKADYCSVRGIIQVFRG--SNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTF 718
KAD+ +V ++ + +G S Y +CP + C KK++D G + C++C
Sbjct: 306 GKADWVNVSAVLDMIKGGASAVVYPSCPHDFNGRPCQKKMMDVGGGNWNCDRCQFSTENP 365
Query: 719 TYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKAL-----FTQY 773
+R ++ + D T +T F + ++I G +A EV D P L FT +
Sbjct: 366 AWRYLVSLSACDHTAKQSLTAFGDAGDAIFGRSATEVRNMEVDRPQEFDRLAESIRFTPF 425
Query: 774 IFRLRAKLEHYN 785
FRL+ ++YN
Sbjct: 426 FFRLKVAEDNYN 437
Score = 129 bits (324), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 164/339 (48%), Gaps = 24/339 (7%)
Query: 9 KFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCI 67
+F+ N+ YE+ ++ V ED E +P++ Y F + + +D++GV
Sbjct: 106 QFNHTNHQYEIKLDRNSMVERVAEDPETSQIPTISYNFRRITDLETAEAGTVVDIIGVVE 165
Query: 68 DAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG--------KEAETFDASNKPVI 119
++T +T ++T KR + + D S S+ +TLWG + + +PV+
Sbjct: 166 TCEPWQTITRRTGEET-QKRSMVVRDDSGRSIEVTLWGALVNNPGDQIEQMVRGGGRPVL 224
Query: 120 AVKAARVSEFQGGKTLSLSMSSVLSLNP-DIPECHKLQGWFSTQTNTR-FEPVSQRTGGM 177
A KA RV ++ G KTLS +S L L+P D+P +++GW++ + +S GG
Sbjct: 225 AAKALRVGDYNG-KTLSTVGASALRLDPMDLPAAQRVRGWYNGGGKAQAVNSLSAAGGGG 283
Query: 178 GGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRG--SNTTYKACP----SQDCNK 231
GGG ++ I+D+ LG KAD+ +V ++ + +G S Y +CP + C K
Sbjct: 284 GGGRTDRRTVLSAIKDENLGRSGKADWVNVSAVLDMIKGGASAVVYPSCPHDFNGRPCQK 343
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG 291
K++D G + C++C +R ++ + D T +T F + ++I G +A EV
Sbjct: 344 KMMDVGGGNWNCDRCQFSTENPAWRYLVSLSACDHTAKQSLTAFGDAGDAIFGRSATEVR 403
Query: 292 ESTEDHPALKKAL-----FTQYIFRLRAKLEHYNGTKKI 325
D P L FT + FRL+ ++YN ++I
Sbjct: 404 NMEVDRPQEFDRLAESIRFTPFFFRLKVAEDNYNDEQRI 442
>gi|449440852|ref|XP_004138198.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Cucumis sativus]
Length = 603
Score = 179 bits (453), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 148/541 (27%), Positives = 241/541 (44%), Gaps = 101/541 (18%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
DGV + A+L + L + G + +++I Y ++ + + S LI+ + ++
Sbjct: 48 DGV-MKLKAILPSNLTSDVISGNIQNLGLIRILDYSLNDIPNKS---EKYLIVTKCEVVS 103
Query: 387 PGTEIGFKIGNPQPLNTNTDNSSTQQTPAA--TNTNGSNGVHN---NVAIPRQASAPVVQ 441
P E K T+ + T P + + VH N+A P + +
Sbjct: 104 PALEKEVKT------EVKTEEAGTILKPKQELVAKSAAQIVHEQRMNMA-PAARMSMTRR 156
Query: 442 THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDEC 500
P+V L+PY WTIK RVT+K +R + NA+G G +F++ L DE G +I+ATMFND
Sbjct: 157 VQPLVYLNPYLGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLTDEDGTQIQATMFNDAA 216
Query: 501 NRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN----MP 556
+F++ KVYY+S TLK ANKKF ++ NDYEM+ ++ V DEV N +P
Sbjct: 217 RKFYEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQV-----DEVSNEAAFVP 271
Query: 557 SVKYCFVPLKTIA-EISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ---- 611
KY FV + + ++ + +DV+GV + + S+ K N +T KRD+T+ D+
Sbjct: 272 ETKYNFVKIDMLGPHVNGRDLVDVIGVVQNVSSTMSIRRKINNETAPKRDVTIADETKKT 331
Query: 612 ---------------------------------------------SQASVTMTLWGKEAE 626
S++S+T+ KEA
Sbjct: 332 VVISLWNDLATTVGQELLDIADQSPIIALKYLRVGDFQGVSLSTISRSSITINPDIKEAH 391
Query: 627 T----FDASNKPVIA----------VKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSV 672
+D+ K V K+ S + + L ++++ LG +K + S+
Sbjct: 392 DLRSWYDSEGKAVSMSSVSSGLSPSTKSGSRSMYSDRISLSHILENKSLG-EEKPTFFSI 450
Query: 673 RGIIQVFRGSNTT-YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDW 731
R + + T Y+AC + CNKKV + Y C+ C K + R I+ V + D
Sbjct: 451 RAYVSFIKPDQTMWYRACKT--CNKKVTEAIGSGYWCDNCQKNDEECSLRYIMVVRVSDA 508
Query: 732 TNSVWVTLFQNEAESILGVTAQE-------VGESTEDHPALKKALFTQYIFRLRAKLEHY 784
+ WV+ F EAE I+G +A E +GE LK+A + ++FR+ Y
Sbjct: 509 SGEAWVSTFNEEAERIMGCSADELDQLKSQIGEENSYQLKLKEATWVPHLFRVSVSQNEY 568
Query: 785 N 785
N
Sbjct: 569 N 569
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/344 (29%), Positives = 171/344 (49%), Gaps = 34/344 (9%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN----MPSVKYCFVPLKTIA-EISPDENI 60
ANKKF ++ NDYEM+ ++ V DEV N +P KY FV + + ++ + +
Sbjct: 239 ANKKFKTVQNDYEMTLNVNSQV-----DEVSNEAAFVPETKYNFVKIDMLGPHVNGRDLV 293
Query: 61 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD------AS 114
DV+GV + + S+ K N +T KRD+T+ D+++ +V ++LW A T A
Sbjct: 294 DVIGVVQNVSSTMSIRRKINNETAPKRDVTIADETKKTVVISLWNDLATTVGQELLDIAD 353
Query: 115 NKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ------TNTRFE 168
P+IA+K RV +FQG ++S SS+ ++NPDI E H L+ W+ ++ ++
Sbjct: 354 QSPIIALKYLRVGDFQGVSLSTISRSSI-TINPDIKEAHDLRSWYDSEGKAVSMSSVSSG 412
Query: 169 PVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQ 227
G + + L ++++ LG +K + S+R + + T Y+AC +
Sbjct: 413 LSPSTKSGSRSMYSDRISLSHILENKSLG-EEKPTFFSIRAYVSFIKPDQTMWYRACKT- 470
Query: 228 DCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA 287
CNKKV + Y C+ C K + R I+ V + D + WV+ F EAE I+G +A
Sbjct: 471 -CNKKVTEAIGSGYWCDNCQKNDEECSLRYIMVVRVSDASGEAWVSTFNEEAERIMGCSA 529
Query: 288 QE-------VGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKK 324
E +GE LK+A + ++FR+ YN K+
Sbjct: 530 DELDQLKSQIGEENSYQLKLKEATWVPHLFRVSVSQNEYNNEKR 573
>gi|449525283|ref|XP_004169647.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Cucumis sativus]
Length = 560
Score = 178 bits (452), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 148/541 (27%), Positives = 241/541 (44%), Gaps = 101/541 (18%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
DGV + A+L + L + G + +++I Y ++ + + S LI+ + ++
Sbjct: 5 DGV-MKLKAILPSNLTSDVISGNIQNLGLIRILDYSLNDIPNKS---EKYLIVTKCEVVS 60
Query: 387 PGTEIGFKIGNPQPLNTNTDNSSTQQTPAA--TNTNGSNGVHN---NVAIPRQASAPVVQ 441
P E K T+ + T P + + VH N+A P + +
Sbjct: 61 PALEKEVKT------EVKTEEAGTILKPKQELVAKSAAQIVHEQRMNMA-PAARMSMTRR 113
Query: 442 THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDEC 500
P+V L+PY WTIK RVT+K +R + NA+G G +F++ L DE G +I+ATMFND
Sbjct: 114 VQPLVYLNPYLGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLTDEDGTQIQATMFNDAA 173
Query: 501 NRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN----MP 556
+F++ KVYY+S TLK ANKKF ++ NDYEM+ ++ V DEV N +P
Sbjct: 174 RKFYEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQV-----DEVSNEAAFVP 228
Query: 557 SVKYCFVPLKTIA-EISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ---- 611
KY FV + + ++ + +DV+GV + + S+ K N +T KRD+T+ D+
Sbjct: 229 ETKYNFVKIDMLGPHVNGRDLVDVIGVVQNVSSTMSIRRKINNETAPKRDVTIADETKKT 288
Query: 612 ---------------------------------------------SQASVTMTLWGKEAE 626
S++S+T+ KEA
Sbjct: 289 VVISLWNDLATTVGQELLDIADQSPIIALKYLRVGDFQGVSLSTISRSSITINPDIKEAH 348
Query: 627 T----FDASNKPVIA----------VKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSV 672
+D+ K V K+ S + + L ++++ LG +K + S+
Sbjct: 349 DLRSWYDSEGKAVSMSSVSSGLSPSTKSGSRSMYSDRISLSHILENKSLG-EEKPTFFSI 407
Query: 673 RGIIQVFRGSNTT-YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDW 731
R + + T Y+AC + CNKKV + Y C+ C K + R I+ V + D
Sbjct: 408 RAYVSFIKPDQTMWYRACKT--CNKKVTEAIGSGYWCDNCQKNDEECSLRYIMVVRVSDA 465
Query: 732 TNSVWVTLFQNEAESILGVTAQE-------VGESTEDHPALKKALFTQYIFRLRAKLEHY 784
+ WV+ F EAE I+G +A E +GE LK+A + ++FR+ Y
Sbjct: 466 SGEAWVSTFNEEAERIMGCSADELDQLKSQIGEENSYQLKLKEATWVPHLFRVSVSQNEY 525
Query: 785 N 785
N
Sbjct: 526 N 526
Score = 157 bits (396), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 103/344 (29%), Positives = 171/344 (49%), Gaps = 34/344 (9%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN----MPSVKYCFVPLKTIA-EISPDENI 60
ANKKF ++ NDYEM+ ++ V DEV N +P KY FV + + ++ + +
Sbjct: 196 ANKKFKTVQNDYEMTLNVNSQV-----DEVSNEAAFVPETKYNFVKIDMLGPHVNGRDLV 250
Query: 61 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD------AS 114
DV+GV + + S+ K N +T KRD+T+ D+++ +V ++LW A T A
Sbjct: 251 DVIGVVQNVSSTMSIRRKINNETAPKRDVTIADETKKTVVISLWNDLATTVGQELLDIAD 310
Query: 115 NKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ------TNTRFE 168
P+IA+K RV +FQG ++S SS+ ++NPDI E H L+ W+ ++ ++
Sbjct: 311 QSPIIALKYLRVGDFQGVSLSTISRSSI-TINPDIKEAHDLRSWYDSEGKAVSMSSVSSG 369
Query: 169 PVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQ 227
G + + L ++++ LG +K + S+R + + T Y+AC +
Sbjct: 370 LSPSTKSGSRSMYSDRISLSHILENKSLG-EEKPTFFSIRAYVSFIKPDQTMWYRACKT- 427
Query: 228 DCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA 287
CNKKV + Y C+ C K + R I+ V + D + WV+ F EAE I+G +A
Sbjct: 428 -CNKKVTEAIGSGYWCDNCQKNDEECSLRYIMVVRVSDASGEAWVSTFNEEAERIMGCSA 486
Query: 288 QE-------VGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKK 324
E +GE LK+A + ++FR+ YN K+
Sbjct: 487 DELDQLKSQIGEENSYQLKLKEATWVPHLFRVSVSQNEYNNEKR 530
>gi|297831712|ref|XP_002883738.1| hypothetical protein ARALYDRAFT_899421 [Arabidopsis lyrata subsp.
lyrata]
gi|297329578|gb|EFH59997.1| hypothetical protein ARALYDRAFT_899421 [Arabidopsis lyrata subsp.
lyrata]
Length = 640
Score = 178 bits (452), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 126/376 (33%), Positives = 190/376 (50%), Gaps = 64/376 (17%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DGV+ AM+A QLND + G + + +IVQ+ YI S V R ++++L +
Sbjct: 47 ISDGVSAQ-HAMVAVQLNDRVKSGQVEKGSIVQLIDYICSDVKG-----RKLIVVLNMET 100
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGV--------HN-NVAIPR-- 433
I P +E IGNP + TD + + A N N V H+ N A PR
Sbjct: 101 IVPHSET---IGNPT-IFGETDTEAQKPLSAVGNIPPPNRVVFNEPTAQHSVNRAPPRGV 156
Query: 434 --------------------------QASAPVVQTH------PIVSLSPYQNKWTIKARV 461
+ P+++ PI +L+PYQ +W IKARV
Sbjct: 157 NIQNPANSTPSFRPSVQPSYQPPASYRNHGPIMKNEAPARVIPIAALNPYQGRWAIKARV 216
Query: 462 TNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTL 520
T K IR +NNA+G GK++S DLLD + GEIR T FN +RF+D+ E KVY IS +L
Sbjct: 217 TAKGDIRRYNNAKGDGKVYSFDLLDSDGGEIRVTCFNAVADRFYDVTEVGKVYLISKGSL 276
Query: 521 KPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVL 580
KPA K ++ + N++E+ F ST+ + DE G++P ++ F P+ I + +DV+
Sbjct: 277 KPAQKNYNHLKNEWEI-FLESTSTVELCPDEDGSIPRQQFSFRPISDIENAENNTILDVI 335
Query: 581 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG--------KEAETFDASN 632
GV + K +T+ +R + L D+S +V +TLWG + E D++
Sbjct: 336 GVVTSVNPSVPILRKNGMETH-RRILNLKDESGKAVEVTLWGEFCNRDGRQLEEMVDSAF 394
Query: 633 KPVIAVKAARVSEFQG 648
PV+A+KA +VS+F G
Sbjct: 395 HPVLAIKAGKVSDFSG 410
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/343 (30%), Positives = 178/343 (51%), Gaps = 27/343 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K ++ + N++E+ F ST+ + DE G++P ++ F P+ I + +DV+G
Sbjct: 278 PAQKNYNHLKNEWEI-FLESTSTVELCPDEDGSIPRQQFSFRPISDIENAENNTILDVIG 336
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG--------KEAETFDASNK 116
V + K +T+ +R + L D+S +V +TLWG + E D++
Sbjct: 337 VVTSVNPSVPILRKNGMETH-RRILNLKDESGKAVEVTLWGEFCNRDGRQLEEMVDSAFH 395
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTG 175
PV+A+KA +VS+F GK++ S+ L +NPD PE HKL+ WF +T +S+ T
Sbjct: 396 PVLAIKAGKVSDF-SGKSVGTISSTQLFINPDFPEAHKLRTWFDHGGKDTASFSISRDT- 453
Query: 176 GMGGGAAGNLLL--MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDC 229
M GG + N + + +I+++ LG DK D+ +V+ I + + Y ACP + C
Sbjct: 454 -MPGGVSRNEIRKSVSQIKEEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDKQC 512
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
NKKV + C++CN+E + YR +L V I D T W+T FQ E I+G A++
Sbjct: 513 NKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLTWITAFQETGEEIMGCPAKK 572
Query: 290 V-------GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ + E ++ LF QY+ +L+ K E Y +++
Sbjct: 573 LYALKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQRV 615
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 11/141 (7%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEK 710
+I+++ LG DK D+ +V+ I + + Y ACP + CNKKV + C++
Sbjct: 469 QIKEEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDKQCNKKVTRSGTNRWLCDR 528
Query: 711 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-------GESTEDHP 763
CN+E + YR +L V I D T W+T FQ E I+G A+++ + E
Sbjct: 529 CNQESDECDYRYLLQVQIQDHTGLTWITAFQETGEEIMGCPAKKLYALKYELEKEEEFAE 588
Query: 764 ALKKALFTQYIFRLRAKLEHY 784
++ LF QY+ +L+ K E Y
Sbjct: 589 IVRDRLFHQYMLKLKIKEESY 609
>gi|297806837|ref|XP_002871302.1| hypothetical protein ARALYDRAFT_325405 [Arabidopsis lyrata subsp.
lyrata]
gi|297317139|gb|EFH47561.1| hypothetical protein ARALYDRAFT_325405 [Arabidopsis lyrata subsp.
lyrata]
Length = 604
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/330 (35%), Positives = 178/330 (53%), Gaps = 15/330 (4%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
DG N+ AML L I G + +V++ Y V+ + S ++ E
Sbjct: 48 DG-NMKMKAMLPATLTCEIISGKIQNLGLVRLLDYTVNDIPGKSEEKYMLITKCEAVASA 106
Query: 387 PGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIV 446
+EI +I +T Q+ A + + N N A P A + HP+V
Sbjct: 107 LDSEIKAEI----KASTGITLKPKQEFVAKSASQIINEQRGNAA-PAARMAMTRRVHPLV 161
Query: 447 SLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNRFHD 505
SL+PYQ WTI+ RVTNK +R +NNARG G +F+++L DE G +I+ATMFN +F+D
Sbjct: 162 SLNPYQGSWTIRVRVTNKGVMRTYNNARGEGCVFNVELTDEEGTQIQATMFNAAARKFYD 221
Query: 506 MIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPL 565
E KVYYIS +LK ANK+F ++ NDYEM+ ++ V + +E+ P +K+ FVP+
Sbjct: 222 RFEMGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASNEEMFT-PEIKFNFVPI 280
Query: 566 KTIAE-ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW--- 621
+ ++ + IDV+GV + S+ K + + KRDITL D+S+ +V ++LW
Sbjct: 281 DELGTYVNQKDLIDVIGVVQCVSPTMSIRRKNDNEMIPKRDITLADESKNTVVVSLWNDL 340
Query: 622 --GKEAETFD-ASNKPVIAVKAARVSEFQG 648
G E D A N PVIA+K+ +V +FQG
Sbjct: 341 ATGIGQELLDMADNHPVIAIKSLKVGDFQG 370
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 109/342 (31%), Positives = 176/342 (51%), Gaps = 30/342 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE-ISPDENIDVLG 64
ANK+F ++ NDYEM+ ++ V + +E+ P +K+ FVP+ + ++ + IDV+G
Sbjct: 239 ANKQFKTVQNDYEMTLNENSEVEEASNEEMFT-PEIKFNFVPIDELGTYVNQKDLIDVIG 297
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW-----GKEAETFD-ASNKPV 118
V + S+ K + + KRDITL D+S+ +V ++LW G E D A N PV
Sbjct: 298 VVQCVSPTMSIRRKNDNEMIPKRDITLADESKNTVVVSLWNDLATGIGQELLDMADNHPV 357
Query: 119 IAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMG 178
IA+K+ +V +FQG ++S S+V+ +NPD PE KL+ W+ + + +S GM
Sbjct: 358 IAIKSLKVGDFQGVSLSTISRSNVV-INPDSPEAKKLKSWYDAEG--KETSMSAIGSGMS 414
Query: 179 GGA--------AGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDC 229
A + + L + LG +K + S+R I + T Y+AC + C
Sbjct: 415 SSANNGSRSMYSDRVFLSHITSNPSLG-EEKPVFFSIRAYISFIKPDQTMWYRACKT--C 471
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
NKKV + + Y CE C K+ + R I+ V + D T W + F +EAE I+G TA E
Sbjct: 472 NKKVTEAMDSGYWCEGCQKKDQECSLRYIMAVKVSDSTGETWFSAFNDEAEKIIGCTADE 531
Query: 290 V-------GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKK 324
+ GE E LK+ ++ ++FR+ + YN K+
Sbjct: 532 LNNLKSEEGEVNEFQTKLKETTWSSHLFRISVSQQEYNSEKR 573
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 10/129 (7%)
Query: 665 DKADYCSVRGIIQVFRGSNTT-YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLI 723
+K + S+R I + T Y+AC + CNKKV + + Y CE C K+ + R I
Sbjct: 443 EKPVFFSIRAYISFIKPDQTMWYRACKT--CNKKVTEAMDSGYWCEGCQKKDQECSLRYI 500
Query: 724 LPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-------GESTEDHPALKKALFTQYIFR 776
+ V + D T W + F +EAE I+G TA E+ GE E LK+ ++ ++FR
Sbjct: 501 MAVKVSDSTGETWFSAFNDEAEKIIGCTADELNNLKSEEGEVNEFQTKLKETTWSSHLFR 560
Query: 777 LRAKLEHYN 785
+ + YN
Sbjct: 561 ISVSQQEYN 569
>gi|42570719|ref|NP_973433.1| replication factor A1 [Arabidopsis thaliana]
gi|330250915|gb|AEC06009.1| replication factor A1 [Arabidopsis thaliana]
Length = 617
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 128/376 (34%), Positives = 189/376 (50%), Gaps = 64/376 (17%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DGV+ AM+A QLND + G + +IVQ+ YI S V R ++++L +
Sbjct: 24 ISDGVSAQH-AMVAVQLNDRVKSGQFEKGSIVQLIDYICSDVKG-----RKLIVVLNMET 77
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGV--------HN-NVAIPR-- 433
I +E IGNP + TD + + N N V H+ N A PR
Sbjct: 78 IVQQSET---IGNPT-IFGETDTEAQKTFSGTGNIPPPNRVVFNEPMVQHSVNRAPPRGV 133
Query: 434 ----QAS----------------------APVVQTH------PIVSLSPYQNKWTIKARV 461
QA+ P+++ PI +L+PYQ +W IKARV
Sbjct: 134 NIQNQANNTPSFRPSVQPSYQPPASYRNHGPIMKNEAPARVIPIAALNPYQGRWAIKARV 193
Query: 462 TNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTL 520
T K IR +NNA+G GK+FS DLLD + GEIR T FN +RF+D+ E KVY IS +L
Sbjct: 194 TAKGDIRRYNNAKGDGKVFSFDLLDYDGGEIRVTCFNALVDRFYDVTEVGKVYLISKGSL 253
Query: 521 KPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVL 580
KPA K F+ + N++E+ F ST+ + DE G++P ++ F P+ I + +DV+
Sbjct: 254 KPAQKNFNHLKNEWEI-FLESTSTVELCPDEDGSIPKQQFSFRPISDIENAENNTILDVI 312
Query: 581 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG--------KEAETFDASN 632
GV + K +T+ +R + L D+S +V +TLWG + E D++
Sbjct: 313 GVVTSVNPSVPILRKNGMETH-RRILNLKDESGKAVEVTLWGEFCNRDGRQLEEMVDSAF 371
Query: 633 KPVIAVKAARVSEFQG 648
PV+A+KA +VS+F G
Sbjct: 372 HPVLAIKAGKVSDFSG 387
Score = 169 bits (427), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 107/343 (31%), Positives = 178/343 (51%), Gaps = 27/343 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K F+ + N++E+ F ST+ + DE G++P ++ F P+ I + +DV+G
Sbjct: 255 PAQKNFNHLKNEWEI-FLESTSTVELCPDEDGSIPKQQFSFRPISDIENAENNTILDVIG 313
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG--------KEAETFDASNK 116
V + K +T+ +R + L D+S +V +TLWG + E D++
Sbjct: 314 VVTSVNPSVPILRKNGMETH-RRILNLKDESGKAVEVTLWGEFCNRDGRQLEEMVDSAFH 372
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTG 175
PV+A+KA +VS+F GK++ S+ L +NPD PE HKL+ WF +T +S+ T
Sbjct: 373 PVLAIKAGKVSDF-SGKSVGTISSTQLFINPDFPEAHKLRTWFDYGGKDTASFSISRDT- 430
Query: 176 GMGGGAAGNLLL--MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDC 229
M GG + N + + +I+++ LG DK D+ +V+ I + + Y ACP + C
Sbjct: 431 -MPGGVSRNEIRKNVSQIKEEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDKQC 489
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
NKKV + C++CN+E + YR +L V I D T W+T FQ E I+G A++
Sbjct: 490 NKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLTWITAFQETGEEIMGCPAKK 549
Query: 290 V-------GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ + E ++ LF QY+ +L+ K E Y +++
Sbjct: 550 LYAMKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQRV 592
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 11/141 (7%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEK 710
+I+++ LG DK D+ +V+ I + + Y ACP + CNKKV + C++
Sbjct: 446 QIKEEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDKQCNKKVTRSGTNRWLCDR 505
Query: 711 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-------GESTEDHP 763
CN+E + YR +L V I D T W+T FQ E I+G A+++ + E
Sbjct: 506 CNQESDECDYRYLLQVQIQDHTGLTWITAFQETGEEIMGCPAKKLYAMKYELEKEEEFAE 565
Query: 764 ALKKALFTQYIFRLRAKLEHY 784
++ LF QY+ +L+ K E Y
Sbjct: 566 IVRDRLFHQYMLKLKIKEESY 586
>gi|15225129|ref|NP_178690.1| replication factor A1 [Arabidopsis thaliana]
gi|4584356|gb|AAD25150.1| putative replication protein A1 [Arabidopsis thaliana]
gi|26452416|dbj|BAC43293.1| putative replication protein A1 [Arabidopsis thaliana]
gi|29029004|gb|AAO64881.1| At2g06510 [Arabidopsis thaliana]
gi|330250916|gb|AEC06010.1| replication factor A1 [Arabidopsis thaliana]
Length = 640
Score = 175 bits (444), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 128/376 (34%), Positives = 189/376 (50%), Gaps = 64/376 (17%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DGV+ AM+A QLND + G + +IVQ+ YI S V R ++++L +
Sbjct: 47 ISDGVSAQH-AMVAVQLNDRVKSGQFEKGSIVQLIDYICSDVKG-----RKLIVVLNMET 100
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGV--------HN-NVAIPR-- 433
I +E IGNP + TD + + N N V H+ N A PR
Sbjct: 101 IVQQSET---IGNPT-IFGETDTEAQKTFSGTGNIPPPNRVVFNEPMVQHSVNRAPPRGV 156
Query: 434 ----QAS----------------------APVVQTH------PIVSLSPYQNKWTIKARV 461
QA+ P+++ PI +L+PYQ +W IKARV
Sbjct: 157 NIQNQANNTPSFRPSVQPSYQPPASYRNHGPIMKNEAPARVIPIAALNPYQGRWAIKARV 216
Query: 462 TNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTL 520
T K IR +NNA+G GK+FS DLLD + GEIR T FN +RF+D+ E KVY IS +L
Sbjct: 217 TAKGDIRRYNNAKGDGKVFSFDLLDYDGGEIRVTCFNALVDRFYDVTEVGKVYLISKGSL 276
Query: 521 KPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVL 580
KPA K F+ + N++E+ F ST+ + DE G++P ++ F P+ I + +DV+
Sbjct: 277 KPAQKNFNHLKNEWEI-FLESTSTVELCPDEDGSIPKQQFSFRPISDIENAENNTILDVI 335
Query: 581 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG--------KEAETFDASN 632
GV + K +T+ +R + L D+S +V +TLWG + E D++
Sbjct: 336 GVVTSVNPSVPILRKNGMETH-RRILNLKDESGKAVEVTLWGEFCNRDGRQLEEMVDSAF 394
Query: 633 KPVIAVKAARVSEFQG 648
PV+A+KA +VS+F G
Sbjct: 395 HPVLAIKAGKVSDFSG 410
Score = 169 bits (427), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 107/343 (31%), Positives = 178/343 (51%), Gaps = 27/343 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K F+ + N++E+ F ST+ + DE G++P ++ F P+ I + +DV+G
Sbjct: 278 PAQKNFNHLKNEWEI-FLESTSTVELCPDEDGSIPKQQFSFRPISDIENAENNTILDVIG 336
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG--------KEAETFDASNK 116
V + K +T+ +R + L D+S +V +TLWG + E D++
Sbjct: 337 VVTSVNPSVPILRKNGMETH-RRILNLKDESGKAVEVTLWGEFCNRDGRQLEEMVDSAFH 395
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTG 175
PV+A+KA +VS+F GK++ S+ L +NPD PE HKL+ WF +T +S+ T
Sbjct: 396 PVLAIKAGKVSDF-SGKSVGTISSTQLFINPDFPEAHKLRTWFDYGGKDTASFSISRDT- 453
Query: 176 GMGGGAAGNLLL--MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDC 229
M GG + N + + +I+++ LG DK D+ +V+ I + + Y ACP + C
Sbjct: 454 -MPGGVSRNEIRKNVSQIKEEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDKQC 512
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
NKKV + C++CN+E + YR +L V I D T W+T FQ E I+G A++
Sbjct: 513 NKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLTWITAFQETGEEIMGCPAKK 572
Query: 290 V-------GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ + E ++ LF QY+ +L+ K E Y +++
Sbjct: 573 LYAMKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQRV 615
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 11/141 (7%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEK 710
+I+++ LG DK D+ +V+ I + + Y ACP + CNKKV + C++
Sbjct: 469 QIKEEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDKQCNKKVTRSGTNRWLCDR 528
Query: 711 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-------GESTEDHP 763
CN+E + YR +L V I D T W+T FQ E I+G A+++ + E
Sbjct: 529 CNQESDECDYRYLLQVQIQDHTGLTWITAFQETGEEIMGCPAKKLYAMKYELEKEEEFAE 588
Query: 764 ALKKALFTQYIFRLRAKLEHY 784
++ LF QY+ +L+ K E Y
Sbjct: 589 IVRDRLFHQYMLKLKIKEESY 609
>gi|195649695|gb|ACG44315.1| replication protein A 70 kDa DNA-binding subunit [Zea mays]
Length = 618
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 128/416 (30%), Positives = 200/416 (48%), Gaps = 75/416 (18%)
Query: 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDE 499
+ HP+++L+PYQ W IK RVT+K +R + NARG G +F+++L DE G +I+ATMFND
Sbjct: 173 RVHPLITLNPYQGNWVIKVRVTSKGNLRTYRNARGEGCVFNVELTDEDGTQIQATMFNDA 232
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN--MPS 557
+F+ + E VYY+S +L+ ANK+F ++ NDYEMS + V E+ G +P
Sbjct: 233 AKKFYPIFELGNVYYVSKGSLRIANKQFKTVQNDYEMSLNENAIV----EEAEGETCIPQ 288
Query: 558 VKYCFVPLKTIAE-ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
V+Y V + + + E +D++GV + SV K + +T KRDI + D S +V
Sbjct: 289 VQYNLVKIDQLGSYVGGRELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTV 348
Query: 617 TMTLWGKEA-----ETFD-ASNKPVIAVKAARVSEFQG---------NLLLMREIQDQQ- 660
+++LW A E D A + PV+A+K+ +VS+FQG L + ++ + Q
Sbjct: 349 SISLWNDLATTTGQELLDMADSSPVVAIKSLKVSDFQGVSLSTVGKSTLAINPDLHEAQN 408
Query: 661 -----LGMGDKADYCSVRGIIQVFR--GSNTTYK---------ACPSQDCNKKVI----- 699
G + + R G +TY + P+ K V
Sbjct: 409 LKSWYDSEGKDTSLAPIGAEMGAARAGGFKSTYSDRVFLSHITSDPAMGQEKPVFFSLYA 468
Query: 700 -------DQNNGMYRCEKCNKEF-NTF----------------TYRLILPVMIGDWTNSV 735
DQN C+ CNK+ TF + R I+ V + D T
Sbjct: 469 TISHIKPDQNMWYRACKTCNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEA 528
Query: 736 WVTLFQNEAESILGVTAQEVG----ESTEDHPA--LKKALFTQYIFRLRAKLEHYN 785
WV++F AE I+G +A E+ E +D A LK+A + ++FR+ YN
Sbjct: 529 WVSVFNEHAEKIIGCSADELDRIRKEEGDDSYALKLKEATWVPHLFRVSVTQHEYN 584
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/340 (30%), Positives = 167/340 (49%), Gaps = 28/340 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN--MPSVKYCFVPLKTIAE-ISPDENIDV 62
ANK+F ++ NDYEMS + V E+ G +P V+Y V + + + E +D+
Sbjct: 256 ANKQFKTVQNDYEMSLNENAIV----EEAEGETCIPQVQYNLVKIDQLGSYVGGRELVDI 311
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ETFD-ASNK 116
+GV + SV K + +T KRDI + D S +V+++LW A E D A +
Sbjct: 312 VGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVSISLWNDLATTTGQELLDMADSS 371
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPV----- 170
PV+A+K+ +VS+FQG +LS S L++NPD+ E L+ W+ ++ +T P+
Sbjct: 372 PVVAIKSLKVSDFQG-VSLSTVGKSTLAINPDLHEAQNLKSWYDSEGKDTSLAPIGAEMG 430
Query: 171 SQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCN 230
+ R GG + + L D +G + I + N Y+AC + CN
Sbjct: 431 AARAGGFKSTYSDRVFLSHITSDPAMGQEKPVFFSLYATISHIKPDQNMWYRACKT--CN 488
Query: 231 KKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 290
KKV + Y CE C K + + R I+ V + D T WV++F AE I+G +A E+
Sbjct: 489 KKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSVFNEHAEKIIGCSADEL 548
Query: 291 G----ESTEDHPA--LKKALFTQYIFRLRAKLEHYNGTKK 324
E +D A LK+A + ++FR+ YN K+
Sbjct: 549 DRIRKEEGDDSYALKLKEATWVPHLFRVSVTQHEYNNEKR 588
>gi|15241489|ref|NP_196419.1| RPA70-kDa subunit B [Arabidopsis thaliana]
gi|6562316|emb|CAB62614.1| replication factor A-like protein [Arabidopsis thaliana]
gi|332003852|gb|AED91235.1| RPA70-kDa subunit B [Arabidopsis thaliana]
Length = 604
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 138/227 (60%), Gaps = 9/227 (3%)
Query: 430 AIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG 489
A P A + HP+VSL+PYQ WTIK RVTNK +R + NARG G +F+++L DE G
Sbjct: 145 AAPAARMAMTRRVHPLVSLNPYQGSWTIKVRVTNKGVMRTYKNARGEGCVFNVELTDEEG 204
Query: 490 -EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
+I+ATMFN +F+D E KVYYIS +LK ANK+F ++ NDYEM+ ++ V +
Sbjct: 205 TQIQATMFNAAARKFYDRFEMGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEAS 264
Query: 549 EDEVGNMPSVKYCFVPLKTIAE-ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDIT 607
+E+ P K+ FVP+ + ++ + IDV+GV + S+ K + + KRDIT
Sbjct: 265 NEEMFT-PETKFNFVPIDELGTYVNQKDLIDVIGVVQSVSPTMSIRRKNDNEMIPKRDIT 323
Query: 608 LVDQSQASVTMTLW-----GKEAETFD-ASNKPVIAVKAARVSEFQG 648
L D+++ +V ++LW G E D A N PVIA+K+ +V FQG
Sbjct: 324 LADETKKTVVVSLWNDLATGIGQELLDMADNHPVIAIKSLKVGAFQG 370
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 108/342 (31%), Positives = 174/342 (50%), Gaps = 30/342 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE-ISPDENIDVLG 64
ANK+F ++ NDYEM+ ++ V + +E+ P K+ FVP+ + ++ + IDV+G
Sbjct: 239 ANKQFKTVQNDYEMTLNENSEVEEASNEEMFT-PETKFNFVPIDELGTYVNQKDLIDVIG 297
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW-----GKEAETFD-ASNKPV 118
V + S+ K + + KRDITL D+++ +V ++LW G E D A N PV
Sbjct: 298 VVQSVSPTMSIRRKNDNEMIPKRDITLADETKKTVVVSLWNDLATGIGQELLDMADNHPV 357
Query: 119 IAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMG 178
IA+K+ +V FQG ++S S+V+ +NP+ PE KL+ W+ + + +S GM
Sbjct: 358 IAIKSLKVGAFQGVSLSTISRSNVV-INPNSPEATKLKSWYDAEG--KETSMSAIGSGMS 414
Query: 179 GGA--------AGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDC 229
A + + L + LG +K + S R I + T Y+AC + C
Sbjct: 415 SSANNGSRSMYSDRVFLSHITSNPSLG-EEKPVFFSTRAYISFIKPDQTMWYRACKT--C 471
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA-- 287
NKKV + + Y CE C K+ + R I+ V + D T W++ F +EAE I+G TA
Sbjct: 472 NKKVTEAMDSGYWCESCQKKDQECSLRYIMAVKVSDSTGETWLSAFNDEAEKIIGCTADD 531
Query: 288 -----QEVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKK 324
E GE E LK+A ++ ++FR+ + YN K+
Sbjct: 532 LNDLKSEEGEVNEFQTKLKEATWSSHLFRISVSQQEYNSEKR 573
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 10/129 (7%)
Query: 665 DKADYCSVRGIIQVFRGSNTT-YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLI 723
+K + S R I + T Y+AC + CNKKV + + Y CE C K+ + R I
Sbjct: 443 EKPVFFSTRAYISFIKPDQTMWYRACKT--CNKKVTEAMDSGYWCESCQKKDQECSLRYI 500
Query: 724 LPVMIGDWTNSVWVTLFQNEAESILGVTA-------QEVGESTEDHPALKKALFTQYIFR 776
+ V + D T W++ F +EAE I+G TA E GE E LK+A ++ ++FR
Sbjct: 501 MAVKVSDSTGETWLSAFNDEAEKIIGCTADDLNDLKSEEGEVNEFQTKLKEATWSSHLFR 560
Query: 777 LRAKLEHYN 785
+ + YN
Sbjct: 561 ISVSQQEYN 569
>gi|149676205|dbj|BAF64713.1| 70 kDa subunit of replication protein A [Ipomoea nil]
Length = 604
Score = 173 bits (438), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 106/324 (32%), Positives = 178/324 (54%), Gaps = 18/324 (5%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
A+L + L+ + G++ +V+I Y ++ + N LI+ + + + E +K
Sbjct: 55 AILQSSLSSEVISGSIQNLGLVRILDYTLNDIP---MKNEKYLIVTKCDAVSSPLEAEYK 111
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNTNGSNGVH--NNVAIPRQASAPVVQTHPIVSLSPYQ 452
G + T + + + + VH N +P A + HP+VSL+PYQ
Sbjct: 112 TG----VKTEENGIVLRPKQEFVAKSAAQIVHEQNGNIVPPARLAMTRRIHPLVSLNPYQ 167
Query: 453 NKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNRFHDMIEKDK 511
WTIK RVT+K +R + NARG G +F+++L D+ G EI+ATMFN +F+D E K
Sbjct: 168 GIWTIKVRVTSKGNMRFYKNARGEGCVFNVELADQDGTEIQATMFNQAARKFYDKFELGK 227
Query: 512 VYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE- 570
VYYIS TL+ ANK+F ++ NDYEM+ ++ V +E +P K+ FV + +
Sbjct: 228 VYYISKGTLRVANKQFKTVQNDYEMTLNENSEVEEAI-NEAAFVPETKFNFVAIDELGSY 286
Query: 571 ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA----- 625
++ E +DV+GV + + S+ K+N + KRDIT+ D+++ +V ++LW A
Sbjct: 287 VNGRELVDVIGVVQNVSSTMSIRRKSNNEMIPKRDITIADETKKTVVVSLWSDLATNVGQ 346
Query: 626 ETFDASNK-PVIAVKAARVSEFQG 648
E D ++K PV+A+++ +V +FQG
Sbjct: 347 ELLDMADKSPVVAIRSVKVGDFQG 370
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/342 (29%), Positives = 177/342 (51%), Gaps = 30/342 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE-ISPDENIDVLG 64
ANK+F ++ NDYEM+ ++ V +E +P K+ FV + + ++ E +DV+G
Sbjct: 239 ANKQFKTVQNDYEMTLNENSEVEEAI-NEAAFVPETKFNFVAIDELGSYVNGRELVDVIG 297
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ETFDASNK-PV 118
V + + S+ K+N + KRDIT+ D+++ +V ++LW A E D ++K PV
Sbjct: 298 VVQNVSSTMSIRRKSNNEMIPKRDITIADETKKTVVVSLWSDLATNVGQELLDMADKSPV 357
Query: 119 IAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMG 178
+A+++ +V +FQG +++ S+VL +NPD+PE KL+ W+ + + ++ G+
Sbjct: 358 VAIRSVKVGDFQGLSLSAITRSTVL-VNPDMPEAKKLRSWYDCEG--KETSLTSVGSGLS 414
Query: 179 GGAAGNLL--------LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDC 229
A G L L+ + LG DK + S++ I + Y+AC + C
Sbjct: 415 SSAKGVLWSMYSDRVSLLHITSNPNLG-EDKPVFFSIKANISFIKPEQAMWYRACKT--C 471
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
NKKV + Y CE C K + R I+ + + D + W+++F +AE I+G +A E
Sbjct: 472 NKKVTEAIGSGYWCEGCQKNDTDCSLRYIVAMRVSDTSGEAWLSVFNEQAEKIIGCSADE 531
Query: 290 V-------GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKK 324
+ G+S+ LK+A + Y+FR+ + YN K+
Sbjct: 532 LDRLRSQDGDSSAYQMKLKEATWVPYLFRVSVTPQEYNNEKR 573
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 11/172 (6%)
Query: 622 GKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRG 681
GKE + + K S + + L+ + LG DK + S++ I +
Sbjct: 401 GKETSLTSVGSGLSSSAKGVLWSMYSDRVSLLHITSNPNLG-EDKPVFFSIKANISFIKP 459
Query: 682 SNTT-YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLF 740
Y+AC + CNKKV + Y CE C K + R I+ + + D + W+++F
Sbjct: 460 EQAMWYRACKT--CNKKVTEAIGSGYWCEGCQKNDTDCSLRYIVAMRVSDTSGEAWLSVF 517
Query: 741 QNEAESILGVTAQEV-------GESTEDHPALKKALFTQYIFRLRAKLEHYN 785
+AE I+G +A E+ G+S+ LK+A + Y+FR+ + YN
Sbjct: 518 NEQAEKIIGCSADELDRLRSQDGDSSAYQMKLKEATWVPYLFRVSVTPQEYN 569
>gi|268530894|ref|XP_002630573.1| C. briggsae CBR-RPA-1 protein [Caenorhabditis briggsae]
gi|74961121|sp|O97472.1|RFA1_CAEBR RecName: Full=Probable replication factor A 73 kDa subunit;
AltName: Full=RP-A p73; AltName: Full=Replication factor
A protein 1; Short=RF-A protein 1
gi|4028997|emb|CAA10310.1| F18A1.5 protein [Caenorhabditis briggsae]
gi|4033360|emb|CAA10466.1| F18A1.5 protein [Caenorhabditis briggsae]
Length = 658
Score = 172 bits (437), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 126/407 (30%), Positives = 196/407 (48%), Gaps = 76/407 (18%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNR 502
PI ++PY N + I V+ K I+ N + K+F+ ++ D +G+ IR T FN+
Sbjct: 225 PIAMVTPYVNNFRIHGMVSRKEDIK--NIPAKNMKIFNFEITDSNGDTIRCTAFNETAES 282
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
FH I ++ YY+S +++ ANKKF++ +DYE++ + + V + G + +
Sbjct: 283 FHSTITENLSYYLSGGSVRQANKKFNNTGHDYEITLRNDSVV-----EAGGELLAAPKLN 337
Query: 563 VPLKTIAEISPD--ENIDVLGVC----IDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
+ ++AEI+ E IDVL + +A E +S G KT KR++ L+D+SQA V
Sbjct: 338 LKRVSLAEIAGHCGEMIDVLVIVEKMDAEATEFTSKAG----KTLTKREMELIDESQALV 393
Query: 617 TMTLWGKEA--ETFDASNKPVIAVKAARVSEFQGNLLL---------------------- 652
+TLWG EA D + VIA K EF G L
Sbjct: 394 RLTLWGDEAIKANVDDYHGKVIAFKGVIPREFNGGYSLGTGSGTRIIPVPEISGVSELYD 453
Query: 653 --------------------MRE-------IQDQQLGM-GDKADYCSVRGIIQVFRGSNT 684
M E +Q+ Q G DK DY SV+ +I ++
Sbjct: 454 WYTTEKPHSELKLISQTSGGMSEAPRTIAGLQEMQFGKDSDKGDYASVKAMITRINPNSA 513
Query: 685 TYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEA 744
YK C S+ C KKVI +++G YRCEKCNK N F + ++ + D T V+VT F + A
Sbjct: 514 LYKGCASEGCQKKVI-ESDGEYRCEKCNKSMNKFKWLYMMQFELSDETGQVYVTAFGDSA 572
Query: 745 ESILGVTAQEVGESTED-----HPALKKALFTQYIFRLRAKLEHYNK 786
++G TAQEVG+ ++ + ++ F ++RLR K+E YN+
Sbjct: 573 AKVVGKTAQEVGDLKDENLNEYNATFERLQFVPKMWRLRCKMETYNE 619
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 110/330 (33%), Positives = 174/330 (52%), Gaps = 29/330 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPD--ENIDVL 63
ANKKF++ +DYE++ + + V + G + + + ++AEI+ E IDVL
Sbjct: 303 ANKKFNNTGHDYEITLRNDSVV-----EAGGELLAAPKLNLKRVSLAEIAGHCGEMIDVL 357
Query: 64 GVC----IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA--ETFDASNKP 117
+ +A E +S GKT KR++ L+D+SQA V +TLWG EA D +
Sbjct: 358 VIVEKMDAEATEFTSKAGKT----LTKREMELIDESQALVRLTLWGDEAIKANVDDYHGK 413
Query: 118 VIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQT-NTRFEPVSQRTGG 176
VIA K EF GG +L + + P+I +L W++T+ ++ + +SQ +GG
Sbjct: 414 VIAFKGVIPREFNGGYSLGTGSGTRIIPVPEISGVSELYDWYTTEKPHSELKLISQTSGG 473
Query: 177 MGGGAAGNLLLMREIQDQQLGM-GDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVID 235
M + +Q+ Q G DK DY SV+ +I ++ YK C S+ C KKVI
Sbjct: 474 MSEAPR----TIAGLQEMQFGKDSDKGDYASVKAMITRINPNSALYKGCASEGCQKKVI- 528
Query: 236 QNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE 295
+++G YRCEKCNK N F + ++ + D T V+VT F + A ++G TAQEVG+ +
Sbjct: 529 ESDGEYRCEKCNKSMNKFKWLYMMQFELSDETGQVYVTAFGDSAAKVVGKTAQEVGDLKD 588
Query: 296 D-----HPALKKALFTQYIFRLRAKLEHYN 320
+ + ++ F ++RLR K+E YN
Sbjct: 589 ENLNEYNATFERLQFVPKMWRLRCKMETYN 618
>gi|226503005|ref|NP_001147118.1| replication protein A1 [Zea mays]
gi|195607412|gb|ACG25536.1| replication protein A 70 kDa DNA-binding subunit [Zea mays]
Length = 618
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 126/416 (30%), Positives = 199/416 (47%), Gaps = 75/416 (18%)
Query: 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDE 499
+ HP+++L+PYQ W IK RVT+K +R + NARG G +F+++L DE G +I+ATMFND
Sbjct: 173 RVHPLITLNPYQGNWVIKVRVTSKGNLRTYRNARGEGCVFNVELTDEDGTQIQATMFNDA 232
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN--MPS 557
+F+ + E KVYY+S +L+ ANK+F ++ NDYEMS + V E+ G +P
Sbjct: 233 AKKFYPIFELGKVYYVSKGSLRIANKQFKTVQNDYEMSLNENAIV----EEAEGETCIPQ 288
Query: 558 VKYCFVPLKTIAE-ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
V+Y V + + + E +D++GV + SV K + +T KRDI + D S +V
Sbjct: 289 VQYNLVKIDQLGSYVGGRELVDIIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTV 348
Query: 617 TMTLWGK-----EAETFD-ASNKPVIAVKAARVSEFQG---------NLLLMREIQDQQ- 660
+++LW E D A + PV+A+K+ +VS+FQG L + ++ + Q
Sbjct: 349 SISLWNDLTTTTGQELLDMADSSPVVAIKSLKVSDFQGVSLSTVGKSTLAINPDLHEAQN 408
Query: 661 -----LGMGDKADYCSVRGIIQVFR--GSNTTYK---------ACPSQDCNKKVI----- 699
G + + R G +TY + P+ K V
Sbjct: 409 LKSWYDSEGKDTSLAPIGAEMGAARAGGFKSTYSDRVFLSHITSDPAMGQEKPVFFSLYA 468
Query: 700 -------DQNNGMYRCEKCNKEF-NTF----------------TYRLILPVMIGDWTNSV 735
DQN C+ CNK+ TF + R I+ + + D T
Sbjct: 469 TISHIKPDQNMWYRACKTCNKKVTETFGSGYWCEGCQKNDSECSLRYIMVIKVSDPTGEA 528
Query: 736 WVTLFQNEAESILGVTAQEVG----ESTEDHPA--LKKALFTQYIFRLRAKLEHYN 785
WV++F AE I+G +A E+ E +D LK+A + ++FR+ YN
Sbjct: 529 WVSVFNEHAEKIIGCSADELDRIRKEEGDDSYVLKLKEATWVPHLFRVSVTQHEYN 584
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/340 (30%), Positives = 165/340 (48%), Gaps = 28/340 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN--MPSVKYCFVPLKTIAE-ISPDENIDV 62
ANK+F ++ NDYEMS + V E+ G +P V+Y V + + + E +D+
Sbjct: 256 ANKQFKTVQNDYEMSLNENAIV----EEAEGETCIPQVQYNLVKIDQLGSYVGGRELVDI 311
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK-----EAETFD-ASNK 116
+GV + SV K + +T KRDI + D S +V+++LW E D A +
Sbjct: 312 IGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVSISLWNDLTTTTGQELLDMADSS 371
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPV----- 170
PV+A+K+ +VS+FQG +LS S L++NPD+ E L+ W+ ++ +T P+
Sbjct: 372 PVVAIKSLKVSDFQG-VSLSTVGKSTLAINPDLHEAQNLKSWYDSEGKDTSLAPIGAEMG 430
Query: 171 SQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCN 230
+ R GG + + L D +G + I + N Y+AC + CN
Sbjct: 431 AARAGGFKSTYSDRVFLSHITSDPAMGQEKPVFFSLYATISHIKPDQNMWYRACKT--CN 488
Query: 231 KKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 290
KKV + Y CE C K + + R I+ + + D T WV++F AE I+G +A E+
Sbjct: 489 KKVTETFGSGYWCEGCQKNDSECSLRYIMVIKVSDPTGEAWVSVFNEHAEKIIGCSADEL 548
Query: 291 G----ESTEDHPA--LKKALFTQYIFRLRAKLEHYNGTKK 324
E +D LK+A + ++FR+ YN K+
Sbjct: 549 DRIRKEEGDDSYVLKLKEATWVPHLFRVSVTQHEYNNEKR 588
>gi|356564937|ref|XP_003550703.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Glycine max]
Length = 600
Score = 172 bits (435), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 141/524 (26%), Positives = 242/524 (46%), Gaps = 85/524 (16%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AM+++ + + G + ++++ Y V+ + + S LI+ + + P EI K
Sbjct: 56 AMISSDMCSQVLSGAIQNLGLIRVLDYTVNVIPNKS---DKYLIVTKCEPVSPALEIEIK 112
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNTNGSNGV---HNNVAIPRQASAPVVQTHPIVSLSPY 451
+ + + ++ T +N + H N A P A + P+VSL+PY
Sbjct: 113 -------SEESGSGILLKSKVEVVTKSANQILREHGNSA-PAARMAMTRRVRPLVSLNPY 164
Query: 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNRFHDMIEKD 510
Q WTIK VT+K +R + NARG G +F+++L DE G +I+ATMFN+ +F+D
Sbjct: 165 QGNWTIKVSVTSKGNMRNYKNARGDGCVFNVELTDEDGTQIQATMFNNAARKFYDKFILG 224
Query: 511 KVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIA- 569
+VYYIS TLK ANK+F ++ NDYEM+ ++ V E +P K+ FV + +
Sbjct: 225 RVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEV-AGEASFVPETKFNFVQIDQLGP 283
Query: 570 EISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA---- 625
++ E +DV+G+ + + ++ K++ ++ KRDIT+ D ++ +V ++LW + A
Sbjct: 284 HVNKSELVDVIGIVKNVSSTMTIRRKSDNESIPKRDITIADDTKKTVVVSLWNELATTTG 343
Query: 626 -ETFDASNK-PVIAVKAARVSEFQG---------------------NLLLMREIQDQQLG 662
E D +K PV+A+K+ +V +FQG NL + + +
Sbjct: 344 QELLDIVDKSPVVAIKSLKVGDFQGVSLSTIGKSVVLVNPVIPEAKNLRSWYDFEGKDAA 403
Query: 663 M---GDKADYCSVRGIIQVF--RGSNTTYKACPSQDCNK----------KVIDQNNGM-Y 706
M G + S GI V+ R + + PS K I + M Y
Sbjct: 404 MDSVGSGSSPTSNNGIRSVYTDRVLLSDITSNPSLGDGKPAFFSLRGHISFIKPDQAMWY 463
Query: 707 R-CEKCNKEF-----------------NTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL 748
R C+ CNK+ + R I+ + D + +++ F EAE I+
Sbjct: 464 RACKTCNKKVTESVGSGYLCDGCQKSDEQCSLRYIMVAKVSDASAETYISAFNQEAEKII 523
Query: 749 GVTAQEV-------GESTEDHPALKKALFTQYIFRLRAKLEHYN 785
G +A ++ GE LK+A + Q++FR+ YN
Sbjct: 524 GCSADDLDNLKSQEGEVNPYQMTLKEATWAQHLFRVSVTPNEYN 567
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 170/346 (49%), Gaps = 38/346 (10%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIA-EISPDENIDVLG 64
ANK+F ++ NDYEM+ ++ V E +P K+ FV + + ++ E +DV+G
Sbjct: 237 ANKQFKTVQNDYEMTLNENSEVEEV-AGEASFVPETKFNFVQIDQLGPHVNKSELVDVIG 295
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ETFDASNK-PV 118
+ + + ++ K++ ++ KRDIT+ D ++ +V ++LW + A E D +K PV
Sbjct: 296 IVKNVSSTMTIRRKSDNESIPKRDITIADDTKKTVVVSLWNELATTTGQELLDIVDKSPV 355
Query: 119 IAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMG 178
+A+K+ +V +FQG +LS SV+ +NP IPE L+ W+ FE +G
Sbjct: 356 VAIKSLKVGDFQG-VSLSTIGKSVVLVNPVIPEAKNLRSWYD------FEGKDAAMDSVG 408
Query: 179 GGAA------------GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACP 225
G++ +LL + LG G A + S+RG I + Y+AC
Sbjct: 409 SGSSPTSNNGIRSVYTDRVLLSDITSNPSLGDGKPA-FFSLRGHISFIKPDQAMWYRACK 467
Query: 226 SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGV 285
+ CNKKV + Y C+ C K + R I+ + D + +++ F EAE I+G
Sbjct: 468 T--CNKKVTESVGSGYLCDGCQKSDEQCSLRYIMVAKVSDASAETYISAFNQEAEKIIGC 525
Query: 286 TAQEV-------GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKK 324
+A ++ GE LK+A + Q++FR+ YNG K+
Sbjct: 526 SADDLDNLKSQEGEVNPYQMTLKEATWAQHLFRVSVTPNEYNGEKR 571
>gi|223942895|gb|ACN25531.1| unknown [Zea mays]
gi|414865518|tpg|DAA44075.1| TPA: replication protein A DNA-binding subunit [Zea mays]
Length = 617
Score = 172 bits (435), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 125/416 (30%), Positives = 198/416 (47%), Gaps = 75/416 (18%)
Query: 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDE 499
+ HP+++L+PYQ W IK RVT+K +R + NARG G +F+++L DE G +I+ATMFND
Sbjct: 173 RVHPLITLNPYQGNWVIKVRVTSKGNLRTYRNARGEGCVFNVELTDEDGTQIQATMFNDA 232
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN--MPS 557
+F+ + E KVYY+S +L+ ANK+F ++ NDYEMS + V E+ G +P
Sbjct: 233 AKKFYPIFELGKVYYVSKGSLRIANKQFKTVQNDYEMSLNENAIV----EEAEGETCIPQ 288
Query: 558 VKYCFVPLKTIAE-ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
V+Y V + + + E +D++GV + SV K + +T KRDI + D S +V
Sbjct: 289 VQYNLVKIDQLGSYVGGRELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTV 348
Query: 617 TMTLWGKEAETFD------ASNKPVIAVKAARVSEFQG---------NLLLMREIQDQQ- 660
+++LW A T A + PV+A+K+ +VS+FQG L + ++ + Q
Sbjct: 349 SISLWNDLATTTGQELLNMADSSPVVAIKSLKVSDFQGVSLSTVGKSTLAINPDLHEAQN 408
Query: 661 -----LGMGDKADYCSVRGIIQVFR--GSNTTYK---------ACPSQDCNKKVI----- 699
G + + R G +TY + P+ K V
Sbjct: 409 LKSWYDSEGKDTSLAPIGAEMGAARAGGFKSTYSDRVFLSHITSDPAMGQEKPVFFSLYA 468
Query: 700 -------DQNNGMYRCEKCNKEF-NTF----------------TYRLILPVMIGDWTNSV 735
DQN C+ CNK+ TF + R I+ + + D T
Sbjct: 469 TISHIKPDQNMWYRACKTCNKKVTETFGSGYWCEGCQKNDSECSLRYIMVIKVSDPTGEA 528
Query: 736 WVTLFQNEAESILGVTAQEVG----ESTEDHPA--LKKALFTQYIFRLRAKLEHYN 785
W ++F AE I+G +A E+ E +D LK+A + ++FR+ YN
Sbjct: 529 WFSVFNEHAEKIIGCSADELDRIRKEEGDDSYVLKLKEATWVPHLFRVSVTQHEYN 584
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 101/340 (29%), Positives = 164/340 (48%), Gaps = 28/340 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN--MPSVKYCFVPLKTIAE-ISPDENIDV 62
ANK+F ++ NDYEMS + V E+ G +P V+Y V + + + E +D+
Sbjct: 256 ANKQFKTVQNDYEMSLNENAIV----EEAEGETCIPQVQYNLVKIDQLGSYVGGRELVDI 311
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD------ASNK 116
+GV + SV K + +T KRDI + D S +V+++LW A T A +
Sbjct: 312 VGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVSISLWNDLATTTGQELLNMADSS 371
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPV----- 170
PV+A+K+ +VS+FQG +LS S L++NPD+ E L+ W+ ++ +T P+
Sbjct: 372 PVVAIKSLKVSDFQG-VSLSTVGKSTLAINPDLHEAQNLKSWYDSEGKDTSLAPIGAEMG 430
Query: 171 SQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCN 230
+ R GG + + L D +G + I + N Y+AC + CN
Sbjct: 431 AARAGGFKSTYSDRVFLSHITSDPAMGQEKPVFFSLYATISHIKPDQNMWYRACKT--CN 488
Query: 231 KKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 290
KKV + Y CE C K + + R I+ + + D T W ++F AE I+G +A E+
Sbjct: 489 KKVTETFGSGYWCEGCQKNDSECSLRYIMVIKVSDPTGEAWFSVFNEHAEKIIGCSADEL 548
Query: 291 G----ESTEDHPA--LKKALFTQYIFRLRAKLEHYNGTKK 324
E +D LK+A + ++FR+ YN K+
Sbjct: 549 DRIRKEEGDDSYVLKLKEATWVPHLFRVSVTQHEYNNEKR 588
>gi|2258469|gb|AAB71836.1| replication protein A1 [Oryza sativa Indica Group]
gi|125542895|gb|EAY89034.1| hypothetical protein OsI_10518 [Oryza sativa Indica Group]
Length = 630
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 127/427 (29%), Positives = 201/427 (47%), Gaps = 77/427 (18%)
Query: 430 AIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG 489
A P A + HP++SL+PYQ W IK RVT+K +R + NARG G +F+++L D G
Sbjct: 174 AAPAARLAMTRRVHPLISLNPYQGNWIIKVRVTSKGNLRTYKNARGEGCVFNVELTDVDG 233
Query: 490 -EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
+I+ATMFN+ +F+ M E KVYYIS +L+ ANK+F +++NDYEM+ + V
Sbjct: 234 TQIQATMFNEAAKKFYPMFELGKVYYISKGSLRVANKQFKTVHNDYEMTLNENAVV---- 289
Query: 549 EDEVGN--MPSVKYCFVPLKTIAE-ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRD 605
E+ G +P ++Y FV + + + E +DV+GV + SV K + +T KRD
Sbjct: 290 EEAEGETFIPQIQYNFVKIDQLGPYVGGRELVDVIGVVQSVSPTLSVRRKIDNETIPKRD 349
Query: 606 ITLVDQSQASVTMTLWGKEA-----ETFD-ASNKPVIAVKAARVSEFQGNLL-------- 651
I + D S +VT++LW A E D + P+IA+K+ +VS+FQG L
Sbjct: 350 IVVADDSSKTVTISLWNDLATTTGQELLDMVDSAPIIAIKSLKVSDFQGLSLSTVGRSTI 409
Query: 652 ----------LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYK---------ACPSQ 692
+R D + A S G +V G+ + Y + P+
Sbjct: 410 VVNPDLPEAEQLRAWYDSEGKGTSMASIGSDMGASRV-GGARSMYSDRVFLSHITSDPNL 468
Query: 693 DCNKKVI------------DQNNGMYRCEKCNKEFNTF-----------------TYRLI 723
+K V DQ C+ CNK+ + R I
Sbjct: 469 GQDKPVFFSLNAYISLIKPDQTMWYRACKTCNKKVTEAMGSGYWCEGCQKNDAECSLRYI 528
Query: 724 LPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP------ALKKALFTQYIFRL 777
+ + + D T W++LF ++AE I+G +A E+ ++ LK+A + ++FR+
Sbjct: 529 MVIKVSDPTGEAWLSLFNDQAERIVGCSADELDRIRKEEGDDSYLLKLKEATWVPHLFRV 588
Query: 778 RAKLEHY 784
Y
Sbjct: 589 SVTQNEY 595
Score = 149 bits (377), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 170/341 (49%), Gaps = 30/341 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN--MPSVKYCFVPLKTIAE-ISPDENIDV 62
ANK+F +++NDYEM+ + V E+ G +P ++Y FV + + + E +DV
Sbjct: 268 ANKQFKTVHNDYEMTLNENAVV----EEAEGETFIPQIQYNFVKIDQLGPYVGGRELVDV 323
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ETFD-ASNK 116
+GV + SV K + +T KRDI + D S +VT++LW A E D +
Sbjct: 324 IGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTVTISLWNDLATTTGQELLDMVDSA 383
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPV----- 170
P+IA+K+ +VS+FQG +LS S + +NPD+PE +L+ W+ ++ T +
Sbjct: 384 PIIAIKSLKVSDFQG-LSLSTVGRSTIVVNPDLPEAEQLRAWYDSEGKGTSMASIGSDMG 442
Query: 171 SQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDC 229
+ R GG + + L D LG DK + S+ I + + T Y+AC + C
Sbjct: 443 ASRVGGARSMYSDRVFLSHITSDPNLGQ-DKPVFFSLNAYISLIKPDQTMWYRACKT--C 499
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
NKKV + Y CE C K + R I+ + + D T W++LF ++AE I+G +A E
Sbjct: 500 NKKVTEAMGSGYWCEGCQKNDAECSLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADE 559
Query: 290 VGESTEDHP------ALKKALFTQYIFRLRAKLEHYNGTKK 324
+ ++ LK+A + ++FR+ Y K+
Sbjct: 560 LDRIRKEEGDDSYLLKLKEATWVPHLFRVSVTQNEYMNEKR 600
>gi|115451537|ref|NP_001049369.1| Os03g0214100 [Oryza sativa Japonica Group]
gi|108706832|gb|ABF94627.1| replication factor-a protein 1 containing protein, expressed [Oryza
sativa Japonica Group]
gi|113547840|dbj|BAF11283.1| Os03g0214100 [Oryza sativa Japonica Group]
gi|125585388|gb|EAZ26052.1| hypothetical protein OsJ_09906 [Oryza sativa Japonica Group]
Length = 630
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 127/427 (29%), Positives = 201/427 (47%), Gaps = 77/427 (18%)
Query: 430 AIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG 489
A P A + HP++SL+PYQ W IK RVT+K +R + NARG G +F+++L D G
Sbjct: 174 AAPAARLAMTRRVHPLISLNPYQGNWIIKVRVTSKGNLRTYKNARGEGCVFNVELTDVDG 233
Query: 490 -EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
+I+ATMFN+ +F+ M E KVYYIS +L+ ANK+F +++NDYEM+ + V
Sbjct: 234 TQIQATMFNEAAKKFYPMFELGKVYYISKGSLRVANKQFKTVHNDYEMTLNENAVV---- 289
Query: 549 EDEVGN--MPSVKYCFVPLKTIAE-ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRD 605
E+ G +P ++Y FV + + + E +DV+GV + SV K + +T KRD
Sbjct: 290 EEAEGETFIPQIQYNFVKIDQLGPYVGGRELVDVIGVVQSVSPTLSVRRKIDNETIPKRD 349
Query: 606 ITLVDQSQASVTMTLWGKEA-----ETFD-ASNKPVIAVKAARVSEFQGNLL-------- 651
I + D S +VT++LW A E D + P+IA+K+ +VS+FQG L
Sbjct: 350 IVVADDSSKTVTISLWNDLATTTGQELLDMVDSAPIIAIKSLKVSDFQGLSLSTVGRSTI 409
Query: 652 ----------LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYK---------ACPSQ 692
+R D + A S G +V G+ + Y + P+
Sbjct: 410 VVNPDLPEAEQLRAWYDSEGKGTSMASIGSDMGASRV-GGARSMYSDRVFLSHITSDPNL 468
Query: 693 DCNKKVI------------DQNNGMYRCEKCNKEFNTF-----------------TYRLI 723
+K V DQ C+ CNK+ + R I
Sbjct: 469 GQDKPVFFSLNAYISLIKPDQTMWYRACKTCNKKVTEAIGSGYWCEGCQKNDAECSLRYI 528
Query: 724 LPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP------ALKKALFTQYIFRL 777
+ + + D T W++LF ++AE I+G +A E+ ++ LK+A + ++FR+
Sbjct: 529 MVIKVSDPTGEAWLSLFNDQAERIVGCSADELDRIRKEEGDDSYLLKLKEATWVPHLFRV 588
Query: 778 RAKLEHY 784
Y
Sbjct: 589 SVTQNEY 595
Score = 149 bits (376), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 170/341 (49%), Gaps = 30/341 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN--MPSVKYCFVPLKTIAE-ISPDENIDV 62
ANK+F +++NDYEM+ + V E+ G +P ++Y FV + + + E +DV
Sbjct: 268 ANKQFKTVHNDYEMTLNENAVV----EEAEGETFIPQIQYNFVKIDQLGPYVGGRELVDV 323
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ETFD-ASNK 116
+GV + SV K + +T KRDI + D S +VT++LW A E D +
Sbjct: 324 IGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTVTISLWNDLATTTGQELLDMVDSA 383
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPV----- 170
P+IA+K+ +VS+FQG +LS S + +NPD+PE +L+ W+ ++ T +
Sbjct: 384 PIIAIKSLKVSDFQG-LSLSTVGRSTIVVNPDLPEAEQLRAWYDSEGKGTSMASIGSDMG 442
Query: 171 SQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDC 229
+ R GG + + L D LG DK + S+ I + + T Y+AC + C
Sbjct: 443 ASRVGGARSMYSDRVFLSHITSDPNLGQ-DKPVFFSLNAYISLIKPDQTMWYRACKT--C 499
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
NKKV + Y CE C K + R I+ + + D T W++LF ++AE I+G +A E
Sbjct: 500 NKKVTEAIGSGYWCEGCQKNDAECSLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADE 559
Query: 290 VGESTEDHP------ALKKALFTQYIFRLRAKLEHYNGTKK 324
+ ++ LK+A + ++FR+ Y K+
Sbjct: 560 LDRIRKEEGDDSYLLKLKEATWVPHLFRVSVTQNEYMNEKR 600
>gi|297797049|ref|XP_002866409.1| hypothetical protein ARALYDRAFT_496254 [Arabidopsis lyrata subsp.
lyrata]
gi|297312244|gb|EFH42668.1| hypothetical protein ARALYDRAFT_496254 [Arabidopsis lyrata subsp.
lyrata]
Length = 631
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 144/227 (63%), Gaps = 9/227 (3%)
Query: 430 AIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG 489
A P A + HP+VSL+PYQ WTIK RVTNK +R + NARG G +F+++L DE G
Sbjct: 171 AAPAARMAMTRRVHPLVSLNPYQGNWTIKVRVTNKGVMRNYKNARGEGCVFNVELTDEEG 230
Query: 490 -EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
+I+ATMFND +F+D + KVYYIS +LK ANK+F ++ NDYEM+ ++ V +
Sbjct: 231 TQIQATMFNDAARKFYDRFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEAS 290
Query: 549 EDEVGNMPSVKYCFVPLKTIA-EISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDIT 607
+E+ +P K+ FVP++ + ++ E ID++GV + S+ +T+ + KRDIT
Sbjct: 291 SEEMF-IPETKFNFVPIEELGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDIT 349
Query: 608 LVDQSQASVTMTLW-----GKEAETFDASNK-PVIAVKAARVSEFQG 648
L D+S+ +V ++LW G E D ++K PV+A+K+ +V +FQG
Sbjct: 350 LADESKKTVVVSLWNDLATGIGQELLDMADKSPVVAIKSLKVGDFQG 396
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/342 (31%), Positives = 181/342 (52%), Gaps = 30/342 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIA-EISPDENIDVLG 64
ANK+F ++ NDYEM+ ++ V + +E+ +P K+ FVP++ + ++ E ID++G
Sbjct: 265 ANKQFKTVQNDYEMTLNENSEVEEASSEEMF-IPETKFNFVPIEELGLYVNQKELIDLIG 323
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW-----GKEAETFDASNK-PV 118
V + S+ +T+ + KRDITL D+S+ +V ++LW G E D ++K PV
Sbjct: 324 VVQSVSPTMSIRRRTDNEMIPKRDITLADESKKTVVVSLWNDLATGIGQELLDMADKSPV 383
Query: 119 IAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ--------TNTRFEPV 170
+A+K+ +V +FQG ++S S+V+ +NP+ PE KL+ WF ++ + P
Sbjct: 384 VAIKSLKVGDFQGVSLSTISRSNVV-INPESPEAKKLKSWFDSEGKEISMSSIGSGMSPS 442
Query: 171 SQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDC 229
S+ G +LL + LG +K + S R I + T Y+AC + C
Sbjct: 443 SK--NGSRSMYTDRVLLSHITSNPSLG-EEKPVFFSTRAYISFIKPDQTMWYQACKT--C 497
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
NKKV + + Y CE C K++ + R I+ V + D + W++ F +EAE ILG +A +
Sbjct: 498 NKKVTEALDSGYWCEGCQKKYEECSLRYIMAVKVTDSSGETWISSFNDEAEKILGCSADD 557
Query: 290 V-------GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKK 324
+ GE E LK+A ++ ++FR+ YNG K+
Sbjct: 558 LNKLRSEGGEVNEYQTKLKEATWSSHVFRVSVSQNEYNGEKR 599
>gi|320168096|gb|EFW44995.1| replication protein A [Capsaspora owczarzaki ATCC 30864]
Length = 688
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 119/388 (30%), Positives = 202/388 (52%), Gaps = 77/388 (19%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DGV+ A+L T L ++ ++ FT+V++K+++ S V R+++I+++++I
Sbjct: 52 ISDGVHHYMQALLGTSLAEVAKTDAITRFTVVRVKKFVCSPV-----VERTIVILMDVDI 106
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQ--------TPA-ATN----------------- 418
+ GT G KIG+P+P D + +PA ATN
Sbjct: 107 L--GTPAG-KIGDPKPYEVAPDAGAVAGGAAAGAPTSPAGATNGAAAPVGAAPAAPKVSP 163
Query: 419 ----TNGSNGVHNNVAIPRQASAPVVQ-----------------------THPIVSL-SP 450
T+ + G + R AS P Q T PI + +
Sbjct: 164 YRQYTDAATGAVTSAFGARVASPPRAQQSFPAFDPNKTLEQIVAEGQTPETLPIAYIYNT 223
Query: 451 YQNKWTIKARVTNKTPIREW-------NNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
+K+ I+ARVT K P+RE+ NN G G++ SIDL D+S EIRAT FN++ +
Sbjct: 224 MPSKFIIRARVTLKHPVREFARKNPGPNNQSG-GRVCSIDLKDDSSEIRATAFNEQIDTI 282
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+ +E K YY S ++KPAN+ ++++ +DYE++F T +PC+++ N+P V Y FV
Sbjct: 283 INSLEVGKAYYFSKMSVKPANRMYNTLPSDYELTFEKGTQWVPCHDE--ANLPQVVYNFV 340
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
+ + ++ +D++G+C A ++ ++T K QK+ KR++TLVDQSQ +T+TLW
Sbjct: 341 RFDGLETLG-EQTVDLIGICKSARDVQTITTK-QQKSVPKRELTLVDQSQREITVTLWNT 398
Query: 624 EAETFD---ASNKPVIAVKAARVSEFQG 648
+A FD A + V+A + ++++F G
Sbjct: 399 QATNFDEQVAVDNRVLAFRKVKLTDFSG 426
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 102/363 (28%), Positives = 175/363 (48%), Gaps = 51/363 (14%)
Query: 1 MLAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI 60
M PAN+ ++++ +DYE++F T +PC+++ N+P V Y FV + + ++ +
Sbjct: 297 MSVKPANRMYNTLPSDYELTFEKGTQWVPCHDE--ANLPQVVYNFVRFDGLETLG-EQTV 353
Query: 61 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD---ASNKP 117
D++G+C A ++ ++T K QK+ KR++TLVDQSQ +T+TLW +A FD A +
Sbjct: 354 DLIGICKSARDVQTITTK-QQKSVPKRELTLVDQSQREITVTLWNTQATNFDEQVAVDNR 412
Query: 118 VIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGM 177
V+A + ++++F G K+ S SS + + PD+PE +L+ WF ++ R + Q TGG
Sbjct: 413 VLAFRKVKLTDFSGVKSASCISSSAMEVEPDMPETQELRAWFDSE--GRNQSFQQVTGGA 470
Query: 178 GGGAAGN--LLLMREIQDQQLGMGDKADYCSVRGIIQVFR-------GSN-----TTYKA 223
G + GN L ++I DKA+Y ++G + + GSN Y A
Sbjct: 471 GAYSGGNRDLATFQQINSNHSLGADKAEYARLQGTVTFLKTKFDDKSGSNDGSVGMYYYA 530
Query: 224 C-----PSQDCNKKVIDQNNGMYRCEKCNKEF---------NTFTYRLI---LPVMIGDW 266
C P + + + C K+ + R+ L + D
Sbjct: 531 CGNIKQPIDNGQAAAPNSRQQAQQPSVCGKKLAIGEQCPTCGDVSQRISGCNLTFVADDS 590
Query: 267 TNSVWVTLFQNEAESILGVTAQEV-----------GESTEDHPALKKALFTQYIFRLRAK 315
T S W+T F++ A++ILG + +++ GE + +AL Y LR K
Sbjct: 591 TGSQWITAFRDTAQTILGASNKDLTLEHLHELALNGEQEQLDSIYAQALHHPYEMTLRIK 650
Query: 316 LEH 318
E
Sbjct: 651 QEQ 653
>gi|168053891|ref|XP_001779367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669165|gb|EDQ55757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 451
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 137/218 (62%), Gaps = 10/218 (4%)
Query: 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDE 499
+ +PI+SL+PYQ WTIK RVT+K+P+R + NARG G +F+++L DE G +I+ATMF +
Sbjct: 6 RVYPILSLNPYQGNWTIKVRVTSKSPLRTFKNARGDGNVFNVELTDEDGTQIQATMFKEA 65
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN-EDEVGNMPSV 558
++F+D+++ DKVY+IS +L+ ANK+++++ NDYEM+ ++ ++ + E +PS
Sbjct: 66 ADKFYDVLQLDKVYFISKGSLRMANKQYATVKNDYEMTLNSNSEIVEADIESSTFKLPSA 125
Query: 559 KYCFVPLKTIA-EISPDENI-DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
Y F + + IS + DVLGV L++V K+N KRDI L+DQS+ +V
Sbjct: 126 TYNFTKISDLGRHISSKRFVADVLGVVQSVGPLTTVNRKSNNDEIPKRDIVLLDQSRQTV 185
Query: 617 TMTLWGKEAETFDAS------NKPVIAVKAARVSEFQG 648
+TLW A AS P++ K R+S+FQG
Sbjct: 186 VLTLWNNMAVKEGASLADLIAESPILMAKGLRLSDFQG 223
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 176/342 (51%), Gaps = 29/342 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCN-EDEVGNMPSVKYCFVPLKTIA-EISPDENI-DV 62
ANK+++++ NDYEM+ ++ ++ + E +PS Y F + + IS + DV
Sbjct: 89 ANKQYATVKNDYEMTLNSNSEIVEADIESSTFKLPSATYNFTKISDLGRHISSKRFVADV 148
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS------NK 116
LGV L++V K+N KRDI L+DQS+ +V +TLW A AS
Sbjct: 149 LGVVQSVGPLTTVNRKSNNDEIPKRDIVLLDQSRQTVVLTLWNNMAVKEGASLADLIAES 208
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGG 176
P++ K R+S+FQG +LS +M++++ +NP IP+ ++L+ W+ + + R ++
Sbjct: 209 PILMAKGLRLSDFQG-VSLSSTMNTMVLINPVIPDANELRTWY--EEDGRTASLTPAGAS 265
Query: 177 MGGGAAGNL------LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDC 229
+ GG N ++ +I +G G K Y +VR I + Y AC Q C
Sbjct: 266 LPGGTNQNRSSFTDRAVLSDIIQPNVGEG-KPMYFNVRAYISFIKPDQAMWYLAC--QTC 322
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ- 288
N+KV++Q++ Y CE C ++ + R I+ + D + WV+ F +AES+LGV+A
Sbjct: 323 NRKVVEQSSSSYWCEGCQNHYDKCSRRYIMQAKLSDSSGEAWVSAFNEQAESLLGVSADN 382
Query: 289 ------EVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKK 324
+ G+ + A++KA++ ++R+ A Y K+
Sbjct: 383 LSEMRNQAGDDNQYQNAVRKAMWQPCVYRISAAQTEYMSEKR 424
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 11/141 (7%)
Query: 652 LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDCNKKVIDQNNGMYRCEK 710
++ +I +G G K Y +VR I + Y AC Q CN+KV++Q++ Y CE
Sbjct: 282 VLSDIIQPNVGEG-KPMYFNVRAYISFIKPDQAMWYLAC--QTCNRKVVEQSSSSYWCEG 338
Query: 711 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ-------EVGESTEDHP 763
C ++ + R I+ + D + WV+ F +AES+LGV+A + G+ +
Sbjct: 339 CQNHYDKCSRRYIMQAKLSDSSGEAWVSAFNEQAESLLGVSADNLSEMRNQAGDDNQYQN 398
Query: 764 ALKKALFTQYIFRLRAKLEHY 784
A++KA++ ++R+ A Y
Sbjct: 399 AVRKAMWQPCVYRISAAQTEY 419
>gi|429966174|gb|ELA48171.1| replication factor-a protein 1 (rpa1) [Vavraia culicis
'floridensis']
Length = 612
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 186/380 (48%), Gaps = 48/380 (12%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI +L+P+Q KW +K V K+ +RE+ + GK FS +LLD++G I+ FND + F
Sbjct: 213 PIAALNPFQTKWIVKGTVQKKSELREFK--KKDGKFFSFELLDKTGNIKCVAFNDGADLF 270
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
H ++ + V IS +K NKKF++ ++DYE+ ++ V NE+ G S C +
Sbjct: 271 HGIVAEGSVVEISKAVVKMCNKKFANTSSDYEIHLEKNSVVSLVNEE--GLAMSFDLCKI 328
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
+ ++ N DV+GV +A +S V K +Q+ KRD+ LVDQ+ +V TLWG
Sbjct: 329 S-DLVGRVNK-ANCDVIGVVHEAFPVSVVLAKASQREIKKRDLILVDQT-GTVRATLWGD 385
Query: 624 EAETFDASNKPVIAVKAARVSEFQGNLLLM------------------------------ 653
++E + PV+ +K RV EF ++L
Sbjct: 386 KSE-IELDEHPVLLLKDVRVGEFNNAVVLSTAFGSAVKVDPEMDEAYSLRGWYDEHKQSV 444
Query: 654 ---REIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 710
R +++ + + Y + + R N Y AC + +CNKKV + G Y CE+
Sbjct: 445 VVERPQRNEYTFIEEIQSYGTCAATVLFIREDNLFYNAC-ANNCNKKVSLTDEGYY-CER 502
Query: 711 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----L 765
CN+ T + R + + + D+T VW+ +F + G+TA E+ + E++ L
Sbjct: 503 CNQTKETCSIRYLTTLHVADFTQQVWLNVFDDFCTEFFGMTAYELKKMGEENATQLQNYL 562
Query: 766 KKALFTQYIFRLRAKLEHYN 785
K L+ +Y+ R++ E YN
Sbjct: 563 KTLLYKEYVIRMKRSEEVYN 582
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 157/324 (48%), Gaps = 32/324 (9%)
Query: 7 NKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVC 66
NKKF++ ++DYE+ ++ V NE+ G S C + + ++ N DV+GV
Sbjct: 291 NKKFANTSSDYEIHLEKNSVVSLVNEE--GLAMSFDLCKIS-DLVGRVNK-ANCDVIGVV 346
Query: 67 IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARV 126
+A +S V K +Q+ KRD+ LVDQ+ +V TLWG ++E + PV+ +K RV
Sbjct: 347 HEAFPVSVVLAKASQREIKKRDLILVDQT-GTVRATLWGDKSE-IELDEHPVLLLKDVRV 404
Query: 127 SEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLL 186
EF LS + S + ++P++ E + L+GW+ + QR
Sbjct: 405 GEFNNAVVLSTAFGSAVKVDPEMDEAYSLRGWYDEHKQSVVVERPQRN---------EYT 455
Query: 187 LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKC 246
+ EIQ Y + + R N Y AC + +CNKKV + G Y CE+C
Sbjct: 456 FIEEIQS----------YGTCAATVLFIREDNLFYNAC-ANNCNKKVSLTDEGYY-CERC 503
Query: 247 NKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----LK 301
N+ T + R + + + D+T VW+ +F + G+TA E+ + E++ LK
Sbjct: 504 NQTKETCSIRYLTTLHVADFTQQVWLNVFDDFCTEFFGMTAYELKKMGEENATQLQNYLK 563
Query: 302 KALFTQYIFRLRAKLEHYNGTKKI 325
L+ +Y+ R++ E YNG ++
Sbjct: 564 TLLYKEYVIRMKRSEEVYNGEMRV 587
>gi|242041767|ref|XP_002468278.1| hypothetical protein SORBIDRAFT_01g042890 [Sorghum bicolor]
gi|241922132|gb|EER95276.1| hypothetical protein SORBIDRAFT_01g042890 [Sorghum bicolor]
Length = 623
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 144/553 (26%), Positives = 237/553 (42%), Gaps = 126/553 (22%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AM T + G L +++I Y + V+ N VLI+++ ++
Sbjct: 59 AMFPTSFASEVRSGNLKNLGLIRILDYTCNAVN---GNNGKVLIVIKCELV--------- 106
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVV-------------- 440
Q L+ + + ++ P GV + QA+AP V
Sbjct: 107 ---CQALDAEINGEAKKEEPPIVLKPKDEGV----VVAEQANAPPVAIKPKQELKSASQI 159
Query: 441 ------------------QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSI 482
+ HP+++L+PYQ W IK RVT+K +R + NARG G +F++
Sbjct: 160 VNEQRGNAAPAARLSMTRRVHPLITLNPYQGNWVIKVRVTSKGNLRTYRNARGEGCVFNV 219
Query: 483 DLLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHS 541
+L DE G +I+ATMFN+ +F+ + E KVYY+S +L+ ANK+F ++ NDYEMS +
Sbjct: 220 ELTDEDGTQIQATMFNEAAKKFYPIFELGKVYYVSKGSLRIANKQFKTVQNDYEMSLNEN 279
Query: 542 TTVIPCNEDEVGN--MPSVKYCFVPLKTIAE-ISPDENIDVLGVCIDAAELSSVTGKTNQ 598
V E+ G +P V+Y FV + + + E +D++GV + SV K +
Sbjct: 280 AIV----EEAEGETFIPQVQYNFVKIDHLGTYVGGRELVDIIGVVQSVSPTLSVRRKIDN 335
Query: 599 KTYMKRDITLVDQSQASVTMTLWGKEA-----ETFD-ASNKPVIAVKAARVSEFQGNLLL 652
+T KRDI + D S +V+++LW A E D + PV+A+K+ +VS+FQG L
Sbjct: 336 ETIPKRDIVVADDSGKTVSISLWNDLATTTGQELLDMVDSSPVVAIKSLKVSDFQGVSLS 395
Query: 653 M-----------------------REIQDQQLG-MGDKADYCSVRGIIQVF--RGSNTTY 686
E +D L +G + G+ ++ R +
Sbjct: 396 TIGRSTLAINPDLPEAQNVKSWYDSEGKDTSLAPIGAEMGAARAGGLKSMYSDRVFLSHI 455
Query: 687 KACPSQDCNKKVI------------DQNNGMYRCEKCNKEF-----------------NT 717
+ P+ K V DQN C+ CNK+ +
Sbjct: 456 TSDPAMGQEKPVFFSLNAIISHIKPDQNMWYRACKTCNKKVTEAFGSGYWCEGCQKNDSE 515
Query: 718 FTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP------ALKKALFT 771
+ R I+ + I D T WV++F AE I+G +A E+ ++ LK+A +
Sbjct: 516 CSLRYIMVLKISDPTGEAWVSVFNEHAEKIIGCSADELDRIRKEEGDDSYILKLKEATWV 575
Query: 772 QYIFRLRAKLEHY 784
++FR+ Y
Sbjct: 576 PHLFRVSVTQHEY 588
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/341 (30%), Positives = 171/341 (50%), Gaps = 30/341 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN--MPSVKYCFVPLKTIAE-ISPDENIDV 62
ANK+F ++ NDYEMS + V E+ G +P V+Y FV + + + E +D+
Sbjct: 261 ANKQFKTVQNDYEMSLNENAIV----EEAEGETFIPQVQYNFVKIDHLGTYVGGRELVDI 316
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ETFD-ASNK 116
+GV + SV K + +T KRDI + D S +V+++LW A E D +
Sbjct: 317 IGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVSISLWNDLATTTGQELLDMVDSS 376
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPV----- 170
PV+A+K+ +VS+FQG +LS S L++NPD+PE ++ W+ ++ +T P+
Sbjct: 377 PVVAIKSLKVSDFQG-VSLSTIGRSTLAINPDLPEAQNVKSWYDSEGKDTSLAPIGAEMG 435
Query: 171 SQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFR-GSNTTYKACPSQDC 229
+ R GG+ + + L D +G +K + S+ II + N Y+AC + C
Sbjct: 436 AARAGGLKSMYSDRVFLSHITSDPAMGQ-EKPVFFSLNAIISHIKPDQNMWYRAC--KTC 492
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
NKKV + Y CE C K + + R I+ + I D T WV++F AE I+G +A E
Sbjct: 493 NKKVTEAFGSGYWCEGCQKNDSECSLRYIMVLKISDPTGEAWVSVFNEHAEKIIGCSADE 552
Query: 290 VGESTEDHP------ALKKALFTQYIFRLRAKLEHYNGTKK 324
+ ++ LK+A + ++FR+ Y K+
Sbjct: 553 LDRIRKEEGDDSYILKLKEATWVPHLFRVSVTQHEYMNEKR 593
>gi|226531756|ref|NP_001141474.1| uncharacterized protein LOC100273584 [Zea mays]
gi|194704722|gb|ACF86445.1| unknown [Zea mays]
gi|195647462|gb|ACG43199.1| replication protein A 70 kDa DNA-binding subunit [Zea mays]
gi|413956552|gb|AFW89201.1| Replication protein A DNA-binding subunit [Zea mays]
Length = 623
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 146/545 (26%), Positives = 241/545 (44%), Gaps = 110/545 (20%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIIL-----------ELN 383
AML T + G L F +++I Y + V G+A VLI++ E+N
Sbjct: 59 AMLPTYFASEVHSGNLKNFGLIRILDYTCNSVK-GNADK--VLIVVKCETVCEALDAEIN 115
Query: 384 ----------IIKP---GTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVA 430
++KP G+ + + +P PL + T G+ ++
Sbjct: 116 GEAKKEDPPIVLKPKDEGSVVAEETNSP-PLVMKPKQEVKSASQIVTEQRGNAAPATRLS 174
Query: 431 IPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG- 489
+ R+ HP+++L+PYQ W IK RVT+K +R + NARG G +F+++L DE G
Sbjct: 175 MTRR-------VHPLITLNPYQGNWVIKVRVTSKGNLRTYRNARGEGCVFNVELTDEDGT 227
Query: 490 EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNE 549
+I+ATMFN+ +F+ + E KVYY+S +L+ ANK+F ++ NDYE+S + V E
Sbjct: 228 QIQATMFNEAAKKFYPIFELGKVYYVSKGSLRIANKQFKTVKNDYELSLNENAIV----E 283
Query: 550 DEVGN--MPSVKYCFVPLKTIAE-ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDI 606
+ G +P V+Y V + + + E +D++GV + SV K + +T KRDI
Sbjct: 284 EAEGETFLPPVQYNLVKIDQLGPYVGGRELVDIVGVVQSVSPTLSVRRKIDNETIPKRDI 343
Query: 607 TLVDQSQASVTMTLWGKEA-----ETFD-ASNKPVIAVKAARVSEFQG------------ 648
+ D S +VT++LW A E D + PV+A+K+ +VS+FQG
Sbjct: 344 VVADDSGKTVTISLWNDLATTTGQELLDMVDSSPVVAIKSLKVSDFQGVSLSTIGRSTLE 403
Query: 649 ---NLLLMREIQDQQLGMGDKADYCSVRGIIQVFR--GSNTTYK---------ACPSQDC 694
+L + ++ G + + R G + Y + P+
Sbjct: 404 INPDLPEAKNLKSWYDSEGKDTSLAPISAEVGATRAGGFKSMYSDRVFLSHITSDPAMGQ 463
Query: 695 NKKVI------------DQNNGMYRCEKCNKE-----------------FNTFTYRLILP 725
K V DQN C CNK+ ++ + R I+
Sbjct: 464 EKPVFFSLYAIISHIKPDQNMWYRACTTCNKKVTEAFGSGYWCEGCQKNYSECSLRYIMV 523
Query: 726 VMIGDWTNSVWVTLFQNEAESILGVTAQEVG----ESTEDHPA--LKKALFTQYIFRLRA 779
+ + D T WV++F AE I+G +A E+ E +D LK+A + ++FR+
Sbjct: 524 IKLSDPTGEAWVSVFNEHAEKIIGCSADELDRIRKEEGDDSYVLKLKEATWVPHLFRVSV 583
Query: 780 KLEHY 784
Y
Sbjct: 584 TQHEY 588
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/341 (31%), Positives = 170/341 (49%), Gaps = 30/341 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN--MPSVKYCFVPLKTIAE-ISPDENIDV 62
ANK+F ++ NDYE+S + V E+ G +P V+Y V + + + E +D+
Sbjct: 261 ANKQFKTVKNDYELSLNENAIV----EEAEGETFLPPVQYNLVKIDQLGPYVGGRELVDI 316
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ETFD-ASNK 116
+GV + SV K + +T KRDI + D S +VT++LW A E D +
Sbjct: 317 VGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQELLDMVDSS 376
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQ--- 172
PV+A+K+ +VS+FQG +LS S L +NPD+PE L+ W+ ++ +T P+S
Sbjct: 377 PVVAIKSLKVSDFQG-VSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTSLAPISAEVG 435
Query: 173 --RTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFR-GSNTTYKACPSQDC 229
R GG + + L D +G +K + S+ II + N Y+AC + C
Sbjct: 436 ATRAGGFKSMYSDRVFLSHITSDPAMGQ-EKPVFFSLYAIISHIKPDQNMWYRACTT--C 492
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
NKKV + Y CE C K ++ + R I+ + + D T WV++F AE I+G +A E
Sbjct: 493 NKKVTEAFGSGYWCEGCQKNYSECSLRYIMVIKLSDPTGEAWVSVFNEHAEKIIGCSADE 552
Query: 290 VG----ESTEDHPA--LKKALFTQYIFRLRAKLEHYNGTKK 324
+ E +D LK+A + ++FR+ Y K+
Sbjct: 553 LDRIRKEEGDDSYVLKLKEATWVPHLFRVSVTQHEYMNEKR 593
>gi|15239494|ref|NP_200908.1| Replication factor-A protein 1-like protein [Arabidopsis thaliana]
gi|10177323|dbj|BAB10649.1| replication protein A1 [Arabidopsis thaliana]
gi|28393124|gb|AAO41995.1| putative RNA helicase [Arabidopsis thaliana]
gi|332010026|gb|AED97409.1| Replication factor-A protein 1-like protein [Arabidopsis thaliana]
Length = 629
Score = 169 bits (427), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 141/227 (62%), Gaps = 9/227 (3%)
Query: 430 AIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG 489
A P A + HP+VSL+PYQ WTIK RVTNK +R + NARG G +F+++L DE G
Sbjct: 169 AAPAARMAMTRRVHPLVSLNPYQGNWTIKVRVTNKGVMRNYKNARGEGCVFNVELTDEEG 228
Query: 490 -EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
+I+ATMFND +F D + KVYYIS +LK ANK+F ++ NDYEM+ ++ V +
Sbjct: 229 TQIQATMFNDAARKFFDRFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEAS 288
Query: 549 EDEVGNMPSVKYCFVPLKTIA-EISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDIT 607
+E+ +P K+ FVP++ + ++ E ID++GV + S+ +T+ + KRDIT
Sbjct: 289 SEEMF-IPETKFNFVPIEELGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDIT 347
Query: 608 LVDQSQASVTMTLW-----GKEAETFD-ASNKPVIAVKAARVSEFQG 648
L D+S+ +V ++LW G E D A PVIA+K+ +V +FQG
Sbjct: 348 LADESRKTVVVSLWNDLATGIGQELLDMADQSPVIAIKSLKVGDFQG 394
Score = 155 bits (392), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 107/342 (31%), Positives = 177/342 (51%), Gaps = 30/342 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIA-EISPDENIDVLG 64
ANK+F ++ NDYEM+ ++ V + +E+ +P K+ FVP++ + ++ E ID++G
Sbjct: 263 ANKQFKTVQNDYEMTLNENSEVEEASSEEMF-IPETKFNFVPIEELGLYVNQKELIDLIG 321
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW-----GKEAETFD-ASNKPV 118
V + S+ +T+ + KRDITL D+S+ +V ++LW G E D A PV
Sbjct: 322 VVQSVSPTMSIRRRTDNEMIPKRDITLADESRKTVVVSLWNDLATGIGQELLDMADQSPV 381
Query: 119 IAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMG 178
IA+K+ +V +FQG ++S S+V+ +NP+ PE KL+ WF ++ E G
Sbjct: 382 IAIKSLKVGDFQGVSLSTISRSNVV-INPESPEAKKLKSWFDSEGK---EISMSSIGSGM 437
Query: 179 GGAAGN--------LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDC 229
+A N +L+ I +K + S R I + T Y+AC + C
Sbjct: 438 SPSAKNGSRSLYTDRVLLSHITSNPSLFEEKPVFFSTRAYISFIKPDQTMWYQACKT--C 495
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
NKKV + + Y CE C +++ + R I+ V + D + W++ F +EAE ILG +A E
Sbjct: 496 NKKVTEALDSGYWCEGCQRKYEECSLRYIMAVKVTDSSGETWISSFNDEAEKILGCSADE 555
Query: 290 V-------GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKK 324
+ GE E LK+A ++ ++FR+ YNG K+
Sbjct: 556 LNKLKSEEGEVNEYQTKLKEATWSSHVFRVSVTQNEYNGEKR 597
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 10/129 (7%)
Query: 665 DKADYCSVRGIIQVFRGSNTT-YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLI 723
+K + S R I + T Y+AC + CNKKV + + Y CE C +++ + R I
Sbjct: 467 EKPVFFSTRAYISFIKPDQTMWYQACKT--CNKKVTEALDSGYWCEGCQRKYEECSLRYI 524
Query: 724 LPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-------GESTEDHPALKKALFTQYIFR 776
+ V + D + W++ F +EAE ILG +A E+ GE E LK+A ++ ++FR
Sbjct: 525 MAVKVTDSSGETWISSFNDEAEKILGCSADELNKLKSEEGEVNEYQTKLKEATWSSHVFR 584
Query: 777 LRAKLEHYN 785
+ YN
Sbjct: 585 VSVTQNEYN 593
>gi|31580977|dbj|BAC77529.1| replication protein A 70b [Oryza sativa Japonica Group]
Length = 630
Score = 169 bits (427), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 125/426 (29%), Positives = 205/426 (48%), Gaps = 75/426 (17%)
Query: 430 AIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG 489
A P A + HP++SL+PYQ W IK RVT+K +R + NARG G +F+++L D G
Sbjct: 174 AAPAARLAMTRRVHPLISLNPYQGNWIIKVRVTSKGNLRTYKNARGEGCVFNVELTDVDG 233
Query: 490 -EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
+I+ATMFN+ +F+ M E KVYYIS +L+ A+K+F +++NDYEM+ + V
Sbjct: 234 TQIQATMFNEAAKKFYPMFELGKVYYISKGSLRVADKQFKTVHNDYEMTLNENAVV---- 289
Query: 549 EDEVGN--MPSVKYCFVPLKTIAE-ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRD 605
E+ G +P ++Y FV + + + E +DV+GV + SV K + +T KRD
Sbjct: 290 EEAEGETFIPQIQYNFVKIDQLGPYVGGRELVDVIGVVQSVSPTLSVRRKIDNETIPKRD 349
Query: 606 ITLVDQSQASVTMTLWGKEA-----ETFD-ASNKPVIAVKAARVSEFQG---------NL 650
I + D S +VT++LW A E D + P+IA+K+ +VS+FQG +
Sbjct: 350 IVVADDSSKTVTISLWNDLATTTGQELLDMVDSAPIIAIKSLKVSDFQGLSLSTVGRSTI 409
Query: 651 LLMREIQD-QQL-----GMGDKADYCSVRGIIQVFR--GSNTTYK---------ACPSQD 693
+L ++ + +QL G S+ + R G+ + Y + P+
Sbjct: 410 VLNPDLPEAEQLRAWYDSEGKGTSMASIGSDMGASRVGGARSMYSDRVFLSHITSDPNLG 469
Query: 694 CNKKVI------------DQNNGMYRCEKCNKEFNTF-----------------TYRLIL 724
+K V DQ C+ CNK+ + R I+
Sbjct: 470 QDKPVFFSLNAYISLIKPDQTMWYRACKTCNKKVTEAIGSGYWCEGCQKNDAECSLRYIM 529
Query: 725 PVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP------ALKKALFTQYIFRLR 778
+ + D T W++LF ++AE I+G +A E+ ++ LK+A + ++FR+
Sbjct: 530 VIKVSDPTGEAWLSLFNDQAERIVGCSADELDRIRKEEGDDSYLLKLKEATWVPHLFRVS 589
Query: 779 AKLEHY 784
Y
Sbjct: 590 VTQNEY 595
Score = 149 bits (375), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 170/341 (49%), Gaps = 30/341 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN--MPSVKYCFVPLKTIAE-ISPDENIDV 62
A+K+F +++NDYEM+ + V E+ G +P ++Y FV + + + E +DV
Sbjct: 268 ADKQFKTVHNDYEMTLNENAVV----EEAEGETFIPQIQYNFVKIDQLGPYVGGRELVDV 323
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ETFD-ASNK 116
+GV + SV K + +T KRDI + D S +VT++LW A E D +
Sbjct: 324 IGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTVTISLWNDLATTTGQELLDMVDSA 383
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPV----- 170
P+IA+K+ +VS+FQG +LS S + LNPD+PE +L+ W+ ++ T +
Sbjct: 384 PIIAIKSLKVSDFQG-LSLSTVGRSTIVLNPDLPEAEQLRAWYDSEGKGTSMASIGSDMG 442
Query: 171 SQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDC 229
+ R GG + + L D LG DK + S+ I + + T Y+AC + C
Sbjct: 443 ASRVGGARSMYSDRVFLSHITSDPNLGQ-DKPVFFSLNAYISLIKPDQTMWYRACKT--C 499
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
NKKV + Y CE C K + R I+ + + D T W++LF ++AE I+G +A E
Sbjct: 500 NKKVTEAIGSGYWCEGCQKNDAECSLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADE 559
Query: 290 VGESTEDHP------ALKKALFTQYIFRLRAKLEHYNGTKK 324
+ ++ LK+A + ++FR+ Y K+
Sbjct: 560 LDRIRKEEGDDSYLLKLKEATWVPHLFRVSVTQNEYMNEKR 600
>gi|354546965|emb|CCE43698.1| hypothetical protein CPAR2_213410 [Candida parapsilosis]
Length = 644
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 129/212 (60%), Gaps = 2/212 (0%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI ++SPYQN WTIKARV+ K +R W+NA+G GK+FSI+ LDES EI+A+ FN+ R
Sbjct: 196 PIETISPYQNTWTIKARVSYKGELRSWSNAKGEGKVFSINFLDESDEIKASAFNESAERA 255
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
++++E+ KVYYIS + A KKF+++ + YE++ T + C ++ ++P + + FV
Sbjct: 256 YNLLEEGKVYYISKAKVGAARKKFNNLTHPYELTLEKDTEITECFDE--SDVPKLNFNFV 313
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
L I + P+ +DVLG +T K+ K + +RDIT+VD++ +V + LW
Sbjct: 314 KLDKIQNLEPNAIVDVLGALKVVNPPFQITAKSTGKAFDRRDITIVDETGFAVDVGLWNN 373
Query: 624 EAETFDASNKPVIAVKAARVSEFQGNLLLMRE 655
A F VIA K +VS+F G L + +
Sbjct: 374 TAVDFSVEEGTVIAFKGCKVSDFNGRSLSLTQ 405
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 101/346 (29%), Positives = 170/346 (49%), Gaps = 30/346 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A KKF+++ + YE++ T + C ++ ++P + + FV L I + P+ +DVLG
Sbjct: 275 ARKKFNNLTHPYELTLEKDTEITECFDE--SDVPKLNFNFVKLDKIQNLEPNAIVDVLGA 332
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+T K+ K + +RDIT+VD++ +V + LW A F VIA K +
Sbjct: 333 LKVVNPPFQITAKSTGKAFDRRDITIVDETGFAVDVGLWNNTAVDFSVEEGTVIAFKGCK 392
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGG----G 180
VS+F G++LSL+ + + NP PE ++L+GWF + F+ + T
Sbjct: 393 VSDF-NGRSLSLTQAGSIVPNPGTPESYQLKGWFDNVGVKENFKSMKTETNASSSLDRLA 451
Query: 181 AAGNLLLMREIQDQQLGMGD---KADYCSVRGIIQVFRGSNTTYKAC------------P 225
+ + E + + GD ++ Y +V+ + N Y AC P
Sbjct: 452 NRKTIAQVEEETNNNIDGGDQQQQSGYFTVKACFSFTKPENFAYPACTNIVSNNTDSSKP 511
Query: 226 SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGV 285
CNKK+++ N+ +RCE+C+ ++ TYR IL + I D T +W TLF +A+ +LG+
Sbjct: 512 GLPCNKKLVEVND-KWRCERCDLSYDEPTYRYILYISITDATGQLWTTLFDEQAKKLLGI 570
Query: 286 TAQEV------GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
A E+ ES + +A F +Y FRLR K + +N K+
Sbjct: 571 DANELMKLSLPNESHAVAEYISRAYFKEYNFRLRVKQDTFNDQLKL 616
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 23/146 (15%)
Query: 658 DQQLGMGDKADYCSVRGIIQVFRGSNTTYKAC------------PSQDCNKKVIDQNNGM 705
DQQ G Y +V+ + N Y AC P CNKK+++ N+
Sbjct: 471 DQQQQSG----YFTVKACFSFTKPENFAYPACTNIVSNNTDSSKPGLPCNKKLVEVND-K 525
Query: 706 YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV------GEST 759
+RCE+C+ ++ TYR IL + I D T +W TLF +A+ +LG+ A E+ ES
Sbjct: 526 WRCERCDLSYDEPTYRYILYISITDATGQLWTTLFDEQAKKLLGIDANELMKLSLPNESH 585
Query: 760 EDHPALKKALFTQYIFRLRAKLEHYN 785
+ +A F +Y FRLR K + +N
Sbjct: 586 AVAEYISRAYFKEYNFRLRVKQDTFN 611
>gi|340378782|ref|XP_003387906.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Amphimedon queenslandica]
Length = 256
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 131/224 (58%), Gaps = 7/224 (3%)
Query: 108 AETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRF 167
AE FD S PV+A+K+ R+S+F G +L+ S++L+ NPD+PE H+L+GW+ +
Sbjct: 6 AEEFDGSMFPVVALKSVRLSDFNGVSLSALASSTILT-NPDLPEAHQLKGWYDHHGKDQD 64
Query: 168 EPVSQRTGGMGGGAAGNLLLMREIQD-QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS 226
G + L R+I++ QLG +K DY S +G+I + N Y ACPS
Sbjct: 65 VTSLSSRNATGSFSDSAFLTFRQIKELNQLGQQEKPDYFSCKGMIVYLKKENCLYTACPS 124
Query: 227 QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVT 286
QDCNKKV D G Y CEKC K + +F YR+I+ + D+ ++ W+ F +I+G+
Sbjct: 125 QDCNKKVNDDGTGNYFCEKCGKSYPSFKYRMIMKLNCVDYLDNCWLDTFHEGGSAIVGMD 184
Query: 287 AQEVGESTEDHPA-----LKKALFTQYIFRLRAKLEHYNGTKKI 325
Q++GE E A +++A F ++IFR+RAK++ YN +++
Sbjct: 185 GQKLGELREQDAAQFDNIMQEAYFKEFIFRVRAKVDTYNDEQRL 228
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 104/218 (47%), Gaps = 57/218 (26%)
Query: 625 AETFDASNKPVIAVKAARVSEFQG------------------------------------ 648
AE FD S PV+A+K+ R+S+F G
Sbjct: 6 AEEFDGSMFPVVALKSVRLSDFNGVSLSALASSTILTNPDLPEAHQLKGWYDHHGKDQDV 65
Query: 649 ---------------NLLLMREIQD-QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQ 692
L R+I++ QLG +K DY S +G+I + N Y ACPSQ
Sbjct: 66 TSLSSRNATGSFSDSAFLTFRQIKELNQLGQQEKPDYFSCKGMIVYLKKENCLYTACPSQ 125
Query: 693 DCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA 752
DCNKKV D G Y CEKC K + +F YR+I+ + D+ ++ W+ F +I+G+
Sbjct: 126 DCNKKVNDDGTGNYFCEKCGKSYPSFKYRMIMKLNCVDYLDNCWLDTFHEGGSAIVGMDG 185
Query: 753 QEVGESTEDHPA-----LKKALFTQYIFRLRAKLEHYN 785
Q++GE E A +++A F ++IFR+RAK++ YN
Sbjct: 186 QKLGELREQDAAQFDNIMQEAYFKEFIFRVRAKVDTYN 223
>gi|269860800|ref|XP_002650118.1| replication factor-A protein 1 [Enterocytozoon bieneusi H348]
gi|220066438|gb|EED43919.1| replication factor-A protein 1 [Enterocytozoon bieneusi H348]
Length = 567
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/385 (26%), Positives = 198/385 (51%), Gaps = 48/385 (12%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI ++P+ W I+ R+ KT ++++NN G GK+FS +++DE+ +I+ F D F
Sbjct: 161 PIKDINPFLINWKIQGRILQKTNLKKFNNKNGEGKVFSFEIMDETEQIKVICFGDAAEMF 220
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+ +IE +++Y +++ +K ANK+F++ N DYE+ ++ + CN + N+P + + F
Sbjct: 221 YPLIENNQIYSLTHGQIKMANKRFNTNNCDYEIHLDTNSIIELCN--DASNIPMISFKFK 278
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
+ ++ I+ +D++G+ + + ++ K++ + KRDI ++D++ + +TLWG
Sbjct: 279 KINELSLITSL--VDIVGIIKEIYPIQNIITKSDNREISKRDILVIDET-GYIKVTLWGD 335
Query: 624 EAETFDASNKPVIAVKAARVSEFQG-------------NLLL-------------MREIQ 657
+A + VI +K +V E+ G N +L +EI
Sbjct: 336 KALQ-EYQKDSVICLKGFKVIEYNGINLGSVSSSQVVLNSMLPEVIKLVKWYETEGKEIS 394
Query: 658 DQQLGMGDK-----------ADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMY 706
++ + K +Y + G I + N Y ACP+ C+KKVI ++ Y
Sbjct: 395 VEKTKIYTKRYSIANITESNIEYGIIHGTITYIKEDNLYYMACPTDGCSKKVIQEDLEHY 454
Query: 707 RCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE---DHP 763
RCEKCN F T YR + + I D+T +W+ +F + A+ I ++A+++ + E D+
Sbjct: 455 RCEKCNNVFKTCNYRYMTVLGISDFTGQLWINVFNDVAKQIFNISAEDLHKLKEIDSDNA 514
Query: 764 A--LKKALFTQYIFRLRAKLEHYNK 786
+K + ++ ++R + YN+
Sbjct: 515 TKLVKNIIGKEFAIKVRVVKQIYNE 539
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 172/350 (49%), Gaps = 38/350 (10%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F++ N DYE+ ++ + CN+ N+P + + F + ++ I+ +D++G+
Sbjct: 240 ANKRFNTNNCDYEIHLDTNSIIELCND--ASNIPMISFKFKKINELSLITSL--VDIVGI 295
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ + ++ K++ + KRDI ++D++ + +TLWG +A + VI +K +
Sbjct: 296 IKEIYPIQNIITKSDNREISKRDILVIDET-GYIKVTLWGDKALQ-EYQKDSVICLKGFK 353
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ---TNTRFEPVSQRTGGMGGGAA 182
V E+ G S+S S V+ LN +PE KL W+ T+ + + + +
Sbjct: 354 VIEYNGINLGSVSSSQVV-LNSMLPEVIKLVKWYETEGKEISVEKTKIYTKRYSIANITE 412
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N+ +Y + G I + N Y ACP+ C+KKVI ++ YR
Sbjct: 413 SNI-----------------EYGIIHGTITYIKEDNLYYMACPTDGCSKKVIQEDLEHYR 455
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE---DHPA 299
CEKCN F T YR + + I D+T +W+ +F + A+ I ++A+++ + E D+
Sbjct: 456 CEKCNNVFKTCNYRYMTVLGISDFTGQLWINVFNDVAKQIFNISAEDLHKLKEIDSDNAT 515
Query: 300 --LKKALFTQYIFRLRAKLEHYN--GTKKI----PDGVNINSFAMLATQL 341
+K + ++ ++R + YN K+I D +N++ L T+L
Sbjct: 516 KLVKNIIGKEFAIKVRVVKQIYNEETIKRINCLELDEINLDQEIKLMTEL 565
>gi|440491670|gb|ELQ74291.1| Single-stranded DNA-binding replication protein A
[Trachipleistophora hominis]
Length = 577
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 111/380 (29%), Positives = 186/380 (48%), Gaps = 48/380 (12%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI +L+P+Q KW +K V K+ +RE+ + GK FS +LLD++G I+ FND + F
Sbjct: 178 PIAALNPFQTKWIVKGTVQKKSEMREFK--KKDGKFFSFELLDKTGNIKCVAFNDGADLF 235
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+ MI + V IS +K NKKF++ ++DYE+ ++ V NE+ + S+ Y
Sbjct: 236 YGMIVEGSVVEISKAVVKMCNKKFANTSSDYEIHLEKNSVVSLLNEEGL----SMSYDLC 291
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
+ +A N DV+G+ +A +S V K +Q+ KRD+ L D++ +V TLWG
Sbjct: 292 KISNLAGRVNKANCDVIGIVHEAFPVSVVLAKASQREIKKRDLVLADET-GTVRATLWGD 350
Query: 624 EAETFDASNKPVIAVKAARVSEFQGNLLL-------------------MREIQDQQ---- 660
++E + + PV+ +K RV EF ++L +R D+
Sbjct: 351 KSE-IELDDHPVLLLKDVRVGEFNNAVVLSTAFGSAVKVDPEMDEAYALRGWYDEHKQSV 409
Query: 661 -LGMGDKADYCSVRGI---------IQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 710
+ + DY + I + R N Y AC + +CNKKV + G Y CE+
Sbjct: 410 VVERPQRNDYAFIEEIQGYGTCSATVLFIREDNLFYNAC-ANNCNKKVSLTDEGYY-CER 467
Query: 711 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----L 765
CN+ R + + + D+T VW+ +F + G+TA E+ + E++ L
Sbjct: 468 CNQTREICNIRYLTTLHVADFTQQVWLNVFDDFCTEFFGMTAVELKKMGEENATQLQNYL 527
Query: 766 KKALFTQYIFRLRAKLEHYN 785
K L+ +Y+ +++ E YN
Sbjct: 528 KTLLYREYVIKMKRSEEVYN 547
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 156/324 (48%), Gaps = 32/324 (9%)
Query: 7 NKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVC 66
NKKF++ ++DYE+ ++ V NE+ + S+ Y + +A N DV+G+
Sbjct: 256 NKKFANTSSDYEIHLEKNSVVSLLNEEGL----SMSYDLCKISNLAGRVNKANCDVIGIV 311
Query: 67 IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARV 126
+A +S V K +Q+ KRD+ L D++ +V TLWG ++E + + PV+ +K RV
Sbjct: 312 HEAFPVSVVLAKASQREIKKRDLVLADET-GTVRATLWGDKSE-IELDDHPVLLLKDVRV 369
Query: 127 SEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLL 186
EF LS + S + ++P++ E + L+GW+ + QR +
Sbjct: 370 GEFNNAVVLSTAFGSAVKVDPEMDEAYALRGWYDEHKQSVVVERPQRN---------DYA 420
Query: 187 LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKC 246
+ EIQ Y + + R N Y AC + +CNKKV + G Y CE+C
Sbjct: 421 FIEEIQG----------YGTCSATVLFIREDNLFYNAC-ANNCNKKVSLTDEGYY-CERC 468
Query: 247 NKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----LK 301
N+ R + + + D+T VW+ +F + G+TA E+ + E++ LK
Sbjct: 469 NQTREICNIRYLTTLHVADFTQQVWLNVFDDFCTEFFGMTAVELKKMGEENATQLQNYLK 528
Query: 302 KALFTQYIFRLRAKLEHYNGTKKI 325
L+ +Y+ +++ E YNG ++
Sbjct: 529 TLLYREYVIKMKRSEEVYNGEMRV 552
>gi|340386214|ref|XP_003391603.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Amphimedon queenslandica]
Length = 251
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 131/224 (58%), Gaps = 7/224 (3%)
Query: 108 AETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRF 167
AE FD S PV+A+K+ R+S+F G +L+ S++L+ NPD+PE H+L+GW+ +
Sbjct: 1 AEEFDGSMFPVVALKSVRLSDFNGVSLSALASSTILT-NPDLPEAHQLKGWYDHHGKDQD 59
Query: 168 EPVSQRTGGMGGGAAGNLLLMREIQD-QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS 226
G + L R+I++ QLG +K DY S +G+I + N Y ACPS
Sbjct: 60 VTSLSSRNATGSFSDSAFLTFRQIKELNQLGQQEKPDYFSCKGMIVYLKKENCLYTACPS 119
Query: 227 QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVT 286
QDCNKKV D G Y CEKC K + +F YR+I+ + D+ ++ W+ F +I+G+
Sbjct: 120 QDCNKKVNDDGTGNYFCEKCGKSYPSFKYRVIMKLNCVDYLDNCWLDTFHEGGSAIVGMD 179
Query: 287 AQEVGESTEDHPA-----LKKALFTQYIFRLRAKLEHYNGTKKI 325
Q++GE E A +++A F ++IFR+RAK++ YN +++
Sbjct: 180 GQKLGELREQDAAQFDNIMQEAYFKEFIFRVRAKVDTYNDEQRL 223
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 104/218 (47%), Gaps = 57/218 (26%)
Query: 625 AETFDASNKPVIAVKAARVSEFQG------------------------------------ 648
AE FD S PV+A+K+ R+S+F G
Sbjct: 1 AEEFDGSMFPVVALKSVRLSDFNGVSLSALASSTILTNPDLPEAHQLKGWYDHHGKDQDV 60
Query: 649 ---------------NLLLMREIQD-QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQ 692
L R+I++ QLG +K DY S +G+I + N Y ACPSQ
Sbjct: 61 TSLSSRNATGSFSDSAFLTFRQIKELNQLGQQEKPDYFSCKGMIVYLKKENCLYTACPSQ 120
Query: 693 DCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA 752
DCNKKV D G Y CEKC K + +F YR+I+ + D+ ++ W+ F +I+G+
Sbjct: 121 DCNKKVNDDGTGNYFCEKCGKSYPSFKYRVIMKLNCVDYLDNCWLDTFHEGGSAIVGMDG 180
Query: 753 QEVGESTEDHPA-----LKKALFTQYIFRLRAKLEHYN 785
Q++GE E A +++A F ++IFR+RAK++ YN
Sbjct: 181 QKLGELREQDAAQFDNIMQEAYFKEFIFRVRAKVDTYN 218
>gi|293331519|ref|NP_001169500.1| uncharacterized protein LOC100383373 [Zea mays]
gi|224029699|gb|ACN33925.1| unknown [Zea mays]
Length = 656
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/352 (31%), Positives = 182/352 (51%), Gaps = 40/352 (11%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K ++ +NN++E+ +T+ C DE ++P+ ++ F + I + +DV+G
Sbjct: 294 PAKKDYNHLNNEWEIFLEPQSTIELC-LDENSSIPAQRFSFSSIDKIENSENNAIVDVIG 352
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG--------KEAETFDASNK 116
V + + S+ + N KR ITL D S SV +T+WG + E +
Sbjct: 353 V-VTSVNPSTTIQRKNGMEAQKRTITLNDMSGRSVELTMWGDFCNREGSQLQEMVECGAF 411
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-------STQTNTR-FE 168
PV+AVKA +V+++ G K++ SS L +NPD+ E H L+ WF STQ+ +R F
Sbjct: 412 PVLAVKAGKVNDYSG-KSVGTISSSQLHINPDLAEAHSLRQWFDCGGRDASTQSISRDFT 470
Query: 169 PVSQRTGGMGGGAAGNLL--LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS 226
P A+ N + + +I+D LGMGDK D+ +V+ I + + Y ACP+
Sbjct: 471 P----------SASWNEVRKTVAQIKDDGLGMGDKPDWVTVKAAISFIKTDSFCYTACPN 520
Query: 227 ----QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESI 282
+ C KKV ++G + C+KCN+EF YR +L + I D T + VT FQ+ + I
Sbjct: 521 VIGDRQCGKKVTKSDSGNWLCDKCNQEFPECDYRYLLQLNIQDHTGTTSVTAFQDRGQEI 580
Query: 283 LGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYNGTKKIPDGV 329
LG +A+E+ E+ L L+ Y+FRL+ K E Y +++ + V
Sbjct: 581 LGCSARELNIFKENKDPRYTDVLINCLYQNYLFRLKVKEEQYGDVRQVKNTV 632
Score = 155 bits (393), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 124/386 (32%), Positives = 189/386 (48%), Gaps = 70/386 (18%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DGV A+ A+QL D+ G + ++VQ+ YIV+ V G NR ++IL + +
Sbjct: 49 ISDGV-ATGHALFASQLCDLARSGVVRRGSVVQLLDYIVNNV--GPTRNRKAIVILNMEV 105
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSST-----QQTPAATNTNGSNGVHNNV---------- 429
+ EI IGNP + D+SS Q A N + + N V
Sbjct: 106 LVAECEI---IGNPALPPESGDSSSNSLRADQFNGAPPNGSMAGSTLNKVIKPSDNAPVI 162
Query: 430 ----------AIPRQAS---------------APVVQTH-------------PIVSLSPY 451
+PR + AP ++H PI +L+PY
Sbjct: 163 QRSMTGNSLNMVPRPSDNAQVFQPTVQPSYRPAPKYRSHGTIMKNDAPARIIPIPALNPY 222
Query: 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKD 510
Q +W IKARVT K IR ++NA+G GK+FS DLLD + GEIRAT FN +RF++++E
Sbjct: 223 QGRWAIKARVTAKGEIRRYHNAKGDGKVFSFDLLDTDGGEIRATCFNALVDRFYEVVEVG 282
Query: 511 KVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE 570
KVY +S LKPA K ++ +NN++E+ +T+ C DE ++P+ ++ F + I
Sbjct: 283 KVYVVSRGNLKPAKKDYNHLNNEWEIFLEPQSTIELC-LDENSSIPAQRFSFSSIDKIEN 341
Query: 571 ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG-------- 622
+ +DV+GV + + S+ + N KR ITL D S SV +T+WG
Sbjct: 342 SENNAIVDVIGV-VTSVNPSTTIQRKNGMEAQKRTITLNDMSGRSVELTMWGDFCNREGS 400
Query: 623 KEAETFDASNKPVIAVKAARVSEFQG 648
+ E + PV+AVKA +V+++ G
Sbjct: 401 QLQEMVECGAFPVLAVKAGKVNDYSG 426
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 77/139 (55%), Gaps = 9/139 (6%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS----QDCNKKVIDQNNGMYRCEK 710
+I+D LGMGDK D+ +V+ I + + Y ACP+ + C KKV ++G + C+K
Sbjct: 484 QIKDDGLGMGDKPDWVTVKAAISFIKTDSFCYTACPNVIGDRQCGKKVTKSDSGNWLCDK 543
Query: 711 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PAL 765
CN+EF YR +L + I D T + VT FQ+ + ILG +A+E+ E+ L
Sbjct: 544 CNQEFPECDYRYLLQLNIQDHTGTTSVTAFQDRGQEILGCSARELNIFKENKDPRYTDVL 603
Query: 766 KKALFTQYIFRLRAKLEHY 784
L+ Y+FRL+ K E Y
Sbjct: 604 INCLYQNYLFRLKVKEEQY 622
>gi|440795064|gb|ELR16205.1| replication factora protein 1 (rpa1) subfamily protein
[Acanthamoeba castellanii str. Neff]
Length = 553
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 103/332 (31%), Positives = 164/332 (49%), Gaps = 66/332 (19%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DG++ AMLATQLN+++ DG L IV++ YI + V
Sbjct: 49 ISDGIHFQQ-AMLATQLNELVNDGKLQPKCIVRLNEYICNTVH----------------- 90
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHP 444
G + G P P + T P
Sbjct: 91 -------GRRFGGPSP------------------------------------SLAEGTMP 107
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDE-SGEIRATMFNDECNRF 503
I L+PYQN+WTIKAR+T+K+ +R +NNARG LFS+DLLD GEIR T F + ++
Sbjct: 108 IKGLNPYQNRWTIKARITHKSDMRPFNNARGQSFLFSVDLLDAFGGEIRCTFFGEAATQW 167
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+D IE +V+ I ++K ANK+FS++ NDYE+S + + P +D ++P K+ FV
Sbjct: 168 NDQIEAGQVFLIGRGSVKYANKRFSTLKNDYEISLDKNALIQPTEDDP--SIPFYKFNFV 225
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
+ + + DE ID+LG +++ + + + + KR + + D S A V +TLWG+
Sbjct: 226 DIADLGGHAKDETIDILGAVLESGAIQDIRTQAGNE-LQKRVVKVGDSSNAQVEVTLWGE 284
Query: 624 EAETFDASNKPVIAVKAARVSEF-QGNLLLMR 654
+A + V+ K ++S++ Q +L ++R
Sbjct: 285 QAAQWSGDRGLVVLFKGVKISDYNQRSLTVLR 316
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 163/345 (47%), Gaps = 32/345 (9%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+FS++ NDYE+S + + P +D ++P K+ FV + + + DE ID+LG
Sbjct: 187 ANKRFSTLKNDYEISLDKNALIQPTEDDP--SIPFYKFNFVDIADLGGHAKDETIDILGA 244
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+++ + + + + KR + + D S A V +TLWG++A + V+ K +
Sbjct: 245 VLESGAIQDIRTQAGNE-LQKRVVKVGDSSNAQVEVTLWGEQAAQWSGDRGLVVLFKGVK 303
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
+S++ ++L++ +S L P IPE +++ WF T +S+ GG
Sbjct: 304 ISDYNQ-RSLTVLRTSKLEFEPRIPEADRVREWFETAGQGEVASMSRNDFKGRGGGGEGG 362
Query: 186 LLMREIQD-----------QQLGMGDKAD-YCSVRGIIQVFRGSNTT---YKACPSQDCN 230
+ + +Q+ G + Y SVR + + S Y+ACP++ CN
Sbjct: 363 FGGGDKRPWDETRKSFAAVKQVAFGGQESVYFSVRATVTEIKHSRDHPPWYEACPTEKCN 422
Query: 231 KKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL-GVTAQE 289
KKV G Y C KC + + R +L + D + S W+T F + A +L G TA +
Sbjct: 423 KKVTSVG-GAYHCTKCGATHDHYKPRYVLSLNANDHSGSSWLTCFNDTASDVLNGTTADD 481
Query: 290 V--------GEST-EDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ GES ED +KALF Y R+RA Y G K+
Sbjct: 482 LLEMLSRPQGESQYED--VFQKALFKSYNLRVRATQSEYEGENKV 524
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 16/134 (11%)
Query: 664 GDKADYCSVRGIIQVFRGSNTT---YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTY 720
G ++ Y SVR + + S Y+ACP++ CNKKV G Y C KC + +
Sbjct: 388 GQESVYFSVRATVTEIKHSRDHPPWYEACPTEKCNKKVTSVG-GAYHCTKCGATHDHYKP 446
Query: 721 RLILPVMIGDWTNSVWVTLFQNEAESIL-GVTAQEV--------GEST-EDHPALKKALF 770
R +L + D + S W+T F + A +L G TA ++ GES ED +KALF
Sbjct: 447 RYVLSLNANDHSGSSWLTCFNDTASDVLNGTTADDLLEMLSRPQGESQYED--VFQKALF 504
Query: 771 TQYIFRLRAKLEHY 784
Y R+RA Y
Sbjct: 505 KSYNLRVRATQSEY 518
>gi|154340545|ref|XP_001566229.1| putative replication factor A, 51kDa subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134063548|emb|CAM39729.1| putative replication factor A, 51kDa subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 467
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 120/405 (29%), Positives = 185/405 (45%), Gaps = 65/405 (16%)
Query: 441 QTHPIVSLSPY-QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE 499
Q PI SL+P+ KW I+ARVT+KT IR WN GKLFS L+DES IRAT+FND
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKTDIRTWNKPTSQGKLFSFTLIDESAAIRATVFNDA 67
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSV 558
+ F +I +VYY S +K AN++FS++NNDYE++F S+ ++ +D +P
Sbjct: 68 VDTFEPLIVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPMQ 127
Query: 559 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM 618
+Y FVP++ + + +DVLGV + ++SS+T K+ + +KR++ + D + A+V +
Sbjct: 128 RYNFVPIELLKQREVGSLVDVLGVVLKVDDVSSITQKSTGRELVKRNVKMGDMT-AAVEV 186
Query: 619 TLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQV 678
T W EA+T+ V+A++ +V F G L + D D +
Sbjct: 187 TFWNDEAQTWGYPVGTVVALRQLKVGSFDGVTLSSTYQTKIDVNPTDLPDVKKLATWYVS 246
Query: 679 FRGSNTTY----------KACPSQDCNKKVID--QNNGMYR------------------- 707
G+N T A D +K +D Q+ G+ R
Sbjct: 247 TGGANVTSLSSQGLGAINGAGGENDRGRKYLDEIQSEGIGRGLKPEYVDVRCVPIYFKQD 306
Query: 708 ------CEKCNKEFN------------------TFTYRLILPVMIGDWTNSVWVTLFQNE 743
C CNK+ T T R ++ + + D + W+TLF
Sbjct: 307 AQWYDACPTCNKKVTEEGAQGDRFRCEKCDKTVTPTQRYLVSIQVTDNVSQAWLTLFNEA 366
Query: 744 AESILGVTAQEVGESTEDHPALKKALFTQ------YIFRLRAKLE 782
G+ A E+ ++ P L A Q + RLR K E
Sbjct: 367 GIEFFGMEAAELKRRAQEDP-LYIAKLAQGRMNRPVVMRLRVKEE 410
Score = 159 bits (401), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 169/326 (51%), Gaps = 20/326 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
AN++FS++NNDYE++F S+ ++ +D +P +Y FVP++ + + +DVLG
Sbjct: 91 ANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPMQRYNFVPIELLKQREVGSLVDVLG 150
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V + ++SS+T K+ + +KR++ + D + A+V +T W EA+T+ V+A++
Sbjct: 151 VVLKVDDVSSITQKSTGRELVKRNVKMGDMT-AAVEVTFWNDEAQTWGYPVGTVVALRQL 209
Query: 125 RVSEFQGGKTLSLSMSSVLSLNP-DIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAG 183
+V F G TLS + + + +NP D+P+ KL W+ + +S + G GA G
Sbjct: 210 KVGSFD-GVTLSSTYQTKIDVNPTDLPDVKKLATWYVSTGGANVTSLSSQGLGAINGAGG 268
Query: 184 ----NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ--N 237
+ EIQ + +G G K +Y VR + F+ Y ACP+ CNKKV ++
Sbjct: 269 ENDRGRKYLDEIQSEGIGRGLKPEYVDVRCVPIYFKQDAQWYDACPT--CNKKVTEEGAQ 326
Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH 297
+RCEKC+K T T R ++ + + D + W+TLF G+ A E+ ++
Sbjct: 327 GDRFRCEKCDKTV-TPTQRYLVSIQVTDNVSQAWLTLFNEAGIEFFGMEAAELKRRAQED 385
Query: 298 PALKKALFTQ------YIFRLRAKLE 317
P L A Q + RLR K E
Sbjct: 386 P-LYIAKLAQGRMNRPVVMRLRVKEE 410
>gi|413924352|gb|AFW64284.1| hypothetical protein ZEAMMB73_597518 [Zea mays]
Length = 761
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 112/352 (31%), Positives = 182/352 (51%), Gaps = 40/352 (11%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K ++ +NN++E+ +T+ C DE ++P+ ++ F + I + +DV+G
Sbjct: 399 PAKKDYNHLNNEWEIFLEPQSTIELC-LDENSSIPAQRFSFSSIDKIENSENNAIVDVIG 457
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG--------KEAETFDASNK 116
V + + S+ + N KR ITL D S SV +T+WG + E +
Sbjct: 458 V-VTSVNPSTTIQRKNGMEAQKRTITLNDMSGRSVELTMWGDFCNREGSQLQEMVECGAF 516
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-------STQTNTR-FE 168
PV+AVKA +V+++ G K++ SS L +NPD+ E H L+ WF STQ+ +R F
Sbjct: 517 PVLAVKAGKVNDYSG-KSVGTISSSQLHINPDLAEAHSLRQWFDCGGRDASTQSISRDFT 575
Query: 169 PVSQRTGGMGGGAAGNLL--LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS 226
P A+ N + + +I+D LGMGDK D+ +V+ I + + Y ACP+
Sbjct: 576 P----------SASWNEVRKTVAQIKDDGLGMGDKPDWVTVKAAISFIKTDSFCYTACPN 625
Query: 227 ----QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESI 282
+ C KKV ++G + C+KCN+EF YR +L + I D T + VT FQ+ + I
Sbjct: 626 VIGDRQCGKKVTKSDSGNWLCDKCNQEFPECDYRYLLQLNIQDHTGTTSVTAFQDRGQEI 685
Query: 283 LGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYNGTKKIPDGV 329
LG +A+E+ E+ L L+ Y+FRL+ K E Y +++ + V
Sbjct: 686 LGCSARELNIFKENKDPRYTDVLINCLYQNYLFRLKVKEEQYGDVRQVKNTV 737
Score = 155 bits (391), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 124/386 (32%), Positives = 189/386 (48%), Gaps = 70/386 (18%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DGV A+ A+QL D+ G + ++VQ+ YIV+ V G NR ++IL + +
Sbjct: 154 ISDGV-ATGHALFASQLCDLARSGVVRRGSVVQLLDYIVNNV--GPTRNRKAIVILNMEV 210
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSST-----QQTPAATNTNGSNGVHNNV---------- 429
+ EI IGNP + D+SS Q A N + + N V
Sbjct: 211 LVAECEI---IGNPALPPESGDSSSNSLRADQFNGAPPNGSMAGSTLNKVIKPSDNAPVI 267
Query: 430 ----------AIPRQAS---------------APVVQTH-------------PIVSLSPY 451
+PR + AP ++H PI +L+PY
Sbjct: 268 QRSMTGNSLNMVPRPSDNAQVFQPTVQPSYRPAPKYRSHGTIMKNDAPARIIPIPALNPY 327
Query: 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKD 510
Q +W IKARVT K IR ++NA+G GK+FS DLLD + GEIRAT FN +RF++++E
Sbjct: 328 QGRWAIKARVTAKGEIRRYHNAKGDGKVFSFDLLDTDGGEIRATCFNALVDRFYEVVEVG 387
Query: 511 KVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE 570
KVY +S LKPA K ++ +NN++E+ +T+ C DE ++P+ ++ F + I
Sbjct: 388 KVYVVSRGNLKPAKKDYNHLNNEWEIFLEPQSTIELC-LDENSSIPAQRFSFSSIDKIEN 446
Query: 571 ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG-------- 622
+ +DV+GV + + S+ + N KR ITL D S SV +T+WG
Sbjct: 447 SENNAIVDVIGV-VTSVNPSTTIQRKNGMEAQKRTITLNDMSGRSVELTMWGDFCNREGS 505
Query: 623 KEAETFDASNKPVIAVKAARVSEFQG 648
+ E + PV+AVKA +V+++ G
Sbjct: 506 QLQEMVECGAFPVLAVKAGKVNDYSG 531
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 77/139 (55%), Gaps = 9/139 (6%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS----QDCNKKVIDQNNGMYRCEK 710
+I+D LGMGDK D+ +V+ I + + Y ACP+ + C KKV ++G + C+K
Sbjct: 589 QIKDDGLGMGDKPDWVTVKAAISFIKTDSFCYTACPNVIGDRQCGKKVTKSDSGNWLCDK 648
Query: 711 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PAL 765
CN+EF YR +L + I D T + VT FQ+ + ILG +A+E+ E+ L
Sbjct: 649 CNQEFPECDYRYLLQLNIQDHTGTTSVTAFQDRGQEILGCSARELNIFKENKDPRYTDVL 708
Query: 766 KKALFTQYIFRLRAKLEHY 784
L+ Y+FRL+ K E Y
Sbjct: 709 INCLYQNYLFRLKVKEEQY 727
>gi|71030044|ref|XP_764664.1| replication factor A protein [Theileria parva strain Muguga]
gi|68351620|gb|EAN32381.1| replication factor A protein, putative [Theileria parva]
Length = 458
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 109/401 (27%), Positives = 198/401 (49%), Gaps = 67/401 (16%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
I L+ Y KW+I+ARV K+ IR++NN RG +LFS+DL D +GEIRA F + N+++
Sbjct: 44 ISDLTLYTPKWSIRARVVFKSEIRKFNNQRGESQLFSVDLCDSNGEIRAVFFGESVNKWY 103
Query: 505 DMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP 564
+E+ +VY IS LKPANK+F+++ + E+ S+ + DE ++PS Y F P
Sbjct: 104 SFLEEGQVYSISGGQLKPANKRFNNLKHTCELILDESSHIQLFQNDE--SIPSFCYSFTP 161
Query: 565 LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE 624
L + ++ E IDV+ + + A ++ + K+ KRD L D + +V +T WG++
Sbjct: 162 LDQLQDVKSGETIDVIAIVVTAKDVQKINNKSTGNNVEKRDFLLCDSTNTTVWVTSWGQK 221
Query: 625 AETFD---ASNKPVIAVKAARVSEFQGN-----------LLLMREIQD---------QQL 661
+ F+ ++ P++ + + QG+ L +R+ + Q++
Sbjct: 222 TQLFNYQGENSHPLVGEWQGKKLDVQGSTQVICEPVIPEALKLRKWWNENSQNVNFQQEV 281
Query: 662 GMGDKADY---CSVRGI-------------------------IQVFRGSNTTYKACPSQD 693
+ + C++ I I+V + +N + +C
Sbjct: 282 SKTTNSTFNKLCTISHIISSTNQGLQFKSIDSNGMVFTTRALIEVLKDTNFCFPSCTG-- 339
Query: 694 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 753
C KK+ + + G++ C KCN N + IL + I D T+ +W T + ESI+G+ A
Sbjct: 340 CRKKMTN-DQGIWYCPKCNSSTNP-VHLYILNIKIVDETSHIWATAMSDVGESIMGIKAY 397
Query: 754 EVGESTEDHPA----------LKKALFTQYIFRLRAKLEHY 784
++ + E+ P+ + A T+YIF+++A +E++
Sbjct: 398 KLIKLMENGPSDENEKNFVNYFEDARLTEYIFKIKATVENF 438
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 161/335 (48%), Gaps = 25/335 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK+F+++ + E+ S+ + DE ++PS Y F PL + ++ E IDV+
Sbjct: 121 PANKRFNNLKHTCELILDESSHIQLFQNDE--SIPSFCYSFTPLDQLQDVKSGETIDVIA 178
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+ + A ++ + K+ KRD L D + +V +T WG++ + F+ +
Sbjct: 179 IVVTAKDVQKINNKSTGNNVEKRDFLLCDSTNTTVWVTSWGQKTQLFNYQGEN----SHP 234
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQT-NTRFEPVSQRTGGMGGGAAG 183
V E+Q GK L + S+ + P IPE KL+ W++ + N F+ +T
Sbjct: 235 LVGEWQ-GKKLDVQGSTQVICEPVIPEALKLRKWWNENSQNVNFQQEVSKTTNSTFNKLC 293
Query: 184 NLLLMREIQDQQL---GMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGM 240
+ + +Q L + + R +I+V + +N + +C C KK+ + + G+
Sbjct: 294 TISHIISSTNQGLQFKSIDSNGMVFTTRALIEVLKDTNFCFPSCTG--CRKKMTN-DQGI 350
Query: 241 YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA- 299
+ C KCN N + IL + I D T+ +W T + ESI+G+ A ++ + E+ P+
Sbjct: 351 WYCPKCNSSTNP-VHLYILNIKIVDETSHIWATAMSDVGESIMGIKAYKLIKLMENGPSD 409
Query: 300 ---------LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A T+YIF+++A +E++ +I
Sbjct: 410 ENEKNFVNYFEDARLTEYIFKIKATVENFMDEPRI 444
>gi|149248590|ref|XP_001528682.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448636|gb|EDK43024.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 658
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 104/350 (29%), Positives = 176/350 (50%), Gaps = 41/350 (11%)
Query: 10 FSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDA 69
F+++ + YE+ + + C ++ N+P + + FV L I + + +DV+G
Sbjct: 288 FNNLTHPYELQLEKDSEITECFDE--SNVPKLNFNFVKLDQIQNLDANAIVDVIGALKVV 345
Query: 70 AELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEF 129
+T K+ K + +RDIT+VD+S +V + LW + A F VIA K +VS+F
Sbjct: 346 NPPFQITAKSTGKAFDRRDITIVDESGFAVDIGLWNQTAADFAVEEGSVIAFKGCKVSDF 405
Query: 130 QGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMR 189
G+TLSL+ S L NP IPE + L+GW+ N + + G + NL +M
Sbjct: 406 N-GRTLSLTQSGSLIANPGIPESYHLKGWYD---NIGVKENYKSLKTESGAGSNNLSVME 461
Query: 190 ---------EIQDQQLG---MGDKADYCSVRGIIQVFRGSNTTYKACPS----------- 226
+++D+ +G G+K +Y S + + + N Y ACP+
Sbjct: 462 RFAQRKMISQVEDENIGGQNGGEKLEYFSTKASLSYAKPENFAYPACPNILSQSGDASLS 521
Query: 227 ------QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 280
CNKK++ Q + +RCE+CN EF+ T+R IL I D + +WVTLF +A+
Sbjct: 522 GAGARQNPCNKKLV-QYDDKWRCERCNMEFDRPTWRYILNCGIMDASGQIWVTLFDEQAK 580
Query: 281 SILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+LG+ A E+ E ++++ + + F ++ FR+RAK + +N KI
Sbjct: 581 KLLGMEANELVELSQENQNAAAEVIHRNYFREFNFRIRAKQDTFNDQLKI 630
Score = 156 bits (394), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 127/210 (60%), Gaps = 2/210 (0%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI +LSPYQN WTI+ARV+ K +R W+NA+G GK+FS++ LDES EI+A+ FN+ +
Sbjct: 205 PIETLSPYQNNWTIRARVSYKGELRTWSNAKGEGKVFSVNFLDESDEIKASAFNETAEKA 264
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
++++E+ KVYYIS + A KKF+++ + YE+ + + C ++ N+P + + FV
Sbjct: 265 YNILEEGKVYYISKAKVAAARKKFNNLTHPYELQLEKDSEITECFDE--SNVPKLNFNFV 322
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
L I + + +DV+G +T K+ K + +RDIT+VD+S +V + LW +
Sbjct: 323 KLDQIQNLDANAIVDVIGALKVVNPPFQITAKSTGKAFDRRDITIVDESGFAVDIGLWNQ 382
Query: 624 EAETFDASNKPVIAVKAARVSEFQGNLLLM 653
A F VIA K +VS+F G L +
Sbjct: 383 TAADFAVEEGSVIAFKGCKVSDFNGRTLSL 412
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 85/159 (53%), Gaps = 26/159 (16%)
Query: 652 LMREIQDQQLGM---GDKADYCSVRGIIQVFRGSNTTYKACPS----------------- 691
++ +++D+ +G G+K +Y S + + + N Y ACP+
Sbjct: 468 MISQVEDENIGGQNGGEKLEYFSTKASLSYAKPENFAYPACPNILSQSGDASLSGAGARQ 527
Query: 692 QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVT 751
CNKK++ Q + +RCE+CN EF+ T+R IL I D + +WVTLF +A+ +LG+
Sbjct: 528 NPCNKKLV-QYDDKWRCERCNMEFDRPTWRYILNCGIMDASGQIWVTLFDEQAKKLLGME 586
Query: 752 AQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYN 785
A E+ E ++++ + + F ++ FR+RAK + +N
Sbjct: 587 ANELVELSQENQNAAAEVIHRNYFREFNFRIRAKQDTFN 625
>gi|323449521|gb|EGB05408.1| hypothetical protein AURANDRAFT_11223 [Aureococcus anophagefferens]
Length = 366
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 111/367 (30%), Positives = 164/367 (44%), Gaps = 64/367 (17%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNR 502
P+ SL+PY N+WT+KA+V K I W+NARG G LF + L D GE I A F + C +
Sbjct: 1 PVASLNPYMNRWTLKAKVAVKNDIVSWSNARGDGTLFKVTLADADGEEIEAVFFKEACAK 60
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPC-NEDEVG-NMPSVKY 560
+H + + VYY S +KP+N ++S+ YE++F ++ + C + +G + KY
Sbjct: 61 YHAALVEGGVYYFSGGKVKPSNPRYSATKCGYEVTFDMASKIEACADASGIGLCIGGTKY 120
Query: 561 CFVPLKTIAEISPDENIDVLGVCIDAAELSSVTG-KTNQKTYMKRDITLVDQSQASVTMT 619
FV + + + + IDVL V A + + V K KT KRD+TLVD S V +T
Sbjct: 121 DFVKISALEQADEGQVIDVLAVVKTAEDCAEVVSQKLGGKTLTKRDVTLVDASGVDVRLT 180
Query: 620 LWGKEAETFDASNKPVIAVKA--------------------------------------- 640
LWG+ A+ + PV+A+K
Sbjct: 181 LWGERAKQDQFAAAPVVALKGVKVSEYQGTKSLGFLRSSRVAFEPEDAAGYEELKAWWAN 240
Query: 641 ----------ARVSEFQGNL-----LLMREIQD----QQLGMGDKADYCSVRGIIQVFRG 681
+RVS G L R +QD + G GDK DY + + + +
Sbjct: 241 GGASAASTSLSRVSNAGGGLKGEKFADRRGLQDLKDDARFGQGDKPDYATFKATLMKVKE 300
Query: 682 SNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQ 741
Y++C C KKV +G Y CEKC R I+ D + S WV+ F
Sbjct: 301 DRLWYESC-GDGCQKKVTQGTDGTYSCEKCGTTKEECERRYIVSCCFVDASGSSWVSAF- 358
Query: 742 NEAESIL 748
N+A +L
Sbjct: 359 NDAGLVL 365
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 144/288 (50%), Gaps = 11/288 (3%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPC-NEDEVG-NMPSVKYCFVPLKTIAEISPDENIDV 62
P+N ++S+ YE++F ++ + C + +G + KY FV + + + + IDV
Sbjct: 80 PSNPRYSATKCGYEVTFDMASKIEACADASGIGLCIGGTKYDFVKISALEQADEGQVIDV 139
Query: 63 LGVCIDAAELSSVTG-KTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAV 121
L V A + + V K KT KRD+TLVD S V +TLWG+ A+ + PV+A+
Sbjct: 140 LAVVKTAEDCAEVVSQKLGGKTLTKRDVTLVDASGVDVRLTLWGERAKQDQFAAAPVVAL 199
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNP-DIPECHKLQGWF----STQTNTRFEPVSQRTGG 176
K +VSE+QG K+L SS ++ P D +L+ W+ ++ +T VS GG
Sbjct: 200 KGVKVSEYQGTKSLGFLRSSRVAFEPEDAAGYEELKAWWANGGASAASTSLSRVSNAGGG 259
Query: 177 MGGGAAGNLLLMREIQDQ-QLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVID 235
+ G + +++++D + G GDK DY + + + + Y++C C KKV
Sbjct: 260 LKGEKFADRRGLQDLKDDARFGQGDKPDYATFKATLMKVKEDRLWYESC-GDGCQKKVTQ 318
Query: 236 QNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL 283
+G Y CEKC R I+ D + S WV+ F N+A +L
Sbjct: 319 GTDGTYSCEKCGTTKEECERRYIVSCCFVDASGSSWVSAF-NDAGLVL 365
>gi|157871830|ref|XP_001684464.1| putative replication factor A, 51kDa subunit [Leishmania major
strain Friedlin]
gi|68127533|emb|CAJ05550.1| putative replication factor A, 51kDa subunit [Leishmania major
strain Friedlin]
Length = 467
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 122/407 (29%), Positives = 186/407 (45%), Gaps = 69/407 (16%)
Query: 441 QTHPIVSLSPY-QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE 499
Q PI SL+P+ KW I+ARVT+KT IR WN GKLFS L+DES IRAT+FND
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKTDIRTWNKPTSQGKLFSFTLIDESAAIRATVFNDA 67
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSV 558
+ F +I +VYY S +K AN++FS++NNDYE++F S+ ++ +D +P
Sbjct: 68 VDTFEPLIVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPMQ 127
Query: 559 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM 618
+Y FVP++ + + +DVLGV + E+SS+T K+ + MKR++ + D + A+V +
Sbjct: 128 RYNFVPIELLKQREVGSLVDVLGVVLKVDEVSSITQKSTGRELMKRNVKMGDMT-AAVEV 186
Query: 619 TLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQV 678
T W EA+ + V+A++ +V F G L + D D +
Sbjct: 187 TFWNDEAKAWCYPVGTVVALRQLKVGSFDGVTLSSTYQTKIDINPTDLPDVKKLATWYVA 246
Query: 679 FRGSNTTYKACPSQ------------DCNKKVID--QNNGMYR----------------- 707
G+N T + SQ D +K +D Q+ G+ R
Sbjct: 247 TGGANVT--SLSSQGLGAASGAGGESDRGRKYLDEIQSEGIGRGLKPEYVDVRCVPIYFK 304
Query: 708 --------CEKCNKEFN------------------TFTYRLILPVMIGDWTNSVWVTLFQ 741
C CNK+ T T R ++ + + D + W+TLF
Sbjct: 305 QDAQWYDACPTCNKKVTEEGAQGDRFRCEKCDKTVTPTQRYLVSIQVTDNVSQAWLTLFN 364
Query: 742 NEAESILGVTAQEVGESTEDHPALKKALFTQ------YIFRLRAKLE 782
G+ A E+ ++ P L A Q + RLR K E
Sbjct: 365 EAGIEFFGMEAAELKRRAQEDP-LYIAKLAQGRMNRPVVMRLRVKEE 410
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 167/326 (51%), Gaps = 20/326 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
AN++FS++NNDYE++F S+ ++ +D +P +Y FVP++ + + +DVLG
Sbjct: 91 ANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPMQRYNFVPIELLKQREVGSLVDVLG 150
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V + E+SS+T K+ + MKR++ + D + A+V +T W EA+ + V+A++
Sbjct: 151 VVLKVDEVSSITQKSTGRELMKRNVKMGDMT-AAVEVTFWNDEAKAWCYPVGTVVALRQL 209
Query: 125 RVSEFQGGKTLSLSMSSVLSLNP-DIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAG 183
+V F G TLS + + + +NP D+P+ KL W+ +S + G GA G
Sbjct: 210 KVGSFD-GVTLSSTYQTKIDINPTDLPDVKKLATWYVATGGANVTSLSSQGLGAASGAGG 268
Query: 184 ----NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ--N 237
+ EIQ + +G G K +Y VR + F+ Y ACP+ CNKKV ++
Sbjct: 269 ESDRGRKYLDEIQSEGIGRGLKPEYVDVRCVPIYFKQDAQWYDACPT--CNKKVTEEGAQ 326
Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH 297
+RCEKC+K T T R ++ + + D + W+TLF G+ A E+ ++
Sbjct: 327 GDRFRCEKCDKTV-TPTQRYLVSIQVTDNVSQAWLTLFNEAGIEFFGMEAAELKRRAQED 385
Query: 298 PALKKALFTQ------YIFRLRAKLE 317
P L A Q + RLR K E
Sbjct: 386 P-LYIAKLAQGRMNRPVVMRLRVKEE 410
>gi|398018224|ref|XP_003862293.1| replication factor A, 51kDa subunit, putative [Leishmania donovani]
gi|322500522|emb|CBZ35599.1| replication factor A, 51kDa subunit, putative [Leishmania donovani]
Length = 467
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 121/407 (29%), Positives = 186/407 (45%), Gaps = 69/407 (16%)
Query: 441 QTHPIVSLSPY-QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE 499
Q PI SL+P+ KW I+ARVT+KT IR WN GKLFS L+DES IRAT+FND
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKTDIRTWNKPTSQGKLFSFTLIDESAAIRATVFNDA 67
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSV 558
+ F +I +VYY S +K AN++FS++NNDYE++F S+ ++ +D +P
Sbjct: 68 VDTFEPLIVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPMQ 127
Query: 559 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM 618
+Y FVP++ + + +DVLGV + E+SS+T K+ + +KR++ + D + A+V +
Sbjct: 128 RYNFVPIELLKQREVGSLVDVLGVVLKVDEVSSITQKSTGRELVKRNVKMGDMT-AAVEV 186
Query: 619 TLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQV 678
T W EA+ + V+A++ +V F G L + D D +
Sbjct: 187 TFWNDEAKAWCYPVGTVVALRQLKVGSFDGVTLSSTYQTKIDINPTDLPDVKKLAAWYVT 246
Query: 679 FRGSNTTYKACPSQ------------DCNKKVID--QNNGMYR----------------- 707
G+N T + SQ D +K +D Q+ G+ R
Sbjct: 247 TGGANVT--SLSSQGLGAASGAGGESDRGRKYLDEIQSEGIGRGLKPEYVDVRCVPIYFK 304
Query: 708 --------CEKCNKEFN------------------TFTYRLILPVMIGDWTNSVWVTLFQ 741
C CNK+ T T R ++ + + D + W+TLF
Sbjct: 305 QDAQWYDACPTCNKKVTEEGAQGDRFRCEKCDKTVTPTQRYLVSIQVTDNVSQAWLTLFN 364
Query: 742 NEAESILGVTAQEVGESTEDHPALKKALFTQ------YIFRLRAKLE 782
G+ A E+ ++ P L A Q + RLR K E
Sbjct: 365 EAGIEFFGMEAAELKRRAQEDP-LYIAKLAQGRMNRPVVMRLRVKEE 410
Score = 150 bits (378), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 168/326 (51%), Gaps = 20/326 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
AN++FS++NNDYE++F S+ ++ +D +P +Y FVP++ + + +DVLG
Sbjct: 91 ANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPMQRYNFVPIELLKQREVGSLVDVLG 150
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V + E+SS+T K+ + +KR++ + D + A+V +T W EA+ + V+A++
Sbjct: 151 VVLKVDEVSSITQKSTGRELVKRNVKMGDMT-AAVEVTFWNDEAKAWCYPVGTVVALRQL 209
Query: 125 RVSEFQGGKTLSLSMSSVLSLNP-DIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAG 183
+V F G TLS + + + +NP D+P+ KL W+ T +S + G GA G
Sbjct: 210 KVGSFD-GVTLSSTYQTKIDINPTDLPDVKKLAAWYVTTGGANVTSLSSQGLGAASGAGG 268
Query: 184 ----NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ--N 237
+ EIQ + +G G K +Y VR + F+ Y ACP+ CNKKV ++
Sbjct: 269 ESDRGRKYLDEIQSEGIGRGLKPEYVDVRCVPIYFKQDAQWYDACPT--CNKKVTEEGAQ 326
Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH 297
+RCEKC+K T T R ++ + + D + W+TLF G+ A E+ ++
Sbjct: 327 GDRFRCEKCDKTV-TPTQRYLVSIQVTDNVSQAWLTLFNEAGIEFFGMEAAELKRRAQED 385
Query: 298 PALKKALFTQ------YIFRLRAKLE 317
P L A Q + RLR K E
Sbjct: 386 P-LYIAKLAQGRMNRPVVMRLRVKEE 410
>gi|397580873|gb|EJK51733.1| hypothetical protein THAOC_29071 [Thalassiosira oceanica]
Length = 438
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/409 (26%), Positives = 192/409 (46%), Gaps = 83/409 (20%)
Query: 451 YQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNRFHDMIEK 509
Y N+W I+A+V +K+ +R W+NA+G G+LFS+++LD +G +++ T F + ++F++ IE+
Sbjct: 2 YSNRWVIRAKVVSKSGVRTWSNAKGEGQLFSMEILDSAGTDVKCTFFKEAVDKFYNFIEE 61
Query: 510 DKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK--YCFVPLKT 567
D+VY S LK AN +++ + +E++F ++T+ E + G ++ Y FV +
Sbjct: 62 DRVYTFSGGRLKVANMQYNKCKSQFEITFDQNSTI----ELDQGGGDDIRASYDFVKVAD 117
Query: 568 IAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----K 623
+ P++ ID+LGV E +++ K + K K ++T+ D S A +T+T+WG K
Sbjct: 118 VERSQPNDYIDILGVVKAVGEPATIVSKKSGKELTKCELTVEDDSGAEITLTMWGDTANK 177
Query: 624 EAETFDASNKPVIAVKAARVSEFQGNLLL------------------------------- 652
E F + PV+A K ARVS++ G L
Sbjct: 178 ARERFGGT--PVVAFKRARVSDYGGRTLSGSGFSVNPNIPQAAALSQWWAANGGKSASRS 235
Query: 653 ----------------MRE----IQDQQLGMGDKADYCSVRGIIQVFR-----GSNTTYK 687
MR+ I+ QLG +K DY S + I + Y
Sbjct: 236 LSSGGMGGNRGPDPFEMRKAVNSIKSDQLGYNEKPDYLSFKATITFLKKDKQGDEGAWYT 295
Query: 688 ACP--SQDCNK--KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNE 743
AC C K ++G + C+KC + R I + D T++ W+++F +
Sbjct: 296 ACANGGDPCKNMYKATQTSDGNWHCDKCQQTLPDCVRRFIFSGTVADDTSTSWISVFNQQ 355
Query: 744 AESILG----------VTAQEVGESTEDHPALKKALFTQYIFRLRAKLE 782
AE +LG +T+ + G A +A ++++IF+ + + E
Sbjct: 356 AEELLGGATADDLYDKITSGDGGGRDVYDSAFARATYSEWIFKCKVRQE 404
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/349 (27%), Positives = 168/349 (48%), Gaps = 40/349 (11%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK--YCFVPLKTIAEISPDENIDVL 63
AN +++ + +E++F ++T+ E + G ++ Y FV + + P++ ID+L
Sbjct: 75 ANMQYNKCKSQFEITFDQNSTI----ELDQGGGDDIRASYDFVKVADVERSQPNDYIDIL 130
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEAETFDASNKPVI 119
GV E +++ K + K K ++T+ D S A +T+T+WG K E F + PV+
Sbjct: 131 GVVKAVGEPATIVSKKSGKELTKCELTVEDDSGAEITLTMWGDTANKARERFGGT--PVV 188
Query: 120 AVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGG 179
A K ARVS++ GG+TLS S S+NP+IP+ L W++ + S +GGMGG
Sbjct: 189 AFKRARVSDY-GGRTLS---GSGFSVNPNIPQAAALSQWWAA-NGGKSASRSLSSGGMGG 243
Query: 180 GAAGNLLLMRE----IQDQQLGMGDKADYCSVRGIIQVFR-----GSNTTYKACP--SQD 228
+ MR+ I+ QLG +K DY S + I + Y AC
Sbjct: 244 NRGPDPFEMRKAVNSIKSDQLGYNEKPDYLSFKATITFLKKDKQGDEGAWYTACANGGDP 303
Query: 229 CNK--KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILG-- 284
C K ++G + C+KC + R I + D T++ W+++F +AE +LG
Sbjct: 304 CKNMYKATQTSDGNWHCDKCQQTLPDCVRRFIFSGTVADDTSTSWISVFNQQAEELLGGA 363
Query: 285 --------VTAQEVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
+T+ + G A +A ++++IF+ + + E ++I
Sbjct: 364 TADDLYDKITSGDGGGRDVYDSAFARATYSEWIFKCKVRQEMVGDEQRI 412
>gi|146092153|ref|XP_001470220.1| putative replication factor A, 51kDa subunit [Leishmania infantum
JPCM5]
gi|134085014|emb|CAM69415.1| putative replication factor A, 51kDa subunit [Leishmania infantum
JPCM5]
Length = 467
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 121/407 (29%), Positives = 186/407 (45%), Gaps = 69/407 (16%)
Query: 441 QTHPIVSLSPY-QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE 499
Q PI SL+P+ KW I+ARVT+KT IR WN GKLFS L+DES IRAT+FND
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKTDIRTWNKPTSQGKLFSFTLIDESAAIRATVFNDA 67
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSV 558
+ F +I +VYY S +K AN++FS++NNDYE++F S+ ++ +D +P
Sbjct: 68 VDTFEPLIVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPMQ 127
Query: 559 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM 618
+Y FVP++ + + +DVLGV + E+SS+T K+ + +KR++ + D + A+V +
Sbjct: 128 RYNFVPIELLKQREVGSLVDVLGVVLKVDEVSSITQKSTGRELVKRNVKMGDMT-AAVEV 186
Query: 619 TLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQV 678
T W EA+ + V+A++ +V F G L + D D +
Sbjct: 187 TFWNDEAKAWCYPVGTVVALRQLKVGSFDGVTLSSTYQTKIDINPTDLPDVKKLATWYVT 246
Query: 679 FRGSNTTYKACPSQ------------DCNKKVID--QNNGMYR----------------- 707
G+N T + SQ D +K +D Q+ G+ R
Sbjct: 247 TGGANVT--SLSSQGLGAASGAGGESDRGRKYLDEIQSEGIGRGLKPEYVDVRCVPIYFK 304
Query: 708 --------CEKCNKEFN------------------TFTYRLILPVMIGDWTNSVWVTLFQ 741
C CNK+ T T R ++ + + D + W+TLF
Sbjct: 305 QDAQWYDACPTCNKKVTEEGAQGDRFRCEKCDKTVTPTQRYLVSIQVTDNVSQAWLTLFN 364
Query: 742 NEAESILGVTAQEVGESTEDHPALKKALFTQ------YIFRLRAKLE 782
G+ A E+ ++ P L A Q + RLR K E
Sbjct: 365 EAGIEFFGMEAAELKRRAQEDP-LYIAKLAQGRMNRPVVMRLRVKEE 410
Score = 149 bits (375), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 168/326 (51%), Gaps = 20/326 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
AN++FS++NNDYE++F S+ ++ +D +P +Y FVP++ + + +DVLG
Sbjct: 91 ANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPMQRYNFVPIELLKQREVGSLVDVLG 150
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V + E+SS+T K+ + +KR++ + D + A+V +T W EA+ + V+A++
Sbjct: 151 VVLKVDEVSSITQKSTGRELVKRNVKMGDMT-AAVEVTFWNDEAKAWCYPVGTVVALRQL 209
Query: 125 RVSEFQGGKTLSLSMSSVLSLNP-DIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAG 183
+V F G TLS + + + +NP D+P+ KL W+ T +S + G GA G
Sbjct: 210 KVGSFD-GVTLSSTYQTKIDINPTDLPDVKKLATWYVTTGGANVTSLSSQGLGAASGAGG 268
Query: 184 ----NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ--N 237
+ EIQ + +G G K +Y VR + F+ Y ACP+ CNKKV ++
Sbjct: 269 ESDRGRKYLDEIQSEGIGRGLKPEYVDVRCVPIYFKQDAQWYDACPT--CNKKVTEEGAQ 326
Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH 297
+RCEKC+K T T R ++ + + D + W+TLF G+ A E+ ++
Sbjct: 327 GDRFRCEKCDKTV-TPTQRYLVSIQVTDNVSQAWLTLFNEAGIEFFGMEAAELKRRAQED 385
Query: 298 PALKKALFTQ------YIFRLRAKLE 317
P L A Q + RLR K E
Sbjct: 386 P-LYIAKLAQGRMNRPVVMRLRVKEE 410
>gi|156089527|ref|XP_001612170.1| replication factor-a protein 1 (rpa1) family protein [Babesia
bovis]
gi|154799424|gb|EDO08602.1| replication factor-a protein 1 (rpa1) family protein [Babesia
bovis]
Length = 684
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 135/210 (64%), Gaps = 5/210 (2%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
I L+ Y KW+I+ARV NKT I+++NN G G+LFS+DL D SG+IRAT+F + +++
Sbjct: 247 IADLTIYTPKWSIRARVLNKTHIKKFNNQWGEGQLFSVDLCDNSGDIRATLFGEAVTKWY 306
Query: 505 DMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP 564
+ IE+ +VY IS L+PANKKF+S+++ EMS ++ ++ +D+ ++P ++ FVP
Sbjct: 307 NFIEEGQVYSISGGQLRPANKKFNSLSHACEMSLDENSQILLDRDDQ--SIPLIRCNFVP 364
Query: 565 LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE 624
+K + +S + IDV+GV ++ S K+ T KR+I L D S +SV +TLW K+
Sbjct: 365 IKQVERLSSGDIIDVIGVVARFNDIKSYQSKSTGTTSDKREILLCDSSGSSVWVTLWNKK 424
Query: 625 AETFDAS---NKPVIAVKAARVSEFQGNLL 651
+ F S P+IA+K RV+E+QG L
Sbjct: 425 VQQFLTSELETHPIIAMKGVRVNEWQGKKL 454
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/351 (27%), Positives = 175/351 (49%), Gaps = 50/351 (14%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANKKF+S+++ EMS ++ ++ +D+ ++P ++ FVP+K + +S + IDV+G
Sbjct: 324 PANKKFNSLSHACEMSLDENSQILLDRDDQ--SIPLIRCNFVPIKQVERLSSGDIIDVIG 381
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS---NKPVIAV 121
V ++ S K+ T KR+I L D S +SV +TLW K+ + F S P+IA+
Sbjct: 382 VVARFNDIKSYQSKSTGTTSDKREILLCDSSGSSVWVTLWNKKVQQFLTSELETHPIIAM 441
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGG 180
K RV+E+QG K ++ + + ++NP +PE KL+ W++T+ + +F+
Sbjct: 442 KGVRVNEWQGKKLDTIGTTHI-TINPAVPEVAKLKNWWATEGSQMQFD------------ 488
Query: 181 AAGNLLLMREIQD---------------QQLGMGDKADYCSVRGIIQVFRGSNTTYKACP 225
AG + I+D Q +GD + RG+++V R + ++ AC
Sbjct: 489 -AGRSSIDNNIEDIISIGALTQAANQAYQFKALGDSGITFTARGMVEVIRENTFSWPAC- 546
Query: 226 SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL-G 284
+C +K++++ G + C +C K + IL + I D T +W T + I+ G
Sbjct: 547 -IECQRKMVNE-LGQWVCSRC-KCTRQPRHTYILSMKISDDTGHLWATASSIVGDEIMNG 603
Query: 285 VTAQEVGESTEDHP----------ALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A EV ++ ++A T+YIF+++ E Y +I
Sbjct: 604 IPAAEVLALAGNNDINVDGKNFMNIFEEARLTEYIFKIKVYTETYMDEPRI 654
>gi|2833320|sp|Q23696.1|RFA1_CRIFA RecName: Full=Replication factor A 51 kDa subunit; AltName:
Full=RP-A p51; AltName: Full=Replication factor-A
protein 1; Short=RF-A protein 1; AltName:
Full=Single-stranded DNA-binding protein P51 subunit
gi|413772|emb|CAA80682.1| replication protein A 51 kilodalton subunit [Crithidia fasciculata]
Length = 467
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 129/213 (60%), Gaps = 3/213 (1%)
Query: 441 QTHPIVSLSPY-QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE 499
Q PI SL+P+ KW I+ARV +K+ IR WN GKLFS L+DES IRAT+FND
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVADKSDIRTWNKPTSQGKLFSFTLIDESAAIRATVFNDA 67
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSV 558
+ F ++ +VYY S +K AN++FS++NNDYE++F ++ VI +D +P
Sbjct: 68 VDTFEPLVVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRASEVILARQDSSAAALPMQ 127
Query: 559 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM 618
+Y FVP++ + + +DVLGV + E+SS+T K+ + +KR++ + D S A+V +
Sbjct: 128 RYNFVPIELLKQREVGSLVDVLGVVLKVDEISSITQKSTGRELIKRNVKIGDMS-AAVEV 186
Query: 619 TLWGKEAETFDASNKPVIAVKAARVSEFQGNLL 651
T W EA+ ++ V+A++ +V F G L
Sbjct: 187 TFWNDEAKAWNYPVGTVVALRQLKVGSFDGVTL 219
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 103/325 (31%), Positives = 170/325 (52%), Gaps = 18/325 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDE-VGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
AN++FS++NNDYE++F ++ VI +D +P +Y FVP++ + + +DVLG
Sbjct: 91 ANRRFSNVNNDYELTFDRASEVILARQDSSAAALPMQRYNFVPIELLKQREVGSLVDVLG 150
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V + E+SS+T K+ + +KR++ + D S A+V +T W EA+ ++ V+A++
Sbjct: 151 VVLKVDEISSITQKSTGRELIKRNVKIGDMS-AAVEVTFWNDEAKAWNYPVGTVVALRQL 209
Query: 125 RVSEFQGGKTLSLSMSSVLSLNP-DIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAG 183
+V F G TLS + + + +NP D+P+ KL W+ + +S + G GGG G
Sbjct: 210 KVGSFD-GVTLSSTYQTKIDVNPADLPDVKKLATWYVSTGGANVVSLSSQGLGAGGGGGG 268
Query: 184 NLLLMR----EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ--N 237
R EIQ + +G G K +Y VR + F+ Y ACP+ CNKKV ++
Sbjct: 269 EGNRGRKYLDEIQSEGIGRGAKPEYVDVRCVPIYFKQDAQWYDACPT--CNKKVTEEGAQ 326
Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH 297
+RCEKC+ T R ++ + + D + VW+TLF G+ A E+ ++
Sbjct: 327 GDRFRCEKCDATV-VPTQRYLVSIQVTDNVSQVWLTLFNEAGVEFFGMEASELKRRAQED 385
Query: 298 P----ALKKALFTQ-YIFRLRAKLE 317
P L +A + + RLR K E
Sbjct: 386 PLYIAKLAQARMNRPVVMRLRVKEE 410
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 10/137 (7%)
Query: 653 MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ--NNGMYRCEK 710
+ EIQ + +G G K +Y VR + F+ Y ACP+ CNKKV ++ +RCEK
Sbjct: 277 LDEIQSEGIGRGAKPEYVDVRCVPIYFKQDAQWYDACPT--CNKKVTEEGAQGDRFRCEK 334
Query: 711 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP----ALK 766
C+ T R ++ + + D + VW+TLF G+ A E+ ++ P L
Sbjct: 335 CDATV-VPTQRYLVSIQVTDNVSQVWLTLFNEAGVEFFGMEASELKRRAQEDPLYIAKLA 393
Query: 767 KALFTQ-YIFRLRAKLE 782
+A + + RLR K E
Sbjct: 394 QARMNRPVVMRLRVKEE 410
>gi|308502550|ref|XP_003113459.1| CRE-RPA-1 protein [Caenorhabditis remanei]
gi|308263418|gb|EFP07371.1| CRE-RPA-1 protein [Caenorhabditis remanei]
Length = 656
Score = 162 bits (410), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 121/407 (29%), Positives = 191/407 (46%), Gaps = 76/407 (18%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREW--NNARGSGKLFSIDLLDESGE-IRATMFNDEC 500
PI ++PY N + I V+ K IR + N R +F+ ++ D +G+ IR FN+
Sbjct: 223 PIAMVTPYVNNFKIHGMVSRKEDIRTFPAKNTR----VFNFEVTDTNGDTIRCCAFNEAA 278
Query: 501 NRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKY 560
F MI ++ YYI+ +++ ANK++++ +DYE++ S +VI E+ P +
Sbjct: 279 ESFFGMITENLSYYIAGGSVRQANKRYNNTGHDYEITL-RSDSVIEAG-GELLAAPKLNL 336
Query: 561 CFVPLKTIAEISPDENIDVLGVCI----DAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
V L +A IDVL V + E +S GKT +KR++ L+D+S A V
Sbjct: 337 RRVRLSEVAGHCGGL-IDVLAVVDKMDDEPTEFTSRAGKT----LVKREMELIDESSAMV 391
Query: 617 TMTLWGKEAETFDAS--NKPVIAVKAARVSEFQGNLLL---------------------- 652
+TLWG+EA DA + V+A K EF G L
Sbjct: 392 RLTLWGEEATKADAQEYQQKVVAFKGVIPKEFNGGYTLGTGSGTRIILAPDIGGVADLYD 451
Query: 653 ---------------------------MREIQDQQLGM-GDKADYCSVRGIIQVFRGSNT 684
+ +Q+ Q G +K DY SV+ +I +N
Sbjct: 452 WYHNTKPSAEVKMISQTSGGSNDIPRTIAGLQEMQFGKDSEKGDYASVKAMITRINPNNA 511
Query: 685 TYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEA 744
YK C S+ C KKV+ + +G YRCEKCNK N F + ++ + D T V+VT F + A
Sbjct: 512 LYKGCASEGCQKKVV-ETDGEYRCEKCNKSMNKFKWLYMMQFELSDETGQVYVTAFGDTA 570
Query: 745 ESILGVTAQEVGESTEDHP-----ALKKALFTQYIFRLRAKLEHYNK 786
++G TA E+G+ E++P ++ F +++LR K+E YN+
Sbjct: 571 AKVVGKTAAEIGDLKEENPEEYNGVFERIQFAPKMWKLRCKMETYNE 617
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 115/366 (31%), Positives = 182/366 (49%), Gaps = 35/366 (9%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK++++ +DYE++ S +VI E+ P + V L +A IDVL V
Sbjct: 301 ANKRYNNTGHDYEITL-RSDSVIEAG-GELLAAPKLNLRRVRLSEVAGHCGGL-IDVLAV 357
Query: 66 CI----DAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS--NKPVI 119
+ E +S GKT +KR++ L+D+S A V +TLWG+EA DA + V+
Sbjct: 358 VDKMDDEPTEFTSRAGKT----LVKREMELIDESSAMVRLTLWGEEATKADAQEYQQKVV 413
Query: 120 AVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMG 178
A K EF GG TL + + L PDI L W+ +T+ + + +SQ +GG
Sbjct: 414 AFKGVIPKEFNGGYTLGTGSGTRIILAPDIGGVADLYDWYHNTKPSAEVKMISQTSGG-- 471
Query: 179 GGAAGNLLLMREIQDQQLGM-GDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQN 237
+ + +Q+ Q G +K DY SV+ +I +N YK C S+ C KKV+ +
Sbjct: 472 --SNDIPRTIAGLQEMQFGKDSEKGDYASVKAMITRINPNNALYKGCASEGCQKKVV-ET 528
Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH 297
+G YRCEKCNK N F + ++ + D T V+VT F + A ++G TA E+G+ E++
Sbjct: 529 DGEYRCEKCNKSMNKFKWLYMMQFELSDETGQVYVTAFGDTAAKVVGKTAAEIGDLKEEN 588
Query: 298 P-----ALKKALFTQYIFRLRAKLEHYN----------GTKKIPDGVNINSFAMLATQLN 342
P ++ F +++LR K+E YN G ++ I + L Q+
Sbjct: 589 PEEYNGVFERIQFAPKMWKLRCKMETYNEETRQKMTVFGVDEVNQDKYIENLKQLIEQMK 648
Query: 343 DIITDG 348
+I +G
Sbjct: 649 EIKDEG 654
>gi|401425076|ref|XP_003877023.1| putative replication factor A, 51kDa subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493267|emb|CBZ28552.1| putative replication factor A, 51kDa subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 467
Score = 162 bits (409), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 118/405 (29%), Positives = 184/405 (45%), Gaps = 65/405 (16%)
Query: 441 QTHPIVSLSPY-QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE 499
Q PI SL+P+ KW I+ARVT+KT +R WN GKLFS L+DES IRAT+FND
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKTDVRTWNKPTSQGKLFSFTLIDESAAIRATVFNDA 67
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSV 558
+ F +I +VYY S +K AN++FS++NNDYE++F S+ ++ +D +P
Sbjct: 68 VDTFEPLIVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPMQ 127
Query: 559 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM 618
+Y FVP++ + + +DVLGV + E+SS+T K+ + +KR++ + D + A+V +
Sbjct: 128 RYNFVPIELLKQREVGSLVDVLGVVLKVDEVSSITQKSTGRELVKRNVKMGDMT-AAVEV 186
Query: 619 TLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQV 678
T W EA+ + V+A++ +V F G L + D D +
Sbjct: 187 TFWNDEAKAWCYPVGTVVALRQLKVGSFDGVTLSSTYQTKIDINPTDLPDVKKLATWYVT 246
Query: 679 FRGSNT----------TYKACPSQDCNKKVID--QNNGMYR------------------- 707
G+N A D +K +D Q++G+ R
Sbjct: 247 TGGANVMSLSSQGLGAASGAGGESDRGRKYLDEIQSDGIGRGLKPEYVDVRCVPIYFKQD 306
Query: 708 ------CEKCNKEFN------------------TFTYRLILPVMIGDWTNSVWVTLFQNE 743
C CNK+ T T R ++ + + D + W+TLF
Sbjct: 307 AQWYDACPTCNKKVTEEGAQGDRFRCEKCDKTVTPTQRYLVSIQVTDNVSQAWLTLFNEA 366
Query: 744 AESILGVTAQEVGESTEDHPALKKALFTQ------YIFRLRAKLE 782
G+ A E+ ++ P L A Q + RLR K E
Sbjct: 367 GIEFFGMEAAELKRRAQEDP-LYIAKLAQGRMNRPVVMRLRVKEE 410
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 167/326 (51%), Gaps = 20/326 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
AN++FS++NNDYE++F S+ ++ +D +P +Y FVP++ + + +DVLG
Sbjct: 91 ANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPMQRYNFVPIELLKQREVGSLVDVLG 150
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V + E+SS+T K+ + +KR++ + D + A+V +T W EA+ + V+A++
Sbjct: 151 VVLKVDEVSSITQKSTGRELVKRNVKMGDMT-AAVEVTFWNDEAKAWCYPVGTVVALRQL 209
Query: 125 RVSEFQGGKTLSLSMSSVLSLNP-DIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAG 183
+V F G TLS + + + +NP D+P+ KL W+ T +S + G GA G
Sbjct: 210 KVGSFD-GVTLSSTYQTKIDINPTDLPDVKKLATWYVTTGGANVMSLSSQGLGAASGAGG 268
Query: 184 ----NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ--N 237
+ EIQ +G G K +Y VR + F+ Y ACP+ CNKKV ++
Sbjct: 269 ESDRGRKYLDEIQSDGIGRGLKPEYVDVRCVPIYFKQDAQWYDACPT--CNKKVTEEGAQ 326
Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH 297
+RCEKC+K T T R ++ + + D + W+TLF G+ A E+ ++
Sbjct: 327 GDRFRCEKCDKTV-TPTQRYLVSIQVTDNVSQAWLTLFNEAGIEFFGMEAAELKRRAQED 385
Query: 298 PALKKALFTQ------YIFRLRAKLE 317
P L A Q + RLR K E
Sbjct: 386 P-LYIAKLAQGRMNRPVVMRLRVKEE 410
>gi|40317150|gb|AAR84278.1| putative replication protein A subunit 1 [Leishmania amazonensis]
Length = 467
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 128/210 (60%), Gaps = 3/210 (1%)
Query: 441 QTHPIVSLSPY-QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE 499
Q PI SL+P+ KW I+ARVT+KT +R WN GKLFS L+DES IRAT+FND
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKTDVRTWNKPTSQGKLFSFTLIDESAAIRATVFNDA 67
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSV 558
+ F +I +VYY S +K AN++FS++NNDYE++F S+ ++ +D +P
Sbjct: 68 VDTFEPLIVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPMQ 127
Query: 559 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM 618
+Y FVP++ + + +DVLGV + E+SS+T K+ + +KR++ + D + A+V +
Sbjct: 128 RYNFVPIELLKQREVGSLVDVLGVVLKVDEVSSITQKSTGRELVKRNVKMGDMT-AAVEV 186
Query: 619 TLWGKEAETFDASNKPVIAVKAARVSEFQG 648
T W EA+ + V+A++ +V F G
Sbjct: 187 TFWNDEAKAWCYPVGTVVALRQLKVGSFHG 216
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 165/326 (50%), Gaps = 20/326 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
AN++FS++NNDYE++F S+ ++ +D +P +Y FVP++ + + +DVLG
Sbjct: 91 ANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPMQRYNFVPIELLKQREVGSLVDVLG 150
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V + E+SS+T K+ + +KR++ + D + A+V +T W EA+ + V+A++
Sbjct: 151 VVLKVDEVSSITQKSTGRELVKRNVKMGDMT-AAVEVTFWNDEAKAWCYPVGTVVALRQL 209
Query: 125 RVSEFQGGKTLSLSMSSVLSLNP-DIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAG 183
+V F G S + + + +NP D+P+ KL W+ T +S + G GA G
Sbjct: 210 KVGSFH-GVPFSSTYQTKIDINPTDLPDVKKLATWYVTTGGANVMSLSSQGLGAASGAGG 268
Query: 184 ----NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ--N 237
+ EIQ +G G K +Y VR + F+ Y ACP+ CNKKV ++
Sbjct: 269 ESDRGRKYLDEIQSDGIGRGLKPEYVDVRCVPIYFKQDAQWYDACPT--CNKKVTEEGAQ 326
Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH 297
+RCEKC+K T T R ++ + + D + W+TLF G+ A E+ ++
Sbjct: 327 GDRFRCEKCDKTV-TPTQRYLVSIQVTDNVSQAWLTLFNEAGIEFFGMEAAELKRRAQED 385
Query: 298 PALKKALFTQ------YIFRLRAKLE 317
P L A Q + RLR K E
Sbjct: 386 P-LYIAKLAQGRMNRPVVMRLRVKEE 410
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 12/138 (8%)
Query: 653 MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ--NNGMYRCEK 710
+ EIQ +G G K +Y VR + F+ Y ACP+ CNKKV ++ +RCEK
Sbjct: 277 LDEIQSDGIGRGLKPEYVDVRCVPIYFKQDAQWYDACPT--CNKKVTEEGAQGDRFRCEK 334
Query: 711 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALF 770
C+K T T R ++ + + D + W+TLF G+ A E+ ++ P L A
Sbjct: 335 CDKTV-TPTQRYLVSIQVTDNVSQAWLTLFNEAGIEFFGMEAAELKRRAQEDP-LYIAKL 392
Query: 771 TQ------YIFRLRAKLE 782
Q + RLR K E
Sbjct: 393 AQGRMNRPVVMRLRVKEE 410
>gi|407853189|gb|EKG06272.1| replication factor A, 51kDa subunit, putative [Trypanosoma cruzi]
Length = 465
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 114/394 (28%), Positives = 185/394 (46%), Gaps = 63/394 (15%)
Query: 441 QTHPIVSLSPY-QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE 499
Q PI SL+P+ KW I+ARVT+K+ +R WN GKLFS L+DES IRAT+FND
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKSDVRTWNKPTSQGKLFSFTLIDESASIRATVFNDA 67
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK 559
+ F+ +I +VYY+S +K AN+KFS++NNDYE++F S+ + + +P +
Sbjct: 68 VDLFNPLIVNGQVYYLSGGQVKNANRKFSNVNNDYELTFDSSSQISLARDPSSATIPLQR 127
Query: 560 YCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
Y FVP+ + + +DVL V + ELSS+T K+ + +KR++ + D + A+V +T
Sbjct: 128 YNFVPIAILKQREVGSLVDVLAVVLSVEELSSITQKSTGRELIKRNVKVGDIT-AAVEVT 186
Query: 620 LWGKEAETFDASNKPVIAVKAARVSEFQG---------------NLLLMREIQDQQLGMG 664
LW +A+ + S V+A++ +V F G N+ ++++ + + G
Sbjct: 187 LWNDQAKEWAYSPGTVLAMRQLKVGSFDGVTLSATFQSAFDVNPNIPDVKKLAEWYISTG 246
Query: 665 DKADYCSVRGIIQV---------FRG-------SNTTYKACPSQD-----CNKKVIDQNN 703
+ D S+ + +RG S P D C + Q+
Sbjct: 247 GR-DVSSLSSLGVGAGNNAGGENYRGRKYFDDISAEGLGRGPKADFIDVRCVPVYLKQDA 305
Query: 704 GMY-RCEKCNKEFN------------------TFTYRLILPVMIGDWTNSVWVTLFQNEA 744
Y C +CNK+ T R ++ + D + W+TLF
Sbjct: 306 QWYDACPQCNKKVTLEGAQGERYRCEKCDRQVVPTQRYLVSIQASDNVSQKWLTLFNEAG 365
Query: 745 ESILGVTAQEVGESTEDHPALKKALFTQYIFRLR 778
G+ A E+ + E P +F I +LR
Sbjct: 366 VEFFGMPATELKKQQEADP-----MFVTKIAQLR 394
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 159/314 (50%), Gaps = 16/314 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN+KFS++NNDYE++F S+ + + +P +Y FVP+ + + +DVL V
Sbjct: 91 ANRKFSNVNNDYELTFDSSSQISLARDPSSATIPLQRYNFVPIAILKQREVGSLVDVLAV 150
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ ELSS+T K+ + +KR++ + D + A+V +TLW +A+ + S V+A++ +
Sbjct: 151 VLSVEELSSITQKSTGRELIKRNVKVGDIT-AAVEVTLWNDQAKEWAYSPGTVLAMRQLK 209
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
V F G TLS + S +NP+IP+ KL W+ + +S G G A G
Sbjct: 210 VGSFD-GVTLSATFQSAFDVNPNIPDVKKLAEWYISTGGRDVSSLSSLGVGAGNNAGGEN 268
Query: 186 LLMR----EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKV-IDQNNG- 239
R +I + LG G KAD+ VR + + Y ACP CNKKV ++ G
Sbjct: 269 YRGRKYFDDISAEGLGRGPKADFIDVRCVPVYLKQDAQWYDACPQ--CNKKVTLEGAQGE 326
Query: 240 MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA 299
YRCEKC+++ T R ++ + D + W+TLF G+ A E+ + E P
Sbjct: 327 RYRCEKCDRQV-VPTQRYLVSIQASDNVSQKWLTLFNEAGVEFFGMPATELKKQQEADP- 384
Query: 300 LKKALFTQYIFRLR 313
+F I +LR
Sbjct: 385 ----MFVTKIAQLR 394
>gi|15148880|gb|AAK84867.1|AF399823_1 replication protein A subunit 1 [Leishmania infantum]
Length = 467
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 120/407 (29%), Positives = 185/407 (45%), Gaps = 69/407 (16%)
Query: 441 QTHPIVSLSPY-QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE 499
Q PI SL+P+ KW I+ARVT+KT IR WN GKLFS L+DES I A +FND
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKTDIRTWNKPTSQGKLFSFTLIDESAAIGANVFNDA 67
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSV 558
+ F +I +VYY S +K AN++FS++NNDYE++F S+ ++ +D +P
Sbjct: 68 VDTFEPLIVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPMQ 127
Query: 559 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM 618
+Y FVP++ + + +DVLGV + E+SS+T K+ + +KR++ + D + A+V +
Sbjct: 128 RYNFVPIELLKQREVGSLVDVLGVVLKVDEVSSITQKSKGRELVKRNVKMGDMT-AAVEV 186
Query: 619 TLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQV 678
T W EA+ + V+A++ +V F G L + D AD +
Sbjct: 187 TFWNDEAKAWCYPVGTVVALRQLKVGSFDGVTLSSTYKTKIDINPTDLADVKKLATWYVT 246
Query: 679 FRGSNTTYKACPSQ------------DCNKKVID--QNNGMYR----------------- 707
G+N T + SQ D +K +D Q+ G+ R
Sbjct: 247 TGGANVT--SLSSQGLGAASGAGGESDRGRKYLDEIQSEGIGRGLKPEYVDVRCVPIYFK 304
Query: 708 --------CEKCNKEFN------------------TFTYRLILPVMIGDWTNSVWVTLFQ 741
C CNK+ T T R ++ + + D + W+TLF
Sbjct: 305 QDAQWYDACPTCNKKVTEEGAQGDRFRCEKCDKTVTPTQRYLVSIQVTDNVSQAWLTLFN 364
Query: 742 NEAESILGVTAQEVGESTEDHPALKKALFTQ------YIFRLRAKLE 782
G+ A E+ ++ P L A Q + RLR K E
Sbjct: 365 EAGIEFFGMEAAELKRRAQEDP-LYIAKLAQGRMNRPVVMRLRVKEE 410
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 167/326 (51%), Gaps = 20/326 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
AN++FS++NNDYE++F S+ ++ +D +P +Y FVP++ + + +DVLG
Sbjct: 91 ANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPMQRYNFVPIELLKQREVGSLVDVLG 150
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V + E+SS+T K+ + +KR++ + D + A+V +T W EA+ + V+A++
Sbjct: 151 VVLKVDEVSSITQKSKGRELVKRNVKMGDMT-AAVEVTFWNDEAKAWCYPVGTVVALRQL 209
Query: 125 RVSEFQGGKTLSLSMSSVLSLNP-DIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAG 183
+V F G TLS + + + +NP D+ + KL W+ T +S + G GA G
Sbjct: 210 KVGSFD-GVTLSSTYKTKIDINPTDLADVKKLATWYVTTGGANVTSLSSQGLGAASGAGG 268
Query: 184 ----NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ--N 237
+ EIQ + +G G K +Y VR + F+ Y ACP+ CNKKV ++
Sbjct: 269 ESDRGRKYLDEIQSEGIGRGLKPEYVDVRCVPIYFKQDAQWYDACPT--CNKKVTEEGAQ 326
Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH 297
+RCEKC+K T T R ++ + + D + W+TLF G+ A E+ ++
Sbjct: 327 GDRFRCEKCDKTV-TPTQRYLVSIQVTDNVSQAWLTLFNEAGIEFFGMEAAELKRRAQED 385
Query: 298 PALKKALFTQ------YIFRLRAKLE 317
P L A Q + RLR K E
Sbjct: 386 P-LYIAKLAQGRMNRPVVMRLRVKEE 410
>gi|401410388|ref|XP_003884642.1| hypothetical protein NCLIV_050400 [Neospora caninum Liverpool]
gi|325119060|emb|CBZ54612.1| hypothetical protein NCLIV_050400 [Neospora caninum Liverpool]
Length = 919
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 111/414 (26%), Positives = 196/414 (47%), Gaps = 78/414 (18%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
P+ L+ Y KWTI+ARV K IR++N ARG G+LF+++L D+ GEIRAT FN +++
Sbjct: 468 PLKDLTAYVAKWTIRARVDVKGDIRKYNGARGPGQLFNVELKDKDGEIRATFFNSAVDKW 527
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVG-NMPSVKYC- 561
++++++ KVYY +KP N +F+ +DYE++F ++++ E E G ++PS+
Sbjct: 528 YNVLQEGKVYYFRGGLVKPKNPRFNHTRHDYELTFDEKSSIV---EAEPGADIPSISRAD 584
Query: 562 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
V ++ I E + + ++ + D + S+T K+ + KRD+ LVD+ S+ +TLW
Sbjct: 585 LVDIRGIEEKEVNSTVSLIAIVHDYRPIQSITIKSTGQQKPKRDVFLVDEGGRSLALTLW 644
Query: 622 GKEAETFDA---SNKPVIAVKAARVSEF-------QGNLLL--------MREIQD----- 658
G + ET S KP++ K+ +V ++ QGN + E+QD
Sbjct: 645 GDKTETIPEDQLSQKPIVLFKSVKVGDWNGKKLDSQGNTRIELFPDGNRSAELQDWWNRE 704
Query: 659 -QQLG------------------------------------MGDKADYCSVRGIIQVFRG 681
Q G + DK Y + +++
Sbjct: 705 GSQRGSFASISGGGGLGVGRKEILKSLEQVAQEAAQAEASVLSDKGVYATSCALLERIGD 764
Query: 682 SNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQ 741
++ ACP DC KK+ ++ G ++C C K+ + +L + + D T S+ +
Sbjct: 765 DRFSWPACP--DCRKKMSEEVTGCWQCPSCRKQCEQPNHTYMLNMSLMDLTGSLRCSCMG 822
Query: 742 NEAESILGVTAQEVGESTEDHPALKK-----------ALFTQYIFRLRAKLEHY 784
+AE +G T E +H AL + A ++IFR+ +K + +
Sbjct: 823 EKAEEFMGNTKAETVLLLAEHRALDEQGRSFQDIFADANLEEWIFRICSKYDSW 876
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 159/340 (46%), Gaps = 28/340 (8%)
Query: 2 LAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVG-NMPSVKYC-FVPLKTIAEISPDEN 59
L P N +F+ +DYE++F ++++ E E G ++PS+ V ++ I E +
Sbjct: 543 LVKPKNPRFNHTRHDYELTFDEKSSIV---EAEPGADIPSISRADLVDIRGIEEKEVNST 599
Query: 60 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA---SNK 116
+ ++ + D + S+T K+ + KRD+ LVD+ S+ +TLWG + ET S K
Sbjct: 600 VSLIAIVHDYRPIQSITIKSTGQQKPKRDVFLVDEGGRSLALTLWGDKTETIPEDQLSQK 659
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGG 176
P++ K+ +V ++ GK L ++ + L PD +LQ W++ + + R S GG
Sbjct: 660 PIVLFKSVKVGDWN-GKKLDSQGNTRIELFPDGNRSAELQDWWNREGSQRGSFASISGGG 718
Query: 177 MGGGAAGNLLLMREIQDQQLG------MGDKADYCSVRGIIQVFRGSNTTYKACPSQDCN 230
G +L E Q+ + DK Y + +++ ++ ACP DC
Sbjct: 719 GLGVGRKEILKSLEQVAQEAAQAEASVLSDKGVYATSCALLERIGDDRFSWPACP--DCR 776
Query: 231 KKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 290
KK+ ++ G ++C C K+ + +L + + D T S+ + +AE +G T E
Sbjct: 777 KKMSEEVTGCWQCPSCRKQCEQPNHTYMLNMSLMDLTGSLRCSCMGEKAEEFMGNTKAET 836
Query: 291 GESTEDHPALKK-----------ALFTQYIFRLRAKLEHY 319
+H AL + A ++IFR+ +K + +
Sbjct: 837 VLLLAEHRALDEQGRSFQDIFADANLEEWIFRICSKYDSW 876
>gi|342185999|emb|CCC95484.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 464
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/406 (28%), Positives = 191/406 (47%), Gaps = 63/406 (15%)
Query: 441 QTHPIVSLSPY-QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE 499
Q PI SL+P+ +KW I+ARVT+K+ +R WN GKLFS L+DES IRAT+FND
Sbjct: 8 QIQPIDSLTPFLGSKWWIRARVTDKSDVRTWNKPTSQGKLFSFTLIDESASIRATVFNDA 67
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK 559
+ F+ +I +VY+ S +K AN+KFS++NNDYE+SF S+ + + ++P +
Sbjct: 68 VDLFNPLIVNGQVYFFSGGQVKNANRKFSNVNNDYELSFDSSSQISIARDASSASIPLQR 127
Query: 560 YCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
Y FVP++ + + +DVL V + EL+++T K+ + +KR++ + D S A++ +T
Sbjct: 128 YNFVPIEILKQREVGSLVDVLAVILGVDELTTITQKSTGRDLIKRNVKVSD-STAAIDVT 186
Query: 620 LWGKEAETFDASNKPVIAVKAARVSEFQG---------------NLLLMREIQDQQLGMG 664
LW +A+ + V+A++ +V F G N+ ++++ + + G
Sbjct: 187 LWNDDAKQWMHQPGTVLAIRQLKVGSFDGVTLSATLQTSFDVNPNIPDVKKLSEWFISTG 246
Query: 665 DKA-DYCSVRGIIQVFRGSNT-----TYK-----------ACPSQD-----CNKKVIDQN 702
+ S +G + +N+ YK P D C + Q+
Sbjct: 247 GRGVASLSAQGTLAGAGAANSGEGYRGYKYFDDVAAEGLGRGPRPDYIDVRCVPVYLKQD 306
Query: 703 NGMY-RCEKCNKEFN------------------TFTYRLILPVMIGDWTNSVWVTLFQNE 743
Y C CNK+ T R I+ + + D + VW+TLF
Sbjct: 307 AQWYDACPNCNKKVTLEGALGDRYRCEKCDQTVVPTQRYIVSIQVTDNVSQVWLTLFNES 366
Query: 744 AESILGVTAQEVGESTEDHPAL-----KKALFTQYIFRLRAKLEHY 784
G+ A E+ + E+ + + + RLR K E Y
Sbjct: 367 GIDFFGMPASELKKRQEEDAMFVTKVAQMRMNRPVLMRLRVKDEPY 412
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 166/329 (50%), Gaps = 18/329 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN+KFS++NNDYE+SF S+ + + ++P +Y FVP++ + + +DVL V
Sbjct: 91 ANRKFSNVNNDYELSFDSSSQISIARDASSASIPLQRYNFVPIEILKQREVGSLVDVLAV 150
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ EL+++T K+ + +KR++ + D S A++ +TLW +A+ + V+A++ +
Sbjct: 151 ILGVDELTTITQKSTGRDLIKRNVKVSD-STAAIDVTLWNDDAKQWMHQPGTVLAIRQLK 209
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
V F G TLS ++ + +NP+IP+ KL WF + +S + G GAA +
Sbjct: 210 VGSFD-GVTLSATLQTSFDVNPNIPDVKKLSEWFISTGGRGVASLSAQGTLAGAGAANSG 268
Query: 186 LLMR------EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQN-- 237
R ++ + LG G + DY VR + + Y ACP +CNKKV +
Sbjct: 269 EGYRGYKYFDDVAAEGLGRGPRPDYIDVRCVPVYLKQDAQWYDACP--NCNKKVTLEGAL 326
Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH 297
YRCEKC++ T R I+ + + D + VW+TLF G+ A E+ + E+
Sbjct: 327 GDRYRCEKCDQTV-VPTQRYIVSIQVTDNVSQVWLTLFNESGIDFFGMPASELKKRQEED 385
Query: 298 PAL-----KKALFTQYIFRLRAKLEHYNG 321
+ + + RLR K E Y G
Sbjct: 386 AMFVTKVAQMRMNRPVLMRLRVKDEPYTG 414
>gi|407420060|gb|EKF38438.1| replication factor A, 51kDa subunit, putative [Trypanosoma cruzi
marinkellei]
Length = 465
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 129/212 (60%), Gaps = 2/212 (0%)
Query: 441 QTHPIVSLSPY-QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE 499
Q PI SL+P+ KW I+ARVT+K+ +R WN GKLFS L+DES IRAT+FND
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKSDVRTWNKPTSQGKLFSFTLIDESASIRATVFNDA 67
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK 559
+ F+ +I +VYY+S +K AN+KFS++NNDYE++F S+ + + +P +
Sbjct: 68 VDLFNPLIVNGQVYYLSGGQVKNANRKFSNVNNDYELTFDSSSQISLARDPSSATIPLQR 127
Query: 560 YCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
Y FVP+ + + +DVL V + ELSS+T K+ + +KR++ + D + A+V +T
Sbjct: 128 YNFVPIAILKQREVGSLVDVLAVVLSVEELSSITQKSTGRELVKRNVKVGDIT-AAVEVT 186
Query: 620 LWGKEAETFDASNKPVIAVKAARVSEFQGNLL 651
LW +A+ + S V+A++ +V F G L
Sbjct: 187 LWNDQAKEWTYSPGTVLAMRQLKVGSFDGVTL 218
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 105/370 (28%), Positives = 172/370 (46%), Gaps = 43/370 (11%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN+KFS++NNDYE++F S+ + + +P +Y FVP+ + + +DVL V
Sbjct: 91 ANRKFSNVNNDYELTFDSSSQISLARDPSSATIPLQRYNFVPIAILKQREVGSLVDVLAV 150
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ ELSS+T K+ + +KR++ + D + A+V +TLW +A+ + S V+A++ +
Sbjct: 151 VLSVEELSSITQKSTGRELVKRNVKVGDIT-AAVEVTLWNDQAKEWTYSPGTVLAMRQLK 209
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
V F G TLS + S +NP+IP+ KL W+ + TGG + +L
Sbjct: 210 VGSFD-GVTLSATFQSAFDVNPNIPDVKKLAEWYIS------------TGGRDVSSLSSL 256
Query: 186 L----------------LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDC 229
+I + LG G KAD+ VR + + Y ACP C
Sbjct: 257 GVGAGNNAGGENYRGRKYFDDISAEGLGRGPKADFIDVRCVPVYLKQDAQWYDACPQ--C 314
Query: 230 NKKV-IDQNNG-MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA 287
NKKV ++ G YRCEKC+++ T R ++ + D + W+TLF G+ A
Sbjct: 315 NKKVTLEGAQGERYRCEKCDRQV-VPTQRYLVSIQASDNVSQKWLTLFNEAGVEFFGMPA 373
Query: 288 QEVGESTEDHPALKKALFTQYI-----FRLRAKLEHYNGTKKIPDGVNINSFAMLATQLN 342
E+ + E P + + RLR K E + G + + +LN
Sbjct: 374 TELKKQQEADPMFVTKIAQMRMNRPVQMRLRVKEE---SSSSAAGGEESDRVRLTVMRLN 430
Query: 343 DIITDGTLSE 352
+ + T+SE
Sbjct: 431 EFMPLDTVSE 440
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKV-IDQNNG-MYRCEKCN 712
+I + LG G KAD+ VR + + Y ACP CNKKV ++ G YRCEKC+
Sbjct: 277 DISAEGLGRGPKADFIDVRCVPVYLKQDAQWYDACPQ--CNKKVTLEGAQGERYRCEKCD 334
Query: 713 KEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQ 772
++ T R ++ + D + W+TLF G+ A E+ + E P +F
Sbjct: 335 RQV-VPTQRYLVSIQASDNVSQKWLTLFNEAGVEFFGMPATELKKQQEADP-----MFVT 388
Query: 773 YIFRLR 778
I ++R
Sbjct: 389 KIAQMR 394
>gi|402471519|gb|EJW05236.1| replication factor-a protein 1 (rpa1) [Edhazardia aedis USNM 41457]
Length = 759
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 115/422 (27%), Positives = 208/422 (49%), Gaps = 55/422 (13%)
Query: 403 TNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVT 462
+N D+ QQ A N N NN+ + + V+ PI S++P+QNKW+IK R T
Sbjct: 320 SNKDSVYNQQKSVA---NIGNFQKNNLT---EENKKHVENTPIASINPFQNKWSIKGRCT 373
Query: 463 NKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKP 522
K+ I+++ NARG GKLF++++ DE+G I+ + F++ + F + E K + I+ +K
Sbjct: 374 YKSDIKKFTNARGEGKLFTVNISDETGTIKISAFSECVDMFFTIFENGKSFIITKGQVKM 433
Query: 523 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 582
ANKK+S+ +DYE+ ++ V P ++ P + FV + + IS + DV+GV
Sbjct: 434 ANKKYSTGTSDYEIYLDKNSEVTPIFDE---GAPRYFFNFVKINDL-NISLHQ-ADVIGV 488
Query: 583 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 642
+A S++T + K KRD ++D++ ++ +TLWG A+ VIA
Sbjct: 489 VKEAYPTSTITLRNTGKEQKKRDFVIIDET-GNIRLTLWGSGAD-LPLEVGDVIACNCLS 546
Query: 643 VSEFQG--------------------------------NLLLMREIQDQQLGMGD----K 666
+ E+ G N+ + ++ +Q+ + D +
Sbjct: 547 IREYNGIVLSQISPTQVHINPDLEECFLLKGWYENEGKNIKVHKKASEQRYLISDIIENE 606
Query: 667 ADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPV 726
+ S G + ++ Y+AC +C KKVID+ +YRCEKCNK F+ + + +
Sbjct: 607 MKWGSFIGTVLQINENSLYYQACI--ECKKKVIDEGEDVYRCEKCNKTFDQCIPKYTINL 664
Query: 727 MIGDWTNSVWVTLFQNEAESILGVTAQEV----GESTEDHPALKKALFTQYIFRLRAKLE 782
I D+T+S+ +F + + G++A+ + +S++ +K + +IF+ + E
Sbjct: 665 QIADFTSSIRAMVFDAQGDIFFGISAKHLVDLGQKSSQIDLIIKNSYLRDFIFKTSMRQE 724
Query: 783 HY 784
Y
Sbjct: 725 SY 726
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 156/320 (48%), Gaps = 29/320 (9%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANKK+S+ +DYE+ ++ V P ++ P + FV + + IS + DV+GV
Sbjct: 434 ANKKYSTGTSDYEIYLDKNSEVTPIFDE---GAPRYFFNFVKINDL-NISLHQ-ADVIGV 488
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+A S++T + K KRD ++D++ ++ +TLWG A+ VIA
Sbjct: 489 VKEAYPTSTITLRNTGKEQKKRDFVIIDET-GNIRLTLWGSGAD-LPLEVGDVIACNCLS 546
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
+ E+ G LS + + +NPD+ EC L+GW+ + + + A+
Sbjct: 547 IREY-NGIVLSQISPTQVHINPDLEECFLLKGWYENEG---------KNIKVHKKASEQR 596
Query: 186 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 245
L+ +I + ++ G S G + ++ Y+AC +C KKVID+ +YRCEK
Sbjct: 597 YLISDIIENEMKWG------SFIGTVLQINENSLYYQACI--ECKKKVIDEGEDVYRCEK 648
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV----GESTEDHPALK 301
CNK F+ + + + I D+T+S+ +F + + G++A+ + +S++ +K
Sbjct: 649 CNKTFDQCIPKYTINLQIADFTSSIRAMVFDAQGDIFFGISAKHLVDLGQKSSQIDLIIK 708
Query: 302 KALFTQYIFRLRAKLEHYNG 321
+ +IF+ + E Y G
Sbjct: 709 NSYLRDFIFKTSMRQESYQG 728
>gi|71664069|ref|XP_819019.1| replication factor A, 51kDa subunit [Trypanosoma cruzi strain CL
Brener]
gi|70884302|gb|EAN97168.1| replication factor A, 51kDa subunit, putative [Trypanosoma cruzi]
Length = 465
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 185/394 (46%), Gaps = 63/394 (15%)
Query: 441 QTHPIVSLSPY-QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE 499
Q PI SL+P+ KW I+ARVT+K+ +R WN GKLFS L+DES IRAT+FND
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKSDVRTWNKPTSQGKLFSFTLIDESASIRATVFNDA 67
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK 559
+ F+ +I +VYY+S +K AN+KFS++NNDYE++F S+ + + +P +
Sbjct: 68 VDLFNPLIVNGQVYYLSGGQVKNANRKFSNVNNDYELTFDSSSQISLARDPSSATIPLQR 127
Query: 560 YCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
Y F+P+ + + +DVL V + ELSS+T K+ + +KR++ + D + A+V +T
Sbjct: 128 YNFLPIAILKQREVGSLVDVLAVVLSVEELSSITQKSTGRELIKRNVKVGDIT-AAVEVT 186
Query: 620 LWGKEAETFDASNKPVIAVKAARVSEFQG---------------NLLLMREIQDQQLGMG 664
LW +A+ + S V+A++ +V F G N+ ++++ + + G
Sbjct: 187 LWNDQAKEWAYSPGTVLAMRQLKVGSFDGVTLSATFQSAFDVNPNIPDVKKLAEWYISTG 246
Query: 665 DKADYCSVRGIIQV---------FRG-------SNTTYKACPSQD-----CNKKVIDQNN 703
+ D S+ + +RG S P D C + Q+
Sbjct: 247 GR-DVSSLSSLGVGAGNNAGGENYRGRKYFDDISAEGLGRGPKADFIDVRCVPVYLKQDA 305
Query: 704 GMY-RCEKCNKEFN------------------TFTYRLILPVMIGDWTNSVWVTLFQNEA 744
Y C +CNK+ T R ++ + D + W+TLF
Sbjct: 306 QWYDACPQCNKKVTLEGAQGERYRCEKCDRQVVPTQRYLVSIQASDNVSQKWLTLFNEAG 365
Query: 745 ESILGVTAQEVGESTEDHPALKKALFTQYIFRLR 778
G+ A E+ + E P +F I +LR
Sbjct: 366 VEFFGMPATELKKQQEADP-----MFVTKIAQLR 394
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/314 (31%), Positives = 159/314 (50%), Gaps = 16/314 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN+KFS++NNDYE++F S+ + + +P +Y F+P+ + + +DVL V
Sbjct: 91 ANRKFSNVNNDYELTFDSSSQISLARDPSSATIPLQRYNFLPIAILKQREVGSLVDVLAV 150
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ ELSS+T K+ + +KR++ + D + A+V +TLW +A+ + S V+A++ +
Sbjct: 151 VLSVEELSSITQKSTGRELIKRNVKVGDIT-AAVEVTLWNDQAKEWAYSPGTVLAMRQLK 209
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
V F G TLS + S +NP+IP+ KL W+ + +S G G A G
Sbjct: 210 VGSFD-GVTLSATFQSAFDVNPNIPDVKKLAEWYISTGGRDVSSLSSLGVGAGNNAGGEN 268
Query: 186 LLMR----EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKV-IDQNNG- 239
R +I + LG G KAD+ VR + + Y ACP CNKKV ++ G
Sbjct: 269 YRGRKYFDDISAEGLGRGPKADFIDVRCVPVYLKQDAQWYDACPQ--CNKKVTLEGAQGE 326
Query: 240 MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA 299
YRCEKC+++ T R ++ + D + W+TLF G+ A E+ + E P
Sbjct: 327 RYRCEKCDRQV-VPTQRYLVSIQASDNVSQKWLTLFNEAGVEFFGMPATELKKQQEADP- 384
Query: 300 LKKALFTQYIFRLR 313
+F I +LR
Sbjct: 385 ----MFVTKIAQLR 394
>gi|17533299|ref|NP_495606.1| Protein RPA-1 [Caenorhabditis elegans]
gi|2833300|sp|Q19537.1|RFA1_CAEEL RecName: Full=Probable replication factor A 73 kDa subunit;
AltName: Full=RP-A p73; AltName: Full=Replication factor
A protein 1; Short=RF-A protein 1
gi|351018137|emb|CCD62042.1| Protein RPA-1 [Caenorhabditis elegans]
Length = 655
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 127/423 (30%), Positives = 197/423 (46%), Gaps = 76/423 (17%)
Query: 430 AIP----RQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL 485
A+P R AS PI ++PY + + I V+ K IR + + K+F+ ++
Sbjct: 207 AVPPPARRTASNTERGVMPIAMVTPYVSNFKIHGMVSRKEEIRTF--PAKNTKVFNFEIT 264
Query: 486 DESGE-IRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTV 544
D +G+ IR T FN+ + I ++ YY+S ++K ANKKF++ +DYE++ S ++
Sbjct: 265 DSNGDTIRCTAFNEVAESLYTTITENLSYYLSGGSVKQANKKFNNTGHDYEITL-RSDSI 323
Query: 545 IPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVC----IDAAELSSVTGKTNQKT 600
I E+ P + V L IA + + IDVL V +A E +S GK+
Sbjct: 324 IEAG-GELLAAPKLILKRVKLGEIAGYA-GQLIDVLVVVEKMDPEATEFTSKAGKS---- 377
Query: 601 YMKRDITLVDQSQASVTMTLWGKEA--ETFDASNKPVIAVKAARVSEFQGNLLL------ 652
+KR++ L+D+S A V +TLWG EA D + VIA K EF G L
Sbjct: 378 LIKREMELIDESGALVRLTLWGDEATKALVDDYVQKVIAFKGVIPREFNGGFSLGTGSAT 437
Query: 653 -------------------------------------------MREIQDQQLGM-GDKAD 668
+ +Q+ Q G DK D
Sbjct: 438 RIISVPEIAGVSELYDWYANVKPTTEVKMMSQAAGGSNEAPRTIAGLQEMQFGKDSDKGD 497
Query: 669 YCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMI 728
Y +V+ +I +N Y+ C S+ C KK++ +N G YRCEKCNK N F + ++ +
Sbjct: 498 YATVKAMITRVNPTNALYRGCASEGCQKKLVGEN-GDYRCEKCNKNMNKFKWLYMMQFEL 556
Query: 729 GDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIF-----RLRAKLEH 783
D T V+VT F + A I+G +A E+GE ++ P A+F + F RLR K++
Sbjct: 557 SDETGQVYVTAFGDSAAKIVGKSAAELGELHDESPDEYNAIFERLQFVPKMWRLRCKMDS 616
Query: 784 YNK 786
YN+
Sbjct: 617 YNE 619
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 109/328 (33%), Positives = 168/328 (51%), Gaps = 25/328 (7%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANKKF++ +DYE++ S ++I E+ P + V L IA + + IDVL V
Sbjct: 303 ANKKFNNTGHDYEITL-RSDSIIEAG-GELLAAPKLILKRVKLGEIAGYA-GQLIDVLVV 359
Query: 66 C----IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA--ETFDASNKPVI 119
+A E +S GK+ +KR++ L+D+S A V +TLWG EA D + VI
Sbjct: 360 VEKMDPEATEFTSKAGKS----LIKREMELIDESGALVRLTLWGDEATKALVDDYVQKVI 415
Query: 120 AVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFS-TQTNTRFEPVSQRTGGMG 178
A K EF GG +L ++ + P+I +L W++ + T + +SQ GG
Sbjct: 416 AFKGVIPREFNGGFSLGTGSATRIISVPEIAGVSELYDWYANVKPTTEVKMMSQAAGGSN 475
Query: 179 GGAAGNLLLMREIQDQQLGM-GDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQN 237
+ +Q+ Q G DK DY +V+ +I +N Y+ C S+ C KK++ +N
Sbjct: 476 EAPR----TIAGLQEMQFGKDSDKGDYATVKAMITRVNPTNALYRGCASEGCQKKLVGEN 531
Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH 297
G YRCEKCNK N F + ++ + D T V+VT F + A I+G +A E+GE ++
Sbjct: 532 -GDYRCEKCNKNMNKFKWLYMMQFELSDETGQVYVTAFGDSAAKIVGKSAAELGELHDES 590
Query: 298 PALKKALFTQYIF-----RLRAKLEHYN 320
P A+F + F RLR K++ YN
Sbjct: 591 PDEYNAIFERLQFVPKMWRLRCKMDSYN 618
>gi|403370207|gb|EJY84965.1| hypothetical protein OXYTRI_17183 [Oxytricha trifallax]
Length = 684
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 117/415 (28%), Positives = 187/415 (45%), Gaps = 79/415 (19%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNR 502
PI L+ + W IKARV K +EW NA+G G L + DL+D G +I+AT F + ++
Sbjct: 240 PIRMLNNFTKDWKIKARVIQKGQKKEWRNAKGEGVLLNADLIDHEGTQIQATFFGEAAHK 299
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
+ M+ ++ VY SN +K ANKKF+SI ND+ ++F + + +D + S + F
Sbjct: 300 YDQMLHENHVYLFSNGQVKIANKKFTSIKNDHCLTFDQNAEISEVQDD--NQIKSQGFSF 357
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
V L+ I ++ + IDV+GV + + SS+ K+ Q +R+IT+ D+S+A ++++LWG
Sbjct: 358 VTLRNIEKVMAGQAIDVIGVITEISNTSSIPLKSGQNK-DRRNITIADESEAKISLSLWG 416
Query: 623 KEAETFDASNKPVIAVKAARVSEFQG---------------------------------- 648
+ V+AVK RVS++ G
Sbjct: 417 NLCTQYSYEEGQVMAVKNVRVSDYGGKSLNCGDDHSLIYLNPADKRTDQLMQWSQTGGAK 476
Query: 649 -------------------NLLLMREIQDQQLGM-GDKAD-----YCSVRGII-QVFRGS 682
N L+RE+ D L D+ D Y + G I ++
Sbjct: 477 KNLQNLSGGVGGGDSGSRDNYRLVREMSDTLLHENSDRNDKTAPQYFKLSGYISKILYDE 536
Query: 683 NTT--YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM--IGDWTNSVWVT 738
N + CP +C KK Q + Y CEKCNK N R+ V D ++ ++++
Sbjct: 537 NRMMYFPGCP--ECKKKCSPQGD-QYWCEKCNKALNHNQVRMTYTVTAKFDDLSDGIFIS 593
Query: 739 LFQNEAESILGVTAQEVGESTEDHP--------ALKKALFTQYIFRLRAKLEHYN 785
AE I+G+ A + ED L + F Y F ++A L+ YN
Sbjct: 594 FMSESAEPIMGMPASDFSRIREDQSNSLEFIRDLLNEKSFNYYTFVVKAALDDYN 648
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 100/336 (29%), Positives = 162/336 (48%), Gaps = 28/336 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANKKF+SI ND+ ++F + + +D + S + FV L+ I ++ + IDV+GV
Sbjct: 320 ANKKFTSIKNDHCLTFDQNAEISEVQDD--NQIKSQGFSFVTLRNIEKVMAGQAIDVIGV 377
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ + SS+ K+ Q +R+IT+ D+S+A ++++LWG + V+AVK R
Sbjct: 378 ITEISNTSSIPLKSGQNK-DRRNITIADESEAKISLSLWGNLCTQYSYEEGQVMAVKNVR 436
Query: 126 VSEFQGGKTLSLSMS-SVLSLNPDIPECHKLQGWFST-QTNTRFEPVSQRTGGMGGGAAG 183
VS++ GGK+L+ S++ LNP +L W T + +S GG G+
Sbjct: 437 VSDY-GGKSLNCGDDHSLIYLNPADKRTDQLMQWSQTGGAKKNLQNLSGGVGGGDSGSRD 495
Query: 184 NLLLMREIQDQQLGM-GDKAD-----YCSVRGII-QVFRGSNTT--YKACPSQDCNKKVI 234
N L+RE+ D L D+ D Y + G I ++ N + CP +C KK
Sbjct: 496 NYRLVREMSDTLLHENSDRNDKTAPQYFKLSGYISKILYDENRMMYFPGCP--ECKKKCS 553
Query: 235 DQNNGMYRCEKCNKEFNTFTYRLILPVM--IGDWTNSVWVTLFQNEAESILGVTAQEVGE 292
Q + Y CEKCNK N R+ V D ++ ++++ AE I+G+ A +
Sbjct: 554 PQGD-QYWCEKCNKALNHNQVRMTYTVTAKFDDLSDGIFISFMSESAEPIMGMPASDFSR 612
Query: 293 STEDHP--------ALKKALFTQYIFRLRAKLEHYN 320
ED L + F Y F ++A L+ YN
Sbjct: 613 IREDQSNSLEFIRDLLNEKSFNYYTFVVKAALDDYN 648
>gi|341897567|gb|EGT53502.1| hypothetical protein CAEBREN_14752 [Caenorhabditis brenneri]
Length = 658
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 130/470 (27%), Positives = 204/470 (43%), Gaps = 93/470 (19%)
Query: 398 PQPLNTNTDNSSTQQTPAATNT----NGSNGVHNNVAIP-------------RQASAPVV 440
P+ +TD P A +G HN A P R S
Sbjct: 162 PEAETFHTDIRENMSNPPAAKAQKRESGGEASHNRAAAPEPQRARPNPPPARRGPSNTER 221
Query: 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDE 499
PI ++PY N + I +T K IR + + K+F+ ++ D +G+ IR FN+
Sbjct: 222 GVMPIAMITPYVNGFKINGTITRKEEIRSF--PAKNTKVFNFEITDSNGDTIRCVAFNEL 279
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK 559
+ I ++ Y+ISN ++ ANK+F++ +DYE++ + + V + G++ +
Sbjct: 280 AESLYSTITENLSYFISNGQVRQANKRFNNTGHDYEINLRNDSIV-----EAGGDVVAAP 334
Query: 560 YCFVPLKTIAEISPD--ENIDVLGVC----IDAAELSSVTGKTNQKTYMKRDITLVDQSQ 613
+ ++ EI+ E IDVL + E +S GKT +KR++ L+D+S
Sbjct: 335 KLHLKRISLGEIAGHCGEMIDVLAYVEKMDPEPTEFTSKAGKT----LVKREMELIDESG 390
Query: 614 ASVTMTLWGKEAETFDASN--KPVIAVKAARVSEFQGNLLL------------------- 652
A V +TLWG+EA + V+A K EF G L
Sbjct: 391 AVVRLTLWGEEASKAPLEDYLHKVVAFKGVIPREFNGGYSLGTGFGSRVIAVPEISGVAE 450
Query: 653 ------------------------------MREIQDQQLGM-GDKADYCSVRGIIQVFRG 681
+ +Q+ Q G +K DY SV+ +I
Sbjct: 451 LYEWYNTVKPTVDVKMISQTSGSSSEAPRTIAGLQEMQFGKDSEKGDYVSVKAMITRINP 510
Query: 682 SNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQ 741
+N YK C S+ C KKVI +++G +RCEKCNK F + ++ + D T V+VT F
Sbjct: 511 NNALYKGCSSEGCQKKVI-ESDGDFRCEKCNKTMRHFKWLYMMQFELSDETGQVYVTAFG 569
Query: 742 NEAESILGVTAQEVGESTEDHPALKKALFTQYIF-----RLRAKLEHYNK 786
+ A ++G TA EVGE E +P A+F + F RLR K+E YN+
Sbjct: 570 DNATKVVGRTAAEVGELKEANPDEYNAVFEKLQFIPKMWRLRCKMETYNE 619
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 113/367 (30%), Positives = 178/367 (48%), Gaps = 37/367 (10%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPD--ENIDVL 63
ANK+F++ +DYE++ + + V + G++ + + ++ EI+ E IDVL
Sbjct: 303 ANKRFNNTGHDYEINLRNDSIV-----EAGGDVVAAPKLHLKRISLGEIAGHCGEMIDVL 357
Query: 64 GVC----IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN--KP 117
+ E +S GKT +KR++ L+D+S A V +TLWG+EA +
Sbjct: 358 AYVEKMDPEPTEFTSKAGKT----LVKREMELIDESGAVVRLTLWGEEASKAPLEDYLHK 413
Query: 118 VIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGM 177
V+A K EF GG +L S + P+I +L W++T T + +T G
Sbjct: 414 VVAFKGVIPREFNGGYSLGTGFGSRVIAVPEISGVAELYEWYNTVKPTVDVKMISQTSGS 473
Query: 178 GGGAAGNLLLMREIQDQQLGM-GDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 236
A + ++E+Q G +K DY SV+ +I +N YK C S+ C KKVI +
Sbjct: 474 SSEAPRTIAGLQEMQ---FGKDSEKGDYVSVKAMITRINPNNALYKGCSSEGCQKKVI-E 529
Query: 237 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 296
++G +RCEKCNK F + ++ + D T V+VT F + A ++G TA EVGE E
Sbjct: 530 SDGDFRCEKCNKTMRHFKWLYMMQFELSDETGQVYVTAFGDNATKVVGRTAAEVGELKEA 589
Query: 297 HPALKKALFTQYIF-----RLRAKLEHYN----------GTKKIPDGVNINSFAMLATQL 341
+P A+F + F RLR K+E YN G +++ I + L Q+
Sbjct: 590 NPDEYNAVFEKLQFIPKMWRLRCKMETYNEEVRQKMTVFGVEEVNQDKYIENLKQLIEQM 649
Query: 342 NDIITDG 348
I DG
Sbjct: 650 KSIEEDG 656
>gi|341899815|gb|EGT55750.1| CBN-RPA-1 protein [Caenorhabditis brenneri]
Length = 658
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 129/470 (27%), Positives = 205/470 (43%), Gaps = 93/470 (19%)
Query: 398 PQPLNTNTDNSSTQQTPAATNT----NGSNGVHNNVAIP-------------RQASAPVV 440
P+ + +TD P A +G HN A P R S
Sbjct: 162 PEAESFHTDIRENMSNPPAAKAQKRESGGEASHNRAAAPEPQRARPNPPPARRGPSNTER 221
Query: 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDE 499
PI ++PY N + I +T K IR + + K+F+ ++ D +G+ IR FN+
Sbjct: 222 GVMPIAMITPYVNGFKINGTITRKEEIRSF--PAKNTKVFNFEITDSNGDTIRCVAFNEL 279
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK 559
+ I ++ Y+I+N ++ ANK+F++ +DYE++ + + V + G++ +
Sbjct: 280 AESLYSTITENLSYFITNGQVRQANKRFNNTGHDYEINLRNDSIV-----EAGGDVVAAP 334
Query: 560 YCFVPLKTIAEISPD--ENIDVLGVC----IDAAELSSVTGKTNQKTYMKRDITLVDQSQ 613
+ ++ EI+ E IDVL + E +S GKT +KR++ L+D+S
Sbjct: 335 KLHLKRISLGEIAGHCGEMIDVLAYVEKMDPEPTEFTSKAGKT----LVKREMELIDESG 390
Query: 614 ASVTMTLWGKEAETFDASN--KPVIAVKAARVSEFQGNLLL------------------- 652
A V +TLWG+EA + V+A K EF G L
Sbjct: 391 AVVRLTLWGEEASKAPLEDYLHKVVAFKGVIPREFNGGYSLGTGFGSRVIAVPEISGVAE 450
Query: 653 ------------------------------MREIQDQQLGM-GDKADYCSVRGIIQVFRG 681
+ +Q+ Q G +K DY SV+ +I
Sbjct: 451 LYEWYNTVKPTVDVKMISQTSGSSSEAPRTIAGLQEMQFGKDSEKGDYVSVKAMITRINP 510
Query: 682 SNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQ 741
+N YK C S+ C KKVI +++G +RCEKCNK F + ++ + D T V+VT F
Sbjct: 511 NNALYKGCSSEGCQKKVI-ESDGDFRCEKCNKTMRHFKWLYMMQFELSDETGQVYVTAFG 569
Query: 742 NEAESILGVTAQEVGESTEDHPALKKALFTQYIF-----RLRAKLEHYNK 786
+ A ++G TA EVGE E +P A+F + F RLR K+E YN+
Sbjct: 570 DNATKVVGRTAAEVGELKEANPDEYNAVFEKLQFIPKMWRLRCKMETYNE 619
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 113/367 (30%), Positives = 178/367 (48%), Gaps = 37/367 (10%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPD--ENIDVL 63
ANK+F++ +DYE++ + + V + G++ + + ++ EI+ E IDVL
Sbjct: 303 ANKRFNNTGHDYEINLRNDSIV-----EAGGDVVAAPKLHLKRISLGEIAGHCGEMIDVL 357
Query: 64 GVC----IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN--KP 117
+ E +S GKT +KR++ L+D+S A V +TLWG+EA +
Sbjct: 358 AYVEKMDPEPTEFTSKAGKT----LVKREMELIDESGAVVRLTLWGEEASKAPLEDYLHK 413
Query: 118 VIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGM 177
V+A K EF GG +L S + P+I +L W++T T + +T G
Sbjct: 414 VVAFKGVIPREFNGGYSLGTGFGSRVIAVPEISGVAELYEWYNTVKPTVDVKMISQTSGS 473
Query: 178 GGGAAGNLLLMREIQDQQLGM-GDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 236
A + ++E+Q G +K DY SV+ +I +N YK C S+ C KKVI +
Sbjct: 474 SSEAPRTIAGLQEMQ---FGKDSEKGDYVSVKAMITRINPNNALYKGCSSEGCQKKVI-E 529
Query: 237 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 296
++G +RCEKCNK F + ++ + D T V+VT F + A ++G TA EVGE E
Sbjct: 530 SDGDFRCEKCNKTMRHFKWLYMMQFELSDETGQVYVTAFGDNATKVVGRTAAEVGELKEA 589
Query: 297 HPALKKALFTQYIF-----RLRAKLEHYN----------GTKKIPDGVNINSFAMLATQL 341
+P A+F + F RLR K+E YN G +++ I + L Q+
Sbjct: 590 NPDEYNAVFEKLQFIPKMWRLRCKMETYNEEVRQKMTVFGVEEVNQDKYIENLKQLIEQM 649
Query: 342 NDIITDG 348
I DG
Sbjct: 650 KSIEEDG 656
>gi|341875977|gb|EGT31912.1| hypothetical protein CAEBREN_17155 [Caenorhabditis brenneri]
Length = 1297
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 136/452 (30%), Positives = 205/452 (45%), Gaps = 71/452 (15%)
Query: 395 IGNPQPLNTNTDNSSTQQTPAAT---NTNGSNGVHNNVAIPR-QASAPV---VQTHPIVS 447
I N Q + +N + PAA NG + HN P Q AP PI
Sbjct: 823 IHNGQDVFSNRIRENMSNPPAAKVQKRENGEDASHNRAPAPELQRRAPSNTDRDVMPIAM 882
Query: 448 LSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNRFHDM 506
++ + I +T K IR + + K+F+ ++ D +G+ IR FN+ +
Sbjct: 883 ITQNVYGFKINGTITRKEAIRTF--PPKNTKVFNFEVTDSNGDTIRCVAFNELAESLYST 940
Query: 507 IEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLK 566
I ++ Y+I+N + PANK+F++ +DYE++ ++ + V P + V P + + L
Sbjct: 941 ITENVSYFITNGKVVPANKRFNNTGHDYEINLSNVSIVEPGGD--VVAAPKLNLKRISLG 998
Query: 567 TIAEISPDENIDVLGVC--IDA--AELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
IA S E IDVL +D E +S GKT +KRD+ L+D+S V +TLWG
Sbjct: 999 EIAGHS-GERIDVLAYVEKMDPKPTEFTSKAGKT----VVKRDMELIDESNRFVKLTLWG 1053
Query: 623 KEAETFDASNKPVIAVKA------------------ARV---SEFQGNLLL--------- 652
+EA D +K V+A K AR+ E G L
Sbjct: 1054 EEAIKADYLHK-VVAFKGVIPKKDFNGAYSLGTGYGARIIADPEISGVTELYEWYKTVKP 1112
Query: 653 -------------MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVI 699
+ +Q Q G +K D+ SV+ +I + YK C S+ C KKVI
Sbjct: 1113 TKPSGSSSEAPRTIAGLQKMQFGDSEKGDFASVKAMITRINPNTALYKGCSSEGCQKKVI 1172
Query: 700 DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGEST 759
+ + G +RCEKCNK F + ++ + D T V+VT F + A ++G TA EVGE
Sbjct: 1173 ELD-GEFRCEKCNKTMRHFKWLYMMQFELSDETGQVYVTAFGDNATKVVGRTAAEVGELK 1231
Query: 760 EDHPALKKALFTQYIF-----RLRAKLEHYNK 786
E P A+F + F RLR K+E YN+
Sbjct: 1232 ETKPGEYNAVFEKLKFVSKMWRLRCKMETYNE 1263
Score = 149 bits (375), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 157/327 (48%), Gaps = 27/327 (8%)
Query: 3 AAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDV 62
PANK+F++ +DYE++ ++ + V P + V P + + L IA S E IDV
Sbjct: 954 VVPANKRFNNTGHDYEINLSNVSIVEPGGD--VVAAPKLNLKRISLGEIAGHS-GERIDV 1010
Query: 63 LGVC--IDA--AELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPV 118
L +D E +S GKT +KRD+ L+D+S V +TLWG+EA D +K V
Sbjct: 1011 LAYVEKMDPKPTEFTSKAGKT----VVKRDMELIDESNRFVKLTLWGEEAIKADYLHKVV 1066
Query: 119 IAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMG 178
+F G +L + + +P+I +L W+ T T+ S
Sbjct: 1067 AFKGVIPKKDFNGAYSLGTGYGARIIADPEISGVTELYEWYKTVKPTKPSGSSSEAPRTI 1126
Query: 179 GGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNN 238
G +Q Q G +K D+ SV+ +I + YK C S+ C KKVI+ +
Sbjct: 1127 AG----------LQKMQFGDSEKGDFASVKAMITRINPNTALYKGCSSEGCQKKVIELD- 1175
Query: 239 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP 298
G +RCEKCNK F + ++ + D T V+VT F + A ++G TA EVGE E P
Sbjct: 1176 GEFRCEKCNKTMRHFKWLYMMQFELSDETGQVYVTAFGDNATKVVGRTAAEVGELKETKP 1235
Query: 299 ALKKALFTQYIF-----RLRAKLEHYN 320
A+F + F RLR K+E YN
Sbjct: 1236 GEYNAVFEKLKFVSKMWRLRCKMETYN 1262
>gi|298710029|emb|CBJ31747.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 419
Score = 155 bits (393), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 108/338 (31%), Positives = 164/338 (48%), Gaps = 31/338 (9%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANKKFSS N +YE++F ST + P N+D + S Y FV L + + ++ +DV+ V
Sbjct: 58 ANKKFSSFNAEYELTFDSSTQINPINDD--SRIGSATYAFVKLNEMEALEANKVLDVIAV 115
Query: 66 CI---DAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS---NKPVI 119
D A+ S GK KR++ LVD + + +TLWG A+ D S PV+
Sbjct: 116 VKSVEDHAQFVSRAGKQ----LDKRNLILVDDTCTEINLTLWGDMAKA-DGSRWEGNPVV 170
Query: 120 AVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQR----- 173
A K ++S+F G SL+ S++++ +PD+PE L+ WF + + F+ V+ R
Sbjct: 171 AFKGVKLSDFSGRSLNSLNASTLVN-DPDVPETADLRAWFDAAGGGSSFKSVTVRNGGGG 229
Query: 174 -TGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT---YKACPSQDC 229
+ ++ I D LG G+K D+ V+ I + Y ACP + C
Sbjct: 230 GSDDAAKKDISQRYTLQSITDGNLGNGEKPDWAVVKATISFIKLDGERLPWYTACPKEGC 289
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL-GVTAQ 288
NKKV + G ++CEKCN+ R +L + I D T WVT F ++ +L TA
Sbjct: 290 NKKVTETMEGAWQCEKCNQTHPECQRRYMLSMQISDNTGKAWVTAFNDQGVELLDNRTAD 349
Query: 289 EV------GESTEDHPALKKALFTQYIFRLRAKLEHYN 320
E+ G E +A F Y+ LR K + YN
Sbjct: 350 ELFQMKEEGNDAELEELFSEACFKTYMLTLRVKTDMYN 387
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 112/192 (58%), Gaps = 14/192 (7%)
Query: 467 IREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANK 525
+R+WNNARGSG LFS+DLLDE G EI+ T F + +++ ++++ +VY + +K ANK
Sbjct: 1 MRQWNNARGSGTLFSVDLLDEDGSEIKGTFFKQDADKWFQILQEGQVYAFTGGKVKVANK 60
Query: 526 KFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCI- 584
KFSS N +YE++F ST + P N+D + S Y FV L + + ++ +DV+ V
Sbjct: 61 KFSSFNAEYELTFDSSTQINPINDD--SRIGSATYAFVKLNEMEALEANKVLDVIAVVKS 118
Query: 585 --DAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS---NKPVIAVK 639
D A+ S G K KR++ LVD + + +TLWG A+ D S PV+A K
Sbjct: 119 VEDHAQFVSRAG----KQLDKRNLILVDDTCTEINLTLWGDMAKA-DGSRWEGNPVVAFK 173
Query: 640 AARVSEFQGNLL 651
++S+F G L
Sbjct: 174 GVKLSDFSGRSL 185
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Query: 653 MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT---YKACPSQDCNKKVIDQNNGMYRCE 709
++ I D LG G+K D+ V+ I + Y ACP + CNKKV + G ++CE
Sbjct: 245 LQSITDGNLGNGEKPDWAVVKATISFIKLDGERLPWYTACPKEGCNKKVTETMEGAWQCE 304
Query: 710 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL-GVTAQEV------GESTEDH 762
KCN+ R +L + I D T WVT F ++ +L TA E+ G E
Sbjct: 305 KCNQTHPECQRRYMLSMQISDNTGKAWVTAFNDQGVELLDNRTADELFQMKEEGNDAELE 364
Query: 763 PALKKALFTQYIFRLRAKLEHYN 785
+A F Y+ LR K + YN
Sbjct: 365 ELFSEACFKTYMLTLRVKTDMYN 387
>gi|340378814|ref|XP_003387922.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Amphimedon queenslandica]
Length = 240
Score = 155 bits (393), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 141/247 (57%), Gaps = 47/247 (19%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLATQLN+ IT +S++ IV++ + +++ + + + V+I ++L ++ ++G +
Sbjct: 1 MLATQLNEKITSNEISKYCIVRVDKMLINSIGA-----KKVMIFIKLTVLYSAQDVGGML 55
Query: 396 GNPQPLNTNTDNSSTQ--------------------------------QTP------AAT 417
G P+ LN+++ +S++ QTP +A
Sbjct: 56 GTPRQLNSDSADSNSTTPTVKDEPLARPPLAQRSQVGVAPAPVAPQPIQTPPRFYGNSAQ 115
Query: 418 NTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSG 477
T G G N + P + VV PI +L+PYQNKWTIKARVT+K P+R +NN+RG G
Sbjct: 116 RTGGMGGASNLMQSPGGGTKNVV---PITALNPYQNKWTIKARVTSKPPLRHYNNSRGEG 172
Query: 478 KLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMS 537
++ +++ +D SGEIRAT FN++ +RF +E +KVYY+S +KPANK + + NNDYE++
Sbjct: 173 RILTLEFVDHSGEIRATAFNEDADRFFPNVEVNKVYYVSRGRIKPANKIYYA-NNDYELT 231
Query: 538 FTHSTTV 544
TT+
Sbjct: 232 LGAETTI 238
>gi|340378810|ref|XP_003387920.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Amphimedon queenslandica]
Length = 251
Score = 155 bits (392), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 141/247 (57%), Gaps = 47/247 (19%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLATQLN+ IT +S++ IV++ + +++ + + + V+I ++L ++ ++G +
Sbjct: 1 MLATQLNEKITSNEISKYCIVRVDKMLINSIGA-----KKVMIFIKLTVLYSAQDVGGML 55
Query: 396 GNPQPLNTNTDNSSTQ--------------------------------QTP------AAT 417
G P+ LN+++ +S++ QTP +A
Sbjct: 56 GTPRQLNSDSTDSNSVTPTVKDEPLARPPLAQRSQVGVAPAPVAPQPIQTPPRFYGNSAQ 115
Query: 418 NTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSG 477
T G G N + P + VV PI +L+PYQNKWTIKARVT+K P+R +NN+RG G
Sbjct: 116 RTGGMGGASNLMQSPGGGTKNVV---PITALNPYQNKWTIKARVTSKPPLRHYNNSRGEG 172
Query: 478 KLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMS 537
++ +++ +D SGEIRAT FN++ +RF +E +KVYY+S +KPANK + + NNDYE++
Sbjct: 173 RILTLEFVDHSGEIRATAFNEDADRFFPNVEVNKVYYVSRGRIKPANKIYYA-NNDYELT 231
Query: 538 FTHSTTV 544
TT+
Sbjct: 232 LGAETTI 238
>gi|399216333|emb|CCF73021.1| unnamed protein product [Babesia microti strain RI]
Length = 676
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 129/463 (27%), Positives = 215/463 (46%), Gaps = 92/463 (19%)
Query: 407 NSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQT------------HPIVSLSPYQNK 454
N+ TQ T N S V + + RQA P T + I LS Y K
Sbjct: 184 NNETQNYLGDTFKNPSANVECDTGVCRQAKIPKNDTLGPIQRKNYGIYNNISELSLYTPK 243
Query: 455 WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYY 514
WTI AR+ K+ IR++N RG +LFS+DL D + EI+AT+F D N++ + E+ KVY
Sbjct: 244 WTILARIMLKSDIRKFNTPRGESQLFSLDLCDSTSEIKATLFGDAVNKWFEFFEEGKVYS 303
Query: 515 ISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPD 574
IS ++ ANKKF+ +N+ E+ V N D+ ++PS + F L I +
Sbjct: 304 ISKGQIRAANKKFNHLNHPCEIILDEHAIV--QNVDDDNSIPSSVFSFTKLSNIDILDQG 361
Query: 575 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS--- 631
IDV+GV + S+ K+ KRDI +VD S +S+ +TLW +A + S
Sbjct: 362 SLIDVIGVVCQHKNIQSLQKKSLGGVIEKRDIKIVDDSGSSIWVTLWHDKATSLTDSLLD 421
Query: 632 NKPVIAVKAARVSEF--------------------QGNLLLMREIQDQQL---------- 661
P+IA+K A+++++ Q +LL I+ Q
Sbjct: 422 TNPIIALKNAKITDWQMRKLDVQSSTKVVINPQHPQTDLLCKWWIEVTQFLTKNGKTTIF 481
Query: 662 ------GMGDKA---DYCS------------------VRGIIQVFRGSNTTYKACPSQDC 694
G+ ++ DY + VRG+I++ + + ++ ACP C
Sbjct: 482 NSVSIGGLEEEVESIDYLTKQATQIGQDANSQSKTFNVRGVIEILKENIYSWPACPG--C 539
Query: 695 NKKVIDQN--NGMYRCEKCNKEFNTFTYRLILPVMIGDWTN-SVWVTLFQNEAESIL-GV 750
KK++ + + ++RC +CN E + + +L I D T S+W + N E I+ GV
Sbjct: 540 RKKMLQEQPESPIWRCTRCNME-GSPNHTYMLNFKIVDTTQTSIWASAMGNVGEEIMGGV 598
Query: 751 TAQEV---------GESTEDHPALKKALFTQYIFRLRAKLEHY 784
A+E+ G++ ++ + A T++IF++R +++ +
Sbjct: 599 KAEELLAIASSEFNGKNLSNY--FEDARLTEHIFKVRVQMDSF 639
Score = 109 bits (273), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 169/342 (49%), Gaps = 30/342 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANKKF+ +N+ E+ V N D+ ++PS + F L I + IDV+GV
Sbjct: 312 ANKKFNHLNHPCEIILDEHAIV--QNVDDDNSIPSSVFSFTKLSNIDILDQGSLIDVIGV 369
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS---NKPVIAVK 122
+ S+ K+ KRDI +VD S +S+ +TLW +A + S P+IA+K
Sbjct: 370 VCQHKNIQSLQKKSLGGVIEKRDIKIVDDSGSSIWVTLWHDKATSLTDSLLDTNPIIALK 429
Query: 123 AARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF--STQTNTRFEPVSQRTGGMGGG 180
A+++++Q K L + S+ + +NP P+ L W+ TQ T+ + GG
Sbjct: 430 NAKITDWQMRK-LDVQSSTKVVINPQHPQTDLLCKWWIEVTQFLTKNGKTTIFNSVSIGG 488
Query: 181 AAGNLLLMREIQDQQLGMGDKADYCS----VRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 236
+ + + Q +G A+ S VRG+I++ + + ++ ACP C KK++ +
Sbjct: 489 LEEEVESIDYLTKQATQIGQDANSQSKTFNVRGVIEILKENIYSWPACPG--CRKKMLQE 546
Query: 237 N--NGMYRCEKCNKEFNTFTYRLILPVMIGDWTN-SVWVTLFQNEAESIL-GVTAQEV-- 290
+ ++RC +CN E + + +L I D T S+W + N E I+ GV A+E+
Sbjct: 547 QPESPIWRCTRCNME-GSPNHTYMLNFKIVDTTQTSIWASAMGNVGEEIMGGVKAEELLA 605
Query: 291 -------GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
G++ ++ + A T++IF++R +++ + G +I
Sbjct: 606 IASSEFNGKNLSNY--FEDARLTEHIFKVRVQMDSFLGEFRI 645
>gi|237839391|ref|XP_002368993.1| hypothetical protein TGME49_036080 [Toxoplasma gondii ME49]
gi|211966657|gb|EEB01853.1| hypothetical protein TGME49_036080 [Toxoplasma gondii ME49]
gi|221483366|gb|EEE21685.1| replication factor, putative [Toxoplasma gondii GT1]
Length = 458
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/413 (26%), Positives = 196/413 (47%), Gaps = 77/413 (18%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
P+ L+ Y KWTI+ARV K IR++N ARG G+LF+++L D+ GEIRAT FN +++
Sbjct: 8 PLKDLTAYVAKWTIRARVDVKGDIRKYNGARGPGQLFNVELKDKDGEIRATFFNAAVDKW 67
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVG-NMPSVKYC- 561
++++++ KVYY ++KP N +F+ +DYE++F ++++ E E G ++PS+
Sbjct: 68 YNILQEGKVYYFRGGSVKPKNPRFNHTRHDYELTFDEKSSIV---EAESGADIPSISRAD 124
Query: 562 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
V ++ I E + + ++ + D + S+T K+ + KRD+ LVD+ S+ +TLW
Sbjct: 125 LVDIRGIEEKEVNSTVSLIAIVHDYRPIQSITIKSTGQQKPKRDVFLVDEGGRSLVLTLW 184
Query: 622 GKEAETFDASN---KPVIAVKAARVSEF-------QGNLLL--------MREIQD--QQL 661
G++ ET KP++ +K+ +V ++ QGN + E+QD Q
Sbjct: 185 GEKTETLPEEQLCQKPLVLLKSVKVGDWNGRKLDSQGNTRVELFPDGNRAAEVQDWWNQE 244
Query: 662 G---------------------------------------MGDKADYCSVRGIIQVFRGS 682
G + DK Y + +++
Sbjct: 245 GSRRGSFASLSGGGLAVGRKEILKSLEQVAQEAAQAEAAVLSDKGVYATSCALLERIGDD 304
Query: 683 NTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQN 742
++ ACP DC KK+ ++ ++C C K+ + +L + + D T S+ +
Sbjct: 305 RFSWPACP--DCRKKMNEEMPRCWQCPSCRKQCEQPNHTYMLNLSLMDLTGSLRCSCIGE 362
Query: 743 EAESILGVTAQEVGESTEDHPALKK-----------ALFTQYIFRLRAKLEHY 784
+AE + T E +H AL + A ++IFR+ +K + +
Sbjct: 363 KAEEFMANTKAETVLLLAEHRALDEQGRSFQDIFADANLEEWIFRICSKYDSW 415
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 159/339 (46%), Gaps = 33/339 (9%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVG-NMPSVKYC-FVPLKTIAEISPDENIDV 62
P N +F+ +DYE++F ++++ E E G ++PS+ V ++ I E + + +
Sbjct: 86 PKNPRFNHTRHDYELTFDEKSSIV---EAESGADIPSISRADLVDIRGIEEKEVNSTVSL 142
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS---NKPVI 119
+ + D + S+T K+ + KRD+ LVD+ S+ +TLWG++ ET KP++
Sbjct: 143 IAIVHDYRPIQSITIKSTGQQKPKRDVFLVDEGGRSLVLTLWGEKTETLPEEQLCQKPLV 202
Query: 120 AVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGG 179
+K+ +V ++ G K S + V L PD ++Q W++ + + R S GG+
Sbjct: 203 LLKSVKVGDWNGRKLDSQGNTRV-ELFPDGNRAAEVQDWWNQEGSRRGSFASLSGGGL-- 259
Query: 180 GAAGNLLLMREI--------QDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNK 231
A G +++ + Q + + DK Y + +++ ++ ACP DC K
Sbjct: 260 -AVGRKEILKSLEQVAQEAAQAEAAVLSDKGVYATSCALLERIGDDRFSWPACP--DCRK 316
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG 291
K+ ++ ++C C K+ + +L + + D T S+ + +AE + T E
Sbjct: 317 KMNEEMPRCWQCPSCRKQCEQPNHTYMLNLSLMDLTGSLRCSCIGEKAEEFMANTKAETV 376
Query: 292 ESTEDHPALKK-----------ALFTQYIFRLRAKLEHY 319
+H AL + A ++IFR+ +K + +
Sbjct: 377 LLLAEHRALDEQGRSFQDIFADANLEEWIFRICSKYDSW 415
>gi|71756127|ref|XP_828978.1| replication factor A 51kDa subunit [Trypanosoma brucei TREU927]
gi|70834364|gb|EAN79866.1| replication factor A, 51kDa subunit, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261334907|emb|CBH17901.1| replication factor A, 51kDa subunit, putative [Trypanosoma brucei
gambiense DAL972]
Length = 463
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 163/328 (49%), Gaps = 17/328 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN+KFS++NNDYE+SF ++ + + ++P +Y FVP+ + + +DVL V
Sbjct: 91 ANRKFSNVNNDYELSFDNTCQISAARDVVSSSIPLQRYNFVPIAILKQREVGSLVDVLAV 150
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
++ EL ++ ++ + ++R + + D S A + +TLW + A+ + V+A++ +
Sbjct: 151 VLNVEELGTIVQRSTGRELVRRTVKVAD-STAGIDVTLWNENAKEWPHQPGTVLAMRQLK 209
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS-QRTGGMGGGAAGN 184
V F G TLS +M S +NP+IP+ KL+ WF + +S Q +G ++G
Sbjct: 210 VGSFD-GVTLSTTMQSSFDVNPNIPDVKKLREWFESTGGRDVSSLSMQGNNALGLASSGE 268
Query: 185 LL----LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQN--N 238
+ +I + LG G K DY +R + + Y ACP CNKKV+ +
Sbjct: 269 TYRGYKYIDDITTEGLGKGPKPDYIDLRCVPVYLKQDTQWYDACPQ--CNKKVMLEGAMG 326
Query: 239 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP 298
+RCEKC++ T R ++ + + D + VW+TLF G+TA E+ E+ P
Sbjct: 327 DRFRCEKCDQSI-VPTQRYLVSIQVTDNVSQVWLTLFNESGAEFFGMTAPELKRRQEEDP 385
Query: 299 AL-----KKALFTQYIFRLRAKLEHYNG 321
+ + + RLR K E G
Sbjct: 386 MFVTKVAQMRMNRPVLMRLRVKEEGLGG 413
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 110/397 (27%), Positives = 186/397 (46%), Gaps = 62/397 (15%)
Query: 447 SLSPY-QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHD 505
SLSP+ KW I+ARVT+K+ IR WN GKLFS L+DES IRAT+FN+ + F+
Sbjct: 14 SLSPFLGGKWWIRARVTDKSEIRTWNKPTSQGKLFSFTLIDESASIRATVFNEAVDMFNP 73
Query: 506 MIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPL 565
+I +VYY S +K AN+KFS++NNDYE+SF ++ + + ++P +Y FVP+
Sbjct: 74 LIVNGQVYYFSGGQVKNANRKFSNVNNDYELSFDNTCQISAARDVVSSSIPLQRYNFVPI 133
Query: 566 KTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA 625
+ + +DVL V ++ EL ++ ++ + ++R + + D S A + +TLW + A
Sbjct: 134 AILKQREVGSLVDVLAVVLNVEELGTIVQRSTGRELVRRTVKVAD-STAGIDVTLWNENA 192
Query: 626 ETFDASNKPVIAVKAARVSEFQG---------------NLLLMREIQDQQLGMGDK-ADY 669
+ + V+A++ +V F G N+ ++++++ G +
Sbjct: 193 KEWPHQPGTVLAMRQLKVGSFDGVTLSTTMQSSFDVNPNIPDVKKLREWFESTGGRDVSS 252
Query: 670 CSVRGIIQV-FRGSNTTYKAC--------------PSQD-----CNKKVIDQNNGMY-RC 708
S++G + S TY+ P D C + Q+ Y C
Sbjct: 253 LSMQGNNALGLASSGETYRGYKYIDDITTEGLGKGPKPDYIDLRCVPVYLKQDTQWYDAC 312
Query: 709 EKCNKEF-------NTF-----------TYRLILPVMIGDWTNSVWVTLFQNEAESILGV 750
+CNK+ + F T R ++ + + D + VW+TLF G+
Sbjct: 313 PQCNKKVMLEGAMGDRFRCEKCDQSIVPTQRYLVSIQVTDNVSQVWLTLFNESGAEFFGM 372
Query: 751 TAQEVGESTEDHPAL-----KKALFTQYIFRLRAKLE 782
TA E+ E+ P + + + RLR K E
Sbjct: 373 TAPELKRRQEEDPMFVTKVAQMRMNRPVLMRLRVKEE 409
>gi|154413577|ref|XP_001579818.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121914029|gb|EAY18832.1| hypothetical protein TVAG_294830 [Trichomonas vaginalis G3]
Length = 590
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 134/545 (24%), Positives = 251/545 (46%), Gaps = 97/545 (17%)
Query: 313 RAKLEHYNGTKKIPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSAT 372
RA L +GT IP AML ++L D+I + + +++++ +Y VS S
Sbjct: 38 RAALS--DGTHFIP--------AMLGSKLKDLIENKVIQRNSLIKLLKYTVSNNS----- 82
Query: 373 NRSVLIILELNIIKPGTEIGFKIGNPQPLNTNT------DNSSTQQTP--------AATN 418
+ LI+L + K E+ IG P L + D S+ +P A+
Sbjct: 83 -KQPLIVLNAELHK---EMNSIIGKPLALQIDRNDIPKPDLSAPMTSPQRGTITASPASV 138
Query: 419 TNGSNGVHNNVAIPR--QASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGS 476
TN + V V+ R Q++ + PI SL+ Y W++ R+ +K+ +R++ +R
Sbjct: 139 TNSPSKVKMTVSPTRSNQSTMQMTTNIPIASLNQYLTSWSLIVRIISKSQMRQFQGSR-P 197
Query: 477 GKLFSIDLLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYE 535
GKLFSI + D++ EI+ T FN E +F +++E+DKVY +S +K AN++++S +++E
Sbjct: 198 GKLFSIIMRDKNNDEIKGTFFNQEAEKFENLVEQDKVYKVSCGRVKKANERYNSTKSEFE 257
Query: 536 MSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGK 595
++F ++++I +D ++P+ F + ++++ + +D++ + + ++ K
Sbjct: 258 ITFDSTSSIIEIPDD--NSIPANVLKFTKISDCSKMT-GKTVDIISIITFIGDCQTIKTK 314
Query: 596 TNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG------- 648
+ + KR+IT+ D++ ++ +TLWG A FD + V+ VS+F+G
Sbjct: 315 SGS-SIEKRNITVSDET-GTIEVTLWGSSATEFDQKESEIFCVRNVTVSDFRGVSLNVGQ 372
Query: 649 ---------------------------------NLLL-----------MREIQDQQLGMG 664
LL+ + EI ++Q+
Sbjct: 373 SATIVVNPPDNDVKNIRNWYESLNDEKKENLKQKLLIPDYGQAATINCLSEIDEKQMCRT 432
Query: 665 DKADYCSVRGIIQVFRGSNT-TYKACPSQDCNKK--VIDQNNGMYRCEKCNKEFNTFTYR 721
+ + V +IQ S Y+ACP++ C +IDQ G C+KCNKE R
Sbjct: 433 ENGEVFCVNVMIQDMPSSRKPVYQACPNEACRGSGLIIDQETGKMICKKCNKEVTNPKLR 492
Query: 722 LILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFR-LRAK 780
L + +GD++ S ++ + +E + + + +D L+ L + FR LR K
Sbjct: 493 YSLSLNVGDYSGSAYINVIGDENSFMPLINVKPEEFEIDDTTKLRTMLLKKSFFRALRVK 552
Query: 781 LEHYN 785
+ N
Sbjct: 553 VRGKN 557
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 160/320 (50%), Gaps = 10/320 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN++++S +++E++F ++++I +D ++P+ F + ++++ + +D++ +
Sbjct: 245 ANERYNSTKSEFEITFDSTSSIIEIPDD--NSIPANVLKFTKISDCSKMT-GKTVDIISI 301
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ ++ K+ + KR+IT+ D++ ++ +TLWG A FD + V+
Sbjct: 302 ITFIGDCQTIKTKSGS-SIEKRNITVSDET-GTIEVTLWGSSATEFDQKESEIFCVRNVT 359
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
VS+F+G +L++ S+ + +NP + ++ W+ + + + E + Q+ G A +
Sbjct: 360 VSDFRGV-SLNVGQSATIVVNPPDNDVKNIRNWYESLNDEKKENLKQKLLIPDYGQAATI 418
Query: 186 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNT-TYKACPSQDCNKK--VIDQNNGMYR 242
+ EI ++Q+ + + V +IQ S Y+ACP++ C +IDQ G
Sbjct: 419 NCLSEIDEKQMCRTENGEVFCVNVMIQDMPSSRKPVYQACPNEACRGSGLIIDQETGKMI 478
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKK 302
C+KCNKE R L + +GD++ S ++ + +E + + + +D L+
Sbjct: 479 CKKCNKEVTNPKLRYSLSLNVGDYSGSAYINVIGDENSFMPLINVKPEEFEIDDTTKLRT 538
Query: 303 ALFTQYIFR-LRAKLEHYNG 321
L + FR LR K+ N
Sbjct: 539 MLLKKSFFRALRVKVRGKNS 558
>gi|403221677|dbj|BAM39809.1| replication factor-A protein 1 [Theileria orientalis strain
Shintoku]
Length = 659
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 116/411 (28%), Positives = 188/411 (45%), Gaps = 77/411 (18%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
I L+ Y KW I+ARV K+ IR++NN RG +LFS+DL D +GEIRAT F + N+++
Sbjct: 189 ISDLTLYTPKWLIRARVAYKSDIRKFNNQRGESQLFSVDLCDSNGEIRATFFGESVNKWY 248
Query: 505 DMIEKDKVYYISNCTLKPANKKFSSINNDYEMSF-THSTTVIPCNEDEVGNMPSVKYCFV 563
+E+ +VY IS LKPANKKF+S+ + E+ H + N+D + PS + F
Sbjct: 249 TFLEEGQVYSISGGQLKPANKKFNSLRHSCELVLDEHCHIQLFQNDDTI---PSFCFSFT 305
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
PL I + E IDV+GV + A +L +V K+ K KRD + D +++S+ +T WG
Sbjct: 306 PLDQIQNLKVGEQIDVIGVVVTAKDLQTVQVKSTGKALEKRDFLICDSTKSSIWLTSWGP 365
Query: 624 EAETFD---ASNKPVIAVKAARVSEFQGNLL-LMREIQ--------------------DQ 659
+ F+ + P++ +K +V E+QG L +M Q
Sbjct: 366 KIRNFNYEGPDSHPLVCLKGVKVIEWQGKKLDVMGSTQVIFEPVIQEALELRKWWNENSH 425
Query: 660 QLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMY------------- 706
L G + S + A +Q K ID N ++
Sbjct: 426 TLNFGTETSRGSSSKVFNQMSSLAEIISAT-NQALQFKSIDSNGMIFTTRALIEVLKDGT 484
Query: 707 ----RCEKCNKEFN--------------TFTYRLILPVMIGDWTNSVWVTLFQN---EAE 745
C C K N T T+ +L + I D T+ +WVT + + +
Sbjct: 485 FSWPSCPGCRKRMNNDDGWYCPRCENRGTPTHMYMLTLKIVDETSHMWVTAMTDVGEDVQ 544
Query: 746 SILGVTA------------QEVGESTEDHPALKKALFTQYIFRLRAKLEHY 784
SI+G A E G++ ++ ++ T+Y+F+++A +E++
Sbjct: 545 SIMGTKAYNLVKLMENGGTDETGKNFANY--FEEVRLTEYVFKIKATVENF 593
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/340 (26%), Positives = 167/340 (49%), Gaps = 37/340 (10%)
Query: 5 PANKKFSSINNDYEMSF-THSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVL 63
PANKKF+S+ + E+ H + N+D + PS + F PL I + E IDV+
Sbjct: 266 PANKKFNSLRHSCELVLDEHCHIQLFQNDDTI---PSFCFSFTPLDQIQNLKVGEQIDVI 322
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD---ASNKPVIA 120
GV + A +L +V K+ K KRD + D +++S+ +T WG + F+ + P++
Sbjct: 323 GVVVTAKDLQTVQVKSTGKALEKRDFLICDSTKSSIWLTSWGPKIRNFNYEGPDSHPLVC 382
Query: 121 VKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGG 180
+K +V E+Q GK L + S+ + P I E +L+ W++ ++T ++ + G
Sbjct: 383 LKGVKVIEWQ-GKKLDVMGSTQVIFEPVIQEALELRKWWNENSHT-LNFGTETSRGSSSK 440
Query: 181 AAGNLLLMREI-----QDQQLGMGDKADYC-SVRGIIQVFRGSNTTYKACPSQDCNKKVI 234
+ + EI Q Q D + R +I+V + ++ +CP C K+ +
Sbjct: 441 VFNQMSSLAEIISATNQALQFKSIDSNGMIFTTRALIEVLKDGTFSWPSCPG--CRKR-M 497
Query: 235 DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQN---EAESILGVTA---- 287
+ ++G Y C +C T T+ +L + I D T+ +WVT + + +SI+G A
Sbjct: 498 NNDDGWY-CPRCENR-GTPTHMYMLTLKIVDETSHMWVTAMTDVGEDVQSIMGTKAYNLV 555
Query: 288 --------QEVGESTEDHPALKKALFTQYIFRLRAKLEHY 319
E G++ ++ ++ T+Y+F+++A +E++
Sbjct: 556 KLMENGGTDETGKNFANY--FEEVRLTEYVFKIKATVENF 593
>gi|344235409|gb|EGV91512.1| Replication protein A 70 kDa DNA-binding subunit [Cricetulus
griseus]
Length = 209
Score = 152 bits (384), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 111/163 (68%), Gaps = 2/163 (1%)
Query: 489 GEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
GEIRAT FN++ ++F +IE +KVYY S TLK ANK+FS++ NDYEM+F + T+V+PC
Sbjct: 26 GEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFSAVKNDYEMTFNNETSVLPCE 85
Query: 549 EDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITL 608
+ ++P+V++ F + + S D +D++G+C + + +T K++ + KR+I L
Sbjct: 86 DGH--HLPTVQFDFTGISDLESKSKDSLVDIIGICKSYEDSTKITVKSSNREVAKRNIYL 143
Query: 609 VDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL 651
+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G L
Sbjct: 144 MDMSGKVVTATLWGEDADKFDGSRQPVMAIKGARVSDFGGRSL 186
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 107/153 (69%), Gaps = 3/153 (1%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+FS++ NDYEM+F + T+V+PC + ++P+V++ F + + S D +D++G+
Sbjct: 60 ANKQFSAVKNDYEMTFNNETSVLPCEDGH--HLPTVQFDFTGISDLESKSKDSLVDIIGI 117
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T K++ + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 118 CKSYEDSTKITVKSSNREVAKRNIYLMDMSGKVVTATLWGEDADKFDGSRQPVMAIKGAR 177
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGW 158
VS+F GG++LS+ SS + +NPDIPE +KL+GW
Sbjct: 178 VSDF-GGRSLSVLSSSTIIVNPDIPEAYKLRGW 209
>gi|428164777|gb|EKX33791.1| replication protein A1, 70kDa [Guillardia theta CCMP2712]
Length = 702
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 177/380 (46%), Gaps = 84/380 (22%)
Query: 474 RGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINND 533
+G G+LF+ID++D +G+IR T FND+ +++ ++ +KVY I T+K AN+KF++ +++
Sbjct: 304 KGEGRLFNIDIMDHTGDIRGTFFNDDADKWFPHLQANKVYKIRGGTIKQANRKFNTTSSE 363
Query: 534 YEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVT 593
YE++F +T + E P V Y F ++ I P +DVL V D L SVT
Sbjct: 364 YEITFNRDSTFDIVADSEA---PKVSYNFRKIEEIENTEPQSIVDVLAVVHDVQPLGSVT 420
Query: 594 GKTNQKT---YMKRDITLVDQSQASVTMTLWG--KEAETFDASNKPVIAVKAARVSEFQG 648
K+ KRD++L+D ++ +TLW K+ T + + PVIA+K RVS+F G
Sbjct: 421 VKSGSNAGNQIAKRDVSLLDTGGKTIKLTLWDDHKDVVTENDMSNPVIAIKGVRVSDFNG 480
Query: 649 NLL-------------------------------------------------LMREIQDQ 659
L + +I+ +
Sbjct: 481 RSLSTTRSSMIEMNPDLQEAHLLKGWYDCHGKSAVFQAVGGSMSSGSKDSRKTISQIKGE 540
Query: 660 QLGMGDKADYCSVRGIIQVFRGSNT-TYKACPSQDCNKKVIDQNNGMY---------RCE 709
LG +K DY ++R + F+ T Y A P + KKVI + + RCE
Sbjct: 541 NLGNAEKPDYFTLRAWVTYFKHDGTWNYPANP--ETKKKVIAHGDSWFDESTQQTIERCE 598
Query: 710 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE----DHPAL 765
+ R ++ + D+T S W + F ++ ++LG TA E+ E + D+ A
Sbjct: 599 R----------RYVMNLSCSDFTGSHWFSAFNDQGIALLGKTADELQELKDSMNPDYEAT 648
Query: 766 KKA-LFTQYIFRLRAKLEHY 784
+A +F Y+ ++RAK E +
Sbjct: 649 WQASVFKPYVLKVRAKAETW 668
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 173/341 (50%), Gaps = 40/341 (11%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN+KF++ +++YE++F +T + E P V Y F ++ I P +DVL V
Sbjct: 353 ANRKFNTTSSEYEITFNRDSTFDIVADSEA---PKVSYNFRKIEEIENTEPQSIVDVLAV 409
Query: 66 CIDAAELSSVTGKTNQKT---YMKRDITLVDQSQASVTMTLWG--KEAETFDASNKPVIA 120
D L SVT K+ KRD++L+D ++ +TLW K+ T + + PVIA
Sbjct: 410 VHDVQPLGSVTVKSGSNAGNQIAKRDVSLLDTGGKTIKLTLWDDHKDVVTENDMSNPVIA 469
Query: 121 VKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGG-MGG 179
+K RVS+F G ++LS + SS++ +NPD+ E H L+GW+ + V Q GG M
Sbjct: 470 IKGVRVSDFNG-RSLSTTRSSMIEMNPDLQEAHLLKGWYDCHGKS---AVFQAVGGSMSS 525
Query: 180 GAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNT-TYKACPSQDCNKKVIDQNN 238
G+ + + +I+ + LG +K DY ++R + F+ T Y A P + KKVI +
Sbjct: 526 GSKDSRKTISQIKGENLGNAEKPDYFTLRAWVTYFKHDGTWNYPANP--ETKKKVIAHGD 583
Query: 239 GMY---------RCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
+ RCE+ R ++ + D+T S W + F ++ ++LG TA E
Sbjct: 584 SWFDESTQQTIERCER----------RYVMNLSCSDFTGSHWFSAFNDQGIALLGKTADE 633
Query: 290 VGESTE----DHPALKKA-LFTQYIFRLRAKLEHYNGTKKI 325
+ E + D+ A +A +F Y+ ++RAK E + ++
Sbjct: 634 LQELKDSMNPDYEATWQASVFKPYVLKVRAKAETWQDETRV 674
Score = 43.5 bits (101), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 14/104 (13%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AMLATQLN I+ L +F IV+IK I + V S R ++IIL + + P +
Sbjct: 61 AMLATQLNGIVNAKELDKFCIVEIKDCICNVVQS-----RRIVIILSIEVKGP--PMAQM 113
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAP 438
IG P +++ D S QQ+ A N S+ A P ++AP
Sbjct: 114 IGKPVSIDSAGD-PSGQQSKAPQNAMPSS------AAPSYSTAP 150
>gi|323450756|gb|EGB06636.1| hypothetical protein AURANDRAFT_71962 [Aureococcus anophagefferens]
Length = 1589
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 172/339 (50%), Gaps = 23/339 (6%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEIS-PDE-NIDV 62
P+NK+++SI +++E++F + TV P ++D G + + + + A+ P E N+D+
Sbjct: 987 PSNKQYTSIPHEFEVTFGN-VTVEPADDD--GAIARIVGDWKKISMFADGGGPREGNVDI 1043
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA--SNKPVIA 120
+GV A +T K + KR++ L D S V +T WG+ A DA +PV+A
Sbjct: 1044 VGVIKAAFPAGQITSKRTGQELTKREVVLCDDSGYDVRLTFWGELALRDDAFFEAQPVLA 1103
Query: 121 VKAARVSEFQGGKTLSLSMSSVLSLN-PDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGG 179
K RVS+F GG +LS S L + + PE +L+ W+ T+ R P TG GG
Sbjct: 1104 AKGLRVSDF-GGVSLSSGFGSQLIFDGQEDPESLRLRAWW-TEGGGREAPTVALTGASGG 1161
Query: 180 GAA----GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVID 235
A G+ +++ +I+ +QLG G+K DY + +G + + Y+AC + C KKV+
Sbjct: 1162 SGAPAAFGDRIVLDDIKGRQLGFGEKPDYVTFKGTLNFVKTDRLWYEACAQEGCQKKVVQ 1221
Query: 236 QNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESI-LGVTAQEVGEST 294
++G + CEKC R ++ D + WV+ F + A I LGV A ++
Sbjct: 1222 NSDGTWHCEKCQATNAECKRRYLMSSTFVDDSAQSWVSAFNDHATKIFLGVNADDLAAYK 1281
Query: 295 ED--------HPALKKALFTQYIFRLRAKLEHYNGTKKI 325
E+ +K+ LF QY+ ++R K E + ++
Sbjct: 1282 EEVENEDGKFEDYMKQFLFKQYVVKVRVKSEVWQEQSRV 1320
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 102/348 (29%), Positives = 166/348 (47%), Gaps = 33/348 (9%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DG + +M A+QL ++ G L ++ +++++ + N+S++I+L++ +
Sbjct: 776 ISDGARFTT-SMAASQLATMLKGGELQAGCFARLNKFVLNTIQ-----NKSIVILLDVAV 829
Query: 385 IKP-----GTEIGFKIGNPQP-----------LNTNTDNSSTQQTPAATNTNGSNGVHN- 427
+ G + G P P + Q N
Sbjct: 830 VGAPTGLVGAPTSYPDGAPLPSATAAALGGPAAPAPARAFAPQHNARPAPAAAPKPPSNF 889
Query: 428 -NVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD 486
A I L+PYQ ++TIKARVT K P+R WN SG LFS+DLLD
Sbjct: 890 GAAMRGAAAPGGGGAFRSISELNPYQQRFTIKARVTAKGPMRTWNKPTSSGNLFSVDLLD 949
Query: 487 ESGEIRATMFNDECNRFHDMIEKDKVYYISNCT--LKPANKKFSSINNDYEMSFTHSTTV 544
SGEIR T F + ++ ++E+ KVY + LKP+NK+++SI +++E++F + TV
Sbjct: 950 GSGEIRGTFFKEVADKVFPLLEEGKVYVFQETSGRLKPSNKQYTSIPHEFEVTFGN-VTV 1008
Query: 545 IPCNEDEVGNMPSVKYCFVPLKTIAE-ISPDE-NIDVLGVCIDAAELSSVTGKTNQKTYM 602
P ++D G + + + + A+ P E N+D++GV A +T K +
Sbjct: 1009 EPADDD--GAIARIVGDWKKISMFADGGGPREGNVDIVGVIKAAFPAGQITSKRTGQELT 1066
Query: 603 KRDITLVDQSQASVTMTLWGKEAETFDA--SNKPVIAVKAARVSEFQG 648
KR++ L D S V +T WG+ A DA +PV+A K RVS+F G
Sbjct: 1067 KREVVLCDDSGYDVRLTFWGELALRDDAFFEAQPVLAAKGLRVSDFGG 1114
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 75/148 (50%), Gaps = 9/148 (6%)
Query: 648 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 707
G+ +++ +I+ +QLG G+K DY + +G + + Y+AC + C KKV+ ++G +
Sbjct: 1169 GDRIVLDDIKGRQLGFGEKPDYVTFKGTLNFVKTDRLWYEACAQEGCQKKVVQNSDGTWH 1228
Query: 708 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESI-LGVTAQEVGESTED----- 761
CEKC R ++ D + WV+ F + A I LGV A ++ E+
Sbjct: 1229 CEKCQATNAECKRRYLMSSTFVDDSAQSWVSAFNDHATKIFLGVNADDLAAYKEEVENED 1288
Query: 762 ---HPALKKALFTQYIFRLRAKLEHYNK 786
+K+ LF QY+ ++R K E + +
Sbjct: 1289 GKFEDYMKQFLFKQYVVKVRVKSEVWQE 1316
>gi|221052666|ref|XP_002261056.1| replication factor a related protein [Plasmodium knowlesi strain H]
gi|194247060|emb|CAQ38244.1| replication factor a related protein [Plasmodium knowlesi strain H]
Length = 1191
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 126/435 (28%), Positives = 199/435 (45%), Gaps = 92/435 (21%)
Query: 433 RQASAPVVQTHP-----IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDE 487
+Q + PV++ + I LS Y +KW IKARV K +R++ + GK+F+I+L DE
Sbjct: 699 QQGNNPVIKINDGILMHINKLSQYSSKWIIKARVQFKDVVRKYYSGNKEGKVFNIELCDE 758
Query: 488 SGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPC 547
GEI+ F ++++D ++ K+Y IS +K ANKKF++I +DYE++ ++ +
Sbjct: 759 DGEIKVNFFGKAVDKWYDYLQLGKIYKISKGYIKAANKKFTTIKHDYEITLDENSIIEAL 818
Query: 548 NEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDIT 607
E++ N+P Y F ++ I + +DV+GV E + + K + KRDI
Sbjct: 819 EEND--NIPKFIYNFTSIENIKNLKVGSLVDVIGVVFSYQESTQILIKKTGQYKEKRDII 876
Query: 608 LVDQSQASVTMTLWGKEAETFDAS---NKPVIAVKAARVSEFQGNLL---------LMRE 655
L+D S+ ++ +TLWG A + + +I K +V E+QG L + E
Sbjct: 877 LIDDSKETINVTLWGDHALNIEEGYLKDNSIICFKNLKVGEWQGIKLESHPKTKIDINPE 936
Query: 656 IQDQQL------------------GMG-------------------DKADYCSVRGIIQV 678
I Q+ G G D S +GII
Sbjct: 937 IDRAQMLQTWWRNNKQNLYSSVNIGSGIFHMELQKTIEEIKKDVNLANEDALSGKGIIFT 996
Query: 679 FRG-------SNTTYKACPSQDCNKKVI---------DQNN------GMYRCEKCNKEFN 716
G S Y ACP DCNKK+I D N+ MY C KCNK N
Sbjct: 997 TFGFIDHIYNSMPVYSACP--DCNKKMISNVVEEEEDDMNSPQMMDQSMY-CSKCNKN-N 1052
Query: 717 TFTYRLILPVMIGDWTNSVWVTLFQNEAESIL-GVTAQE---------VGESTEDHPALK 766
T TY + + I D T+S+ T F A +I+ G++A E E+ E+ ++
Sbjct: 1053 TPTYSYFINLKITDSTDSLRATAFAGCARTIMNGLSANEFMALRQEYVTQENIENFDLIE 1112
Query: 767 KALFTQYIFRLRAKL 781
KA ++ FR++A +
Sbjct: 1113 KAKLNEFFFRIKAYM 1127
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 171/357 (47%), Gaps = 52/357 (14%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANKKF++I +DYE++ ++ + E++ N+P Y F ++ I + +DV+GV
Sbjct: 794 ANKKFTTIKHDYEITLDENSIIEALEEND--NIPKFIYNFTSIENIKNLKVGSLVDVIGV 851
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS---NKPVIAVK 122
E + + K + KRDI L+D S+ ++ +TLWG A + + +I K
Sbjct: 852 VFSYQESTQILIKKTGQYKEKRDIILIDDSKETINVTLWGDHALNIEEGYLKDNSIICFK 911
Query: 123 AARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAA 182
+V E+QG K L + + +NP+I LQ W+ + V+ +G G
Sbjct: 912 NLKVGEWQGIK-LESHPKTKIDINPEIDRAQMLQTWWRNNKQNLYSSVN-----IGSGIF 965
Query: 183 GNLLLMREIQD--QQLGMGDKADYCSVRGIIQVFRG-------SNTTYKACPSQDCNKKV 233
++ L + I++ + + + ++ D S +GII G S Y ACP DCNKK+
Sbjct: 966 -HMELQKTIEEIKKDVNLANE-DALSGKGIIFTTFGFIDHIYNSMPVYSACP--DCNKKM 1021
Query: 234 I---------DQNN------GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNE 278
I D N+ MY C KCNK NT TY + + I D T+S+ T F
Sbjct: 1022 ISNVVEEEEDDMNSPQMMDQSMY-CSKCNKN-NTPTYSYFINLKITDSTDSLRATAFAGC 1079
Query: 279 AESIL-GVTAQE---------VGESTEDHPALKKALFTQYIFRLRAKL-EHYNGTKK 324
A +I+ G++A E E+ E+ ++KA ++ FR++A + H + KK
Sbjct: 1080 ARTIMNGLSANEFMALRQEYVTQENIENFDLIEKAKLNEFFFRIKAYMTSHMDELKK 1136
>gi|424513270|emb|CCO66854.1| predicted protein [Bathycoccus prasinos]
Length = 587
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 143/244 (58%), Gaps = 12/244 (4%)
Query: 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDE 499
++ PI SL+PYQ +WTIKA++ K R + NA+G GK+ +++L+D G I+AT++ +
Sbjct: 121 RSQPIASLNPYQPQWTIKAKLAVKGNTRTYRNAKGEGKVLTVELVDSEGTAIQATLWREA 180
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK 559
R+ +++E K+YY+S +L+PAN++++++NNDYEMS + ++ +E+E + K
Sbjct: 181 VERYENVLEVGKLYYVSKGSLRPANRQYTTVNNDYEMSLDGKSEIVEASEEEQLESAAKK 240
Query: 560 -----YCFVPLKTIAEI--SPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS 612
+ FV + +A+ S DV V A+LS+V K++ KR++TL D+S
Sbjct: 241 IFEKAFEFVSIGDLAKRVNSKRATCDVCAVVKSVADLSAVKRKSDNSEIQKRELTLCDES 300
Query: 613 QASVTMTLWG----KEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKAD 668
++V +TLW ++ E PVI V++ RV+E++G L + Q+ D+A
Sbjct: 301 SSTVQLTLWNALATEQGEKLKEMTNPVIIVRSVRVTEYEGVSLGTLGKSEMQIFELDEAA 360
Query: 669 YCSV 672
SV
Sbjct: 361 KASV 364
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/354 (28%), Positives = 165/354 (46%), Gaps = 39/354 (11%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK-----YCFVPLKTIAEI--SPD 57
PAN++++++NNDYEMS + ++ +E+E + K + FV + +A+ S
Sbjct: 203 PANRQYTTVNNDYEMSLDGKSEIVEASEEEQLESAAKKIFEKAFEFVSIGDLAKRVNSKR 262
Query: 58 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEAETFDA 113
DV V A+LS+V K++ KR++TL D+S ++V +TLW ++ E
Sbjct: 263 ATCDVCAVVKSVADLSAVKRKSDNSEIQKRELTLCDESSSTVQLTLWNALATEQGEKLKE 322
Query: 114 SNKPVIAVKAARVSEFQGGK--TLSLSMSSVLSLNP---------DIPE-CHKLQGWFST 161
PVI V++ RV+E++G TL S + L+ ++PE + WF
Sbjct: 323 MTNPVIIVRSVRVTEYEGVSLGTLGKSEMQIFELDEAAKASVEEGEVPEKAIETAKWFKE 382
Query: 162 Q-TNTRFEPVSQRTGGMGGGAAGNLLLMR-----EIQDQQL-GMGDKADYCSV-RGIIQV 213
N F+ ++ G G L + + Q +++ DK C V R I
Sbjct: 383 NGENATFKTAAEGAGLSVQQRGGKLAPLERQTLVDFQPEEIPSASDKPKMCIVPRASILT 442
Query: 214 FRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVT 273
R Y A P + N KV ++ NG + C K K + T R I+ I D + S W+T
Sbjct: 443 IREGTMWYCATPEEGNNAKV-EEENGQWYCAKNQKTYATCKRRYIMGAKIADESGSCWLT 501
Query: 274 LFQNEAESILGVTAQEVGESTEDHPALKKALF-------TQYIFRLRAKLEHYN 320
LF ++ E + G TA E+ E E+ A+ + F+L++K+E YN
Sbjct: 502 LFNDDGEKLFGHTADEMHEFQENDSDKYDAILRAAQGAKKSFTFKLKSKVEEYN 555
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 665 DKADYCSV-RGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLI 723
DK C V R I R Y A P + N KV ++ NG + C K K + T R I
Sbjct: 428 DKPKMCIVPRASILTIREGTMWYCATPEEGNNAKV-EEENGQWYCAKNQKTYATCKRRYI 486
Query: 724 LPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALF-------TQYIFR 776
+ I D + S W+TLF ++ E + G TA E+ E E+ A+ + F+
Sbjct: 487 MGAKIADESGSCWLTLFNDDGEKLFGHTADEMHEFQENDSDKYDAILRAAQGAKKSFTFK 546
Query: 777 LRAKLEHYN 785
L++K+E YN
Sbjct: 547 LKSKVEEYN 555
>gi|390352290|ref|XP_800067.3| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
isoform 2 [Strongylocentrotus purpuratus]
Length = 275
Score = 148 bits (374), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 120/202 (59%), Gaps = 33/202 (16%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AMLATQLN++++ G L +++K Y + + A +R V+++L+L+I+K G+EIG
Sbjct: 57 AMLATQLNEMVSTGELDVKAAMKLKNYSCNPI----ANDRRVIVVLDLDIVKKGSEIGVS 112
Query: 395 IGNPQPL-------------NTNTDNSSTQQTP---------------AATNTNGSNGVH 426
IG+P P+ + D++ + P A N G+
Sbjct: 113 IGDPTPMRAPGQGGAAPAQQQSRPDSTVSHDPPQTARPTSYGTGAPASATPNKQGTFYGQ 172
Query: 427 NNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD 486
+N A+ ++P + PI SL+PYQN+WTIKARVTNKT IR W+NARG GKLFS+DLLD
Sbjct: 173 SNSAMGGSTTSPK-KVQPISSLTPYQNRWTIKARVTNKTAIRTWSNARGEGKLFSMDLLD 231
Query: 487 ESGEIRATMFNDECNRFHDMIE 508
+SGEIR T F D +++++MIE
Sbjct: 232 QSGEIRCTAFKDMVDKYYEMIE 253
>gi|84995782|ref|XP_952613.1| replication factor-a protein 1 [Theileria annulata strain Ankara]
gi|65302774|emb|CAI74881.1| replication factor-a protein 1, putative [Theileria annulata]
Length = 625
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 134/255 (52%), Gaps = 7/255 (2%)
Query: 402 NTNTDNSSTQQTPAATNTNGS--NGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKA 459
NT TD +S P N + N P V I L+ Y KW I+A
Sbjct: 143 NTMTDLNSPVSGPVRKQENNRTVKTISNPYDPPMNKGKKDVPLTKISDLTLYTPKWQIRA 202
Query: 460 RVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCT 519
RV K+ IR++NN RG +LFS+DL D +GEIRA F + N+++ +E+ +VY IS
Sbjct: 203 RVVFKSEIRKFNNQRGESQLFSVDLCDSNGEIRAVFFGESVNKWYSFLEEGQVYSISGGQ 262
Query: 520 LKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDV 579
LKPANK+++++ + E+ S+ + DE ++PS Y F PL + +I E IDV
Sbjct: 263 LKPANKRYNNLKHSCELILDESSYIQLFQNDE--SIPSFCYSFTPLDQLQDIKSGETIDV 320
Query: 580 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA---SNKPVI 636
+ + + A +L + K KRD L D + +V +T WG++ + F+ ++ P++
Sbjct: 321 IAIVVTARDLQKINNKATGNNVEKRDFLLCDSTNTTVWVTSWGQKTQLFNYEGDNSHPLV 380
Query: 637 AVKAARVSEFQGNLL 651
+K +V E+QG L
Sbjct: 381 CLKGVKVGEWQGKKL 395
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 164/338 (48%), Gaps = 24/338 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK+++++ + E+ S+ + DE ++PS Y F PL + +I E IDV+
Sbjct: 265 PANKRYNNLKHSCELILDESSYIQLFQNDE--SIPSFCYSFTPLDQLQDIKSGETIDVIA 322
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA---SNKPVIAV 121
+ + A +L + K KRD L D + +V +T WG++ + F+ ++ P++ +
Sbjct: 323 IVVTARDLQKINNKATGNNVEKRDFLLCDSTNTTVWVTSWGQKTQLFNYEGDNSHPLVCL 382
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST---QTNTRFEPVSQRTGGMG 178
K +V E+Q GK L + +S+ + P IPE KL+ W++ N + E V
Sbjct: 383 KGVKVGEWQ-GKKLDVQISTQVICEPVIPEALKLRKWWNENGHNINFKQETVKTNNNFFN 441
Query: 179 GGAAGNLLLMREIQDQQLGMGDKADYC-SVRGIIQVFRGSNTTYKACPSQDCNKKVIDQN 237
+ ++ Q Q D + RG+I+V + +N + +C C KK + +
Sbjct: 442 KLCTISHIISSTNQGLQFKSIDSNGMVFTTRGLIEVLKDTNFCFPSCTG--CRKK-MSND 498
Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA------QEVG 291
G + C KCN N + IL + I D ++ +W + + ESI+G+ A E G
Sbjct: 499 QGCWYCSKCNSSTNPI-HLYILNIKIVDESSHIWASAMADVGESIMGIKAYNLINLMERG 557
Query: 292 ESTEDHPA----LKKALFTQYIFRLRAKLEHYNGTKKI 325
S E+ + + A T+YIF+++A +E++ +I
Sbjct: 558 PSNENEKSFINYFEDARLTEYIFKIKATVENFMDEPRI 595
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 14/124 (11%)
Query: 671 SVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGD 730
+ RG+I+V + +N + +C C KK + + G + C KCN N + IL + I D
Sbjct: 470 TTRGLIEVLKDTNFCFPSCTG--CRKK-MSNDQGCWYCSKCNSSTNPI-HLYILNIKIVD 525
Query: 731 WTNSVWVTLFQNEAESILGVTA------QEVGESTEDHPA----LKKALFTQYIFRLRAK 780
++ +W + + ESI+G+ A E G S E+ + + A T+YIF+++A
Sbjct: 526 ESSHIWASAMADVGESIMGIKAYNLINLMERGPSNENEKSFINYFEDARLTEYIFKIKAT 585
Query: 781 LEHY 784
+E++
Sbjct: 586 VENF 589
>gi|384246948|gb|EIE20436.1| replication factor-a protein [Coccomyxa subellipsoidea C-169]
Length = 630
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 110/372 (29%), Positives = 187/372 (50%), Gaps = 71/372 (19%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELN----------- 383
A+ ATQL+D++T+ + ++++++ Y+ + V+ NR VLI+L+L+
Sbjct: 58 AIPATQLDDLVTNQVVVVGSVIRLEEYLFNNVN-----NRQVLILLQLDNLGISDKMADA 112
Query: 384 -IIKPGTEIGFKIGNPQPLNTNTDNS-----STQQTP----------------------A 415
+ G G G P PL + + + P
Sbjct: 113 TEVGKGQNSGGNAGGPAPLLGGAGSGPYAAINGEDAPLYEADMTACAAGGYGGGGGGGGG 172
Query: 416 ATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNA-- 473
NG+ H +A R + P + PI SL+ YQ+ WTIKAR+TNK+ IR ++NA
Sbjct: 173 GYGQNGNYKGHGPIA--RNEAPPRIV--PISSLNSYQSHWTIKARITNKSEIRRYSNAPK 228
Query: 474 ----RGSGKLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKK-- 526
+GKLFS +LLD + GEIR FN ++F ++++ V +S +LK NKK
Sbjct: 229 CAWCMHAGKLFSFELLDAQGGEIRGCGFNQCVDKFEPIMQQGAVIMMSKASLK--NKKPG 286
Query: 527 --FSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCI 584
F++ +DYE++ +T + C EDE +P ++Y F+ +K + + +E +D++G+ +
Sbjct: 287 SAFNNTRHDYEITLEPNTVIEVCEEDERA-IPKMQYHFIKVKELNDKFANETVDIIGI-V 344
Query: 585 DAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA--------ETFDASNKPVI 636
D + S+V K MKR+I++ D S ASV +TLWG + E F+ V+
Sbjct: 345 DKVDPSAVIQTREGKELMKRNISIRDDSGASVEITLWGTYSSEPGDQLEEVFNGGVHSVL 404
Query: 637 AVKAARVSEFQG 648
A+K A++ ++ G
Sbjct: 405 ALKNAKIGDYNG 416
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 104/352 (29%), Positives = 173/352 (49%), Gaps = 34/352 (9%)
Query: 3 AAPANKK----FSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDE 58
A+ NKK F++ +DYE++ +T + C EDE +P ++Y F+ +K + + +E
Sbjct: 278 ASLKNKKPGSAFNNTRHDYEITLEPNTVIEVCEEDERA-IPKMQYHFIKVKELNDKFANE 336
Query: 59 NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA--------ET 110
+D++G+ +D + S+V K MKR+I++ D S ASV +TLWG + E
Sbjct: 337 TVDIIGI-VDKVDPSAVIQTREGKELMKRNISIRDDSGASVEITLWGTYSSEPGDQLEEV 395
Query: 111 FDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPV 170
F+ V+A+K A++ ++ G +TLS ++ L+++PD+PE L+ WF + PV
Sbjct: 396 FNGGVHSVLALKNAKIGDYNG-RTLSTVSTTTLTVDPDVPEAGHLRHWFDSAGGAA-APV 453
Query: 171 SQRTGGMGGGAAGNL----LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS 226
S T G G G + + I+++ LG + + I + Y AC
Sbjct: 454 SALTSGSGASVGGGKGDRRVTLATIKEEALGTNSTNAWVQIVCTITFVKSDPIAYPACTL 513
Query: 227 Q----DCNKKVIDQNNG----MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNE 278
Q CNKKV D G + CE+C+ YR +L + I D + WVT FQ E
Sbjct: 514 QYNGKQCNKKVTDSGGGDGPNRWWCERCSAACEA-EYRYMLNLNIEDHSGKEWVTAFQEE 572
Query: 279 AESILGVTAQEVGESTEDHPALKKALFTQ-----YIFRLRAKLEHYNGTKKI 325
+ I+G TA E+ E E L +A Y+F+L+ + + ++I
Sbjct: 573 GKQIIGYTANEMQELKEAESPLFEARLNDVKCRSYLFKLKVSEDTWQDEQRI 624
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 656 IQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQ----DCNKKVIDQNNG----MYR 707
I+++ LG + + I + Y AC Q CNKKV D G +
Sbjct: 478 IKEEALGTNSTNAWVQIVCTITFVKSDPIAYPACTLQYNGKQCNKKVTDSGGGDGPNRWW 537
Query: 708 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKK 767
CE+C+ YR +L + I D + WVT FQ E + I+G TA E+ E E L +
Sbjct: 538 CERCSAACEA-EYRYMLNLNIEDHSGKEWVTAFQEEGKQIIGYTANEMQELKEAESPLFE 596
Query: 768 ALFTQ-----YIFRLR 778
A Y+F+L+
Sbjct: 597 ARLNDVKCRSYLFKLK 612
>gi|303290622|ref|XP_003064598.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454196|gb|EEH51503.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 541
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 147/263 (55%), Gaps = 16/263 (6%)
Query: 393 FKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQ 452
F+I + L ++ +TPAA G A P + +T I SL+PY
Sbjct: 51 FEIVDDCVLTDEYKENAETETPAAKKRKVDGG-----AAPTSSGK---KTQSIASLNPYT 102
Query: 453 NKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNRFHDMIEKDK 511
WTIKA++ +K +R + NARG G++ +I+L+D++G I+ATM+ D +++ ++E K
Sbjct: 103 GNWTIKAKLASKGAVRTFRNARGEGRVCTIELVDDNGTAIQATMWKDAIDKYDAIMEVGK 162
Query: 512 VYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSVKYCFVPLKTI-A 569
VYY+S +L+PAN+++S++NNDYEMS + PC + +V M S Y V + +
Sbjct: 163 VYYVSRGSLRPANRQYSNVNNDYEMSLDGKCDISPCEDPCDVSKM-SRAYELVAIDALPT 221
Query: 570 EISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEA 625
+I ++DVL EL ++ K++ RDITL+D ++ +V++TLWG ++
Sbjct: 222 KIGTRGSVDVLACVAAVGELRAIRRKSDDSEVQVRDITLLDDTKKTVSLTLWGELATEQG 281
Query: 626 ETFDASNKPVIAVKAARVSEFQG 648
E V+A++ RV+++ G
Sbjct: 282 ERLANEIGAVVALRGLRVTDYNG 304
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 168/343 (48%), Gaps = 25/343 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSVKYCFVPLKTI-AEISPDENIDV 62
PAN+++S++NNDYEMS + PC + +V M S Y V + + +I ++DV
Sbjct: 173 PANRQYSNVNNDYEMSLDGKCDISPCEDPCDVSKM-SRAYELVAIDALPTKIGTRGSVDV 231
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK----EAETFDASNKPV 118
L EL ++ K++ RDITL+D ++ +V++TLWG+ + E V
Sbjct: 232 LACVAAVGELRAIRRKSDDSEVQVRDITLLDDTKKTVSLTLWGELATEQGERLANEIGAV 291
Query: 119 IAVKAARVSEFQGGKTLSLSMSSVLSLNP---DIP-ECHKLQGWFSTQTNT-----RFEP 169
+A++ RV+++ G +LS S L + P DI + L+ W++ + +T
Sbjct: 292 VALRGLRVTDYNG-VSLSTVQRSELIVEPSGDDIAAKADALRAWYAAEGSTAETTAAGAG 350
Query: 170 VSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRG---IIQVFRGSNTTYKACPS 226
++ GG G GA + ++ Q + L + G ++ V Y ACP
Sbjct: 351 LATARGGAGAGAPAQRVDLKAFQPELLPPATNKYEVGILGCATVVLVKPDQPMYYCACPE 410
Query: 227 QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVT 286
+ NKKV++++ G + CE K +++ R IL + + D WV +F +A +LG
Sbjct: 411 EGNNKKVVEESPGKWYCEATQKTYDSCRRRYILRLKVSDHAGGGWVNVFHEQACQMLGCD 470
Query: 287 AQEVGESTEDHPA-----LKKALFTQYIFRLRAKLEHYNGTKK 324
A+E+ E +PA +K A F + +L++K E Y G +K
Sbjct: 471 AEELHALRESNPAAYERKVKAAQFKPWGLKLKSKTEEYQGEQK 513
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
Y ACP + NKKV++++ G + CE K +++ R IL + + D WV +F +A
Sbjct: 405 YCACPEEGNNKKVVEESPGKWYCEATQKTYDSCRRRYILRLKVSDHAGGGWVNVFHEQAC 464
Query: 746 SILGVTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKLEHYN 785
+LG A+E+ E +PA +K A F + +L++K E Y
Sbjct: 465 QMLGCDAEELHALRESNPAAYERKVKAAQFKPWGLKLKSKTEEYQ 509
>gi|449015647|dbj|BAM79049.1| probable replication protein A [Cyanidioschyzon merolae strain 10D]
Length = 663
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 174/357 (48%), Gaps = 54/357 (15%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
+L QLN + G L + +IV++ Y + V +R V II+ L I++ +
Sbjct: 64 VLMAQLNSFVLSGDLDKGSIVRLVDYQPNKVQ-----DRVVAIIINLEILERNAPT---V 115
Query: 396 GNPQPLN----TNTDNSSTQQTPAATNTNG-----SNGVHNNVAIPR------------- 433
GNP+ + T+T SS +T T S GV + PR
Sbjct: 116 GNPKAFDPRASTDTALSSHSFDDDSTETARKRQAVSAGVEHKPPPPRVTPGAPPVSVPPP 175
Query: 434 ---QASAPVVQTH-----------------PIVSLSPYQNKWTIKARVTNKTPIREWNNA 473
A+ PVV+ I + +PYQN I+ RV K +R ++NA
Sbjct: 176 VKSAAAGPVVRFDQGLGSSVETLAPPGGYTKISAANPYQNNVIIRGRVVQKGELRTYSNA 235
Query: 474 RGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINND 533
+G GKLFS ++ DE+G +R T F ++ H IE + +Y I+ +LKPAN +F+ +
Sbjct: 236 KGEGKLFSFEIADETGNMRVTAFREKALEAHQRIELNGIYSIAGASLKPANAQFNHTGHS 295
Query: 534 YEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVT 593
+EM ++ + +D + + V + FV ++ + ++ + +DV+G+ +D E+ ++
Sbjct: 296 FEMILDQNSVITQLPDDNM--IQRVSFDFVKIRDLMDVPVGKVVDVIGIALDIGEVGEIS 353
Query: 594 GKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF--DASNKPVIAVKAARVSEFQG 648
KT KR++ L+D + SV +T+WG+ A + + ++PV+ VK+A+ +F G
Sbjct: 354 SKTTGLPVAKREVKLIDDTGCSVALTIWGERARSLFSNEDDRPVLLVKSAKRGDFNG 410
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 173/339 (51%), Gaps = 34/339 (10%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PAN +F+ + +EM ++ + +D + + V + FV ++ + ++ + +DV+G
Sbjct: 284 PANAQFNHTGHSFEMILDQNSVITQLPDDNM--IQRVSFDFVKIRDLMDVPVGKVVDVIG 341
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF--DASNKPVIAVK 122
+ +D E+ ++ KT KR++ L+D + SV +T+WG+ A + + ++PV+ VK
Sbjct: 342 IALDIGEVGEISSKTTGLPVAKREVKLIDDTGCSVALTIWGERARSLFSNEDDRPVLLVK 401
Query: 123 AARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTN-TRFEPVSQRTGGMGGGA 181
+A+ +F G +LS + SS + +NP+I E +L+GWF ++ + F Q GG G
Sbjct: 402 SAKRGDFN-GVSLSTTPSSHVEVNPNIREAFELRGWFDSEGHGAEF----QDLGGTPLGG 456
Query: 182 AGNLLLMR--------EIQDQQLG----MGDKADYCSVRGIIQVFRGSNTT---YKACPS 226
A +R ++Q + +G A Y +VR I + Y +CP
Sbjct: 457 ARTESRIRNSERKTFAQVQSEHIGEDPHSAPGASYYTVRATISHIKQDEERPPWYLSCP- 515
Query: 227 QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL-GV 285
DC KKVI+++ MYRCE+C+K T R I + D T S W+ + I G
Sbjct: 516 -DCKKKVIEESPDMYRCERCDKLVKP-TPRYIFSIQAMDATGSHWLNCYDEVGPIIFGGY 573
Query: 286 TAQEVG-----ESTEDHPALKKALFTQYIFRLRAKLEHY 319
+A+E+ +S E L++A F +++FR+R + + Y
Sbjct: 574 SAEELKRIKETDSEEYQRILEQAHFGEFLFRVRVRSDTY 612
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 16/143 (11%)
Query: 655 EIQDQQLG----MGDKADYCSVRGIIQVFRGSNTT---YKACPSQDCNKKVIDQNNGMYR 707
++Q + +G A Y +VR I + Y +CP DC KKVI+++ MYR
Sbjct: 473 QVQSEHIGEDPHSAPGASYYTVRATISHIKQDEERPPWYLSCP--DCKKKVIEESPDMYR 530
Query: 708 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL-GVTAQEVG-----ESTED 761
CE+C+K T R I + D T S W+ + I G +A+E+ +S E
Sbjct: 531 CERCDKLVKP-TPRYIFSIQAMDATGSHWLNCYDEVGPIIFGGYSAEELKRIKETDSEEY 589
Query: 762 HPALKKALFTQYIFRLRAKLEHY 784
L++A F +++FR+R + + Y
Sbjct: 590 QRILEQAHFGEFLFRVRVRSDTY 612
>gi|123477451|ref|XP_001321893.1| OB-fold nucleic acid binding domain containing protein [Trichomonas
vaginalis G3]
gi|121904728|gb|EAY09670.1| OB-fold nucleic acid binding domain containing protein [Trichomonas
vaginalis G3]
Length = 568
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 128/512 (25%), Positives = 214/512 (41%), Gaps = 95/512 (18%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
A L + N I G L +FTI++I +Y +S IIL I+ ++I
Sbjct: 58 AFLHSHFNKYIDSGRLKQFTIIKITKY-----TSKIFGLHHSFIILGFEILD--SQIDHI 110
Query: 395 IGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNK 454
IG+P+ +++ +N ++ Q P V H + LSPY
Sbjct: 111 IGDPKQISSQPENQRLSES--------------------QPCVPEV-FHLLTDLSPYILN 149
Query: 455 WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNRFHDMIEKDKVY 513
W+IKARVT K+PI+ + G + FS+ L D +G EI A ++ + RF+D++ + VY
Sbjct: 150 WSIKARVTRKSPIKTFRAVNGQRRSFSVVLKDTTGTEIEAVFYDGDLERFYDLLVLENVY 209
Query: 514 YISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISP 573
SN + + K+ NDY + F +I ++G++ + Y ++ L I P
Sbjct: 210 CFSNGIVVQNSNKYGYTANDYTIKFGSRAKIIEV--PDLGDIGFLSYNYMKLADIVVHKP 267
Query: 574 DENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNK 633
+ +D LGV + + K + KR + L DQS + +TLW +A+ F + K
Sbjct: 268 -KIVDFLGVVTQIYPVEKIDSKY-RTNISKRSVELCDQSNLLIDLTLWDDQADNFPENGK 325
Query: 634 PVIAVKAARVSEFQG--------------------------------------------- 648
V+++K AR+S ++G
Sbjct: 326 FVLSLKGARISTYRGVSLTALSTTLIDTNPSGEMPDNLRKWFENAKSSVMDMEKVSRSGT 385
Query: 649 ---NLLLMRE---IQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCN-KKVIDQ 701
LL ++E + D G +C + I V R Y ACP+ C K +
Sbjct: 386 FASPLLDLKEASQVYDSFKGESFYHSFCGMVIDISVIR--KLYYCACPNPHCRGKGLYSP 443
Query: 702 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNE--AESILGVTAQEVGEST 759
+Y CE+C++ +R ++I D T S+ V+L N+ E I+G + + T
Sbjct: 444 EPDLYLCERCHQRVEHPRHRYAFSMVIADHTGSIRVSLLGNDILGEKIIGRKIDDWVQET 503
Query: 760 ED------HPALKKALFTQYIFRLRAKLEHYN 785
+D L F + +LR KL+ +N
Sbjct: 504 KDLTDIQIRTLLCPVFFNFFKLKLRTKLDTFN 535
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 90/352 (25%), Positives = 155/352 (44%), Gaps = 25/352 (7%)
Query: 9 KFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCID 68
K+ NDY + F +I ++G++ + Y ++ L I P + +D LGV
Sbjct: 222 KYGYTANDYTIKFGSRAKIIEV--PDLGDIGFLSYNYMKLADIVVHKP-KIVDFLGVVTQ 278
Query: 69 AAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSE 128
+ + K + KR + L DQS + +TLW +A+ F + K V+++K AR+S
Sbjct: 279 IYPVEKIDSKY-RTNISKRSVELCDQSNLLIDLTLWDDQADNFPENGKFVLSLKGARIST 337
Query: 129 FQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLM 188
++G +LS ++++ NP L+ WF N + + G A LL +
Sbjct: 338 YRGVSLTALS-TTLIDTNPSGEMPDNLRKWFE---NAKSSVMDMEKVSRSGTFASPLLDL 393
Query: 189 RE---IQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCN-KKVIDQNNGMYRCE 244
+E + D G +C + I V R Y ACP+ C K + +Y CE
Sbjct: 394 KEASQVYDSFKGESFYHSFCGMVIDISVIR--KLYYCACPNPHCRGKGLYSPEPDLYLCE 451
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNE--AESILGVTAQEVGESTED------ 296
+C++ +R ++I D T S+ V+L N+ E I+G + + T+D
Sbjct: 452 RCHQRVEHPRHRYAFSMVIADHTGSIRVSLLGNDILGEKIIGRKIDDWVQETKDLTDIQI 511
Query: 297 HPALKKALFTQYIFRLRAKLEHYNGTKKIPDGV---NINSFAMLATQLNDII 345
L F + +LR KL+ +N ++ V + SF A Q+ +II
Sbjct: 512 RTLLCPVFFNFFKLKLRTKLDTFNAETRVKTSVFQGDRLSFGDAALQIANII 563
>gi|357459135|ref|XP_003599848.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
gi|355488896|gb|AES70099.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
Length = 813
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 109/335 (32%), Positives = 167/335 (49%), Gaps = 49/335 (14%)
Query: 324 KIPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELN 383
K+ DGV +S A +A QLND + G + E +IV++ Y+ + R ++I+ ++
Sbjct: 46 KLSDGVYSHS-ATIAAQLNDGVGTGRVKEGSIVKLLDYVCPTI-----VIRKIIIVHKME 99
Query: 384 IIKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTH 443
I ++I IGNP+ + P N P+
Sbjct: 100 TIVLDSQI---IGNPKSF-------VDPELPMVEN-----------------EEPI---- 128
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNR 502
PI +L PY+ KW IKARVT+K +R +N+ G K FS D+LD + GE++ T ND +
Sbjct: 129 PIAALHPYKGKWAIKARVTSKGHLRHYNSPEGYLKAFSFDVLDSDGGEVQVTCLNDVIDS 188
Query: 503 FHDMIEKDKVYYISNCTLKP-ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC 561
F+++IE KVY IS L P +K + D+E+ ++TV C DE G++P K+
Sbjct: 189 FYEVIEVGKVYLISKAGLIPVGSKDLKHLKIDWEIMLNSNSTVELC-PDEDGSIPMHKFS 247
Query: 562 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
F + I I + +DV+GV + + S + + N KR + L D S SV +TLW
Sbjct: 248 FRSISDIENIESNTILDVIGV-VTSVNSSVLMSRENALEMRKRILNLKDNSGRSVELTLW 306
Query: 622 G----KEAETF----DASNKPVIAVKAARVSEFQG 648
G +E + DA PV+AVKA +V EF+G
Sbjct: 307 GELCNREGQELKDIVDAGGFPVLAVKAGKVIEFRG 341
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/346 (30%), Positives = 160/346 (46%), Gaps = 33/346 (9%)
Query: 2 LAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENID 61
L +K + D+E+ ++TV C DE G++P K+ F + I I + +D
Sbjct: 206 LIPVGSKDLKHLKIDWEIMLNSNSTVELC-PDEDGSIPMHKFSFRSISDIENIESNTILD 264
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEAETF----DA 113
V+GV + + S + + N KR + L D S SV +TLWG +E + DA
Sbjct: 265 VIGV-VTSVNSSVLMSRENALEMRKRILNLKDNSGRSVELTLWGELCNREGQELKDIVDA 323
Query: 114 SNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQR 173
PV+AVKA +V EF+G K+++ S L +NPD PE L+ WF +
Sbjct: 324 GGFPVLAVKAGKVIEFRG-KSINAIPISRLFVNPDFPEAQSLRLWFDQDGKDSASSSISK 382
Query: 174 TGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP-------- 225
GG + +I+D+ LG DK D+ + R I + Y ACP
Sbjct: 383 DISYGGPKNELRKTVSQIKDEGLGCTDKPDWITTRATISFMKTDVFCYTACPVMIGDRRC 442
Query: 226 -------SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNE 278
+ C+KKV N ++C+ CN+EF+ YR IL I D T VT F
Sbjct: 443 NKKVTRSGERCSKKVTKTVNTRWKCDTCNQEFDVCEYRYILQAQIVDHTGLTCVTAFNEA 502
Query: 279 AESILGVTAQEV----GESTED---HPALKKALFTQYIFRLRAKLE 317
E I+G +A+++ E +D +K LF Q++FRL+ + E
Sbjct: 503 GEDIMGYSAKDLYVLKYEQEDDERFRDIIKSILFNQFVFRLKIQKE 548
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 22/150 (14%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP---------------SQDCNKKVI 699
+I+D+ LG DK D+ + R I + Y ACP + C+KKV
Sbjct: 399 QIKDEGLGCTDKPDWITTRATISFMKTDVFCYTACPVMIGDRRCNKKVTRSGERCSKKVT 458
Query: 700 DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV---- 755
N ++C+ CN+EF+ YR IL I D T VT F E I+G +A+++
Sbjct: 459 KTVNTRWKCDTCNQEFDVCEYRYILQAQIVDHTGLTCVTAFNEAGEDIMGYSAKDLYVLK 518
Query: 756 GESTED---HPALKKALFTQYIFRLRAKLE 782
E +D +K LF Q++FRL+ + E
Sbjct: 519 YEQEDDERFRDIIKSILFNQFVFRLKIQKE 548
>gi|221507849|gb|EEE33436.1| replication factor, putative [Toxoplasma gondii VEG]
Length = 458
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 130/213 (61%), Gaps = 8/213 (3%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
P+ L+ Y KWTI+ARV K IR++N ARG G+LF+++L D+ GEIRAT FN +++
Sbjct: 8 PLKDLTAYVAKWTIRARVDVKGDIRKYNGARGPGQLFNVELKDKDGEIRATFFNAAVDKW 67
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVG-NMPSVKYC- 561
++++++ KVYY ++KP N +F+ +DYE++F ++++ E E G ++PS+
Sbjct: 68 YNILQEGKVYYFRGGSVKPKNPRFNHTRHDYELTFDEKSSIV---EAESGADIPSISRAD 124
Query: 562 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
V ++ I E + + ++ + D + S+T K+ + KRD+ LVD+ S+ +TLW
Sbjct: 125 LVDIRGIEEKEVNSTVSLIAIVHDYRPIQSITIKSTGQQKPKRDVFLVDEGGRSLVLTLW 184
Query: 622 GKEAETFDAS---NKPVIAVKAARVSEFQGNLL 651
G++ ET KP++ +K+ +V ++ G L
Sbjct: 185 GEKTETLPEEQLCQKPLVLLKSVKVGDWNGRKL 217
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 160/339 (47%), Gaps = 33/339 (9%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVG-NMPSVKYC-FVPLKTIAEISPDENIDV 62
P N +F+ +DYE++F ++++ E E G ++PS+ V ++ I E + + +
Sbjct: 86 PKNPRFNHTRHDYELTFDEKSSIV---EAESGADIPSISRADLVDIRGIEEKEVNSTVSL 142
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS---NKPVI 119
+ + D + S+T K+ + KRD+ LVD+ S+ +TLWG++ ET KP++
Sbjct: 143 IAIVHDYRPIQSITIKSTGQQKPKRDVFLVDEGGRSLVLTLWGEKTETLPEEQLCQKPLV 202
Query: 120 AVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGG 179
+K+ +V ++ G K L S+ + L PD ++Q W++ + + R S GG+
Sbjct: 203 LLKSVKVGDWNGRK-LDSQGSTRVELFPDGNRAAEVQDWWNQEGSRRGSFASLSGGGL-- 259
Query: 180 GAAGNLLLMREI--------QDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNK 231
A G +++ + Q + + DK Y + +++ ++ ACP DC K
Sbjct: 260 -AVGRKEILKSLEQVAQEAAQAEAAVLSDKGVYATSCALLERIGDDRFSWPACP--DCRK 316
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG 291
K+ ++ ++C C K+ + +L + + D T S+ + +AE + T E
Sbjct: 317 KMNEEMPRCWQCPSCRKQCEQPNHTYMLNLSLMDLTGSLRCSCIGEKAEEFMANTKAETV 376
Query: 292 ESTEDHPALKK-----------ALFTQYIFRLRAKLEHY 319
+H AL + A ++IFR+ +K + +
Sbjct: 377 LLLAEHRALDEQGRSFQDIFADANLEEWIFRICSKYDSW 415
Score = 40.4 bits (93), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 13/133 (9%)
Query: 663 MGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRL 722
+ DK Y + +++ ++ ACP DC KK+ ++ ++C C K+ +
Sbjct: 285 LSDKGVYATSCALLERIGDDRFSWPACP--DCRKKMNEEMPRCWQCPSCRKQCEQPNHTY 342
Query: 723 ILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKK-----------ALFT 771
+L + + D T S+ + +AE + T E +H AL + A
Sbjct: 343 MLNLSLMDLTGSLRCSCIGEKAEEFMANTKAETVLLLAEHRALDEQGRSFQDIFADANLE 402
Query: 772 QYIFRLRAKLEHY 784
++IFR+ +K + +
Sbjct: 403 EWIFRICSKYDSW 415
>gi|47227766|emb|CAG08929.1| unnamed protein product [Tetraodon nigroviridis]
Length = 193
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 93/151 (61%), Gaps = 5/151 (3%)
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
N + +++ + LG G+KADY + I R N Y+ACPSQDCNKKV+DQ NGM+RC
Sbjct: 20 NWKTLADVKSEHLGHGEKADYYTCIATIVFLRKENCLYQACPSQDCNKKVVDQQNGMFRC 79
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA---- 299
EKC+KEF F YRLIL I D+ ++ WVT FQ AE+ILG A +G+ E + A
Sbjct: 80 EKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKESNEAAFNE 139
Query: 300 -LKKALFTQYIFRLRAKLEHYNGTKKIPDGV 329
++A F +IFR R KLE YN +I V
Sbjct: 140 VFQQANFNSFIFRSRVKLETYNDESRIKATV 170
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 90/142 (63%), Gaps = 5/142 (3%)
Query: 649 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 708
N + +++ + LG G+KADY + I R N Y+ACPSQDCNKKV+DQ NGM+RC
Sbjct: 20 NWKTLADVKSEHLGHGEKADYYTCIATIVFLRKENCLYQACPSQDCNKKVVDQQNGMFRC 79
Query: 709 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA---- 764
EKC+KEF F YRLIL I D+ ++ WVT FQ AE+ILG A +G+ E + A
Sbjct: 80 EKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKESNEAAFNE 139
Query: 765 -LKKALFTQYIFRLRAKLEHYN 785
++A F +IFR R KLE YN
Sbjct: 140 VFQQANFNSFIFRSRVKLETYN 161
>gi|290982322|ref|XP_002673879.1| replication protein A1, 70 kDa-like protein [Naegleria gruberi]
gi|284087466|gb|EFC41135.1| replication protein A1, 70 kDa-like protein [Naegleria gruberi]
Length = 691
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/429 (25%), Positives = 196/429 (45%), Gaps = 79/429 (18%)
Query: 398 PQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPV-----VQTHPIVSLSPYQ 452
PQP T T+++ QQ N + NN PRQ+ V Q P+V ++P+
Sbjct: 195 PQPQQTATNSNPVQQRNQQQTFNRPSNPTNNA--PRQSVGNVGPLKTKQILPLVGITPWV 252
Query: 453 NKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNRFHDMIEKDK 511
+ W IK RVT K +++W+N G LFS++L+DE G EIRAT F N+F+D I++ K
Sbjct: 253 SDWVIKVRVTKKGELKKWSNPTKEGHLFSLELIDEDGVEIRATFF---TNKFYDHIKESK 309
Query: 512 VYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI 571
VY++ K A+KK+S + + YE++F ++ + +D+ N+P + F+P + + I
Sbjct: 310 VYFMKGGKAKSADKKYSRLPHSYELTFYDNSVIEEAEDDQAKNIPQGHFEFIPFEQLKTI 369
Query: 572 SPDENIDVLGVCIDAAELSSVTGKTNQ------KTYMKRDITLVDQSQ----ASVTMTLW 621
+D++GV +T K+ Q K KR++ L+++ +TLW
Sbjct: 370 EKKNGVDIVGVVKSIGNSEQMTIKSKQDPNAIEKQTTKRELILINKDNDGNIYEAAITLW 429
Query: 622 GKEAETFDASNKPVIAV---------------------------KAARVSEFQGNL---- 650
G++ +F+ + + ++ RV E NL
Sbjct: 430 GEDNISFNIGDTVIFTALTIKEFKGGVKLSTSKSTKILTNFDLPESRRVMEQFANLETPI 489
Query: 651 -----LLMREIQD----QQLGMGD--------------KADYCSVRGIIQVFRGSNTTYK 687
+L+ I+ ++ + D K+ +R +F+ N TY
Sbjct: 490 EEIKGVLLSAIESSGSFKKYSLEDLDTVRVQDLEQEKFKSKTFFIRSHFSLFKDGNLTYC 549
Query: 688 ACPSQDCNKKVI--DQNNGMYRCEKCNKEFN--TFTYRLILPVMIGDWTNSVWVTLFQNE 743
AC +++C K + D+ + Y C CN +++ T ++ + V++GD T + +T F
Sbjct: 550 ACVNEECKSKKLKRDEMDNSYTCPLCNTKYDETTAAHKYMTSVVLGDHTCTKTLTAFDKG 609
Query: 744 AESILGVTA 752
+LGV A
Sbjct: 610 MTLLLGVPA 618
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 147/307 (47%), Gaps = 28/307 (9%)
Query: 3 AAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDV 62
A A+KK+S + + YE++F ++ + +D+ N+P + F+P + + I +D+
Sbjct: 318 AKSADKKYSRLPHSYELTFYDNSVIEEAEDDQAKNIPQGHFEFIPFEQLKTIEKKNGVDI 377
Query: 63 LGVCIDAAELSSVTGKTNQ------KTYMKRDITLVDQSQ----ASVTMTLWGKEAETFD 112
+GV +T K+ Q K KR++ L+++ +TLWG++ +F+
Sbjct: 378 VGVVKSIGNSEQMTIKSKQDPNAIEKQTTKRELILINKDNDGNIYEAAITLWGEDNISFN 437
Query: 113 ASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS- 171
+ + A + EF+GG LS S S+ + N D+PE ++ F+ T E +
Sbjct: 438 IGD--TVIFTALTIKEFKGGVKLSTSKSTKILTNFDLPESRRVMEQFAN-LETPIEEIKG 494
Query: 172 ------QRTGGMGGGAAGNLLLMREIQD-QQLGMGDKADYCSVRGIIQVFRGSNTTYKAC 224
+ +G + +L +R +QD +Q K + +R +F+ N TY AC
Sbjct: 495 VLLSAIESSGSFKKYSLEDLDTVR-VQDLEQEKFKSKTFF--IRSHFSLFKDGNLTYCAC 551
Query: 225 PSQDCNKKVI--DQNNGMYRCEKCNKEFN--TFTYRLILPVMIGDWTNSVWVTLFQNEAE 280
+++C K + D+ + Y C CN +++ T ++ + V++GD T + +T F
Sbjct: 552 VNEECKSKKLKRDEMDNSYTCPLCNTKYDETTAAHKYMTSVVLGDHTCTKTLTAFDKGMT 611
Query: 281 SILGVTA 287
+LGV A
Sbjct: 612 LLLGVPA 618
>gi|21465964|pdb|1L1O|C Chain C, Structure Of The Human Replication Protein A (Rpa)
Trimerization Core
gi|21465967|pdb|1L1O|F Chain F, Structure Of The Human Replication Protein A (Rpa)
Trimerization Core
Length = 181
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 93/156 (59%), Gaps = 5/156 (3%)
Query: 179 GGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNN 238
GG+ N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ N
Sbjct: 1 GGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQN 60
Query: 239 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH- 297
G+YRCEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG A +GE + +
Sbjct: 61 GLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNE 120
Query: 298 ----PALKKALFTQYIFRLRAKLEHYNGTKKIPDGV 329
+ A F +IFR+R K+E YN +I V
Sbjct: 121 QAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATV 156
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/142 (47%), Positives = 87/142 (61%), Gaps = 5/142 (3%)
Query: 649 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 708
N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YRC
Sbjct: 6 NWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRC 65
Query: 709 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----P 763
EKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG A +GE + +
Sbjct: 66 EKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEE 125
Query: 764 ALKKALFTQYIFRLRAKLEHYN 785
+ A F +IFR+R K+E YN
Sbjct: 126 VFQNANFRSFIFRVRVKVETYN 147
>gi|145514786|ref|XP_001443298.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124410676|emb|CAK75901.1| unnamed protein product [Paramecium tetraurelia]
Length = 632
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 130/492 (26%), Positives = 220/492 (44%), Gaps = 102/492 (20%)
Query: 382 LNIIKPG--TEIGF-KIGNPQPLNTNTDNSSTQQTPAATNTN-------GSNGVHNNVAI 431
LN P TEI F K + LN+N S QQ TN N G + V ++
Sbjct: 119 LNYTNPNGNTEIQFAKAPHTLQLNSNKKQSILQQQQKQTNENVNADQQQGKSAVKLSIQQ 178
Query: 432 PRQASAPVVQT--HP------------IVSLSPYQNKWTIKARVTNKTPIREWNNARGSG 477
+Q S P +Q H I L P + IK R+T+K+ ++ + G G
Sbjct: 179 KQQQSRPAIQKIEHKTEYAPSDQNLLKITELYPGMRGFKIKGRITSKSDKTQFKS--GKG 236
Query: 478 KLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSIN---ND 533
+LFSI+++D E I+ FN++C++F+D+I+ KVYY N +K ++SS N ++
Sbjct: 237 QLFSIEIIDSEKSTIQGVFFNNQCDKFYDLIDLGKVYYFENGQVKT--NRYSSKNQNQSE 294
Query: 534 YEMSFTHSTTVIPCNED-EVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSV 592
Y++ F ++ + ED E+ P + + I +S D+ D+LGV + L+ V
Sbjct: 295 YQIHFEEASKISEALEDKEIDAFP---FQIKQIGDIDNLSQDDKCDILGVITEVKPLTQV 351
Query: 593 TGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQ----- 647
T K+N+ K++ITL DQ+Q + + LWG +AE + ++A + +V+++Q
Sbjct: 352 TTKSNENK-AKKNITLFDQTQRGIDIVLWGAQAEKWQFQKDEIVAFRGLKVTDYQTIRSL 410
Query: 648 ---------GNLLLMREIQDQQLGMGDKADYCS---------------------VRGIIQ 677
+L +++I G D D+ S + I +
Sbjct: 411 TVTNSTTYEKDLTKLQKIN----GFQDFYDFYSQNKDFIESKPKESKKKFALSYIEQIKK 466
Query: 678 VFRGSNTT---------------------YKACPSQDCNKKVI-DQNNGMYRCEKCNKEF 715
F G Y+ C C +KV+ Q+ + C+ CN+ F
Sbjct: 467 DFEGQRNNKLTKFYEVRAYITTIFTKLLYYEGCDI--CKRKVVLVQSTKQFFCQNCNQNF 524
Query: 716 NTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE--VGESTEDHPALKKALFTQY 773
N +Y+ I I D T ++ V++ ++ +SIL ++ E E + +K+A F QY
Sbjct: 525 NKPSYKYIFNAKIADTTGNLPVSVSNDQGQSILKLSCDEFKAKEKNQQDEIIKRASFQQY 584
Query: 774 IFRLRAKLEHYN 785
F + K+E YN
Sbjct: 585 RFLIIGKMETYN 596
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 158/324 (48%), Gaps = 23/324 (7%)
Query: 9 KFSSIN---NDYEMSFTHSTTVIPCNED-EVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
++SS N ++Y++ F ++ + ED E+ P + + I +S D+ D+LG
Sbjct: 284 RYSSKNQNQSEYQIHFEEASKISEALEDKEIDAFP---FQIKQIGDIDNLSQDDKCDILG 340
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V + L+ VT K+N+ K++ITL DQ+Q + + LWG +AE + ++A +
Sbjct: 341 VITEVKPLTQVTTKSNENK-AKKNITLFDQTQRGIDIVLWGAQAEKWQFQKDEIVAFRGL 399
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGW-----FSTQTNTRFEPVSQRTGGMGG 179
+V+++Q ++L+++ S+ + D+ + K+ G+ F +Q N F +
Sbjct: 400 KVTDYQTIRSLTVTNST--TYEKDLTKLQKINGFQDFYDFYSQ-NKDFIESKPKESKKKF 456
Query: 180 GAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVI-DQNN 238
+ + ++ + Q+ K + VR I Y+ C C +KV+ Q+
Sbjct: 457 ALSYIEQIKKDFEGQRNNKLTK--FYEVRAYITTIFTKLLYYEGCDI--CKRKVVLVQST 512
Query: 239 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE--VGESTED 296
+ C+ CN+ FN +Y+ I I D T ++ V++ ++ +SIL ++ E E +
Sbjct: 513 KQFFCQNCNQNFNKPSYKYIFNAKIADTTGNLPVSVSNDQGQSILKLSCDEFKAKEKNQQ 572
Query: 297 HPALKKALFTQYIFRLRAKLEHYN 320
+K+A F QY F + K+E YN
Sbjct: 573 DEIIKRASFQQYRFLIIGKMETYN 596
>gi|340059107|emb|CCC53482.1| putative replication factor A, 51kDa subunit, fragment, partial
[Trypanosoma vivax Y486]
Length = 317
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 124/209 (59%), Gaps = 2/209 (0%)
Query: 441 QTHPIVSLSPY-QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE 499
Q PI SL+P+ +KW I+ARVT+K+ +R WN GKLFS L+DES IRAT+FND
Sbjct: 8 QFQPIDSLTPFLGSKWWIRARVTDKSDVRRWNKPTSQGKLFSFTLIDESASIRATVFNDA 67
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK 559
+ F +I +VYY+ +K AN+KFS++NNDYE++F ++ + + +P +
Sbjct: 68 VDIFDPLIVNGQVYYLGGGQVKNANRKFSNVNNDYEVTFDSTSQISIAQDSGSSLLPMQR 127
Query: 560 YCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
Y FVP+ + + +DVL V +L+++T K+ + +KR++ + D S ASV +T
Sbjct: 128 YNFVPIGILKKREVGSLVDVLVVVHSVDDLTTITQKSTGRELVKRNVRVCD-STASVDVT 186
Query: 620 LWGKEAETFDASNKPVIAVKAARVSEFQG 648
LW EA + V+A++ +V F G
Sbjct: 187 LWNDEARNWTFGQGTVLAIRQLKVGNFDG 215
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 113/227 (49%), Gaps = 9/227 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN+KFS++NNDYE++F ++ + + +P +Y FVP+ + + +DVL V
Sbjct: 91 ANRKFSNVNNDYEVTFDSTSQISIAQDSGSSLLPMQRYNFVPIGILKKREVGSLVDVLVV 150
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+L+++T K+ + +KR++ + D S ASV +TLW EA + V+A++ +
Sbjct: 151 VHSVDDLTTITQKSTGRELVKRNVRVCD-STASVDVTLWNDEARNWTFGQGTVLAIRQLK 209
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRT---GGMGGGAA 182
V F G +LS + S +NP+I + KL W+ + +S T GG+GG
Sbjct: 210 VGNFD-GVSLSSTSQSSFDVNPNIADTKKLAEWYISTGGRDVVSLSSLTSAAGGVGGSTL 268
Query: 183 G----NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP 225
G +I + LG G + DY VR + + Y ACP
Sbjct: 269 GEGYRGYKYFDDIAVEGLGRGPRPDYVDVRCTPVYLKQDSQWYDACP 315
>gi|335748685|gb|AEH58815.1| replication protein A large subunit [Karenia brevis]
Length = 458
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 125/212 (58%), Gaps = 10/212 (4%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGS---GKLFSIDLLD-ESGEIRATMFNDE 499
PI LS Y+ KWTIK RVTNK P+R +N +GS GK+F ++LLD E GEIRA+ FND
Sbjct: 8 PIAELSTYRTKWTIKGRVTNKGPLRTFNK-QGSATQGKVFHVELLDAEGGEIRASFFNDA 66
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK 559
+R +++E K + +S ++ ANK+++ ++ YE+ F + P +D ++ ++K
Sbjct: 67 ADRLFNVLEPGKCFTLSKGQIRVANKQYNPTSHRYELIFDREAIIEPATDD--ASINAIK 124
Query: 560 YCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
+ F LK +A +ID+ GV +S TGK Q+ KR+I + D S S+++T
Sbjct: 125 FSFTNLKAVASRQLPCSIDICGVITSFTAPASRTGKDGQE-LTKREIQVADDSGTSISVT 183
Query: 620 LWGKEAETFDAS--NKPVIAVKAARVSEFQGN 649
LWG A+ D + +P +A+K V E+QG
Sbjct: 184 LWGXRAKQEDKNFEGQPTVALKGVLVKEWQGG 215
Score = 122 bits (305), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 161/344 (46%), Gaps = 36/344 (10%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+++ ++ YE+ F + P +D ++ ++K+ F LK +A +ID+ GV
Sbjct: 90 ANKQYNPTSHRYELIFDREAIIEPATDD--ASINAIKFSFTNLKAVASRQLPCSIDICGV 147
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS--NKPVIAVKA 123
+S TGK Q+ KR+I + D S S+++TLWG A+ D + +P +A+K
Sbjct: 148 ITSFTAPASRTGKDGQE-LTKREIQVADDSGTSISVTLWGXRAKQEDKNFEGQPTVALKG 206
Query: 124 ARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRTGGMGGGAA 182
V E+QGG+ SL S L P +PE ++Q W+S + + F +SQ TGG G A
Sbjct: 207 VLVKEWQGGRQGSLLQSGTLQFKPAMPEAQRVQQWWSQGGSAQSFADLSQTTGGGGESAR 266
Query: 183 GN------LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNT---TYKAC--PSQD--- 228
+ MR ++ L + + ++Q+ + Y AC P +
Sbjct: 267 SRNAKPMTIAGMRAAAERLLDQVEIYNVVCRLALVQLRKQGEIQPLQYLACQEPKEGNGL 326
Query: 229 -CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA 287
CN++V + C CN+ T RL + D + W+T F A+ IL +T
Sbjct: 327 PCNRRV----DASGFCATCNRAGKT-APRLTVRCRFVDCEDQAWLTTFHEPAQRILDMTG 381
Query: 288 QEV---------GESTEDHPALKKALF-TQYIFRLRAKLEHYNG 321
EV G + ++++ F T + +RAK++ YNG
Sbjct: 382 DEVRALELLEEEGGREKLEASIRQRYFATPFTVTVRAKMDSYNG 425
>gi|303276565|ref|XP_003057576.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460233|gb|EEH57527.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 835
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 120/216 (55%), Gaps = 14/216 (6%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNR 502
PI SL+PY N+WTI+ARVTN IR ++N +G GK+F+++LLD E GEI+A F D R
Sbjct: 228 PISSLNPYNNRWTIRARVTNNPEIRTYHNHKGDGKVFNVELLDAEGGEIKAVAFGDTAER 287
Query: 503 FHDMIEKDKVYYISNCTLKPA-NKKFSSINNDYEMSFTHSTTVIPCNEDE-VGNMPSVKY 560
F D+ VY +S ++P N KFS ++EM H+T V ++ VG++ V Y
Sbjct: 288 FADVFRAGSVYELSKGQIRPVRNPKFSV--GEFEMMLDHNTEVREIDDPAVVGSIKRVNY 345
Query: 561 CFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTL 620
F + + IS +DV V EL+++ + +T KR ITL D S AS+ +TL
Sbjct: 346 AFKKIADVDHISSGSLVDVCAVVHHVGELNTIMKRDGGET-SKRSITLRDDSGASIELTL 404
Query: 621 WGKEAETFDA--------SNKPVIAVKAARVSEFQG 648
W +A + PVIA+K RV +FQG
Sbjct: 405 WAPQALDIGGRLEGLVNDGDHPVIAIKNGRVGDFQG 440
Score = 108 bits (271), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 94/343 (27%), Positives = 163/343 (47%), Gaps = 28/343 (8%)
Query: 7 NKKFSSINNDYEMSFTHSTTVIPCNEDEV-GNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
N KFS ++EM H+T V ++ V G++ V Y F + + IS +DV V
Sbjct: 310 NPKFSV--GEFEMMLDHNTEVREIDDPAVVGSIKRVNYAFKKIADVDHISSGSLVDVCAV 367
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA--------SNKP 117
EL+++ + +T KR ITL D S AS+ +TLW +A + P
Sbjct: 368 VHHVGELNTIMKRDGGET-SKRSITLRDDSGASIELTLWAPQALDIGGRLEGLVNDGDHP 426
Query: 118 VIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGG 176
VIA+K RV +FQG K + SS + +NPD+ E +L+ W+ T T + S
Sbjct: 427 VIAIKNGRVGDFQG-KNIGTINSSRVDINPDVDEAARLRHWYDTGGATAEVKAFSGAGAS 485
Query: 177 MGGGAAGNLLLMREIQDQQLGMG-DKADYCSVRGIIQVFRGSNTT--YKACPSQD----C 229
GGG + + +++++ G A + R + + S+ Y ACP ++ C
Sbjct: 486 GGGGRGDRCVTIAQLKEEIARDGATPAFWVQCRCHVTYLKSSDAGCFYPACPLRNGERMC 545
Query: 230 NKKV-IDQNNGMYRCEK-CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA 287
KK+ D+ G + CE+ + +R I+ + + D T WV+ F + + I+G+TA
Sbjct: 546 QKKLRYDEAMGTWNCERHAGEHVPNCEWRYIINMTVADHTGQQWVSAFGDTGDVIMGMTA 605
Query: 288 QEVGESTE-DHPALKKAL----FTQYIFRLRAKLEHYNGTKKI 325
+ E + ++ A +KA+ F Q++ + + + YN ++
Sbjct: 606 GALKELMDTNYDAYEKAIADANFKQFLMKFKVADDTYNDETRV 648
Score = 47.4 bits (111), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 11/111 (9%)
Query: 686 YKACPSQD----CNKKV-IDQNNGMYRCEK-CNKEFNTFTYRLILPVMIGDWTNSVWVTL 739
Y ACP ++ C KK+ D+ G + CE+ + +R I+ + + D T WV+
Sbjct: 533 YPACPLRNGERMCQKKLRYDEAMGTWNCERHAGEHVPNCEWRYIINMTVADHTGQQWVSA 592
Query: 740 FQNEAESILGVTAQEVGESTE-DHPALKKAL----FTQYIFRLRAKLEHYN 785
F + + I+G+TA + E + ++ A +KA+ F Q++ + + + YN
Sbjct: 593 FGDTGDVIMGMTAGALKELMDTNYDAYEKAIADANFKQFLMKFKVADDTYN 643
>gi|145356040|ref|XP_001422250.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582490|gb|ABP00567.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 573
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 158/298 (53%), Gaps = 31/298 (10%)
Query: 366 VSSGSATNRSVLIILELNIIKPGTEI-------GFKIGNPQPLNTNTDNSSTQQTPAATN 418
+SSG+ +VL + ++ G E GF++ + D TPAA
Sbjct: 63 LSSGAVKENAVLKLTDVAFETDGVERKPFAVINGFEV-------VDADVKEKVTTPAA-- 113
Query: 419 TNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGK 478
P A V P+ +L+PY+ WT+K ++TNK +RE+ +ARG GK
Sbjct: 114 ----KAAKTEPKTPASAERAAV---PLAALNPYRTPWTVKVKLTNKGNVREYKSARGPGK 166
Query: 479 LFSIDLLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMS 537
+ S+D +DE G I AT++ + ++ ++E KVYY+S +LKPA+K++S+ NDYEM+
Sbjct: 167 VCSVDFVDEEGTAIGATLWREAIEKYDSVLEVGKVYYVSKGSLKPADKRYSTSGNDYEMN 226
Query: 538 FTHSTTVIPCNEDEVGNMPSVK--YCFVPLKTIA-EISPDENIDVLGVCIDAAELSSVTG 594
+ CN+ + + ++ Y FVP+ +A +I N+DV+ V + +ELSS+
Sbjct: 227 LDGKCEIDVCNDIDQSSAQKMQRAYAFVPINKLASKIGARGNVDVVAVVKEVSELSSIRR 286
Query: 595 KTNQKTYMKRDITLVDQSQASVTMTLWGKEA----ETFDASNKPVIAVKAARVSEFQG 648
K++ KR++ LVD S +V +TLW A E + PV+A+++ RV +++G
Sbjct: 287 KSDNTELNKREVVLVDDSAKTVRLTLWNALAVEVGEQLASMTNPVVAIRSVRVGDYEG 344
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 168/340 (49%), Gaps = 24/340 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK--YCFVPLKTIA-EISPDENID 61
PA+K++S+ NDYEM+ + CN+ + + ++ Y FVP+ +A +I N+D
Sbjct: 211 PADKRYSTSGNDYEMNLDGKCEIDVCNDIDQSSAQKMQRAYAFVPINKLASKIGARGNVD 270
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA----ETFDASNKP 117
V+ V + +ELSS+ K++ KR++ LVD S +V +TLW A E + P
Sbjct: 271 VVAVVKEVSELSSIRRKSDNTELNKREVVLVDDSAKTVRLTLWNALAVEVGEQLASMTNP 330
Query: 118 VIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFS-----TQTNTRFEPV-S 171
V+A+++ RV +++G ++S S ++ D+P +++ W+S +T E + S
Sbjct: 331 VVAIRSVRVGDYEGVSIGTVSRSDIVIDPEDVPRAVEIKKWWSEGGSSAETTAAGEGLTS 390
Query: 172 QRTGGMGGGAAGNLLLMREIQDQQLG-MGDKADYCSVRGIIQVFRGSNTTY-KACPSQDC 229
+ G A NL E+Q +++ + DK + V + + T Y A P +
Sbjct: 391 AQQGQKSEIMASNLA---ELQPEEIAPVTDKPTFAWVCAHTVMCKPDQTMYYTATPEEGN 447
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
NKKVI +++G + CE + ++T R I+ D + W+ F EA + G+TA E
Sbjct: 448 NKKVI-ESDGKWYCEANGQTYDTCERRYIMRFKAQDSSEGAWLNAFNEEATKMFGMTANE 506
Query: 290 VGESTED-----HPALKKALFTQYIFRLRAKLEHYNGTKK 324
+ E E+ A+KK + F ++ E Y G K
Sbjct: 507 MHELKENDFAAYERAVKKMTCQHWSFLVKVVTEEYQGESK 546
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
Y A P + NKKVI +++G + CE + ++T R I+ D + W+ F EA
Sbjct: 439 YTATPEEGNNKKVI-ESDGKWYCEANGQTYDTCERRYIMRFKAQDSSEGAWLNAFNEEAT 497
Query: 746 SILGVTAQEVGESTED-----HPALKKALFTQYIFRLRAKLEHY 784
+ G+TA E+ E E+ A+KK + F ++ E Y
Sbjct: 498 KMFGMTANEMHELKENDFAAYERAVKKMTCQHWSFLVKVVTEEY 541
>gi|428166243|gb|EKX35222.1| replication protein A1, 70kDa, partial [Guillardia theta CCMP2712]
Length = 439
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 109/372 (29%), Positives = 187/372 (50%), Gaps = 29/372 (7%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+++ YEM+ + +TT+ C E++ + Y + E +N+DV+GV
Sbjct: 81 AQSKYNNTKCQYEMTVSTNTTIERCLEEDAPQVCISLYMIEVNCLLVEKGNLQNVDVIGV 140
Query: 66 CIDAAELSSVT---GKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD---ASNKPVI 119
+ L +T G+ + K KR+++LVD+S +V++TLW AE FD A+N ++
Sbjct: 141 VQEVEALGEITIKQGRDSGKQKSKRNVSLVDKSGKTVSITLWDNHAEQFDTSHATNHSIL 200
Query: 120 AVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST-QTNTRFEPVSQRT-GGM 177
AV+ ARVS++ G +LS SS+L +NP+ PE L+ W+S+ + F+PV + T G
Sbjct: 201 AVRGARVSDYNGC-SLSTLRSSMLQINPETPEAKDLREWYSSCDSGKSFQPVGEGTQAGK 259
Query: 178 GGGAAGNLLLMREIQDQQLGMG-DKADYCSVRGIIQVFRGSNTTYK-ACPSQDCNKKVID 235
G G L+ + + LG KAD +++ + SNT + P+ NKK +
Sbjct: 260 GPGGPAPRKLIEAVSKESLGSNTSKADIFTIKAYVTY---SNTEKQWQYPANPENKKKVV 316
Query: 236 QNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-ST 294
+ ++ E + +T R I D T W+T F A+ ILG +A E+ E
Sbjct: 317 ASGDVWIDESTGTQIDTCQRRYITTFAFMDLTGRQWLTCFDEHAQLILGKSADELYEIEC 376
Query: 295 EDHPAL----KKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDIITDGTL 350
D A K A F +Y+ ++RAK E Y G + F++++ + + +++
Sbjct: 377 TDKVAFEGVWKAAYFKEYMIKVRAKAEEYKGETR-------TKFSVMSLEPVNYVSE--- 426
Query: 351 SEFTIVQIKRYI 362
S+ I +I+RY+
Sbjct: 427 SQHLISEIRRYL 438
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 112/405 (27%), Positives = 188/405 (46%), Gaps = 65/405 (16%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSG-KLFSIDLLDESGEIRATMFNDECNR 502
PI + PY +KA++ +K +R + + +FS +LD+S +++ T +N++C +
Sbjct: 2 PIAMIHPY-GSCNVKAKLISKEDVRRFKGRNNTDMAVFSAVVLDDSSDMKVTFWNEQCEK 60
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
+HD + + Y S + K A K+++ YEM+ + +TT+ C E++ + Y
Sbjct: 61 YHDSLVVGQWYVFSKGSFKVAQSKYNNTKCQYEMTVSTNTTIERCLEEDAPQVCISLYMI 120
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVT---GKTNQKTYMKRDITLVDQSQASVTMT 619
+ E +N+DV+GV + L +T G+ + K KR+++LVD+S +V++T
Sbjct: 121 EVNCLLVEKGNLQNVDVIGVVQEVEALGEITIKQGRDSGKQKSKRNVSLVDKSGKTVSIT 180
Query: 620 LWGKEAETFD---ASNKPVIAVKAARVSEFQG-NLLLMR-----------EIQD------ 658
LW AE FD A+N ++AV+ ARVS++ G +L +R E +D
Sbjct: 181 LWDNHAEQFDTSHATNHSILAVRGARVSDYNGCSLSTLRSSMLQINPETPEAKDLREWYS 240
Query: 659 --------QQLGMGDKADYC----SVRGIIQVFR----GSNT------TYKA-------- 688
Q +G G +A + R +I+ GSNT T KA
Sbjct: 241 SCDSGKSFQPVGEGTQAGKGPGGPAPRKLIEAVSKESLGSNTSKADIFTIKAYVTYSNTE 300
Query: 689 ----CPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEA 744
P+ NKK + + ++ E + +T R I D T W+T F A
Sbjct: 301 KQWQYPANPENKKKVVASGDVWIDESTGTQIDTCQRRYITTFAFMDLTGRQWLTCFDEHA 360
Query: 745 ESILGVTAQEVGE-STEDHPAL----KKALFTQYIFRLRAKLEHY 784
+ ILG +A E+ E D A K A F +Y+ ++RAK E Y
Sbjct: 361 QLILGKSADELYEIECTDKVAFEGVWKAAYFKEYMIKVRAKAEEY 405
>gi|328909495|gb|AEB61415.1| replication protein a 70 kda DNA-binding subunit-like protein,
partial [Equus caballus]
Length = 187
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 90/151 (59%), Gaps = 5/151 (3%)
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
N + E++ + LG GDKADY S + R N Y+ACPSQDCNKKVIDQ NG+YRC
Sbjct: 12 NWKTLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQACPSQDCNKKVIDQQNGLYRC 71
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----P 298
EKC+ EF +F YR+IL V I D+ + WVT FQ AE+ILG +GE E +
Sbjct: 72 EKCDSEFPSFKYRMILSVNIADFQENQWVTCFQESAEAILGQNTAYLGELKEKNEQAFEE 131
Query: 299 ALKKALFTQYIFRLRAKLEHYNGTKKIPDGV 329
+ A F + FR+R KLE +N +I V
Sbjct: 132 VFQNANFRSFTFRIRVKLETFNDESRIKATV 162
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/142 (47%), Positives = 87/142 (61%), Gaps = 5/142 (3%)
Query: 649 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 708
N + E++ + LG GDKADY S + R N Y+ACPSQDCNKKVIDQ NG+YRC
Sbjct: 12 NWKTLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQACPSQDCNKKVIDQQNGLYRC 71
Query: 709 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----P 763
EKC+ EF +F YR+IL V I D+ + WVT FQ AE+ILG +GE E +
Sbjct: 72 EKCDSEFPSFKYRMILSVNIADFQENQWVTCFQESAEAILGQNTAYLGELKEKNEQAFEE 131
Query: 764 ALKKALFTQYIFRLRAKLEHYN 785
+ A F + FR+R KLE +N
Sbjct: 132 VFQNANFRSFTFRIRVKLETFN 153
>gi|294949396|ref|XP_002786176.1| Replication protein A 70 kDa DNA-binding subunit, putative
[Perkinsus marinus ATCC 50983]
gi|239900333|gb|EER17972.1| Replication protein A 70 kDa DNA-binding subunit, putative
[Perkinsus marinus ATCC 50983]
Length = 479
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 119/210 (56%), Gaps = 6/210 (2%)
Query: 444 PIVSLSPYQNK-WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECN 501
PI +S Y + WTIKARVT K+P+R + NARG G +FS+DLLD+ G EIR + FN
Sbjct: 6 PIREISSYSVRNWTIKARVTAKSPVRHFTNARGGGSVFSVDLLDKEGSEIRGSFFNAAAE 65
Query: 502 RFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC 561
+F +++K KVY S +K ANK++SS N++YE+ F + ++ +D ++ +KY
Sbjct: 66 KFDKLLQKGKVYTFSKGNVKVANKRYSSCNHNYEIVFEEDSQIVEVQDDVDDHIDKIKYS 125
Query: 562 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
F P++ + S +D+L V D +V K N +R++T+ D+S V +T W
Sbjct: 126 FCPVRELKSKSVPSTVDLLVVIKDHRPAGTVNSK-NGAELFRRNLTVCDESGCCVDVTFW 184
Query: 622 GKEAETFDAS---NKPVIAVKAARVSEFQG 648
D S +PV+A+K V ++ G
Sbjct: 185 NDLVNVVDESVLQTQPVVAMKGVSVRDYGG 214
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 174/341 (51%), Gaps = 35/341 (10%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK++SS N++YE+ F + ++ +D ++ +KY F P++ + S +D+L V
Sbjct: 87 ANKRYSSCNHNYEIVFEEDSQIVEVQDDVDDHIDKIKYSFCPVRELKSKSVPSTVDLLVV 146
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS---NKPVIAVK 122
D +V K N +R++T+ D+S V +T W D S +PV+A+K
Sbjct: 147 IKDHRPAGTVNSK-NGAELFRRNLTVCDESGCCVDVTFWNDLVNVVDESVLQTQPVVAMK 205
Query: 123 AARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFS-TQTNTRFEPVSQRTGGMGGGA 181
V ++ GG++ S S+ + +NPDIPE +L+ W++ T + F +SQ+ G G+
Sbjct: 206 GVSVRDY-GGRSCSTLNSTQIEVNPDIPEAKQLKIWWANTGCSMAFTNLSQQ-GTSVPGS 263
Query: 182 AGNLLLMREI-------QDQQLGMGDKADYCSVRGIIQVF--RGSNTT-----YKACPSQ 227
G ++ +E+ + + +G + G +Q RG + Y AC S
Sbjct: 264 GGQTMVTKEMTIAEMKNDVKNMDLGGSMHSYEIIGRLQFVTTRGRDGNDIPIFYMACES- 322
Query: 228 DCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILG--- 284
CN+K+ + ++G C+ CN++ N R +L D T+ ++T F ++A +++G
Sbjct: 323 -CNRKMAEGSDGF--CQACNRQVNV-KARYMLRSQFVDSTDDAYLTCFHDQAHTLIGRPV 378
Query: 285 ---VTAQEVGESTEDHPALKKALF-TQYIFRLRAKLEHYNG 321
V AQ+VG+S + LK+ + ++ R+RAK+E Y G
Sbjct: 379 EDFVMAQDVGKSAGNE--LKEHYYDKEWKIRVRAKMETYQG 417
>gi|429327218|gb|AFZ78978.1| replication factor-A protein 1, putative [Babesia equi]
Length = 646
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 120/210 (57%), Gaps = 5/210 (2%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
I L+ Y KW I ARV KT IR++NN RG +LFS DL D GEIRA F + +++
Sbjct: 192 ITDLTLYTPKWLIHARVVYKTEIRKFNNQRGESQLFSADLCDAHGEIRAIFFGEAVTKWY 251
Query: 505 DMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP 564
+E+ +VY IS LKPANK+F+++ + EM ++ + D+ +PS+ F P
Sbjct: 252 SFLEEGQVYSISGGQLKPANKRFNALKHSCEMILDENSHIQLFQNDD--KIPSICCTFTP 309
Query: 565 LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE 624
L + +I E+IDV+GV + + S+ K K+D+ +VD ++ ++ +TLWG +
Sbjct: 310 LNQLDDIKIGESIDVIGVVVKTNDSQSIQQKGTGNVIEKKDVFIVDSTRTTICLTLWGNK 369
Query: 625 AETFD---ASNKPVIAVKAARVSEFQGNLL 651
+ + + + PVI +K +V+ +QG L
Sbjct: 370 TQALNGKGSDSHPVICLKGVKVNSWQGKKL 399
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/342 (24%), Positives = 170/342 (49%), Gaps = 28/342 (8%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK+F+++ + EM ++ + D+ +PS+ F PL + +I E+IDV+G
Sbjct: 269 PANKRFNALKHSCEMILDENSHIQLFQNDD--KIPSICCTFTPLNQLDDIKIGESIDVIG 326
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD---ASNKPVIAV 121
V + + S+ K K+D+ +VD ++ ++ +TLWG + + + + + PVI +
Sbjct: 327 VVVKTNDSQSIQQKGTGNVIEKKDVFIVDSTRTTICLTLWGNKTQALNGKGSDSHPVICL 386
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRF--EPVSQRTGGMGG 179
K +V+ +Q GK L S+ +++ P IPE +L+ W++ R P ++
Sbjct: 387 KGVKVNSWQ-GKKLDAQGSTQITIEPVIPEALELRKWWTNVKGKRIIDSPFNELCTLSHI 445
Query: 180 GAAGNLLLMREIQDQQ-----LGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVI 234
+A N L + + L + + R +I++ R ++ ++ ACP C K+++
Sbjct: 446 VSATNQALQFKCKFDTVLTLFLAIDSNGMVFTTRALIEILRDNSFSWPACPG--CRKRMV 503
Query: 235 DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL-GVTAQEVGES 293
++ + + C +CN ++ + +L + I D T+ +WVT F ESI+ GV A E
Sbjct: 504 NEGD-RWNCTRCNSS-SSPIHLYMLTLKIVDGTSHLWVTAFTGVGESIMNGVKAFEAVTL 561
Query: 294 TEDHPA----------LKKALFTQYIFRLRAKLEHYNGTKKI 325
E ++A ++++F+++A +E++ KI
Sbjct: 562 AEKGGVDANGRNFSNLFEEARLSEFVFKIKATVENFMDEPKI 603
>gi|324505539|gb|ADY42379.1| Replication factor A 73 kDa subunit [Ascaris suum]
Length = 620
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 110/422 (26%), Positives = 189/422 (44%), Gaps = 72/422 (17%)
Query: 409 STQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIR 468
ST TPA +++G G N+ PI L+PY W + +V I
Sbjct: 161 STPITPATPSSSG--GERRNIT-------------PIKLLTPYCKNWRLCIKVVC---IE 202
Query: 469 EWNNARGSGKLFSIDLLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKF 527
E RG+ LFS +D+ G EIR FN + +++ D++YYI ++KP K+F
Sbjct: 203 EMRQFRGTS-LFSFSGVDDDGVEIRICAFNHLAEKVAALVKLDQMYYIRRASVKPTTKRF 261
Query: 528 SSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAA 587
D E+ T +I C + + P ++ F+ ++ + + + E +D++GV +
Sbjct: 262 KRNQYDMEVIIRDETEIIECIDRAEISSPKIRCDFIRIRNLPKFANSE-VDMMGVVREVG 320
Query: 588 ELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAV-KAARVSEF 646
++ +TGK + +KRDI +VD S SV TLWG+ A+ FDAS+ I V K A V +
Sbjct: 321 DVKQLTGKMGE-ALVKRDIQIVDDSLRSVIATLWGERAKNFDASSDVTILVFKRALVRTY 379
Query: 647 QGNL----------------------------------------LLMREIQDQQLG---M 663
G++ L+ + + +G +
Sbjct: 380 HGSISLSTTGSTIVDVNADLPEVKALRRWYEGNRNASFAALSTELIFSSSEHKWIGEVKV 439
Query: 664 GDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLI 723
+K Y +V +I N YK C ++ C KK+++ +G C KC + + Y
Sbjct: 440 LNKMIYFNVTAMIMNINVDNAVYKGCVNEGCRKKLLEV-DGTLHCPKCGNASDDYKYFYT 498
Query: 724 LPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLR 778
L + + D T + WV++F + AE ++G +A E+ ++ + + LF Y FR+
Sbjct: 499 LSMELCDMTGTHWVSVFDDSAEKLMGESADEIAKTRSFNYDTYCAHFRALLFKTYAFRVV 558
Query: 779 AK 780
A+
Sbjct: 559 AR 560
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/320 (27%), Positives = 157/320 (49%), Gaps = 24/320 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
P K+F D E+ T +I C + + P ++ F+ ++ + + + E +D++G
Sbjct: 256 PTTKRFKRNQYDMEVIIRDETEIIECIDRAEISSPKIRCDFIRIRNLPKFANSE-VDMMG 314
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAV-KA 123
V + ++ +TGK + +KRDI +VD S SV TLWG+ A+ FDAS+ I V K
Sbjct: 315 VVREVGDVKQLTGKMGE-ALVKRDIQIVDDSLRSVIATLWGERAKNFDASSDVTILVFKR 373
Query: 124 ARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAG 183
A V + G +LS + S+++ +N D+PE L+ W+ N F +S
Sbjct: 374 ALVRTYHGSISLSTTGSTIVDVNADLPEVKALRRWYEGNRNASFAALSTE---------- 423
Query: 184 NLLLMREIQDQQLG---MGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGM 240
L+ + + +G + +K Y +V +I N YK C ++ C KK+++ +G
Sbjct: 424 --LIFSSSEHKWIGEVKVLNKMIYFNVTAMIMNINVDNAVYKGCVNEGCRKKLLEV-DGT 480
Query: 241 YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH--- 297
C KC + + Y L + + D T + WV++F + AE ++G +A E+ ++ +
Sbjct: 481 LHCPKCGNASDDYKYFYTLSMELCDMTGTHWVSVFDDSAEKLMGESADEIAKTRSFNYDT 540
Query: 298 --PALKKALFTQYIFRLRAK 315
+ LF Y FR+ A+
Sbjct: 541 YCAHFRALLFKTYAFRVVAR 560
>gi|449282115|gb|EMC89022.1| Replication protein A 70 kDa DNA-binding subunit [Columba livia]
Length = 196
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 114/193 (59%), Gaps = 7/193 (3%)
Query: 433 RQASAPVVQTHPIVSLSPYQNK---WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG 489
RQ + Q H V+ NK W I A VT K I W+N+RG GKLFS +L++ES
Sbjct: 5 RQIRKQIKQNHTKVNKRKNTNKKSKWAICACVTQKGQICTWSNSRGEGKLFSKELVNESS 64
Query: 490 EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNE 549
EIRAT F+D ++F + E DKVYY S TLK ANK+++++ NDYE +FT T+V+PCN+
Sbjct: 65 EIRATAFSDHADKFFPLTELDKVYYFSKGTLKSANKQYTAVKNDYETTFTSETSVVPCND 124
Query: 550 DEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLV 609
+ ++PSV++ FV + D ++V GVC ++ + K N + KR++ L+
Sbjct: 125 AQ--HLPSVQFDFVSISDFENTPEDSIVNVSGVCKSYEDVIKIIMKVNNRDVSKRNVHLM 182
Query: 610 DQSQASVTMTLWG 622
D S+TM G
Sbjct: 183 D--SPSLTMQQLG 193
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+++++ NDYE +FT T+V+PCN+ + ++PSV++ FV + D ++V GV
Sbjct: 98 ANKQYTAVKNDYETTFTSETSVVPCNDAQ--HLPSVQFDFVSISDFENTPEDSIVNVSGV 155
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 105
C ++ + K N + KR++ L+D S+TM G
Sbjct: 156 CKSYEDVIKIIMKVNNRDVSKRNVHLMD--SPSLTMQQLG 193
>gi|359475570|ref|XP_003631705.1| PREDICTED: LOW QUALITY PROTEIN: replication factor A protein 1-like
[Vitis vinifera]
Length = 389
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/343 (29%), Positives = 166/343 (48%), Gaps = 31/343 (9%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE-ISPDENIDVLG 64
ANK+F ++ NDY M+ ++ V + +E +P K+ F+ ++ + ++ E +DV G
Sbjct: 23 ANKQFKTVQNDYGMTLNENSEVEEASNEETF-IPEAKFKFLXIEELGPYVNGKELVDVSG 81
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ETFDASNK-PV 118
V + ++ K+ + KRDIT+ D+S+ SV ++LW A E D ++K P+
Sbjct: 82 VVQSVSPTMTIRRKSTNEIVPKRDITIADKSKKSVVVSLWNDHATNVGXELLDNADKFPI 141
Query: 119 IAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ---------TNTRFEP 169
IA+K+ +V +FQG +LS S L +NPD PE KL+ W+ + P
Sbjct: 142 IAIKSLKVGDFQGVSLSTLSKSIAL-VNPDTPESKKLRSWYHDYHGKVASMACIGSDISP 200
Query: 170 VSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQD 228
S+ GG+ + L + LG DK + S+R I + T Y+AC +
Sbjct: 201 SSK--GGVRSMYYDRVSLSHVTSNPSLG-EDKPSFFSIRAYISFIKPEQTMWYQACKT-- 255
Query: 229 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 288
CNKKV D Y CE C K + + R I+ V + D + + LF +AE I G +A
Sbjct: 256 CNKKVTDAIESGYWCEGCEKNDDECSXRYIMVVKVSDDSGEACLALFNEQAERIFGCSAD 315
Query: 289 EV-------GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKK 324
E+ GE LK+A++ ++FR+ Y K+
Sbjct: 316 ELDKLKSQEGEENRFQQKLKEAIWVPHLFRISVAQHEYMNEKR 358
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 83/145 (57%), Gaps = 8/145 (5%)
Query: 511 KVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE 570
KVYYI LK ANK+F ++ NDY M+ ++ V + +E +P K+ F+ ++ +
Sbjct: 11 KVYYIXKGALKVANKQFKTVQNDYGMTLNENSEVEEASNEETF-IPEAKFKFLXIEELGP 69
Query: 571 -ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA---- 625
++ E +DV GV + ++ K+ + KRDIT+ D+S+ SV ++LW A
Sbjct: 70 YVNGKELVDVSGVVQSVSPTMTIRRKSTNEIVPKRDITIADKSKKSVVVSLWNDHATNVG 129
Query: 626 -ETFDASNK-PVIAVKAARVSEFQG 648
E D ++K P+IA+K+ +V +FQG
Sbjct: 130 XELLDNADKFPIIAIKSLKVGDFQG 154
Score = 65.9 bits (159), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Query: 665 DKADYCSVRGIIQVFRGSNTT-YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLI 723
DK + S+R I + T Y+AC + CNKKV D Y CE C K + + R I
Sbjct: 228 DKPSFFSIRAYISFIKPEQTMWYQACKT--CNKKVTDAIESGYWCEGCEKNDDECSXRYI 285
Query: 724 LPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-------GESTEDHPALKKALFTQYIFR 776
+ V + D + + LF +AE I G +A E+ GE LK+A++ ++FR
Sbjct: 286 MVVKVSDDSGEACLALFNEQAERIFGCSADELDKLKSQEGEENRFQQKLKEAIWVPHLFR 345
Query: 777 LRAKLEHY 784
+ Y
Sbjct: 346 ISVAQHEY 353
>gi|403361002|gb|EJY80197.1| Replication factor-A protein [Oxytricha trifallax]
Length = 701
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 121/213 (56%), Gaps = 3/213 (1%)
Query: 440 VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFND 498
+Q PI SL+ + W IKARVT K ++ W NA+ G + +++L+D G I AT +ND
Sbjct: 236 IQYTPIKSLNAFLFDWKIKARVTKKCDLKTWKNAKSEGHVMNVELIDNLGTLILATFYND 295
Query: 499 ECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV 558
++++M++++ VY +SN ++K ANKKF+SI NDY + F S+ + +D N+
Sbjct: 296 AALKYNEMLQENHVYLMSNGSVKIANKKFTSIKNDYCIVFDKSSDIKEVEDD--SNIQQQ 353
Query: 559 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM 618
+ FV + I + +D +GV +LSS K KR + + D+S +++M
Sbjct: 354 GFNFVTIDEINDFEQSRTVDTVGVITQVGQLSSFQPKNGGAAKDKRSLQIADESGLAISM 413
Query: 619 TLWGKEAETFDASNKPVIAVKAARVSEFQGNLL 651
TLWG+ A + V+A++ A+VS++ G L
Sbjct: 414 TLWGQNASKLEFKEGSVLAIRGAKVSDYGGKTL 446
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/325 (27%), Positives = 151/325 (46%), Gaps = 26/325 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANKKF+SI NDY + F S+ + +D N+ + FV + I + +D +GV
Sbjct: 320 ANKKFTSIKNDYCIVFDKSSDIKEVEDD--SNIQQQGFNFVTIDEINDFEQSRTVDTVGV 377
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+LSS K KR + + D+S +++MTLWG+ A + V+A++ A+
Sbjct: 378 ITQVGQLSSFQPKNGGAAKDKRSLQIADESGLAISMTLWGQNASKLEFKEGSVLAIRGAK 437
Query: 126 VSEFQGGKTL-SLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGN 184
VS++ GGKTL S S + ++ D +L+ W + + VS G G +
Sbjct: 438 VSDY-GGKTLNSGHEHSQIFIDVDHKRTRELKQWNANRNQDGLNSVSTIGGAQGNQQSEK 496
Query: 185 LLLMREIQDQQLGMGD----------------KADYCSVRGIIQVFRGSNTTYK-ACPSQ 227
L R I + + + KA + + G + R + Y +CP
Sbjct: 497 LDNFRLISEVVKNVSEEGASHQPTYNSMYAQPKAKFFKISGFVSHARSDDKYYYLSCP-- 554
Query: 228 DCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA 287
DC +KV+D+ G +RCE CNK F+ I+ V D T +++ + + I+G+TA
Sbjct: 555 DCRRKVVDELEG-FRCENCNKSFSRSFPTYIMTVKFQDATGDMYIQFARELGDQIMGMTA 613
Query: 288 QEVGESTE--DHPALKKALFTQYIF 310
+E ++ E ++P K +Q I
Sbjct: 614 EEFKDAKEQLENPEEMKLFLSQQIL 638
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 666 KADYCSVRGIIQVFRGSNTTYK-ACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLIL 724
KA + + G + R + Y +CP DC +KV+D+ G +RCE CNK F+ I+
Sbjct: 529 KAKFFKISGFVSHARSDDKYYYLSCP--DCRRKVVDELEG-FRCENCNKSFSRSFPTYIM 585
Query: 725 PVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE--DHPALKKALFTQYIF 775
V D T +++ + + I+G+TA+E ++ E ++P K +Q I
Sbjct: 586 TVKFQDATGDMYIQFARELGDQIMGMTAEEFKDAKEQLENPEEMKLFLSQQIL 638
>gi|294929957|ref|XP_002779439.1| replication protein A 70kDa, putative [Perkinsus marinus ATCC
50983]
gi|239888547|gb|EER11234.1| replication protein A 70kDa, putative [Perkinsus marinus ATCC
50983]
Length = 788
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 121/211 (57%), Gaps = 9/211 (4%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL-DESGEIRATMFNDECNR 502
PI LS Y KWTIK RV++K+ +R + NARG G+LFSI+L+ D++GEIRAT FN +
Sbjct: 319 PISQLSVYSQKWTIKGRVSSKSDVRTFVNARGEGQLFSIELVDDQNGEIRATFFNSAVTK 378
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F+ I++ +VY S +K AN +F+ YE++F + N+ ++P + Y
Sbjct: 379 FYPAIQQGRVYTFSKGQVKQANARFNP-GAAYELTFNDDAIIEEANDS--ADIPRILYKI 435
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
+ TI + + DE +D+ G+ A +S++ + + +R+ T+VD S S+ MT+WG
Sbjct: 436 SKIATIQDRNADEFVDLCGIITHCAPISTIVVRNTGQERARRNFTIVDDSGCSIEMTVWG 495
Query: 623 KEAETFDASN-----KPVIAVKAARVSEFQG 648
+ A+ PV+ +K AR+S + G
Sbjct: 496 ETAQNCGVDENRVQYHPVVMIKNARISNYGG 526
Score = 85.9 bits (211), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 89/373 (23%), Positives = 176/373 (47%), Gaps = 47/373 (12%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN +F+ YE++F + N+ ++P + Y + TI + + DE +D+ G+
Sbjct: 399 ANARFNP-GAAYELTFNDDAIIEEANDS--ADIPRILYKISKIATIQDRNADEFVDLCGI 455
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN-----KPVIA 120
A +S++ + + +R+ T+VD S S+ MT+WG+ A+ PV+
Sbjct: 456 ITHCAPISTIVVRNTGQERARRNFTIVDDSGCSIEMTVWGETAQNCGVDENRVQYHPVVM 515
Query: 121 VKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGMGG 179
+K AR+S + GGK+L+ + ++ L ++PD +++ W+ T + +S GG GG
Sbjct: 516 IKNARISNY-GGKSLTTASTTTLEVDPDDSRAFEVKNWWLQGGQTGAVQALSSGGGGAGG 574
Query: 180 GAAGNLL-LMREIQDQQLGMGDKA--DYCSVRG----------IIQVFRGSNTTYKACPS 226
A ++ +MR + L + +A D + R + Q+++ ++ K
Sbjct: 575 NAPKTVIDVMRMDNNLYLSLSGQASSDVPNSRPVNTHNIPRATVAQIYKSND---KPLYY 631
Query: 227 QDCNKKVIDQNNGMYRC-EKCNKEFNTFTY-------------RLILPVMIGDWTNSVWV 272
C ++ D G+ +C +K ++ +T T+ R I+ + + D + V V
Sbjct: 632 TSCITEIPDGRGGIRKCSKKVEQDISTGTWSCIEGHQNPQCMPRYIISIKLADISGEVMV 691
Query: 273 TLFQNEAESILGVTAQE----VGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDG 328
F +A+++LGV+AQ+ +GE E + F + RLR+K E Y +++
Sbjct: 692 RAFDEQAQALLGVSAQDMMNGMGED-EIETLINNTQFKKINVRLRSKKEVYTDEERV--N 748
Query: 329 VNINSFAMLATQL 341
V++ F + Q+
Sbjct: 749 VSMTDFTPITDQI 761
>gi|294875666|ref|XP_002767426.1| replication factor a 1, rfa1, putative [Perkinsus marinus ATCC
50983]
gi|239868993|gb|EER00144.1| replication factor a 1, rfa1, putative [Perkinsus marinus ATCC
50983]
Length = 582
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 121/211 (57%), Gaps = 9/211 (4%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL-DESGEIRATMFNDECNR 502
PI LS Y KWTIK RV++K+ +R + NARG G+LFSI+L+ D++GEIRAT FN +
Sbjct: 319 PISQLSVYSQKWTIKGRVSSKSDVRTFVNARGEGQLFSIELVDDQNGEIRATFFNSAVTK 378
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F+ I++ +VY S +K AN +F+ YE++F + N+ ++P + Y
Sbjct: 379 FYPAIQQGRVYTFSKGQVKQANARFNP-GAAYELTFNDDAIIEEANDS--ADIPRILYKI 435
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
+ TI + + DE +D+ G+ A +S++ + + +R+ T+VD S S+ MT+WG
Sbjct: 436 SKIATIQDRNADEFVDLCGIITHCAPISTIVVRNTGQERARRNFTIVDDSGCSIEMTVWG 495
Query: 623 KEAETFDASN-----KPVIAVKAARVSEFQG 648
+ A+ PV+ +K AR+S + G
Sbjct: 496 ETAQNCGVDENRVQYHPVVMIKNARISNYGG 526
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 84/159 (52%), Gaps = 9/159 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN +F+ YE++F + N+ ++P + Y + TI + + DE +D+ G+
Sbjct: 399 ANARFNP-GAAYELTFNDDAIIEEANDS--ADIPRILYKISKIATIQDRNADEFVDLCGI 455
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN-----KPVIA 120
A +S++ + + +R+ T+VD S S+ MT+WG+ A+ PV+
Sbjct: 456 ITHCAPISTIVVRNTGQERARRNFTIVDDSGCSIEMTVWGETAQNCGVDENRVQYHPVVM 515
Query: 121 VKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF 159
+K AR+S + GGK+L+ + ++ L ++PD +++ W+
Sbjct: 516 IKNARISNY-GGKSLTTASTTTLEVDPDDSRAFEVKNWW 553
>gi|294875668|ref|XP_002767427.1| replication factor a 1, rfa1, putative [Perkinsus marinus ATCC
50983]
gi|239868994|gb|EER00145.1| replication factor a 1, rfa1, putative [Perkinsus marinus ATCC
50983]
Length = 577
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 121/211 (57%), Gaps = 9/211 (4%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL-DESGEIRATMFNDECNR 502
PI LS Y KWTIK RV++K+ +R + NARG G+LFSI+L+ D++GEIRAT FN +
Sbjct: 314 PISQLSVYSQKWTIKGRVSSKSDVRTFVNARGEGQLFSIELVDDQNGEIRATFFNSAVTK 373
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F+ I++ +VY S +K AN +F+ YE++F + N+ ++P + Y
Sbjct: 374 FYPAIQQGRVYTFSKGQVKQANARFNP-GAAYELTFNDDAIIEEANDS--ADIPRILYKI 430
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
+ TI + + DE +D+ G+ A +S++ + + +R+ T+VD S S+ MT+WG
Sbjct: 431 SKIATIQDRNADEFVDLCGIITHCAPISTIVVRNTGQERARRNFTIVDDSGCSIEMTVWG 490
Query: 623 KEAETFDASN-----KPVIAVKAARVSEFQG 648
+ A+ PV+ +K AR+S + G
Sbjct: 491 ETAQNCGVDENRVQYHPVVMIKNARISNYGG 521
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 84/159 (52%), Gaps = 9/159 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN +F+ YE++F + N+ ++P + Y + TI + + DE +D+ G+
Sbjct: 394 ANARFNP-GAAYELTFNDDAIIEEANDS--ADIPRILYKISKIATIQDRNADEFVDLCGI 450
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN-----KPVIA 120
A +S++ + + +R+ T+VD S S+ MT+WG+ A+ PV+
Sbjct: 451 ITHCAPISTIVVRNTGQERARRNFTIVDDSGCSIEMTVWGETAQNCGVDENRVQYHPVVM 510
Query: 121 VKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF 159
+K AR+S + GGK+L+ + ++ L ++PD +++ W+
Sbjct: 511 IKNARISNY-GGKSLTTASTTTLEVDPDDSRAFEVKNWW 548
>gi|384246518|gb|EIE20008.1| hypothetical protein COCSUDRAFT_19010 [Coccomyxa subellipsoidea
C-169]
Length = 476
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/417 (23%), Positives = 182/417 (43%), Gaps = 69/417 (16%)
Query: 437 APVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATM 495
A V PI +L+PY N WTI+A++ +K P+R ++ A +F ++++D+ G I T+
Sbjct: 27 ASRVACQPIHALNPYSNDWTIRAKLVSKAPLRHFDKAGQQQAVFGVEVVDDQGTTIEITL 86
Query: 496 FNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNM 555
+ +F+D +E+ +VY +K ANK + ++ NDY + + + + C + +V M
Sbjct: 87 WRGLAEKFYDHLEEGRVYIFRRGQVKLANKNYKTVRNDYTIHMDNGSEIEQCEDSDVSKM 146
Query: 556 PSVKYCFVPLKTIAEISPDEN-IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA 614
+ K FV + + + + +DVLG+ L SV + +RD+TLVDQ
Sbjct: 147 -TAKLKFVDFERLPMYAGKKTLVDVLGIATAVGPLGSVKRSRDGTELARRDVTLVDQGAK 205
Query: 615 SVTMTLWGKEAETFDA--SNKP--VIAVKAARVSEFQGNLLLM----------------- 653
+V +TLWG AE A +P +I++ + RV++F G L
Sbjct: 206 TVVVTLWGSTAEEVGAQLEQQPDALISISSCRVTDFNGVSLSTVTRSGVSVEPEGERADA 265
Query: 654 ---------REIQDQQLGMGDKADYCSVRGI--IQVFRGSNTTYKACPSQDCNKKV---- 698
R Q LG G + + G +Q F + P D +
Sbjct: 266 LRRWWESDGRTAPTQHLGEGLASAKRASGGAAELQTFAQLRVGKEELPPADAKPQYHTVI 325
Query: 699 -----IDQNNGMYR------------------CEKCNKEFNTFTYRLILPVMIGDWTNSV 735
ID +Y CE + + R ++ D +
Sbjct: 326 ATVANIDSQQSLYYEACPDNNRKVVKQGEGWFCEYDQQTYMAMVRRYVMLANCVDASGDC 385
Query: 736 WVTLFQNEAESILGVTAQEVGESTED-------HPALKKALFTQYIFRLRAKLEHYN 785
+++F +AE++LG++A E+ ED LK+A +++++ R++++ + YN
Sbjct: 386 LLSVFNEQAEALLGISADEIATLKEDETNPGPYEAVLKRAQWSEWVLRVQSRTQEYN 442
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 161/337 (47%), Gaps = 28/337 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN-IDVLG 64
ANK + ++ NDY + + + + C + +V M + K FV + + + + +DVLG
Sbjct: 114 ANKNYKTVRNDYTIHMDNGSEIEQCEDSDVSKM-TAKLKFVDFERLPMYAGKKTLVDVLG 172
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA--SNKP--VIA 120
+ L SV + +RD+TLVDQ +V +TLWG AE A +P +I+
Sbjct: 173 IATAVGPLGSVKRSRDGTELARRDVTLVDQGAKTVVVTLWGSTAEEVGAQLEQQPDALIS 232
Query: 121 VKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGM--- 177
+ + RV++F G +LS S +S+ P+ L+ W+ +++ R P G+
Sbjct: 233 ISSCRVTDFN-GVSLSTVTRSGVSVEPEGERADALRRWW--ESDGRTAPTQHLGEGLASA 289
Query: 178 ----GGGAAGNLLLMREIQDQQLGMGD-KADYCSVRGIIQVFRGSNTT-YKACPSQDCNK 231
GG A + ++L D K Y +V + + Y+ACP D N+
Sbjct: 290 KRASGGAAELQTFAQLRVGKEELPPADAKPQYHTVIATVANIDSQQSLYYEACP--DNNR 347
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG 291
KV+ Q G + CE + + R ++ D + +++F +AE++LG++A E+
Sbjct: 348 KVVKQGEGWF-CEYDQQTYMAMVRRYVMLANCVDASGDCLLSVFNEQAEALLGISADEIA 406
Query: 292 ESTED-------HPALKKALFTQYIFRLRAKLEHYNG 321
ED LK+A +++++ R++++ + YNG
Sbjct: 407 TLKEDETNPGPYEAVLKRAQWSEWVLRVQSRTQEYNG 443
>gi|255076569|ref|XP_002501959.1| predicted protein [Micromonas sp. RCC299]
gi|226517223|gb|ACO63217.1| predicted protein [Micromonas sp. RCC299]
Length = 867
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 118/215 (54%), Gaps = 11/215 (5%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNR 502
PI SL+PY N+WTI+ RVTN+ IR W+NARG GK+ ++DLLD E GEI+A FND +
Sbjct: 236 PISSLNPYMNRWTIRVRVTNQPAIRTWHNARGDGKVLNVDLLDSEGGEIKAVCFNDTAEK 295
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDE-VGNMPSVKYC 561
F + + +VY IS + K S ++E+ +++ V + + V ++ + Y
Sbjct: 296 FSQVFQGGRVYDISKGAISQVKNKKYSGGAEFEIRLDNTSLVDEVTDPQAVASIKKIHYN 355
Query: 562 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
F + +I + IDV+GV +L+++ + +T KR + + D S ASV +T+W
Sbjct: 356 FQKIASIEDAMVGGMIDVIGVVHTVGDLATIMKRDGGET-SKRSVHIRDDSGASVELTMW 414
Query: 622 --------GKEAETFDASNKPVIAVKAARVSEFQG 648
GK + PV+AVK RV EFQG
Sbjct: 415 APHAVDIGGKLEAMVNGGEHPVLAVKNGRVGEFQG 449
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 168/343 (48%), Gaps = 29/343 (8%)
Query: 7 NKKFSSINNDYEMSFTHSTTVIPCNEDE-VGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
NKK+S ++E+ +++ V + + V ++ + Y F + +I + IDV+GV
Sbjct: 318 NKKYSG-GAEFEIRLDNTSLVDEVTDPQAVASIKKIHYNFQKIASIEDAMVGGMIDVIGV 376
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW--------GKEAETFDASNKP 117
+L+++ + +T KR + + D S ASV +T+W GK + P
Sbjct: 377 VHTVGDLATIMKRDGGET-SKRSVHIRDDSGASVELTMWAPHAVDIGGKLEAMVNGGEHP 435
Query: 118 VIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGM 177
V+AVK RV EFQG K + S+ + +NPD+ E KL+ W+ + + GG
Sbjct: 436 VLAVKNGRVGEFQG-KNIGTVGSTNIDVNPDLTEAAKLRHWYDAEGGATATVATLGGGGG 494
Query: 178 GGGAAGNLLLMREIQDQQLGMGDKADY-----CSVRGIIQVFRGSNTTYKACPSQD---- 228
GGG + + +++D+ +G + C + I+ + S Y ACP Q+
Sbjct: 495 GGGKGDRCVSIAQLKDEIAQIGANPPFWVQCRCHIT-YIKAPQDSGPYYPACPLQNGDRM 553
Query: 229 CNKKV-IDQNNGMYRCEKCNKEFNTF-TYRLILPVMIGDWTNSVWVTLFQNEAESILGVT 286
C KK+ D+ G + CE+ + E +R IL + + D T WV+ F ++ + I+G+
Sbjct: 554 CQKKLRFDEAQGSWNCERHSGEHVPHCEWRYILNMTVSDHTGQHWVSAFGDQGDVIMGMK 613
Query: 287 AQEVGESTED-HPALKKAL----FTQYIFRLRAKLEHYNGTKK 324
A E+ D H A ++AL FT ++ +L+ K ++YNG +
Sbjct: 614 ASELHRLYNDNHAAYEQALQNANFTSHMMKLKVKEDNYNGETR 656
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 11/121 (9%)
Query: 676 IQVFRGSNTTYKACPSQD----CNKKV-IDQNNGMYRCEKCNKEFNTFT-YRLILPVMIG 729
I+ + S Y ACP Q+ C KK+ D+ G + CE+ + E +R IL + +
Sbjct: 532 IKAPQDSGPYYPACPLQNGDRMCQKKLRFDEAQGSWNCERHSGEHVPHCEWRYILNMTVS 591
Query: 730 DWTNSVWVTLFQNEAESILGVTAQEVGESTED-HPALKKAL----FTQYIFRLRAKLEHY 784
D T WV+ F ++ + I+G+ A E+ D H A ++AL FT ++ +L+ K ++Y
Sbjct: 592 DHTGQHWVSAFGDQGDVIMGMKASELHRLYNDNHAAYEQALQNANFTSHMMKLKVKEDNY 651
Query: 785 N 785
N
Sbjct: 652 N 652
Score = 46.6 bits (109), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
AML++QLN ++ DG L +FT+V++ Y+ ++ NR ++I L+LN+ +I
Sbjct: 60 AMLSSQLNPLVLDGKLEKFTVVKLTEYLCQTIN-----NRKIIIALQLNVGGKPLDI--- 111
Query: 395 IGNPQPLNTNTDNSSTQQTPAATN 418
IG P + Q P N
Sbjct: 112 IGQPIACEQAASSGDAPQPPMGGN 135
>gi|290999555|ref|XP_002682345.1| single-stranded DNA-binding replication protein A large subunit
[Naegleria gruberi]
gi|284095972|gb|EFC49601.1| single-stranded DNA-binding replication protein A large subunit
[Naegleria gruberi]
Length = 598
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 158/322 (49%), Gaps = 39/322 (12%)
Query: 358 IKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKIGNPQPLNTN--TDNSSTQQT-- 413
+ +Y V + + ++II++ + + + IGNP+P T +D SS+ +
Sbjct: 58 VDQYAVIKIYESLKHTKEIVIIVKYTVEE---RLDAVIGNPKPYATAGASDTSSSDKVKT 114
Query: 414 ----------------PAATNTNGSNGVHNNV------AIPRQASAPVVQTHPIVSLSPY 451
P A ++G+ N +I Q PI +L+PY
Sbjct: 115 TSTSKSSSSSASTSVQPKAKKSSGTTAADNFYDDGGMSSILDDDKLSNDQAKPISNLNPY 174
Query: 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDE-SGEIRATMFNDECNRFHDMIEKD 510
W IKARVT K+ ++ W+ G LFSI+LLDE G+IRAT FND +++D I++
Sbjct: 175 DKVWVIKARVTQKSDMKHWDKGTSKGSLFSIELLDEYGGQIRATFFNDVAKKYYDAIKER 234
Query: 511 KVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE 570
VY+ S LK AN+KF++I + YE++F T + + E+ P+ + L +
Sbjct: 235 SVYFFSGGKLKDANRKFTTIPHPYEITFDRDTVIQNARDSEI---PTDTFNCTRLCDMTN 291
Query: 571 ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKR-DITLVDQSQA---SVTMTLWGKEAE 626
+ + +DV GV + E T K N+KT KR +I+L+D S + +V +T+WG +
Sbjct: 292 VEDNMILDVAGVVQNIGETKEFTTKNNRKT--KRCNISLIDDSSSPFCTVDLTIWGDMCD 349
Query: 627 TFDASNKPVIAVKAARVSEFQG 648
T D V+ +K+ R S + G
Sbjct: 350 THDMQQGDVVILKSVRKSNYGG 371
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 155/326 (47%), Gaps = 23/326 (7%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN+KF++I + YE++F T + + E+ P+ + L + + + +DV GV
Sbjct: 247 ANRKFTTIPHPYEITFDRDTVIQNARDSEI---PTDTFNCTRLCDMTNVEDNMILDVAGV 303
Query: 66 CIDAAELSSVTGKTNQKTYMKR-DITLVDQSQA---SVTMTLWGKEAETFDASNKPVIAV 121
+ E T K N+KT KR +I+L+D S + +V +T+WG +T D V+ +
Sbjct: 304 VQNIGETKEFTTKNNRKT--KRCNISLIDDSSSPFCTVDLTIWGDMCDTHDMQQGDVVIL 361
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFE----PVSQRTGGM 177
K+ R S + GG +L+ S+ + +P IP +L W+ + F+ ++Q+ +
Sbjct: 362 KSVRKSNY-GGVSLNTINSTRIFKDPGIPIYQQLSEWYQNNEGS-FDGEGIKLTQKQAAV 419
Query: 178 GGGAAGNLL-LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 236
++ + ++ + DY ++R + + Y AC +++CNKKV Q
Sbjct: 420 NSERTFKRKNVIADCKNMSVDTVTAPDYLTIRAYVSYIK-HELWYDACTNKECNKKV-QQ 477
Query: 237 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILG-VTAQEV---GE 292
N G+Y C CN +T T + + + I DWT + F E + +TA ++
Sbjct: 478 NEGIYHCSSCNHSSDTCTRKFLANLGITDWTGKQYCNAFNQAVEKLFSDMTADDMCARAA 537
Query: 293 STEDHP-ALKKALFTQYIFRLRAKLE 317
E P L + FT+Y+F +R E
Sbjct: 538 EPEYMPYLLGEKTFTRYVFTVRVTTE 563
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
DY ++R + + Y AC +++CNKKV QN G+Y C CN +T T + + +
Sbjct: 446 DYLTIRAYVSYIK-HELWYDACTNKECNKKV-QQNEGIYHCSSCNHSSDTCTRKFLANLG 503
Query: 728 IGDWTNSVWVTLFQNEAESILG-VTAQEV---GESTEDHP-ALKKALFTQYIFRLRAKLE 782
I DWT + F E + +TA ++ E P L + FT+Y+F +R E
Sbjct: 504 ITDWTGKQYCNAFNQAVEKLFSDMTADDMCARAAEPEYMPYLLGEKTFTRYVFTVRVTTE 563
>gi|302836243|ref|XP_002949682.1| hypothetical protein VOLCADRAFT_104448 [Volvox carteri f.
nagariensis]
gi|300265041|gb|EFJ49234.1| hypothetical protein VOLCADRAFT_104448 [Volvox carteri f.
nagariensis]
Length = 900
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 123/232 (53%), Gaps = 13/232 (5%)
Query: 430 AIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ES 488
AI R + P + PI +L+PY +W I+ RVT+K +R W N +G GK+FS DLLD
Sbjct: 235 AIARDEAPPRIM--PISALNPYIARWAIRGRVTSKGELRRWTNVKGEGKVFSFDLLDLAG 292
Query: 489 GEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
G+IRAT F E ++F + IE +Y IS +L +F+ ++DYE+ ++ V
Sbjct: 293 GDIRATAFGAEADKFFETIEVGAIYQISKASLTQKKPQFNPTSHDYEIRLDRNSLVERVP 352
Query: 549 ED-EVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDIT 607
ED E +PS+ + F + + +D++G+ S+T +T ++T KR +
Sbjct: 353 EDKETSQIPSISFNFRRIADLETAEAGSMVDIIGLVETCDAWQSITRRTGEET-QKRSMV 411
Query: 608 LVDQSQASVTMTLWG--------KEAETFDASNKPVIAVKAARVSEFQGNLL 651
+ D+S S+ +TLWG + + + +PV A KA RV +F G L
Sbjct: 412 VRDESGRSIEVTLWGPLVNNPGDQIEQMVRSGARPVFAAKALRVGDFNGKTL 463
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 104/372 (27%), Positives = 181/372 (48%), Gaps = 40/372 (10%)
Query: 9 KFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCI 67
+F+ ++DYE+ ++ V ED E +PS+ + F + + +D++G+
Sbjct: 330 QFNPTSHDYEIRLDRNSLVERVPEDKETSQIPSISFNFRRIADLETAEAGSMVDIIGLVE 389
Query: 68 DAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG--------KEAETFDASNKPVI 119
S+T +T ++T KR + + D+S S+ +TLWG + + + +PV
Sbjct: 390 TCDAWQSITRRTGEET-QKRSMVVRDESGRSIEVTLWGPLVNNPGDQIEQMVRSGARPVF 448
Query: 120 AVKAARVSEFQGGKTLSLSMSSVLSLNP-DIPECHKLQGWFSTQTNTRFEPVSQRTGGMG 178
A KA RV +F G KTLS SSVL ++P D+P +L+ W+ R + V+ +
Sbjct: 449 AAKALRVGDFNG-KTLSTIGSSVLRIDPMDLPAAQRLRSWYDG--GGRSQAVNSLSSAGM 505
Query: 179 GGAAGNLLLMR----EIQDQQLGMGDKADYCSVRGIIQVFR-------GSNTTYKACP-- 225
GG AG R I+ + LG K D+ +V ++ + + S Y +CP
Sbjct: 506 GGGAGGKADRRTTFSAIKGEHLGTSGKPDWITVSAVVDMVKTDSQGGGPSAVVYPSCPHD 565
Query: 226 --SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL 283
+ C KK++D G + CE+CN +R ++ + D T+ ++T F + ++I
Sbjct: 566 FNGRPCQKKMMDIGGGNWNCERCNYSTENPAWRYLVSMSACDHTSKQYLTAFGDAGDAIF 625
Query: 284 GVTAQEV----GESTEDHPALKKAL-FTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLA 338
G TA EV E+T++ L +++ FT +IFRL+ +HYN +I V+I
Sbjct: 626 GRTAAEVRQLEAENTQEFDRLTESIRFTSFIFRLKVAEDHYNDEARI--KVSIYRL---- 679
Query: 339 TQLNDIITDGTL 350
+L D + +G L
Sbjct: 680 ERLTDFVKEGNL 691
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 75/146 (51%), Gaps = 16/146 (10%)
Query: 656 IQDQQLGMGDKADYCSVRGIIQVFR-------GSNTTYKACP----SQDCNKKVIDQNNG 704
I+ + LG K D+ +V ++ + + S Y +CP + C KK++D G
Sbjct: 522 IKGEHLGTSGKPDWITVSAVVDMVKTDSQGGGPSAVVYPSCPHDFNGRPCQKKMMDIGGG 581
Query: 705 MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV----GESTE 760
+ CE+CN +R ++ + D T+ ++T F + ++I G TA EV E+T+
Sbjct: 582 NWNCERCNYSTENPAWRYLVSMSACDHTSKQYLTAFGDAGDAIFGRTAAEVRQLEAENTQ 641
Query: 761 DHPALKKAL-FTQYIFRLRAKLEHYN 785
+ L +++ FT +IFRL+ +HYN
Sbjct: 642 EFDRLTESIRFTSFIFRLKVAEDHYN 667
>gi|156094579|ref|XP_001613326.1| replication factor a protein [Plasmodium vivax Sal-1]
gi|148802200|gb|EDL43599.1| replication factor a protein, putative [Plasmodium vivax]
Length = 1141
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 114/434 (26%), Positives = 199/434 (45%), Gaps = 90/434 (20%)
Query: 433 RQASAPVVQTHP-----IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDE 487
+Q+S+ V++ + I LS Y +KW IKARV +K +R + + GK+F+I+L DE
Sbjct: 672 QQSSSAVIKMNDGILMQINKLSQYSSKWIIKARVQSKDNVRRFYSGNKEGKVFNIELCDE 731
Query: 488 SGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPC 547
GEI+A F +R++D ++ ++Y IS +K ANKKF+++ +D E++ ++ +
Sbjct: 732 DGEIKANFFGKAVDRWYDYLQVGRIYKISKGNIKAANKKFNTLKHDCEITLDENSIIELL 791
Query: 548 NEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDIT 607
E++ N+P Y F + TI ++ +DV+GV E + K + KRD+
Sbjct: 792 EEND--NIPKFIYNFASIDTIKNMNTGSLVDVIGVVFSFQETMQILIKKTGQYKEKRDLI 849
Query: 608 LVDQSQASVTMTLWGKEAETFDAS---NKPVIAVKAARVSEFQGNLL------------- 651
L+D S ++ +TLWG+ A + + +I K +V E+QG L
Sbjct: 850 LIDDSNETINVTLWGEHALKVEEDCLRDNSIICFKYLKVGEWQGKKLESHPKTKIDVNPE 909
Query: 652 --------------------------------LMREIQD--QQLGMGDKADYCSVRGII- 676
L + I++ + + + ++ D S +GI+
Sbjct: 910 IDRAYVLQTWWSSNKQNLYHSVNVNTSSFHIELQKTIEEIKKDVNLANE-DALSGKGIVF 968
Query: 677 QVFRGSNTTYKACP----SQDCNKKVIDQ---------------NNGMYRCEKCNKEFNT 717
F + Y + P DCNKK+I + MY C KCNK NT
Sbjct: 969 TTFGFIDHIYNSIPVYSACPDCNKKMITNVVEEEEDDISSSQMMDQSMY-CAKCNKN-NT 1026
Query: 718 FTYRLILPVMIGDWTNSVWVTLFQNEAESIL-GVTAQE---------VGESTEDHPALKK 767
Y + + I D T+S+ + F A +I+ G++A E E+ E+ ++K
Sbjct: 1027 PVYNYSINLKITDSTDSLRASAFAGCARTIMNGLSADEFMALRQEYVTQENIENFDLIEK 1086
Query: 768 ALFTQYIFRLRAKL 781
A ++ FR++A +
Sbjct: 1087 AKLNEFFFRIKAYM 1100
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 158/347 (45%), Gaps = 49/347 (14%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANKKF+++ +D E++ ++ + E++ N+P Y F + TI ++ +DV+GV
Sbjct: 767 ANKKFNTLKHDCEITLDENSIIELLEEND--NIPKFIYNFASIDTIKNMNTGSLVDVIGV 824
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS---NKPVIAVK 122
E + K + KRD+ L+D S ++ +TLWG+ A + + +I K
Sbjct: 825 VFSFQETMQILIKKTGQYKEKRDLILIDDSNETINVTLWGEHALKVEEDCLRDNSIICFK 884
Query: 123 AARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAA 182
+V E+Q GK L + + +NP+I + LQ W+S+ + V+ T
Sbjct: 885 YLKVGEWQ-GKKLESHPKTKIDVNPEIDRAYVLQTWWSSNKQNLYHSVNVNTSSF----- 938
Query: 183 GNLLLMREIQD--------QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVI 234
++ L + I++ + + K + G I S Y ACP DCNKK+I
Sbjct: 939 -HIELQKTIEEIKKDVNLANEDALSGKGIVFTTFGFIDHIYNSIPVYSACP--DCNKKMI 995
Query: 235 DQ---------------NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEA 279
+ MY C KCNK NT Y + + I D T+S+ + F A
Sbjct: 996 TNVVEEEEDDISSSQMMDQSMY-CAKCNKN-NTPVYNYSINLKITDSTDSLRASAFAGCA 1053
Query: 280 ESIL-GVTAQE---------VGESTEDHPALKKALFTQYIFRLRAKL 316
+I+ G++A E E+ E+ ++KA ++ FR++A +
Sbjct: 1054 RTIMNGLSADEFMALRQEYVTQENIENFDLIEKAKLNEFFFRIKAYM 1100
>gi|124505339|ref|XP_001351411.1| replication factor a protein, putative [Plasmodium falciparum 3D7]
gi|6562734|emb|CAB62873.1| replication factor a protein, putative [Plasmodium falciparum 3D7]
Length = 1145
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 126/227 (55%), Gaps = 8/227 (3%)
Query: 432 PRQASAPVVQTHPIV----SLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDE 487
P Q++A + I+ LS Y +KW IKARV +K IR + + GK+F+I+L DE
Sbjct: 669 PYQSNAVIKMNDGILMQINKLSQYSSKWIIKARVQSKDNIRRYTSGSKEGKVFNIELCDE 728
Query: 488 SGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPC 547
GEI+A F +++ D IE K+Y IS +K ANKKF+++N+DYE++ ++I
Sbjct: 729 DGEIKANFFGKAVDKWFDFIEVGKIYKISKGMIKVANKKFNTLNHDYEITLD-ENSLIEI 787
Query: 548 NEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDIT 607
++E N+P Y F+ + I ++ +D++ V ++ E + K + KRD+T
Sbjct: 788 LDEENENIPKYNYNFISIDNIKNMNTGSFVDIIAVVLNYQEKMQIFVKKTGQYKDKRDVT 847
Query: 608 LVDQSQASVTMTLWGKEAETFDASN---KPVIAVKAARVSEFQGNLL 651
L+D+S ++ +TLW K A D N ++ K ++ E+QG L
Sbjct: 848 LIDESFDTIQVTLWEKNATIIDEMNLRDNCIVCFKYLKIGEWQGKKL 894
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 160/346 (46%), Gaps = 46/346 (13%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANKKF+++N+DYE++ ++I ++E N+P Y F+ + I ++ +D++ V
Sbjct: 764 ANKKFNTLNHDYEITLD-ENSLIEILDEENENIPKYNYNFISIDNIKNMNTGSFVDIIAV 822
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN---KPVIAVK 122
++ E + K + KRD+TL+D+S ++ +TLW K A D N ++ K
Sbjct: 823 VLNYQEKMQIFVKKTGQYKDKRDVTLIDESFDTIQVTLWEKNATIIDEMNLRDNCIVCFK 882
Query: 123 AARVSEFQGGKTLSLSMSSVLSLNPD-IPECHKLQGWF-------STQTNTRFEPVSQRT 174
++ E+QG K S + + + +NPD I + + L+ W+ N ++ T
Sbjct: 883 YLKIGEWQGKKLESHARTKI-EINPDNIEKAYILKNWWIHNKKMICNSINLSSNYINIET 941
Query: 175 GGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVI 234
N+ L+ E + K + G I + Y ACP DCNKK+I
Sbjct: 942 QKTIQEIKKNVNLVNE-----EALSGKGIMFTTYGFIDQIYNNMPVYSACP--DCNKKMI 994
Query: 235 ----DQN----------NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 280
D N MY C KCNK N Y + + I D T+S+ + F N A+
Sbjct: 995 SNSVDDNEYEPSSNLLEETMY-CAKCNKN-NIPVYNYYINLKITDSTDSIRASAFANCAK 1052
Query: 281 SIL-GVTAQE---------VGESTEDHPALKKALFTQYIFRLRAKL 316
I+ G++A+E + E+ E+ ++K ++ FR++ +
Sbjct: 1053 IIMNGLSAEEYMKLRQEYIMQENIENFDIIEKIKLNEFFFRIKVYM 1098
>gi|389582205|dbj|GAB64760.1| replication factor a protein [Plasmodium cynomolgi strain B]
Length = 1187
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 114/434 (26%), Positives = 197/434 (45%), Gaps = 90/434 (20%)
Query: 433 RQASAPVVQTHP-----IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDE 487
+Q + PV++ + I LS Y +KW IKARV +K +R + + GK+F+I+L DE
Sbjct: 718 QQTNNPVIKINDGILMQINKLSQYSSKWIIKARVQSKDNVRRFYSGNKEGKVFNIELCDE 777
Query: 488 SGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPC 547
GEI+A F ++++D ++ K+Y IS +K ANKKF+++ +D E++ ++ +
Sbjct: 778 DGEIKANFFGKAVDKWYDYLQVGKIYKISKGNVKAANKKFNTLKHDCEITLDENSIIELL 837
Query: 548 NEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDIT 607
E++ N+P Y F + TI ++ +DV+GV E + K + KRD+
Sbjct: 838 EEND--NIPKFIYNFASIDTIKNMNTGSLVDVIGVVFSFQETMQILIKKTGQYKEKRDLI 895
Query: 608 LVDQSQASVTMTLWGKEA---ETFDASNKPVIAVKAARVSEFQGNLL------------- 651
L+D S ++ +TLWG+ A E + +I K +V E+QG L
Sbjct: 896 LIDDSNETINVTLWGEHALKIEEVHLRDNSIICFKYLKVGEWQGKKLESHPKTKIDVNPE 955
Query: 652 --------------------------------LMREIQD--QQLGMGDKADYCSVRGII- 676
L + I++ + + + ++ D S +GI+
Sbjct: 956 IERTHVLQTWWSSNKQNLYSSVNVNTNSFHIELQKTIEEIKKDVNLANE-DALSGKGIVF 1014
Query: 677 QVFRGSNTTYKACP----SQDCNKKVIDQ---------------NNGMYRCEKCNKEFNT 717
F + Y + P DCNKK+I + MY C KCNK NT
Sbjct: 1015 TTFGFIDHIYNSIPVYSACPDCNKKMITNVVEEEEDDINSSQMMDQSMY-CAKCNKN-NT 1072
Query: 718 FTYRLILPVMIGDWTNSVWVTLFQNEAESIL-GVTAQE---------VGESTEDHPALKK 767
Y + + I D T+S+ + F A +I+ G++A E E+ E+ ++K
Sbjct: 1073 PIYNYSINLKITDSTDSLRASAFAGCARTIMNGLSADEFMALRQEYVTQENIENFDLIEK 1132
Query: 768 ALFTQYIFRLRAKL 781
++ FR++A +
Sbjct: 1133 VKLNEFFFRIKAYM 1146
Score = 108 bits (271), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 157/347 (45%), Gaps = 49/347 (14%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANKKF+++ +D E++ ++ + E++ N+P Y F + TI ++ +DV+GV
Sbjct: 813 ANKKFNTLKHDCEITLDENSIIELLEEND--NIPKFIYNFASIDTIKNMNTGSLVDVIGV 870
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA---ETFDASNKPVIAVK 122
E + K + KRD+ L+D S ++ +TLWG+ A E + +I K
Sbjct: 871 VFSFQETMQILIKKTGQYKEKRDLILIDDSNETINVTLWGEHALKIEEVHLRDNSIICFK 930
Query: 123 AARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAA 182
+V E+Q GK L + + +NP+I H LQ W+S+ + V+ T
Sbjct: 931 YLKVGEWQ-GKKLESHPKTKIDVNPEIERTHVLQTWWSSNKQNLYSSVNVNTNSF----- 984
Query: 183 GNLLLMREIQD--------QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVI 234
++ L + I++ + + K + G I S Y ACP DCNKK+I
Sbjct: 985 -HIELQKTIEEIKKDVNLANEDALSGKGIVFTTFGFIDHIYNSIPVYSACP--DCNKKMI 1041
Query: 235 DQ---------------NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEA 279
+ MY C KCNK NT Y + + I D T+S+ + F A
Sbjct: 1042 TNVVEEEEDDINSSQMMDQSMY-CAKCNKN-NTPIYNYSINLKITDSTDSLRASAFAGCA 1099
Query: 280 ESIL-GVTAQE---------VGESTEDHPALKKALFTQYIFRLRAKL 316
+I+ G++A E E+ E+ ++K ++ FR++A +
Sbjct: 1100 RTIMNGLSADEFMALRQEYVTQENIENFDLIEKVKLNEFFFRIKAYM 1146
>gi|145514039|ref|XP_001442930.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124410291|emb|CAK75533.1| unnamed protein product [Paramecium tetraurelia]
Length = 633
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 104/400 (26%), Positives = 193/400 (48%), Gaps = 68/400 (17%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNRF 503
I L P + IK R+T+KT I ++ N G G LF+I+++D + I+ FN C++F
Sbjct: 207 ISELYPGMRGFKIKGRITSKTDITQFKN--GKGYLFTIEIIDSDKQTIQGVFFNKLCDKF 264
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSIN---NDYEMSFTHSTTVIPCNEDEVGNMPSVKY 560
+D I+ KVYY N ++K ++SS N +DY++ F + + +DE + + Y
Sbjct: 265 YDFIDIGKVYYFENASVK--TNRYSSKNQNQSDYQIHFEDFSKISIAQDDE--EIDTFAY 320
Query: 561 CFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTL 620
++ + +S DE DVLGV ID + + K+N+ K++ITL DQ+Q + + L
Sbjct: 321 QIKTIEDVDNLSLDEKCDVLGVIIDIKPTTQIMTKSNENR-SKKNITLYDQTQRGIDIVL 379
Query: 621 WGKEAETFDASNKPVIAVKAARVSE--------------FQGNLLLMREIQDQQ------ 660
WG++AE + ++A + ++S+ ++ NL +++I Q
Sbjct: 380 WGQQAEKWQFQKDEIVAFRGLKISDYQMVRNLTVTNSTIYEKNLSNLKKINGFQEFYEFY 439
Query: 661 -------------------LGMGD--KADYCSVRGI-------IQVFRGSNTT----YKA 688
L + K D+ +R I I+ + + T Y+
Sbjct: 440 SKNKDFLETKPKESRKKFPLSYIEQIKKDFEGIRNIKFVKFYEIKAYITNIFTKLLYYEG 499
Query: 689 CPSQDCNKKVID-QNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESI 747
C ++C +KV+ Q +Y C+ CN+ F+ +Y+ + I D T ++ V++ ++ + I
Sbjct: 500 C--ENCKRKVVYIQQTKLYHCQSCNQNFDQPSYKYMFNAKIADTTGNLSVSVANDQGQQI 557
Query: 748 LGVTAQEVGESTE--DHPALKKALFTQYIFRLRAKLEHYN 785
L ++ E + ++ +K+A F Q+ F + K+E YN
Sbjct: 558 LQLSCDEFQKKSQVDKDNYVKRANFQQFRFLIIGKVETYN 597
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 159/331 (48%), Gaps = 25/331 (7%)
Query: 3 AAPANKKFSSIN---NDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN 59
A+ ++SS N +DY++ F + + +DE + + Y ++ + +S DE
Sbjct: 279 ASVKTNRYSSKNQNQSDYQIHFEDFSKISIAQDDE--EIDTFAYQIKTIEDVDNLSLDEK 336
Query: 60 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVI 119
DVLGV ID + + K+N+ K++ITL DQ+Q + + LWG++AE + ++
Sbjct: 337 CDVLGVIIDIKPTTQIMTKSNENR-SKKNITLYDQTQRGIDIVLWGQQAEKWQFQKDEIV 395
Query: 120 AVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGW-----FSTQTNTRFEPVSQRT 174
A + ++S++Q + L+++ S++ N + K+ G+ F ++ E T
Sbjct: 396 AFRGLKISDYQMVRNLTVTNSTIYEKN--LSNLKKINGFQEFYEFYSKNKDFLE-----T 448
Query: 175 GGMGGGAAGNLLLMREIQDQQLGMGD--KADYCSVRGIIQVFRGSNTTYKACPSQDCNKK 232
L + +I+ G+ + + ++ I Y+ C ++C +K
Sbjct: 449 KPKESRKKFPLSYIEQIKKDFEGIRNIKFVKFYEIKAYITNIFTKLLYYEGC--ENCKRK 506
Query: 233 VID-QNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG 291
V+ Q +Y C+ CN+ F+ +Y+ + I D T ++ V++ ++ + IL ++ E
Sbjct: 507 VVYIQQTKLYHCQSCNQNFDQPSYKYMFNAKIADTTGNLSVSVANDQGQQILQLSCDEFQ 566
Query: 292 ESTE--DHPALKKALFTQYIFRLRAKLEHYN 320
+ ++ +K+A F Q+ F + K+E YN
Sbjct: 567 KKSQVDKDNYVKRANFQQFRFLIIGKVETYN 597
>gi|308811891|ref|XP_003083253.1| Single-stranded DNA-binding replication protein A (RPA), large (70
kD) subunit and related ssDNA-binding proteins (ISS)
[Ostreococcus tauri]
gi|116055132|emb|CAL57528.1| Single-stranded DNA-binding replication protein A (RPA), large (70
kD) subunit and related ssDNA-binding proteins (ISS)
[Ostreococcus tauri]
Length = 718
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 156/326 (47%), Gaps = 62/326 (19%)
Query: 374 RSVLIILELNIIKPGTEIGFKIGNP---QPLNTNTDNSSTQQTPAATN------------ 418
R +++++E +++ ++ IG P QP N S+ PA N
Sbjct: 2 RRIMVVIEAEVVEKYDKV---IGQPRVWQP--QEAQNGSSHGAPAQRNAYGSAPAPMVQG 56
Query: 419 -TNGSNGVHNNVAIPRQAS--------------------------APVVQTHPIVSLSPY 451
+ G+NG + +A P+Q + AP Q + L+PY
Sbjct: 57 YSGGTNG--SGLAAPQQRTGGGGYGGGAPAATGQYRQSGAVARNEAPS-QIRTLNELNPY 113
Query: 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNRFHDMIEKD 510
QN+WT++AR+T + +R ++N +G GK+ ++LD G E++ F D RF + +
Sbjct: 114 QNRWTVRARITGRLELRSYSNTKGDGKVLGFEILDAEGTEMKCVGFGDAAVRFSNELHHG 173
Query: 511 KVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE 570
+VY IS ++ + +I+ YEM F +T + C + E ++ V+Y F + +A
Sbjct: 174 RVYEISKASISASRNPKYAIHQ-YEMKFDQNTVFVECPDAER-SIEKVRYKFKKVADLAT 231
Query: 571 ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW-------GK 623
P E DV+G+ EL+++ + +T KR + + D S A++ TLW G
Sbjct: 232 AMPGEMADVIGIAYHVGELATIMKRDGGET-TKRSVMIRDNSDAAIEFTLWDPHSVELGG 290
Query: 624 EAETFDASN-KPVIAVKAARVSEFQG 648
+ E+ AS KPVIAVK ARV EFQG
Sbjct: 291 QIESLIASGEKPVIAVKNARVGEFQG 316
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 176/353 (49%), Gaps = 35/353 (9%)
Query: 2 LAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENID 61
++A N K++ + YEM F +T + C + E ++ V+Y F + +A P E D
Sbjct: 183 ISASRNPKYAI--HQYEMKFDQNTVFVECPDAER-SIEKVRYKFKKVADLATAMPGEMAD 239
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW-------GKEAETFDAS 114
V+G+ EL+++ + +T KR + + D S A++ TLW G + E+ AS
Sbjct: 240 VIGIAYHVGELATIMKRDGGET-TKRSVMIRDNSDAAIEFTLWDPHSVELGGQIESLIAS 298
Query: 115 N-KPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST-QTNTRFEPVSQ 172
KPVIAVK ARV EFQ GK + S+ + +NPD E +++ WF + +F +S
Sbjct: 299 GEKPVIAVKNARVGEFQ-GKNMGTVGSTSVEINPDREEATEMRIWFDQGGADAQFTSLSG 357
Query: 173 RTGGMGGGAAGNLLL----MREIQDQQLGMGDKA-DYCSVRGIIQVFRGSNTT--YKACP 225
GG G G +G +L + ++ D+ + G+ A Y + +I+ + Y +CP
Sbjct: 358 TGGGEGSGRSGGNVLSIGRIVQLGDELMAQGEGAVAYVNTCAMIKHIKPGQEGPFYASCP 417
Query: 226 ----SQDCNKKV--IDQNNGMYRCEKCNKE-FNTFTYRLILPVMIGDWTNSVWVTLFQNE 278
+ C KK+ +D + G++ CE+ + E +R + +I D + WVT+F +E
Sbjct: 418 LMNGERQCMKKLRTVD-DTGVWSCERHSGEHIEAADWRYMFSCVIADHSAEQWVTVFGSE 476
Query: 279 AESIL-GVTAQEVGESTEDHP-ALKKAL----FTQYIFRLRAKLEHYNGTKKI 325
E ++ G+TA E+ ++ P +K L F Y RL+ ++ Y +I
Sbjct: 477 GEKVMSGMTAGEMRRMFDEQPDEFEKFLVGRHFNMYQLRLKVAVDTYGDMPRI 529
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 14/113 (12%)
Query: 686 YKACP----SQDCNKKV--IDQNNGMYRCEKCNKE-FNTFTYRLILPVMIGDWTNSVWVT 738
Y +CP + C KK+ +D + G++ CE+ + E +R + +I D + WVT
Sbjct: 413 YASCPLMNGERQCMKKLRTVD-DTGVWSCERHSGEHIEAADWRYMFSCVIADHSAEQWVT 471
Query: 739 LFQNEAESIL-GVTAQEVGESTEDHP-ALKKAL----FTQYIFRLRAKLEHYN 785
+F +E E ++ G+TA E+ ++ P +K L F Y RL+ ++ Y
Sbjct: 472 VFGSEGEKVMSGMTAGEMRRMFDEQPDEFEKFLVGRHFNMYQLRLKVAVDTYG 524
>gi|307103509|gb|EFN51768.1| hypothetical protein CHLNCDRAFT_59111, partial [Chlorella
variabilis]
Length = 736
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 133/249 (53%), Gaps = 18/249 (7%)
Query: 413 TPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNN 472
TPA+ T S G + SA PI +L+PY N W IKA+V +K R ++
Sbjct: 140 TPASHPTPPSAGWGQ-----KMGSATKRPLQPISALNPYNNNWAIKAKVVSKGSKRSFSR 194
Query: 473 ARGSGKLFSIDLLDESGE-IRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSIN 531
G +FS +++DE G I AT + + + ++++E+ KVY +KPA+K++S +
Sbjct: 195 ----GSVFSAEVVDEQGTTIEATFWREAADHAYELLEEGKVYIFGRGNVKPADKRYSRVR 250
Query: 532 NDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE-ISPDENIDVLGVCIDAAELS 590
NDY + F ++ + C +D + VK FVP++ +A + +D++GV +D L
Sbjct: 251 NDYALHFDTASELESCADDIDTSKMHVKMEFVPIEQLAAFVDKKMMVDIVGVVMDVKPLG 310
Query: 591 SVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD------ASNKPVIAVKAARVS 644
SV KT+Q +RDITLVDQS +V +T+WG AE PV+A+ A +S
Sbjct: 311 SVKRKTDQVELSRRDITLVDQSLKTVVLTMWGNAAEAAGREIEELVQQAPVVAITAC-LS 369
Query: 645 EFQGNLLLM 653
Q + +L+
Sbjct: 370 SLQRSAVLI 378
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 95/358 (26%), Positives = 150/358 (41%), Gaps = 55/358 (15%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE-ISPDENIDVL 63
PA+K++S + NDY + F ++ + C +D + VK FVP++ +A + +D++
Sbjct: 241 PADKRYSRVRNDYALHFDTASELESCADDIDTSKMHVKMEFVPIEQLAAFVDKKMMVDIV 300
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD------ASNKP 117
GV +D L SV KT+Q +RDITLVDQS +V +T+WG AE P
Sbjct: 301 GVVMDVKPLGSVKRKTDQVELSRRDITLVDQSLKTVVLTMWGNAAEAAGREIEELVQQAP 360
Query: 118 VIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFS--------TQTNTRFEP 169
V+A+ A SL S+VL +NPD+PE L+ W+ +
Sbjct: 361 VVAITAC---------LSSLQRSAVL-INPDVPEAVALRQWYDSSGRGAAMSHVGEGLAT 410
Query: 170 VSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVF--------------- 214
+ +G G +L L R DK Y +V +
Sbjct: 411 ALKHSGSSAGQERASLELFRAAAPAT--TQDKPHYSTVTATFAMVNPDQALFYMANPENN 468
Query: 215 -RGSNTTYKACPS------QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWT 267
+ S T + CP C V++Q G Y CE ++ R I + D +
Sbjct: 469 RKASTTAPRLCPGFMGLLCALC-VLVVEQGPGQYFCEYDGTTLSSMVRRYIFNAKVMDVS 527
Query: 268 NSVWVTLFQNEAESILGVTAQEVGESTED-----HPALKKALFTQYIFRLRAKLEHYN 320
V +F +AE +L + A E+ E E LK L+ + RL+A+ + +
Sbjct: 528 GECSVQVFNEQAEQLLEMKADELAELRETDAKQFQEVLKSVLWKDNVLRLKAQAQCFE 585
Score = 40.4 bits (93), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 698 VIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE 757
V++Q G Y CE ++ R I + D + V +F +AE +L + A E+ E
Sbjct: 493 VVEQGPGQYFCEYDGTTLSSMVRRYIFNAKVMDVSGECSVQVFNEQAEQLLEMKADELAE 552
Query: 758 STED-----HPALKKALFTQYIFRLRAKLEHYNK 786
E LK L+ + RL+A+ + + +
Sbjct: 553 LRETDAKQFQEVLKSVLWKDNVLRLKAQAQCFEE 586
>gi|349805559|gb|AEQ18252.1| putative replication protein A DNA-binding subunit [Hymenochirus
curtipes]
Length = 298
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 109/207 (52%), Gaps = 27/207 (13%)
Query: 584 IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARV 643
+ +A+L+ VT K+N + KR+I L+D S V+ TLWG++A+ FD S +PV+AVK AR+
Sbjct: 83 LKSADLTKVTIKSNNREVSKRNIHLMDSSGTVVSTTLWGEDADRFDGSRQPVVAVKGARL 142
Query: 644 SEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNN 703
S+F G L + + D + +R +Q N
Sbjct: 143 SDFGGRSLSVLSSSTVMIN-PDIPEAFKLRAWFDS---------------------EQQN 180
Query: 704 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH- 762
G++RCEKC+KEF F YRLI I D+ + W+T FQ AESILG A +GE E +
Sbjct: 181 GLFRCEKCDKEFPNFKYRLIPSANIADFGENQWITCFQESAESILGQNAAYLGELKEKNE 240
Query: 763 ----PALKKALFTQYIFRLRAKLEHYN 785
+ A F YIFR+R KLE YN
Sbjct: 241 QSFDEVFQNANFRSYIFRVRVKLETYN 267
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 72/102 (70%), Gaps = 2/102 (1%)
Query: 67 IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARV 126
+ +A+L+ VT K+N + KR+I L+D S V+ TLWG++A+ FD S +PV+AVK AR+
Sbjct: 83 LKSADLTKVTIKSNNREVSKRNIHLMDSSGTVVSTTLWGEDADRFDGSRQPVVAVKGARL 142
Query: 127 SEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRF 167
S+F GG++LS+ SS + +NPDIPE KL+ WF S Q N F
Sbjct: 143 SDF-GGRSLSVLSSSTVMINPDIPEAFKLRAWFDSEQQNGLF 183
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 57/96 (59%), Gaps = 5/96 (5%)
Query: 235 DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGEST 294
+Q NG++RCEKC+KEF F YRLI I D+ + W+T FQ AESILG A +GE
Sbjct: 177 EQQNGLFRCEKCDKEFPNFKYRLIPSANIADFGENQWITCFQESAESILGQNAAYLGELK 236
Query: 295 EDH-----PALKKALFTQYIFRLRAKLEHYNGTKKI 325
E + + A F YIFR+R KLE YN +I
Sbjct: 237 EKNEQSFDEVFQNANFRSYIFRVRVKLETYNDESRI 272
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ + L+ I ++ RYIV + R V+I++E+ +
Sbjct: 29 MSDGLNTLSSFMLATQLNTLVDNNLLATNCICEVTRYIV------NTKGRRVIIVMEMEV 82
Query: 385 IK 386
+K
Sbjct: 83 LK 84
>gi|68077039|ref|XP_680439.1| replication factor a protein [Plasmodium berghei strain ANKA]
gi|56501369|emb|CAI04746.1| replication factor a protein, putative [Plasmodium berghei]
Length = 1169
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 124/212 (58%), Gaps = 5/212 (2%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI LS Y KW IKARV +K IR++ GK+F+I+L DESGEI+ +F +++
Sbjct: 709 PINKLSQYSTKWIIKARVQSKDNIRKFYTGNKEGKVFNIELCDESGEIKVNVFGKAVDKW 768
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+D +E K+Y IS +K ANKKF+++ +D E++ ++ + E+++ N+P Y F
Sbjct: 769 YDYLEVGKIYKISKGNIKSANKKFNTLKHDCEITLDENSILELLEENDM-NIPKYIYNFY 827
Query: 564 PLKTI-AEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
P+ I A ++ +DV+GV + EL+ + K + K+D+ L+D++ ++ +TLWG
Sbjct: 828 PINEIKANLNTGTLVDVIGVVLSFQELNQILIKKTGQYKEKKDLMLIDETNETINVTLWG 887
Query: 623 KEA---ETFDASNKPVIAVKAARVSEFQGNLL 651
+ A E + + +I K +V E+QG L
Sbjct: 888 ENAVKMEEMNITENCIICFKCLKVGEWQGKKL 919
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 168/346 (48%), Gaps = 42/346 (12%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI-AEISPDENIDVLG 64
ANKKF+++ +D E++ ++ + E+++ N+P Y F P+ I A ++ +DV+G
Sbjct: 788 ANKKFNTLKHDCEITLDENSILELLEENDM-NIPKYIYNFYPINEIKANLNTGTLVDVIG 846
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA---ETFDASNKPVIAV 121
V + EL+ + K + K+D+ L+D++ ++ +TLWG+ A E + + +I
Sbjct: 847 VVLSFQELNQILIKKTGQYKEKKDLMLIDETNETINVTLWGENAVKMEEMNITENCIICF 906
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGA 181
K +V E+QG K S + V +NP++ + + L+ W+ + ++ T
Sbjct: 907 KCLKVGEWQGKKLESHPKTKV-EINPELDKAYTLKNWWINNKKNVYNTINLTTTTSNNNM 965
Query: 182 AGNLLLMREIQD--------QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKV 233
NL + IQ+ + + K + G I + Y ACP +CNKK+
Sbjct: 966 L-NLESQKTIQEIKKNVNLANEEVLSGKGIIFTTFGFIDHIYNAIPVYSACP--NCNKKM 1022
Query: 234 I-----------DQN--NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 280
+ DQN MY C KCNK N Y + + I D T+S+ V+ F N A+
Sbjct: 1023 VATVIEDGEEDMDQNVSESMY-CAKCNKN-NIPVYNYSINLKITDNTDSLRVSAFANSAK 1080
Query: 281 SIL-GVTAQEV---------GESTEDHPALKKALFTQYIFRLRAKL 316
+I+ G++A+E E+ E+ ++KA ++ FR++A +
Sbjct: 1081 TIMNGLSAEEFMKLRQEYISQENIENFDLIEKAKLNEFFFRIKAYM 1126
>gi|442751523|gb|JAA67921.1| Hypothetical protein [Ixodes ricinus]
Length = 151
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/145 (48%), Positives = 99/145 (68%), Gaps = 7/145 (4%)
Query: 99 VTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGW 158
V+ TLWG++A+ FD S +PV+A+K ARVS+F GG++LS+ SS + +NPDIPE +KL+GW
Sbjct: 8 VSATLWGEDADKFDGSRQPVMAIKGARVSDF-GGRSLSVLSSSTVIVNPDIPEAYKLRGW 66
Query: 159 FSTQTNTRFEPVS---QRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFR 215
F ++ + S R+GG G +A N + E++ + LG GDKADY S + R
Sbjct: 67 FDSEGQA-LDGASISDLRSGGTG--SATNWKTLYEVKSENLGQGDKADYFSCVATVVYLR 123
Query: 216 GSNTTYKACPSQDCNKKVIDQNNGM 240
N+ Y+ACP+QDCNKKVIDQ NG+
Sbjct: 124 KENSMYQACPTQDCNKKVIDQQNGL 148
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 65/141 (46%), Gaps = 51/141 (36%)
Query: 616 VTMTLWGKEAETFDASNKPVIAVKAARVSEFQG--------------------------- 648
V+ TLWG++A+ FD S +PV+A+K ARVS+F G
Sbjct: 8 VSATLWGEDADKFDGSRQPVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKLRGWF 67
Query: 649 ------------------------NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNT 684
N + E++ + LG GDKADY S + R N+
Sbjct: 68 DSEGQALDGASISDLRSGGTGSATNWKTLYEVKSENLGQGDKADYFSCVATVVYLRKENS 127
Query: 685 TYKACPSQDCNKKVIDQNNGM 705
Y+ACP+QDCNKKVIDQ NG+
Sbjct: 128 MYQACPTQDCNKKVIDQQNGL 148
>gi|123446475|ref|XP_001311988.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121893818|gb|EAX99058.1| hypothetical protein TVAG_433860 [Trichomonas vaginalis G3]
Length = 659
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/404 (25%), Positives = 183/404 (45%), Gaps = 69/404 (17%)
Query: 444 PIVSLSPYQNK-WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECN 501
PI +L Y + W I+ R+ + + R + N G GKL +I + D+SG IR T FN+ +
Sbjct: 229 PISALCQYTHPGWMIRVRIVSISDPRTYRN--GEGKLMNITMKDDSGTSIRGTFFNENVD 286
Query: 502 RFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC 561
R+ ++ + VY +S +K ANK++++ NDYE+SF +T++ +D G++ ++ +
Sbjct: 287 RWQPKLKLNNVYKVSGGRVKVANKEYNNTGNDYEISFDDATSIEDDQDD--GSISTLSFN 344
Query: 562 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
FV L +AE + +D++G + + + T K T +KR + + D + + + +T +
Sbjct: 345 FVKLDQLAERPDNTTVDIIGWVTTSDQAVTFTSKKGN-TMLKRRLEIADDTNSKIELTFF 403
Query: 622 GKEAETFDASNKPVIAVKAARVSEFQGNLLLMRE-------------------------- 655
G A V+A R+S F+G L M +
Sbjct: 404 GYLANKLPEEPNYVLAAGPCRISPFRGKSLTMFDGNLQVEPAIPETNAIRAWWNQTGQFT 463
Query: 656 -------------------------IQDQQLGMGDKADY-CSVRGIIQVFRGSNTTYKAC 689
I +Q LG +K DY + + ++ Y AC
Sbjct: 464 LGEMKSLSNGDVGMGGNSQTLHLSAIDEQGLGQNEKGDYFMAYVTLAELSSNKKFCYAAC 523
Query: 690 PSQDC-NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNE--AES 746
P++DC NK + +G Y CEKC ++ T +R + I D++ S++ ++ N+ +
Sbjct: 524 PNEDCKNKGLTPNEDGTYFCEKC-QQPKTPRWRWMFNTKISDFSGSLYASVIGNDQVGDL 582
Query: 747 ILGVTAQEVGESTEDHPALKKALFTQYIF------RLRAKLEHY 784
I G E+ + D + FT +F RL A+L++Y
Sbjct: 583 IFGKKVNELHDELADVKDEETMKFTMPLFFRNLKVRLNARLDNY 626
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/331 (27%), Positives = 164/331 (49%), Gaps = 17/331 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK++++ NDYE+SF +T++ +D G++ ++ + FV L +AE + +D++G
Sbjct: 308 ANKEYNNTGNDYEISFDDATSIEDDQDD--GSISTLSFNFVKLDQLAERPDNTTVDIIGW 365
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ + + T K T +KR + + D + + + +T +G A V+A R
Sbjct: 366 VTTSDQAVTFTSKKGN-TMLKRRLEIADDTNSKIELTFFGYLANKLPEEPNYVLAAGPCR 424
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFS-TQTNTRFEPVSQRTGGMGGGAAGN 184
+S F+ GK+L++ L + P IPE + ++ W++ T T E S G +G G
Sbjct: 425 ISPFR-GKSLTM-FDGNLQVEPAIPETNAIRAWWNQTGQFTLGEMKSLSNGDVGMGGNSQ 482
Query: 185 LLLMREIQDQQLGMGDKADY-CSVRGIIQVFRGSNTTYKACPSQDC-NKKVIDQNNGMYR 242
L + I +Q LG +K DY + + ++ Y ACP++DC NK + +G Y
Sbjct: 483 TLHLSAIDEQGLGQNEKGDYFMAYVTLAELSSNKKFCYAACPNEDCKNKGLTPNEDGTYF 542
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNE--AESILGVTAQEVGESTEDHPAL 300
CEKC ++ T +R + I D++ S++ ++ N+ + I G E+ + D
Sbjct: 543 CEKC-QQPKTPRWRWMFNTKISDFSGSLYASVIGNDQVGDLIFGKKVNELHDELADVKDE 601
Query: 301 KKALFTQYIF------RLRAKLEHYNGTKKI 325
+ FT +F RL A+L++Y +I
Sbjct: 602 ETMKFTMPLFFRNLKVRLNARLDNYGMESRI 632
>gi|66363290|ref|XP_628611.1| Rf-A (OB fold protein) [Cryptosporidium parvum Iowa II]
gi|46229828|gb|EAK90646.1| Rf-A (OB fold protein) [Cryptosporidium parvum Iowa II]
Length = 707
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 132/227 (58%), Gaps = 9/227 (3%)
Query: 431 IPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNAR-GSGKLFSIDLLDESG 489
+ R PV +PI +++ Y ++W I RV +K+ IR++++++ GK+FS ++ D G
Sbjct: 202 VSRNQEIPV---YPIKNITSYLHRWRIVGRVVSKSDIRKFSSSKTKEGKVFSFEICDADG 258
Query: 490 -EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
EIRAT F ++F+DM+++ +VY S +K AN +F++ +++E+ F +
Sbjct: 259 SEIRATCFTKAVDKFYDMLKEGEVYSFSRGDVKEANTRFNTTGHEFEIIFNEDAEIQSLP 318
Query: 549 EDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITL 608
+D+ +P + FVP+ I S +++D+LG+ + A ++++T K+ KR++T+
Sbjct: 319 QDD--RIPKKTFNFVPISEIRGYSKGQSLDLLGILLKAGPITTITVKSTGADTQKRELTI 376
Query: 609 VDQSQASVTMTLWGKEAETFDA--SNKPVIAVKAARVSEFQGNLLLM 653
+D+S S+ +TLW + + S PVIAVK A V EF G L +
Sbjct: 377 IDKSGHSIDLTLWSERTHLDEGLISQNPVIAVKNAIVEEFNGFRLKL 423
Score = 109 bits (272), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 158/364 (43%), Gaps = 51/364 (14%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN +F++ +++E+ F + +D+ +P + FVP+ I S +++D+LG+
Sbjct: 293 ANTRFNTTGHEFEIIFNEDAEIQSLPQDD--RIPKKTFNFVPISEIRGYSKGQSLDLLGI 350
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA--SNKPVIAVKA 123
+ A ++++T K+ KR++T++D+S S+ +TLW + + S PVIAVK
Sbjct: 351 LLKAGPITTITVKSTGADTQKRELTIIDKSGHSIDLTLWSERTHLDEGLISQNPVIAVKN 410
Query: 124 ARVSEFQGGKTLSLSMSSVLSLNPD-IPECHKLQGWFSTQTNTR-----FEPVSQRTGGM 177
A V EF G + L L SS + NP + + +L+ WF +Q+N S G
Sbjct: 411 AIVEEFNGFR-LKLGSSSSIEWNPSGVEQSQELKNWFFSQSNLHESVVSLSSSSPSPGNT 469
Query: 178 GGGAAGNLLLMREI------QDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNK 231
++ L + EI M D + G I+ R + + +CP C +
Sbjct: 470 NSSSSAKRLSIDEIVATATSGSSSSDMLDGGIWVHTYGTIRSIRDNKYYWSSCPK--CKR 527
Query: 232 KV--IDQNNGM--------------------YRCEKCNKEFNTFTYRLILPVMIGDWTNS 269
KV I+ N + Y C C + + IL I D T +
Sbjct: 528 KVTEIEDPNSINALVLPYGSEKETSTSLGPNYHCPSCQQSIENPIKKYILSCEIVDSTGT 587
Query: 270 VWVTLFQNEAESILGVTAQEVGES--------TEDHPALKKALFTQYIFRLRAKLEHYNG 321
+ F E+I+ + E ES TED LF++++F+L K E Y
Sbjct: 588 IRAVAFAEHGETIMDGLSPEKLESLKENTDKNTED--CFSDKLFSEWVFKLNGKKELYQD 645
Query: 322 TKKI 325
++ I
Sbjct: 646 SEII 649
>gi|255074989|ref|XP_002501169.1| hypothetical protein MICPUN_57417 [Micromonas sp. RCC299]
gi|226516432|gb|ACO62427.1| hypothetical protein MICPUN_57417 [Micromonas sp. RCC299]
Length = 525
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 121/212 (57%), Gaps = 9/212 (4%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNRF 503
I +L+PY WT+KA++ K IR + NARG + +++ D G I+AT++ D ++
Sbjct: 73 INALNPYMGTWTVKAKLAVKGNIRTFRNARGESSVCTLEFCDAEGTAIQATLWKDAIAKY 132
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPC--NEDEVGNMPSVKYC 561
++E KVYY+S +L+PANKK+SS+NN+YEMS + C + +V M Y
Sbjct: 133 DSILEVGKVYYVSKGSLRPANKKYSSVNNEYEMSLDGRCEIELCADGDADVDKMQRA-YD 191
Query: 562 FVPLKTIA-EISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTL 620
+ +A +I +D+L V +L S+ K++ +RD+TL+D+++ +VT TL
Sbjct: 192 LCKIDQLARKIGGRGTVDILAVVTAVGDLGSIKRKSDGGELQRRDLTLLDETKRTVTCTL 251
Query: 621 WG----KEAETFDASNKPVIAVKAARVSEFQG 648
W ++ E+ PV+A++ RVS++ G
Sbjct: 252 WNSLAVEQGESLKNMVAPVVAIRGVRVSDYNG 283
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 160/347 (46%), Gaps = 30/347 (8%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPC--NEDEVGNMPSVKYCFVPLKTIA-EISPDENID 61
PANKK+SS+NN+YEMS + C + +V M Y + +A +I +D
Sbjct: 151 PANKKYSSVNNEYEMSLDGRCEIELCADGDADVDKMQRA-YDLCKIDQLARKIGGRGTVD 209
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEAETFDASNKP 117
+L V +L S+ K++ +RD+TL+D+++ +VT TLW ++ E+ P
Sbjct: 210 ILAVVTAVGDLGSIKRKSDGGELQRRDLTLLDETKRTVTCTLWNSLAVEQGESLKNMVAP 269
Query: 118 VIAVKAARVSEFQGGKTLSLSMSSVLSLNP---DIP-ECHKLQGWFSTQTNTRFEPVSQR 173
V+A++ RVS++ G +L+ S L L P DI + L+ W+ T E V+
Sbjct: 270 VVAIRGVRVSDYNGVSVSTLARSE-LVLEPASADIATKTAALRAWYDADGAT-AETVAAG 327
Query: 174 TG----GMGGGAAGNLLLMR----EIQDQQLGMGDKADYCSVRG---IIQVFRGSNTTYK 222
G G +G L R +Q + + V G I+ + Y
Sbjct: 328 EGLASARRAGDGSGRSLTERTTFNALQPAIVPAATEPPAIGVVGHSTIVLIKPDQAMYYA 387
Query: 223 ACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESI 282
+ P + NKKV+ G + K ++ YR I+ + + D + W+ +F +A +
Sbjct: 388 SNPEEGNNKKVVPTAEGKWEDPATGKVYDECAYRYIVRMKMSDASGGGWINVFHEQAVEM 447
Query: 283 LGVTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKLEHYNGTKK 324
LG+ A E+ E ++PA +K A F+ + ++AK E Y G +
Sbjct: 448 LGIGAGELHELKTNNPAAYERKIKAAQFSSWNVMVKAKTEEYQGESR 494
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
Y + P + NKKV+ G + K ++ YR I+ + + D + W+ +F +A
Sbjct: 386 YASNPEEGNNKKVVPTAEGKWEDPATGKVYDECAYRYIVRMKMSDASGGGWINVFHEQAV 445
Query: 746 SILGVTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKLEHY 784
+LG+ A E+ E ++PA +K A F+ + ++AK E Y
Sbjct: 446 EMLGIGAGELHELKTNNPAAYERKIKAAQFSSWNVMVKAKTEEY 489
>gi|58372552|gb|AAW71479.1| replication protein A large subunit [Cryptosporidium parvum]
Length = 688
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 132/227 (58%), Gaps = 9/227 (3%)
Query: 431 IPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNAR-GSGKLFSIDLLDESG 489
+ R PV +PI +++ Y ++W I RV +K+ IR++++++ GK+FS ++ D G
Sbjct: 183 VSRNQEIPV---YPIKNITSYLHRWRIVGRVVSKSDIRKFSSSKTKEGKVFSFEICDADG 239
Query: 490 -EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
EIRAT F ++F+DM+++ +VY S +K AN +F++ +++E+ F +
Sbjct: 240 SEIRATCFTKAVDKFYDMLKEGEVYSFSRGDVKEANTRFNTTGHEFEIIFHEDAEIQSLP 299
Query: 549 EDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITL 608
+D+ +P + FVP+ I S +++D+LG+ + A ++++T K+ KR++T+
Sbjct: 300 QDD--RIPKKTFNFVPISEIRGYSKGQSLDLLGILLKAGPITTITVKSTGADTQKRELTI 357
Query: 609 VDQSQASVTMTLWGKEAETFDA--SNKPVIAVKAARVSEFQGNLLLM 653
+D+S S+ +TLW + + S PVIAVK A V EF G L +
Sbjct: 358 IDKSGHSIDLTLWSERTHLDEGLISQNPVIAVKNAIVEEFNGFRLKL 404
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 158/364 (43%), Gaps = 51/364 (14%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN +F++ +++E+ F + +D+ +P + FVP+ I S +++D+LG+
Sbjct: 274 ANTRFNTTGHEFEIIFHEDAEIQSLPQDD--RIPKKTFNFVPISEIRGYSKGQSLDLLGI 331
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA--SNKPVIAVKA 123
+ A ++++T K+ KR++T++D+S S+ +TLW + + S PVIAVK
Sbjct: 332 LLKAGPITTITVKSTGADTQKRELTIIDKSGHSIDLTLWSERTHLDEGLISQNPVIAVKN 391
Query: 124 ARVSEFQGGKTLSLSMSSVLSLNPD-IPECHKLQGWFSTQTNTR-----FEPVSQRTGGM 177
A V EF G + L L SS + NP + + +L+ WF +Q+N S G
Sbjct: 392 AIVEEFNGFR-LKLGSSSSIEWNPSGVEQSQELKNWFFSQSNLHESVVSLSSSSPSPGNT 450
Query: 178 GGGAAGNLLLMREI------QDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNK 231
++ L + EI M D + G I+ R + + +CP C +
Sbjct: 451 NSSSSAKRLSIDEIVATATSGSSSSDMLDGGIWVHTYGTIRSIRDNKYYWSSCPK--CKR 508
Query: 232 KV--IDQNNGM--------------------YRCEKCNKEFNTFTYRLILPVMIGDWTNS 269
KV I+ N + Y C C + + IL I D T +
Sbjct: 509 KVTEIEDPNSINALVLPYGSEKETSTSLGPNYHCPSCQQSIENPIKKYILSCEIVDSTGT 568
Query: 270 VWVTLFQNEAESILGVTAQEVGES--------TEDHPALKKALFTQYIFRLRAKLEHYNG 321
+ F E+I+ + E ES TED LF++++F+L K E Y
Sbjct: 569 IRAVAFAEHGETIMDGLSPEKLESLKENTDKNTED--CFSDKLFSEWVFKLNGKKELYQD 626
Query: 322 TKKI 325
++ I
Sbjct: 627 SEII 630
>gi|402073226|gb|EJT68830.1| hypothetical protein GGTG_13608 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 230
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 128/243 (52%), Gaps = 61/243 (25%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
ML+TQ N II D L++ +I++ +++L++L+L +I+ + K+
Sbjct: 1 MLSTQANHIIHDNLLAKGSILK---------------GKNILVLLDLEVIE-SLGVLEKL 44
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQ--------------------- 434
G P + + PA + T G G + P
Sbjct: 45 GEPASVEARGE-------PATSTTIGGTGFYGAKPEPEMEPEVKPQIRNQIPSRGMGGEA 97
Query: 435 ----------------ASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGK 478
AS P +PI S+SPYQ+KW IKARVT+K+ IR W+ GK
Sbjct: 98 GSGGGGGGGGGGRSGPASNPNAVVYPIESISPYQHKWAIKARVTSKSDIRTWHKPSEKGK 157
Query: 479 LFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISN-CTLKPANKKFSSINNDYEMS 537
LFS++LLDE+GEI+AT FN+EC++F++++++++VYYIS+ C ++ A K+F+++ NDYE++
Sbjct: 158 LFSVNLLDETGEIKATGFNNECDKFYELLQENQVYYISSPCRVQMAKKQFTNLPNDYELT 217
Query: 538 FTH 540
H
Sbjct: 218 EAH 220
>gi|335748585|gb|AEH58813.1| replication protein A large subunit [Karenia brevis]
Length = 460
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 113/194 (58%), Gaps = 6/194 (3%)
Query: 437 APVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDE-SGEIRATM 495
A V Q PI +SPY KWTIKARVT+K P+R + + GK+FS+DLLD GEIR+T
Sbjct: 2 AAVDQFFPISEISPYHTKWTIKARVTSKAPVRTFG--KSGGKVFSVDLLDALGGEIRSTF 59
Query: 496 FNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNM 555
FN ++F D+++ + S ++ A+++++++N+ YE+ F + P ++ G +
Sbjct: 60 FNQAADKFLDVLKPGACFTFSKGRVRIADRRYTALNHRYELIFDADAIIEPAKDE--GTI 117
Query: 556 PSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQAS 615
++K+ L+ I + +D+ GV L +V K Q+ +KRDIT+ D + S
Sbjct: 118 EALKFNITSLRAIQSKTLPCGVDLCGVVTAVRPLMTVRNKEGQE-LLKRDITIADDTATS 176
Query: 616 VTMTLWGKEAETFD 629
+T+TLW + A+ D
Sbjct: 177 MTVTLWAERAKQED 190
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 95/352 (26%), Positives = 168/352 (47%), Gaps = 47/352 (13%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A+++++++N+ YE+ F + P ++ G + ++K+ L+ I + +D+ GV
Sbjct: 87 ADRRYTALNHRYELIFDADAIIEPAKDE--GTIEALKFNITSLRAIQSKTLPCGVDLCGV 144
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA--SNKPVIAVKA 123
L +V K Q+ +KRDIT+ D + S+T+TLW + A+ D PV+ VK
Sbjct: 145 VTAVRPLMTVRNKEGQE-LLKRDITIADDTATSMTVTLWAERAKQEDRVFEGYPVVGVKG 203
Query: 124 ARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRTGGMG---- 178
V E+ GG+ SL S L P E ++Q W+S +++ +SQ TGG G
Sbjct: 204 VTVKEWNGGRGGSLLASGALVFKPTFEEAKRVQQWWSEGGSSQTLLDISQTTGGDGGGRN 263
Query: 179 -GGAAGNLLLMREIQDQQLGMGDKADYCSVR---GIIQVFRGSNT---TYKAC--PSQD- 228
AA L +R+ D+ + D+ + SV I+Q+ + Y AC P ++
Sbjct: 264 RNAAAATLAGVRQAADR---LTDQPEIFSVAARLAIVQMRKQGEVQPLQYLACQEPRENS 320
Query: 229 ---CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGV 285
CN++V ++G C CN+ RL + D+ + W+T F A+ +LG+
Sbjct: 321 SLPCNRRV--DSSGF--CSFCNRA-GKVAARLNIRCRFVDFEDQAWMTTFHEAAQRVLGM 375
Query: 286 TAQ-----------EVGESTEDHPALKKALFTQYIFR-----LRAKLEHYNG 321
+A+ E+ + + L+ A+ +Y + +RAKL+ YNG
Sbjct: 376 SAEDVRAMEQGTGDEMADGEDRREKLEAAVRARYFEKPLSLVVRAKLDTYNG 427
>gi|67603419|ref|XP_666551.1| replication protein A 70kDa [Cryptosporidium hominis TU502]
gi|54657572|gb|EAL36324.1| replication protein A 70kDa [Cryptosporidium hominis]
Length = 686
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 132/227 (58%), Gaps = 9/227 (3%)
Query: 431 IPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNAR-GSGKLFSIDLLDESG 489
+ R PV +PI +++ Y ++W I RV +K+ IR++++++ GK+FS ++ D G
Sbjct: 181 VSRNQEIPV---YPIKNITSYLHRWRIVGRVVSKSDIRKFSSSKTKEGKVFSFEICDADG 237
Query: 490 -EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
EIRAT F ++F+D++++ +VY S +K AN +F++ +++E+ F +
Sbjct: 238 SEIRATCFTKAVDKFYDVLKEGEVYSFSRGDVKEANTRFNTTGHEFEIIFNEDAEIQSLP 297
Query: 549 EDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITL 608
+D+ +P + FVP+ I S +++D+LG+ + A ++++T K+ KR++T+
Sbjct: 298 QDD--RIPKKTFNFVPISEIRGYSKGQSLDLLGILLKAGPITTITVKSTGADTQKRELTI 355
Query: 609 VDQSQASVTMTLWGKEAETFDA--SNKPVIAVKAARVSEFQGNLLLM 653
+D+S S+ +TLW + + S PVIAVK A V EF G L +
Sbjct: 356 IDKSGHSIDLTLWSERTHLDEGLISQNPVIAVKNAIVEEFNGFRLKL 402
Score = 109 bits (272), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 158/364 (43%), Gaps = 51/364 (14%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN +F++ +++E+ F + +D+ +P + FVP+ I S +++D+LG+
Sbjct: 272 ANTRFNTTGHEFEIIFNEDAEIQSLPQDD--RIPKKTFNFVPISEIRGYSKGQSLDLLGI 329
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA--SNKPVIAVKA 123
+ A ++++T K+ KR++T++D+S S+ +TLW + + S PVIAVK
Sbjct: 330 LLKAGPITTITVKSTGADTQKRELTIIDKSGHSIDLTLWSERTHLDEGLISQNPVIAVKN 389
Query: 124 ARVSEFQGGKTLSLSMSSVLSLNPD-IPECHKLQGWFSTQTNTR-----FEPVSQRTGGM 177
A V EF G + L L SS + NP + + +L+ WF +Q+N S G
Sbjct: 390 AIVEEFNGFR-LKLGSSSSIEWNPSGVEQSQELKNWFFSQSNLHESVVSLSSSSPSPGNT 448
Query: 178 GGGAAGNLLLMREI------QDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNK 231
++ L + EI M D + G I+ R + + +CP C +
Sbjct: 449 NSNSSAKRLSIDEIVATATSGSSSSDMLDGGIWVHTYGTIRSIRDNKYYWSSCPK--CKR 506
Query: 232 KV--IDQNNGM--------------------YRCEKCNKEFNTFTYRLILPVMIGDWTNS 269
KV I+ N + Y C C + + IL I D T +
Sbjct: 507 KVTEIEDPNSINALVLPYGSEKETSTSLGPNYHCPSCQQSIENPIKKYILSCEIVDSTGT 566
Query: 270 VWVTLFQNEAESILGVTAQEVGES--------TEDHPALKKALFTQYIFRLRAKLEHYNG 321
+ F E+I+ + E ES TED LF++++F+L K E Y
Sbjct: 567 IRAVAFAEHGETIMDGLSPEKLESLKENTDKNTED--CFSDKLFSEWVFKLNGKKELYQD 624
Query: 322 TKKI 325
++ I
Sbjct: 625 SEII 628
>gi|156312429|ref|XP_001617826.1| hypothetical protein NEMVEDRAFT_v1g225758 [Nematostella vectensis]
gi|156195990|gb|EDO25726.1| predicted protein [Nematostella vectensis]
Length = 115
Score = 129 bits (323), Expect = 8e-27, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 83/116 (71%), Gaps = 1/116 (0%)
Query: 181 AAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGM 240
G L + +I+++QLGMG+KADY SV+G+ FR N YKACPS++CNKKVI++++G
Sbjct: 1 GGGPLKFLSQIKNEQLGMGEKADYISVKGVCVYFRRENCMYKACPSEECNKKVIEEDSGF 60
Query: 241 YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 296
Y CEKC +++ + YRLIL + D+T S WVT FQ AE++LG +A ++G+ E+
Sbjct: 61 Y-CEKCGRKYPNYKYRLILSAHLADFTGSQWVTCFQESAEALLGRSASDLGQMKEN 115
Score = 129 bits (323), Expect = 9e-27, Method: Composition-based stats.
Identities = 56/114 (49%), Positives = 83/114 (72%), Gaps = 1/114 (0%)
Query: 648 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 707
G L + +I+++QLGMG+KADY SV+G+ FR N YKACPS++CNKKVI++++G Y
Sbjct: 3 GPLKFLSQIKNEQLGMGEKADYISVKGVCVYFRRENCMYKACPSEECNKKVIEEDSGFY- 61
Query: 708 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 761
CEKC +++ + YRLIL + D+T S WVT FQ AE++LG +A ++G+ E+
Sbjct: 62 CEKCGRKYPNYKYRLILSAHLADFTGSQWVTCFQESAEALLGRSASDLGQMKEN 115
>gi|384494556|gb|EIE85047.1| hypothetical protein RO3G_09757 [Rhizopus delemar RA 99-880]
Length = 500
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 121/242 (50%), Gaps = 14/242 (5%)
Query: 86 KRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSL 145
KR + ++D ++ + +T+WG AE FD++N P+IA K RV+E+ G++LSL L+
Sbjct: 254 KRSLLIIDDTEHPIQLTVWGSVAEEFDSNNTPIIACKGLRVNEY-NGRSLSLPTFGTLTK 312
Query: 146 NPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQ--DQQLGMGDKAD 203
NP IPE H L WFS + + +S ++ G N+ + +Q + L D
Sbjct: 313 NPSIPEAHHLYQWFSFKKQNIQQLISLKS---LKGEKDNIPWINLVQLYNGHLNTSYTLD 369
Query: 204 YCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMI 263
Y RG I + Y CP+ C KK + Q + CE+C K + +R +L I
Sbjct: 370 YFMFRGTISYIKHDTIAYPGCPT--CAKK-LQQKESSWECEQCKKILSVPNWRYVLFAGI 426
Query: 264 GDWTNSVWVTLFQNEAESILGVTAQEVGESTED-----HPALKKALFTQYIFRLRAKLEH 318
D++ + T+F N A I+G+TA E+ + + KALF Y F+ RAK
Sbjct: 427 SDFSGQAFFTIFDNVAVHIIGMTAAELLKIADRSMEIFQKEFTKALFKTYNFKARAKAVQ 486
Query: 319 YN 320
YN
Sbjct: 487 YN 488
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 116/563 (20%), Positives = 208/563 (36%), Gaps = 168/563 (29%)
Query: 297 HPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDIITDGTLSEFTIV 356
+P K + FR+ H + DG++ L L +I +G + + +IV
Sbjct: 20 NPLTKDPILQLINFRVVLLNGHVRYKAIVSDGIHFIP-GWLYVCLGVLIENGQIKKNSIV 78
Query: 357 QIKRYIVSGVSSGSATNRSVLIILELNII------KPGTEIGFKIGNPQPLNTNTDNSST 410
++K Y S +N+ ++I +++ + K G I ++G+ + TN
Sbjct: 79 RVKEY-----SCNLISNKKWMLIQKVDFLSTDVQEKVGKPISIELGSASTMITNVQQWRL 133
Query: 411 QQTPAA------------TNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIK 458
++ + T+ S+ ++ +P P+ PI L+PYQ+
Sbjct: 134 KRRDPPECQFQREMCIFESKTSASDITRASMPLP---DLPIT---PIKHLNPYQH----- 182
Query: 459 ARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNC 518
+ ++E A I L+ GEI+AT FN + C
Sbjct: 183 --IGTTIEVKELCLAL-------ISLIKVYGEIKATAFNGQ------------------C 215
Query: 519 TLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENID 578
+ A +P + FV + + + DE ++
Sbjct: 216 AIDSA-------------------------------IPQTNFSFVKIIDLEKTEKDETVE 244
Query: 579 VLGVCIDAAELSSVTG-KTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIA 637
+++TG + N KR + ++D ++ + +T+WG AE FD++N P+IA
Sbjct: 245 -----------NNLTGWQIN-----KRSLLIIDDTEHPIQLTVWGSVAEEFDSNNTPIIA 288
Query: 638 VKAARVSEFQG-----------------------------------NLLLMREIQDQQ-- 660
K RV+E+ G L+ ++ ++ ++
Sbjct: 289 CKGLRVNEYNGRSLSLPTFGTLTKNPSIPEAHHLYQWFSFKKQNIQQLISLKSLKGEKDN 348
Query: 661 -------------LGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 707
L DY RG I + Y CP+ C KK + Q +
Sbjct: 349 IPWINLVQLYNGHLNTSYTLDYFMFRGTISYIKHDTIAYPGCPT--CAKK-LQQKESSWE 405
Query: 708 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED-----H 762
CE+C K + +R +L I D++ + T+F N A I+G+TA E+ + +
Sbjct: 406 CEQCKKILSVPNWRYVLFAGISDFSGQAFFTIFDNVAVHIIGMTAAELLKIADRSMEIFQ 465
Query: 763 PALKKALFTQYIFRLRAKLEHYN 785
KALF Y F+ RAK YN
Sbjct: 466 KEFTKALFKTYNFKARAKAVQYN 488
>gi|321465251|gb|EFX76253.1| hypothetical protein DAPPUDRAFT_249126 [Daphnia pulex]
Length = 182
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 91/141 (64%), Gaps = 2/141 (1%)
Query: 511 KVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE 570
KVYYIS LK ANK++S I NDYEM+F +TTV C DE +P + + F+P+ +
Sbjct: 31 KVYYISQAKLKAANKQYSKIKNDYEMTFNKNTTVYTC--DEATKIPPITFNFLPIAQLPN 88
Query: 571 ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA 630
+ D IDV+GV A ++ +T KT + R++ +VD + A V +TLWGK AE FDA
Sbjct: 89 MDKDSVIDVIGVVKSAKDVRCITSKTTKTELKLREVQMVDSTNAEVNLTLWGKLAEEFDA 148
Query: 631 SNKPVIAVKAARVSEFQGNLL 651
++KPV+A+K A++S+F G L
Sbjct: 149 TSKPVVALKGAKLSDFGGRSL 169
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 92/141 (65%), Gaps = 3/141 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK++S I NDYEM+F +TTV C DE +P + + F+P+ + + D IDV+GV
Sbjct: 43 ANKQYSKIKNDYEMTFNKNTTVYTC--DEATKIPPITFNFLPIAQLPNMDKDSVIDVIGV 100
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
A ++ +T KT + R++ +VD + A V +TLWGK AE FDA++KPV+A+K A+
Sbjct: 101 VKSAKDVRCITSKTTKTELKLREVQMVDSTNAEVNLTLWGKLAEEFDATSKPVVALKGAK 160
Query: 126 VSEFQGGKTLSLSMSSVLSLN 146
+S+F GG++L S+V+ LN
Sbjct: 161 LSDF-GGRSLGTVSSTVVQLN 180
>gi|449532803|ref|XP_004173368.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Cucumis sativus]
Length = 374
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 93/154 (60%), Gaps = 14/154 (9%)
Query: 400 PLNTNT---DNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWT 456
PLN+N QQ P+ + G + N A PR PI +L+PYQ +WT
Sbjct: 231 PLNSNAYARPQPIYQQPPSMYSNRGP--IAKNEAAPR--------IMPISALNPYQGRWT 280
Query: 457 IKARVTNKTPIREWNNARGSGKLFSIDLLDE-SGEIRATMFNDECNRFHDMIEKDKVYYI 515
IKARVT+K +R +NN RG GK+FS DLLD GEIR T FN ++F++ IE KVY+I
Sbjct: 281 IKARVTSKGELRHYNNPRGDGKVFSFDLLDAYRGEIRVTCFNTVADQFYNQIESGKVYFI 340
Query: 516 SNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNE 549
S +LKPA K F+ + NDYE+ +++T+ PC E
Sbjct: 341 SKGSLKPAQKNFNHLKNDYEIFLENTSTIQPCFE 374
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 9/74 (12%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG + ML TQLN+++ G L + +IV++++Y+ + V R ++I++EL++
Sbjct: 55 VSDGTHFQQ-GMLGTQLNELVKSGKLQKGSIVRLRQYVCNPVQ-----ERLIIIVIELDV 108
Query: 385 IKPGTEIGFKIGNP 398
I+ +I IG P
Sbjct: 109 IEEMCDI---IGEP 119
>gi|82539990|ref|XP_724343.1| replication A protein [Plasmodium yoelii yoelii 17XNL]
gi|23478957|gb|EAA15908.1| putative replication A protein [Plasmodium yoelii yoelii]
Length = 1168
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 124/215 (57%), Gaps = 11/215 (5%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI LS Y KW IKARV +K IR++ GK+F+I+L DESGEI+ F +++
Sbjct: 708 PINKLSQYSTKWIIKARVQSKDNIRKFYTGNKEGKVFNIELCDESGEIKVNFFGKAVDKW 767
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+D +E K+Y IS +K ANKKF+++ +D E++ ++ + E+++ N+P Y F
Sbjct: 768 YDYLEVGKIYKISKGNIKSANKKFNTLKHDCEITLDENSILELLEENDM-NIPKYIYNFY 826
Query: 564 PLKTIAEISPDEN----IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
+I+EI + N +DV+G+ + EL+ + K + K+D+ L+D++ ++ +T
Sbjct: 827 ---SISEIKANMNTGTLVDVIGIVLSFQELNQILIKKTGQYKEKKDLMLIDETNETINVT 883
Query: 620 LWGKEA---ETFDASNKPVIAVKAARVSEFQGNLL 651
LWG+ A E + + +I K +V E+QG L
Sbjct: 884 LWGENAVKMEEMNITENCIICFKCLKVGEWQGKKL 918
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 169/349 (48%), Gaps = 48/349 (13%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN----ID 61
ANKKF+++ +D E++ ++ + E+++ N+P Y F +I+EI + N +D
Sbjct: 787 ANKKFNTLKHDCEITLDENSILELLEENDM-NIPKYIYNFY---SISEIKANMNTGTLVD 842
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA---ETFDASNKPV 118
V+G+ + EL+ + K + K+D+ L+D++ ++ +TLWG+ A E + + +
Sbjct: 843 VIGIVLSFQELNQILIKKTGQYKEKKDLMLIDETNETINVTLWGENAVKMEEMNITENCI 902
Query: 119 IAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMG 178
I K +V E+QG K S + V +NP++ + + L+ W+ + ++ T
Sbjct: 903 ICFKCLKVGEWQGKKLESHPKTKV-EINPELDKAYTLKNWWVNNKKNVYNTINLTTTTSN 961
Query: 179 GGAAGNLLLMREIQD--------QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCN 230
NL + IQ+ + + K + G I + Y ACP +CN
Sbjct: 962 NNML-NLESQKTIQEIKKNVNLANEEVLSGKGIIFTTFGFIDHIYNAIPVYSACP--NCN 1018
Query: 231 KKVI-----------DQN--NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQN 277
KK++ DQN MY C KCNK N Y + + I D T+S+ V+ F N
Sbjct: 1019 KKMVATVIEDGEQDMDQNVSESMY-CAKCNKN-NIPVYNYSINLKITDNTDSLRVSAFAN 1076
Query: 278 EAESIL-GVTAQEV---------GESTEDHPALKKALFTQYIFRLRAKL 316
A++I+ G++A+E E+ E+ ++KA ++ FR++A +
Sbjct: 1077 SAKTIMNGLSAEEFMKLRQEYISQENIENFDLIEKAKLNEFFFRIKAYM 1125
>gi|403359819|gb|EJY79566.1| hypothetical protein OXYTRI_23155 [Oxytricha trifallax]
Length = 1367
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 120/236 (50%), Gaps = 16/236 (6%)
Query: 434 QASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIR 492
QA +V T PI +LS + W IKAR+ K + W N R G L +IDL+D G +I+
Sbjct: 257 QAGDDLVFT-PIKALSTFHYDWRIKARIIKKYEKKTWKNQRNEGSLMNIDLMDSFGTQIQ 315
Query: 493 ATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEV 552
AT F D +F DMI++ +Y SN +K AN+KF+SI ND+ + F + +D
Sbjct: 316 ATFFRDALIKFGDMIKEGHIYLFSNGQVKLANQKFTSIKNDFCLVFDKQADIKEVPDDTS 375
Query: 553 GNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS 612
N Y FV +K I + + +D++ V I+ L + K Q +KR IT+ D S
Sbjct: 376 INQNG--YNFVTVKDILTMEKSKVVDIIAVIINPGNLIELQTKAGQNK-VKRLITIADDS 432
Query: 613 QASVTMTLWGKEAETFD-ASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKA 667
SV + W + A FD V+A++ RV +FQG +QL GD A
Sbjct: 433 YMSVNVCFWTESASKFDLLEGNHVVALRGVRVVDFQG----------KQLNFGDDA 478
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 158/350 (45%), Gaps = 26/350 (7%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN+KF+SI ND+ + F + +D N Y FV +K I + + +D++ V
Sbjct: 346 ANQKFTSIKNDFCLVFDKQADIKEVPDDTSINQNG--YNFVTVKDILTMEKSKVVDIIAV 403
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA-SNKPVIAVKAA 124
I+ L + K Q +KR IT+ D S SV + W + A FD V+A++
Sbjct: 404 IINPGNLIELQTKAGQNK-VKRLITIADDSYMSVNVCFWTESASKFDLLEGNHVVALRGV 462
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST-QTNTRFEPV--SQRTGGMGGGA 181
RV +FQG K L+ + + + D P ++L+ WF +N + S +
Sbjct: 463 RVVDFQG-KQLNFGDDAQMIKDFDHPRTYQLKKWFENLNSNDIIRSINKSDKESPKKASN 521
Query: 182 AGNLLLMREIQDQ-------QLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDCNKKV 233
+ L+ E+ +Q Q + ++ I R + Y ACP + CN+KV
Sbjct: 522 KDSTQLVAELLEQLNLNEPEQNSYAKSNKFFTINCNIAYIRNDDKVLYLACPEETCNRKV 581
Query: 234 IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV--- 290
I++ +Y+CE CN+ ++ +L V + D ++S++V ++ I+ +A E+
Sbjct: 582 IEEQPNVYKCEFCNRTYDRCVPTYMLMVKLQDQSDSIYVNFYRELGSQIMAASANEIKRL 641
Query: 291 ---GESTEDHPALKKALFTQYIFRLRAK---LEHYNGTKKIPDGVNINSF 334
+ T+ + F Y ++AK + + NG+ + D N SF
Sbjct: 642 KDENQHTQISDQFFDSQFKNYQILIKAKQSAVPNQNGS-NVSDDNNRTSF 690
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
Y ACP + CN+KVI++ +Y+CE CN+ ++ +L V + D ++S++V ++
Sbjct: 569 YLACPEETCNRKVIEEQPNVYKCEFCNRTYDRCVPTYMLMVKLQDQSDSIYVNFYRELGS 628
Query: 746 SILGVTAQEV 755
I+ +A E+
Sbjct: 629 QIMAASANEI 638
>gi|403350046|gb|EJY74468.1| hypothetical protein OXYTRI_04276 [Oxytricha trifallax]
Length = 1442
Score = 126 bits (317), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 120/236 (50%), Gaps = 16/236 (6%)
Query: 434 QASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIR 492
QA +V T PI +LS + W IKAR+ K + W N R G L +IDL+D G +I+
Sbjct: 257 QAGDDLVFT-PIKALSTFHYDWRIKARIIKKYEKKTWKNQRNEGSLMNIDLMDSFGTQIQ 315
Query: 493 ATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEV 552
AT F D +F DMI++ +Y SN +K AN+KF+SI ND+ + F + +D
Sbjct: 316 ATFFRDALIKFGDMIKEGHIYLFSNGQVKLANQKFTSIKNDFCLVFDKQADIKEVPDDTS 375
Query: 553 GNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS 612
N Y FV +K I + + +D++ V I+ L + K Q +KR IT+ D S
Sbjct: 376 INQNG--YNFVTVKDILTMEKSKVVDIIAVIINPGNLIELQTKAGQNK-VKRLITIADDS 432
Query: 613 QASVTMTLWGKEAETFD-ASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKA 667
SV + W + A FD V+A++ RV +FQG +QL GD A
Sbjct: 433 YMSVNVCFWTESASKFDLLEGNHVVALRGVRVVDFQG----------KQLNFGDDA 478
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 158/350 (45%), Gaps = 26/350 (7%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN+KF+SI ND+ + F + +D N Y FV +K I + + +D++ V
Sbjct: 346 ANQKFTSIKNDFCLVFDKQADIKEVPDDTSINQNG--YNFVTVKDILTMEKSKVVDIIAV 403
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA-SNKPVIAVKAA 124
I+ L + K Q +KR IT+ D S SV + W + A FD V+A++
Sbjct: 404 IINPGNLIELQTKAGQNK-VKRLITIADDSYMSVNVCFWTESASKFDLLEGNHVVALRGV 462
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST-QTNTRFEPV--SQRTGGMGGGA 181
RV +FQG K L+ + + + D P ++L+ WF +N + S +
Sbjct: 463 RVVDFQG-KQLNFGDDAQMIKDFDHPRTYQLKKWFENLNSNDIIRSINKSDKESPKKASN 521
Query: 182 AGNLLLMREIQDQ-------QLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDCNKKV 233
+ L+ E+ +Q Q + ++ I R + Y ACP + CN+KV
Sbjct: 522 KDSTQLVAELLEQLNLNEPEQNSYAKSNKFFTINCNIAYIRNDDKVLYLACPEETCNRKV 581
Query: 234 IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV--- 290
I++ +Y+CE CN+ ++ +L V + D ++S++V ++ I+ +A E+
Sbjct: 582 IEEQPNVYKCEFCNRTYDRCVPTYMLMVKLQDQSDSIYVNFYRELGSQIMAASANEIKRL 641
Query: 291 ---GESTEDHPALKKALFTQYIFRLRAK---LEHYNGTKKIPDGVNINSF 334
+ T+ + F Y ++AK + + NG+ + D N SF
Sbjct: 642 KDENQHTQISDQFFDSQFKNYQILIKAKQSAVPNQNGS-NVSDDNNRTSF 690
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
Y ACP + CN+KVI++ +Y+CE CN+ ++ +L V + D ++S++V ++
Sbjct: 569 YLACPEETCNRKVIEEQPNVYKCEFCNRTYDRCVPTYMLMVKLQDQSDSIYVNFYRELGS 628
Query: 746 SILGVTAQEV 755
I+ +A E+
Sbjct: 629 QIMAASANEI 638
>gi|145353884|ref|XP_001421229.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581466|gb|ABO99522.1| predicted protein, partial [Ostreococcus lucimarinus CCE9901]
Length = 650
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 94/364 (25%), Positives = 166/364 (45%), Gaps = 59/364 (16%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNII--------- 385
+ +LN + G +++FT+++++ YIV+ ++ R +LI+++ ++
Sbjct: 61 GLFGAELNAMCERGEITKFTVLRLREYIVNDLNG-----RRILIVMDAEVMDRYDAVIGQ 115
Query: 386 ----KPGT----EIGFKIGNPQPLNTNTDNSSTQQT-----------------PAATNTN 420
+PGT G G Q + Q P A+
Sbjct: 116 PRVWQPGTGTNASTGMNAGGMQQQRNAYGGAPAAQVEGYGSGGGNGANLATEPPRASGGG 175
Query: 421 GSNGVHNNVAIPRQASAPVVQTH------PIVSLSPYQNKWTIKARVTNKTPIREWNNAR 474
G R+ V + PI +L+PYQN+WTI+AR+T +R ++NA+
Sbjct: 176 YGGGAPAAQGQYRRDGGAVARNEQPRSITPIHALNPYQNRWTIRARITTPLELRSYSNAK 235
Query: 475 GSGKLFSIDLLDESG-EIRATMFNDECNRFHDMIEKDKVYYIS-NCTLKPANKKFSSINN 532
G GK+ +LD G EI+ FND R + + VY IS + P + +++
Sbjct: 236 GEGKVLGFQVLDADGTEIKCVCFNDTAVRLAGELRQGLVYEISKGAIVTPRDPRYAIYQ- 294
Query: 533 DYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSV 592
YE+ + T +PC + E ++ + Y F L + ++ + +DV+G+ +L+++
Sbjct: 295 -YEIKLDNHATFVPCPDAER-DIKKMVYKFKKLSELDALNAGDMVDVIGIAYSVGDLTTI 352
Query: 593 TGKTNQKTYMKRDITLVDQSQASVTMTLW-------GKEAETFDASN-KPVIAVKAARVS 644
+ +T KR + + D S S+ TLW G + E+ AS KPVIAVK++R+
Sbjct: 353 MKRDGSET-SKRSVMIRDDSDTSIEFTLWDPHSVEIGGQIESLIASGEKPVIAVKSSRLG 411
Query: 645 EFQG 648
EFQG
Sbjct: 412 EFQG 415
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 164/327 (50%), Gaps = 27/327 (8%)
Query: 17 YEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVT 76
YE+ + T +PC + E ++ + Y F L + ++ + +DV+G+ +L+++
Sbjct: 295 YEIKLDNHATFVPCPDAER-DIKKMVYKFKKLSELDALNAGDMVDVIGIAYSVGDLTTIM 353
Query: 77 GKTNQKTYMKRDITLVDQSQASVTMTLW-------GKEAETFDASN-KPVIAVKAARVSE 128
+ +T KR + + D S S+ TLW G + E+ AS KPVIAVK++R+ E
Sbjct: 354 KRDGSET-SKRSVMIRDDSDTSIEFTLWDPHSVEIGGQIESLIASGEKPVIAVKSSRLGE 412
Query: 129 FQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLL-- 186
FQ GK + S+++ +NPD E +++ WF + +GG GG +G LL
Sbjct: 413 FQ-GKNMGTVSSTMVEINPDSSEATRMRVWFDQGGADKTFNSLSGSGGGGGKGSGELLSF 471
Query: 187 -LMREIQDQQLGMGDKADYCSVRGIIQVFR--GSNTTYKACP----SQDCNKKV-IDQNN 238
++EI ++ + + Y S GII+ + Y ACP + C KK+ D +
Sbjct: 472 STVKEIGEELVAKNEGVAYLSCCGIIKHIKLGAEGNFYPACPLLNGERTCQKKLRKDDST 531
Query: 239 GMYRCEK-CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH 297
G ++CE+ ++ +R + ++ D ++ WV++F ++ + I G++A E+ E +
Sbjct: 532 GEWKCERHAGEKIEAADWRYMFSMVCMDHSDEYWVSVFGDKGDKIFGISAAEMKEIYDRE 591
Query: 298 PA-----LKKALFTQYIFRLRAKLEHY 319
P + ALF Y R++ +++Y
Sbjct: 592 PERYENMISDALFNDYSLRVKVAVDNY 618
>gi|145353961|ref|XP_001421265.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581502|gb|ABO99558.1| predicted protein, partial [Ostreococcus lucimarinus CCE9901]
Length = 649
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 94/364 (25%), Positives = 166/364 (45%), Gaps = 59/364 (16%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNII--------- 385
+ +LN + G +++FT+++++ YIV+ ++ R +LI+++ ++
Sbjct: 61 GLFGAELNAMCERGEITKFTVLRLREYIVNDLNG-----RRILIVMDAEVMDRYDAVIGQ 115
Query: 386 ----KPGT----EIGFKIGNPQPLNTNTDNSSTQQT-----------------PAATNTN 420
+PGT G G Q + Q P A+
Sbjct: 116 PRVWQPGTGTNASTGMNAGGMQQQRNAYGGAPAAQVEGYGSGGGNGANLATEPPRASGGG 175
Query: 421 GSNGVHNNVAIPRQASAPVVQTH------PIVSLSPYQNKWTIKARVTNKTPIREWNNAR 474
G R+ V + PI +L+PYQN+WTI+AR+T +R ++NA+
Sbjct: 176 YGGGAPAAQGQYRRDGGAVARNEQPRSITPIHALNPYQNRWTIRARITTPLELRSYSNAK 235
Query: 475 GSGKLFSIDLLDESG-EIRATMFNDECNRFHDMIEKDKVYYIS-NCTLKPANKKFSSINN 532
G GK+ +LD G EI+ FND R + + VY IS + P + +++
Sbjct: 236 GEGKVLGFQVLDADGTEIKCVCFNDTAVRLAGELRQGLVYEISKGAIVTPRDPRYAIYQ- 294
Query: 533 DYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSV 592
YE+ + T +PC + E ++ + Y F L + ++ + +DV+G+ +L+++
Sbjct: 295 -YEIKLDNHATFVPCPDAER-DIKKMVYKFKKLSELDALNAGDMVDVIGIAYSVGDLTTI 352
Query: 593 TGKTNQKTYMKRDITLVDQSQASVTMTLW-------GKEAETFDASN-KPVIAVKAARVS 644
+ +T KR + + D S S+ TLW G + E+ AS KPVIAVK++R+
Sbjct: 353 MKRDGSET-SKRSVMIRDDSDTSIEFTLWDPHSVEIGGQIESLIASGEKPVIAVKSSRLG 411
Query: 645 EFQG 648
EFQG
Sbjct: 412 EFQG 415
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 164/327 (50%), Gaps = 27/327 (8%)
Query: 17 YEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVT 76
YE+ + T +PC + E ++ + Y F L + ++ + +DV+G+ +L+++
Sbjct: 295 YEIKLDNHATFVPCPDAER-DIKKMVYKFKKLSELDALNAGDMVDVIGIAYSVGDLTTIM 353
Query: 77 GKTNQKTYMKRDITLVDQSQASVTMTLW-------GKEAETFDASN-KPVIAVKAARVSE 128
+ +T KR + + D S S+ TLW G + E+ AS KPVIAVK++R+ E
Sbjct: 354 KRDGSET-SKRSVMIRDDSDTSIEFTLWDPHSVEIGGQIESLIASGEKPVIAVKSSRLGE 412
Query: 129 FQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLL-- 186
FQ GK + S+++ +NPD E +++ WF + +GG GG +G LL
Sbjct: 413 FQ-GKNMGTVSSTMVEINPDSSEATRMRVWFDQGGADKTFNSLSGSGGGGGKGSGELLSF 471
Query: 187 -LMREIQDQQLGMGDKADYCSVRGIIQVFR--GSNTTYKACP----SQDCNKKV-IDQNN 238
++EI ++ + + Y S GII+ + Y ACP + C KK+ D +
Sbjct: 472 STVKEIGEELVAKNEGVAYLSCCGIIKHIKLGAEGNFYPACPLLNGERTCQKKLRKDDST 531
Query: 239 GMYRCEK-CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH 297
G ++CE+ ++ +R + ++ D ++ WV++F ++ + I G++A E+ E +
Sbjct: 532 GEWKCERHAGEKIEAADWRYMFSMVCMDHSDEYWVSVFGDKGDKIFGISAAEMKEIYDRE 591
Query: 298 PA-----LKKALFTQYIFRLRAKLEHY 319
P + ALF Y R++ +++Y
Sbjct: 592 PERYENMISDALFNDYSLRVKVAVDNY 618
>gi|378755051|gb|EHY65078.1| hypothetical protein NERG_01524 [Nematocida sp. 1 ERTm2]
Length = 569
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 111/393 (28%), Positives = 176/393 (44%), Gaps = 57/393 (14%)
Query: 445 IVSLSPYQNK-WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
I L+P+Q K W+IKA+V +KT +RE+ +GK+FSI + D + F + + F
Sbjct: 150 IKELNPFQQKAWSIKAKVVSKTTVREYMKDGRAGKVFSIIVTDGESKCNIIFFTEFVDGF 209
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPC-NEDEVGNMPSVKYCF 562
D I+ K Y I+ LK ANKK+ +DYE+ S T+ P N MPSV
Sbjct: 210 FDKIQIYKTYEITGGALKLANKKYVEDIHDYEIFVDRSFTITPTENMLNAVKMPSVVTRI 269
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
L+ E + +L V + E+ +V K +Q T KR + + D S +V LW
Sbjct: 270 SRLRE----KMSEVVSLLVVIMTVGEIETVIRKKDQATMKKRTLKVGDDSGEAVPFVLWE 325
Query: 623 KEAETFDASNKPVIAVKAARVSEFQ---------------------------------GN 649
+ A+ D S V+ ++ RVSE+Q G
Sbjct: 326 ETAD-MDFSVGDVLLLENVRVSEYQNMPQIGMARDGIISFNPELPEVFKLKGWYNKNEGT 384
Query: 650 LLLM-------REIQDQQLG--MGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVID 700
+ RE Q +L + +Y +V+ I + Y +CP +CNKKV
Sbjct: 385 FSVAEPRKSVGRERQKTKLEEVKANGMEYATVKCTILYISEKSVMYPSCPMDNCNKKVEH 444
Query: 701 --QNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL-GVTAQEVGE 757
++ Y C KC++ + + + I D T+SVW++LF + A + + A E+ +
Sbjct: 445 PAESPENYYCSKCDRIYTNCSQSYSVSASIADDTSSVWLSLFGDSASVLFNNLKAVEMED 504
Query: 758 -STEDHPALK----KALFTQYIFRLRAKLEHYN 785
STEDH K K++ + + R+R + YN
Sbjct: 505 LSTEDHDEYKKTIAKSIGEEMVIRIRGRETRYN 537
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 156/331 (47%), Gaps = 28/331 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPC-NEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
ANKK+ +DYE+ S T+ P N MPSV L+ E + +L
Sbjct: 229 ANKKYVEDIHDYEIFVDRSFTITPTENMLNAVKMPSVVTRISRLRE----KMSEVVSLLV 284
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V + E+ +V K +Q T KR + + D S +V LW + A+ D S V+ ++
Sbjct: 285 VIMTVGEIETVIRKKDQATMKKRTLKVGDDSGEAVPFVLWEETAD-MDFSVGDVLLLENV 343
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGN 184
RVSE+Q + ++ ++S NP++PE KL+GW++ T +++ G
Sbjct: 344 RVSEYQNMPQIGMARDGIISFNPELPEVFKLKGWYNKNEGTFSVAEPRKSVG-------- 395
Query: 185 LLLMREIQDQQLG--MGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVID--QNNGM 240
RE Q +L + +Y +V+ I + Y +CP +CNKKV ++
Sbjct: 396 ----RERQKTKLEEVKANGMEYATVKCTILYISEKSVMYPSCPMDNCNKKVEHPAESPEN 451
Query: 241 YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL-GVTAQEVGE-STEDHP 298
Y C KC++ + + + I D T+SVW++LF + A + + A E+ + STEDH
Sbjct: 452 YYCSKCDRIYTNCSQSYSVSASIADDTSSVWLSLFGDSASVLFNNLKAVEMEDLSTEDHD 511
Query: 299 ALK----KALFTQYIFRLRAKLEHYNGTKKI 325
K K++ + + R+R + YNG I
Sbjct: 512 EYKKTIAKSIGEEMVIRIRGRETRYNGEPSI 542
>gi|449527292|ref|XP_004170646.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Cucumis sativus]
Length = 425
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 131/248 (52%), Gaps = 23/248 (9%)
Query: 98 SVTMTLWGK--EAE------TFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDI 149
SV +TLWG +AE D+ PV+AVK++RVS+F G ++S S + + PD
Sbjct: 2 SVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSSRVSDFNGKAVGTISTSQLF-IEPDF 60
Query: 150 PECHKLQGWFSTQTNTRFE-PVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVR 208
PE H L+ WF + + +S+ +G + +I+D++LG +K D+ +V
Sbjct: 61 PEAHSLREWFEREGRSTLSVSISREVASVGRTDVRKTI--SQIKDERLGTSEKPDWITVS 118
Query: 209 GIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIG 264
+ + + Y ACP + C+KKV + +G +RC++C++ + YR IL + I
Sbjct: 119 ATVSFIKVDSFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQ 178
Query: 265 DWTNSVWVTLFQNEAESILGVTAQEV----GESTEDHP---ALKKALFTQYIFRLRAKLE 317
D T WVT FQ E I+G+ A+ + E +D ++K LFT++I +L+ K E
Sbjct: 179 DHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEE 238
Query: 318 HYNGTKKI 325
++ +++
Sbjct: 239 TFSDEQRV 246
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 107/240 (44%), Gaps = 69/240 (28%)
Query: 615 SVTMTLWGK--EAE------TFDASNKPVIAVKAARVSEFQGNLL--------------- 651
SV +TLWG +AE D+ PV+AVK++RVS+F G +
Sbjct: 2 SVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSSRVSDFNGKAVGTISTSQLFIEPDFP 61
Query: 652 -----------------------------------LMREIQDQQLGMGDKADYCSVRGII 676
+ +I+D++LG +K D+ +V +
Sbjct: 62 EAHSLREWFEREGRSTLSVSISREVASVGRTDVRKTISQIKDERLGTSEKPDWITVSATV 121
Query: 677 QVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWT 732
+ + Y ACP + C+KKV + +G +RC++C++ + YR IL + I D T
Sbjct: 122 SFIKVDSFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHT 181
Query: 733 NSVWVTLFQNEAESILGVTAQEV----GESTEDHP---ALKKALFTQYIFRLRAKLEHYN 785
WVT FQ E I+G+ A+ + E +D ++K LFT++I +L+ K E ++
Sbjct: 182 GLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFS 241
>gi|302841268|ref|XP_002952179.1| hypothetical protein VOLCADRAFT_105399 [Volvox carteri f.
nagariensis]
gi|300262444|gb|EFJ46650.1| hypothetical protein VOLCADRAFT_105399 [Volvox carteri f.
nagariensis]
Length = 499
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 160/347 (46%), Gaps = 34/347 (9%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE-ISPDENIDVL 63
PA+KK+SS+ DY++ FT T V + + +M + P++ + + +DV+
Sbjct: 133 PADKKYSSVKADYQIDFTERTEVTEAADQDTSSM-TAAVEITPIEVLPRRVGGRMPVDVM 191
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA-----SNKPV 118
GV + L +V K + +RDITL D S SV +TLWG A F K V
Sbjct: 192 GVVLALGPLGTVKRKADSSELPRRDITLGDMSCKSVVLTLWGDNASAFAGQLEGQEGKVV 251
Query: 119 IAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST--QTNTRFEPVSQRTGG 176
+ V RV++F G SL+ SV+SLNP+ +L W+ST RF PV Q G
Sbjct: 252 MQVTHVRVTDFNGCSVSSLT-KSVVSLNPEGSGAAQLLTWYSTAGMVPDRFTPVGQDLPG 310
Query: 177 M-----GGGAAGNLLLMREIQDQQLGMG------DKADYCSVRGIIQVFRGS-NTTYKAC 224
G GA + ++D G+ DKA + +V I + Y A
Sbjct: 311 TRAVSNGSGAVPSRERFFTVKDVA-GISADSLQDDKATFQAVTAYIAMVNSELQMYYLAN 369
Query: 225 PSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILG 284
P + +KV+DQ G + E + +R +L V + D T V LF EAE+++G
Sbjct: 370 P--ENGRKVVDQGGGRW-AEADGRVVERPEHRYVLSVKLADHTGEAVVQLFNKEAEAVMG 426
Query: 285 VTA------QEVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A +E GE E AL+ A + + + +K YNG +++
Sbjct: 427 IKADELAALKEAGEGFE--AALRAAQWRPWSVVVMSKAREYNGERRV 471
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 123/244 (50%), Gaps = 10/244 (4%)
Query: 413 TPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNN 472
TP AT + + N + P + + H I L PY + W IKA+V K P+R +
Sbjct: 23 TPTATPPMSMSSLKNALTPPSTSLSDRKNYHKIAQLHPYDSNWCIKAKVELKAPLRS-MS 81
Query: 473 ARGSG-KLFSIDLLDESGE-IRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSI 530
RGS K+ ++DL+D++G+ I+ T + RF + + + KVY +KPA+KK+SS+
Sbjct: 82 IRGSDVKILTVDLVDDTGQMIQGTFWRAPAERFSESLMEGKVYVFHRFKVKPADKKYSSV 141
Query: 531 NNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIA-EISPDENIDVLGVCIDAAEL 589
DY++ FT T V + + +M + P++ + + +DV+GV + L
Sbjct: 142 KADYQIDFTERTEVTEAADQDTSSM-TAAVEITPIEVLPRRVGGRMPVDVMGVVLALGPL 200
Query: 590 SSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA-----SNKPVIAVKAARVS 644
+V K + +RDITL D S SV +TLWG A F K V+ V RV+
Sbjct: 201 GTVKRKADSSELPRRDITLGDMSCKSVVLTLWGDNASAFAGQLEGQEGKVVMQVTHVRVT 260
Query: 645 EFQG 648
+F G
Sbjct: 261 DFNG 264
Score = 46.6 bits (109), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 665 DKADYCSVRGIIQVFRGS-NTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLI 723
DKA + +V I + Y A P + +KV+DQ G + E + +R +
Sbjct: 344 DKATFQAVTAYIAMVNSELQMYYLANP--ENGRKVVDQGGGRW-AEADGRVVERPEHRYV 400
Query: 724 LPVMIGDWTNSVWVTLFQNEAESILGVTA------QEVGESTEDHPALKKALFTQYIFRL 777
L V + D T V LF EAE+++G+ A +E GE E AL+ A + + +
Sbjct: 401 LSVKLADHTGEAVVQLFNKEAEAVMGIKADELAALKEAGEGFE--AALRAAQWRPWSVVV 458
Query: 778 RAKLEHYN 785
+K YN
Sbjct: 459 MSKAREYN 466
>gi|351700393|gb|EHB03312.1| Replication protein A 70 kDa DNA-binding subunit [Heterocephalus
glaber]
Length = 162
Score = 125 bits (314), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 84/147 (57%), Gaps = 5/147 (3%)
Query: 179 GGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNN 238
G + N + E++ + LG GDKADY S + N Y AC +QDCNKKVIDQ N
Sbjct: 13 GASNNNWKTLYEVKSENLGQGDKADYFSSVATVVYLHKENCMYLACSTQDCNKKVIDQQN 72
Query: 239 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP 298
G+Y CEKC+ EF F YR+IL I D+ + WVT FQ AE+ILG +GE E +
Sbjct: 73 GLYCCEKCDHEFPNFKYRMILLGNILDFQENQWVTCFQESAEAILGQNTAYLGELKEKNK 132
Query: 299 -----ALKKALFTQYIFRLRAKLEHYN 320
+ A F ++F++R KLE YN
Sbjct: 133 QAFEEGFQNANFRSFMFKIRVKLETYN 159
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 81/138 (58%), Gaps = 5/138 (3%)
Query: 653 MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCN 712
+ E++ + LG GDKADY S + N Y AC +QDCNKKVIDQ NG+Y CEKC+
Sbjct: 22 LYEVKSENLGQGDKADYFSSVATVVYLHKENCMYLACSTQDCNKKVIDQQNGLYCCEKCD 81
Query: 713 KEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----ALKK 767
EF F YR+IL I D+ + WVT FQ AE+ILG +GE E + +
Sbjct: 82 HEFPNFKYRMILLGNILDFQENQWVTCFQESAEAILGQNTAYLGELKEKNKQAFEEGFQN 141
Query: 768 ALFTQYIFRLRAKLEHYN 785
A F ++F++R KLE YN
Sbjct: 142 ANFRSFMFKIRVKLETYN 159
>gi|356554165|ref|XP_003545419.1| PREDICTED: LOW QUALITY PROTEIN: replication protein A 70 kDa
DNA-binding subunit-like [Glycine max]
Length = 450
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 151/326 (46%), Gaps = 68/326 (20%)
Query: 478 KLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEM 536
++FS D+ D + GEIRAT FN ++F+++IE KVY IS ++KPA K F+ ++ND E+
Sbjct: 91 QVFSFDVADFDGGEIRATCFNVVADQFYNVIEAGKVYLISKGSIKPAQKNFNHLHNDQEL 150
Query: 537 SFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVC--IDAAELSSVTG 594
+ ++ + P +D ++ S + + P+ I + + +DV+GV +D + T
Sbjct: 151 TLDVASIIQPFLDDN-DSITSQTFNYXPISEIESLENNSIVDVIGVVTLLDRTSIRPTTS 209
Query: 595 --KTNQKTYMKRDITLVDQSQASVTMTLW-------GKEAETF-DASNKPVIAVKAARVS 644
+ N KR + L D S SV +TLW G+ +T DA PV+A KA R++
Sbjct: 210 IMRKNGTEVQKRTLQLKDMSGRSVELTLWGNFCIVEGQRLQTICDAGEFPVLATKAVRLN 269
Query: 645 EFQGN-----------------------------------LLLMRE-------------- 655
+F G L + RE
Sbjct: 270 DFNGKYVETIATSQLYVEADFPEACTLKRWFKNEEKSVPTLSISRELSNLGKTDVRKTIS 329
Query: 656 -IQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKAC----PSQDCNKKVIDQNNGMYRCEK 710
I+D++LG +K D+ SV ++ + N Y C + CNKKV + +G CE+
Sbjct: 330 XIKDEKLGTSEKPDWISVFVVVSHIKVDNFCYPGCLLKIGDRQCNKKVTNNADGTXHCER 389
Query: 711 CNKEFNTFTYRLILPVMIGDWTNSVW 736
CN+ + +R +L + I D T+ W
Sbjct: 390 CNQSIDACDFRYLLSMQIXDHTSITW 415
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 136/284 (47%), Gaps = 21/284 (7%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K F+ ++ND E++ ++ + P +D ++ S + + P+ I + + +DV+G
Sbjct: 136 PAQKNFNHLHNDQELTLDVASIIQPFLDDN-DSITSQTFNYXPISEIESLENNSIVDVIG 194
Query: 65 VC--IDAAELSSVTG--KTNQKTYMKRDITLVDQSQASVTMTLWG-------KEAETF-D 112
V +D + T + N KR + L D S SV +TLWG + +T D
Sbjct: 195 VVTLLDRTSIRPTTSIMRKNGTEVQKRTLQLKDMSGRSVELTLWGNFCIVEGQRLQTICD 254
Query: 113 ASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVS 171
A PV+A KA R+++F G K + +S L + D PE L+ WF + + +S
Sbjct: 255 AGEFPVLATKAVRLNDFNG-KYVETIATSQLYVEADFPEACTLKRWFKNEEKSVPTLSIS 313
Query: 172 QRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKAC----PSQ 227
+ +G + I+D++LG +K D+ SV ++ + N Y C +
Sbjct: 314 RELSNLGKTDVRKTI--SXIKDEKLGTSEKPDWISVFVVVSHIKVDNFCYPGCLLKIGDR 371
Query: 228 DCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW 271
CNKKV + +G CE+CN+ + +R +L + I D T+ W
Sbjct: 372 QCNKKVTNNADGTXHCERCNQSIDACDFRYLLSMQIXDHTSITW 415
>gi|241617732|ref|XP_002408205.1| replication factor A 1, rfa1, putative [Ixodes scapularis]
gi|215502936|gb|EEC12430.1| replication factor A 1, rfa1, putative [Ixodes scapularis]
Length = 347
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 86/129 (66%), Gaps = 2/129 (1%)
Query: 132 GKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAGNLLLMRE 190
G +LS+ SS L +NPDIPE H L GW+S + + + + +S RTGG G AA + + E
Sbjct: 184 GVSLSMIGSSQLQVNPDIPESHALIGWYSNEGASLQTQSLSVRTGGFEGAAA-SWKHLSE 242
Query: 191 IQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEF 250
+ Q+LG GDK DY S + + + R N YKACP++ CNKK+++ NG+YRCEKCN++
Sbjct: 243 AKSQKLGFGDKPDYFSCKASVAIVRKENCLYKACPAEKCNKKLVNLENGLYRCEKCNEQT 302
Query: 251 NTFTYRLIL 259
+ F +RLI+
Sbjct: 303 SEFKWRLIV 311
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 51/72 (70%)
Query: 653 MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCN 712
+ E + Q+LG GDK DY S + + + R N YKACP++ CNKK+++ NG+YRCEKCN
Sbjct: 240 LSEAKSQKLGFGDKPDYFSCKASVAIVRKENCLYKACPAEKCNKKLVNLENGLYRCEKCN 299
Query: 713 KEFNTFTYRLIL 724
++ + F +RLI+
Sbjct: 300 EQTSEFKWRLIV 311
>gi|359484959|ref|XP_003633189.1| PREDICTED: LOW QUALITY PROTEIN: replication factor A protein 1-like
[Vitis vinifera]
Length = 390
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 162/342 (47%), Gaps = 30/342 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE-ISPDENIDVLG 64
ANK+F +++ + ++ V + +E +P K+ FV ++ + ++ E + V G
Sbjct: 25 ANKQFKTVHLHXXNALNENSEVEEGSNEETL-IPXAKFKFVEIEEMGPYVNGKERVYVSG 83
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ETFDASNK-PV 118
V + + K++ KRDIT D+++ +V ++LW A E D ++K P+
Sbjct: 84 VVQSVSPTMRIQRKSHNDIVPKRDITFADKTKKTVVVSLWNDHATNVGQELLDNADKFPI 143
Query: 119 IAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ--------TNTRFEPV 170
+A+K+ +V +FQ +LS S VL +NPD E KL W+ ++ + P
Sbjct: 144 VAIKSLKVGDFQVVSLSTLSESIVL-VNPDTRETKKLISWYDSECKGASMASIGSDISPS 202
Query: 171 SQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDC 229
S+ GG+ + L + LG DK + S+R I + T Y+AC + C
Sbjct: 203 SK--GGVRSMYYDRVSLSHVTSNPSLG-EDKPSFFSIRAYISFIKPDQTMWYRACKT--C 257
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
NKKV D Y CE C K + + R I+ V + D + W++LF ++AE I G +A E
Sbjct: 258 NKKVTDAIGSEYWCEGCQKNDDECSLRYIMVVKVSDASGEAWLSLFNDQAERIFGCSADE 317
Query: 290 V-------GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKK 324
+ GE LK+A++ +FR+ Y K+
Sbjct: 318 LDKLKSQEGEENLFQQKLKEAIWVPQLFRISVAQHEYMNEKR 359
Score = 76.3 bits (186), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 79/343 (23%), Positives = 145/343 (42%), Gaps = 70/343 (20%)
Query: 511 KVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE 570
KVYYIS +K ANK+F +++ + ++ V + +E +P K+ FV ++ +
Sbjct: 13 KVYYISKGAIKVANKQFKTVHLHXXNALNENSEVEEGSNEETL-IPXAKFKFVEIEEMGP 71
Query: 571 -ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA---- 625
++ E + V GV + + K++ KRDIT D+++ +V ++LW A
Sbjct: 72 YVNGKERVYVSGVVQSVSPTMRIQRKSHNDIVPKRDITFADKTKKTVVVSLWNDHATNVG 131
Query: 626 -ETFDASNK-PVIAVKAARVSEFQ--------GNLLLM----REIQD------------Q 659
E D ++K P++A+K+ +V +FQ +++L+ RE +
Sbjct: 132 QELLDNADKFPIVAIKSLKVGDFQVVSLSTLSESIVLVNPDTRETKKLISWYDSECKGAS 191
Query: 660 QLGMGDKADYCSVRGIIQVF--RGSNTTYKACPSQDCNKKVI------------DQNNGM 705
+G S G+ ++ R S + + PS +K DQ
Sbjct: 192 MASIGSDISPSSKGGVRSMYYDRVSLSHVTSNPSLGEDKPSFFSIRAYISFIKPDQTMWY 251
Query: 706 YRCEKCNKEF-----------------NTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL 748
C+ CNK+ + + R I+ V + D + W++LF ++AE I
Sbjct: 252 RACKTCNKKVTDAIGSEYWCEGCQKNDDECSLRYIMVVKVSDASGEAWLSLFNDQAERIF 311
Query: 749 GVTAQEV-------GESTEDHPALKKALFTQYIFRLRAKLEHY 784
G +A E+ GE LK+A++ +FR+ Y
Sbjct: 312 GCSADELDKLKSQEGEENLFQQKLKEAIWVPQLFRISVAQHEY 354
>gi|70941362|ref|XP_740979.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56519062|emb|CAH80613.1| hypothetical protein PC000124.04.0 [Plasmodium chabaudi chabaudi]
Length = 360
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 110/183 (60%), Gaps = 2/183 (1%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI LS Y KW IKARV +K IR++ GK+F+I+L DESGEI+ F +++
Sbjct: 164 PINKLSQYSTKWIIKARVQSKDNIRKFYTGNKEGKVFNIELCDESGEIKVNFFGKAVDKW 223
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+D +E K+Y IS +K ANKKF+++ +D E++ ++ + E+++ N+P Y F
Sbjct: 224 YDYLEVGKIYKISKGNIKSANKKFNTLKHDCEITLDENSILELLEENDM-NIPKYIYNFY 282
Query: 564 PLKTI-AEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
P+ I A I+ +DV+G+ + EL+ + K + K+D+ L+D++ ++ +TLWG
Sbjct: 283 PISEIKANINTGTLVDVIGIVLSFQELNQILIKKTGQYKEKKDLMLIDETNETINVTLWG 342
Query: 623 KEA 625
+ A
Sbjct: 343 ESA 345
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI-AEISPDENIDVLG 64
ANKKF+++ +D E++ ++ + E+++ N+P Y F P+ I A I+ +DV+G
Sbjct: 243 ANKKFNTLKHDCEITLDENSILELLEENDM-NIPKYIYNFYPISEIKANINTGTLVDVIG 301
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA 108
+ + EL+ + K + K+D+ L+D++ ++ +TLWG+ A
Sbjct: 302 IVLSFQELNQILIKKTGQYKEKKDLMLIDETNETINVTLWGESA 345
>gi|412986814|emb|CCO15240.1| predicted protein [Bathycoccus prasinos]
Length = 773
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 116/222 (52%), Gaps = 13/222 (5%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNR 502
P+ +L+PYQ W++ RVT +R W+NA+G GK+ D++D G E++ F D
Sbjct: 143 PLQALNPYQQGWSVCVRVTTPIEVRTWHNAKGEGKVLGFDVVDAEGSEMKVVCFGDCALN 202
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNM--PSVKY 560
+ +++ VY IS TL + +I YEM H+T V P E+ G M P V+Y
Sbjct: 203 LAEKMQQYGVYEISKATLTASRNPRYAIGA-YEMKLDHNTVVQPLPENAQGAMKIPKVQY 261
Query: 561 CFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTL 620
F +K I + D +IDV+GV + + +S +T + KR I L D S A V +TL
Sbjct: 262 NFRNIKEIETLMKDTSIDVMGVVHEVSPISMQMLRTGGEK-AKRSIKLRDDSSAEVELTL 320
Query: 621 WGKEA-------ETFDASNK-PVIAVKAARVSEFQGNLLLMR 654
WG+ A ET N+ P++A K A V EF G L +R
Sbjct: 321 WGEHADGLGQKLETMLFENQHPILACKRACVGEFNGKNLSIR 362
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 100/336 (29%), Positives = 160/336 (47%), Gaps = 29/336 (8%)
Query: 17 YEMSFTHSTTVIPCNEDEVGNM--PSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSS 74
YEM H+T V P E+ G M P V+Y F +K I + D +IDV+GV + + +S
Sbjct: 233 YEMKLDHNTVVQPLPENAQGAMKIPKVQYNFRNIKEIETLMKDTSIDVMGVVHEVSPISM 292
Query: 75 VTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-------ETFDASNK-PVIAVKAARV 126
+T + KR I L D S A V +TLWG+ A ET N+ P++A K A V
Sbjct: 293 QMLRTGGEK-AKRSIKLRDDSSAEVELTLWGEHADGLGQKLETMLFENQHPILACKRACV 351
Query: 127 SEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPV---SQRTGGMGGGAAG 183
EF GK LS+ ++V+ +NPD P+ +L+ W+ T V G GG
Sbjct: 352 GEFN-GKNLSIRNNTVMDVNPDHPKAGQLRSWYDAGGKTEDVQVLSGGMGGAGAVGGRGD 410
Query: 184 NLLLMREIQDQQLGMG-DKADYCSVRGIIQVFRGSNT--TYKACP----SQDCNKKVI-D 235
+R+I+++ G A + RG I S+ Y ACP + C KK+ +
Sbjct: 411 RFATIRQIENEAANGGCSNAFWVVCRGSITYIHNSDNGPMYPACPMDHDGRKCQKKMRQN 470
Query: 236 QNNGMYRCEK-CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-- 292
+ NGM+ CE+ + + +R + V + D++ +V ++F E + G+ A +
Sbjct: 471 EMNGMWECERHYDTVIPSVDWRYLCTVKLADYSGAVMASVFGEVGEKLFGMPAPDFKHLL 530
Query: 293 STEDHPALKKA---LFTQYIFRLRAKLEHYNGTKKI 325
T+ H KK + +Y F+L+ + YN ++
Sbjct: 531 DTDFHAFEKKRDDIRWREYKFKLKVNEDTYNDMTRV 566
>gi|403360589|gb|EJY79974.1| Replication protein A 70 kDa DNA-binding subunit [Oxytricha
trifallax]
Length = 733
Score = 122 bits (306), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 122/229 (53%), Gaps = 18/229 (7%)
Query: 434 QASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSG-----KLFSIDLLDES 488
Q + Q PI +LS W IKAR+T K +R++ R +G K+ +IDL+D
Sbjct: 208 QFAPDYFQFTPISALSQNSQDWRIKARITKKYEMRQYTQTRRNGEKFPGKILNIDLIDGH 267
Query: 489 G-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPC 547
G +I T FND RF I+++KVY IS +K +N+KF++I N++ + FT +
Sbjct: 268 GAQIMGTFFNDTATRFDSKIKENKVYTISGGQIKLSNQKFTAIKNEFCLIFTDHSEFKEA 327
Query: 548 NEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV---CIDAAELSSVTGKTNQKTYMKR 604
+DE ++ SV + FV ++ I + ++ ID +G+ C E +G Q+T
Sbjct: 328 VDDE--SIQSVAFSFVSIQDIKNMYGNKTIDFIGIAQYCQPVKEKQLKSGTKAQRT---- 381
Query: 605 DITLVDQSQASVTMTLWGKEAETFDAS--NKPVIAVKAARVSEFQGNLL 651
+ L D+S ++ + +WG A FD S PVIAVK A +SEF G L
Sbjct: 382 -VYLADESNQTIALCIWGDLANQFDLSIDEHPVIAVKRANLSEFGGRSL 429
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 157/307 (51%), Gaps = 30/307 (9%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
+N+KF++I N++ + FT + +DE ++ SV + FV ++ I + ++ ID +G+
Sbjct: 303 SNQKFTAIKNEFCLIFTDHSEFKEAVDDE--SIQSVAFSFVSIQDIKNMYGNKTIDFIGI 360
Query: 66 ---CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS--NKPVIA 120
C E +G Q+T + L D+S ++ + +WG A FD S PVIA
Sbjct: 361 AQYCQPVKEKQLKSGTKAQRT-----VYLADESNQTIALCIWGDLANQFDLSIDEHPVIA 415
Query: 121 VKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTN-TRFEPVS-QRTGG-- 176
VK A +SEF GG++L+ + S + +NP P +L+ WF+ + ++ ++ Q+ G
Sbjct: 416 VKRANLSEF-GGRSLNSNEDSQVIVNPSHPRTQQLKHWFNHLADPSQLSSITVQKEKGEF 474
Query: 177 ---MGGGAAGNLLLMREIQDQQLGMGDK-------ADYCSVRGIIQVFRGSNTTYK-ACP 225
N + EI + L GDK A Y V I + + + TY ACP
Sbjct: 475 PEEKKSFNFDNQRFLGEIME-ALYSGDKSIVDQSLASYFYVSAYIWILKNDDRTYYLACP 533
Query: 226 SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGV 285
+ DC +KVI+++ G +RC+ C++ + T +L + D +++ ++ ++ E I+G+
Sbjct: 534 NDDCKRKVIEESVG-WRCQSCDRTYQTCIPTYMLSAKLADASDAQFINFYKQEGTLIMGL 592
Query: 286 TAQEVGE 292
A ++ E
Sbjct: 593 PADKLKE 599
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Query: 654 REIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYK-ACPSQDCNKKVIDQNNGMYRCEKCN 712
+ I DQ L A Y V I + + + TY ACP+ DC +KVI+++ G +RC+ C+
Sbjct: 501 KSIVDQSL-----ASYFYVSAYIWILKNDDRTYYLACPNDDCKRKVIEESVG-WRCQSCD 554
Query: 713 KEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE 757
+ + T +L + D +++ ++ ++ E I+G+ A ++ E
Sbjct: 555 RTYQTCIPTYMLSAKLADASDAQFINFYKQEGTLIMGLPADKLKE 599
>gi|359484858|ref|XP_003633177.1| PREDICTED: LOW QUALITY PROTEIN: replication factor A protein 1-like
[Vitis vinifera]
Length = 448
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 160/339 (47%), Gaps = 25/339 (7%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE-ISPDENIDVLG 64
ANK F +++ + ++ V + +E +P K+ FV ++ + ++ E + V G
Sbjct: 84 ANKXFKTVHLHXXNALNENSEVEEGSNEETL-IPXAKFKFVEIEEMGPYVNGKECVYVSG 142
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ETFDASNK-PV 118
V + + K++ KRDIT D+++ +V ++LW A E D ++K P+
Sbjct: 143 VVQSVSPTMRIRRKSHNDIVPKRDITFADKTKKTVVVSLWNDHATNVGQELLDNADKFPI 202
Query: 119 IAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTN-----TRFEPVSQR 173
+A+K+ +V +FQ +LS S VL +NPD E KL W+ ++ + +S
Sbjct: 203 VAIKSLKVGDFQVVSLSTLSESIVL-VNPDTREXKKLISWYDSECKGASMASIRSDISPS 261
Query: 174 TGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDCNKK 232
GG+ + L + LG DK + S+R I + T Y+AC + CNKK
Sbjct: 262 KGGVRSMYYDRVSLSHVTSNPSLG-EDKPSFFSIRAYISFIKPDQTMWYRACKT--CNKK 318
Query: 233 VIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-- 290
V D Y CE C K + + R I+ V + D + W++LF ++AE I G +A E+
Sbjct: 319 VTDAIGSGYWCEGCQKNDDECSLRYIMVVKVSDASGEAWLSLFNDQAERIFGCSADELDK 378
Query: 291 -----GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKK 324
GE LK+A++ +FR+ Y K+
Sbjct: 379 LKSQEGEENLFQQKLKEAIWVPQLFRISVAQHEYMNEKR 417
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 146/343 (42%), Gaps = 71/343 (20%)
Query: 511 KVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE 570
KVYYIS +K ANK F +++ + ++ V + +E +P K+ FV ++ +
Sbjct: 72 KVYYISKGAIKVANKXFKTVHLHXXNALNENSEVEEGSNEETL-IPXAKFKFVEIEEMGP 130
Query: 571 -ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA---- 625
++ E + V GV + + K++ KRDIT D+++ +V ++LW A
Sbjct: 131 YVNGKECVYVSGVVQSVSPTMRIRRKSHNDIVPKRDITFADKTKKTVVVSLWNDHATNVG 190
Query: 626 -ETFDASNK-PVIAVKAARVSEFQ--------GNLLLM----REIQDQQLGMGDK----A 667
E D ++K P++A+K+ +V +FQ +++L+ RE + + + D A
Sbjct: 191 QELLDNADKFPIVAIKSLKVGDFQVVSLSTLSESIVLVNPDTREXK-KLISWYDSECKGA 249
Query: 668 DYCSVRGIIQVFRG----------SNTTYKACPSQDCNKKVI------------DQNNGM 705
S+R I +G S + + PS +K DQ
Sbjct: 250 SMASIRSDISPSKGGVRSMYYDRVSLSHVTSNPSLGEDKPSFFSIRAYISFIKPDQTMWY 309
Query: 706 YRCEKCNKEF-----------------NTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL 748
C+ CNK+ + + R I+ V + D + W++LF ++AE I
Sbjct: 310 RACKTCNKKVTDAIGSGYWCEGCQKNDDECSLRYIMVVKVSDASGEAWLSLFNDQAERIF 369
Query: 749 GVTAQEV-------GESTEDHPALKKALFTQYIFRLRAKLEHY 784
G +A E+ GE LK+A++ +FR+ Y
Sbjct: 370 GCSADELDKLKSQEGEENLFQQKLKEAIWVPQLFRISVAQHEY 412
>gi|209879421|ref|XP_002141151.1| replication factor-A protein 1 [Cryptosporidium muris RN66]
gi|209556757|gb|EEA06802.1| replication factor-A protein 1, putative [Cryptosporidium muris
RN66]
Length = 870
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 137/265 (51%), Gaps = 25/265 (9%)
Query: 400 PLNTNTDNSSTQQTPAATNTN------------GSNGVHNNVAIPRQASAPVVQTHPIVS 447
P+++N S QQ P + N GS G I R PV +PI S
Sbjct: 329 PIHSNPYGRSVQQIPGSGAVNMGHIQRSGPYSSGSRGG----PISRNQDIPV---YPIKS 381
Query: 448 LSPYQNKWTIKARVTNKTPIREWNNARG-SGKLFSIDLLDESG-EIRATMFNDECNRFHD 505
++ Y ++W I RV +K+ +R +++++ GK+FS ++ D G +IRAT F ++F++
Sbjct: 382 ITSYLHRWRIIGRVISKSDVRTFSSSKSKEGKVFSFEICDAEGSQIRATCFTKAVDKFYE 441
Query: 506 MIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPL 565
+++ ++Y S +K AN KF+ + +E+ F + ED +P Y FV +
Sbjct: 442 FLKEGEIYSFSKGDVKEANAKFNKTGHGFEIIFNEDADIQSMPEDS--RIPKKAYNFVSI 499
Query: 566 KTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA 625
I S ++ID+LG+ A+ + ++T K+ KR++T++D+S S+ +TLW +
Sbjct: 500 ADIRNYSKGQSIDILGILWKASPIMTITIKSTGADTQKRELTILDRSGYSIDLTLWSERT 559
Query: 626 ETFDA--SNKPVIAVKAARVSEFQG 648
+ + P+IAVK A + EF G
Sbjct: 560 NLDEGMLAQNPMIAVKNAIIEEFNG 584
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 86/361 (23%), Positives = 154/361 (42%), Gaps = 60/361 (16%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN KF+ + +E+ F + ED +P Y FV + I S ++ID+LG+
Sbjct: 459 ANAKFNKTGHGFEIIFNEDADIQSMPEDS--RIPKKAYNFVSIADIRNYSKGQSIDILGI 516
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA--SNKPVIAVKA 123
A+ + ++T K+ KR++T++D+S S+ +TLW + + + P+IAVK
Sbjct: 517 LWKASPIMTITIKSTGADTQKRELTILDRSGYSIDLTLWSERTNLDEGMLAQNPMIAVKN 576
Query: 124 ARVSEFQGGKTLSLSMSSVLSLNP-DIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAA 182
A + EF G K L ++ + NP +I + +L+ WF ++N + VS + +
Sbjct: 577 AIIEEFNGFK-LKFGPNTSIEWNPINIEQADELRQWFQ-ESNNQNSIVS-----LSANST 629
Query: 183 GNLLLMREIQDQQL--------------GMGDKADYCSVRGIIQVFRGSNTTYKACPSQD 228
GN+ + Q Q + + D + I+ R + + +C +
Sbjct: 630 GNINSVTNSQRQSIEEIIATATSGVNSSDILDGGIWVFTNATIRTIRDNKYFWSSC--RQ 687
Query: 229 CNKKVID---------------QNNG-------MYRCEKCNKEFNTFTYRLILPVMIGDW 266
C +KV + NG Y C C + + IL + D
Sbjct: 688 CKRKVTEIEDPNSVSALILPFSSENGNKVNTGPNYHCPNCQQTIEDPLKKYILSCELIDS 747
Query: 267 TNSVWVTLFQNEAESIL-GVTAQEV-------GESTEDHPALKKALFTQYIFRLRAKLEH 318
T ++ F ESI+ G+ ++ +STED A K F++++F+L + E
Sbjct: 748 TGTLRAVAFAEHGESIMDGLNVDQLESMRNNPEKSTEDIFADKN--FSEWVFKLNGRKEV 805
Query: 319 Y 319
Y
Sbjct: 806 Y 806
>gi|403342085|gb|EJY70353.1| hypothetical protein OXYTRI_08899 [Oxytricha trifallax]
Length = 769
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/360 (24%), Positives = 177/360 (49%), Gaps = 50/360 (13%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANKKF+++ ND+ ++F S+ + +D G++ + + P+ +++ +ID++GV
Sbjct: 383 ANKKFTTVKNDFTLTFEKSSQITEVADD--GSISQETFEYQPISKCEDLTVGASIDLIGV 440
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF-----DASNKPVIA 120
+D ++ K N++ +R IT++D+S S+++T+WG E F + ++A
Sbjct: 441 VLDITSCDTIKLKNNRQK-QRRYITIIDESFCSISLTIWG---EGFCQRMNEVGQGDILA 496
Query: 121 VKAARVSEFQGGKTLSLS--MSSVLSLNPDIPECHKLQGWFSTQTN------TRFEPVSQ 172
+K R+SEF GGKT++++ +S++ +NP P K+ W+ Q + + +S
Sbjct: 497 MKGGRLSEF-GGKTINVADDHASIM-VNPSNPRGKKVYDWYIQQVQGGEESMKQIKHLSN 554
Query: 173 RTGGMGGGAAGNLL-----------------LMREIQDQQLGMGDKADYCSVRGIIQVFR 215
A N++ + +QD+ D+ + + G I + +
Sbjct: 555 LQSSRSDKAELNVVDQSNDKQRRNQLNFICEITSMLQDE--NDVDQQHFFFLNGYISLIK 612
Query: 216 GSNTT-YKACPSQDCNKKVID---QNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW 271
+ Y ACP+ +C +KV + Q YRCE CNK + T ++ I D+T++++
Sbjct: 613 NDDKIFYIACPNDNCRRKVTEEHQQQGQAYRCEACNKVYRTCQPTYMIQAKITDFTDTIY 672
Query: 272 VTLFQNEAESILGVTAQEV----GESTEDHPA--LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ ++ +++G+TAQE +TE+ + LF Q+ ++ K E Y G ++
Sbjct: 673 INFPRDNGTALMGMTAQEFKHFRDRATEEELSAYFDSLLFKQFNIMVKGKFEFYGGENRM 732
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 116/211 (54%), Gaps = 15/211 (7%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDE-SGEIRATMFNDECNR 502
PI +L+ + W I+AR+ K+ R+ N G L ++++D + I AT FND +
Sbjct: 306 PIKALNTFSRDWKIQARIVQKSDKRQTKNG---GSLLKMEIVDRYNTPIEATFFNDAADF 362
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F I KVY + ++K ANKKF+++ ND+ ++F S+ + +D G++ + +
Sbjct: 363 FEHKIHVGKVYDFCDGSIKLANKKFTTVKNDFTLTFEKSSQITEVADD--GSISQETFEY 420
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
P+ +++ +ID++GV +D ++ K N++ +R IT++D+S S+++T+WG
Sbjct: 421 QPISKCEDLTVGASIDLIGVVLDITSCDTIKLKNNRQK-QRRYITIIDESFCSISLTIWG 479
Query: 623 KEAETF-----DASNKPVIAVKAARVSEFQG 648
E F + ++A+K R+SEF G
Sbjct: 480 ---EGFCQRMNEVGQGDILAMKGGRLSEFGG 507
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 66/130 (50%), Gaps = 10/130 (7%)
Query: 665 DKADYCSVRGIIQVFRGSNTT-YKACPSQDCNKKVID---QNNGMYRCEKCNKEFNTFTY 720
D+ + + G I + + + Y ACP+ +C +KV + Q YRCE CNK + T
Sbjct: 597 DQQHFFFLNGYISLIKNDDKIFYIACPNDNCRRKVTEEHQQQGQAYRCEACNKVYRTCQP 656
Query: 721 RLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV----GESTEDHPA--LKKALFTQYI 774
++ I D+T+++++ ++ +++G+TAQE +TE+ + LF Q+
Sbjct: 657 TYMIQAKITDFTDTIYINFPRDNGTALMGMTAQEFKHFRDRATEEELSAYFDSLLFKQFN 716
Query: 775 FRLRAKLEHY 784
++ K E Y
Sbjct: 717 IMVKGKFEFY 726
>gi|123394470|ref|XP_001300571.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121881632|gb|EAX87641.1| hypothetical protein TVAG_226230 [Trichomonas vaginalis G3]
Length = 590
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/418 (24%), Positives = 178/418 (42%), Gaps = 75/418 (17%)
Query: 439 VVQTH--PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSG-KLFSIDLLDESGEIRATM 495
V Q H I SLS Y + +TI ARV K E+ N G K+ ++ L D+SG+I+AT
Sbjct: 146 VAQAHFASISSLSAYISNFTILARVVKK----EFKNLESKGLKILTLILADKSGDIKATA 201
Query: 496 FNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNM 555
+ D +F++++E+++VY I+ + A K+++ +D E++F +T N + +
Sbjct: 202 WRDHAEKFNELVEENQVYAITGGKVSFAKKQYNPTKHDCEITFDGNTKFELVNNADTEEI 261
Query: 556 PSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQAS 615
K+ FV + I ++ D +D++GV ID KT ++ R I + D S
Sbjct: 262 GKTKFNFVKISEIDNLAKDATVDIVGVAIDIQPSQMKRLKTGREVN-HRSIEIADDSDRK 320
Query: 616 VTMTLWGKEAETFDASNKPVIAVKAARVSEFQGN-------------------------- 649
+ + LW + + + P+I +K A++ EF G
Sbjct: 321 IELNLWDRNCDLVQEGSNPIIVLKDAKIGEFNGRKNLTVGTLIQVDPSDIQEANDLREWY 380
Query: 650 --------------------------LLLMREIQDQQLGMGDKADYCSV-RGIIQVFRGS 682
+++++ I D+ LG DY V I +
Sbjct: 381 SGNPSLSSIKALSSTGGVDNSNRRTPIVMIKTIMDENLGGNGHTDYFDVIASIYNITPQR 440
Query: 683 NTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSV-WVTLFQ 741
+ Y ACP++ C+ K + +G CE C R + I D+T +V +V +F
Sbjct: 441 SFFYLACPNEKCSFKGLKDRDGGLFCESCGNMITDPVPRYNYKIGITDFTGTVMFVQVFG 500
Query: 742 N--EAESILGVTAQEVGESTEDHPALKK--ALF---------TQYIFRLRAKLEHYNK 786
+ I+G+ A E + E A K A+ +++FRL+A YN+
Sbjct: 501 GGENIDRIMGMNAAEFKKELESLDAEDKIAAMLDKVTNRLKGKEFMFRLKANENVYNE 558
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 158/348 (45%), Gaps = 21/348 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+++ +D E++F +T N + + K+ FV + I ++ D +D++GV
Sbjct: 229 AKKQYNPTKHDCEITFDGNTKFELVNNADTEEIGKTKFNFVKISEIDNLAKDATVDIVGV 288
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
ID KT ++ R I + D S + + LW + + + P+I +K A+
Sbjct: 289 AIDIQPSQMKRLKTGREVN-HRSIEIADDSDRKIELNLWDRNCDLVQEGSNPIIVLKDAK 347
Query: 126 VSEFQGGKTLSLSMSSVLSLNP-DIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGN 184
+ EF G K +L++ +++ ++P DI E + L+ W+S + TGG+
Sbjct: 348 IGEFNGRK--NLTVGTLIQVDPSDIQEANDLREWYSGNPSLSSIKALSSTGGVDNSNRRT 405
Query: 185 -LLLMREIQDQQLGMGDKADYCSV-RGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
+++++ I D+ LG DY V I + + Y ACP++ C+ K + +G
Sbjct: 406 PIVMIKTIMDENLGGNGHTDYFDVIASIYNITPQRSFFYLACPNEKCSFKGLKDRDGGLF 465
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSV-WVTLFQN--EAESILGVTAQEVGESTEDHPA 299
CE C R + I D+T +V +V +F + I+G+ A E + E A
Sbjct: 466 CESCGNMITDPVPRYNYKIGITDFTGTVMFVQVFGGGENIDRIMGMNAAEFKKELESLDA 525
Query: 300 LKK--ALF---------TQYIFRLRAKLEHYNGTKKIPDGVNINSFAM 336
K A+ +++FRL+A YN I V +N+F +
Sbjct: 526 EDKIAAMLDKVTNRLKGKEFMFRLKANENVYNEKSTIRFNV-VNTFEV 572
>gi|301632434|ref|XP_002945290.1| PREDICTED: hypothetical protein LOC100497369, partial [Xenopus
(Silurana) tropicalis]
Length = 1160
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 97/141 (68%), Gaps = 3/141 (2%)
Query: 19 MSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGK 78
M+F T+VIPC D+ ++P V++ FVP+ + + D +D++G+C +A E++ VT +
Sbjct: 1 MTFNSETSVIPC--DDSADVPMVQFEFVPIGELESKNKDTVLDIIGICKNAEEVTKVTIR 58
Query: 79 TNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLS 138
+N + KR+I L+D S V+ TLWG++A+ FD S +PV+A+K AR+S+F GG++LS+
Sbjct: 59 SNNREVSKRNINLMDSSGKVVSTTLWGEDADKFDGSRQPVVAIKGARLSDF-GGRSLSVL 117
Query: 139 MSSVLSLNPDIPECHKLQGWF 159
SS + +NPDIPE KL+ W
Sbjct: 118 SSSTVMINPDIPEAFKLRAWL 138
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 77/114 (67%), Gaps = 2/114 (1%)
Query: 536 MSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGK 595
M+F T+VIPC D+ ++P V++ FVP+ + + D +D++G+C +A E++ VT +
Sbjct: 1 MTFNSETSVIPC--DDSADVPMVQFEFVPIGELESKNKDTVLDIIGICKNAEEVTKVTIR 58
Query: 596 TNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGN 649
+N + KR+I L+D S V+ TLWG++A+ FD S +PV+A+K AR+S+F G
Sbjct: 59 SNNREVSKRNINLMDSSGKVVSTTLWGEDADKFDGSRQPVVAIKGARLSDFGGR 112
>gi|308813768|ref|XP_003084190.1| replication protein, putative (ISS) [Ostreococcus tauri]
gi|116056073|emb|CAL58606.1| replication protein, putative (ISS) [Ostreococcus tauri]
Length = 566
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/340 (26%), Positives = 168/340 (49%), Gaps = 18/340 (5%)
Query: 2 LAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK--YCFVPLKTIA-EISPDE 58
L+ PA+K++S+ NDYEM+ + C + + + ++ Y FV + ++ +I
Sbjct: 198 LSRPADKRYSTSGNDYEMNLDGKAEIELCTDIDQSSAQKMQRAYAFVSIDKLSTKIGARG 257
Query: 59 NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEAETFDAS 114
N+DV+ V + +ELS++ K++ KR+I L D S ++ MTLWG ++ E A
Sbjct: 258 NVDVVAVVKEVSELSTIRRKSDNTELTKREIVLADDSTKTIRMTLWGDLAVEQGEKLAAM 317
Query: 115 NKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST-QTNTRFEPVSQR 173
P++A+++ RVS++ G ++S S ++ DIP +L+ W++ + T F +
Sbjct: 318 TNPIVAIRSVRVSDYDGVSVGTVSRSDMVIDADDIPRVAELKKWWTEGGSETTFSAAGEG 377
Query: 174 TGGMGGGAAGNLLLMR--EIQDQQLGMG-DKADYCSVRGIIQVFRGSNTT-YKACPSQDC 229
G G ++ M E+Q +++ DK + V + + T Y A P +
Sbjct: 378 LTSAGQGQKRDIETMNLAELQPEEIAPSTDKPVFAWVCAHTILCKPDQTMYYAAVPEEGN 437
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
NKKV+ +++G + CE + ++T R I+ D W+ F +EA + G++A E
Sbjct: 438 NKKVV-ESDGKWYCEANGQTYDTCERRYIMRFKAIDGYEGAWLNAFNDEATKMFGISANE 496
Query: 290 VGESTED-----HPALKKALFTQYIFRLRAKLEHYNGTKK 324
+ E E+ A+KK + + F ++ E Y G K
Sbjct: 497 LHELHENDYKAYENAVKKMTYKHWSFLVKVVTEEYQGELK 536
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 77/135 (57%), Gaps = 7/135 (5%)
Query: 521 KPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK--YCFVPLKTIA-EISPDENI 577
+PA+K++S+ NDYEM+ + C + + + ++ Y FV + ++ +I N+
Sbjct: 200 RPADKRYSTSGNDYEMNLDGKAEIELCTDIDQSSAQKMQRAYAFVSIDKLSTKIGARGNV 259
Query: 578 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEAETFDASNK 633
DV+ V + +ELS++ K++ KR+I L D S ++ MTLWG ++ E A
Sbjct: 260 DVVAVVKEVSELSTIRRKSDNTELTKREIVLADDSTKTIRMTLWGDLAVEQGEKLAAMTN 319
Query: 634 PVIAVKAARVSEFQG 648
P++A+++ RVS++ G
Sbjct: 320 PIVAIRSVRVSDYDG 334
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
Y A P + NKKV+ +++G + CE + ++T R I+ D W+ F +EA
Sbjct: 429 YAAVPEEGNNKKVV-ESDGKWYCEANGQTYDTCERRYIMRFKAIDGYEGAWLNAFNDEAT 487
Query: 746 SILGVTAQEVGESTED-----HPALKKALFTQYIFRLRAKLEHY 784
+ G++A E+ E E+ A+KK + + F ++ E Y
Sbjct: 488 KMFGISANELHELHENDYKAYENAVKKMTYKHWSFLVKVVTEEY 531
>gi|403364199|gb|EJY81856.1| Replication protein A 70 kDa DNAbinding subunit puta [Oxytricha
trifallax]
Length = 636
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 116/217 (53%), Gaps = 8/217 (3%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNR 502
PI +LS + W IKARV K + W N++G G + +I+L+D G +I+AT F D R
Sbjct: 171 PIKALSTFNYDWRIKARVVKKHEKKLWKNSKGEGWIMNIELMDCFGTQIQATFFKDSAER 230
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F +I++ +Y SN ++K AN K++ I ND+ + F + ++ +D ++ + F
Sbjct: 231 FDQIIKEGNIYLFSNGSVKLANHKYTQIRNDFTLVFDKNADIVEVPDD--LSIQEKGFNF 288
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
+ +K I + ++ ID++G+ L V K KR +TL D+S+ + + LWG
Sbjct: 289 LGIKDIMTVEKNKIIDIIGILHQIGPLQEVQTKAGHNK-EKRMLTLADESEMIIQLCLWG 347
Query: 623 KEAETFDASNKP----VIAVKAARVSEFQGNLLLMRE 655
A FD ++ VIA+K +V ++ G L + E
Sbjct: 348 DMAHRFDMMDETCSNHVIAIKGGKVVDYAGKQLNIHE 384
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 155/346 (44%), Gaps = 36/346 (10%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN K++ I ND+ + F + ++ +D ++ + F+ +K I + ++ ID++G+
Sbjct: 251 ANHKYTQIRNDFTLVFDKNADIVEVPDD--LSIQEKGFNFLGIKDIMTVEKNKIIDIIGI 308
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKP----VIAV 121
L V K KR +TL D+S+ + + LWG A FD ++ VIA+
Sbjct: 309 LHQIGPLQEVQTKAGHNK-EKRMLTLADESEMIIQLCLWGDMAHRFDMMDETCSNHVIAI 367
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTN----TRFEPVSQRT--G 175
K +V ++ GK L++ + + L+ P +L+ W+ N +RT
Sbjct: 368 KGGKVVDY-AGKQLNIHEDAYIMLDIPHPRTEQLRAWYDNLQNKDVLKNIVVKKERTENN 426
Query: 176 GMGGGAAGNLLLMREI--------QDQ-QLGM-----GDKADYCSVRGIIQVFRGSNTTY 221
N+ ++ E+ QDQ ++G G+ Y V I + + Y
Sbjct: 427 QAQNKQQENVRMIAEVLDYLNQASQDQSKMGFNQNNNGNVFAYFWVNCQISFIKKDDKLY 486
Query: 222 K-ACPSQDCNKKVI-DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEA 279
ACP ++C KKVI D ++ +RCE CN+ F + +L I D ++S++V ++ +
Sbjct: 487 YLACPEENCRKKVIEDTDSKTFRCESCNQSFQSCVPTYMLMARIIDQSDSIFVNFYREQG 546
Query: 280 ESILGVTAQEVGESTEDHPALK------KALFTQYIFRLRAKLEHY 319
I+ V + + E+ + A F Y ++AK +Y
Sbjct: 547 SQIMSVPPEVIRRIKEEEQEEQLNDIFIDAQFKPYQILIKAKQSNY 592
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 686 YKACPSQDCNKKVI-DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEA 744
Y ACP ++C KKVI D ++ +RCE CN+ F + +L I D ++S++V ++ +
Sbjct: 487 YLACPEENCRKKVIEDTDSKTFRCESCNQSFQSCVPTYMLMARIIDQSDSIFVNFYREQG 546
Query: 745 ESILGVTAQEVGESTEDHPALK------KALFTQYIFRLRAKLEHY 784
I+ V + + E+ + A F Y ++AK +Y
Sbjct: 547 SQIMSVPPEVIRRIKEEEQEEQLNDIFIDAQFKPYQILIKAKQSNY 592
>gi|403340896|gb|EJY69743.1| Replication protein A 70 kDa DNA-binding subunit, putative
[Oxytricha trifallax]
Length = 636
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 116/217 (53%), Gaps = 8/217 (3%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNR 502
PI +LS + W IKARV K + W N++G G + +I+L+D G +I+AT F D R
Sbjct: 171 PIKALSTFNYDWRIKARVVKKHEKKLWKNSKGEGWIMNIELMDCFGTQIQATFFKDSAER 230
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F +I++ +Y SN ++K AN K++ I ND+ + F + ++ +D ++ + F
Sbjct: 231 FDQIIKEGNIYLFSNGSVKLANHKYTQIRNDFTLVFDKNADIVEVPDD--LSIQEKGFNF 288
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
+ +K I + ++ ID++G+ L V K KR +TL D+S+ + + LWG
Sbjct: 289 LGIKDIMTVEKNKIIDIIGILHQIGPLQEVQTKAGHNK-EKRMLTLADESEMIIQLCLWG 347
Query: 623 KEAETFDASNKP----VIAVKAARVSEFQGNLLLMRE 655
A FD ++ VIA+K +V ++ G L + E
Sbjct: 348 DMAHRFDMMDETCSNHVIAIKGGKVVDYAGKQLNIHE 384
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 155/346 (44%), Gaps = 36/346 (10%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN K++ I ND+ + F + ++ +D ++ + F+ +K I + ++ ID++G+
Sbjct: 251 ANHKYTQIRNDFTLVFDKNADIVEVPDD--LSIQEKGFNFLGIKDIMTVEKNKIIDIIGI 308
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKP----VIAV 121
L V K KR +TL D+S+ + + LWG A FD ++ VIA+
Sbjct: 309 LHQIGPLQEVQTKAGHNK-EKRMLTLADESEMIIQLCLWGDMAHRFDMMDETCSNHVIAI 367
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTN----TRFEPVSQRT--G 175
K +V ++ GK L++ + + L+ P +L+ W+ N +RT
Sbjct: 368 KGGKVVDY-AGKQLNIHEDAYIMLDIPHPRTEQLRAWYDNLQNKDVLKNIVVKKERTENN 426
Query: 176 GMGGGAAGNLLLMREI--------QDQ-QLGM-----GDKADYCSVRGIIQVFRGSNTTY 221
N+ ++ E+ QDQ ++G G+ Y V I + + Y
Sbjct: 427 QAQNKQQENVRMIAEVLDYLNQASQDQSKMGFNQNNNGNVFAYFWVNCQISFIKKDDKLY 486
Query: 222 K-ACPSQDCNKKVI-DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEA 279
ACP ++C KKVI D ++ +RCE CN+ F + +L I D ++S++V ++ +
Sbjct: 487 YLACPEENCRKKVIEDTDSKTFRCESCNQSFQSCVPTYMLMARIIDQSDSIFVNFYREQG 546
Query: 280 ESILGVTAQEVGESTEDHPALK------KALFTQYIFRLRAKLEHY 319
I+ V + + E+ + A F Y ++AK +Y
Sbjct: 547 SQIMSVPPEVIRRIKEEEQEEQLNDIFIDAQFKPYQILIKAKQSNY 592
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 686 YKACPSQDCNKKVI-DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEA 744
Y ACP ++C KKVI D ++ +RCE CN+ F + +L I D ++S++V ++ +
Sbjct: 487 YLACPEENCRKKVIEDTDSKTFRCESCNQSFQSCVPTYMLMARIIDQSDSIFVNFYREQG 546
Query: 745 ESILGVTAQEVGESTEDHPALK------KALFTQYIFRLRAKLEHY 784
I+ V + + E+ + A F Y ++AK +Y
Sbjct: 547 SQIMSVPPEVIRRIKEEEQEEQLNDIFIDAQFKPYQILIKAKQSNY 592
>gi|356551666|ref|XP_003544195.1| PREDICTED: LOW QUALITY PROTEIN: replication protein A 70 kDa
DNA-binding subunit-like [Glycine max]
Length = 424
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 147/322 (45%), Gaps = 65/322 (20%)
Query: 478 KLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEM 536
++FS D++D + GEIR T FN ++F+++IE KVY IS ++K A K F+ ++ND E+
Sbjct: 95 QVFSFDVVDSDGGEIRPTCFNAVADQFYNVIEAGKVYLISRGSIKLAQKNFNHLHNDQEL 154
Query: 537 SFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKT 596
+ ++ + P +D ++ S + + P+ I + + +DV+GV +S+ K
Sbjct: 155 TLDVASIIQPFLDDN-DSITSHTFNYCPISEIESLENNNIVDVIGVVTSIRPTTSIMRKN 213
Query: 597 NQKTYMKRDITLVDQSQASVTMTLW-------GKEAETF-DASNKPVIAVKAARVSEFQG 648
K KR + L D S SV +TLW GK +T A P++A KA R+++F G
Sbjct: 214 GTKV-QKRTLXLKDMSGRSVELTLWGNFCIVEGKRLQTICHAGEFPILATKAVRLNDFNG 272
Query: 649 NLL-------------------LMREIQDQ------------------------------ 659
+ L R +++
Sbjct: 273 KSVGTIATSQLYVEADFLEACTLKRWFENEGKSVPTLSISTEMSNMGKTDVRKTISQIKD 332
Query: 660 -QLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKE 714
+LG +K D SV ++ + N Y CP + CNKKV + +G + CE+CN+
Sbjct: 333 EKLGTSEKPDRISVFVVVSHIKVDNFCYPGCPLKIGDRQCNKKVTNNADGTWHCERCNQP 392
Query: 715 FNTFTYRLILPVMIGDWTNSVW 736
+ +R +L + I D T+ W
Sbjct: 393 ISACDFRYLLSMQIQDHTSITW 414
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 134/278 (48%), Gaps = 16/278 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K F+ ++ND E++ ++ + P +D ++ S + + P+ I + + +DV+GV
Sbjct: 141 AQKNFNHLHNDQELTLDVASIIQPFLDDN-DSITSHTFNYCPISEIESLENNNIVDVIGV 199
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG-------KEAETF-DASNKP 117
+S+ K K KR + L D S SV +TLWG K +T A P
Sbjct: 200 VTSIRPTTSIMRKNGTKV-QKRTLXLKDMSGRSVELTLWGNFCIVEGKRLQTICHAGEFP 258
Query: 118 VIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGM 177
++A KA R+++F GK++ +S L + D E L+ WF + + +S T
Sbjct: 259 ILATKAVRLNDF-NGKSVGTIATSQLYVEADFLEACTLKRWFENEGKS-VPTLSISTEMS 316
Query: 178 GGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNKKV 233
G + +I+D++LG +K D SV ++ + N Y CP + CNKKV
Sbjct: 317 NMGKTDVRKTISQIKDEKLGTSEKPDRISVFVVVSHIKVDNFCYPGCPLKIGDRQCNKKV 376
Query: 234 IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW 271
+ +G + CE+CN+ + +R +L + I D T+ W
Sbjct: 377 TNNADGTWHCERCNQPISACDFRYLLSMQIQDHTSITW 414
>gi|282931288|gb|ADB03555.1| replication protein complex A largest subunit [Tetrahymena
thermophila]
Length = 609
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 150/320 (46%), Gaps = 23/320 (7%)
Query: 16 DYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSV 75
D+ ++ + ++ C ED ++P +K ++ + + ID++ V E+ ++
Sbjct: 254 DHTVTVNKESKILICQED--PSIPMIKLNRQFIQDMQNKQKGDLIDLIVVVKADTEVKTM 311
Query: 76 TGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTL 135
K + + KRDI D+S +TLWG+ A+ +DA +I K A++ EF+ K +
Sbjct: 312 ILKKDNQQQSKRDIISFDESLIETEITLWGETAKDYDAKQGDIIVFKDAKIGEFKDKKQI 371
Query: 136 SLSMSSVLSLNPD---IPECHKLQGWFSTQTNTRFEPVSQRTGGMGGG------AAGNLL 186
++ + + +NPD P+ H ++ W+ + + + + + G G + +
Sbjct: 372 NIGYGTQIFMNPDEQLFPQIHDVKKWYLSLNSDQLSTIQKAQGNDTGPREVTSFESSLNI 431
Query: 187 LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKC 246
L EI++ Q K + +RG I + + Y AC S C KK I +NN ++ C C
Sbjct: 432 LKEEIKNLQTDPEMKI-WKEIRGQIMYIKDTPLYYNACFS--CKKK-IARNNEVWTCINC 487
Query: 247 NKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA---QEVGESTEDHPALKKA 303
NK+FN R IL + I D T+++WV+ F + ILGV + E TE KK
Sbjct: 488 NKDFNEPDSRYILSLNISDSTDTIWVSAFDEVGQKILGVKGDVFRYADEDTEHGTETKKK 547
Query: 304 LF-----TQYIFRLRAKLEH 318
L +Y F L K E
Sbjct: 548 LLMAAQNKEYRFLLLTKQER 567
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 99/407 (24%), Positives = 171/407 (42%), Gaps = 75/407 (18%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNRF 503
I +L P TIK R+T K ++ + +G KLFSID++D+ G E + FN+ ++
Sbjct: 168 IRNLQPNGQPQTIKVRITKKGDLKSFKEKQG--KLFSIDVIDKFGDECSISFFNEIAEQY 225
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+ + +V + ++K N D+ ++ + ++ C ED ++P +K
Sbjct: 226 DGLFKVGQVIVLKQFSVK-VNNNHQYNKGDHTVTVNKESKILICQED--PSIPMIKLNRQ 282
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
++ + + ID++ V E+ ++ K + + KRDI D+S +TLWG+
Sbjct: 283 FIQDMQNKQKGDLIDLIVVVKADTEVKTMILKKDNQQQSKRDIISFDESLIETEITLWGE 342
Query: 624 EAETFDASNKPVIAVKAARVSEFQ---------GNLLLMREIQDQQL--GMGD-KADYCS 671
A+ +DA +I K A++ EF+ G + M D+QL + D K Y S
Sbjct: 343 TAKDYDAKQGDIIVFKDAKIGEFKDKKQINIGYGTQIFMNP--DEQLFPQIHDVKKWYLS 400
Query: 672 VR----GIIQVFRGSNTTYKACPSQDCNKKVIDQN------------------------- 702
+ IQ +G++T + S + + ++ +
Sbjct: 401 LNSDQLSTIQKAQGNDTGPREVTSFESSLNILKEEIKNLQTDPEMKIWKEIRGQIMYIKD 460
Query: 703 -----NGMYRCEK-------------CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEA 744
N + C+K CNK+FN R IL + I D T+++WV+ F
Sbjct: 461 TPLYYNACFSCKKKIARNNEVWTCINCNKDFNEPDSRYILSLNISDSTDTIWVSAFDEVG 520
Query: 745 ESILGVTA---QEVGESTEDHPALKKALF-----TQYIFRLRAKLEH 783
+ ILGV + E TE KK L +Y F L K E
Sbjct: 521 QKILGVKGDVFRYADEDTEHGTETKKKLLMAAQNKEYRFLLLTKQER 567
>gi|146163802|ref|XP_001012333.2| hypothetical protein TTHERM_00106890 [Tetrahymena thermophila]
gi|146145960|gb|EAR92088.2| hypothetical protein TTHERM_00106890 [Tetrahymena thermophila
SB210]
Length = 671
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 150/320 (46%), Gaps = 23/320 (7%)
Query: 16 DYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSV 75
D+ ++ + ++ C ED ++P +K ++ + + ID++ V E+ ++
Sbjct: 316 DHTVTVNKESKILICQED--PSIPMIKLNRQFIQDMQNKQKGDLIDLIVVVKADTEVKTM 373
Query: 76 TGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTL 135
K + + KRDI D+S +TLWG+ A+ +DA +I K A++ EF+ K +
Sbjct: 374 ILKKDNQQQSKRDIISFDESLIETEITLWGETAKDYDAKQGDIIVFKDAKIGEFKDKKQI 433
Query: 136 SLSMSSVLSLNPD---IPECHKLQGWFSTQTNTRFEPVSQRTGGMGGG------AAGNLL 186
++ + + +NPD P+ H ++ W+ + + + + + G G + +
Sbjct: 434 NIGYGTQIFMNPDEQLFPQIHDVKKWYLSLNSDQLSTIQKAQGNDTGPREVTSFESSLNI 493
Query: 187 LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKC 246
L EI++ Q K + +RG I + + Y AC S C KK I +NN ++ C C
Sbjct: 494 LKEEIKNLQTDPEMKI-WKEIRGQIMYIKDTPLYYNACFS--CKKK-IARNNEVWTCINC 549
Query: 247 NKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA---QEVGESTEDHPALKKA 303
NK+FN R IL + I D T+++WV+ F + ILGV + E TE KK
Sbjct: 550 NKDFNEPDSRYILSLNISDSTDTIWVSAFDEVGQKILGVKGDVFRYADEDTEHGTETKKK 609
Query: 304 LF-----TQYIFRLRAKLEH 318
L +Y F L K E
Sbjct: 610 LLMAAQNKEYRFLLLTKQER 629
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 99/407 (24%), Positives = 171/407 (42%), Gaps = 75/407 (18%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNRF 503
I +L P TIK R+T K ++ + +G KLFSID++D+ G E + FN+ ++
Sbjct: 230 IRNLQPNGQPQTIKVRITKKGDLKSFKEKQG--KLFSIDVIDKFGDECSISFFNEIAEQY 287
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+ + +V + ++K N D+ ++ + ++ C ED ++P +K
Sbjct: 288 DGLFKVGQVIVLKQFSVK-VNNNHQYNKGDHTVTVNKESKILICQED--PSIPMIKLNRQ 344
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
++ + + ID++ V E+ ++ K + + KRDI D+S +TLWG+
Sbjct: 345 FIQDMQNKQKGDLIDLIVVVKADTEVKTMILKKDNQQQSKRDIISFDESLIETEITLWGE 404
Query: 624 EAETFDASNKPVIAVKAARVSEFQ---------GNLLLMREIQDQQL--GMGD-KADYCS 671
A+ +DA +I K A++ EF+ G + M D+QL + D K Y S
Sbjct: 405 TAKDYDAKQGDIIVFKDAKIGEFKDKKQINIGYGTQIFMNP--DEQLFPQIHDVKKWYLS 462
Query: 672 VR----GIIQVFRGSNTTYKACPSQDCNKKVIDQN------------------------- 702
+ IQ +G++T + S + + ++ +
Sbjct: 463 LNSDQLSTIQKAQGNDTGPREVTSFESSLNILKEEIKNLQTDPEMKIWKEIRGQIMYIKD 522
Query: 703 -----NGMYRCEK-------------CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEA 744
N + C+K CNK+FN R IL + I D T+++WV+ F
Sbjct: 523 TPLYYNACFSCKKKIARNNEVWTCINCNKDFNEPDSRYILSLNISDSTDTIWVSAFDEVG 582
Query: 745 ESILGVTA---QEVGESTEDHPALKKALF-----TQYIFRLRAKLEH 783
+ ILGV + E TE KK L +Y F L K E
Sbjct: 583 QKILGVKGDVFRYADEDTEHGTETKKKLLMAAQNKEYRFLLLTKQER 629
>gi|195572615|ref|XP_002104291.1| GD20884 [Drosophila simulans]
gi|194200218|gb|EDX13794.1| GD20884 [Drosophila simulans]
Length = 268
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 105/206 (50%), Gaps = 10/206 (4%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI SL+P +IKARV K+ I +W+ +G ++ + LLDESGEI +F D N F
Sbjct: 42 PICSLTPGIYSSSIKARVIWKSEITQWSTGTKTGIVYIMHLLDESGEITGIVFADYDNGF 101
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+D I+ VY+IS ++ A + +N Y++ F +T + G +P KY F+
Sbjct: 102 YDQIQPGLVYHISGFEVEKAISSYKVSDNPYQLFFRPNTVL---QLSACGQIPREKYNFL 158
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
PL ++ + ++ +D +G+C + L G Y R+I LVD V + LW K
Sbjct: 159 PLLKVSSKADEDPVDAIGICTEVGRLEERGG------YFIREILLVDPDNHPVMLNLWQK 212
Query: 624 EAETFDASNKPVIAVKAARVSEFQGN 649
EA F VI VK AR + F N
Sbjct: 213 EAVNFVGQPTDVIVVKGAR-ARFHNN 237
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 9/149 (6%)
Query: 14 NNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELS 73
+N Y++ F +T + G +P KY F+PL ++ + ++ +D +G+C + L
Sbjct: 129 DNPYQLFFRPNTVL---QLSACGQIPREKYNFLPLLKVSSKADEDPVDAIGICTEVGRLE 185
Query: 74 SVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGK 133
G Y R+I LVD V + LW KEA F VI VK AR
Sbjct: 186 ERGG------YFIREILLVDPDNHPVMLNLWQKEAVNFVGQPTDVIVVKGARARFHNNEM 239
Query: 134 TLSLSMSSVLSLNPDIPECHKLQGWFSTQ 162
L+ S + + +NPDIP+ L W++ Q
Sbjct: 240 KLNASWYTNVQINPDIPDATDLLAWYNNQ 268
>gi|88191850|pdb|1YNX|A Chain A, Solution Structure Of Dna Binding Domain A (Dbd-A) Of
S.Cerevisiae Replication Protein A (Rpa)
Length = 114
Score = 115 bits (288), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 76/109 (69%), Gaps = 3/109 (2%)
Query: 442 THPIVS---LSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFND 498
T PI + LSPYQN WTIKARV+ K I+ W+N RG GKLF+++ LD SGEIRAT FND
Sbjct: 1 TRPIFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEIRATAFND 60
Query: 499 ECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPC 547
+F++++++ KVYY+S L+PA +F+++ + YE++ T + C
Sbjct: 61 FATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEEC 109
>gi|401406884|ref|XP_003882891.1| Replication protein A, 70 kDa DNA-binding subunit, related
[Neospora caninum Liverpool]
gi|325117307|emb|CBZ52859.1| Replication protein A, 70 kDa DNA-binding subunit, related
[Neospora caninum Liverpool]
Length = 621
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 129/259 (49%), Gaps = 38/259 (14%)
Query: 420 NGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
G V A+ RQ +V I L+ Y W I+ RV +KT +R + N RG ++
Sbjct: 182 RGRFHVQTGGAVARQKRGILVN---IKDLNSYSQDWMIRGRVADKTDLRLFANPRGESQV 238
Query: 480 FSIDLLD-----------------ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKP 522
F+ ++D + GEIR + F +H +E +VY S T+
Sbjct: 239 FAATIIDHLFEVVLGRCYVSPFVCKKGEIRGSFFGGVAAAWHPRLEVGRVYQFSRGTIDT 298
Query: 523 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV-KYCFVPLKTIAEISPDEN----- 576
ANKK++S++++YE+ F ++ ++D PS+ F P+K +A ++ DE+
Sbjct: 299 ANKKYNSLSHEYEIKFDDRAVIVEVDDD-----PSIPAQIFSPVK-LATLTTDESLLGSV 352
Query: 577 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS---NK 633
+DV+G SV + + ++++T+VD S A+VT+TLW + A S +
Sbjct: 353 VDVIGFVTSFCATHSVLAR---EEVQRKEMTVVDDSSAAVTVTLWEQHATALKDSVLAER 409
Query: 634 PVIAVKAARVSEFQGNLLL 652
P++A+KA RVSE+ G + L
Sbjct: 410 PLVAIKALRVSEYAGKVSL 428
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 95/167 (56%), Gaps = 19/167 (11%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV-KYCFVPLKTIAEISPDEN----- 59
ANKK++S++++YE+ F ++ ++D PS+ F P+K +A ++ DE+
Sbjct: 299 ANKKYNSLSHEYEIKFDDRAVIVEVDDD-----PSIPAQIFSPVK-LATLTTDESLLGSV 352
Query: 60 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS---NK 116
+DV+G SV + + ++++T+VD S A+VT+TLW + A S +
Sbjct: 353 VDVIGFVTSFCATHSVLAR---EEVQRKEMTVVDDSSAAVTVTLWEQHATALKDSVLAER 409
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPD-IPECHKLQGWFSTQ 162
P++A+KA RVSE+ G +L+ + SVL ++P + + +L+ W+ +
Sbjct: 410 PLVAIKALRVSEYAGKVSLTSTSRSVLLVDPHGLEDADRLEAWWEAE 456
>gi|159480170|ref|XP_001698157.1| replication protein A, 70 kDa DNA-binding subunit [Chlamydomonas
reinhardtii]
gi|158273655|gb|EDO99442.1| replication protein A, 70 kDa DNA-binding subunit [Chlamydomonas
reinhardtii]
Length = 647
Score = 112 bits (280), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 93/392 (23%), Positives = 169/392 (43%), Gaps = 57/392 (14%)
Query: 305 FTQYIFRLRAKLEHYNGTKK---IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRY 361
F + ++L+ G K + DG N + +LA+Q D++ G LS +++I +
Sbjct: 21 FANGVVLRVSELQEVGGKKHKCMLSDGNN-SIRGVLASQFADLVASGELSNGCLIKITAF 79
Query: 362 IVSGVSSGSATNRSVLIILELNIIKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNG 421
+ + + S V++ +L+++ PGT I K+ LN P A ++
Sbjct: 80 VTNTIGSDD-----VVLATDLSVVSPGTGI-VKMEVDNALNARNSTPEAAGKPQAKSSTA 133
Query: 422 SNGVHNNVA---------IPRQASAPV-------------VQT----------------H 443
N P +PV ++T H
Sbjct: 134 DPDAKENSTPGPDFKSSKTPGPGLSPVSFFSPAPTPTGAGIKTAPTPPSTMGVSDRKNHH 193
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNR 502
I L PY+ W I+A+V K P+R ++ K+ ++DL+DE+G I+ T + R
Sbjct: 194 KIAQLHPYETNWCIRAKVDRKAPLRALP-SKPDVKVMTVDLVDETGTAIQGTFWRGPAER 252
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
+ + + KVY +KPA+KK+ ++ N+Y++ FT +T V + + M +
Sbjct: 253 MSEQLVEGKVYVFHKFKVKPADKKYVTVKNEYQIDFTDTTDVSEAADQDSSAM-TTAVEV 311
Query: 563 VPLKTIA-EISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
P++ + I +DV+GV + +V K + +R++T+ DQS SV +TLW
Sbjct: 312 TPIEQLPRRIGQRAPVDVMGVVLALGSYGTVKRKADNSELPRREVTIGDQSGKSVAITLW 371
Query: 622 GKEAETF-----DASNKPVIAVKAARVSEFQG 648
G + T + V+ V RV+++ G
Sbjct: 372 GDMSSTTAQQLEGMEGRAVLQVTGCRVTDYNG 403
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 153/352 (43%), Gaps = 35/352 (9%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE-ISPDENIDVL 63
PA+KK+ ++ N+Y++ FT +T V + + M + P++ + I +DV+
Sbjct: 272 PADKKYVTVKNEYQIDFTDTTDVSEAADQDSSAM-TTAVEVTPIEQLPRRIGQRAPVDVM 330
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF-----DASNKPV 118
GV + +V K + +R++T+ DQS SV +TLWG + T + V
Sbjct: 331 GVVLALGSYGTVKRKADNSELPRREVTIGDQSGKSVAITLWGDMSSTTAQQLEGMEGRAV 390
Query: 119 IAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ--TNTRFEPVSQ---- 172
+ V RV+++ G +LS SV S+NP+ P ++ W+ T RF V
Sbjct: 391 LQVTGCRVTDYNGCSLSTLS-KSVASINPETPAAQQMMLWYKTSEMNPDRFTAVGADLVM 449
Query: 173 -RTGGMGGGAAGNLLLMRE-----------IQDQQLGMGDKADYCSVRGIIQVFRG--SN 218
R G + RE + + DKA + +V + + N
Sbjct: 450 ARGSQGGSQGGAGGVPARERYFSLKDVSGLTAETEALANDKAIFQNVTACVAMINNDDKN 509
Query: 219 TTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNE 278
Y A P + +KV+DQ G + E +K +R +L V + D T V LF E
Sbjct: 510 IFYLANP--ENGRKVVDQGGGRFWSEADSKVVEKPEHRYLLSVRLADHTGETNVQLFGKE 567
Query: 279 AESILGVTAQEVGESTED-----HPALKKALFTQYIFRLRAKLEHYNGTKKI 325
AE+++G+ A E+ E ALK A + + + +K YNG + +
Sbjct: 568 AEAVMGMRADELAALKEAGGEGFAGALKAAQWKPWQVVVMSKAREYNGNRSV 619
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 665 DKADYCSVRGIIQVFRG--SNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRL 722
DKA + +V + + N Y A P + +KV+DQ G + E +K +R
Sbjct: 489 DKAIFQNVTACVAMINNDDKNIFYLANP--ENGRKVVDQGGGRFWSEADSKVVEKPEHRY 546
Query: 723 ILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED-----HPALKKALFTQYIFRL 777
+L V + D T V LF EAE+++G+ A E+ E ALK A + + +
Sbjct: 547 LLSVRLADHTGETNVQLFGKEAEAVMGMRADELAALKEAGGEGFAGALKAAQWKPWQVVV 606
Query: 778 RAKLEHYN 785
+K YN
Sbjct: 607 MSKAREYN 614
>gi|194904084|ref|XP_001980998.1| GG17468 [Drosophila erecta]
gi|190652701|gb|EDV49956.1| GG17468 [Drosophila erecta]
Length = 228
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 102/200 (51%), Gaps = 10/200 (5%)
Query: 444 PIVSLSP-YQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNR 502
PI SL P N +IKARVT K+ I +WNNA G +F ++LLDESGEI +FN+ N
Sbjct: 1 PICSLLPTLCNMTSIKARVTWKSEITQWNNAGKDGIIFIMNLLDESGEITGVVFNNLINA 60
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F+ I+ VY S ++ A F N + + F TV+ + E +P Y F
Sbjct: 61 FYGQIQTGLVYIFSRFQVQQAENCFKVSKNPFAV-FLLWNTVVELSASE--RIPRETYNF 117
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
+PL ++ E +D +G+C + +L G + R+I LVD V + LW
Sbjct: 118 LPLSEVSTKPDKEPVDAIGICTEVRDLDHRGGHS------IREILLVDPDYQPVMLNLWE 171
Query: 623 KEAETFDASNKPVIAVKAAR 642
KEAE F+ VI VK AR
Sbjct: 172 KEAENFEGRPDDVIVVKGAR 191
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 38 MPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA 97
+P Y F+PL ++ E +D +G+C + +L G + R+I LVD
Sbjct: 110 IPRETYNFLPLSEVSTKPDKEPVDAIGICTEVRDLDHRGGHS------IREILLVDPDYQ 163
Query: 98 SVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQG 157
V + LW KEAE F+ VI VK AR L+ S + + +NPDIP+ +
Sbjct: 164 PVMLNLWEKEAENFEGRPDDVIVVKGARAQPHNNAIKLNASWYTNVQINPDIPDATSMLE 223
Query: 158 WFSTQ 162
W+ Q
Sbjct: 224 WYRNQ 228
>gi|328705572|ref|XP_003242847.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Acyrthosiphon pisum]
Length = 386
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 162/329 (49%), Gaps = 29/329 (8%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRY-IVSGVSSGSATNRSVLIILELN 383
+ DG+++NS+ L +QLND+I + TI++I Y + G +S + R +++I ++
Sbjct: 45 LSDGIHMNSYFFLCSQLNDLIIKKQVKYATILRIDEYKFMDGENSNDHSPRWIILIQKVT 104
Query: 384 IIKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTH 443
I+ GNPQPL N ++ P N N + ++
Sbjct: 105 ILIHRN----VYGNPQPL----INIEKKKMPL-INLNVNKTPSRIFYCIEHLENNLMSVK 155
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
+++LS + +K V K I N S ++ +++++D +G +R + FN +
Sbjct: 156 DLITLSNGSCPFVLKLTVVKKYAI----NTYSSCRVLNVNMMDSTGVVRVSAFNTLSDSL 211
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSF-THSTTVIPCNEDEVGNMPSVKYCF 562
+++ E++K YY+++ LK +N + + S +VI + D++ P ++Y
Sbjct: 212 NEIFEENKTYYLADTILK---------HNQFGVELKLQSHSVIIESIDKI--QPKIQYIK 260
Query: 563 VP-LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
+ E +P+ D++GVCI+ ++ + + T++ KR+I L+D S A++T+ +W
Sbjct: 261 TSNFNKLLENNPNTFCDLIGVCIEIGDIEACSNSTSRTEIGKREIVLIDMSMATITLKVW 320
Query: 622 GKEAETFDAS--NKPVIAVKAARVSEFQG 648
G + FD N P++ VK A + +F G
Sbjct: 321 GDQVNKFDEKFDNPPIVMVKQAVLKQFNG 349
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 68/111 (61%), Gaps = 2/111 (1%)
Query: 51 IAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET 110
+ E +P+ D++GVCI+ ++ + + T++ KR+I L+D S A++T+ +WG +
Sbjct: 267 LLENNPNTFCDLIGVCIEIGDIEACSNSTSRTEIGKREIVLIDMSMATITLKVWGDQVNK 326
Query: 111 FDAS--NKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF 159
FD N P++ VK A + +F G K S+ SVL +NP++ E H+L+ W+
Sbjct: 327 FDEKFDNPPIVMVKQAVLKQFNGAKYFSMVKFSVLFINPNLAEVHQLKEWY 377
>gi|238585702|ref|XP_002390945.1| hypothetical protein MPER_09698 [Moniliophthora perniciosa FA553]
gi|215454988|gb|EEB91875.1| hypothetical protein MPER_09698 [Moniliophthora perniciosa FA553]
Length = 175
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 94/173 (54%), Gaps = 12/173 (6%)
Query: 394 KIGNPQPLNTN----TDNSSTQQTPAATNTNGS---NGVHNNVAIPRQASAPVVQTHPIV 446
KIG+P + N T +S TPA GS H VA R S PV PI
Sbjct: 8 KIGDPTTIMKNGKRRTKPASATTTPAVVRAEGSTTGQQQHYRVAQGRSNSRPV---DPIQ 64
Query: 447 SLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDM 506
+L+PYQN WTIKARVT K+ ++ +N G GK F + L+DESGEIR T FN + +
Sbjct: 65 TLNPYQNNWTIKARVTRKSDMKARSNQYGVGKSFYVTLMDESGEIRGTAFNAVADDLYGR 124
Query: 507 IEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK 559
+++ K YYIS + A+ K S +++DYE+ +T + C + N+P VK
Sbjct: 125 LDEGKAYYISKAEVILASDKVSDVSSDYELWLERNTEIEECL--DTSNLPMVK 175
>gi|194764877|ref|XP_001964554.1| GF19997 [Drosophila ananassae]
gi|190614826|gb|EDV30350.1| GF19997 [Drosophila ananassae]
Length = 265
Score = 110 bits (276), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 110/214 (51%), Gaps = 12/214 (5%)
Query: 437 APVVQTHPIVSLS-PYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATM 495
+P + I LS P+ + I ARV +KT I + N SG +F I L DESGEI AT+
Sbjct: 21 SPFQKRKLICDLSHPWDSTSFIIARVVHKTEITSYEN-ETSGNIFLIYLRDESGEIIATV 79
Query: 496 FNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNE--DEVG 553
N+ CN F IE D+V + ++ + A KK+ + + + ++FT ST V+P +
Sbjct: 80 HNELCNTFFKQIETDQVCFFADFEVNWATKKYVLMPHSFNINFTQSTKVLPIGSLNQNIT 139
Query: 554 NMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS- 612
+P ++Y P++ I ++ E +D +G+C EL+ G Y R+I L+D
Sbjct: 140 AIPGIRYNLQPIEVIHKMCDGEPVDTIGICGKVDELAKRGG------YYIREIELMDYDD 193
Query: 613 -QASVTMTLWGKEAETFDASNKPVIAVKAARVSE 645
+T+ LW A FD +I VK ARV E
Sbjct: 194 YDGVITLNLWNDAAINFDGKEDDIILVKGARVRE 227
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 10/158 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNE--DEVGNMPSVKYCFVPLKTIAEISPDENIDVL 63
A KK+ + + + ++FT ST V+P + +P ++Y P++ I ++ E +D +
Sbjct: 107 ATKKYVLMPHSFNINFTQSTKVLPIGSLNQNITAIPGIRYNLQPIEVIHKMCDGEPVDTI 166
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ--ASVTMTLWGKEAETFDASNKPVIAV 121
G+C EL+ G Y R+I L+D +T+ LW A FD +I V
Sbjct: 167 GICGKVDELAKRGG------YYIREIELMDYDDYDGVITLNLWNDAAINFDGKEDDIILV 220
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF 159
K ARV E ++ S + +NP+I E L+ W
Sbjct: 221 KGARVREHNLKNKINFDWFSKMEINPNIKEAKSLREWL 258
>gi|209880341|ref|XP_002141610.1| OB-fold nucleic acid binding domain-containing protein
[Cryptosporidium muris RN66]
gi|209557216|gb|EEA07261.1| OB-fold nucleic acid binding domain-containing protein
[Cryptosporidium muris RN66]
Length = 475
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/350 (26%), Positives = 167/350 (47%), Gaps = 38/350 (10%)
Query: 3 AAPANKKFSSINNDYEMSFTHSTTVIPCNEDE-VGNMPSVKYCFVPLKTIAEISPDENID 61
A +N +F++ +N YE++F+ + DE + P +Y F+ +K I ++ +D
Sbjct: 79 VAVSNARFNNTSNPYEINFSERCKITKVEHDETISKDP--QYRFLSIKDIRNMNTPCTVD 136
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA--SNKPVI 119
++G+ ++ LS V + N + +R+I +VD S+ + +TLWG A D SN PV+
Sbjct: 137 IIGIIKSSSPLSKVISRRNNEEIPRRNIVIVDDSEYQLNVTLWGDLASIDDEILSNNPVV 196
Query: 120 AVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMG 178
A K ++ +FQG + +L+ S++ N +K++ WF T+F+ ++
Sbjct: 197 AFKNLQIRDFQGKQGSTLNGRSMIDFNLKNDRMNKVKSWFIEYGQTTKFQSINTTVIQSS 256
Query: 179 GGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFR----------GSNT-------TY 221
L L + +++ ++ M D+ Y S + + R G N TY
Sbjct: 257 NFPMDKLTLEKSLKEVRILM-DENSYSSNQTYSVLARISRIGFPNSIGQNISEKKPSLTY 315
Query: 222 KACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAES 281
ACP C KKV+ N Y CEKC++ T + + PV I D+T+S+ V F N
Sbjct: 316 DACPK--CKKKVL---NNSY-CEKCDESVIADT-KYMFPVTIEDYTSSLSVRCFHNIGSI 368
Query: 282 IL-GVTAQEVGE-STEDHPALKKALFTQYIF-----RLRAKLEHYNGTKK 324
+L G+ + E + + L L +Y++ R+ ++E YN KK
Sbjct: 369 VLSGLESSECKQMELRNDVKLNFLLGFKYLWQYLNLRITLRMEEYNNQKK 418
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 113/212 (53%), Gaps = 12/212 (5%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNR 502
PI ++ + T+K RV K+ R R K F IDL+D+ G+ I+ + ++
Sbjct: 2 PIREVNVNRQIITLKGRVIEKS--RTLQTLRNDLKFFHIDLIDKDGDTIKVKFWRNKAEE 59
Query: 503 FHDMIEKDKVYYISNCT---LKPANKKFSSINNDYEMSFTHSTTVIPCNEDE-VGNMPSV 558
+++ IE+ VY I CT + +N +F++ +N YE++F+ + DE + P
Sbjct: 60 YYNKIEQGDVY-IFKCTGSDVAVSNARFNNTSNPYEINFSERCKITKVEHDETISKDP-- 116
Query: 559 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM 618
+Y F+ +K I ++ +D++G+ ++ LS V + N + +R+I +VD S+ + +
Sbjct: 117 QYRFLSIKDIRNMNTPCTVDIIGIIKSSSPLSKVISRRNNEEIPRRNIVIVDDSEYQLNV 176
Query: 619 TLWGKEAETFDA--SNKPVIAVKAARVSEFQG 648
TLWG A D SN PV+A K ++ +FQG
Sbjct: 177 TLWGDLASIDDEILSNNPVVAFKNLQIRDFQG 208
>gi|393910678|gb|EJD75993.1| replication factor a 1 [Loa loa]
Length = 580
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 102/387 (26%), Positives = 166/387 (42%), Gaps = 79/387 (20%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNR 502
PI L+PY W + +VT+ IR RG +FS +D+ G EIR + F D R
Sbjct: 171 PIKLLTPYCKNWRLCIKVTSVDEIR---CIRGQ-HIFSFLAVDDGGVEIRVSAFGDIACR 226
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
+I +++YYI+ ++K AN+++S +D E+ + V C + P V + F
Sbjct: 227 TATLICPEQMYYITRASVKMANRRYSRNEHDMEVVLRPDSEVTKCTDRPYILSPKVNFEF 286
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
V + + ID T + KR+I +VD S V + LWG
Sbjct: 287 VRIHNLQNF-----ID-----------------TEIEELQKREIQVVDDSGYYVAINLWG 324
Query: 623 KEAETF-DASNKPVIAVKAARVSEFQGNLLLM-----REIQD------------------ 658
++A+ F + + V+AVK V FQG + L+ + + D
Sbjct: 325 QKAKMFPNEQYQHVLAVKRLLVRCFQGTISLVSLASSKLLHDPHFPEADALRFWYSENRK 384
Query: 659 -------------------QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKK-V 698
+QL + ++ +I N YK CP+ C KK +
Sbjct: 385 SFKPASMNQVSSFHEHKWIKQLKPSLDGHFFNLTAMISSIFTENAVYKGCPT--CKKKLL 442
Query: 699 IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG-- 756
++++N +Y C KC N + Y L + + D+T +V VT F + A+ ++G A EV
Sbjct: 443 VEKDNDLYICSKCGI-CNEYKYYYTLHMELFDFTGTVHVTAFDDCAQKLIGEQADEVAKF 501
Query: 757 ---ESTEDHPALKKALFTQYIFRLRAK 780
+S + K LF Y+FRL A+
Sbjct: 502 LKFDSERYQSSFKSVLFKPYMFRLGAQ 528
Score = 99.8 bits (247), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 140/317 (44%), Gaps = 42/317 (13%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN+++S +D E+ + V C + P V + FV + +
Sbjct: 247 ANRRYSRNEHDMEVVLRPDSEVTKCTDRPYILSPKVNFEFVRIHNLQNF----------- 295
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF-DASNKPVIAVKAA 124
ID T + KR+I +VD S V + LWG++A+ F + + V+AVK
Sbjct: 296 -ID----------TEIEELQKREIQVVDDSGYYVAINLWGQKAKMFPNEQYQHVLAVKRL 344
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGN 184
V FQG +L SS L +P PE L+ W+S + F+P S +
Sbjct: 345 LVRCFQGTISLVSLASSKLLHDPHFPEADALRFWYS-ENRKSFKPASM-------NQVSS 396
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKK-VIDQNNGMYRC 243
+ I +QL + ++ +I N YK CP+ C KK +++++N +Y C
Sbjct: 397 FHEHKWI--KQLKPSLDGHFFNLTAMISSIFTENAVYKGCPT--CKKKLLVEKDNDLYIC 452
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG-----ESTEDHP 298
KC N + Y L + + D+T +V VT F + A+ ++G A EV +S
Sbjct: 453 SKCGI-CNEYKYYYTLHMELFDFTGTVHVTAFDDCAQKLIGEQADEVAKFLKFDSERYQS 511
Query: 299 ALKKALFTQYIFRLRAK 315
+ K LF Y+FRL A+
Sbjct: 512 SFKSVLFKPYMFRLGAQ 528
>gi|170591825|ref|XP_001900670.1| BRCA2 repeat family protein [Brugia malayi]
gi|158591822|gb|EDP30425.1| BRCA2 repeat family protein [Brugia malayi]
Length = 387
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 147/337 (43%), Gaps = 40/337 (11%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDE------- 58
ANK++S +D E+ + V C + P V + FV + + E
Sbjct: 12 ANKRYSRNQHDMEVVLRPDSEVTKCTDRPQILSPKVNFEFVRIHNLQSFIDTEIESFGAC 71
Query: 59 -----------NI--DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 105
NI DVLG I E+ + KT + KR+I +VD S VT+ LWG
Sbjct: 72 EGFLMNKERLNNITEDVLGTVIHIGEMKQLKSKTGEDL-QKREIQIVDDSGYYVTVNLWG 130
Query: 106 KEAETFDASN-KPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTN 164
++A+ F + + V+AVK V FQG +L S+ L +P PE LQ W+S +
Sbjct: 131 QKAKIFPSEQYQHVLAVKGLLVRCFQGTISLVSMTSTKLLHDPHFPEADALQFWYSKNKD 190
Query: 165 TRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKAC 224
F+ S + R I +QL + ++ +I N YK C
Sbjct: 191 KAFKSASV-------NQVSSFKEHRWI--KQLKFSVDGHFFNLTAMISSIFIENAVYKGC 241
Query: 225 PSQDCNKKVIDQNNG-MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL 283
+ C KK++ + +G +Y C KC N + Y L + + D+T +V VT F + A+ ++
Sbjct: 242 LT--CKKKLLVEKDGDLYICSKCGI-CNEYKYYYTLHMELFDFTGTVHVTAFDDCAQKLI 298
Query: 284 GVTAQEVG-----ESTEDHPALKKALFTQYIFRLRAK 315
G A EV + + K LF Y+FRL A+
Sbjct: 299 GEQADEVAKLLIFDRDRYQSSFKSVLFKPYMFRLGAQ 335
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 141/339 (41%), Gaps = 74/339 (21%)
Query: 512 VYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI 571
+YYI++ ++K ANK++S +D E+ + V C + P V + FV + +
Sbjct: 1 MYYITHASVKMANKRYSRNQHDMEVVLRPDSEVTKCTDRPQILSPKVNFEFVRIHNLQSF 60
Query: 572 SPDE------------------NI--DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ 611
E NI DVLG I E+ + KT + KR+I +VD
Sbjct: 61 IDTEIESFGACEGFLMNKERLNNITEDVLGTVIHIGEMKQLKSKTGEDL-QKREIQIVDD 119
Query: 612 SQASVTMTLWGKEAETFDASN-KPVIAVKAARVSEFQGNLLLM-----REIQD------- 658
S VT+ LWG++A+ F + + V+AVK V FQG + L+ + + D
Sbjct: 120 SGYYVTVNLWGQKAKIFPSEQYQHVLAVKGLLVRCFQGTISLVSMTSTKLLHDPHFPEAD 179
Query: 659 -------------------------------QQLGMGDKADYCSVRGIIQVFRGSNTTYK 687
+QL + ++ +I N YK
Sbjct: 180 ALQFWYSKNKDKAFKSASVNQVSSFKEHRWIKQLKFSVDGHFFNLTAMISSIFIENAVYK 239
Query: 688 ACPSQDCNKKVIDQNNG-MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAES 746
C + C KK++ + +G +Y C KC N + Y L + + D+T +V VT F + A+
Sbjct: 240 GCLT--CKKKLLVEKDGDLYICSKCGI-CNEYKYYYTLHMELFDFTGTVHVTAFDDCAQK 296
Query: 747 ILGVTAQEVG-----ESTEDHPALKKALFTQYIFRLRAK 780
++G A EV + + K LF Y+FRL A+
Sbjct: 297 LIGEQADEVAKLLIFDRDRYQSSFKSVLFKPYMFRLGAQ 335
>gi|240848761|ref|NP_001155514.1| replication protein A 70 kDa DNA-binding subunit-like
[Acyrthosiphon pisum]
gi|239792426|dbj|BAH72558.1| ACYPI003269 [Acyrthosiphon pisum]
Length = 325
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 113/197 (57%), Gaps = 10/197 (5%)
Query: 455 WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYY 514
W+I ARV K+ + + RG+GK F+ L+D++ EIRA F D+C+R ++++ VY
Sbjct: 17 WSITARVLKKSNVLPYQKERGTGKYFTAILIDKTTEIRAKAFGDDCDRLFSQLQENNVYN 76
Query: 515 ISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI-SP 573
I N ++ A+KK++ NDYE+ F +T +I + V ++PS LKTI + S
Sbjct: 77 IKNGQIQLADKKYNKSKNDYEIIFNETTIIIQ--KFGVTDIPS----HPQLKTIENVFSM 130
Query: 574 DEN--IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS 631
D+N ID +GV I+ + + + TY R+I L D ++ SVT+TLW +A F+A+
Sbjct: 131 DQNTLIDTIGVIIEIEQSKEIKKNNSNDTYKLRNIILADCTR-SVTVTLWDIDATNFNAN 189
Query: 632 NKPVIAVKAARVSEFQG 648
++++ ++ ++
Sbjct: 190 EGDIMSIMGGKIINYKN 206
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 92/174 (52%), Gaps = 10/174 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI-SPDEN--IDV 62
A+KK++ NDYE+ F +T +I + V ++PS LKTI + S D+N ID
Sbjct: 85 ADKKYNKSKNDYEIIFNETTIIIQ--KFGVTDIPS----HPQLKTIENVFSMDQNTLIDT 138
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVK 122
+GV I+ + + + TY R+I L D ++ SVT+TLW +A F+A+ ++++
Sbjct: 139 IGVIIEIEQSKEIKKNNSNDTYKLRNIILADCTR-SVTVTLWDIDATNFNANEGDIMSIM 197
Query: 123 AARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGG 176
++ ++ +S++ SS + +NP E LQ W+ + +SQ + G
Sbjct: 198 GGKIINYKNVNKISVTGSSEIIINPYWNETFDLQIWYKEFEKKKLLNLSQVSIG 251
>gi|66804925|ref|XP_636195.1| hypothetical protein DDB_G0289513 [Dictyostelium discoideum AX4]
gi|60464550|gb|EAL62688.1| hypothetical protein DDB_G0289513 [Dictyostelium discoideum AX4]
Length = 679
Score = 109 bits (272), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 17/225 (7%)
Query: 440 VQTHPIV---SLSPYQN-KWTIKARVTNKTPIREWN-NARGSGKLFSIDLLDESGEIRAT 494
+ T PI S++P N ++TI+A V NK P++ WN A G GKLFS++L+D +GEI+
Sbjct: 206 LSTQPITDIESIAPGMNVQFTIRAMVRNKQPLKSWNKGANGEGKLFSMELVDSTGEIKCA 265
Query: 495 MFNDEC------NRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
F+D N +D E KVY+I +K ANK ++++++ E+S + V+ +
Sbjct: 266 CFSDSSNPNNFINALYDCFENGKVYFIQRFFVKSANKLYNTLSHQSELSINSESRVM-IS 324
Query: 549 EDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITL 608
D+ P Y F + I + ++ +DV+G + ++++T K K + K IT+
Sbjct: 325 PDQTQFTP--HYNFKKIADIENLEKNDTVDVIGAITNIDPIANLTSKQG-KEFTKFGITI 381
Query: 609 VDQSQASVTMTLWGKEAETFDASNK--PVIAVKAARVSEFQGNLL 651
D + AS+ + W ++A K +IA+K +VS+F G L
Sbjct: 382 ADDTNASINVVFWNEKATEVAPQVKVGDIIAMKGVKVSDFSGRTL 426
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 74/148 (50%), Gaps = 7/148 (4%)
Query: 1 MLAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI 60
ANK ++++++ E+S + V+ + D+ P Y F + I + ++ +
Sbjct: 295 FFVKSANKLYNTLSHQSELSINSESRVM-ISPDQTQFTP--HYNFKKIADIENLEKNDTV 351
Query: 61 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNK--PV 118
DV+G + ++++T K K + K IT+ D + AS+ + W ++A K +
Sbjct: 352 DVIGAITNIDPIANLTSKQG-KEFTKFGITIADDTNASINVVFWNEKATEVAPQVKVGDI 410
Query: 119 IAVKAARVSEFQGGKTLSLSMSSVLSLN 146
IA+K +VS+F G+TLS S S LN
Sbjct: 411 IAMKGVKVSDF-SGRTLSYSFGSSFGLN 437
>gi|196018182|ref|XP_002118759.1| hypothetical protein TRIADDRAFT_62772 [Trichoplax adhaerens]
gi|190578288|gb|EDV18754.1| hypothetical protein TRIADDRAFT_62772 [Trichoplax adhaerens]
Length = 218
Score = 109 bits (272), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 96/181 (53%), Gaps = 27/181 (14%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
DG++ S MLATQLN +T G L I+++ Y + V R VL+IL+L ++
Sbjct: 46 DGIHAYSSVMLATQLNQRVTSGELDAKAIIKLNNYTCNIVQE----TRKVLVILDLTVLT 101
Query: 387 PGTEIGFKIGNPQPLNTNTDNSSTQQ----------TPAATNTNGSNGVHNNVAIPRQAS 436
G+E IG P+P N + S + P+ TN S N V PR
Sbjct: 102 CGSETDI-IGQPKPYNDQSAPSKSNNYQPQQEIQQQKPSYAPTNRS---MNQVTNPRPTI 157
Query: 437 APVVQ---------THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDE 487
P PI SL+PYQN+WTI+ RVT+K+ IR+W+N+RG GKLFS+DL+DE
Sbjct: 158 HPQQNLVDKSENRIVFPISSLTPYQNRWTIRTRVTSKSEIRKWSNSRGEGKLFSVDLIDE 217
Query: 488 S 488
S
Sbjct: 218 S 218
>gi|440803406|gb|ELR24309.1| replication protein A1, putative, partial [Acanthamoeba castellanii
str. Neff]
Length = 1326
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 114/215 (53%), Gaps = 15/215 (6%)
Query: 444 PIVSLSPYQNKWTIKARVTN-KTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECN 501
P+ +L+P+ WTI+ RV T + +W G+ F DL+D++G+ IRA +N +
Sbjct: 998 PVSALNPFSVAWTIEVRVVYLPTELFKWQKNGKEGRHFCCDLMDKNGDCIRAVAYNAVAD 1057
Query: 502 RFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSVKY 560
++++++Y IS K ANKK+S +++DY+++F +T +IP + + P+ +
Sbjct: 1058 DIFPRLKENQIYRISGGHFKVANKKYSKLSHDYDLTFATTTLIIPITDPTRIAAFPTQQP 1117
Query: 561 CFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTL 620
F+PL +A DE + L S+T +T KR + L DQ+++ V +TL
Sbjct: 1118 DFLPLSQLASREHDE--------VAVGPLGSITARTTGNVIPKRSVFLEDQTRSIVELTL 1169
Query: 621 W---GKEAETFDASNKPVIAVKAARVSEFQGNLLL 652
W K A T N V+AV A V+ F+G+ L
Sbjct: 1170 WYDDAKNAATL-FKNGDVLAVTGAWVNRFRGHTTL 1203
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 15/163 (9%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
ANKK+S +++DY+++F +T +IP + + P+ + F+PL +A DE
Sbjct: 1079 ANKKYSKLSHDYDLTFATTTLIIPITDPTRIAAFPTQQPDFLPLSQLASREHDE------ 1132
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW---GKEAETFDASNKPVIAV 121
+ L S+T +T KR + L DQ+++ V +TLW K A T N V+AV
Sbjct: 1133 --VAVGPLGSITARTTGNVIPKRSVFLEDQTRSIVELTLWYDDAKNAATL-FKNGDVLAV 1189
Query: 122 KAARVSEFQGGKTLSLSMSSV-LSLNPD-IPECHKLQGWFSTQ 162
A V+ F+G TLS +S L +N P+ L W Q
Sbjct: 1190 TGAWVNRFRGHTTLSTKHASYKLHVNSSAFPQTAALVQWRRDQ 1232
>gi|401405941|ref|XP_003882420.1| replication factor-A C terminal domain-containing protein [Neospora
caninum Liverpool]
gi|325116835|emb|CBZ52388.1| replication factor-A C terminal domain-containing protein [Neospora
caninum Liverpool]
Length = 515
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 94/361 (26%), Positives = 171/361 (47%), Gaps = 46/361 (12%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPC-NEDEVGNMPSVKYCFVPLKTIAEISPDENI--DV 62
ANK+F+++ + YE+ F + ++ +E ++ +K + L+ IAE + DV
Sbjct: 93 ANKRFNTVGHQYELVFYRDSEIVEVPDEGDISTARKLK-ALMSLRDIAESKREVPFFADV 151
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKP-VIAV 121
L V +++ ++SV K + + +R++ +VD+SQ + ++LWG + + + + P V+A
Sbjct: 152 LVVVVESQPITSVVSKKTGEEFKRRNVKVVDRSQYEMEISLWGNQVDALEGVSLPRVVAF 211
Query: 122 KAARVSEFQGGKTLSLS-----MSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTG 175
+V E+QGG+ S ++S+ + + L W+ + T RF +S R+G
Sbjct: 212 TGLQVREWQGGRQASTGKGSEILTSLQAFAGAEKDSQSLLQWYKENSGTIRFASMS-RSG 270
Query: 176 GMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQV------------------FRGS 217
GAAG+ L R ++++ + + + I Q+ GS
Sbjct: 271 PGDLGAAGS-LEKRRVEEKCIDEIKQKTDGAFSFIGQIRRVYWRARRRGDEDRDRPMGGS 329
Query: 218 NTT---------YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTN 268
Y AC S C KK+++ G Y C C+K +R +L V D T+
Sbjct: 330 QGAPDPQQAVIMYPACSS--CRKKLVENGEGDYTCYACDKSHAQADWRYMLMVNFVDHTS 387
Query: 269 SVWVTLFQNEAESILGVTAQEVGE-STEDHPALKKALFTQYI-FR--LRAKLEHYNGTKK 324
+V V F ++AE +LGV A E+ +D L L + FR +RA++E YNG ++
Sbjct: 388 NVAVRCFADQAEELLGVPANELQTWPLKDKEKLMDCLLPLDVYFRVVIRARVETYNGEER 447
Query: 325 I 325
+
Sbjct: 448 V 448
Score = 105 bits (263), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 117/208 (56%), Gaps = 9/208 (4%)
Query: 447 SLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNRFHD 505
+L+PY +W +K RV +T + NAR + F+ DL D SGE IRA + D ++
Sbjct: 19 TLNPYVVRWCLKVRVVERTDLISTKNAR---QFFTADLKDASGEVIRAVFWGDAAEQWSP 75
Query: 506 MIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPC-NEDEVGNMPSVKYCFVP 564
++++ KVY +S ++ ANK+F+++ + YE+ F + ++ +E ++ +K +
Sbjct: 76 VLKQGKVYQMSKGRVQVANKRFNTVGHQYELVFYRDSEIVEVPDEGDISTARKLK-ALMS 134
Query: 565 LKTIAEISPDENI--DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
L+ IAE + DVL V +++ ++SV K + + +R++ +VD+SQ + ++LWG
Sbjct: 135 LRDIAESKREVPFFADVLVVVVESQPITSVVSKKTGEEFKRRNVKVVDRSQYEMEISLWG 194
Query: 623 KEAETFDASNKP-VIAVKAARVSEFQGN 649
+ + + + P V+A +V E+QG
Sbjct: 195 NQVDALEGVSLPRVVAFTGLQVREWQGG 222
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
Y AC S C KK+++ G Y C C+K +R +L V D T++V V F ++AE
Sbjct: 342 YPACSS--CRKKLVENGEGDYTCYACDKSHAQADWRYMLMVNFVDHTSNVAVRCFADQAE 399
Query: 746 SILGVTAQEVGE-STEDHPALKKALFTQYI-FR--LRAKLEHYN 785
+LGV A E+ +D L L + FR +RA++E YN
Sbjct: 400 ELLGVPANELQTWPLKDKEKLMDCLLPLDVYFRVVIRARVETYN 443
>gi|340504872|gb|EGR31278.1| kelch motif family protein, putative [Ichthyophthirius multifiliis]
Length = 705
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 109/431 (25%), Positives = 184/431 (42%), Gaps = 62/431 (14%)
Query: 350 LSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKIGNPQPLNTNTDNSS 409
L +FTI++ K+Y S T R LII II T I IG P
Sbjct: 260 LQQFTIIKCKKY-----KEQSQTER--LIIQSYQIIY--TNIDTMIGKPL---------- 300
Query: 410 TQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIRE 469
+ N N +N+ + + I L P ++ KARVT K R
Sbjct: 301 --EHKQFKKQNFINHEGSNIIPTKYYNEEEGDLLTIAELYPNIEQFKFKARVTKKGTKRN 358
Query: 470 WNNARGSGK-LFSIDLLD-ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKF 527
+ +G+ LF ID++D E+ T F E +RF D+IE+ Y ++
Sbjct: 359 FTTKKGTNSYLFGIDIIDINQDEMSITFFEQEVDRFIDIIEQGHTYIFQIGKIQ------ 412
Query: 528 SSINNDY-----EMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 582
S+ NN Y +M+ + T ++ +ED+ + +K L I ++S ++ IDV+
Sbjct: 413 SNDNNQYKKGKIQMTASRDTQIMAIDEDK--RITQLKIERKMLSDIQQLSKNDKIDVI-C 469
Query: 583 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 642
++ E +T KT ++ K++I + D+S V +WG E + + ++ +K +
Sbjct: 470 LVNKEERKIITLKTGEQR-PKKEIFIFDESGVEVEFDIWGDEGDQMTYNKGDILLIKDGK 528
Query: 643 VSEFQGNLLLM--------------REIQDQQLGMGDKAD-----YCSVRGIIQVFRGSN 683
V E+ GN L + +D +L ++ D + +R I + +
Sbjct: 529 VGEYNGNKFLQWSSFMTQIITNPDPQSFKDAKL--NNQLDENLKIWTEIRAFILRVKDTP 586
Query: 684 TTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNE 743
Y ACP C KK+ ++ + Y C+ C + + R I + IGD + +WV +
Sbjct: 587 LYYNACPK--CLKKIREEGDSWY-CQSCLENRSEPQARYISSICIGDASGQIWVNAYDEV 643
Query: 744 AESILGVTAQE 754
A ILG +A E
Sbjct: 644 AREILGCSADE 654
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 119/284 (41%), Gaps = 47/284 (16%)
Query: 11 SSINNDY-----EMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
S+ NN Y +M+ + T ++ +ED+ + +K L I ++S ++ IDV+
Sbjct: 413 SNDNNQYKKGKIQMTASRDTQIMAIDEDK--RITQLKIERKMLSDIQQLSKNDKIDVI-C 469
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
++ E +T KT ++ K++I + D+S V +WG E + + ++ +K +
Sbjct: 470 LVNKEERKIITLKTGEQR-PKKEIFIFDESGVEVEFDIWGDEGDQMTYNKGDILLIKDGK 528
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
V E+ G K L S F TQ T +P S + + NL
Sbjct: 529 VGEYNGNKFLQWSS-------------------FMTQIITNPDPQSFKDAKLNNQLDENL 569
Query: 186 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 245
+ EI R I + + Y ACP C KK+ ++ + Y C+
Sbjct: 570 KIWTEI----------------RAFILRVKDTPLYYNACPK--CLKKIREEGDSWY-CQS 610
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
C + + R I + IGD + +WV + A ILG +A E
Sbjct: 611 CLENRSEPQARYISSICIGDASGQIWVNAYDEVAREILGCSADE 654
>gi|62318947|dbj|BAD94042.1| RNA helicase [Arabidopsis thaliana]
Length = 253
Score = 105 bits (263), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 106/221 (47%), Gaps = 16/221 (7%)
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGG 176
PVIA+K+ +V +FQG ++S S+V+ +NP+ PE KL+ WF ++
Sbjct: 4 PVIAIKSLKVGDFQGVSLSTISRSNVV-INPESPEAKKLKSWFDSEGKEISMSSIGSGMS 62
Query: 177 MGGGAAGNLL-----LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDCN 230
L L+ I +K + S R I + T Y+AC + CN
Sbjct: 63 PSAKNGSRSLYTDRVLLSHITSNPSLFEEKPVFFSTRAYISFIKPDQTMWYQACKT--CN 120
Query: 231 KKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 290
KKV + + Y CE C +++ + R I+ V + D + W++ F +EAE ILG +A E+
Sbjct: 121 KKVTEALDSGYWCEGCQRKYEECSLRYIMAVKVTDSSGETWISSFNDEAEKILGCSADEL 180
Query: 291 -------GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKK 324
GE E LK+A ++ ++FR+ YNG K+
Sbjct: 181 NKLKSEEGEVNEYQTKLKEATWSSHVFRVSVTQNEYNGEKR 221
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 10/143 (6%)
Query: 651 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDCNKKVIDQNNGMYRCE 709
+L+ I +K + S R I + T Y+AC + CNKKV + + Y CE
Sbjct: 77 VLLSHITSNPSLFEEKPVFFSTRAYISFIKPDQTMWYQACKT--CNKKVTEALDSGYWCE 134
Query: 710 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-------GESTEDH 762
C +++ + R I+ V + D + W++ F +EAE ILG +A E+ GE E
Sbjct: 135 GCQRKYEECSLRYIMAVKVTDSSGETWISSFNDEAEKILGCSADELNKLKSEEGEVNEYQ 194
Query: 763 PALKKALFTQYIFRLRAKLEHYN 785
LK+A ++ ++FR+ YN
Sbjct: 195 TKLKEATWSSHVFRVSVTQNEYN 217
>gi|391336033|ref|XP_003742388.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Metaseiulus occidentalis]
Length = 173
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 76/138 (55%), Gaps = 5/138 (3%)
Query: 197 GMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYR 256
G+ DK Y R I +F + YKACP+++C KK DQ +G Y CEKC F +R
Sbjct: 10 GVTDKPLYLWNRATITMFNKETSMYKACPNENCMKKAQDQGDGNYSCEKCATSGPNFKWR 69
Query: 257 LILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----ALKKALFTQYIFR 311
L+L + + D T +W T F +AE ILGVTA +G+ +E++P A+F Q+ F+
Sbjct: 70 LVLKMAVADATKQLWCTAFNEKAEQILGVTAATLGDYSENNPDEMDKIFADAMFKQFHFK 129
Query: 312 LRAKLEHYNGTKKIPDGV 329
R ++E Y ++ V
Sbjct: 130 FRGRMEVYQDERRFNTAV 147
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 73/128 (57%), Gaps = 5/128 (3%)
Query: 662 GMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYR 721
G+ DK Y R I +F + YKACP+++C KK DQ +G Y CEKC F +R
Sbjct: 10 GVTDKPLYLWNRATITMFNKETSMYKACPNENCMKKAQDQGDGNYSCEKCATSGPNFKWR 69
Query: 722 LILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----ALKKALFTQYIFR 776
L+L + + D T +W T F +AE ILGVTA +G+ +E++P A+F Q+ F+
Sbjct: 70 LVLKMAVADATKQLWCTAFNEKAEQILGVTAATLGDYSENNPDEMDKIFADAMFKQFHFK 129
Query: 777 LRAKLEHY 784
R ++E Y
Sbjct: 130 FRGRMEVY 137
>gi|237836603|ref|XP_002367599.1| replication factor-A C terminal domain-containing protein
[Toxoplasma gondii ME49]
gi|211965263|gb|EEB00459.1| replication factor-A C terminal domain-containing protein
[Toxoplasma gondii ME49]
Length = 732
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 94/358 (26%), Positives = 167/358 (46%), Gaps = 41/358 (11%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIP-CNEDEVGNMPSVKYCFVPLKTIAEISPDENI--DV 62
ANK+F+++ + YE+ F + + +E ++ +K + L+ IAE + DV
Sbjct: 314 ANKRFNTVGHQYELVFYRDSEITEVADEGDISTARKLK-ALMSLRDIAESKRELPFFADV 372
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKP-VIAV 121
L V +++ ++SV K + + +R++ +VD+SQ + ++LWG + + + + P V+A
Sbjct: 373 LVVVVESQPVTSVVSKKTGEEFKRRNVKVVDRSQYEMEISLWGNQVDALEGVSLPRVVAF 432
Query: 122 KAARVSEFQGGKTLSLS-----MSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQR-T 174
+V E+QGG+ S ++S+ S + L W+ + + RF +S+ T
Sbjct: 433 TGLQVREWQGGRQASTGKGGEILTSLQSFAGADKDSQTLLQWYKENSGSVRFASMSRSGT 492
Query: 175 GGMGG-GAAGNLLLMREIQDQQLGMGDKA-----------------DYCSVRGIIQVFRG 216
G MGG GA + + D+ M D A D R G
Sbjct: 493 GEMGGAGALEKRRVEEKCVDEIKQMTDGAFSFIGQIRRVYWRARRRDAGEDRDRQMGTSG 552
Query: 217 SNT-----TYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW 271
++ Y AC S C KK+++ G Y C C+K +R +L V D T+++
Sbjct: 553 ADAQQAVIMYPACSS--CRKKLVENGEGDYTCYACDKPHAQADWRYMLMVNFVDHTSNIT 610
Query: 272 VTLFQNEAESILGVTAQEVGEST--EDHPALKKALFTQYIFR--LRAKLEHYNGTKKI 325
+ F ++AE +LGV A E+ + E L L FR +RA++E YNG +++
Sbjct: 611 IRCFADQAEELLGVPANELQTWSLKEKEKLLDCLLPLDVYFRVVIRARVEMYNGEERV 668
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 115/208 (55%), Gaps = 9/208 (4%)
Query: 447 SLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNRFHD 505
+L+PY +W +K RV +T + NAR + F+ DL D SGE IRA + D +
Sbjct: 240 TLNPYVVRWRLKVRVVERTDLMSTKNAR---QFFTADLKDASGEVIRAVFWGDAAEHWSP 296
Query: 506 MIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIP-CNEDEVGNMPSVKYCFVP 564
++++ KVY +S ++ ANK+F+++ + YE+ F + + +E ++ +K +
Sbjct: 297 VLKQGKVYQMSKGRVQVANKRFNTVGHQYELVFYRDSEITEVADEGDISTARKLK-ALMS 355
Query: 565 LKTIAEISPDENI--DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
L+ IAE + DVL V +++ ++SV K + + +R++ +VD+SQ + ++LWG
Sbjct: 356 LRDIAESKRELPFFADVLVVVVESQPVTSVVSKKTGEEFKRRNVKVVDRSQYEMEISLWG 415
Query: 623 KEAETFDASNKP-VIAVKAARVSEFQGN 649
+ + + + P V+A +V E+QG
Sbjct: 416 NQVDALEGVSLPRVVAFTGLQVREWQGG 443
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
Y AC S C KK+++ G Y C C+K +R +L V D T+++ + F ++AE
Sbjct: 562 YPACSS--CRKKLVENGEGDYTCYACDKPHAQADWRYMLMVNFVDHTSNITIRCFADQAE 619
Query: 746 SILGVTAQEVGEST--EDHPALKKALFTQYIFR--LRAKLEHYN 785
+LGV A E+ + E L L FR +RA++E YN
Sbjct: 620 ELLGVPANELQTWSLKEKEKLLDCLLPLDVYFRVVIRARVEMYN 663
>gi|195330774|ref|XP_002032078.1| GM26361 [Drosophila sechellia]
gi|194121021|gb|EDW43064.1| GM26361 [Drosophila sechellia]
Length = 228
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 96/199 (48%), Gaps = 9/199 (4%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI SL+ +IKARV K+ I +W + G ++ + LLDESGEI +F D N F
Sbjct: 1 PICSLTTGFYISSIKARVIWKSEITQWRKGQKCGIVYIMHLLDESGEITGIVFADYDNGF 60
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+ I+ VY IS ++ A + +N Y++ F H+ + G +P KY F+
Sbjct: 61 YGQIQPGLVYLISGFDVEEAISDYKVSDNPYQLFFRHNIVL---ELSACGRIPREKYNFL 117
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
PL ++ + + +D +G+C L G + R+I LVD V + LW K
Sbjct: 118 PLVKVSSKADKDPVDAIGICTAVGRLEERRG------FFIREILLVDPFYHPVMLNLWQK 171
Query: 624 EAETFDASNKPVIAVKAAR 642
EA F VI VK AR
Sbjct: 172 EAVNFVGQPNDVIVVKGAR 190
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 9/149 (6%)
Query: 14 NNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELS 73
+N Y++ F H+ + G +P KY F+PL ++ + + +D +G+C L
Sbjct: 88 DNPYQLFFRHNIVL---ELSACGRIPREKYNFLPLVKVSSKADKDPVDAIGICTAVGRLE 144
Query: 74 SVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGK 133
G + R+I LVD V + LW KEA F VI VK AR
Sbjct: 145 ERRG------FFIREILLVDPFYHPVMLNLWQKEAVNFVGQPNDVIVVKGARAQPHNNKM 198
Query: 134 TLSLSMSSVLSLNPDIPECHKLQGWFSTQ 162
L+ S + + +NPDIP+ L W++ Q
Sbjct: 199 KLNASWYTNVQINPDIPDATALLAWYNNQ 227
>gi|340387334|ref|XP_003392162.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Amphimedon queenslandica]
Length = 91
Score = 104 bits (260), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/90 (51%), Positives = 68/90 (75%), Gaps = 1/90 (1%)
Query: 455 WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYY 514
WTIKARVT+K P+R +NN+RG G++ +++ +D SGEIRAT FN++ +RF +E +KVYY
Sbjct: 1 WTIKARVTSKPPLRHYNNSRGEGRILTLEFVDHSGEIRATAFNEDADRFFPNVEVNKVYY 60
Query: 515 ISNCTLKPANKKFSSINNDYEMSFTHSTTV 544
+S +KPANK + + NNDYE++ TT+
Sbjct: 61 VSRGRIKPANKIYYA-NNDYELTLGAETTI 89
>gi|238616412|ref|XP_002399041.1| hypothetical protein MPER_00208 [Moniliophthora perniciosa FA553]
gi|215477155|gb|EEB99971.1| hypothetical protein MPER_00208 [Moniliophthora perniciosa FA553]
Length = 94
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 65/92 (70%)
Query: 453 NKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKV 512
N WTIKARVT K+ ++ W+N RG GKLF++ L+DESGEIR T FN + + +++ KV
Sbjct: 1 NNWTIKARVTQKSDMKTWSNQRGEGKLFNVTLMDESGEIRGTAFNAVADDLYGRLDEGKV 60
Query: 513 YYISNCTLKPANKKFSSINNDYEMSFTHSTTV 544
YYIS + A KKFS+++NDYE+S +T +
Sbjct: 61 YYISKAKVNLAKKKFSNVSNDYELSLERNTEI 92
>gi|221505253|gb|EEE30907.1| replication factor, putative [Toxoplasma gondii VEG]
Length = 726
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 115/208 (55%), Gaps = 9/208 (4%)
Query: 447 SLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNRFHD 505
+L+PY +W +K RV +T + NAR + F+ DL D SGE IRA + D +
Sbjct: 234 TLNPYVVRWCLKVRVVERTDLMSTKNAR---QFFTADLKDASGEVIRAVFWGDAAEHWSP 290
Query: 506 MIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIP-CNEDEVGNMPSVKYCFVP 564
++++ KVY +S ++ ANK+F+++ + YE+ F + + +E ++ +K +
Sbjct: 291 VLKQGKVYQMSKGRVQVANKRFNTVGHQYELVFYRDSEITEVADEGDISTARKLK-ALMS 349
Query: 565 LKTIAEISPDENI--DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
L+ IAE + DVL V +++ ++SV K + + +R++ +VD+SQ + ++LWG
Sbjct: 350 LRDIAESKRELPFFADVLVVVVESQPVTSVVSKKTGEEFKRRNVKVVDRSQYEMEISLWG 409
Query: 623 KEAETFDASNKP-VIAVKAARVSEFQGN 649
+ + + + P V+A +V E+QG
Sbjct: 410 NQVDALEGVSLPRVVAFTGLQVREWQGG 437
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 93/360 (25%), Positives = 166/360 (46%), Gaps = 45/360 (12%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIP-CNEDEVGNMPSVKYCFVPLKTIAEISPDENI--DV 62
ANK+F+++ + YE+ F + + +E ++ +K + L+ IAE + DV
Sbjct: 308 ANKRFNTVGHQYELVFYRDSEITEVADEGDISTARKLK-ALMSLRDIAESKRELPFFADV 366
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKP-VIAV 121
L V +++ ++SV K + + +R++ +VD+SQ + ++LWG + + + + P V+A
Sbjct: 367 LVVVVESQPVTSVVSKKTGEEFKRRNVKVVDRSQYEMEISLWGNQVDALEGVSLPRVVAF 426
Query: 122 KAARVSEFQGGKTLSLS-----MSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTG 175
+V E+QGG+ S ++S+ S + L W+ + + RF +S+
Sbjct: 427 TGLQVREWQGGRQASTGKGSEILTSLQSFAGADKDSQSLLQWYKENSGSVRFASMSRGGT 486
Query: 176 GMGGGAAGNLLLMREIQ----DQQLGMGDKA-----------------DYCSVRGIIQVF 214
G GGA L R ++ D+ M D A D R
Sbjct: 487 GEMGGAGA--LEKRRVEEKCVDEIKQMTDGAFSFIGQIRRVYWRARRRDAGEDRDRQMGT 544
Query: 215 RGSNT-----TYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNS 269
G++ Y AC S C KK+++ G Y C C+K +R +L V D T++
Sbjct: 545 SGADAQQAVIMYPACSS--CRKKLVENGEGDYTCYACDKPHAQADWRYMLMVNFVDHTSN 602
Query: 270 VWVTLFQNEAESILGVTAQEVGEST--EDHPALKKALFTQYIFR--LRAKLEHYNGTKKI 325
+ + F ++AE +LGV A E+ + E L L FR +RA++E YNG +++
Sbjct: 603 ITIRCFADQAEELLGVPANELQTWSLKEKEKLLDCLLPLDVYFRVVIRARVEMYNGEERV 662
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
Y AC S C KK+++ G Y C C+K +R +L V D T+++ + F ++AE
Sbjct: 556 YPACSS--CRKKLVENGEGDYTCYACDKPHAQADWRYMLMVNFVDHTSNITIRCFADQAE 613
Query: 746 SILGVTAQEVGEST--EDHPALKKALFTQYIFR--LRAKLEHYN 785
+LGV A E+ + E L L FR +RA++E YN
Sbjct: 614 ELLGVPANELQTWSLKEKEKLLDCLLPLDVYFRVVIRARVEMYN 657
>gi|221483976|gb|EEE22280.1| replication factor, putative [Toxoplasma gondii GT1]
Length = 726
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 115/208 (55%), Gaps = 9/208 (4%)
Query: 447 SLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNRFHD 505
+L+PY +W +K RV +T + NAR + F+ DL D SGE IRA + D +
Sbjct: 234 TLNPYVVRWCLKVRVVERTDLMSTKNAR---QFFTADLKDASGEVIRAVFWGDAAEHWSP 290
Query: 506 MIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIP-CNEDEVGNMPSVKYCFVP 564
++++ KVY +S ++ ANK+F+++ + YE+ F + + +E ++ +K +
Sbjct: 291 VLKQGKVYQMSKGRVQVANKRFNTVGHQYELVFYRDSEITEVADEGDISTARKLK-ALMS 349
Query: 565 LKTIAEISPDENI--DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
L+ IAE + DVL V +++ ++SV K + + +R++ +VD+SQ + ++LWG
Sbjct: 350 LRDIAESKRELPFFADVLVVVVESQPVTSVVSKKTGEEFKRRNVKVVDRSQYEMEISLWG 409
Query: 623 KEAETFDASNKP-VIAVKAARVSEFQGN 649
+ + + + P V+A +V E+QG
Sbjct: 410 NQVDALEGVSLPRVVAFTGLQVREWQGG 437
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 92/369 (24%), Positives = 168/369 (45%), Gaps = 63/369 (17%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIP-CNEDEVGNMPSVKYCFVPLKTIAEISPDENI--DV 62
ANK+F+++ + YE+ F + + +E ++ +K + L+ IAE + DV
Sbjct: 308 ANKRFNTVGHQYELVFYRDSEITEVADEGDISTARKLK-ALMSLRDIAESKRELPFFADV 366
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKP-VIAV 121
L V +++ ++SV K + + +R++ +VD+SQ + ++LWG + + + + P V+A
Sbjct: 367 LVVVVESQPVTSVVSKKTGEEFKRRNVKVVDRSQYEMEISLWGNQVDALEGVSLPRVVAF 426
Query: 122 KAARVSEFQGGKTLSLS-----MSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTG 175
+V E+QGG+ S ++S+ S + L W+ + + RF +S+
Sbjct: 427 TGLQVREWQGGRQASTGKGSEILTSLQSFAGADKDSQSLLQWYKENSGSVRFASMSRGGT 486
Query: 176 G-----------------------MGGGA---AGNLLLMR---------EIQDQQLGMGD 200
G M GA G + + E +D+Q+G
Sbjct: 487 GEMGGAGALEKRRVEEKCVDEIKQMTDGAFSFIGQIRRVYWRARRRDTGEDRDRQMGTSG 546
Query: 201 KADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILP 260
AD + + +I Y AC S C KK+++ G Y C C+K +R +L
Sbjct: 547 -AD--AQQAVIM--------YPACSS--CRKKLVENGEGDYTCYACDKPHAQADWRYMLM 593
Query: 261 VMIGDWTNSVWVTLFQNEAESILGVTAQEVGEST--EDHPALKKALFTQYIFR--LRAKL 316
V D T+++ + F ++AE +LGV A E+ + E L L FR +RA++
Sbjct: 594 VNFVDHTSNITIRCFADQAEELLGVPANELQTWSLKEKEKLLDCLLPLDVYFRVVIRARV 653
Query: 317 EHYNGTKKI 325
E YNG +++
Sbjct: 654 EMYNGEERV 662
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
Y AC S C KK+++ G Y C C+K +R +L V D T+++ + F ++AE
Sbjct: 556 YPACSS--CRKKLVENGEGDYTCYACDKPHAQADWRYMLMVNFVDHTSNITIRCFADQAE 613
Query: 746 SILGVTAQEVGEST--EDHPALKKALFTQYIFR--LRAKLEHYN 785
+LGV A E+ + E L L FR +RA++E YN
Sbjct: 614 ELLGVPANELQTWSLKEKEKLLDCLLPLDVYFRVVIRARVEMYN 657
>gi|294876282|ref|XP_002767631.1| replication protein A large subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239869313|gb|EER00349.1| replication protein A large subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 286
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 136/275 (49%), Gaps = 25/275 (9%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK++SS N++YE+ F + ++ +D ++ +KY F P++ + S +D+L V
Sbjct: 12 ANKRYSSCNHNYEIVFEEDSQIVEVQDDVEDHIDKIKYSFCPVRELKSKSVPSTVDLLVV 71
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS---NKPVIAVK 122
D +V K N +R++T+ D+S V +T W D S +PV+A+K
Sbjct: 72 IKDHRPAGTVNSK-NGAELFRRNLTVCDESGCCVDVTFWNDLVNVVDESVLQTQPVVAMK 130
Query: 123 AARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFS-TQTNTRFEPVSQRTGGMGGGA 181
V ++ GG++ S S+ + +NPDIPE +L+ W++ T + F +SQ+ G G+
Sbjct: 131 GVSVRDY-GGRSCSTLNSTQIEVNPDIPEAKQLKIWWANTGCSMAFTNLSQQ-GTSVPGS 188
Query: 182 AGNLLLMREI-------QDQQLGMGDKADYCSVRGIIQVF--RGSNTT-----YKACPSQ 227
G ++ +E+ + + +G + G +Q RG + Y AC S
Sbjct: 189 GGQAMVTKEMTIAEMKNDVKNMDLGGLMHSYEIIGRLQFVTTRGRDGNDIPIFYMACES- 247
Query: 228 DCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 262
CN+K+ + ++G C+ CN++ T R L +
Sbjct: 248 -CNRKMAEGSDGF--CQACNRQVRTRNLRPCLSAL 279
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 4/140 (2%)
Query: 512 VYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI 571
VY S +K ANK++SS N++YE+ F + ++ +D ++ +KY F P++ +
Sbjct: 1 VYTFSKGNVKVANKRYSSCNHNYEIVFEEDSQIVEVQDDVEDHIDKIKYSFCPVRELKSK 60
Query: 572 SPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS 631
S +D+L V D +V K N +R++T+ D+S V +T W D S
Sbjct: 61 SVPSTVDLLVVIKDHRPAGTVNSK-NGAELFRRNLTVCDESGCCVDVTFWNDLVNVVDES 119
Query: 632 ---NKPVIAVKAARVSEFQG 648
+PV+A+K V ++ G
Sbjct: 120 VLQTQPVVAMKGVSVRDYGG 139
>gi|67468384|ref|XP_650233.1| replication factor A protein 1 [Entamoeba histolytica HM-1:IMSS]
gi|56466826|gb|EAL44846.1| replication factor A protein 1, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 588
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 117/438 (26%), Positives = 179/438 (40%), Gaps = 97/438 (22%)
Query: 425 VHNNVAIPRQASAPVV----QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLF 480
V V + Q +AP + P L+ + +K IK RV +K ++ G LF
Sbjct: 125 VRTGVPVSHQQAAPADLSKGKITPFSLLTTFGSKLIIKGRVVSKNDKFKY----AKGNLF 180
Query: 481 SIDLLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKK--FSSINNDYEMS 537
S L D+ G EI+AT FND C+ D I+ + YYI+ K +N K S+ D +M
Sbjct: 181 SFVLQDKDGAEIKATCFNDVCDEKFDQIKVGETYYITKADYKQSNGKGYRSAKMIDLDM- 239
Query: 538 FTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTN 597
T+I + DEV + S+ VP+ + E D D+ +D +T
Sbjct: 240 IIGKYTIIQKSSDEVPMISSI----VPIADLVESPVDATYDICAFLVDKG-----PEQTY 290
Query: 598 QKTYMKRDITLVDQSQASVTMTLWGKEAE-TFDASN----------------KPVIAVKA 640
+ K +T +DQS +V + W ++ + T D N K + KA
Sbjct: 291 KNEKAKVTLTFMDQSSYAVEVDFWNEDIDKTKDMENGVVYVLTSLKLKEFKYKTLTVTKA 350
Query: 641 ARV------SEFQGNLLLMREIQDQ--------------------QLGMGD--KAD--YC 670
++ ++ L+ + IQ+ + GD AD YC
Sbjct: 351 TKILSNTDIEQYDEASLVNKFIQEHTTPEGITVSDLRYLANETTVEFKSGDIRTADQLYC 410
Query: 671 -----------------SVRGIIQVFRGSNT-TYKACPSQDCNKKVIDQNNGMYRCEKCN 712
+V G +F+ N Y +CP DC KK+++ G CEKC
Sbjct: 411 LRKLEEKTSETSEDVKANVYGYFTMFKVDNGFCYLSCP--DCKKKIVE---GSTFCEKCQ 465
Query: 713 KEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQ 772
K+ R I+ I D T+S+WVT+F E + I+G +A E+ E E L + LF Q
Sbjct: 466 KDIQPMR-RFIVRASIADSTSSIWVTIFDEEMKKIIGKSADEMYEINEQDSELFENLFKQ 524
Query: 773 YI-----FRLRAKLEHYN 785
F L K + YN
Sbjct: 525 LTFIECRFHLICKKDEYN 542
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 146/332 (43%), Gaps = 51/332 (15%)
Query: 26 TVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYM 85
T+I + DEV + S+ VP+ + E D D+ +D +T +
Sbjct: 245 TIIQKSSDEVPMISSI----VPIADLVESPVDATYDICAFLVDKG-----PEQTYKNEKA 295
Query: 86 KRDITLVDQSQASVTMTLWGKEAE-TFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLS 144
K +T +DQS +V + W ++ + T D N V + + ++ EF+ KTL+++ ++ +
Sbjct: 296 KVTLTFMDQSSYAVEVDFWNEDIDKTKDMENGVVYVLTSLKLKEFKY-KTLTVTKATKIL 354
Query: 145 LNPDI------------------PECHKLQG--WFSTQTNTRFEPVSQRTGGMGGGAAGN 184
N DI PE + + + +T F+ RT A
Sbjct: 355 SNTDIEQYDEASLVNKFIQEHTTPEGITVSDLRYLANETTVEFKSGDIRT-------ADQ 407
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNT-TYKACPSQDCNKKVIDQNNGMYRC 243
L +R+++++ + +V G +F+ N Y +CP DC KK+++ G C
Sbjct: 408 LYCLRKLEEKTSETSEDVK-ANVYGYFTMFKVDNGFCYLSCP--DCKKKIVE---GSTFC 461
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
EKC K+ R I+ I D T+S+WVT+F E + I+G +A E+ E E L +
Sbjct: 462 EKCQKDIQPMR-RFIVRASIADSTSSIWVTIFDEEMKKIIGKSADEMYEINEQDSELFEN 520
Query: 304 LFTQYI-----FRLRAKLEHYNGTKKIPDGVN 330
LF Q F L K + YNG + VN
Sbjct: 521 LFKQLTFIECRFHLICKKDEYNGETRTRFTVN 552
>gi|407037414|gb|EKE38631.1| replication factor A protein 1, putative [Entamoeba nuttalli P19]
Length = 588
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 117/438 (26%), Positives = 179/438 (40%), Gaps = 97/438 (22%)
Query: 425 VHNNVAIPRQASAPVV----QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLF 480
V V + Q +AP + P L+ + +K IK RV +K ++ G LF
Sbjct: 125 VRTGVPVSHQQAAPADLSKGKITPFSLLTTFGSKLIIKGRVVSKNDKFKY----AKGNLF 180
Query: 481 SIDLLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKK--FSSINNDYEMS 537
S L D+ G EI+AT FND C+ D I+ + YYI+ K +N K S+ D +M
Sbjct: 181 SFVLQDKDGAEIKATCFNDVCDEKFDQIKVGETYYITKADYKQSNGKGYRSAKMIDLDM- 239
Query: 538 FTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTN 597
T+I + DEV + S+ VP+ + E D D+ +D +T
Sbjct: 240 IIGKYTIIQKSSDEVPMISSI----VPIADLVESPVDATYDICAFLVDKG-----PEQTY 290
Query: 598 QKTYMKRDITLVDQSQASVTMTLWGKEAE-TFDASN----------------KPVIAVKA 640
+ K +T +DQS +V + W ++ + T D N K + KA
Sbjct: 291 KNEKAKVTLTFMDQSSYAVEVDFWNEDIDKTKDMENGVVYVLTSLKLKEFKYKTLTVTKA 350
Query: 641 ARV------SEFQGNLLLMREIQDQ--------------------QLGMGD--KAD--YC 670
++ ++ L+ + IQ+ + GD AD YC
Sbjct: 351 TKILSNTDIEQYDEASLVNKFIQEHTTPEGITVSDLRYLANETTVEFKSGDVRTADQLYC 410
Query: 671 -----------------SVRGIIQVFRGSNT-TYKACPSQDCNKKVIDQNNGMYRCEKCN 712
+V G +F+ N Y +CP DC KK+++ G CEKC
Sbjct: 411 LRKLEEKTSETSEDVKANVYGYFTMFKVDNGFCYLSCP--DCKKKIVE---GSTFCEKCQ 465
Query: 713 KEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQ 772
K+ R I+ I D T+S+WVT+F E + I+G +A E+ E E L + LF Q
Sbjct: 466 KDIQPMR-RFIVRASIADSTSSIWVTIFDEEMKKIIGKSADEMYEINEQDSELFENLFKQ 524
Query: 773 YI-----FRLRAKLEHYN 785
F L K + YN
Sbjct: 525 LTFIECRFHLICKKDEYN 542
Score = 89.4 bits (220), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 152/351 (43%), Gaps = 58/351 (16%)
Query: 26 TVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYM 85
T+I + DEV + S+ VP+ + E D D+ +D +T +
Sbjct: 245 TIIQKSSDEVPMISSI----VPIADLVESPVDATYDICAFLVDKG-----PEQTYKNEKA 295
Query: 86 KRDITLVDQSQASVTMTLWGKEAE-TFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLS 144
K +T +DQS +V + W ++ + T D N V + + ++ EF+ KTL+++ ++ +
Sbjct: 296 KVTLTFMDQSSYAVEVDFWNEDIDKTKDMENGVVYVLTSLKLKEFKY-KTLTVTKATKIL 354
Query: 145 LNPDI------------------PECHKLQG--WFSTQTNTRFEPVSQRTGGMGGGAAGN 184
N DI PE + + + +T F+ RT A
Sbjct: 355 SNTDIEQYDEASLVNKFIQEHTTPEGITVSDLRYLANETTVEFKSGDVRT-------ADQ 407
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNT-TYKACPSQDCNKKVIDQNNGMYRC 243
L +R+++++ + +V G +F+ N Y +CP DC KK+++ G C
Sbjct: 408 LYCLRKLEEKTSETSEDVK-ANVYGYFTMFKVDNGFCYLSCP--DCKKKIVE---GSTFC 461
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
EKC K+ R I+ I D T+S+WVT+F E + I+G +A E+ E E L +
Sbjct: 462 EKCQKDIQPMR-RFIVRASIADSTSSIWVTIFDEEMKKIIGKSADEMYEINEQDSELFEN 520
Query: 304 LFTQYI-----FRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDIITDGT 349
LF Q F L K + YNG + VN Q+ D I GT
Sbjct: 521 LFKQLTFIECRFHLICKKDEYNGETRTRFTVNF-------IQVLDSIASGT 564
>gi|167376383|ref|XP_001733974.1| replication protein A 70 kDa DNA-binding subunit [Entamoeba dispar
SAW760]
gi|165904711|gb|EDR29890.1| replication protein A 70 kDa DNA-binding subunit, putative
[Entamoeba dispar SAW760]
Length = 588
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 117/438 (26%), Positives = 176/438 (40%), Gaps = 97/438 (22%)
Query: 425 VHNNVAIPRQASAPVV----QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLF 480
V V + Q +AP + P L+ + +K IK RV +K ++ G LF
Sbjct: 125 VKTGVPVSHQQAAPADLSKGKVTPFSLLTTFGSKLIIKGRVVSKNDKFKY----AKGNLF 180
Query: 481 SIDLLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKK--FSSINNDYEMS 537
S L D+ G EI+AT FND C+ D I+ + YYI+ K +N K S+ D +M
Sbjct: 181 SFVLQDKDGAEIKATCFNDVCDEKFDQIKVGETYYITKADYKQSNGKGYRSAKMIDLDM- 239
Query: 538 FTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTN 597
T+I + DEV + S+ VP+ + E D D+ +D +T
Sbjct: 240 IIGKYTIIQKSSDEVPMISSI----VPIADLVESPVDATYDICAFLVDKG-----PEQTY 290
Query: 598 QKTYMKRDITLVDQSQASVTMTLWGKEAE-TFDASNKPVIAVKAAR-------------- 642
+ K +T +DQS +V + W ++ + T D N V + + R
Sbjct: 291 KNEKAKVTLTFMDQSSYAVEVDFWNEDIDKTKDMENGVVYVLTSLRLREFKYKTLTVTKA 350
Query: 643 --------VSEFQGNLLLMREIQDQ--------------------QLGMGD--KAD--YC 670
+ ++ L+ + IQ+ + GD AD YC
Sbjct: 351 TKILSNTDIEQYDEASLVNKFIQEHTTTEGITVSDLRYLANETTVEFKAGDVRTADQLYC 410
Query: 671 -----------------SVRGIIQVFR-GSNTTYKACPSQDCNKKVIDQNNGMYRCEKCN 712
+V G +F+ S Y +CP DC KK+ D G CEKC
Sbjct: 411 LRKLEEKTTETSEDVKANVYGYFTMFKVDSGFCYLSCP--DCKKKIAD---GSTFCEKCQ 465
Query: 713 KEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQ 772
K+ R I+ I D T+SVWVT+F E + I+G +A E+ E E + LF Q
Sbjct: 466 KDIQPMR-RFIVRASIADSTSSVWVTIFDEEMKKIIGKSADEMYEMNEQDSESFENLFKQ 524
Query: 773 YI-----FRLRAKLEHYN 785
F L K + YN
Sbjct: 525 LTFIECRFHLVCKKDEYN 542
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 149/344 (43%), Gaps = 44/344 (12%)
Query: 26 TVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYM 85
T+I + DEV + S+ VP+ + E D D+ +D +T +
Sbjct: 245 TIIQKSSDEVPMISSI----VPIADLVESPVDATYDICAFLVDKG-----PEQTYKNEKA 295
Query: 86 KRDITLVDQSQASVTMTLWGKEAE-TFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLS 144
K +T +DQS +V + W ++ + T D N V + + R+ EF+ KTL+++ ++ +
Sbjct: 296 KVTLTFMDQSSYAVEVDFWNEDIDKTKDMENGVVYVLTSLRLREFKY-KTLTVTKATKIL 354
Query: 145 LNPDIP---ECHKLQGWFSTQTNTRFEPVS-------QRTGGMGGG---AAGNLLLMREI 191
N DI E + + T T VS + T G A L +R++
Sbjct: 355 SNTDIEQYDEASLVNKFIQEHTTTEGITVSDLRYLANETTVEFKAGDVRTADQLYCLRKL 414
Query: 192 QDQQLGMGDKADYCSVRGIIQVFR-GSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEF 250
+++ + +V G +F+ S Y +CP DC KK+ D G CEKC K+
Sbjct: 415 EEKTTETSEDVK-ANVYGYFTMFKVDSGFCYLSCP--DCKKKIAD---GSTFCEKCQKDI 468
Query: 251 NTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYI- 309
R I+ I D T+SVWVT+F E + I+G +A E+ E E + LF Q
Sbjct: 469 QPMR-RFIVRASIADSTSSVWVTIFDEEMKKIIGKSADEMYEMNEQDSESFENLFKQLTF 527
Query: 310 ----FRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDIITDGT 349
F L K + YNG + VN Q+ D I GT
Sbjct: 528 IECRFHLVCKKDEYNGETRTRYTVNF-------IQILDSIASGT 564
>gi|402594450|gb|EJW88376.1| BRCA2 repeat family protein [Wuchereria bancrofti]
Length = 539
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 97/388 (25%), Positives = 162/388 (41%), Gaps = 99/388 (25%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNR 502
PI L+PY W + +V + IR RG ++F+ +D+ G EIR + F D +R
Sbjct: 148 PIKLLTPYCKNWRLCIKVISVDEIR---CIRGQ-RIFAFQAVDDGGVEIRVSAFGDIAHR 203
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
+I +++YYI++ ++K ANK++S +D E+ + V C + P +
Sbjct: 204 TSTLICPEQMYYITHASVKMANKRYSRNQHDMEVVLRPDSEVTKCTD-----RPQI---- 254
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
+SP +K KR+I +VD S VT+ LWG
Sbjct: 255 --------LSP------------------------KKICKKREIQIVDDSGYYVTVNLWG 282
Query: 623 KEAETFDASN-KPVIAVKAARVSEFQGNLLLM-----REIQD------------------ 658
++A+ F + + V+AVK V FQG L L+ + + D
Sbjct: 283 QKAKVFPSEQYQHVLAVKGLLVRCFQGTLSLVSMASTKLLHDPHFPEADALRSWYSKNKD 342
Query: 659 --------------------QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKV 698
+QL + + ++ +I N YK C + C KK+
Sbjct: 343 KAFKSATVNQVSSFNEHRWIKQLKLSVDGHFFNLTAMISSIFIENAVYKGCLT--CKKKL 400
Query: 699 IDQNNG-MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG- 756
+ + +G +Y C KC N + Y L + + D+T +V VT F + + ++G A EV
Sbjct: 401 LVEKDGDLYICSKCGI-CNEYKYYYTLHMELFDFTGTVHVTAFDDCGQKLIGEQADEVAK 459
Query: 757 ----ESTEDHPALKKALFTQYIFRLRAK 780
+ + K LF Y+FRL A+
Sbjct: 460 FLRFDRDRYQSSFKSVLFKPYMFRLGAQ 487
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 114/242 (47%), Gaps = 19/242 (7%)
Query: 81 QKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN-KPVIAVKAARVSEFQGGKTLSLSM 139
+K KR+I +VD S VT+ LWG++A+ F + + V+AVK V FQG +L
Sbjct: 258 KKICKKREIQIVDDSGYYVTVNLWGQKAKVFPSEQYQHVLAVKGLLVRCFQGTLSLVSMA 317
Query: 140 SSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMG 199
S+ L +P PE L+ W+S + F+ + + R I +QL +
Sbjct: 318 STKLLHDPHFPEADALRSWYSKNKDKAFKSATV-------NQVSSFNEHRWI--KQLKLS 368
Query: 200 DKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNG-MYRCEKCNKEFNTFTYRLI 258
+ ++ +I N YK C + C KK++ + +G +Y C KC N + Y
Sbjct: 369 VDGHFFNLTAMISSIFIENAVYKGCLT--CKKKLLVEKDGDLYICSKCGI-CNEYKYYYT 425
Query: 259 LPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG-----ESTEDHPALKKALFTQYIFRLR 313
L + + D+T +V VT F + + ++G A EV + + K LF Y+FRL
Sbjct: 426 LHMELFDFTGTVHVTAFDDCGQKLIGEQADEVAKFLRFDRDRYQSSFKSVLFKPYMFRLG 485
Query: 314 AK 315
A+
Sbjct: 486 AQ 487
>gi|413944587|gb|AFW77236.1| hypothetical protein ZEAMMB73_509278 [Zea mays]
Length = 464
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 127/272 (46%), Gaps = 28/272 (10%)
Query: 73 SSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-ETFDASNKPVIAVKAARVSEFQG 131
+SV K + +T +KRDI + D + + T G+E + D+S PV+A+K+ +V +FQG
Sbjct: 171 TSVRRKIDNETILKRDIVVADVNDLA---TRAGQELLDMVDSS--PVVAIKSLKVFDFQG 225
Query: 132 GKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAGNLLLMRE 190
+LS S L +NPD+PE L W+ ++ +T P+S G G ++ R
Sbjct: 226 -MSLSTIDRSTLEINPDLPEAKNLMSWYDSEGKDTSLVPISAEAGATRAGGFKSMYFDRV 284
Query: 191 IQD---QQLGMG-DKADYCSVRGIIQVFRGSNTT-YKACPSQDCNKKVIDQNNGMYRCEK 245
MG +K + S+ II + Y+AC CNKKV + Y CE
Sbjct: 285 FLSYITSNPSMGQEKPVFFSLYAIISHIKPDQIMWYRAC--MTCNKKVTEVFRSGYWCEG 342
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP------- 298
C K + + R I+ + + D T+ WV++F AE I+G A E+ ++
Sbjct: 343 CQKNDSECSLRYIMVIKVSDPTSEAWVSVFNEHAEKIIGCNADELDRIRKEWARHRLQQG 402
Query: 299 ------ALKKALFTQYIFRLRAKLEHYNGTKK 324
LK+A + ++FR+ Y K+
Sbjct: 403 DDIYVLKLKEATWVPHLFRVSVTQHEYMNEKR 434
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
Y+AC CNKKV + Y CE C K + + R I+ + + D T+ WV++F AE
Sbjct: 320 YRAC--MTCNKKVTEVFRSGYWCEGCQKNDSECSLRYIMVIKVSDPTSEAWVSVFNEHAE 377
Query: 746 SILGVTAQEVGESTEDHP-------------ALKKALFTQYIFRLRAKLEHY 784
I+G A E+ ++ LK+A + ++FR+ Y
Sbjct: 378 KIIGCNADELDRIRKEWARHRLQQGDDIYVLKLKEATWVPHLFRVSVTQHEY 429
>gi|403336688|gb|EJY67538.1| Subunit of heterotrimeric Replication Protein A (RPA) [Oxytricha
trifallax]
Length = 664
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 145/316 (45%), Gaps = 32/316 (10%)
Query: 350 LSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKIGNPQPLNTNTDNSS 409
L E I+Q+K Y S + NR +++ + NII+ E KI TN
Sbjct: 2 LKEGQIIQLKEY----TKSNNFENRLLIVKKQFNIIESQQEAVNKICQKSRPQTNL---- 53
Query: 410 TQQTPAATNTNGSNGVHNNVAIPR-QASAPVVQTH----------PIVSLSPYQNKWTIK 458
P N ++ ++ + Q P+ + P L+ WTIK
Sbjct: 54 IANNPEDFNEKYLQTLNERISDQQEQVEQPLSKRQLQLLHSTNFVPFKQLNLQSQDWTIK 113
Query: 459 ARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNRFHDMIEKDKVYYISN 517
A++ K + WNN RG G L +IDL+D+ G I+AT F D +F +++++ VY +
Sbjct: 114 AKILKKHEKKCWNNERGQGLLMNIDLIDQWGSTIQATFFKDGVEKFENLLQEGNVYIFTC 173
Query: 518 CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDE----VGNMPSVKYCFVPLKTIAEISP 573
+K +N K++++++ Y ++F V C E +GN+ ++K L I ++
Sbjct: 174 GNVKTSNSKYTNMSSKYSLAFDKQALVKECETKEKFIPMGNLENIK----SLPEIYKLER 229
Query: 574 DENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF---DA 630
+ DV+ V I+ ++ N + ++ + D + + V + +WG+E F D
Sbjct: 230 GQKCDVI-VVIEQIGHTNFIPLKNGGLKQRSNLIVADDTGSCVLLCIWGREDIHFQDIDP 288
Query: 631 SNKPVIAVKAARVSEF 646
N V+ V+ A++S+F
Sbjct: 289 RNPSVLYVRNAKISDF 304
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 221 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 280
YKACP + C KK+ G+ C C K ++TF I D T+S+ V ++ E
Sbjct: 450 YKACPVEKCRKKMQITAKGL-ECRGCLKYYDTFVPAYSFSATISDHTDSIEVQFYRCHGE 508
Query: 281 SILGVTAQEVGESTED 296
++LG +AQ+ E E+
Sbjct: 509 ALLGCSAQKFVELKEN 524
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
YKACP + C KK+ G+ C C K ++TF I D T+S+ V ++ E
Sbjct: 450 YKACPVEKCRKKMQITAKGL-ECRGCLKYYDTFVPAYSFSATISDHTDSIEVQFYRCHGE 508
Query: 746 SILGVTAQEVGESTED 761
++LG +AQ+ E E+
Sbjct: 509 ALLGCSAQKFVELKEN 524
>gi|145545796|ref|XP_001458582.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426402|emb|CAK91185.1| unnamed protein product [Paramecium tetraurelia]
Length = 730
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 95/420 (22%), Positives = 177/420 (42%), Gaps = 79/420 (18%)
Query: 431 IPRQ---ASAPVVQTHPIVSLSP-YQNKWTIKARVTNKTPIREWNNA-RGSGKLFSIDLL 485
IP Q + P + P+ ++P +Q + + RV I+ + + GK+F I ++
Sbjct: 291 IPNQRNNKNNPQIDFFPLYQINPSFQQPF--RGRVVKVNEIKSYTTKNQKDGKMFGIQVI 348
Query: 486 DESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPAN-----KKFSSINNDYEMSFTH 540
DE + A F+ +FHD I + + Y S +KPA +K + DY +F
Sbjct: 349 DEENLVSAMFFDSAAEKFHDYIVQGRCYIFSGVLVKPAKNLEQLQKIGCLPFDY--TFDQ 406
Query: 541 STTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKT 600
++ +I D+V +P + FV L +I++ DV+ V ++ + K +
Sbjct: 407 NSQIIEI--DDVPGIPLNTFNFVKLNSISQQKVGSIQDVVVVIKSSSGVKEFQQKNKDEK 464
Query: 601 YMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLL-------- 652
+ + + D S + +TL+G A+ + + K+ +++E+QG L
Sbjct: 465 STRIQLGVYDDSLQEIEITLYGHLAQQYPYQVGEIYMFKSLKINEYQGRKSLQNNYQTSI 524
Query: 653 --------MREIQ--------------------------------DQQLGMGDKADYCSV 672
++E+Q DQ L + Y V
Sbjct: 525 HFDKNQKEVKELQNWLQNFDGKLAEPVSKIKLISELINESNKCELDQNLKI-----YSDV 579
Query: 673 RGIIQVFRGSNTT-YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDW 731
R + + + S T Y++C +C KKV + + Y C CN YR IL I D
Sbjct: 580 RAQLVLVKNSGTLYYQSCT--NCLKKVTTELDS-YFCSSCNLTLKEPKYRYILNCKIADS 636
Query: 732 TNSVWVTLFQNEAESILGVTAQ------EVGESTEDHPALKKALFTQYIFRLRAKLEHYN 785
+ ++WV++ +A ++ + A + G+ E + AL K+ + ++ F+L +KLE +N
Sbjct: 637 SGNIWVSVGDQQANQLIDIPANLLKQLTDEGKEKEKNEALSKSAYKEFRFKLTSKLEEFN 696
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 148/328 (45%), Gaps = 37/328 (11%)
Query: 17 YEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVT 76
++ +F ++ +I D+V +P + FV L +I++ DV+ V ++ +
Sbjct: 400 FDYTFDQNSQIIEI--DDVPGIPLNTFNFVKLNSISQQKVGSIQDVVVVIKSSSGVKEFQ 457
Query: 77 GKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLS 136
K + + + + D S + +TL+G A+ + + K+ +++E+QG K+L
Sbjct: 458 QKNKDEKSTRIQLGVYDDSLQEIEITLYGHLAQQYPYQVGEIYMFKSLKINEYQGRKSLQ 517
Query: 137 LSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREI----- 191
+ + + + + E +LQ W EPVS+ + L+ E+
Sbjct: 518 NNYQTSIHFDKNQKEVKELQNWLQNFDGKLAEPVSK------------IKLISELINESN 565
Query: 192 ---QDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDCNKKVIDQNNGMYRCEKCN 247
DQ L + Y VR + + + S T Y++C +C KKV + + Y C CN
Sbjct: 566 KCELDQNLKI-----YSDVRAQLVLVKNSGTLYYQSCT--NCLKKVTTELDS-YFCSSCN 617
Query: 248 KEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ------EVGESTEDHPALK 301
YR IL I D + ++WV++ +A ++ + A + G+ E + AL
Sbjct: 618 LTLKEPKYRYILNCKIADSSGNIWVSVGDQQANQLIDIPANLLKQLTDEGKEKEKNEALS 677
Query: 302 KALFTQYIFRLRAKLEHYNGTKKIPDGV 329
K+ + ++ F+L +KLE +N K++ V
Sbjct: 678 KSAYKEFRFKLTSKLEEFNDVKRVKHAV 705
>gi|328726379|ref|XP_003248874.1| PREDICTED: replication factor A protein 1-like [Acyrthosiphon
pisum]
Length = 323
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 106/203 (52%), Gaps = 21/203 (10%)
Query: 455 WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYY 514
W+I RV K+ + N RG+GK F+ L+D++ EIRA F D+C+R ++++ VY
Sbjct: 17 WSITVRVLKKSNKISYQNERGTGKYFTTILIDKTTEIRAKAFGDDCDRLFLQLQENNVYN 76
Query: 515 ISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPD 574
I N ++ A+K++++ NDYE+ F +T +I ++ F + T ++
Sbjct: 77 IKNGKIQLADKEYNNSKNDYEIFFKETTIIIE------------QFGFTDIPTHPQLKTI 124
Query: 575 EN---------IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA 625
EN ID +GV I + + K + TY RDI L D++ SVT+ LW EA
Sbjct: 125 ENFWSMDINTLIDTIGVIIKIEKSKEIKKKNSNDTYKLRDIILKDKTGFSVTVVLWDTEA 184
Query: 626 ETFDASNKPVIAVKAARVSEFQG 648
F+A+ ++++ ++ F+
Sbjct: 185 INFNANEGDIMSIIDGQIIVFKN 207
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 84/180 (46%), Gaps = 21/180 (11%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN------ 59
A+K++++ NDYE+ F +T +I ++ F + T ++ EN
Sbjct: 85 ADKEYNNSKNDYEIFFKETTIIIE------------QFGFTDIPTHPQLKTIENFWSMDI 132
Query: 60 ---IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNK 116
ID +GV I + + K + TY RDI L D++ SVT+ LW EA F+A+
Sbjct: 133 NTLIDTIGVIIKIEKSKEIKKKNSNDTYKLRDIILKDKTGFSVTVVLWDTEAINFNANEG 192
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGG 176
++++ ++ F+ +S++ SS + +NP LQ W+ +SQ + G
Sbjct: 193 DIMSIIDGQIIVFKNVNKISVTGSSEILINPRWKVTEDLQSWYKEFEKKELLNLSQMSIG 252
>gi|300120592|emb|CBK20146.2| unnamed protein product [Blastocystis hominis]
Length = 362
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 68/100 (68%), Gaps = 2/100 (2%)
Query: 444 PIVSLSPY-QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECN 501
PI ++ PY N W I+ RVTNK+ IR +NNARG GKLFS+DLLD +SGEIR T F + +
Sbjct: 231 PISAIHPYLTNGWFIRCRVTNKSSIRTFNNARGEGKLFSVDLLDKDSGEIRVTFFTEMVD 290
Query: 502 RFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHS 541
F++ +E KVY N + A K+F+++NN+YE+ S
Sbjct: 291 TFYNYLEVGKVYDFCNFKIGFARKQFNTLNNEYELQCIRS 330
>gi|330798256|ref|XP_003287170.1| hypothetical protein DICPUDRAFT_94345 [Dictyostelium purpureum]
gi|325082822|gb|EGC36292.1| hypothetical protein DICPUDRAFT_94345 [Dictyostelium purpureum]
Length = 650
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 114/222 (51%), Gaps = 17/222 (7%)
Query: 432 PRQASAPVVQTH--PIVSLSPYQNKWTIKARVTNKTPIREWNNA-RGSGKLFSIDLLDES 488
P+ S V+++H I ++ + + TIKA V + P + WN SG+LFS+ L D +
Sbjct: 189 PQPDSESVLRSHVSDIADINEHSKEITIKAMVMERMPRKSWNKGGDNSGELFSVILQDST 248
Query: 489 GEIRATMFNDECN------RFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHST 542
G I+AT F+ + N ++M+EK KV+ I K ANK FS + +DYE++F ST
Sbjct: 249 GSIKATCFSSKSNPLPAFDDLYEMLEKKKVFKIQGFYAKKANKDFSRLPHDYEITFNAST 308
Query: 543 TVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYM 602
++P +E+ + Y F ++ ++ + DV+GV D T K N K +
Sbjct: 309 AIVPVDEEM-----DIFYDFRNIEDLSNVETGTTCDVIGVVSDCNLNQRFTSKNN-KQLV 362
Query: 603 KRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVS 644
K I + D + + + W EA D + +IA+K A+V+
Sbjct: 363 KSSININD-TTGIIEVIFWN-EAADIDVKDGDIIAIKNAKVN 402
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 84/370 (22%), Positives = 151/370 (40%), Gaps = 45/370 (12%)
Query: 1 MLAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI 60
A ANK FS + +DYE++F ST ++P +E+ + Y F ++ ++ +
Sbjct: 284 FYAKKANKDFSRLPHDYEITFNASTAIVPVDEEM-----DIFYDFRNIEDLSNVETGTTC 338
Query: 61 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIA 120
DV+GV D T K N K +K I + D + + + W EA D + +IA
Sbjct: 339 DVIGVVSDCNLNQRFTSKNN-KQLVKSSININD-TTGIIEVIFWN-EAADIDVKDGDIIA 395
Query: 121 VKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGG 180
+K A+V+ K SLS SS N I +L+ ++ + + +S+
Sbjct: 396 IKNAKVNTNFNNK--SLSASSYEINNNAIERTSQLRQLQASSSLYTGQSISKGNSAYTSI 453
Query: 181 AAGNLLLMREIQDQQLGM--------GDKADYCSVRGIIQV--FRGSNTT--------YK 222
++ +D + G K Y V + ++ + N + Y
Sbjct: 454 HVPIFVIKTLPEDSPIFFTKENNQNGGYKHQYRVVGHLSRIPPYVAPNDSGKKYLEWYYD 513
Query: 223 ACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESI 282
AC C K NN CE E N Y++ + D + S+ + + N E +
Sbjct: 514 ACTK--CKKSSASHNNQ--DCEDSAYEKN---YKMQF--KLSDESESIQIDVLGNTCERL 564
Query: 283 LGVTAQEV-----GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAML 337
LGV + G++ ++ + +F ++ + ++ Y K DGV++
Sbjct: 565 LGVNPNTMYEYVGGDNQDEINKIFNKVFGA-LYEVTIQVSKYRAVNK--DGVDVVYTRFN 621
Query: 338 ATQLNDIITD 347
ATQ+ ++ TD
Sbjct: 622 ATQIQEVSTD 631
>gi|328700730|ref|XP_003241367.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Acyrthosiphon pisum]
Length = 323
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 106/196 (54%), Gaps = 12/196 (6%)
Query: 455 WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYY 514
W+I ARV K+ + + G+GK F+ L+D++ EIRAT F ++ +R ++++ VY
Sbjct: 17 WSITARVLKKSDVLPF--KHGNGKYFTTILIDKTTEIRATAFGNDVDRLFSQLQENNVYN 74
Query: 515 ISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI-SP 573
I N +K A+K ++ NDYE+ F T + ++ + P LKTI ++ S
Sbjct: 75 IKNGEIKEADKAYNKSKNDYEIIFNGLTVIERSGVTDIPSHP-------QLKTIEKVFSM 127
Query: 574 DEN--IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS 631
D+N ID +GV I + + + T + R+I L D+S VT+TLW EA F+A+
Sbjct: 128 DKNTLIDTIGVIIKIEQSKKIKKINSNDTLILRNIILADKSGVRVTVTLWDTEATNFNAN 187
Query: 632 NKPVIAVKAARVSEFQ 647
+++ ++ +++
Sbjct: 188 EGDTMSIIGGKIIDYK 203
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 10/171 (5%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI-SPDEN--ID 61
A+K ++ NDYE+ F T + ++ + P LKTI ++ S D+N ID
Sbjct: 82 EADKAYNKSKNDYEIIFNGLTVIERSGVTDIPSHPQ-------LKTIEKVFSMDKNTLID 134
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAV 121
+GV I + + + T + R+I L D+S VT+TLW EA F+A+ +++
Sbjct: 135 TIGVIIKIEQSKKIKKINSNDTLILRNIILADKSGVRVTVTLWDTEATNFNANEGDTMSI 194
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQ 172
++ +++ K +S++ SS + +NP+ E LQ W+ + +SQ
Sbjct: 195 IGGKIIDYKNVKKISVTGSSKIEINPNWNETLHLQNWYKEFEKKKLLNLSQ 245
>gi|297806841|ref|XP_002871304.1| hypothetical protein ARALYDRAFT_908753 [Arabidopsis lyrata subsp.
lyrata]
gi|297317141|gb|EFH47563.1| hypothetical protein ARALYDRAFT_908753 [Arabidopsis lyrata subsp.
lyrata]
Length = 345
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 115/249 (46%), Gaps = 47/249 (18%)
Query: 86 KRDITLVDQSQASVTMTLW-----GKEAETFD-ASNKPVIAVKAARVSEFQGGKTLSLSM 139
KRDITL D+++ +V ++LW G E D A N PVIA+K+ +V +FQ
Sbjct: 113 KRDITLADETKKTVVVSLWNDLATGIGHELLDMADNHPVIAIKSLKVGDFQ--------- 163
Query: 140 SSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGA--------AGNLLLMREI 191
E KL+ W+ + + +S GMG A + + L
Sbjct: 164 -----------EATKLKSWYDAEG--KETSMSAIGSGMGSSANNGSRSMYSDRVFLSHIT 210
Query: 192 QDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDCNKKVIDQNNGMYRCEKCNKEF 250
+ LG +K + S R I + T Y+AC + CNKKV + + Y CE C K+
Sbjct: 211 SNPSLGE-EKPVFFSTRAYISFIKPDQTMWYRACKT--CNKKVTEAMDSGYWCEGCLKKD 267
Query: 251 NTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-------GESTEDHPALKKA 303
+ R I+ V + D T W + F +EAE I+G TA E+ GE E +K+A
Sbjct: 268 QECSLRYIMAVKVSDSTGETWFSAFNDEAEKIIGCTADELNNLKSEEGEVNEFQTKVKEA 327
Query: 304 LFTQYIFRL 312
++ ++FR+
Sbjct: 328 TWSSHLFRI 336
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 103/226 (45%), Gaps = 53/226 (23%)
Query: 603 KRDITLVDQSQASVTMTLW-----GKEAETFD-ASNKPVIAVKAARVSEFQGNLLLMR-- 654
KRDITL D+++ +V ++LW G E D A N PVIA+K+ +V +FQ L
Sbjct: 113 KRDITLADETKKTVVVSLWNDLATGIGHELLDMADNHPVIAIKSLKVGDFQEATKLKSWY 172
Query: 655 --EIQDQQL-----GMGDKAD----------------------------YCSVRGIIQVF 679
E ++ + GMG A+ + S R I
Sbjct: 173 DAEGKETSMSAIGSGMGSSANNGSRSMYSDRVFLSHITSNPSLGEEKPVFFSTRAYISFI 232
Query: 680 RGSNTT-YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVT 738
+ T Y+AC + CNKKV + + Y CE C K+ + R I+ V + D T W +
Sbjct: 233 KPDQTMWYRACKT--CNKKVTEAMDSGYWCEGCLKKDQECSLRYIMAVKVSDSTGETWFS 290
Query: 739 LFQNEAESILGVTAQEV-------GESTEDHPALKKALFTQYIFRL 777
F +EAE I+G TA E+ GE E +K+A ++ ++FR+
Sbjct: 291 AFNDEAEKIIGCTADELNNLKSEEGEVNEFQTKVKEATWSSHLFRI 336
>gi|222629943|gb|EEE62075.1| hypothetical protein OsJ_16859 [Oryza sativa Japonica Group]
Length = 207
Score = 97.1 bits (240), Expect = 3e-17, Method: Composition-based stats.
Identities = 49/102 (48%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDES-GEIRATMFNDECNR 502
PI +LSPY+ KWTIKARVT K+ ++ +N RG K F DLLDE GE+ A F+ +
Sbjct: 86 PIAALSPYKCKWTIKARVTAKSGLQHLSNDRGEAKFFDFDLLDEQGGEMLAKCFSSAAEK 145
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTV 544
F+ +IE DKVY IS +KPA + F N+DYE++ S +V
Sbjct: 146 FYGLIEVDKVYLISRGLVKPAQEPF---NSDYELALDASASV 184
>gi|224139098|ref|XP_002326767.1| predicted protein [Populus trichocarpa]
gi|222834089|gb|EEE72566.1| predicted protein [Populus trichocarpa]
Length = 122
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 4/120 (3%)
Query: 427 NNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD 486
N ++ R + P + PI +L+PY +WTIKAR K +R +NN RG K+ S DLLD
Sbjct: 4 NRGSVARNEAPPRIV--PITALNPYHGRWTIKARAMTKGELRHYNNTRGDSKVLSSDLLD 61
Query: 487 -ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVI 545
+ GEIRAT N ++F++ IE ++Y IS LKPA + F+ + +D E+ F ST+ I
Sbjct: 62 CDGGEIRATCSNQVADQFYNQIEAGRIYLISKGNLKPAQRNFNHLRHDLEI-FLESTSTI 120
>gi|328865102|gb|EGG13488.1| putative ssDNA-binding protein [Dictyostelium fasciculatum]
Length = 669
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 112/221 (50%), Gaps = 14/221 (6%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDES----GEIRATMFNDE- 499
I +LS +TI A V NK+ I+EW N SG+LFS++ D+S I+AT+F D
Sbjct: 207 IDALSEGMGSYTICAVVKNKSDIKEWKNVTSSGRLFSVEFADDSPSTCNTIKATVFGDPY 266
Query: 500 CNRFHDMIEKDKVYYISNC-TLKPANKKFSSINNDYEMSFTHSTTVIPCNEDE--VGNMP 556
C H +E K Y +S ++ ++KF++ + YE++ TT+ P + + +
Sbjct: 267 CASLHQQLEAGKTYMVSGSGGVRKNSQKFNNTKHQYELTLGRDTTITPVTDQSQVIKSAG 326
Query: 557 SVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQ----KTYMKRDITLVDQS 612
VK+ F P+ ++ + + +DVLG + +T K + K K IT+ D +
Sbjct: 327 VVKFQFTPINSLVSLGANMMVDVLGEVTSVSTPIDITTKATERAKSKVLPKWAITIRDNT 386
Query: 613 QASVTMTLWGKEAETF--DASNKPVIAVKAARVSEFQGNLL 651
+ + ++ WG + + + ++ +K A++++F G+ L
Sbjct: 387 NSGIEVSFWGDDVAKYLNQITVGMIVGIKNAKLTQFNGHSL 427
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/345 (22%), Positives = 148/345 (42%), Gaps = 33/345 (9%)
Query: 7 NKKFSSINNDYEMSFTHSTTVIPCNEDE--VGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
++KF++ + YE++ TT+ P + + + VK+ F P+ ++ + + +DVLG
Sbjct: 292 SQKFNNTKHQYELTLGRDTTITPVTDQSQVIKSAGVVKFQFTPINSLVSLGANMMVDVLG 351
Query: 65 VCIDAAELSSVTGKTNQ----KTYMKRDITLVDQSQASVTMTLWGKEAETF--DASNKPV 118
+ +T K + K K IT+ D + + + ++ WG + + + +
Sbjct: 352 EVTSVSTPIDITTKATERAKSKVLPKWAITIRDNTNSGIEVSFWGDDVAKYLNQITVGMI 411
Query: 119 IAVKAARVSEFQGGKTLSLSMSSVLSLNP-DIPECHKLQGWFSTQTNTRFEPVSQRTGGM 177
+ +K A++++F G +LS SS + L+P + + + W + + T ++QR+
Sbjct: 412 VGIKNAKLTQFN-GHSLSFGYSSEIVLDPRHLDQYEGFRQWIAHNSGTNCASLTQRSTFT 470
Query: 178 GGGAAGN--LLLMRE---IQDQQLGMGDKADYCSVRGII-------QVFRGSNTTYKACP 225
G + +L + E IQ + + + V G I ++ R + T C
Sbjct: 471 GNSTNKDAPVLTVAELLAIQTEPFDANNNPNQYVVHGTIRRGAFAKEISRDNGPTVSTCW 530
Query: 226 SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW-VTLFQNEAESILG 284
+ C G+ +CE T LP+ I D T ++ V LFQ+ A ILG
Sbjct: 531 YEGCAGCFKKVCGGLPKCEAPR-----MTNIWKLPIKIADDTGTLSNVDLFQSIALPILG 585
Query: 285 -VTAQEVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDG 328
++ E +ST L K L F + +++ T P G
Sbjct: 586 PISDYEHLDSTAFIAKLDKELG----FEAKVVVKYSQTTGNAPAG 626
>gi|321470011|gb|EFX80989.1| hypothetical protein DAPPUDRAFT_318086 [Daphnia pulex]
Length = 394
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 153/376 (40%), Gaps = 103/376 (27%)
Query: 433 RQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDE-SGEI 491
++ P+ H + + +QN W IK RVT KT NN K F ++L+D GEI
Sbjct: 22 QEKGFPISGLHYLKT--DHQN-WLIKVRVTKKTGKILVNNGISDVKYFKMNLIDLWKGEI 78
Query: 492 RATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDE 551
A F DEC+RF ++ E + C +D+
Sbjct: 79 EAMAFGDECDRFFEIFE------------------------------------VECLDDD 102
Query: 552 VGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ 611
++P+ ++ FVP+KTI+ + P +DV+ ++S ++ Q+ Y KR + L+D
Sbjct: 103 -DSIPNAEFYFVPIKTISTMKPGSFVDVIADASFVGKVSMGLSQSTQRHYTKRKLNLIDD 161
Query: 612 -SQASVTMTLWGK---EAETFDASNKPV--IAVKAARVSEFQGNLLL------------- 652
S S+ +T+W + D V IAV+ A++ E++G L L
Sbjct: 162 VSGDSIVLTVWNDLVNDLNQHDYFGDSVLRIAVRGAQIVEYKGKLELGTVSTTILKINEE 221
Query: 653 ------------------------------------MREIQDQQLGMGDKADYCSVRGII 676
+EI+D L + + SVR +I
Sbjct: 222 LKDIPGFFNIIGRRSQIAPIFEKSYESYAICKDITTFQEIKD--LKTPYRPERYSVRAMI 279
Query: 677 QVFRGSNTTYKACPSQDCNKKV---IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTN 733
+ ++ Y+ C + C KKV + NN Y C KC+ E F + LIL + D +
Sbjct: 280 SIIIKNSPFYEGCYFEGCRKKVNFNLLTNN--YYCSKCDAENPEFRWCLILKFQLNDISG 337
Query: 734 SVWVTLFQNEAESILG 749
S VT FQ E ++G
Sbjct: 338 SQRVTCFQEGFEDLVG 353
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 134/267 (50%), Gaps = 19/267 (7%)
Query: 28 IPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKR 87
+ C +D+ ++P+ ++ FVP+KTI+ + P +DV+ ++S ++ Q+ Y KR
Sbjct: 96 VECLDDD-DSIPNAEFYFVPIKTISTMKPGSFVDVIADASFVGKVSMGLSQSTQRHYTKR 154
Query: 88 DITLVDQ-SQASVTMTLWGK---EAETFDASNKPV--IAVKAARVSEFQGGKTLSLSMSS 141
+ L+D S S+ +T+W + D V IAV+ A++ E++G L ++
Sbjct: 155 KLNLIDDVSGDSIVLTVWNDLVNDLNQHDYFGDSVLRIAVRGAQIVEYKGKLELGTVSTT 214
Query: 142 VLSLNPDIPECHKLQGWFS-TQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGD 200
+L +N ++ + + G+F+ ++ P+ +++ ++ +EI+D L
Sbjct: 215 ILKINEELKD---IPGFFNIIGRRSQIAPIFEKSYE-SYAICKDITTFQEIKD--LKTPY 268
Query: 201 KADYCSVRGIIQVFRGSNTTYKACPSQDCNKKV---IDQNNGMYRCEKCNKEFNTFTYRL 257
+ + SVR +I + ++ Y+ C + C KKV + NN Y C KC+ E F + L
Sbjct: 269 RPERYSVRAMISIIIKNSPFYEGCYFEGCRKKVNFNLLTNN--YYCSKCDAENPEFRWCL 326
Query: 258 ILPVMIGDWTNSVWVTLFQNEAESILG 284
IL + D + S VT FQ E ++G
Sbjct: 327 ILKFQLNDISGSQRVTCFQEGFEDLVG 353
>gi|221486920|gb|EEE25166.1| replication factor, putative [Toxoplasma gondii GT1]
Length = 410
Score = 96.3 bits (238), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 95/172 (55%), Gaps = 14/172 (8%)
Query: 489 GEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
GEIRA+ F +H +E +VY S T+ ANKK++S++++YE+ F ++ +
Sbjct: 52 GEIRASFFGRVAATWHPRLEVGRVYQFSRGTIDTANKKYNSLSHEYEIKFDDRAVIVETD 111
Query: 549 EDEVGNMPSV-KYCFVPLKTIAEISPD----ENIDVLGVCIDAAELSSVTGKTNQKTYMK 603
+D PS+ F PLK +A ++ D +DV+G E SV + + +
Sbjct: 112 DD-----PSIPAQIFSPLK-LATLTDDSLVGSVVDVIGFVTSFCETHSVLARNTKDEVRR 165
Query: 604 RDITLVDQSQASVTMTLWGKEAETFDAS---NKPVIAVKAARVSEFQGNLLL 652
+++++VD S A+VT+TLW + A S +P++A+KA RVSE+ G + L
Sbjct: 166 KELSIVDDSGAAVTVTLWEQHATALKDSVLAERPLLAIKAVRVSEYAGKVSL 217
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 92/166 (55%), Gaps = 15/166 (9%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV-KYCFVPLKTIAEISPDE----NI 60
ANKK++S++++YE+ F ++ ++D PS+ F PLK +A ++ D +
Sbjct: 86 ANKKYNSLSHEYEIKFDDRAVIVETDDD-----PSIPAQIFSPLK-LATLTDDSLVGSVV 139
Query: 61 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS---NKP 117
DV+G E SV + + ++++++VD S A+VT+TLW + A S +P
Sbjct: 140 DVIGFVTSFCETHSVLARNTKDEVRRKELSIVDDSGAAVTVTLWEQHATALKDSVLAERP 199
Query: 118 VIAVKAARVSEFQGGKTLSLSMSSVLSLNPD-IPECHKLQGWFSTQ 162
++A+KA RVSE+ G +L+ + SV+ ++P + E L W+ +
Sbjct: 200 LLAIKAVRVSEYAGKVSLTSTSRSVILVDPHGLEEADLLAAWWEAE 245
>gi|221506608|gb|EEE32225.1| replication factor, putative [Toxoplasma gondii VEG]
Length = 410
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 95/172 (55%), Gaps = 14/172 (8%)
Query: 489 GEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
GEIRA+ F +H +E +VY S T+ ANKK++S++++YE+ F ++ +
Sbjct: 52 GEIRASFFGRVAATWHPRLEVGRVYQFSRGTIDTANKKYNSLSHEYEIKFDDRAVIVEMD 111
Query: 549 EDEVGNMPSV-KYCFVPLKTIAEISPD----ENIDVLGVCIDAAELSSVTGKTNQKTYMK 603
+D PS+ F PLK +A ++ D +DV+G E SV + + +
Sbjct: 112 DD-----PSIPAQIFSPLK-LATLTDDSLVGSVVDVIGFVTSFCETHSVLARNTKDEVRR 165
Query: 604 RDITLVDQSQASVTMTLWGKEAETFDAS---NKPVIAVKAARVSEFQGNLLL 652
+++++VD S A+VT+TLW + A S +P++A+KA RVSE+ G + L
Sbjct: 166 KELSIVDDSGAAVTVTLWEQHATALKDSVLAERPLLAIKAVRVSEYAGKVSL 217
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 92/166 (55%), Gaps = 15/166 (9%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV-KYCFVPLKTIAEISPDE----NI 60
ANKK++S++++YE+ F ++ ++D PS+ F PLK +A ++ D +
Sbjct: 86 ANKKYNSLSHEYEIKFDDRAVIVEMDDD-----PSIPAQIFSPLK-LATLTDDSLVGSVV 139
Query: 61 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS---NKP 117
DV+G E SV + + ++++++VD S A+VT+TLW + A S +P
Sbjct: 140 DVIGFVTSFCETHSVLARNTKDEVRRKELSIVDDSGAAVTVTLWEQHATALKDSVLAERP 199
Query: 118 VIAVKAARVSEFQGGKTLSLSMSSVLSLNPD-IPECHKLQGWFSTQ 162
++A+KA RVSE+ G +L+ + SV+ ++P + E L W+ +
Sbjct: 200 LLAIKAVRVSEYAGKVSLTSTSRSVILVDPHGLEEADLLAAWWEAE 245
>gi|237831865|ref|XP_002365230.1| hypothetical protein TGME49_060570 [Toxoplasma gondii ME49]
gi|211962894|gb|EEA98089.1| hypothetical protein TGME49_060570 [Toxoplasma gondii ME49]
Length = 410
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 95/172 (55%), Gaps = 14/172 (8%)
Query: 489 GEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
GEIRA+ F +H +E +VY S T+ ANKK++S++++YE+ F ++ +
Sbjct: 52 GEIRASFFGRVAATWHPRLEVGRVYQFSRGTIDTANKKYNSLSHEYEIKFDDRAVIVEMD 111
Query: 549 EDEVGNMPSV-KYCFVPLKTIAEISPD----ENIDVLGVCIDAAELSSVTGKTNQKTYMK 603
+D PS+ F PLK +A ++ D +DV+G E SV + + +
Sbjct: 112 DD-----PSIPAQIFSPLK-LATLTDDSLVGSVVDVIGFVTSFCETHSVLARNTKDEVRR 165
Query: 604 RDITLVDQSQASVTMTLWGKEAETFDAS---NKPVIAVKAARVSEFQGNLLL 652
+++++VD S A+VT+TLW + A S +P++A+KA RVSE+ G + L
Sbjct: 166 KELSIVDDSGAAVTVTLWEQHATALKDSVLAERPLLAIKAVRVSEYAGKVSL 217
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 92/166 (55%), Gaps = 15/166 (9%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV-KYCFVPLKTIAEISPDE----NI 60
ANKK++S++++YE+ F ++ ++D PS+ F PLK +A ++ D +
Sbjct: 86 ANKKYNSLSHEYEIKFDDRAVIVEMDDD-----PSIPAQIFSPLK-LATLTDDSLVGSVV 139
Query: 61 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS---NKP 117
DV+G E SV + + ++++++VD S A+VT+TLW + A S +P
Sbjct: 140 DVIGFVTSFCETHSVLARNTKDEVRRKELSIVDDSGAAVTVTLWEQHATALKDSVLAERP 199
Query: 118 VIAVKAARVSEFQGGKTLSLSMSSVLSLNPD-IPECHKLQGWFSTQ 162
++A+KA RVSE+ G +L+ + SV+ ++P + E L W+ +
Sbjct: 200 LLAIKAVRVSEYAGKVSLTSTSRSVILVDPHGLEEADLLAAWWEAE 245
>gi|401885438|gb|EJT49555.1| damaged DNA binding protein [Trichosporon asahii var. asahii CBS
2479]
Length = 182
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 80/141 (56%), Gaps = 6/141 (4%)
Query: 190 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 249
+ +D+QLGM DK DY SV I + +Y ACP + CNKK+ID+ +RCEKCN+
Sbjct: 15 QAKDEQLGMTDKTDYFSVCATILYIKQETFSYPACPGEGCNKKLIDE-GAEWRCEKCNRT 73
Query: 250 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFT--- 306
+ +R IL + + D T S W+T F E I+GV+A E+ + ++ + FT
Sbjct: 74 YPGPVHRYILQMNVIDHTGSFWITGFNEVGEQIMGVSANELFKLKQESDPEAEKYFTRAA 133
Query: 307 --QYIFRLRAKLEHYNGTKKI 325
++ F++ AK + +N T ++
Sbjct: 134 GREWDFKIMAKQDFFNDTARV 154
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 77/136 (56%), Gaps = 6/136 (4%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 714
+ +D+QLGM DK DY SV I + +Y ACP + CNKK+ID+ +RCEKCN+
Sbjct: 15 QAKDEQLGMTDKTDYFSVCATILYIKQETFSYPACPGEGCNKKLIDE-GAEWRCEKCNRT 73
Query: 715 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFT--- 771
+ +R IL + + D T S W+T F E I+GV+A E+ + ++ + FT
Sbjct: 74 YPGPVHRYILQMNVIDHTGSFWITGFNEVGEQIMGVSANELFKLKQESDPEAEKYFTRAA 133
Query: 772 --QYIFRLRAKLEHYN 785
++ F++ AK + +N
Sbjct: 134 GREWDFKIMAKQDFFN 149
>gi|302826559|ref|XP_002994724.1| hypothetical protein SELMODRAFT_432625 [Selaginella moellendorffii]
gi|300137041|gb|EFJ04211.1| hypothetical protein SELMODRAFT_432625 [Selaginella moellendorffii]
Length = 320
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 141/311 (45%), Gaps = 24/311 (7%)
Query: 33 DEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLV 92
DE P + + + + D ++V+G+ I ++ VT + + KR + L
Sbjct: 7 DEDATFPRIVLAKTSILSACQKERDSFVNVVGIVIWIGTIT-VTSRDSGAFVKKRTLCLG 65
Query: 93 DQSQASVTMTLWGKEAET--------FDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLS 144
D S SV + LW +AE D+ +P+I VK +VS++ G ++ +S++L
Sbjct: 66 DDSGHSVDLCLWDLKAEEEGSYIQERIDSGVQPIICVKGGKVSDYNGKSLSAIGVSTIL- 124
Query: 145 LNPDIPECHKLQGWFSTQTN-TRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKAD 203
+ P++ L+ W + N T F +S + + + EI + QL + + +
Sbjct: 125 IEPEMEAVADLREWMTLYYNVTNFIHLSTSSSRQ---TVSHTTTLSEISNMQLKVLESSP 181
Query: 204 YCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLIL 259
V ++ + Y AC ++ C KK +G + C CN E ++ L
Sbjct: 182 IYRVIATVKEMKTDEFYYNACINVVNARQCGKKTTRTADGWF-CSYCNIESANMEFKYAL 240
Query: 260 PVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-STEDHPALKKAL----FTQYIFRLRA 314
+ I D ++ VW FQ A+ I+G++A+E+ E++PA + Y F++R+
Sbjct: 241 KMCIEDSSSHVWAIAFQEAAQEIVGMSAKELATMRDENYPAFSLLIDGIRSKIYNFKIRS 300
Query: 315 KLEHYNGTKKI 325
KLE Y +K+
Sbjct: 301 KLEKYQDMEKL 311
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 117/301 (38%), Gaps = 68/301 (22%)
Query: 550 DEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLV 609
DE P + + + + D ++V+G+ I ++ VT + + KR + L
Sbjct: 7 DEDATFPRIVLAKTSILSACQKERDSFVNVVGIVIWIGTIT-VTSRDSGAFVKKRTLCLG 65
Query: 610 DQSQASVTMTLWGKEAET--------FDASNKPVIAVKAARVSEFQGNLL---------- 651
D S SV + LW +AE D+ +P+I VK +VS++ G L
Sbjct: 66 DDSGHSVDLCLWDLKAEEEGSYIQERIDSGVQPIICVKGGKVSDYNGKSLSAIGVSTILI 125
Query: 652 ---------------------------------------LMREIQDQQLGMGDKADYCSV 672
+ EI + QL + + + V
Sbjct: 126 EPEMEAVADLREWMTLYYNVTNFIHLSTSSSRQTVSHTTTLSEISNMQLKVLESSPIYRV 185
Query: 673 RGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMI 728
++ + Y AC ++ C KK +G + C CN E ++ L + I
Sbjct: 186 IATVKEMKTDEFYYNACINVVNARQCGKKTTRTADGWF-CSYCNIESANMEFKYALKMCI 244
Query: 729 GDWTNSVWVTLFQNEAESILGVTAQEVGE-STEDHPALKKAL----FTQYIFRLRAKLEH 783
D ++ VW FQ A+ I+G++A+E+ E++PA + Y F++R+KLE
Sbjct: 245 EDSSSHVWAIAFQEAAQEIVGMSAKELATMRDENYPAFSLLIDGIRSKIYNFKIRSKLEK 304
Query: 784 Y 784
Y
Sbjct: 305 Y 305
>gi|66359222|ref|XP_626789.1| replication protein A1 large subunit [Cryptosporidium parvum Iowa
II]
gi|46228369|gb|EAK89268.1| replication protein A1 large subunit [Cryptosporidium parvum Iowa
II]
Length = 484
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 93/373 (24%), Positives = 167/373 (44%), Gaps = 47/373 (12%)
Query: 6 ANKKFSSINNDYEMSFTHSTTV--IPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVL 63
+N KF+ +N YE++F+ V + ++D +G P KY F +K I EI +D++
Sbjct: 92 SNTKFNDTSNPYEINFSDRCFVRKVENDDDSIGKAP--KYVFTTVKDIREIPVPSIVDLI 149
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS--NKPVIAV 121
G+ + + V + N +R I++VD++ + +TLWG+ AE D PV+A+
Sbjct: 150 GIVRHFSPSTKVISRKNNDEVSRRTISVVDKTGFLINITLWGELAEVSDEKFLGNPVVAL 209
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGGG 180
K+ ++ E+QG + +L+ S + + D + +L+ W+ S ++ +FE +S +
Sbjct: 210 KSIQIREYQGRQGSTLNGRSNMEFSIDDGKMEELRDWYDSIGSSIKFESISNISSNESPN 269
Query: 181 ---AAGNLLLMREIQDQQLGMGD----------------KADYCSVRGIIQVFRGSNTTY 221
L R ++D + M D K +V + +G + TY
Sbjct: 270 NFRVNDKLYSGRTLKDIRNRMEDNEFSSTPSFQVIARISKIGSINVNQQVSGDKGGSLTY 329
Query: 222 KACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAES 281
ACP C KKV+ + CEKC++ T + + PV I D T S+ V F +
Sbjct: 330 DACPI--CKKKVLFSTS---YCEKCDESVVPET-KFLFPVTIEDHTCSLTVQCFHEIGST 383
Query: 282 ILGVTAQEVGESTEDHPALK-------KALFTQYIFRLRAKLEHYNGTKKI--------P 326
+ + + E + K + ++ Y +++ K E YN KK P
Sbjct: 384 FIKELSASACKEMEQNNDKKLNFILNLQCMWRHYNLKIQLKAEEYNNQKKTRAIIQSAEP 443
Query: 327 DGVNINSFAMLAT 339
+N S+ ML +
Sbjct: 444 IDLNQISYLMLES 456
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 112/213 (52%), Gaps = 14/213 (6%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNR 502
PI ++ + +IK R+ K+ ++ + + F +D++D+ + IR + +
Sbjct: 13 PIREVNVNRQTISIKGRIIQKSSLQI---LKSGLRFFHLDIIDKDNDVIRVKFWRQKAEE 69
Query: 503 FHDMIEKDKVYYISNCT---LKPANKKFSSINNDYEMSFTHSTTV--IPCNEDEVGNMPS 557
+H++++ VY I CT + +N KF+ +N YE++F+ V + ++D +G P
Sbjct: 70 YHNILQHGSVY-ILKCTGNDVVVSNTKFNDTSNPYEINFSDRCFVRKVENDDDSIGKAP- 127
Query: 558 VKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVT 617
KY F +K I EI +D++G+ + + V + N +R I++VD++ +
Sbjct: 128 -KYVFTTVKDIREIPVPSIVDLIGIVRHFSPSTKVISRKNNDEVSRRTISVVDKTGFLIN 186
Query: 618 MTLWGKEAETFDAS--NKPVIAVKAARVSEFQG 648
+TLWG+ AE D PV+A+K+ ++ E+QG
Sbjct: 187 ITLWGELAEVSDEKFLGNPVVALKSIQIREYQG 219
>gi|5326840|gb|AAD42062.1|AF132307_1 replication protein A large subunit [Cryptosporidium parvum]
Length = 473
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 93/373 (24%), Positives = 167/373 (44%), Gaps = 47/373 (12%)
Query: 6 ANKKFSSINNDYEMSFTHSTTV--IPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVL 63
+N KF+ +N YE++F+ V + ++D +G P KY F +K I EI +D++
Sbjct: 81 SNTKFNDTSNPYEINFSDRCFVRKVENDDDSIGKAP--KYVFTTVKDIREIPVPSIVDLI 138
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS--NKPVIAV 121
G+ + + V + N +R I++VD++ + +TLWG+ AE D PV+A+
Sbjct: 139 GIVRHFSPSTKVISRKNNDEVSRRTISVVDKTGFLINITLWGELAEVSDEKFLGNPVVAL 198
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGGG 180
K+ ++ E+QG + +L+ S + + D + +L+ W+ S ++ +FE +S +
Sbjct: 199 KSIQIREYQGRQGSTLNGRSNMEFSIDDGKMEELRDWYDSIGSSIKFESISNISSNESPN 258
Query: 181 ---AAGNLLLMREIQDQQLGMGD----------------KADYCSVRGIIQVFRGSNTTY 221
L R ++D + M D K +V + +G + TY
Sbjct: 259 NFRVNDKLYSGRTLKDIRNRMEDNEFSSTPSFQVIARISKIGSINVNQQVSGDKGGSLTY 318
Query: 222 KACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAES 281
ACP C KKV+ + CEKC++ T + + PV I D T S+ V F +
Sbjct: 319 DACPI--CKKKVLFSTS---YCEKCDESVVPET-KFLFPVTIEDHTCSLTVQCFHEIGST 372
Query: 282 ILGVTAQEVGESTEDHPALK-------KALFTQYIFRLRAKLEHYNGTKKI--------P 326
+ + + E + K + ++ Y +++ K E YN KK P
Sbjct: 373 FIKELSASACKEMEQNNDKKLNFILNLQCMWRHYNLKIQLKAEEYNNQKKTRAIIQSAEP 432
Query: 327 DGVNINSFAMLAT 339
+N S+ ML +
Sbjct: 433 IDLNQISYLMLES 445
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 112/213 (52%), Gaps = 14/213 (6%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNR 502
PI ++ + +IK R+ K+ ++ + + F +D++D+ + IR + +
Sbjct: 2 PIREVNVNRQTISIKGRIIQKSSLQI---LKSGLRFFHLDIIDKDNDVIRVKFWRXKAEE 58
Query: 503 FHDMIEKDKVYYISNCT---LKPANKKFSSINNDYEMSFTHSTTV--IPCNEDEVGNMPS 557
+H++++ VY I CT + +N KF+ +N YE++F+ V + ++D +G P
Sbjct: 59 YHNILQHGSVY-ILKCTGNDVVVSNTKFNDTSNPYEINFSDRCFVRKVENDDDSIGKAP- 116
Query: 558 VKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVT 617
KY F +K I EI +D++G+ + + V + N +R I++VD++ +
Sbjct: 117 -KYVFTTVKDIREIPVPSIVDLIGIVRHFSPSTKVISRKNNDEVSRRTISVVDKTGFLIN 175
Query: 618 MTLWGKEAETFDAS--NKPVIAVKAARVSEFQG 648
+TLWG+ AE D PV+A+K+ ++ E+QG
Sbjct: 176 ITLWGELAEVSDEKFLGNPVVALKSIQIREYQG 208
>gi|403222035|dbj|BAM40167.1| uncharacterized protein TOT_020000429 [Theileria orientalis strain
Shintoku]
Length = 463
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 114/211 (54%), Gaps = 12/211 (5%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNR 502
PI ++ Y N WTI +V +K+ +R + +G LF ID++D++G+ IRA + N+
Sbjct: 6 PIKDITTYINNWTILGKVVDKSKLR---SIKGDNSLFHIDIVDKNGDTIRAKFWGVAANK 62
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
++++++K VY S T+ +NKKF+++ + YE++F + + P +E N+ Y F
Sbjct: 63 WNEILQKGSVYTFSKGTVNLSNKKFNTLPHKYEITFNTDSLIEPSDEVNEINVER-NYDF 121
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELS--SVTGKTNQKTYMKRDITLVDQSQASVTMTL 620
V L+ I S D V +C A L+ SVT K +R + +VD + + +T+
Sbjct: 122 VSLRDIKSTSRDPPFVVDLLCF-AKSLTPISVTNTKYNKETKRRSLFVVDDTSYELEVTV 180
Query: 621 WGK--EAETFD-ASNKPVIAVKAARVSEFQG 648
WG E+ FD +KPVI + + E+ G
Sbjct: 181 WGDMTESSIFDNILDKPVI-ISQVTIKEWNG 210
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 154/343 (44%), Gaps = 38/343 (11%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
+NKKF+++ + YE++F + + P +E N+ Y FV L+ I S D V +
Sbjct: 83 SNKKFNTLPHKYEITFNTDSLIEPSDEVNEINVER-NYDFVSLRDIKSTSRDPPFVVDLL 141
Query: 66 CIDAAELS--SVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK--EAETFD-ASNKPVIA 120
C A L+ SVT K +R + +VD + + +T+WG E+ FD +KPVI
Sbjct: 142 CF-AKSLTPISVTNTKYNKETKRRSLFVVDDTSYELEVTVWGDMTESSIFDNILDKPVI- 199
Query: 121 VKAARVSEFQGGKTLSLSMSSVLSL-------NPDIPECHKLQGWF--STQTNTRFEPVS 171
+ + E+ GG+ SS + L N D L+ W+ + Q N F+ +
Sbjct: 200 ISQVTIKEWNGGRIGHTGYSSDIKLASANSVRNKD--RLATLESWYQQALQQNEGFKSMK 257
Query: 172 QRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT--YKACPSQDC 229
+ GG+ G + + + G G C +R + + + YKACP +C
Sbjct: 258 AQ-GGLSGRETYEFSTIENVVTK--GKGYFTFNCKLRKLFWKNKDGSARLWYKACP--NC 312
Query: 230 NKKVI-DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 288
+KK I +Q++ +YRC C+ R ++ D++ + T++ + + +LG++ +
Sbjct: 313 HKKAINEQDSNVYRCISCDDSIVQPEPRYSFSCVLIDFSGQIVTTVYGDMGKKLLGLSER 372
Query: 289 EVG-------ESTEDHPALKKALFTQYIFRLRAKLEHYNGTKK 324
E+ +T D L K L F+ R YNG +
Sbjct: 373 ELDGMDSEQLRNTLDFDVLHKDLKVSGFFKSRV----YNGESR 411
>gi|67615068|ref|XP_667409.1| replication protein A large subunit [Cryptosporidium hominis TU502]
gi|54658542|gb|EAL37178.1| replication protein A large subunit [Cryptosporidium hominis]
Length = 473
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 93/374 (24%), Positives = 168/374 (44%), Gaps = 49/374 (13%)
Query: 6 ANKKFSSINNDYEMSFTHSTTV--IPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVL 63
+N KF+ +N YE++F+ V + ++D +G P KY F +K I EI +D++
Sbjct: 81 SNTKFNDTSNPYEINFSDRCFVRKVENDDDSIGKAP--KYVFSTVKDIREIPVPSIVDLI 138
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS--NKPVIAV 121
G+ + + V + N +R I++VD++ + +TLWG+ AE D PV+A+
Sbjct: 139 GIVRHFSPSTKVISRKNNDEVSRRTISVVDKTGFLINITLWGELAEVSDEKFLGNPVVAL 198
Query: 122 KAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGGG 180
K+ ++ E+QG + +L+ S + + D + +L+ W+ S ++ +FE +S +
Sbjct: 199 KSIQIREYQGRQGSTLNGRSNMEFSIDDGKMEELRDWYDSIGSSIKFESISNISSNESPN 258
Query: 181 ---AAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFR-----------------GSNTT 220
L R ++D + M D ++ S + + R G + T
Sbjct: 259 NFRVNDKLYSGRTLKDIRNRMEDN-EFSSTQSFQVIARISKIGSINVNQQVSGDKGGSLT 317
Query: 221 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 280
Y ACP C KKV+ + CEKC++ T + + PV I D T S+ V F
Sbjct: 318 YDACPI--CKKKVLFSTS---YCEKCDESVVPET-KFLFPVTIEDHTCSLTVQCFHEIGS 371
Query: 281 SILGVTAQEVGESTEDHPALK-------KALFTQYIFRLRAKLEHYNGTKKI-------- 325
+ + + + E + K + ++ Y +++ K E YN KK
Sbjct: 372 TFIKELSASACKEMEQNNDKKLNFILNLQCMWRHYNLKIQLKAEEYNNQKKTRAIIQSAE 431
Query: 326 PDGVNINSFAMLAT 339
P +N S+ ML +
Sbjct: 432 PIDLNQISYLMLES 445
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 112/213 (52%), Gaps = 14/213 (6%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNR 502
PI ++ + +IK R+ K+ ++ + + F +D++D+ + IR + +
Sbjct: 2 PIREVNVNRQTISIKGRIIQKSSLQI---LKSGLRFFHLDIIDKDNDVIRVKFWRQKAEE 58
Query: 503 FHDMIEKDKVYYISNCT---LKPANKKFSSINNDYEMSFTHSTTV--IPCNEDEVGNMPS 557
+H++++ VY I CT + +N KF+ +N YE++F+ V + ++D +G P
Sbjct: 59 YHNILQHGSVY-ILKCTGNDVVVSNTKFNDTSNPYEINFSDRCFVRKVENDDDSIGKAP- 116
Query: 558 VKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVT 617
KY F +K I EI +D++G+ + + V + N +R I++VD++ +
Sbjct: 117 -KYVFSTVKDIREIPVPSIVDLIGIVRHFSPSTKVISRKNNDEVSRRTISVVDKTGFLIN 175
Query: 618 MTLWGKEAETFDAS--NKPVIAVKAARVSEFQG 648
+TLWG+ AE D PV+A+K+ ++ E+QG
Sbjct: 176 ITLWGELAEVSDEKFLGNPVVALKSIQIREYQG 208
>gi|403331791|gb|EJY64864.1| hypothetical protein OXYTRI_14991 [Oxytricha trifallax]
Length = 593
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 145/322 (45%), Gaps = 36/322 (11%)
Query: 349 TLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKIGNPQP---LNTNT 405
+ EFTI++I+ + + + R +L+I I ++ IGNP P L+
Sbjct: 18 VMKEFTIIEIRSFYIITLDG-----REILMISSCPKI-LNCQLTCMIGNPSPYKKLDMQQ 71
Query: 406 DNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNK-WTIKARVTNK 464
+ ++++P V V + + PI L+ + W IK RVT K
Sbjct: 72 ELVLSKESPIKFAEEEVKQVQALVGKNNKNKDKINYI-PIKDLNTASGEDWFIKGRVTKK 130
Query: 465 TPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPA 523
+G + I+L+D+ G +I T + D C++F D IE+ K+Y I + A
Sbjct: 131 GK----KIVYATGFMLKIELIDKEGTQIEGTFYKDSCDKFIDKIEEGKIYVIGKGQIANA 186
Query: 524 NKKFSSINNDYEMSFTHSTTV--IPCNEDEVGNMPS--------VKYCFVPLKTIAE-IS 572
NKKF+SI NDY + FT + V +DEV + S K+ F+ + + I
Sbjct: 187 NKKFTSIQNDYRIIFTEHSHVQEYVSMKDEVESKQSHQSEHFQRFKFNFLKISDVLSCIH 246
Query: 573 PDENIDVLGVCI------DAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE 626
+ IDV+G+ I D E+ GK N K + +I VD S S+ +TLWG E
Sbjct: 247 NLKQIDVIGINISKDPKRDDIEVKFDYGKNNVKGRLILEI--VDNSNESINVTLWG-ELS 303
Query: 627 TFDASNKPVIAVKAARVSEFQG 648
+ + ++ + R+S + G
Sbjct: 304 NLEFNEGDIVIINGGRISNYGG 325
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 133/321 (41%), Gaps = 48/321 (14%)
Query: 4 APANKKFSSINNDYEMSFTHSTTV--IPCNEDEVGNMPS--------VKYCFVPLKTIAE 53
A ANKKF+SI NDY + FT + V +DEV + S K+ F+ + +
Sbjct: 184 ANANKKFTSIQNDYRIIFTEHSHVQEYVSMKDEVESKQSHQSEHFQRFKFNFLKISDVLS 243
Query: 54 -ISPDENIDVLGVCI------DAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 106
I + IDV+G+ I D E+ GK N K + +I VD S S+ +TLWG
Sbjct: 244 CIHNLKQIDVIGINISKDPKRDDIEVKFDYGKNNVKGRLILEI--VDNSNESINVTLWG- 300
Query: 107 EAETFDASNKPVIAVKAARVSEFQGGKTLSL-SMSSVLSLNPDIPECHKLQGWFS----- 160
E + + ++ + R+S + GGK+++ S + +NP L+ + +
Sbjct: 301 ELSNLEFNEGDIVIINGGRISNY-GGKSINCGSEHCKIIINPSREVVSDLENYINVDKIN 359
Query: 161 ----TQTNTRFEPVSQRTGGMGG----GAAGNLLLMREIQDQQLG---------MGDKAD 203
T+ + + + R GM + L+ E+ G + +
Sbjct: 360 LVAKTKQQIQSQEQAVRAEGMSKLRDESQTFIVNLLEELNCSFEGTFNEGCETFLNPQGI 419
Query: 204 YCSVRGIIQVFRGSNT-TYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 262
+C I + + S++ Y CP C KKV D + C C K + + +
Sbjct: 420 FCLQGNITKFVQPSDSIAYLGCPI--CFKKVTDNRLTGFYCTNCLKIIKE-KHHYFIHAI 476
Query: 263 IGDWTNSVWVTLFQNEAESIL 283
D+T V + + +AE ++
Sbjct: 477 FQDFTGKVLIGFSREQAEQLM 497
>gi|391333842|ref|XP_003741319.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 269
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 97/196 (49%), Gaps = 4/196 (2%)
Query: 457 IKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYIS 516
I+ RV +K+P+REW A GKLF+ +L D SGEI + + I Y IS
Sbjct: 36 IEGRVISKSPLREWKKADAEGKLFTFNLTDNSGEISCIVSGELAEVLFPTISIGSCYEIS 95
Query: 517 NCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN 576
KP++ ++S+ ++ E+ + T + D +P + + I +I +++
Sbjct: 96 GFRPKPSHPQYSTTSHSCEIQLSKITRIKKIEGD---FLPKKPQSLIKISEILDIENNKS 152
Query: 577 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVI 636
+D++ + D + + + + K+++ LVD S +V++ LWG+ T D VI
Sbjct: 153 VDLIAIVYDVM-IPQMLACRDGQMREKQNVLLVDDSMRTVSLGLWGESIRTLDGKEGHVI 211
Query: 637 AVKAARVSEFQGNLLL 652
++AA V E+ G LL
Sbjct: 212 NIRAAAVKEYNGKKLL 227
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 71/139 (51%), Gaps = 4/139 (2%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
P++ ++S+ ++ E+ + T + D +P + + I +I ++++D++
Sbjct: 101 PSHPQYSTTSHSCEIQLSKITRIKKIEGD---FLPKKPQSLIKISEILDIENNKSVDLIA 157
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+ D + + + + K+++ LVD S +V++ LWG+ T D VI ++AA
Sbjct: 158 IVYDVM-IPQMLACRDGQMREKQNVLLVDDSMRTVSLGLWGESIRTLDGKEGHVINIRAA 216
Query: 125 RVSEFQGGKTLSLSMSSVL 143
V E+ G K LS S +S+L
Sbjct: 217 AVKEYNGKKLLSTSSASIL 235
>gi|302822669|ref|XP_002992991.1| hypothetical protein SELMODRAFT_431158 [Selaginella moellendorffii]
gi|300139191|gb|EFJ05937.1| hypothetical protein SELMODRAFT_431158 [Selaginella moellendorffii]
Length = 390
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 139/311 (44%), Gaps = 24/311 (7%)
Query: 33 DEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLV 92
DE P + + + + D +DV+G+ I ++ VT + + KR + L
Sbjct: 71 DEDATFPRIVLAKTSILSACQKERDSFVDVVGIVIWIGTIT-VTSRDSGTFVKKRTLCLG 129
Query: 93 DQSQASVTMTLWGKEAET--------FDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLS 144
D S SV + LW +AE D+ +P+I VK +VS++ G ++ +S++L
Sbjct: 130 DDSGHSVDLCLWDLKAEEEGSYIQERIDSGVQPIICVKGGKVSDYNGKSLSAIGVSTIL- 188
Query: 145 LNPDIPECHKLQGWFSTQTN-TRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKAD 203
+ P++ L+ W + N T F +S + L EI + QL + + +
Sbjct: 189 IEPEMEAVADLREWMTLYYNVTNFIHLSTSSSRQTVSCTTTL---SEISNMQLKVLESSP 245
Query: 204 YCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLIL 259
V ++ + Y AC ++ C KK +G + C CN E ++ L
Sbjct: 246 IYRVIATVKEMKTDEFYYNACINVLNARQCGKKTTRTADGWF-CSYCNIESANMEFKYAL 304
Query: 260 PVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-STEDHPALKKAL----FTQYIFRLRA 314
+ I D ++ VW FQ A+ I+G++A+E+ E++PA + Y F++ +
Sbjct: 305 KMCIEDSSSHVWAIAFQEAAQEIVGMSAKELATMRDENYPAFSLLIDGIRSKIYKFKIWS 364
Query: 315 KLEHYNGTKKI 325
KLE Y +K+
Sbjct: 365 KLEKYQDMEKL 375
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/374 (21%), Positives = 144/374 (38%), Gaps = 72/374 (19%)
Query: 480 FSIDLLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCT-LKPANKKFSSINNDYEMS 537
S D++D G EIR +D D I + VY S ++ +N+ ++ +E+
Sbjct: 1 MSFDVVDVQGTEIRIIGSDDCALVLSDKIVQGTVYSFSGSGGIRRSNQAYTPFEVTWEIQ 60
Query: 538 FTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTN 597
+ED P + + + + D +DV+G+ I ++ VT + +
Sbjct: 61 ANKGMEFTALDED--ATFPRIVLAKTSILSACQKERDSFVDVVGIVIWIGTIT-VTSRDS 117
Query: 598 QKTYMKRDITLVDQSQASVTMTLWGKEAET--------FDASNKPVIAVKAARVSEFQGN 649
KR + L D S SV + LW +AE D+ +P+I VK +VS++ G
Sbjct: 118 GTFVKKRTLCLGDDSGHSVDLCLWDLKAEEEGSYIQERIDSGVQPIICVKGGKVSDYNGK 177
Query: 650 LL-------------------------------------------------LMREIQDQQ 660
L + EI + Q
Sbjct: 178 SLSAIGVSTILIEPEMEAVADLREWMTLYYNVTNFIHLSTSSSRQTVSCTTTLSEISNMQ 237
Query: 661 LGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFN 716
L + + + V ++ + Y AC ++ C KK +G + C CN E
Sbjct: 238 LKVLESSPIYRVIATVKEMKTDEFYYNACINVLNARQCGKKTTRTADGWF-CSYCNIESA 296
Query: 717 TFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-STEDHPALKKAL----FT 771
++ L + I D ++ VW FQ A+ I+G++A+E+ E++PA +
Sbjct: 297 NMEFKYALKMCIEDSSSHVWAIAFQEAAQEIVGMSAKELATMRDENYPAFSLLIDGIRSK 356
Query: 772 QYIFRLRAKLEHYN 785
Y F++ +KLE Y
Sbjct: 357 IYKFKIWSKLEKYQ 370
>gi|195499029|ref|XP_002096774.1| GE24867 [Drosophila yakuba]
gi|194182875|gb|EDW96486.1| GE24867 [Drosophila yakuba]
Length = 189
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 9/159 (5%)
Query: 484 LLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTT 543
LLDESGEI +FN+ N F+ I+ VY S ++ A ++ +N Y++ +T
Sbjct: 3 LLDESGEITGVVFNNLVNVFYASIQTGLVYIFSGFEVRQAEQRLKVSDNPYQVFLLGNTV 62
Query: 544 VIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMK 603
V D + P KY F+PL ++ I E +D +G+C + EL N+ Y
Sbjct: 63 VELSASDRI---PREKYNFLPLSKVSSILDMEPVDAIGICSEVRELD------NRAGYFI 113
Query: 604 RDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 642
R+I LVD V + LW K+A F+ VI VK AR
Sbjct: 114 REILLVDHDYQCVMLNLWEKQAVNFEGKPDDVIVVKGAR 152
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 9/157 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A ++ +N Y++ +T V D + P KY F+PL ++ I E +D +G+
Sbjct: 42 AEQRLKVSDNPYQVFLLGNTVVELSASDRI---PREKYNFLPLSKVSSILDMEPVDAIGI 98
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + EL N+ Y R+I LVD V + LW K+A F+ VI VK AR
Sbjct: 99 CSEVRELD------NRAGYFIREILLVDHDYQCVMLNLWEKQAVNFEGKPDDVIVVKGAR 152
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ 162
L+ + + +NPD PE + W+ Q
Sbjct: 153 AQTHNNEIKLNAGWYTNVQINPDNPEATSMLEWYDNQ 189
>gi|71030734|ref|XP_765009.1| replication factor A protein [Theileria parva strain Muguga]
gi|68351965|gb|EAN32726.1| replication factor A protein, putative [Theileria parva]
Length = 466
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 115/212 (54%), Gaps = 14/212 (6%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNR 502
PI +++ Y + WTI ++ +K+P++ +G +D++D++G+ IRA + N+
Sbjct: 7 PIKNITTYTSNWTILGKIVDKSPLKA---LKGDNSFLFVDIVDKNGDTIRAKFWGVAANK 63
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK-YC 561
++D++EK VY S T+ +NKKF++ ++YE++FT + + P DE+ ++ + Y
Sbjct: 64 WNDLLEKGNVYTFSKGTVNLSNKKFNTTPHNYEITFTTDSKIDPS--DELNDIKVERNYE 121
Query: 562 FVPLKTIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
FV L+ I S D +D+L +S K N+ T KR + +VD + + +T
Sbjct: 122 FVTLRDIKSTSRDTPFVVDILCFVKSLTPVSVTNTKFNRDT-KKRLLYVVDDTSYELEVT 180
Query: 620 LWGKEAET---FDASNKPVIAVKAARVSEFQG 648
LWG+ E D +KPVI + + E+ G
Sbjct: 181 LWGQMTELPIFEDILDKPVI-LSQVTIKEWNG 211
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 137/315 (43%), Gaps = 28/315 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK-YCFVPLKTIAEISPDEN--IDV 62
+NKKF++ ++YE++FT + + P DE+ ++ + Y FV L+ I S D +D+
Sbjct: 84 SNKKFNTTPHNYEITFTTDSKIDPS--DELNDIKVERNYEFVTLRDIKSTSRDTPFVVDI 141
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET---FDASNKPVI 119
L +S K N+ T KR + +VD + + +TLWG+ E D +KPVI
Sbjct: 142 LCFVKSLTPVSVTNTKFNRDT-KKRLLYVVDDTSYELEVTLWGQMTELPIFEDILDKPVI 200
Query: 120 AVKAARVSEFQGGKTLSLSMSSVLSL-------NPDIPECHKLQGWFSTQTNTRFEPVSQ 172
+ + E+ GG+ S+++ + N D L+ W+ + +
Sbjct: 201 -LSQVTIKEWNGGRFGQTSLNTDIKFADFQSVRNKD--RLSTLEAWYQKAMSENESFKTM 257
Query: 173 RTGGMGGGAAGNLLLMREIQDQ-QLGMGDKADYCSVRGIIQVFRGSNTT--YKACPSQDC 229
+T M I D G C +R + + Y ACP+ C
Sbjct: 258 KTQTMSSSRES--YEFTTIDDALTRSKGYFIFICKLRKLFWKNKDGEMRLWYHACPT--C 313
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
KKV+++ ++RC C+ T R I+ + D++ ++ T++ + +LG + QE
Sbjct: 314 LKKVVEEQENVWRCITCDDSIVTPVLRYIVSCVFVDFSGQLFSTVYSESGKKLLGYSEQE 373
Query: 290 VGESTEDHPALKKAL 304
+ D LK L
Sbjct: 374 L--DAMDKEELKNTL 386
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
Y ACP+ C KKV+++ ++RC C+ T R I+ + D++ ++ T++ +
Sbjct: 307 YHACPT--CLKKVVEEQENVWRCITCDDSIVTPVLRYIVSCVFVDFSGQLFSTVYSESGK 364
Query: 746 SILGVTAQEVGESTEDHPALKKAL 769
+LG + QE+ D LK L
Sbjct: 365 KLLGYSEQEL--DAMDKEELKNTL 386
>gi|345484741|ref|XP_003425113.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Nasonia vitripennis]
Length = 167
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 80/128 (62%), Gaps = 5/128 (3%)
Query: 455 WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYY 514
WT KARVT+KT I+ + SG LF+ DL+D SG+IR +++ F + ++ +KVY
Sbjct: 40 WTFKARVTHKTDIKNY----ASGNLFNFDLIDSSGQIRCVVYHPLVEHFFEKVDVNKVYL 95
Query: 515 ISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPD 574
SN LK +NK ++ +N +E++ ++T+ C ++ V ++P KY F+ L +++ +
Sbjct: 96 FSNVLLKASNKTYNHYDNLFELNLYEASTITECTDNAV-DIPLNKYNFINLINLSDCKRN 154
Query: 575 ENIDVLGV 582
+ IDV+G+
Sbjct: 155 DIIDVIGI 162
>gi|387593453|gb|EIJ88477.1| hypothetical protein NEQG_01167 [Nematocida parisii ERTm3]
Length = 573
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 115/512 (22%), Positives = 223/512 (43%), Gaps = 96/512 (18%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
+L+++ D + + LS I++I ++SG+ +++ ++ I E+ E+ K
Sbjct: 64 LLSSKYADALANNQLSSGDIIKI-----GNMASGTYSSKPIIYIKEI------LEVQRK- 111
Query: 396 GNPQPLNTNTDNS--STQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQN 453
TD+S S +P + +G P++ + +V T I+ L+P+Q
Sbjct: 112 -------RKTDDSWGSIGASPCKRKMDVISGERGT---PKKEAKRLVTT--IIGLNPFQP 159
Query: 454 -KWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKV 512
W IKA+V +KT +RE+ +GK+FSI + D + F + + F+D I+ K
Sbjct: 160 ITWCIKAKVVSKTSVREYTKDGRAGKVFSIIVTDGDSKCNIIFFTEFVDAFYDKIQLYKT 219
Query: 513 YYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEIS 572
Y I+ TLK ANK ++ ++YE+ S T+ + +VK +P K I ++S
Sbjct: 220 YEITGGTLKLANKTYNEDIHEYEIFVDRSFTITQTAD-------AVKVVKMP-KAIVKVS 271
Query: 573 P-----DENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET 627
+E + +L V E+ +V K +Q KR + + D S + +W ++
Sbjct: 272 QLVNKINEVVSMLVVITSVGEIETVLRKKDQYAMKKRTLRVGDDSGETAPFIVW-EDTAA 330
Query: 628 FDASNKPVIAVKAARVSEFQG--NLLLMRE-------------------------IQ--- 657
+ S ++ ++ AR++E+Q + L R+ +Q
Sbjct: 331 MEFSMGDILLLEGARITEYQNTPQIGLSRDGIISFNPELPEVFKLKGWYNKNENILQTSS 390
Query: 658 -----------DQQLGMGD-KAD---YCSVRGIIQVFRGSNTTYKACPSQDCNKKV---I 699
++Q+ + D K D Y +++ + Y +C + +CNKKV I
Sbjct: 391 SVGTRKSVGGANRQVKIADVKTDCMEYATIKCTVLFISEKTLMYTSCIADNCNKKVEHKI 450
Query: 700 DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE------SILGVTAQ 753
D Y C KC+ + +Y + I D ++S+WV+ F + A S + +
Sbjct: 451 DSPEDYY-CNKCDATYARCSYSYGPSLSISDNSSSIWVSAFGDTASVLFNNLSAVDLNNL 509
Query: 754 EVGESTEDHPALKKALFTQYIFRLRAKLEHYN 785
V ++ + ++++ + I +R + YN
Sbjct: 510 SVNDNDKYKEITQQSIGAEMIINIRGRESTYN 541
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 150/330 (45%), Gaps = 31/330 (9%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISP-----DENI 60
ANK ++ ++YE+ S T+ + +VK +P K I ++S +E +
Sbjct: 230 ANKTYNEDIHEYEIFVDRSFTITQTAD-------AVKVVKMP-KAIVKVSQLVNKINEVV 281
Query: 61 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIA 120
+L V E+ +V K +Q KR + + D S + +W ++ + S ++
Sbjct: 282 SMLVVITSVGEIETVLRKKDQYAMKKRTLRVGDDSGETAPFIVW-EDTAAMEFSMGDILL 340
Query: 121 VKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGG 180
++ AR++E+Q + LS ++S NP++PE KL+GW++ N S T GG
Sbjct: 341 LEGARITEYQNTPQIGLSRDGIISFNPELPEVFKLKGWYNKNENILQTSSSVGTRKSVGG 400
Query: 181 AAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKV---IDQN 237
A + +I D + D +Y +++ + Y +C + +CNKKV ID
Sbjct: 401 ANRQV----KIADVKT---DCMEYATIKCTVLFISEKTLMYTSCIADNCNKKVEHKIDSP 453
Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE------SILGVTAQEVG 291
Y C KC+ + +Y + I D ++S+WV+ F + A S + + V
Sbjct: 454 EDYY-CNKCDATYARCSYSYGPSLSISDNSSSIWVSAFGDTASVLFNNLSAVDLNNLSVN 512
Query: 292 ESTEDHPALKKALFTQYIFRLRAKLEHYNG 321
++ + ++++ + I +R + YNG
Sbjct: 513 DNDKYKEITQQSIGAEMIINIRGRESTYNG 542
>gi|387597110|gb|EIJ94730.1| hypothetical protein NEPG_00254 [Nematocida parisii ERTm1]
Length = 573
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 115/512 (22%), Positives = 223/512 (43%), Gaps = 96/512 (18%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
+L+++ D + + LS I++I ++SG+ +++ ++ I E+ E+ K
Sbjct: 64 LLSSKYADALANNQLSSGDIIKI-----GNMASGTYSSKPIIYIKEI------LEVQRK- 111
Query: 396 GNPQPLNTNTDNS--STQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQN 453
TD+S S +P + +G P++ + +V T I+ L+P+Q
Sbjct: 112 -------RKTDDSWGSIGASPCKRKMDVISGERGT---PKKEAKRLVTT--IIGLNPFQP 159
Query: 454 -KWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKV 512
W IKA+V +KT +RE+ +GK+FSI + D + F + + F+D I+ K
Sbjct: 160 ITWCIKAKVVSKTSVREYTKDGRAGKVFSIIVTDGDSKCNIIFFTEFVDAFYDKIQLYKT 219
Query: 513 YYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEIS 572
Y I+ TLK ANK ++ ++YE+ S T+ + +VK +P K I ++S
Sbjct: 220 YEITGGTLKLANKTYNEDIHEYEIFVDRSFTITQTAD-------AVKVVKMP-KAIVKVS 271
Query: 573 P-----DENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET 627
+E + +L V E+ +V K +Q KR + + D S + +W ++
Sbjct: 272 QLVNKINEVVSMLVVITSVGEIETVLRKKDQYAMKKRTLRVGDDSGETAPFIVW-EDTAA 330
Query: 628 FDASNKPVIAVKAARVSEFQG--NLLLMRE-------------------------IQ--- 657
+ S ++ ++ AR++E+Q + L R+ +Q
Sbjct: 331 MEFSMGDILLLEGARITEYQNTPQIGLSRDGIISFNPELPEVFKLKGWYNKNENILQTSS 390
Query: 658 -----------DQQLGMGD-KAD---YCSVRGIIQVFRGSNTTYKACPSQDCNKKV---I 699
++Q+ + D K D Y +++ + Y +C + +CNKKV I
Sbjct: 391 SVGTRKSVGGANRQVKIADVKTDCMEYATIKCTVLFISEKTLMYTSCIADNCNKKVEHKI 450
Query: 700 DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE------SILGVTAQ 753
D Y C KC+ + +Y + I D ++S+WV+ F + A S + +
Sbjct: 451 DSPEDYY-CNKCDATYARCSYSYGPSLSISDNSSSIWVSAFGDTASVLFNNLSAVDLNNL 509
Query: 754 EVGESTEDHPALKKALFTQYIFRLRAKLEHYN 785
V ++ + ++++ + I +R + YN
Sbjct: 510 SVNDNDKYKEITQQSIGAEMIISIRGRESTYN 541
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 150/330 (45%), Gaps = 31/330 (9%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISP-----DENI 60
ANK ++ ++YE+ S T+ + +VK +P K I ++S +E +
Sbjct: 230 ANKTYNEDIHEYEIFVDRSFTITQTAD-------AVKVVKMP-KAIVKVSQLVNKINEVV 281
Query: 61 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIA 120
+L V E+ +V K +Q KR + + D S + +W ++ + S ++
Sbjct: 282 SMLVVITSVGEIETVLRKKDQYAMKKRTLRVGDDSGETAPFIVW-EDTAAMEFSMGDILL 340
Query: 121 VKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGG 180
++ AR++E+Q + LS ++S NP++PE KL+GW++ N S T GG
Sbjct: 341 LEGARITEYQNTPQIGLSRDGIISFNPELPEVFKLKGWYNKNENILQTSSSVGTRKSVGG 400
Query: 181 AAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKV---IDQN 237
A + +I D + D +Y +++ + Y +C + +CNKKV ID
Sbjct: 401 ANRQV----KIADVKT---DCMEYATIKCTVLFISEKTLMYTSCIADNCNKKVEHKIDSP 453
Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE------SILGVTAQEVG 291
Y C KC+ + +Y + I D ++S+WV+ F + A S + + V
Sbjct: 454 EDYY-CNKCDATYARCSYSYGPSLSISDNSSSIWVSAFGDTASVLFNNLSAVDLNNLSVN 512
Query: 292 ESTEDHPALKKALFTQYIFRLRAKLEHYNG 321
++ + ++++ + I +R + YNG
Sbjct: 513 DNDKYKEITQQSIGAEMIISIRGRESTYNG 542
>gi|302795292|ref|XP_002979409.1| hypothetical protein SELMODRAFT_419097 [Selaginella moellendorffii]
gi|300152657|gb|EFJ19298.1| hypothetical protein SELMODRAFT_419097 [Selaginella moellendorffii]
Length = 389
Score = 89.4 bits (220), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 139/311 (44%), Gaps = 25/311 (8%)
Query: 33 DEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLV 92
DE P + + + + D +DV+G+ I ++ VT + + KR + L
Sbjct: 71 DEDATFPRIVLAKTSILSACQKERDSFVDVVGIVIWIGTIT-VTSRDSGTFVKKRTLCLG 129
Query: 93 DQSQASVTMTLWGKEAET--------FDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLS 144
D S SV + LW +AE D+ +P+I VK +VS++ G ++ +S++L
Sbjct: 130 DDSGHSVDLCLWDLKAEEEGSYIQERIDSGVQPIICVKGGKVSDYNGKSLSAIGVSTIL- 188
Query: 145 LNPDIPECHKLQGWFSTQTN-TRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKAD 203
+ P++ L+ W + N T F +S + L EI + QL + + +
Sbjct: 189 IEPEMEAVADLREWMTLYYNVTNFIHLSTSSSRQTVSCTTTL---SEISNMQLKVLESSP 245
Query: 204 YCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLIL 259
V ++ + Y AC ++ C KK +G + C CN E ++ L
Sbjct: 246 IYRVIATVKEMKTDEFYYNACINVVNARQCGKKTTRTADGWF-CSYCNIESANMEFKYAL 304
Query: 260 PVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-STEDHPALKKAL----FTQYIFRLRA 314
+ I D ++ VW FQ A+ I+G++A+E+ E++PA + Y F++ +
Sbjct: 305 KMCIED-SSHVWAIAFQEAAQEIVGMSAKELATMRDENYPAFSLLIDGIRSKIYKFKIWS 363
Query: 315 KLEHYNGTKKI 325
KLE Y +K+
Sbjct: 364 KLEKYQDMEKL 374
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 82/374 (21%), Positives = 144/374 (38%), Gaps = 73/374 (19%)
Query: 480 FSIDLLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCT-LKPANKKFSSINNDYEMS 537
S D++D G EIR +D D I + VY S ++ +N+ ++ +E+
Sbjct: 1 MSFDVVDVQGTEIRIIGSDDCALVLSDKIVQGIVYSFSGSGGIRRSNQAYTPFEVTWEIQ 60
Query: 538 FTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTN 597
+ED P + + + + D +DV+G+ I ++ VT + +
Sbjct: 61 ANKGMEFTALDED--ATFPRIVLAKTSILSACQKERDSFVDVVGIVIWIGTIT-VTSRDS 117
Query: 598 QKTYMKRDITLVDQSQASVTMTLWGKEAET--------FDASNKPVIAVKAARVSEFQGN 649
KR + L D S SV + LW +AE D+ +P+I VK +VS++ G
Sbjct: 118 GTFVKKRTLCLGDDSGHSVDLCLWDLKAEEEGSYIQERIDSGVQPIICVKGGKVSDYNGK 177
Query: 650 LL-------------------------------------------------LMREIQDQQ 660
L + EI + Q
Sbjct: 178 SLSAIGVSTILIEPEMEAVADLREWMTLYYNVTNFIHLSTSSSRQTVSCTTTLSEISNMQ 237
Query: 661 LGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFN 716
L + + + V ++ + Y AC ++ C KK +G + C CN E
Sbjct: 238 LKVLESSPIYRVIATVKEMKTDEFYYNACINVVNARQCGKKTTRTADGWF-CSYCNIESA 296
Query: 717 TFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-STEDHPALKKAL----FT 771
++ L + I D ++ VW FQ A+ I+G++A+E+ E++PA +
Sbjct: 297 NMEFKYALKMCIED-SSHVWAIAFQEAAQEIVGMSAKELATMRDENYPAFSLLIDGIRSK 355
Query: 772 QYIFRLRAKLEHYN 785
Y F++ +KLE Y
Sbjct: 356 IYKFKIWSKLEKYQ 369
>gi|356995354|emb|CCD35049.1| replication protein A1, partial [Apatura iris xanthina]
Length = 76
Score = 89.0 bits (219), Expect = 9e-15, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 49/70 (70%)
Query: 190 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 249
E +++LG GDK D+ S+ G++ N YKACP + CNKK++DQ NG +RCEKCN+E
Sbjct: 7 EADERKLGSGDKGDFFSLLGVLTFTFADNVVYKACPQEQCNKKLVDQENGQFRCEKCNRE 66
Query: 250 FNTFTYRLIL 259
+ F YRL+L
Sbjct: 67 YPNFKYRLLL 76
Score = 89.0 bits (219), Expect = 9e-15, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 49/70 (70%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 714
E +++LG GDK D+ S+ G++ N YKACP + CNKK++DQ NG +RCEKCN+E
Sbjct: 7 EADERKLGSGDKGDFFSLLGVLTFTFADNVVYKACPQEQCNKKLVDQENGQFRCEKCNRE 66
Query: 715 FNTFTYRLIL 724
+ F YRL+L
Sbjct: 67 YPNFKYRLLL 76
>gi|449692091|ref|XP_002168845.2| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Hydra magnipapillata]
Length = 83
Score = 88.2 bits (217), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/82 (47%), Positives = 55/82 (67%), Gaps = 4/82 (4%)
Query: 178 GGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQN 237
GGG L +I+D+ LGMG+K DY +VR + +R N Y+ACP DCNKKVI ++
Sbjct: 2 GGGKYKTL---GQIKDEGLGMGEKPDYFNVRAFVVFYRKENCMYQACPGADCNKKVI-ED 57
Query: 238 NGMYRCEKCNKEFNTFTYRLIL 259
NG +RCEKC++ + F YR++L
Sbjct: 58 NGQFRCEKCDRTYPDFKYRMVL 79
Score = 87.8 bits (216), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/77 (46%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 648 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 707
G + +I+D+ LGMG+K DY +VR + +R N Y+ACP DCNKKVI ++NG +R
Sbjct: 4 GKYKTLGQIKDEGLGMGEKPDYFNVRAFVVFYRKENCMYQACPGADCNKKVI-EDNGQFR 62
Query: 708 CEKCNKEFNTFTYRLIL 724
CEKC++ + F YR++L
Sbjct: 63 CEKCDRTYPDFKYRMVL 79
>gi|348685631|gb|EGZ25446.1| hypothetical protein PHYSODRAFT_479463 [Phytophthora sojae]
Length = 263
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 111/242 (45%), Gaps = 31/242 (12%)
Query: 436 SAPVVQTHPIVSLSP-YQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRA 493
+ P + I +P + W+ R+ ++P+R + + R SG+LF + + D + +R
Sbjct: 13 TPPPLPVFTIADFNPEIRAPWSFIGRILARSPVRTFKSWRASGRLFRVHVTDRDDATLRV 72
Query: 494 TMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVG 553
T+FN+ RF D++ V SN + AN F+ ++ E+SF + +
Sbjct: 73 TVFNEGAERFFDVLSPGAVCSFSNGRITTANSVFAPPSSPIELSFGGDANIHRVTDGP-- 130
Query: 554 NMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ 613
+ P + ++ L + +P V G+ +D L +T + +KT +KR+ LVD S
Sbjct: 131 DYPEPAFAYIRLADLPAATP----TVSGIVVDVGPLRDITTRAGRKT-LKREFLLVDDSN 185
Query: 614 ASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVR 673
V T WG++A+ S QG+ +L IQ+ Q+ +DY ++R
Sbjct: 186 VDVVCTAWGQDADELQDS--------------LQGHPIL---IQNGQI-----SDYMNIR 223
Query: 674 GI 675
+
Sbjct: 224 SV 225
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN F+ ++ E+SF + + + P + ++ L + +P V G+
Sbjct: 102 ANSVFAPPSSPIELSFGGDANIHRVTDGP--DYPEPAFAYIRLADLPAATPT----VSGI 155
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF-DASNKPVIAVKAA 124
+D L +T + +KT +KR+ LVD S V T WG++A+ D+ I ++
Sbjct: 156 VVDVGPLRDITTRAGRKT-LKREFLLVDDSNVDVVCTAWGQDADELQDSLQGHPILIQNG 214
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFS 160
++S++ +++ + + S L +P LQ WF+
Sbjct: 215 QISDYMNIRSVDIGVRSTLLHHPATSRSADLQRWFA 250
>gi|84995108|ref|XP_952276.1| replication factor A-related protein [Theileria annulata strain
Ankara]
gi|65302437|emb|CAI74544.1| replication factor A-related protein, putative [Theileria annulata]
Length = 466
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 113/211 (53%), Gaps = 12/211 (5%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNR 502
PI +++ Y + WTI +V K+P++ + +G +D++D++G+ IRA + N+
Sbjct: 7 PIKNITTYTSNWTILGKVVEKSPLK---SLKGDNAFLFVDIVDKNGDTIRAKFWGLAANK 63
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
++D++EK VY S ++ +NKKF++ ++YE++F + P +E + N+ Y F
Sbjct: 64 WNDLLEKGNVYTFSKGSVNLSNKKFNNTPHNYEITFGTDGVIDPSDELDDINVER-NYEF 122
Query: 563 VPLKTIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTL 620
V L+ I S D +D+L +S K N+ T KR + +VD + + +TL
Sbjct: 123 VTLRDIKSTSRDTPFVVDILCFVKSLTPVSVTNTKFNRDT-KKRLLYVVDDTSYELEVTL 181
Query: 621 WGKEAE--TF-DASNKPVIAVKAARVSEFQG 648
WG+ E F D +KPVI + + E+ G
Sbjct: 182 WGQMTELPIFDDILDKPVI-LSQVTIKEWNG 211
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/319 (25%), Positives = 144/319 (45%), Gaps = 36/319 (11%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN--IDVL 63
+NKKF++ ++YE++F + P +E + N+ Y FV L+ I S D +D+L
Sbjct: 84 SNKKFNNTPHNYEITFGTDGVIDPSDELDDINVER-NYEFVTLRDIKSTSRDTPFVVDIL 142
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE--TFD-ASNKPVIA 120
+S K N+ T KR + +VD + + +TLWG+ E FD +KPVI
Sbjct: 143 CFVKSLTPVSVTNTKFNRDT-KKRLLYVVDDTSYELEVTLWGQMTELPIFDDILDKPVI- 200
Query: 121 VKAARVSEFQGGKTLSLSMSSVLSL-------NPDIPECHKLQGWF--STQTNTRFEPVS 171
+ + E+ GG+ S+++ + L N D L+ W+ + N F+ +
Sbjct: 201 LSQVTIKEWNGGRFGQTSLTTDIKLADFQSVRNKD--RLSTLEAWYQKAMSENETFKTMK 258
Query: 172 QRTGGMGGGAAGNLLLMREIQDQQLGMGDKADY----CSVRGIIQVFRGSNTT--YKACP 225
+T ++ + I+D M Y C +R + + + Y +CP
Sbjct: 259 TQTMS----SSRDSYEFSTIED---AMTRAKGYFTFNCKLRKLFWKNKDGDMRLWYHSCP 311
Query: 226 SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGV 285
+C KKV+++ ++RC C+ T R I+ + D++ + T++ + + +LG
Sbjct: 312 --NCYKKVVEEQENVWRCITCDDSIVTPVLRYIVTCVFVDFSGQMVSTVYSDNGKKLLGY 369
Query: 286 TAQEVGESTEDHPALKKAL 304
T QE+ D LK L
Sbjct: 370 TEQEL--DAMDKEQLKNTL 386
Score = 43.9 bits (102), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
Y +CP +C KKV+++ ++RC C+ T R I+ + D++ + T++ + +
Sbjct: 307 YHSCP--NCYKKVVEEQENVWRCITCDDSIVTPVLRYIVTCVFVDFSGQMVSTVYSDNGK 364
Query: 746 SILGVTAQEVGESTEDHPALKKAL 769
+LG T QE+ D LK L
Sbjct: 365 KLLGYTEQEL--DAMDKEQLKNTL 386
>gi|391335288|ref|XP_003742027.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 384
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 103/205 (50%), Gaps = 4/205 (1%)
Query: 446 VSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHD 505
+ + P Q K+ RV +K I W+ +GK+FS + D S +I+ FND C +F +
Sbjct: 55 LKMGPSQKKYQF--RVVSKKEIHTWSKGSSNGKVFSCQVADASTDIQIVAFNDNCLQFSE 112
Query: 506 MIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPL 565
++++ + Y I + AN F++ ++ E+ T + N + + +V
Sbjct: 113 ILQEHQEYDIEGFACRQANPIFNTTSSKLEIVLNKGTKIRALNRATL-RIAEKSPNYVSF 171
Query: 566 KTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA 625
+ + ++ +DV GV I + + T K + K +KR++ +VD+ + +T+ LW +
Sbjct: 172 SELQSMKENDIVDVCGVIIHVSPVEEFTRKRDGKPIVKRELRIVDEDRKILTINLWNERT 231
Query: 626 ETFDASNKPVIAVKAARVSEFQGNL 650
T + K ++V+ R++ F+GNL
Sbjct: 232 NT-ELVEKVAVSVRHGRINIFRGNL 255
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 89/212 (41%), Gaps = 31/212 (14%)
Query: 45 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 104
+V + + ++ +DV GV I + + T K + K +KR++ +VD+ + +T+ LW
Sbjct: 168 YVSFSELQSMKENDIVDVCGVIIHVSPVEEFTRKRDGKPIVKRELRIVDEDRKILTINLW 227
Query: 105 GKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTN 164
+ T + K ++V+ R++ F+G LS + S ++ D+ N
Sbjct: 228 NERTNT-ELVEKVAVSVRHGRINIFRGN--LSSNCESASKIDSDL-------------GN 271
Query: 165 TRFEPVSQRTGGMGGGAAG------NLLLMREIQDQQLGMGDKADYCSV---------RG 209
R +SQ G A+G N LM+ + + K + SV R
Sbjct: 272 ERLLKLSQWWEKHGLEASGDNSSNRNSELMKTVNFEAAQREVKIEAGSVKSPPFVFWTRA 331
Query: 210 IIQVFRGSNTTYKACPSQDCNKKVIDQNNGMY 241
I ++ Y+AC +C KKV Q Y
Sbjct: 332 RIATVAQNSLMYRACAKTNCLKKVESQPGETY 363
>gi|449705024|gb|EMD45158.1| replication protein 70 kDa DNAbinding subunit, putative [Entamoeba
histolytica KU27]
Length = 588
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 144/325 (44%), Gaps = 37/325 (11%)
Query: 26 TVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYM 85
T+I + DEV + S+ VP+ + E D D+ +D +T +
Sbjct: 245 TIIQKSSDEVPMISSI----VPIADLVESPVDATYDICAFLVDKG-----PEQTYKNEKA 295
Query: 86 KRDITLVDQSQASVTMTLWGKEAE-TFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLS 144
K +T +DQS +V + W ++ + T D N V + + ++ EF+ KTL+++ ++ +
Sbjct: 296 KVTLTFMDQSSYAVEVDFWNEDIDKTKDMENGVVYVLTSLKLKEFKY-KTLTVTKATKIL 354
Query: 145 LNPDIP---ECHKLQGWFSTQTNTRFEPVS-------QRTGGMGGG---AAGNLLLMREI 191
N DI E + + T VS + T G A L +R++
Sbjct: 355 SNTDIEQYDEASLVNKFIQEHTTPEGITVSDLRYLANETTVEFKSGDIRIADQLYCLRKL 414
Query: 192 QDQQLGMGDKADYCSVRGIIQVFRGSNT-TYKACPSQDCNKKVIDQNNGMYRCEKCNKEF 250
+++ + +V G +F+ N Y +CP DC KK+++ G CEKC K+
Sbjct: 415 EEKTSETSEDVK-ANVYGYFTMFKVDNGFCYLSCP--DCKKKIVE---GSTFCEKCQKDI 468
Query: 251 NTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYI- 309
R I+ I D T+S+WVT+F E + I+G +A E+ E E L + LF Q
Sbjct: 469 QPMR-RFIVRASIADSTSSIWVTIFDEEMKKIIGKSADEMYEINEQDSELFENLFKQLTF 527
Query: 310 ----FRLRAKLEHYNGTKKIPDGVN 330
F L K + YNG + VN
Sbjct: 528 IECRFHLICKKDEYNGETRTRFTVN 552
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 106/235 (45%), Gaps = 22/235 (9%)
Query: 425 VHNNVAIPRQASAPVV----QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLF 480
V V + Q +AP + P L+ + +K IK RV +K ++ G LF
Sbjct: 125 VRTGVPVSHQQAAPADLSKGKITPFSLLTTFGSKLIIKGRVVSKNDKFKY----AKGNLF 180
Query: 481 SIDLLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKK--FSSINNDYEMS 537
S L D+ G EI+AT FND C+ D I+ + YYI+ K +N K S+ D +M
Sbjct: 181 SFVLQDKDGAEIKATCFNDVCDEKFDQIKVGETYYITKADYKQSNGKGYRSAKMIDLDM- 239
Query: 538 FTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTN 597
T+I + DEV + S+ VP+ + E D D+ +D +T
Sbjct: 240 IIGKYTIIQKSSDEVPMISSI----VPIADLVESPVDATYDICAFLVDKG-----PEQTY 290
Query: 598 QKTYMKRDITLVDQSQASVTMTLWGKEAE-TFDASNKPVIAVKAARVSEFQGNLL 651
+ K +T +DQS +V + W ++ + T D N V + + ++ EF+ L
Sbjct: 291 KNEKAKVTLTFMDQSSYAVEVDFWNEDIDKTKDMENGVVYVLTSLKLKEFKYKTL 345
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 60/120 (50%), Gaps = 12/120 (10%)
Query: 672 VRGIIQVFRGSNT-TYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGD 730
V G +F+ N Y +CP DC KK+++ G CEKC K+ R I+ I D
Sbjct: 429 VYGYFTMFKVDNGFCYLSCP--DCKKKIVE---GSTFCEKCQKDIQPMR-RFIVRASIAD 482
Query: 731 WTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYI-----FRLRAKLEHYN 785
T+S+WVT+F E + I+G +A E+ E E L + LF Q F L K + YN
Sbjct: 483 STSSIWVTIFDEEMKKIIGKSADEMYEINEQDSELFENLFKQLTFIECRFHLICKKDEYN 542
>gi|302817221|ref|XP_002990287.1| hypothetical protein SELMODRAFT_131333 [Selaginella moellendorffii]
gi|300141996|gb|EFJ08702.1| hypothetical protein SELMODRAFT_131333 [Selaginella moellendorffii]
Length = 421
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 91/409 (22%), Positives = 179/409 (43%), Gaps = 72/409 (17%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNR 502
PI ++ + +W+++ARVT+K + + +G + S+D+ D ES EIR F + R
Sbjct: 2 PIKDINDHCYRWSLRARVTHKGKLVFFETGT-AGCVMSVDVADAESSEIRIVGFGENAKR 60
Query: 503 FHDMIEKDKVYYIS-NCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC 561
IE+ VY S N ++ + ++ +++E+ + T I ED++ +P+V
Sbjct: 61 LSSEIEQGSVYIFSGNSGVQRSKPAYTPYKSNWEIKASK-TMEIKRVEDDL-RIPNVVLK 118
Query: 562 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
+ +++S + +DV+G + + +++ K + +R + L D+S S+ M LW
Sbjct: 119 RTSVLDASKLSQETFVDVIGGVMWIGQ-KNISPKDSGAFMRRRMLCLSDESGHSIDMCLW 177
Query: 622 GKEAE--------TFDASNKPVIAVKAARVSEFQGN---------LLLMREIQD------ 658
+AE +P++ VK R+S++ G LL+ E++D
Sbjct: 178 DSKAEDEGSEIEDKLGRGERPIVCVKGGRISDYNGKSISVTGGSTLLVDPELEDVSRLRE 237
Query: 659 -------------------QQLGMGDKA------------DYCSV-RGIIQV--FRGSNT 684
+ + G KA ++ ++ R I+ V + +
Sbjct: 238 WMVASYDTTSFVHVTNSSSKAVISGTKAVSEMLSINLKVSEFSAIFRVIVSVKEIQTGDF 297
Query: 685 TYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLF 740
Y AC + C KKV + M++C C+ + + L + I D T +W F
Sbjct: 298 YYPACMKVVNGRQCGKKVTQVSESMWQCNSCDSDSGDIQLKYALHLCILDSTGHIWAVAF 357
Query: 741 QNEAESILGVTAQEVGESTED----HPALKKALFTQ-YIFRLRAKLEHY 784
+ A I+G+ A ++ +D A+ ++ ++ Y ++R KLE Y
Sbjct: 358 DDAANEIVGMPACKLAALQDDDYTGFSAIMDSIRSKMYNLKVRCKLESY 406
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 146/316 (46%), Gaps = 32/316 (10%)
Query: 32 EDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITL 91
ED++ +P+V + +++S + +DV+G + + +++ K + +R + L
Sbjct: 107 EDDL-RIPNVVLKRTSVLDASKLSQETFVDVIGGVMWIGQ-KNISPKDSGAFMRRRMLCL 164
Query: 92 VDQSQASVTMTLWGKEAE--------TFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVL 143
D+S S+ M LW +AE +P++ VK R+S++ G K++S++ S L
Sbjct: 165 SDESGHSIDMCLWDSKAEDEGSEIEDKLGRGERPIVCVKGGRISDYNG-KSISVTGGSTL 223
Query: 144 SLNPDIPECHKLQGWF-STQTNTRFEPV--SQRTGGMGGGAAGNLLLMREIQDQQLGMGD 200
++P++ + +L+ W ++ T F V S + G A + +L ++ +
Sbjct: 224 LVDPELEDVSRLREWMVASYDTTSFVHVTNSSSKAVISGTKAVSEMLSINLKVSEFS--- 280
Query: 201 KADYCSVRGIIQV--FRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFT 254
R I+ V + + Y AC + C KKV + M++C C+ +
Sbjct: 281 ----AIFRVIVSVKEIQTGDFYYPACMKVVNGRQCGKKVTQVSESMWQCNSCDSDSGDIQ 336
Query: 255 YRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED----HPALKKALFTQ-YI 309
+ L + I D T +W F + A I+G+ A ++ +D A+ ++ ++ Y
Sbjct: 337 LKYALHLCILDSTGHIWAVAFDDAANEIVGMPACKLAALQDDDYTGFSAIMDSIRSKMYN 396
Query: 310 FRLRAKLEHYNGTKKI 325
++R KLE Y T+K+
Sbjct: 397 LKVRCKLESYRDTEKL 412
>gi|391326949|ref|XP_003737971.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 290
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 98/196 (50%), Gaps = 4/196 (2%)
Query: 457 IKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYIS 516
++ RVT+KTPI+EW+ GKLFS + DE+ I + D+ + I+ + Y I+
Sbjct: 53 LEGRVTSKTPIKEWSKNGKEGKLFSFLMADETARISVIVSGDKTDEVFSTIQVNHCYRIT 112
Query: 517 NCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN 576
KP N FSS +++ E++ + + + E E ++P + + +I I +
Sbjct: 113 GFKPKPVNPHFSSTDHECEVTLSKISKI---KEIERDDIPQTQSLCSSIASILNIEKNCL 169
Query: 577 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVI 636
ID+ + D + ++T + + K+ LVD S+ V++ LW K E +
Sbjct: 170 IDLTAILFDLLPVQNITCR-DGSIQKKQTALLVDDSKKIVSLDLWNKHVEKLTDMEGCPV 228
Query: 637 AVKAARVSEFQGNLLL 652
++K+ V EF+G ++L
Sbjct: 229 SIKSITVKEFRGKIVL 244
Score = 43.1 bits (100), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
P N FSS +++ E++ + + + E E ++P + + +I I + ID+
Sbjct: 118 PVNPHFSSTDHECEVTLSKISKI---KEIERDDIPQTQSLCSSIASILNIEKNCLIDLTA 174
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+ D + ++T + + K+ LVD S+ V++ LW K E +++K+
Sbjct: 175 ILFDLLPVQNITCR-DGSIQKKQTALLVDDSKKIVSLDLWNKHVEKLTDMEGCPVSIKSI 233
Query: 125 RVSEFQG 131
V EF+G
Sbjct: 234 TVKEFRG 240
>gi|302755672|ref|XP_002961260.1| hypothetical protein SELMODRAFT_403000 [Selaginella moellendorffii]
gi|300172199|gb|EFJ38799.1| hypothetical protein SELMODRAFT_403000 [Selaginella moellendorffii]
Length = 326
Score = 85.9 bits (211), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 118/258 (45%), Gaps = 23/258 (8%)
Query: 86 KRDITLVDQSQASVTMTLWGKEAE--------TFDASNKPVIAVKAARVSEFQGGKTLSL 137
KR + L D S SV + LW +AE D+ +P+I VK +VS++ G ++
Sbjct: 59 KRTLCLGDDSGHSVDLCLWDLKAEEEGSYIQEQIDSGVQPIICVKGGKVSDYNGKSLSAI 118
Query: 138 SMSSVLSLNPDIPECHKLQGWFSTQTN-TRFEPVSQRTGGMGGGAAGNLLLMREIQDQQL 196
+S++L + P++ L+ W + N T F +S + L EI + QL
Sbjct: 119 GVSTIL-IEPEMEAVADLREWMTLYYNVTNFIHLSTSSSRQTVSCTTTL---SEISNMQL 174
Query: 197 GMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNT 252
+ + + V ++ + Y AC ++ C KK +G + C CN E
Sbjct: 175 KVLESSPIYRVIATVKEMKTDEFYYNACINVVNARQCGKKTTRTADG-WLCNYCNFESAN 233
Query: 253 FTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-STEDHPALKKAL----FTQ 307
++ L + I D ++ VW FQ A+ I+G++ +E+ E++PA +
Sbjct: 234 MEFKYALKMCIEDSSSHVWAIAFQEAAQEIVGMSTKELATMRDENYPAFSLLIDGIRSKI 293
Query: 308 YIFRLRAKLEHYNGTKKI 325
Y F++R+KLE Y +K+
Sbjct: 294 YKFKIRSKLEKYQDMEKL 311
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 95/248 (38%), Gaps = 67/248 (27%)
Query: 603 KRDITLVDQSQASVTMTLWGKEAE--------TFDASNKPVIAVKAARVSEFQGNLL--- 651
KR + L D S SV + LW +AE D+ +P+I VK +VS++ G L
Sbjct: 59 KRTLCLGDDSGHSVDLCLWDLKAEEEGSYIQEQIDSGVQPIICVKGGKVSDYNGKSLSAI 118
Query: 652 ----------------------------------------------LMREIQDQQLGMGD 665
+ EI + QL + +
Sbjct: 119 GVSTILIEPEMEAVADLREWMTLYYNVTNFIHLSTSSSRQTVSCTTTLSEISNMQLKVLE 178
Query: 666 KADYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYR 721
+ V ++ + Y AC ++ C KK +G + C CN E ++
Sbjct: 179 SSPIYRVIATVKEMKTDEFYYNACINVVNARQCGKKTTRTADG-WLCNYCNFESANMEFK 237
Query: 722 LILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-STEDHPALKKAL----FTQYIFR 776
L + I D ++ VW FQ A+ I+G++ +E+ E++PA + Y F+
Sbjct: 238 YALKMCIEDSSSHVWAIAFQEAAQEIVGMSTKELATMRDENYPAFSLLIDGIRSKIYKFK 297
Query: 777 LRAKLEHY 784
+R+KLE Y
Sbjct: 298 IRSKLEKY 305
>gi|77555321|gb|ABA98117.1| hypothetical protein LOC_Os12g26850 [Oryza sativa Japonica Group]
Length = 1201
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 101/201 (50%), Gaps = 11/201 (5%)
Query: 457 IKARVTNKTPIREWNNARGSGKLFSIDL--LDESG-EIRATMFNDECNRFHDMIEKDKVY 513
IKARV+ + N+ R K+ DL LDE+G I A M+ ++++ KVY
Sbjct: 703 IKARVSRLWDFHDLNDDR---KIVHTDLVLLDETGNSIHAQMYQHVIVNLKPLLQEGKVY 759
Query: 514 YISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISP 573
YI + T++ AN+ + + + + FT TT+ C D + P++ + P + +
Sbjct: 760 YIDSFTVRYANRTYRPVAHSQMILFTKWTTLEEC-VDVPADFPAITFSLTPFGDVPSLV- 817
Query: 574 DENI---DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA 630
D+NI D++GV + S+V ++ +KR + + D S +++ +TLWG+ A FDA
Sbjct: 818 DKNIFYVDIMGVITEIGTTSTVRPQSRNTDSLKRTLQICDASNSTLPLTLWGERATAFDA 877
Query: 631 SNKPVIAVKAARVSEFQGNLL 651
N + +V F G L+
Sbjct: 878 ENIYNAGQRQPQVVVFVGTLV 898
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 14/163 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI---DV 62
AN+ + + + + FT TT+ C D + P++ + P + + D+NI D+
Sbjct: 769 ANRTYRPVAHSQMILFTKWTTLEEC-VDVPADFPAITFSLTPFGDVPSLV-DKNIFYVDI 826
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN------- 115
+GV + S+V ++ +KR + + D S +++ +TLWG+ A FDA N
Sbjct: 827 MGVITEIGTTSTVRPQSRNTDSLKRTLQICDASNSTLPLTLWGERATAFDAENIYNAGQR 886
Query: 116 KP-VIAVKAARVSEFQG-GKTLSLSMSSVLSLNPDIPECHKLQ 156
+P V+ V ++G G TL+ S +N +IPE +L+
Sbjct: 887 QPQVVVFVGTLVKNYKGLGLTLTGSSPCKWYINLEIPEVVELK 929
>gi|297613121|ref|NP_001066722.2| Os12g0454300 [Oryza sativa Japonica Group]
gi|255670281|dbj|BAF29741.2| Os12g0454300 [Oryza sativa Japonica Group]
Length = 1051
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 101/201 (50%), Gaps = 11/201 (5%)
Query: 457 IKARVTNKTPIREWNNARGSGKLFSIDL--LDESG-EIRATMFNDECNRFHDMIEKDKVY 513
IKARV+ + N+ R K+ DL LDE+G I A M+ ++++ KVY
Sbjct: 553 IKARVSRLWDFHDLNDDR---KIVHTDLVLLDETGNSIHAQMYQHVIVNLKPLLQEGKVY 609
Query: 514 YISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISP 573
YI + T++ AN+ + + + + FT TT+ C D + P++ + P + +
Sbjct: 610 YIDSFTVRYANRTYRPVAHSQMILFTKWTTLEEC-VDVPADFPAITFSLTPFGDVPSLV- 667
Query: 574 DENI---DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA 630
D+NI D++GV + S+V ++ +KR + + D S +++ +TLWG+ A FDA
Sbjct: 668 DKNIFYVDIMGVITEIGTTSTVRPQSRNTDSLKRTLQICDASNSTLPLTLWGERATAFDA 727
Query: 631 SNKPVIAVKAARVSEFQGNLL 651
N + +V F G L+
Sbjct: 728 ENIYNAGQRQPQVVVFVGTLV 748
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 14/163 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI---DV 62
AN+ + + + + FT TT+ C D + P++ + P + + D+NI D+
Sbjct: 619 ANRTYRPVAHSQMILFTKWTTLEEC-VDVPADFPAITFSLTPFGDVPSLV-DKNIFYVDI 676
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN------- 115
+GV + S+V ++ +KR + + D S +++ +TLWG+ A FDA N
Sbjct: 677 MGVITEIGTTSTVRPQSRNTDSLKRTLQICDASNSTLPLTLWGERATAFDAENIYNAGQR 736
Query: 116 KP-VIAVKAARVSEFQG-GKTLSLSMSSVLSLNPDIPECHKLQ 156
+P V+ V ++G G TL+ S +N +IPE +L+
Sbjct: 737 QPQVVVFVGTLVKNYKGLGLTLTGSSPCKWYINLEIPEVVELK 779
>gi|385305380|gb|EIF49361.1| subunit of heterotrimeric replication protein a [Dekkera
bruxellensis AWRI1499]
Length = 138
Score = 84.7 bits (208), Expect = 2e-13, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 75/133 (56%), Gaps = 3/133 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A ++S++ + YE+ F T + CN+D +P + + FV L + + IDVLG+
Sbjct: 2 AKPQYSNLKHQYELQFDRDTVIEECNDDX--GVPKLHFDFVKLDQVXNLDNGTVIDVLGI 59
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ + + ++ K + +R++ +VD + +VT+ LW K A F+ S V+A K AR
Sbjct: 60 LKEVHDKQEIVSRSTGKPFDRREVEIVDDTHFAVTVALWNKHAREFNLSTGTVVAFKGAR 119
Query: 126 VSEFQGGKTLSLS 138
V ++ GGK+LSL+
Sbjct: 120 VQDY-GGKSLSLN 131
Score = 79.3 bits (194), Expect = 8e-12, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 69/129 (53%), Gaps = 2/129 (1%)
Query: 523 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 582
A ++S++ + YE+ F T + CN+D +P + + FV L + + IDVLG+
Sbjct: 2 AKPQYSNLKHQYELQFDRDTVIEECNDDX--GVPKLHFDFVKLDQVXNLDNGTVIDVLGI 59
Query: 583 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 642
+ + + ++ K + +R++ +VD + +VT+ LW K A F+ S V+A K AR
Sbjct: 60 LKEVHDKQEIVSRSTGKPFDRREVEIVDDTHFAVTVALWNKHAREFNLSTGTVVAFKGAR 119
Query: 643 VSEFQGNLL 651
V ++ G L
Sbjct: 120 VQDYGGKSL 128
>gi|348670089|gb|EGZ09911.1| hypothetical protein PHYSODRAFT_305275 [Phytophthora sojae]
Length = 441
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 28/211 (13%)
Query: 443 HPIVSLSPYQN-KWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECN 501
HPI LSP +W + AR+ +P+R+W+NA G G +
Sbjct: 4 HPIRDLSPVLGVQWEVVARIAFLSPVRQWSNANGRG-----------------------H 40
Query: 502 RFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC 561
++ D V+ + ++ A + F N+ YE+ + S +V P +D+ ++ V Y
Sbjct: 41 NLATILRGDGVFLFAGGRIRKAARGFGKPNHTYEIGLSSSASVTPVEDDD--SIEHVDYA 98
Query: 562 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
F + +A +D+L + +D L V + + +KR++ L D S + TLW
Sbjct: 99 FTTISDLAHADAHAQVDILAMIMDVGVLDKVVDRKD-GVQVKRELKLTDSSNVEIVCTLW 157
Query: 622 GKEAET-FDASNKPVIAVKAARVSEFQGNLL 651
K AE + A+ A + V+EF+G L
Sbjct: 158 NKFAEVDYTAALHQPYAFRQVMVNEFRGRSL 188
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 5/167 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A + F N+ YE+ + S +V P +D+ ++ V Y F + +A +D+L +
Sbjct: 62 AARGFGKPNHTYEIGLSSSASVTPVEDDD--SIEHVDYAFTTISDLAHADAHAQVDILAM 119
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET-FDASNKPVIAVKAA 124
+D L V + + +KR++ L D S + TLW K AE + A+ A +
Sbjct: 120 IMDVGVLDKVVDRKD-GVQVKRELKLTDSSNVEIVCTLWNKFAEVDYTAALHQPYAFRQV 178
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS 171
V+EF+G +LS + V+ NP++P+ LQ WF P+S
Sbjct: 179 MVNEFRGRSLSTLSYTMVVP-NPNLPDVITLQEWFDDTRGEFSVPIS 224
>gi|429327570|gb|AFZ79330.1| hypothetical protein BEWA_021780 [Babesia equi]
Length = 467
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 114/212 (53%), Gaps = 14/212 (6%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNR 502
PI +++ Y + WTI AR+ +K+P++ + + SID+ D++G+ IR + +
Sbjct: 7 PIKNITTYTSNWTILARIIDKSPLK---SIKSDNSFMSIDIKDKNGDTIRGKFWGVAATK 63
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK-YC 561
+ D+++K VY S ++ ANKKF++ ++YE++F + + D++G++ + + Y
Sbjct: 64 WDDILQKGNVYTFSKGSVNLANKKFNNTPHNYELTFNIDSQIEQA--DDIGDIDNERNYN 121
Query: 562 FVPLKTIAEISPDENIDVLGVCIDAAELS--SVTGKTNQKTYMKRDITLVDQSQASVTMT 619
FV L+ I + + V +C A +S S+T K +R + +VD S + +T
Sbjct: 122 FVTLREIKSTARESPFMVDILCF-AKSISPISMTSTKFSKEMKRRTLHIVDDSGYELEIT 180
Query: 620 LWGKEAETF---DASNKPVIAVKAARVSEFQG 648
LWG+ AE D +KP+I V + E+ G
Sbjct: 181 LWGQMAELELLDDILDKPLI-VSQITIKEWNG 211
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 156/343 (45%), Gaps = 38/343 (11%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK-YCFVPLKTIAEISPDENIDVLG 64
ANKKF++ ++YE++F + + D++G++ + + Y FV L+ I + + V
Sbjct: 84 ANKKFNNTPHNYELTFNIDSQIEQA--DDIGDIDNERNYNFVTLREIKSTARESPFMVDI 141
Query: 65 VCIDAAELS--SVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF---DASNKPVI 119
+C A +S S+T K +R + +VD S + +TLWG+ AE D +KP+I
Sbjct: 142 LCF-AKSISPISMTSTKFSKEMKRRTLHIVDDSGYELEITLWGQMAELELLDDILDKPLI 200
Query: 120 AVKAARVSEFQGGKTLSLSMSSVLSLN-----PDIPECHKLQGWF--STQTNTRFEPVSQ 172
V + E+ GG+ S++S + + D + L+ W+ + N F+ +
Sbjct: 201 -VSQITIKEWNGGRYGQSSLASDIKIANQQNVRDKDKLSNLETWYHQALSQNEIFKSLKS 259
Query: 173 RTGGMGGGAAGNLLLMREIQDQQLGMGDKADY---CSVRGIIQVFRGSNTT--YKACPSQ 227
++ + N +++ K Y C +R I + T Y++CP
Sbjct: 260 QS------SISNKETYEFSNIEKINSKTKGGYTFNCKLRRIFWKNKDGTTRLWYQSCPM- 312
Query: 228 DCNKKVI-DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVT 286
C KKVI D+++ +YRC C+ T R + + D++ + ++ ++G+T
Sbjct: 313 -CFKKVIIDEDSNIYRCIACDDAVVTPVLRFLFTCLFIDYSGQIICNIYGENGTKLIGMT 371
Query: 287 AQEVGESTEDHPALKKAL---FTQYIFRLRA--KLEHYNGTKK 324
Q++ D LK AL T F++ K + YNG K
Sbjct: 372 EQQL--DALDKDKLKNALDFVATHKDFKISGFYKSKTYNGEVK 412
>gi|312072189|ref|XP_003138952.1| BRCA2 repeat family protein [Loa loa]
Length = 502
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 79/313 (25%), Positives = 130/313 (41%), Gaps = 73/313 (23%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNR 502
PI L+PY W + +VT+ IR RG +FS +D+ G EIR + F D R
Sbjct: 178 PIKLLTPYCKNWRLCIKVTSVDEIR---CIRGQ-HIFSFLAVDDGGVEIRVSAFGDIACR 233
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
+I +++YYI+ ++K AN+++S +D E+ + V C + P V + F
Sbjct: 234 TATLICPEQMYYITRASVKMANRRYSRNEHDMEVVLRPDSEVTKCTDRPYILSPKVNFEF 293
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
V + + ID T + KR+I +VD S V + LWG
Sbjct: 294 VRIHNLQNF-----ID-----------------TEIEELQKREIQVVDDSGYYVAINLWG 331
Query: 623 KEAETF-DASNKPVIAVKAARVSEFQGNLLLM-----REIQD------------------ 658
++A+ F + + V+AVK V FQG + L+ + + D
Sbjct: 332 QKAKMFPNEQYQHVLAVKRLLVRCFQGTISLVSLASSKLLHDPHFPEADALRFWYSENRK 391
Query: 659 -------------------QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKK-V 698
+QL + ++ +I N YK CP+ C KK +
Sbjct: 392 SFKPASMNQVSSFHEHKWIKQLKPSLDGHFFNLTAMISSIFTENAVYKGCPT--CKKKLL 449
Query: 699 IDQNNGMYRCEKC 711
++++N +Y C KC
Sbjct: 450 VEKDNDLYICSKC 462
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 104/243 (42%), Gaps = 36/243 (14%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
AN+++S +D E+ + V C + P V + FV + +
Sbjct: 254 ANRRYSRNEHDMEVVLRPDSEVTKCTDRPYILSPKVNFEFVRIHNLQNF----------- 302
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF-DASNKPVIAVKAA 124
ID T + KR+I +VD S V + LWG++A+ F + + V+AVK
Sbjct: 303 -ID----------TEIEELQKREIQVVDDSGYYVAINLWGQKAKMFPNEQYQHVLAVKRL 351
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGN 184
V FQG +L SS L +P PE L+ W+S + F+P S +
Sbjct: 352 LVRCFQGTISLVSLASSKLLHDPHFPEADALRFWYS-ENRKSFKPASM-------NQVSS 403
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKK-VIDQNNGMYRC 243
+ I +QL + ++ +I N YK CP+ C KK +++++N +Y C
Sbjct: 404 FHEHKWI--KQLKPSLDGHFFNLTAMISSIFTENAVYKGCPT--CKKKLLVEKDNDLYIC 459
Query: 244 EKC 246
KC
Sbjct: 460 SKC 462
>gi|116309010|emb|CAH66127.1| OSIGBa0135L04.1 [Oryza sativa Indica Group]
Length = 502
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 101/203 (49%), Gaps = 15/203 (7%)
Query: 457 IKARVTNKTPIREWN--NARGSGKLFSIDL--LDESG-EIRATMFNDECNRFHDMIEKDK 511
I ARV+ R W+ + GSG +F DL LD+ G I A ++ + ++++ K
Sbjct: 18 ILARVS-----RLWDFCDLNGSGNIFHTDLVLLDQMGNSIHAQIYPPAIDSLRPLLKEQK 72
Query: 512 VYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI 571
VYYI + T++ AN+ + ++N + F+ TT E + P + + P I +
Sbjct: 73 VYYIDSFTVRYANRTYRPVDNSLMIVFSKWTTFEEYIE-PAADFPGITFSLTPFSDIPHL 131
Query: 572 SPDENI---DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF 628
D+ I DV+GV + + V K+ +KR I + D S +++ +TLWG+ A+ F
Sbjct: 132 V-DKTIFYVDVMGVITEVGSPTVVRPKSRNADSLKRTIQICDASNSTMPITLWGERADAF 190
Query: 629 DASNKPVIAVKAARVSEFQGNLL 651
DA++ A+V F G L+
Sbjct: 191 DANSVYNAGQTQAQVIVFVGTLV 213
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 18/178 (10%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI---DV 62
AN+ + ++N + F+ TT E + P + + P I + D+ I DV
Sbjct: 84 ANRTYRPVDNSLMIVFSKWTTFEEYIE-PAADFPGITFSLTPFSDIPHLV-DKTIFYVDV 141
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA--------S 114
+GV + + V K+ +KR I + D S +++ +TLWG+ A+ FDA +
Sbjct: 142 MGVITEVGSPTVVRPKSRNADSLKRTIQICDASNSTMPITLWGERADAFDANSVYNAGQT 201
Query: 115 NKPVIAVKAARVSEFQG-GKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS 171
VI V ++ G G T++ S LN DIPE +L+ FS F PVS
Sbjct: 202 QAQVIVFVGTLVKDYTGLGLTVTGSSPCKWYLNLDIPEVLELKESFSAN----FRPVS 255
>gi|156088471|ref|XP_001611642.1| hypothetical protein [Babesia bovis T2Bo]
gi|154798896|gb|EDO08074.1| conserved hypothetical protein [Babesia bovis]
Length = 462
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 107/212 (50%), Gaps = 12/212 (5%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNR 502
PI +++ Y N WTIKARV +K P+R +G + +D++D+ G+ IR + +
Sbjct: 6 PIKNITTYTNNWTIKARVLDKAPLRA---IKGDNHIMHVDVVDKHGDTIRVKFWGKAATK 62
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK-YC 561
+ +++EK KVY S ++ +NKKF++ + YE++ + + P D+ G++ + +
Sbjct: 63 WDEVLEKGKVYLFSKGNVELSNKKFNTTPHKYEITCHQDSQIDPV--DDEGDIKMQRDHK 120
Query: 562 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQ-KTYMKRDITLVDQSQASVTMTL 620
+ L+ I + V +CI +V T K KR +++VD + + + L
Sbjct: 121 LLTLRDIKSMPQVTQAPVDLLCIANTVHPAVNITTRAGKELPKRILSIVDNTGYEMDLVL 180
Query: 621 WGKEAET---FDASNKPVIAVKAARVSEFQGN 649
WG A K +IA K A V E+QG+
Sbjct: 181 WGDHANMDGIEQMEGKAIIATKLA-VKEWQGS 211
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 131/310 (42%), Gaps = 44/310 (14%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK-YCFVPLKTIAEISPDENIDVLG 64
+NKKF++ + YE++ + + P D+ G++ + + + L+ I + V
Sbjct: 83 SNKKFNTTPHKYEITCHQDSQIDPV--DDEGDIKMQRDHKLLTLRDIKSMPQVTQAPVDL 140
Query: 65 VCIDAAELSSVTGKTNQ-KTYMKRDITLVDQSQASVTMTLWGKEAET---FDASNKPVIA 120
+CI +V T K KR +++VD + + + LWG A K +IA
Sbjct: 141 LCIANTVHPAVNITTRAGKELPKRILSIVDNTGYEMDLVLWGDHANMDGIEQMEGKAIIA 200
Query: 121 VKAARVSEFQGGKTLSLSMSSVLSLN-----PDIPECHKLQGWF--STQTNTRFEPVSQR 173
K A V E+QG ++ S +S ++L D + +L+ WF + N F+ + +
Sbjct: 201 TKLA-VKEWQGSRSCQSSQNSDVTLATQENIKDQDKLTQLESWFENAKANNETFKSLKTQ 259
Query: 174 T------------GGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTY 221
+ G+ +L +++ K + + G ++++ Y
Sbjct: 260 AQAAKDNYEETDIANLLTKTKGSFILRAKLR--------KIHWKNKEGSVRMW------Y 305
Query: 222 KACPSQDCNKKVI-DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 280
+ACP C+KKV+ D++ Y+C C+ R I D T + + E
Sbjct: 306 QACPM--CSKKVVMDEDTNRYKCIACSDISVEPVPRYIFSCNFMDATGKINAQITAENGE 363
Query: 281 SILGVTAQEV 290
+LG +A+E+
Sbjct: 364 KLLGKSAKEL 373
>gi|391338168|ref|XP_003743433.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Metaseiulus occidentalis]
Length = 301
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 102/217 (47%), Gaps = 4/217 (1%)
Query: 436 SAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATM 495
++P + + L+P + + R+ +K IR W G+LFS + D S +I+A +
Sbjct: 49 ASPAKKVKSLGDLTPGKIGGIVNGRIESKGTIRTWKKDNEQGQLFSFVMSDGSADIQAVV 108
Query: 496 FNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNM 555
D C +HD I + Y I+ +K N ++ N+ E+ T + ++P + ++
Sbjct: 109 SGDMCTEYHDRITVGQCYQITAFKVKETNPAYNPTNHPCELHLTKISKMVPI---QGSHI 165
Query: 556 PSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQAS 615
P L IA+ ++ ++V + + + S++ + + T MK+ + LVD++
Sbjct: 166 PKSIVSRTTLAEIAKQDANKVVNVEAIVYEVGKPQSISCR-DGITRMKQSVLLVDETLKI 224
Query: 616 VTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLL 652
+++ LW + + D + V+ +V E+ G L
Sbjct: 225 ISLGLWAEAVQELDGMESNCVLVRNLQVKEYAGKKQL 261
Score = 43.5 bits (101), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/153 (18%), Positives = 70/153 (45%), Gaps = 4/153 (2%)
Query: 7 NKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVC 66
N ++ N+ E+ T + ++P + ++P L IA+ ++ ++V +
Sbjct: 137 NPAYNPTNHPCELHLTKISKMVPI---QGSHIPKSIVSRTTLAEIAKQDANKVVNVEAIV 193
Query: 67 IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARV 126
+ + S++ + + T MK+ + LVD++ +++ LW + + D + V+ +V
Sbjct: 194 YEVGKPQSISCR-DGITRMKQSVLLVDETLKIISLGLWAEAVQELDGMESNCVLVRNLQV 252
Query: 127 SEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF 159
E+ G K L+ +V+ P ++ W+
Sbjct: 253 KEYAGKKQLNSMSGTVVDKEPASETAKSMRLWW 285
>gi|440301626|gb|ELP94012.1| replication factor A 1, rfa1, putative [Entamoeba invadens IP1]
Length = 460
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 124/279 (44%), Gaps = 28/279 (10%)
Query: 350 LSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKIGNPQPLNTNTDNSS 409
L EF+I++I ++ T+ S ++L +N + K+ LN N
Sbjct: 66 LKEFSIIRITNAVLH-----VPTDESKTLVLAINNFDTVDKTQTKMLGANLLNVTKLNQV 120
Query: 410 TQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIRE 469
+Q A + ++ A+P S + P L+ QNK TIK RV +K +
Sbjct: 121 SQ----APHVRAGVPTSHSAAVPADLSKAKIT--PFAMLTAMQNKSTIKGRVISKQDKFK 174
Query: 470 WNNARGSGKLFSIDLLD-ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLK-PANKKF 527
+ G LF+ L D E GE+RAT FND C+ +D I+ YYIS K P NK +
Sbjct: 175 Y----AKGNLFNFVLQDKEGGELRATAFNDMCDALYDTIQVGSTYYISKGEFKVPTNKNY 230
Query: 528 SSINN-DYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDA 586
S D +M TTV EDE+ + S+ + + D D+ GV +
Sbjct: 231 RSAKMIDVDMVVGRYTTVQKA-EDELPAISSI----TAISDLLTSPVDSLYDICGVLVQV 285
Query: 587 AELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA 625
+ + N K ++R I + DQ++ V++ WG++A
Sbjct: 286 KDEDHL---KNDK--IRRSILVADQTKHVVSINFWGEDA 319
>gi|403363046|gb|EJY81258.1| hypothetical protein OXYTRI_21347 [Oxytricha trifallax]
Length = 384
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 6/201 (2%)
Query: 399 QPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIK 458
+PLN + TQQ N N N R ++ + PI +L+ + W I+
Sbjct: 98 RPLNFGQSQNQTQQYSQYQN-RAQNYFQNRQE--RNSTIIDSKYMPIKALNTFSRDWQIQ 154
Query: 459 ARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNRFHDMIEKDKVYYISN 517
A++ K+ +RE R + I+++D G I T F D F+ +E +KVY SN
Sbjct: 155 AKLARKSELRE--TQRQKTVVLKIEIIDVFGTTIECTFFADAAKDFNQRLEVNKVYLFSN 212
Query: 518 CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI 577
+KP +K+FS++ ND+ + F + +I CNED ++ + +I E ++ I
Sbjct: 213 GQVKPNDKRFSTLPNDFCIVFEQTANIIECNEDIQIEDQKGEFDNTLIGSIEECDVNKPI 272
Query: 578 DVLGVCIDAAELSSVTGKTNQ 598
DV GV I+ A+ V K Q
Sbjct: 273 DVSGVIIEMADQEIVKLKNGQ 293
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 221 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPV 261
YKAC S DC +KV +G+Y CEKC K F+ + + V
Sbjct: 338 YKACISNDCKRKVEQTQDGVYYCEKCKKCFDNYAPTYMFSV 378
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPV 726
YKAC S DC +KV +G+Y CEKC K F+ + + V
Sbjct: 338 YKACISNDCKRKVEQTQDGVYYCEKCKKCFDNYAPTYMFSV 378
Score = 39.3 bits (90), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
P +K+FS++ ND+ + F + +I CNED ++ + +I E ++ IDV G
Sbjct: 217 PNDKRFSTLPNDFCIVFEQTANIIECNEDIQIEDQKGEFDNTLIGSIEECDVNKPIDVSG 276
Query: 65 VCIDAAELSSVTGKTNQ 81
V I+ A+ V K Q
Sbjct: 277 VIIEMADQEIVKLKNGQ 293
>gi|294943193|ref|XP_002783789.1| replication factor a 1, rfa1, putative [Perkinsus marinus ATCC
50983]
gi|239896511|gb|EER15585.1| replication factor a 1, rfa1, putative [Perkinsus marinus ATCC
50983]
Length = 117
Score = 79.3 bits (194), Expect = 8e-12, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Query: 444 PIVSLSPYQNK-WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECN 501
PI +S Y + WTIKARVT K+P+R + NARG G +FS+DLLD+ G EIR + FN
Sbjct: 6 PIREISSYSMRNWTIKARVTAKSPVRHFTNARGGGSVFSVDLLDKEGSEIRGSFFNAAAE 65
Query: 502 RFHDMIEKDKVYYISNCTLK 521
+F +++K KVY S +K
Sbjct: 66 KFDKLLQKGKVYTFSKGNVK 85
>gi|62733633|gb|AAX95750.1| Eukaryotic protein of unknown function (DUF889), putative [Oryza
sativa Japonica Group]
gi|110288790|gb|ABG65978.1| hypothetical protein LOC_Os10g12174 [Oryza sativa Japonica Group]
Length = 1806
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 101/198 (51%), Gaps = 11/198 (5%)
Query: 459 ARVTNKTPIREWNNARGSGKLFSIDLL---DESGEIRATMFNDECNRFHDMIEKDKVYYI 515
ARV+ + E+ + + + K++ IDL+ ++ G I A +F F ++ + KVYY+
Sbjct: 1334 ARVSR---LWEFTDCKDATKIYHIDLVLVDEKGGSIHAQIFPPLIQVFKPLLAEGKVYYL 1390
Query: 516 SNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDE 575
+ +K +NK + + N M+FT T+V C D N P+V Y PL ++ D+
Sbjct: 1391 DSYRVKTSNKSYRPVANPLMMTFTKWTSVEQC-LDVPFNFPTVVYSLTPLNEVSNFV-DK 1448
Query: 576 N---IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN 632
N +DV+G + + + + K+ + +KR + + D + +++ ++LW ++A FDA +
Sbjct: 1449 NESFVDVIGFITEISTPTMLRPKSRDVSSLKRTVQICDTNNSTLNVSLWAEQALAFDAES 1508
Query: 633 KPVIAVKAARVSEFQGNL 650
++ F G L
Sbjct: 1509 IHKAGQSEPQIVLFVGTL 1526
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 86/177 (48%), Gaps = 18/177 (10%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN---IDV 62
+NK + + N M+FT T+V C D N P+V Y PL ++ D+N +DV
Sbjct: 1398 SNKSYRPVANPLMMTFTKWTSVEQC-LDVPFNFPTVVYSLTPLNEVSNFV-DKNESFVDV 1455
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS-------N 115
+G + + + + K+ + +KR + + D + +++ ++LW ++A FDA +
Sbjct: 1456 IGFITEISTPTMLRPKSRDVSSLKRTVQICDTNNSTLNVSLWAEQALAFDAESIHKAGQS 1515
Query: 116 KPVIAVKAARVSEFQGGKTLSLSMSSVLS--LNPDIPECHKLQGWFSTQTNTRFEPV 170
+P I + +++ G L+LS S +N D+PE L+ + F+P+
Sbjct: 1516 EPQIVLFVGTLAKNYPGIGLALSGGSACKWYINIDVPEMVDLK----NRIGANFQPI 1568
>gi|391325776|ref|XP_003737403.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
gi|391325887|ref|XP_003737458.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
gi|391326850|ref|XP_003737923.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
gi|391332922|ref|XP_003740876.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
gi|391333156|ref|XP_003740987.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
gi|391341618|ref|XP_003745124.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 280
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 105/238 (44%), Gaps = 11/238 (4%)
Query: 422 SNGVHNNVAIPRQASAPVVQTHP-------IVSLSPYQNKWTIKARVTNKTPIREWNNAR 474
+ + + I S PVV TH + ++ + ++ RV +KTP++ W+
Sbjct: 4 AEAIQRHSTIISITSVPVVVTHEQSGGAKTVQHITEGKGCGQVEGRVKSKTPVKHWSKGD 63
Query: 475 GSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDY 534
GSGK+F+ + D SGEI D DMI + Y I+ +K N ++ + +++
Sbjct: 64 GSGKIFNFVMSDTSGEINVIASGDSAEEIFDMITVGQCYKINAYKVKAVNPQYRATDHEC 123
Query: 535 EMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTG 594
E+ T + VIP + ++P ++ L + + +D+L V D +
Sbjct: 124 ELQLTKLSKVIPITGN---DLPKIQAQTTVLMELLTKPVNTTVDILVVVFDVRPPQTFNC 180
Query: 595 KTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLL 652
+ + +K+ +T++D S V + LW + D + ++ +V ++ G L
Sbjct: 181 R-DGINRVKQTVTVLDDSMKMVNLGLWSEFVGKLDGKEGEAVILQNLQVRDYNGTRQL 237
>gi|297725313|ref|NP_001175020.1| Os07g0113000 [Oryza sativa Japonica Group]
gi|255677455|dbj|BAH93748.1| Os07g0113000 [Oryza sativa Japonica Group]
Length = 1790
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 459 ARVTNKTPIREWNNARGSGKLFSIDLL---DESGEIRATMFNDECNRFHDMIEKDKVYYI 515
ARV+ + E+ + + + K++ IDL+ ++ G I A +F F ++ + KVYY+
Sbjct: 1239 ARVSR---LWEFTDCKDATKIYHIDLVLVDEKGGSIHAQIFPPLLQVFKPLLTEGKVYYL 1295
Query: 516 SNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDE 575
+ +K +NK + + N M+FT T+V C D N P+V Y PL ++ D+
Sbjct: 1296 DSYRVKTSNKSYRPVANPLMMTFTKWTSVEQC-LDVPFNFPTVVYTLTPLNEVSNFV-DK 1353
Query: 576 N---IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN 632
N +DV+G + + + + K+ + +KR I + D + +++ ++LW ++A FDA +
Sbjct: 1354 NESFVDVIGFITEISTPTMLRPKSRDASSLKRIIQICDANNSTLNVSLWAEQALAFDAES 1413
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 17/139 (12%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN---IDV 62
+NK + + N M+FT T+V C D N P+V Y PL ++ D+N +DV
Sbjct: 1303 SNKSYRPVANPLMMTFTKWTSVEQC-LDVPFNFPTVVYTLTPLNEVSNFV-DKNESFVDV 1360
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVK 122
+G + + + + K+ + +KR I + D + +++ ++LW ++A FDA
Sbjct: 1361 IGFITEISTPTMLRPKSRDASSLKRIIQICDANNSTLNVSLWAEQALAFDAE-------- 1412
Query: 123 AARVSEFQGGKTLSLSMSS 141
S + G+ L+LS S
Sbjct: 1413 ----SIHKAGQRLALSRGS 1427
>gi|385305381|gb|EIF49362.1| subunit of heterotrimeric replication protein a [Dekkera
bruxellensis AWRI1499]
Length = 100
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 43/54 (79%)
Query: 443 HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMF 496
+ I LSPYQN WTIKARV+ K+ +R W+N RG GKLF+++ LDE+GEIRAT F
Sbjct: 47 YSIDQLSPYQNNWTIKARVSYKSDMRTWSNQRGEGKLFNVNFLDETGEIRATGF 100
>gi|297607725|ref|NP_001060485.2| Os07g0651500 [Oryza sativa Japonica Group]
gi|255678024|dbj|BAF22399.2| Os07g0651500 [Oryza sativa Japonica Group]
Length = 2021
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 22/210 (10%)
Query: 457 IKARVTNKTPIREWN--NARGSGKLFSIDL--LDESG-EIRATMFNDECNRFHDMIEKDK 511
I ARV+ R W+ + GSG +F DL LD+ G I A ++ + ++++ K
Sbjct: 1641 ILARVS-----RLWDFCDLNGSGNIFHTDLVLLDQMGNSIHAQIYPPAIDSLRPLLKEQK 1695
Query: 512 VYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI 571
VYYI + T++ AN+ + ++N + F+ TT E + P + + P I +
Sbjct: 1696 VYYIDSFTVRYANRTYRPVDNSLMIVFSKWTTFEEYIE-PAADFPGITFSLTPFSDIPNL 1754
Query: 572 SPDENI----------DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
D+ I DV+GV + + V K+ +KR I + D S +++ +TLW
Sbjct: 1755 V-DKTIFYVGLYGMQPDVMGVITEVGSPTVVRPKSRNADSLKRTIQICDASNSTMPVTLW 1813
Query: 622 GKEAETFDASNKPVIAVKAARVSEFQGNLL 651
G+ A+ FDA++ A+V F G L+
Sbjct: 1814 GERADAFDANSVYNAGQTQAQVIVFVGTLV 1843
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 25/185 (13%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI----- 60
AN+ + ++N + F+ TT E + P + + P I + D+ I
Sbjct: 1707 ANRTYRPVDNSLMIVFSKWTTFEEYIE-PAADFPGITFSLTPFSDIPNLV-DKTIFYVGL 1764
Query: 61 -----DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA-- 113
DV+GV + + V K+ +KR I + D S +++ +TLWG+ A+ FDA
Sbjct: 1765 YGMQPDVMGVITEVGSPTVVRPKSRNADSLKRTIQICDASNSTMPVTLWGERADAFDANS 1824
Query: 114 ------SNKPVIAVKAARVSEFQG-GKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR 166
+ VI V ++ G G T++ S LN DIPE +L+ FS
Sbjct: 1825 VYNAGQTQAQVIVFVGTLVKDYTGLGLTVTGSSPCKWYLNLDIPEVLELKESFSAN---- 1880
Query: 167 FEPVS 171
F PVS
Sbjct: 1881 FRPVS 1885
>gi|391326557|ref|XP_003737779.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Metaseiulus occidentalis]
Length = 131
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 231 KKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 290
KKV DQ +G + CEKC + +RLIL + + D T +W T F +AE ILGVTA +
Sbjct: 2 KKVHDQGDGTFSCEKCASSGPNYKWRLILKMAVADPTKQLWCTAFNEKAEQILGVTAATL 61
Query: 291 GESTEDHP-----ALKKALFTQYIFRLRAKLEHYNGTKKIPDGV 329
G+ +E++P ++F Q+ F+ R ++E + ++ V
Sbjct: 62 GDYSENNPDEMDRIFSASMFKQFHFKFRGRMEVFQDERRFQTAV 105
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 696 KKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 755
KKV DQ +G + CEKC + +RLIL + + D T +W T F +AE ILGVTA +
Sbjct: 2 KKVHDQGDGTFSCEKCASSGPNYKWRLILKMAVADPTKQLWCTAFNEKAEQILGVTAATL 61
Query: 756 GESTEDHP-----ALKKALFTQYIFRLRAKLEHYN 785
G+ +E++P ++F Q+ F+ R ++E +
Sbjct: 62 GDYSENNPDEMDRIFSASMFKQFHFKFRGRMEVFQ 96
>gi|57899579|dbj|BAD87158.1| DNA binding protein-like [Oryza sativa Japonica Group]
gi|57899664|dbj|BAD87333.1| DNA binding protein-like [Oryza sativa Japonica Group]
Length = 1083
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 101/198 (51%), Gaps = 11/198 (5%)
Query: 459 ARVTNKTPIREWNNARGSGKLFSIDLL---DESGEIRATMFNDECNRFHDMIEKDKVYYI 515
ARV+ + E+ + + + K++ IDL+ ++ G I A +F F ++ + KVYY+
Sbjct: 533 ARVSR---LWEFTDCKDATKIYHIDLVLVDEKGGSIHAQIFPLLLQVFKPLLTEGKVYYL 589
Query: 516 SNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDE 575
+ +K +NK + + N M+FT T+V C D N P+V Y PL ++ D+
Sbjct: 590 DSYRVKTSNKSYRPVANPLMMTFTKWTSVEQC-LDVPFNFPTVVYSLTPLNEVSNFV-DK 647
Query: 576 N---IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN 632
N +DV+GV + + + + K+ + +KR + + + +++ ++LW ++A FDA +
Sbjct: 648 NESFVDVIGVITEISTPTMLRPKSRDASSLKRTVQICYANNSTLNVSLWAEQALAFDAES 707
Query: 633 KPVIAVKAARVSEFQGNL 650
++ F G L
Sbjct: 708 IHKAGQSEPQIVLFVGTL 725
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 136/313 (43%), Gaps = 51/313 (16%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN---IDV 62
+NK + + N M+FT T+V C D N P+V Y PL ++ D+N +DV
Sbjct: 597 SNKSYRPVANPLMMTFTKWTSVEQC-LDVPFNFPTVVYSLTPLNEVSNFV-DKNESFVDV 654
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS-------N 115
+GV + + + + K+ + +KR + + + +++ ++LW ++A FDA +
Sbjct: 655 IGVITEISTPTMLRPKSRDASSLKRTVQICYANNSTLNVSLWAEQALAFDAESIHKAGQS 714
Query: 116 KPVIAVKAARVSEFQGGKTLSLSMSSVLS--LNPDIPECHKLQGWFSTQTNTRFEPVSQR 173
+P I + +++ G L+LS SV +N ++P+ L+ + F+P+
Sbjct: 715 EPQIVLFVGTLAKNYPGIGLALSRGSVCKWYININVPKMVDLKN----RIGANFQPI--- 767
Query: 174 TGGMGGGAAGNLLLMREIQDQQLGMGDK-ADYCSVRGIIQV--FRGSNTTYKACPSQDCN 230
+ +Q + D+ AD +VR + + + T ++A
Sbjct: 768 ---------------KLLQAPTTNIADENADDKTVRERLDMNPHKNRRTRFQA---NVTI 809
Query: 231 KKVIDQNNGMY-RCEKCNKEFNTF--------TYRLILPVMIGDWTNSVWVTLFQNEAES 281
+K+ + ++ Y CEKC + F YR L V+ GD T LF A+
Sbjct: 810 RKICNDSSWWYNSCEKCLRVVKPFGYTYNEIIMYRYKLSVLAGDDTADAVFILFGKIAQR 869
Query: 282 ILGVTAQEVGEST 294
I+ + + E T
Sbjct: 870 IVRKPVELLVEQT 882
>gi|324515631|gb|ADY46264.1| Replication factor A 73 kDa subunit [Ascaris suum]
Length = 124
Score = 77.0 bits (188), Expect = 4e-11, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 15/123 (12%)
Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED- 296
+ YRCEKCN ++F Y L+L + + D++ S WVT+F+ +A +LG TA E+G+ E
Sbjct: 2 DNQYRCEKCNLTLDSFKYVLLLSMELSDFSGSHWVTVFEEKATKLLGKTAAELGDLLESN 61
Query: 297 -----HPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDIITDGTLS 351
+ F +Y FR+RAK E YN T++I V +LN++ D +
Sbjct: 62 RLDEYNDVFSAVRFREYTFRIRAKSEFYNDTERIKWSV---------FELNNVDYDKYVE 112
Query: 352 EFT 354
E T
Sbjct: 113 ELT 115
Score = 72.4 bits (176), Expect = 9e-10, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 6/89 (6%)
Query: 703 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED- 761
+ YRCEKCN ++F Y L+L + + D++ S WVT+F+ +A +LG TA E+G+ E
Sbjct: 2 DNQYRCEKCNLTLDSFKYVLLLSMELSDFSGSHWVTVFEEKATKLLGKTAAELGDLLESN 61
Query: 762 -----HPALKKALFTQYIFRLRAKLEHYN 785
+ F +Y FR+RAK E YN
Sbjct: 62 RLDEYNDVFSAVRFREYTFRIRAKSEFYN 90
>gi|281210368|gb|EFA84534.1| putative ssDNA-binding protein [Polysphondylium pallidum PN500]
Length = 636
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 93/404 (23%), Positives = 160/404 (39%), Gaps = 95/404 (23%)
Query: 456 TIKARVTNKTPIREWNNARGSGKLFSIDLLDES---GEIRATMF-----NDECNRFHDMI 507
TI+A V K+ I++W+N+ G + +++L+D+S EI+ T+F N+ C + + I
Sbjct: 183 TIRATVRAKSTIKQWHNSNSGGSILNLELIDDSDEKNEIKVTIFGRNNENNLCVQIDEAI 242
Query: 508 EKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKT 567
Y SN + P N F+ +++ E++FT +T V + P +
Sbjct: 243 HVGSTYDFSNFKINPKNPNFNKLSHPCELTFTENTKYY------VSSAPINAHTLYNFVK 296
Query: 568 IAEISP-------DENIDVLGVCIDAAELSSVTGKTN------QKTYMKRDITLVDQSQA 614
IA+++P ID+ G + + +S+ K T +K ++D S
Sbjct: 297 IADLTPPAANETNSPPIDLFGYVSNVSGTTSINRKATSNTDNANSTLLKCTFRILDTSAK 356
Query: 615 SVTMTLWGKEAETFDAS-NKP-VIAVKAARVSEFQG-----------------------N 649
S+ +T +G++AET NK +IA+K+A++S F N
Sbjct: 357 SIDVTAFGQQAETISKQLNKGNIIAIKSAKISSFSKCSASITYSSTYEVNPPQLQQECQN 416
Query: 650 LLL--------MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVI-- 699
LL+ + + + G+ D S+R ++V N P N V+
Sbjct: 417 LLMWVNSHGDDAECLSESYVAGGNSDDKDSIRCTVEVLPQLNLGND--PILTKNYVVVGT 474
Query: 700 ------------DQNNGMYRCEKCNK----------EFNTFTYRLILPVMIGDWTNSVWV 737
DQ + C C K ++ T+RL D T SV V
Sbjct: 475 LSTLSNVSLTSNDQKSQYTGCSACKKKNCNCGQPQIKYYRATFRL------QDETGSVLV 528
Query: 738 TLFQNEAESILGVTAQEVGESTEDHPALKKA---LFTQYIFRLR 778
F E +LG A+ + D L++ Y+ RLR
Sbjct: 529 DAFSGTVEKMLGANAERFFDQLTDEDRLQRVNEICSVPYLVRLR 572
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 141/345 (40%), Gaps = 65/345 (18%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISP-------D 57
P N F+ +++ E++FT +T V + P + IA+++P
Sbjct: 257 PKNPNFNKLSHPCELTFTENTKYY------VSSAPINAHTLYNFVKIADLTPPAANETNS 310
Query: 58 ENIDVLGVCIDAAELSSVTGKTN------QKTYMKRDITLVDQSQASVTMTLWGKEAETF 111
ID+ G + + +S+ K T +K ++D S S+ +T +G++AET
Sbjct: 311 PPIDLFGYVSNVSGTTSINRKATSNTDNANSTLLKCTFRILDTSAKSIDVTAFGQQAETI 370
Query: 112 DAS-NKP-VIAVKAARVSEFQGGKTLSLSMSSVLSLNPD--IPECHKLQGWFSTQTNTRF 167
NK +IA+K+A++S F + S++ SS +NP EC L W ++ +
Sbjct: 371 SKQLNKGNIIAIKSAKISSFSKC-SASITYSSTYEVNPPQLQQECQNLLMWVNSHGDDA- 428
Query: 168 EPVSQRTGGMGGGAAGNLLLMREIQD--QQLGMGDKA----DYCSVRGIIQVF------- 214
E +S+ + GG + + +R + QL +G+ +Y V G +
Sbjct: 429 ECLSESY--VAGGNSDDKDSIRCTVEVLPQLNLGNDPILTKNYVVV-GTLSTLSNVSLTS 485
Query: 215 ---RGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW 271
+ T AC ++CN C + ++ T+RL D T SV
Sbjct: 486 NDQKSQYTGCSACKKKNCN------------CGQPQIKYYRATFRL------QDETGSVL 527
Query: 272 VTLFQNEAESILGVTAQEVGESTEDHPALKKA---LFTQYIFRLR 313
V F E +LG A+ + D L++ Y+ RLR
Sbjct: 528 VDAFSGTVEKMLGANAERFFDQLTDEDRLQRVNEICSVPYLVRLR 572
>gi|399217121|emb|CCF73808.1| unnamed protein product [Babesia microti strain RI]
Length = 455
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 99/190 (52%), Gaps = 8/190 (4%)
Query: 439 VVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFN 497
+V+ I ++ Y W I ARV K+P+ N + + KLF ID++D+ G+ IRA +
Sbjct: 1 MVEQSLIRDITTYTTNWIIIARVVEKSPL---NTLKNNNKLFYIDIVDKLGDTIRAKFWG 57
Query: 498 DECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPS 557
+ ++ ++E KVY S + +N+KF++ N YE++F ++ + P +D + N
Sbjct: 58 NAADKHFPLLELGKVYSFSQGRVSVSNRKFNTNPNMYELTFEANSPISPIEDDGLINTKR 117
Query: 558 VKYCFVPLKTIAEISPDENI--DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQAS 615
++ F+ ++ I S + D+L + A+ + K+ +T KR I +VD S
Sbjct: 118 -RFNFISIRDIKNTSKELPFVCDILCIVNTVAQPQILNMKSGDET-QKRSIFVVDDSNYQ 175
Query: 616 VTMTLWGKEA 625
+ ++ W +A
Sbjct: 176 MEVSFWSDKA 185
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 72/335 (21%), Positives = 145/335 (43%), Gaps = 25/335 (7%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI--DVL 63
+N+KF++ N YE++F ++ + P +D + N ++ F+ ++ I S + D+L
Sbjct: 83 SNRKFNTNPNMYELTFEANSPISPIEDDGLINTKR-RFNFISIRDIKNTSKELPFVCDIL 141
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA--ETFDASNKPVIAV 121
+ A+ + K+ +T KR I +VD S + ++ W +A + F+ + +
Sbjct: 142 CIVNTVAQPQILNMKSGDET-QKRSIFVVDDSNYQMEVSFWSDKANLDIFNDCIGKSVVL 200
Query: 122 KAARVSEFQGGKT-LSLSMSSVLSL---NPDIPECHKLQGWFSTQTNTRFEPVSQRTGGM 177
++ ++Q ++ S S SS+ N D + H L+ W+ + + +S ++ G
Sbjct: 201 SQIKIKDWQNVRSGYSWSGSSITYACDENVDKSQLHSLEKWYHEAISKNHDFISMKSNGQ 260
Query: 178 GGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT--YKACPSQDCNKKVID 235
+ + I G ++ I R T Y +C C KKV
Sbjct: 261 SHVYSIERKDLSSISMNNEVGGSYEFVAHLKRIYWKNRDGEITLIYPSC--NKCKKKVHM 318
Query: 236 QNNGMYRCEKCNKEFN-TFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGEST 294
N + C C+ F YR + D++ + + F + +S++ V A ++ +
Sbjct: 319 DENEKFVCPSCDSIVEPEFRYR--FTAIFADYSGHLPIHFF-DIGQSLINVQADKL--KS 373
Query: 295 EDHPALKKALFTQYIFRL-----RAKLEHYNGTKK 324
DH +LK+ L +++L AK+ +NG K
Sbjct: 374 LDHDSLKQFLDHDILYQLFRVSVYAKVSTFNGEVK 408
>gi|116785534|gb|ABK23763.1| unknown [Picea sitchensis]
Length = 67
Score = 76.3 bits (186), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDE 499
+ +P+VSL+ YQ WTIK RVTNK P+R + NARG G +F+++L DE G +I+ATMF +
Sbjct: 4 RVYPLVSLNRYQGNWTIKVRVTNKGPLRTFRNARGEGSVFNVELTDEDGTQIQATMFKEA 63
Query: 500 CNRF 503
++F
Sbjct: 64 ADKF 67
>gi|300120593|emb|CBK20147.2| unnamed protein product [Blastocystis hominis]
Length = 182
Score = 75.5 bits (184), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 12/142 (8%)
Query: 188 MREIQDQQLGMGDKADYCSVRGIIQ-VFRGSNTTYKACPS-----QDCNKKVIDQNNGMY 241
+ IQD+QLG +K DY +V+ +++ + + Y ACP+ + C KK+I +G +
Sbjct: 7 LSAIQDEQLGFKEKPDYLTVKVMVRSIPHDRSVVYPACPNVKEDGRKCQKKLIQGVDG-W 65
Query: 242 RCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-----STED 296
CE CN+ YR I + + D++ S +V LF +E E + A + E S E
Sbjct: 66 SCESCNRVVEAPEYRYIFNMEVMDYSGSQYVQLFNDEGERFFEIPAGRMNELEKSNSEEY 125
Query: 297 HPALKKALFTQYIFRLRAKLEH 318
K LF +YI LR K++
Sbjct: 126 EKVFKNRLFKEYIMTLRVKVDQ 147
Score = 75.5 bits (184), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 12/142 (8%)
Query: 653 MREIQDQQLGMGDKADYCSVRGIIQ-VFRGSNTTYKACPS-----QDCNKKVIDQNNGMY 706
+ IQD+QLG +K DY +V+ +++ + + Y ACP+ + C KK+I +G +
Sbjct: 7 LSAIQDEQLGFKEKPDYLTVKVMVRSIPHDRSVVYPACPNVKEDGRKCQKKLIQGVDG-W 65
Query: 707 RCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-----STED 761
CE CN+ YR I + + D++ S +V LF +E E + A + E S E
Sbjct: 66 SCESCNRVVEAPEYRYIFNMEVMDYSGSQYVQLFNDEGERFFEIPAGRMNELEKSNSEEY 125
Query: 762 HPALKKALFTQYIFRLRAKLEH 783
K LF +YI LR K++
Sbjct: 126 EKVFKNRLFKEYIMTLRVKVDQ 147
>gi|66771039|gb|AAY54831.1| IP08052p [Drosophila melanogaster]
Length = 189
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 9/161 (5%)
Query: 482 IDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHS 541
+ LLDESGEI +F D N + I+ VY IS ++ A + +N ++ F +
Sbjct: 1 MHLLDESGEITGLVFADYDNGLYGQIQTGLVYLISGFEVEKAISSYKVSDNPNQLFFCAN 60
Query: 542 TTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTY 601
T + D + P KY F+PL ++ E +D +G+C + L N+
Sbjct: 61 TVLELSACDRI---PREKYSFLPLLKVSSKRDQEPVDAIGICAEVGMLE------NRGGC 111
Query: 602 MKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 642
R++ LVD V + LW KEA F VI VK AR
Sbjct: 112 FIRELLLVDPDFHPVILNLWQKEAVNFVGQRDDVIVVKGAR 152
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 38 MPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA 97
+P KY F+PL ++ E +D +G+C + L N+ R++ LVD
Sbjct: 71 IPREKYSFLPLLKVSSKRDQEPVDAIGICAEVGMLE------NRGGCFIRELLLVDPDFH 124
Query: 98 SVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQG 157
V + LW KEA F VI VK AR L+ S + + +NPDIP+ +
Sbjct: 125 PVILNLWQKEAVNFVGQRDDVIVVKGARAQLHNNEMKLNASWYTNMQINPDIPDATGMLE 184
Query: 158 WFSTQ 162
W++ Q
Sbjct: 185 WYNNQ 189
>gi|408381003|ref|ZP_11178553.1| Replication factor-A domain-containing protein [Methanobacterium
formicicum DSM 3637]
gi|407816268|gb|EKF86830.1| Replication factor-A domain-containing protein [Methanobacterium
formicicum DSM 3637]
Length = 791
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/350 (24%), Positives = 159/350 (45%), Gaps = 56/350 (16%)
Query: 457 IKARVTNKTPIREWNNARG-SGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYI 515
I RV N E+ G SG + + ++ D++G +R ++++++ + M E D + I
Sbjct: 426 IVGRVVNLYEPNEFQRDDGTSGMVRTAEIADDTGMVRVSLWDNKAE--YPMKEGDAIK-I 482
Query: 516 SNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK---YCFVPLKTIAE-I 571
N + + + ++S ++ +I E+E+ ++PS+K K I E +
Sbjct: 483 ENARTRLGDYQV-------DLSVGKTSRLIEPTEEEIKDLPSLKDVESMIYQTKKIHELV 535
Query: 572 SPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG-------KE 624
D ++ + G + AE + T K++ T + R + + D S V ++LW KE
Sbjct: 536 EGDRDVSLFGRVLSVAEPTQFT-KSDGSTGIVRSMEIADDS-GVVRVSLWDDQANTSFKE 593
Query: 625 AETFDASNKPV------IAVKAAR----------------VSEFQGNLLLMREIQDQQLG 662
E N V I + R + E +G L + I D +
Sbjct: 594 GEAVKIENPRVNLRNNNIELSVGRTTIITKPEEDEASVPSLDEIEGKLYPSKNIGD--IE 651
Query: 663 MGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRL 722
GD++ V G + RGS ++ CP+ CNK+V +N Y C+ C +E +
Sbjct: 652 EGDQS--IKVSGEVVDIRGSKILFEMCPN--CNKRVNWVDNA-YICDICGEEIKKPNMLM 706
Query: 723 ILPVMIGDWTNSVWVTLFQNEAESILGVT---AQEVGESTEDHPALKKAL 769
I+ +M+ D T ++ +T F+ AE +LG+T A+E+ +T D +L++ +
Sbjct: 707 IISLMLEDDTGTISITFFRKAAEEVLGMTTAEAEEIIATTGDEGSLEEKV 756
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 155/344 (45%), Gaps = 61/344 (17%)
Query: 16 DY--EMSFTHSTTVIPCNEDEVGNMPSVK---YCFVPLKTIAE-ISPDENIDVLGVCIDA 69
DY ++S ++ +I E+E+ ++PS+K K I E + D ++ + G +
Sbjct: 491 DYQVDLSVGKTSRLIEPTEEEIKDLPSLKDVESMIYQTKKIHELVEGDRDVSLFGRVLSV 550
Query: 70 AELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEF 129
AE + T K++ T + R + + D S V ++LW +A T + V ++ RV+
Sbjct: 551 AEPTQFT-KSDGSTGIVRSMEIADDS-GVVRVSLWDDQANTSFKEGEAV-KIENPRVNLR 607
Query: 130 QGGKTLSLSMSSVLSLNPD-----IPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGN 184
LS+ +++++ P+ +P +++G + P S+ G + G
Sbjct: 608 NNNIELSVGRTTIIT-KPEEDEASVPSLDEIEG--------KLYP-SKNIGDIEEG---- 653
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
DQ + V G + RGS ++ CP+ CNK+V +N Y C+
Sbjct: 654 --------DQSI---------KVSGEVVDIRGSKILFEMCPN--CNKRVNWVDNA-YICD 693
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVT---AQEVGESTEDHPALK 301
C +E +I+ +M+ D T ++ +T F+ AE +LG+T A+E+ +T D +L+
Sbjct: 694 ICGEEIKKPNMLMIISLMLEDDTGTISITFFRKAAEEVLGMTTAEAEEIIATTGDEGSLE 753
Query: 302 KALFT----QYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQL 341
+ + Q A + YN + V +N+ M+ +L
Sbjct: 754 EKVGDLVGRQITVIADASFDEYN------EEVRLNARKMVDVKL 791
>gi|226508478|ref|NP_001142593.1| uncharacterized protein LOC100274860 [Zea mays]
gi|195607088|gb|ACG25374.1| hypothetical protein [Zea mays]
Length = 549
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/350 (23%), Positives = 138/350 (39%), Gaps = 36/350 (10%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI-AEISPDEN-IDVL 63
A F ++ D + FT T ++ D P Y P I + I N +DVL
Sbjct: 84 AKNGFKVVDGDKMIQFTFYT-IVKRVIDPPTVFPKYIYRLTPFDQIESNIQTKPNFLDVL 142
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN-------K 116
GV I EL+ + ++ + R I + D S + +TLW +A +F + K
Sbjct: 143 GVIIQVHELTPIHIQSQLNPVLTRSIIIEDLSNTPLKITLWADQATSFSLHDVYDPNTKK 202
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT---------RF 167
P+I + + +F G LS + NP IPE S QT T
Sbjct: 203 PIIVLFVGCLPKFYKGVYLSGGSACRWYFNPTIPEAEPYHT--SQQTRTIALQLPHALNH 260
Query: 168 EPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQ 227
P + + +L+ + ++G C+V I ++ + Y AC
Sbjct: 261 PPTIENKEAAESKSLYDLIRINPYDFPEIGYE-----CTV-TITEIPVENKWWYPAC--T 312
Query: 228 DCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA 287
C K QN +Y C CN ++ +T+R L + D T + + F N A I+G +
Sbjct: 313 KCFKASTPQNT-VYHCNDCN--WDKYTFRYKLKFLASDGTETAEMFCFNNIARQIVGKSR 369
Query: 288 QEVGESTEDH----PALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINS 333
+ V +H P L + + ++ FR+ + + P+ + INS
Sbjct: 370 EVVLRGVSEHSSIPPDLAQIISLKFTFRVTVDDQSFFQENNHPNVLRINS 419
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 95/220 (43%), Gaps = 16/220 (7%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL--DESGE-IRATMFNDECN 501
+ L P++ TI+ VT K R A + L +D++ D+ G I A + + N
Sbjct: 6 LTDLEPHKKHATIQVCVTRKWLFR---GANDNAPLQHVDMILSDQKGNAIYAEIPANLAN 62
Query: 502 RFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC 561
+ IE+ ++Y IS + A F ++ D + FT T ++ D P Y
Sbjct: 63 QKAPDIEEGRIYNISRFRVCAAKNGFKVVDGDKMIQFTFYT-IVKRVIDPPTVFPKYIYR 121
Query: 562 FVPLKTI-AEISPDEN-IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
P I + I N +DVLGV I EL+ + ++ + R I + D S + +T
Sbjct: 122 LTPFDQIESNIQTKPNFLDVLGVIIQVHELTPIHIQSQLNPVLTRSIIIEDLSNTPLKIT 181
Query: 620 LWGKEAETFDASN-------KPVIAVKAARVSEFQGNLLL 652
LW +A +F + KP+I + + +F + L
Sbjct: 182 LWADQATSFSLHDVYDPNTKKPIIVLFVGCLPKFYKGVYL 221
>gi|302824934|ref|XP_002994105.1| hypothetical protein SELMODRAFT_4757 [Selaginella moellendorffii]
gi|300138043|gb|EFJ04826.1| hypothetical protein SELMODRAFT_4757 [Selaginella moellendorffii]
Length = 232
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 104/207 (50%), Gaps = 9/207 (4%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDE-SGEIRATMFNDECNRF 503
I SL+ KW+ KARVT+K +R++ R +G +F+ + D S EIR + +
Sbjct: 1 IASLTNRSYKWSFKARVTHKDTLRQFTTKR-TGWVFNFYVADSASSEIRIVSYGETARAL 59
Query: 504 HDMIEKDKVYYIS-NCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
+ + + +Y S C L+ A++ ++ +E+ ++P +DE +P +
Sbjct: 60 SEKVIQGAIYIFSGTCGLRSASELYTPFPATWEILADKKMEIMPTADDEC--IPRIVLHR 117
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
+ I +I+ + ID++GV I L++VT + + + +R +T+ D S SV + LWG
Sbjct: 118 KCIAEILDITINSYIDLVGVVIWVG-LTTVTPRGVESSNKRRMMTICDNSFHSVDVCLWG 176
Query: 623 KEAETFDA---SNKPVIAVKAARVSEF 646
A+ + N ++ +K R+ EF
Sbjct: 177 DYADEEGSQLLENISIVCIKGGRICEF 203
>gi|10177987|dbj|BAB11360.1| replication protein A1-like protein [Arabidopsis thaliana]
Length = 543
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/362 (22%), Positives = 151/362 (41%), Gaps = 68/362 (18%)
Query: 448 LSPYQNKWTIKARVTNKTPIREWNNAR-GSGKLFSIDLLDESG-EIRATMFNDECNRFHD 505
+ P++ W ++ ++ + W + S + + + DE+G ++ T+ +FH
Sbjct: 13 VKPFKTNWCVRVKI-----LHLWRQTKDASRETLDVIICDENGSKMHITIRKHYIGKFHR 67
Query: 506 MIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPL 565
I+ I N TL P K+ + Y M+F H+T VI C D V + SV
Sbjct: 68 SIKVGDWKIIDNFTLSPLTGKYKISSLTYRMAFNHNTDVIKC--DPVSD--SVFLDLADF 123
Query: 566 KTIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
+ + S DEN ID+LG + ++ + + K K + + D S + TLWG
Sbjct: 124 EGVKTESYDENVLIDILGQVVRVGKVDEIMAQ--NKPNKKLEFQIRDASNERLPCTLWGV 181
Query: 624 EAE-TFDA------SNKPVIAVKAARVSEFQGNL------------------LLMREIQD 658
AE F A K V+ ++ A+++ F+GN L ++ +
Sbjct: 182 FAEKVFSALKSIKHDEKTVVLIRYAKINNFKGNHAFDVSEVIINPVHVPEVELFVKSLPS 241
Query: 659 QQLGMGDKADYCSVRGIIQV----FRGS--------NTTYKACPSQDCNKK--VIDQNNG 704
L + + +Y + R +I+V GS Y CP CN+K ++ ++
Sbjct: 242 DGLALTIQDNYVN-RDLIKVGQWRILGSIFAIDTDWGWFYFGCPK--CNRKTELVKESTS 298
Query: 705 M-----------YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 753
+ C+KC + R L V + D T + + +F+N A ++G +++
Sbjct: 299 TGKMVKTPMKPKFWCDKCQESITNVEARYKLHVRVMDQTAEIKLMVFENNATKLIGKSSE 358
Query: 754 EV 755
E+
Sbjct: 359 EL 360
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 125/313 (39%), Gaps = 61/313 (19%)
Query: 4 APANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN--ID 61
+P K+ + Y M+F H+T VI C D V + SV + + S DEN ID
Sbjct: 83 SPLTGKYKISSLTYRMAFNHNTDVIKC--DPVSD--SVFLDLADFEGVKTESYDENVLID 138
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE-TFDA------S 114
+LG + ++ + + K K + + D S + TLWG AE F A
Sbjct: 139 ILGQVVRVGKVDEIMAQ--NKPNKKLEFQIRDASNERLPCTLWGVFAEKVFSALKSIKHD 196
Query: 115 NKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNP-DIPECHKLQGWFSTQTNTRFEPVSQR 173
K V+ ++ A+++ F+G +S + +NP +PE S
Sbjct: 197 EKTVVLIRYAKINNFKGNHAFDVSE---VIINPVHVPEVELFVK-------------SLP 240
Query: 174 TGGMGGGAAGNLL---LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCN 230
+ G+ N + L++ Q + LG I + Y CP CN
Sbjct: 241 SDGLALTIQDNYVNRDLIKVGQWRILG-----------SIFAIDTDWGWFYFGCPK--CN 287
Query: 231 KK--VIDQNNGM-----------YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQN 277
+K ++ ++ + C+KC + R L V + D T + + +F+N
Sbjct: 288 RKTELVKESTSTGKMVKTPMKPKFWCDKCQESITNVEARYKLHVRVMDQTAEIKLMVFEN 347
Query: 278 EAESILGVTAQEV 290
A ++G +++E+
Sbjct: 348 NATKLIGKSSEEL 360
>gi|302792122|ref|XP_002977827.1| hypothetical protein SELMODRAFT_417572 [Selaginella moellendorffii]
gi|300154530|gb|EFJ21165.1| hypothetical protein SELMODRAFT_417572 [Selaginella moellendorffii]
Length = 372
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/311 (22%), Positives = 134/311 (43%), Gaps = 36/311 (11%)
Query: 33 DEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLV 92
DE P + + + + D +DV+G+ I ++ VT + + KR + L
Sbjct: 71 DEDAMFPRIVLAKTSILSACQKERDSFVDVVGIVIWIGTIT-VTSRDSGTFVKKRTLCLG 129
Query: 93 DQSQASVTMTLWGKEAET--------FDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLS 144
D S SV + LW +AE D+ +P+I VK +VS++ G ++ +S++L
Sbjct: 130 DDSGHSVDLCLWDLKAEEEGSYIQERIDSGVQPIICVKGGKVSDYNGKSLSAIGVSTIL- 188
Query: 145 LNPDIPECHKLQGWFSTQTN-TRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKAD 203
+ ++ L+ W + N T F +S + R+I + + ++
Sbjct: 189 IELEMEAVADLREWMTLYYNVTNFIHLSTSSS-------------RQIVSCTTTLSEISN 235
Query: 204 YCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLIL 259
V ++ + Y AC ++ C KK +G + C CN ++ L
Sbjct: 236 I--VIATVKEMKTDEFYYNACINVVNARQCGKKTTQTADGWF-CSYCNIVSANMEFKYAL 292
Query: 260 PVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-STEDHPALKKAL----FTQYIFRLRA 314
+ I D ++ +W FQ + I+G++A+E+ E++PA + Y F++ +
Sbjct: 293 KMCIEDSSSHMWAIAFQEATQEIVGMSAKELATMRDENYPAFSLLIDGIRSKIYKFKIWS 352
Query: 315 KLEHYNGTKKI 325
KLE Y +K+
Sbjct: 353 KLEKYQDMEKL 363
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 84/362 (23%), Positives = 145/362 (40%), Gaps = 60/362 (16%)
Query: 480 FSIDLLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCT-LKPANKKFSSINNDYEMS 537
S D++D G EIR +D D I + VY S ++ +N+ ++ +E+
Sbjct: 1 MSFDVVDVQGTEIRIIGSDDCALVLSDKIVQGTVYSFSGSGGIRHSNQAYTPFEATWEIQ 60
Query: 538 FTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTN 597
+ED + P + + + + D +DV+G+ I ++ VT + +
Sbjct: 61 ANKGMEFTALDEDAM--FPRIVLAKTSILSACQKERDSFVDVVGIVIWIGTIT-VTSRDS 117
Query: 598 QKTYMKRDITLVDQSQASVTMTLWGKEAET--------FDASNKPVIAVKAARVSEFQGN 649
KR + L D S SV + LW +AE D+ +P+I VK +VS++ G
Sbjct: 118 GTFVKKRTLCLGDDSGHSVDLCLWDLKAEEEGSYIQERIDSGVQPIICVKGGKVSDYNGK 177
Query: 650 LLLMREIQDQ--QLGMGDKAD-------YCSVRGIIQVFRGSN-------TT-------- 685
L + +L M AD Y +V I + S+ TT
Sbjct: 178 SLSAIGVSTILIELEMEAVADLREWMTLYYNVTNFIHLSTSSSRQIVSCTTTLSEISNIV 237
Query: 686 -------------YKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMI 728
Y AC ++ C KK +G + C CN ++ L + I
Sbjct: 238 IATVKEMKTDEFYYNACINVVNARQCGKKTTQTADGWF-CSYCNIVSANMEFKYALKMCI 296
Query: 729 GDWTNSVWVTLFQNEAESILGVTAQEVGE-STEDHPALKKAL----FTQYIFRLRAKLEH 783
D ++ +W FQ + I+G++A+E+ E++PA + Y F++ +KLE
Sbjct: 297 EDSSSHMWAIAFQEATQEIVGMSAKELATMRDENYPAFSLLIDGIRSKIYKFKIWSKLEK 356
Query: 784 YN 785
Y
Sbjct: 357 YQ 358
>gi|302804959|ref|XP_002984231.1| hypothetical protein SELMODRAFT_423315 [Selaginella moellendorffii]
gi|300148080|gb|EFJ14741.1| hypothetical protein SELMODRAFT_423315 [Selaginella moellendorffii]
Length = 241
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 102/229 (44%), Gaps = 19/229 (8%)
Query: 86 KRDITLVDQSQASVTMTLWGKEAET--------FDASNKPVIAVKAARVSEFQGGKTLSL 137
KR + L D S SV + LW +AE D+ +P+I VK +VS++ G ++
Sbjct: 3 KRTLCLGDDSGHSVDLCLWDLKAEEESSYIQERIDSGVQPIICVKGGKVSDYNGKSLSAI 62
Query: 138 SMSSVLSLNPDIPECHKLQGWFSTQTN-TRFEPVSQRTGGMGGGAAGNLLLMREIQDQQL 196
+S++L + P++ L+ W + N T F +S + L EI + QL
Sbjct: 63 GVSTIL-IEPEMEAVADLREWMTLYYNITNFIHLSTSSSRQTVSCTTTL---SEISNMQL 118
Query: 197 GMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNT 252
+ + V ++ + + Y AC + C KK +G + C CN E
Sbjct: 119 KVLKSSPIYRVIATVKEMKTNEFYYNACINVMNAWQCGKKTSRTADGWF-CSYCNIESAN 177
Query: 253 FTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-STEDHPAL 300
++ L + I D ++ VW FQ A+ I+G+ A+++ E++P
Sbjct: 178 MEFKYALKMCIEDSSSHVWAIAFQEAAQEIVGIPAKKLATMRDENYPTF 226
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 82/225 (36%), Gaps = 63/225 (28%)
Query: 603 KRDITLVDQSQASVTMTLWGKEAET--------FDASNKPVIAVKAARVSEFQGNLL--- 651
KR + L D S SV + LW +AE D+ +P+I VK +VS++ G L
Sbjct: 3 KRTLCLGDDSGHSVDLCLWDLKAEEESSYIQERIDSGVQPIICVKGGKVSDYNGKSLSAI 62
Query: 652 ----------------------------------------------LMREIQDQQLGMGD 665
+ EI + QL +
Sbjct: 63 GVSTILIEPEMEAVADLREWMTLYYNITNFIHLSTSSSRQTVSCTTTLSEISNMQLKVLK 122
Query: 666 KADYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYR 721
+ V ++ + + Y AC + C KK +G + C CN E ++
Sbjct: 123 SSPIYRVIATVKEMKTNEFYYNACINVMNAWQCGKKTSRTADGWF-CSYCNIESANMEFK 181
Query: 722 LILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-STEDHPAL 765
L + I D ++ VW FQ A+ I+G+ A+++ E++P
Sbjct: 182 YALKMCIEDSSSHVWAIAFQEAAQEIVGIPAKKLATMRDENYPTF 226
>gi|215687058|dbj|BAG90904.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215694034|dbj|BAG89233.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 192
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 12/190 (6%)
Query: 443 HPIVS-LSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDL--LDESG-EIRATMFND 498
H ++S L P + I ARV+ R+ N+ + DL LDE G M+
Sbjct: 3 HALISQLYPGDSDKKILARVSRLWHFRDLND---DTNILHTDLVLLDEVGNSTHVQMYRG 59
Query: 499 ECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV 558
+I + VYYI + T+K AN+ + ++ND+ + F+ TT+ C D + P++
Sbjct: 60 AIEVLKPLIHEGNVYYIESFTVKDANRTYRPVSNDFMILFSKWTTLEEC-IDIPADFPAI 118
Query: 559 KYCFVPLKTIAEISPDENI---DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQAS 615
+ P + I + D+NI D++GV + + S+V ++ +KR + + D S ++
Sbjct: 119 TFSLTPFQEIPSLV-DKNIFYVDIMGVITEISSTSTVRPRSRDADSLKRTLQICDASNST 177
Query: 616 VTMTLWGKEA 625
+ +TLWG +
Sbjct: 178 LPVTLWGDRS 187
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI---DV 62
AN+ + ++ND+ + F+ TT+ C D + P++ + P + I + D+NI D+
Sbjct: 84 ANRTYRPVSNDFMILFSKWTTLEEC-IDIPADFPAITFSLTPFQEIPSLV-DKNIFYVDI 141
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA 108
+GV + + S+V ++ +KR + + D S +++ +TLWG +
Sbjct: 142 MGVITEISSTSTVRPRSRDADSLKRTLQICDASNSTLPVTLWGDRS 187
>gi|147857506|emb|CAN80780.1| hypothetical protein VITISV_011466 [Vitis vinifera]
Length = 280
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 104/236 (44%), Gaps = 28/236 (11%)
Query: 96 QASVTMTLWGKEA-----ETFDASNK-PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDI 149
+ +V ++LW A E D ++K P++A+K+ + K +S S
Sbjct: 35 KKTVVVSLWNDHATNVGQELLDNADKFPIVAIKSLK-XHANKKKLISWYDS--------- 84
Query: 150 PECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRG 209
EC +G + P S+ GG+ + L + LG DK + S+R
Sbjct: 85 -EC---KGASMASIGSDISPSSK--GGVRSMYYDRVSLSHVTSNPSLG-EDKPSFFSIRA 137
Query: 210 IIQVFRGSNTT-YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTN 268
I + T Y+AC + CNKKV D Y CE C K + + R I+ V + D +
Sbjct: 138 YISFIKPDQTMWYRACKT--CNKKVTDAIGSEYWCEGCQKNDDECSLRYIMVVKVSDASG 195
Query: 269 SVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKK 324
W++LF ++AE I G +A E+ + LK+A++ +FR+ Y K+
Sbjct: 196 EAWLSLFNDQAERIFGCSADELDKLKSQK--LKEAIWVPQLFRISVAQHEYMNEKR 249
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 665 DKADYCSVRGIIQVFRGSNTT-YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLI 723
DK + S+R I + T Y+AC + CNKKV D Y CE C K + + R I
Sbjct: 128 DKPSFFSIRAYISFIKPDQTMWYRACKT--CNKKVTDAIGSEYWCEGCQKNDDECSLRYI 185
Query: 724 LPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAKLEH 783
+ V + D + W++LF ++AE I G +A E+ + LK+A++ +FR+
Sbjct: 186 MVVKVSDASGEAWLSLFNDQAERIFGCSADELDKLKSQK--LKEAIWVPQLFRISVAQHE 243
Query: 784 Y 784
Y
Sbjct: 244 Y 244
>gi|321449556|gb|EFX61951.1| hypothetical protein DAPPUDRAFT_337759 [Daphnia pulex]
Length = 545
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 57/82 (69%), Gaps = 2/82 (2%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSA--TNRSVLIILEL 382
I DG ++ +LATQLN +I + L FTI+++K+++V+ V++ +A + ++I+L++
Sbjct: 49 ISDGKYSYAYGILATQLNHLIWNAQLENFTIIRVKKFVVNKVATEAAGKDEKKIMILLDV 108
Query: 383 NIIKPGTEIGFKIGNPQPLNTN 404
I PG+E+G KIGNPQ LN N
Sbjct: 109 EPIVPGSEVGEKIGNPQTLNDN 130
>gi|391329299|ref|XP_003739112.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Metaseiulus occidentalis]
Length = 214
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Query: 457 IKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYIS 516
++ RVT+KTPI+EW+ GKLFS + DE+ I + D+ + I+ + Y I+
Sbjct: 53 LEGRVTSKTPIKEWSKNGKEGKLFSFLMADETARISVIVSGDKTDEVFSTIQVNHCYRIT 112
Query: 517 NCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN 576
KP N FSS +++ E++ + + + E E ++P + + +I I +
Sbjct: 113 GFKPKPVNPHFSSTDHECEVTLSKISKI---KEIERDDIPQTQSLCSSIASILNIEKNCL 169
Query: 577 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
ID+ + D + ++T + + K+ LVD S+ V++ LW
Sbjct: 170 IDLTAILFDLLPVQNITCR-DGSIQKKQTALLVDDSKKIVSLDLW 213
>gi|297736060|emb|CBI24098.3| unnamed protein product [Vitis vinifera]
Length = 181
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 200 DKADYCSVRGIIQVFRGSNTT-YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLI 258
DK + S+R I + T Y+AC + CNKKV D Y CE C K + + R I
Sbjct: 20 DKPSFFSIRAYISFIKPDQTMWYRACKT--CNKKVTDAIGSEYWCEGCQKNDDECSLRYI 77
Query: 259 LPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-------GESTEDHPALKKALFTQYIFR 311
+ V + D + W++LF ++AE I G +A E+ GE LK+A++ +FR
Sbjct: 78 MVVKVSDASGEAWLSLFNDQAERIFGCSADELDKLKSQEGEENLFQQKLKEAIWVPQLFR 137
Query: 312 LRAKLEHYNGTKK 324
+ Y K+
Sbjct: 138 ISVAQHEYMNEKR 150
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 665 DKADYCSVRGIIQVFRGSNTT-YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLI 723
DK + S+R I + T Y+AC + CNKKV D Y CE C K + + R I
Sbjct: 20 DKPSFFSIRAYISFIKPDQTMWYRACKT--CNKKVTDAIGSEYWCEGCQKNDDECSLRYI 77
Query: 724 LPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-------GESTEDHPALKKALFTQYIFR 776
+ V + D + W++LF ++AE I G +A E+ GE LK+A++ +FR
Sbjct: 78 MVVKVSDASGEAWLSLFNDQAERIFGCSADELDKLKSQEGEENLFQQKLKEAIWVPQLFR 137
Query: 777 LRAKLEHY 784
+ Y
Sbjct: 138 ISVAQHEY 145
>gi|7529251|emb|CAB86481.1| putative protein [Arabidopsis thaliana]
Length = 269
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 15/192 (7%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNN-ARGSGKLFSIDLLDESGE-IRATMFNDECN 501
P+ SL PY+N W I+ ++ + W + +G+ + L+DE+G+ + A + ++
Sbjct: 11 PLKSLKPYKNAWRIQVKL-----LHVWRQYSVKAGESIEMILVDEAGDKMYAAVRREQIK 65
Query: 502 RFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC 561
+F + + I+ TL P + K+ + Y++ F TTV PC D V + ++
Sbjct: 66 KFERCLTEGVWKIITTITLNPTSGKYRISDLKYKIGFVFKTTVSPC--DSVSD--ALFLS 121
Query: 562 FVPLKTIAEISPDENI--DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
I S + NI DV+G +D +E+ + N K K D L DQ + T
Sbjct: 122 LAKFDVILSGSANSNILHDVMGQVVDRSEIQDLNA--NNKPTKKIDFHLKDQHDTRLACT 179
Query: 620 LWGKEAETFDAS 631
LWGK AE D +
Sbjct: 180 LWGKYAEIVDQA 191
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 15/156 (9%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI--DV 62
P + K+ + Y++ F TTV PC D V + ++ I S + NI DV
Sbjct: 86 PTSGKYRISDLKYKIGFVFKTTVSPC--DSVSD--ALFLSLAKFDVILSGSANSNILHDV 141
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKP----- 117
+G +D +E+ + N K K D L DQ + TLWGK AE D + +
Sbjct: 142 MGQVVDRSEIQDLNA--NNKPTKKIDFHLKDQHDTRLACTLWGKYAEIVDQACQESTDGI 199
Query: 118 -VIAVKAARVSEFQGGKTLSLSMS-SVLSLNPDIPE 151
V ++ A+++ + +++S S S + ++P + E
Sbjct: 200 VVCLIRFAKINLYNDSRSVSNSFDVSQVFVDPTLAE 235
>gi|410721996|ref|ZP_11361314.1| single-stranded DNA-binding protein [Methanobacterium sp.
Maddingley MBC34]
gi|410597945|gb|EKQ52546.1| single-stranded DNA-binding protein [Methanobacterium sp.
Maddingley MBC34]
Length = 791
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/351 (23%), Positives = 158/351 (45%), Gaps = 62/351 (17%)
Query: 459 ARVTNKTPIREWNNARGS-GKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISN 517
RV N E+ G+ G + + ++ D+SG +R ++++++ H+M E D
Sbjct: 428 GRVVNLYEPNEFQRDDGTTGMVRTAEIADDSGMVRVSLWDNKAE--HEMKEGD------- 478
Query: 518 CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK------YCFVPLKTIAEI 571
TLK N + + ++S ++ ++ E+E+ ++PS+K Y +K +AE
Sbjct: 479 -TLKIENARTRLGDYQVDLSVGKTSRLLEPTEEEIKDLPSLKDVESMIYQRKKIKELAE- 536
Query: 572 SPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG-------KE 624
D ++ + G + E + T K++ + R + + D + V +LW KE
Sbjct: 537 -GDRDVSIFGRILSMGEPTQFT-KSDGSAGIVRSMDIADDT-GVVRASLWDDKANTSFKE 593
Query: 625 AETFDASNKPVIAVKAARV-----------------------SEFQGNLLLMREIQDQQL 661
E N P + ++ RV E +G L + I D +
Sbjct: 594 GEAVKIEN-PRVNLRNDRVELSVGRTTIITKPDEEETSVPSLDEIEGKLYPSKNIGD--I 650
Query: 662 GMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYR 721
GD++ V G + RG+ ++ CP+ CNK+V +G Y C+ C ++
Sbjct: 651 EEGDQS--IKVTGEVVDIRGNKILFEMCPN--CNKRVNWAEDG-YICDICGEKIEKPNML 705
Query: 722 LILPVMIGDWTNSVWVTLFQNEAESILGVT---AQEVGESTEDHPALKKAL 769
+I+ +M+ D T ++ +T F+ AE +L +T A+E+ +T D +L++ +
Sbjct: 706 MIISLMLEDDTGTISITFFRKAAEEVLDMTTAEAEEIIATTGDEGSLEEKV 756
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 156/346 (45%), Gaps = 65/346 (18%)
Query: 16 DY--EMSFTHSTTVIPCNEDEVGNMPSVK------YCFVPLKTIAEISPDENIDVLGVCI 67
DY ++S ++ ++ E+E+ ++PS+K Y +K +AE D ++ + G +
Sbjct: 491 DYQVDLSVGKTSRLLEPTEEEIKDLPSLKDVESMIYQRKKIKELAE--GDRDVSIFGRIL 548
Query: 68 DAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVS 127
E + T K++ + R + + D + V +LW +A T + V ++ RV+
Sbjct: 549 SMGEPTQFT-KSDGSAGIVRSMDIADDT-GVVRASLWDDKANTSFKEGEAV-KIENPRVN 605
Query: 128 EFQGGKTLSLSMSSVLSLNPD-----IPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAA 182
LS+ +++++ PD +P +++G + P S+ G + G
Sbjct: 606 LRNDRVELSVGRTTIIT-KPDEEETSVPSLDEIEG--------KLYP-SKNIGDIEEG-- 653
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
DQ + V G + RG+ ++ CP+ CNK+V +G Y
Sbjct: 654 ----------DQSI---------KVTGEVVDIRGNKILFEMCPN--CNKRVNWAEDG-YI 691
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVT---AQEVGESTEDHPA 299
C+ C ++ +I+ +M+ D T ++ +T F+ AE +L +T A+E+ +T D +
Sbjct: 692 CDICGEKIEKPNMLMIISLMLEDDTGTISITFFRKAAEEVLDMTTAEAEEIIATTGDEGS 751
Query: 300 LKKA---LFTQYIFRL-RAKLEHYNGTKKIPDGVNINSFAMLATQL 341
L++ L ++I + A + YN + V +N+ M+ +L
Sbjct: 752 LEEKVGDLVGRHITVIADASFDEYN------EEVRLNARKMVDVKL 791
>gi|391327595|ref|XP_003738283.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 296
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 99/213 (46%), Gaps = 8/213 (3%)
Query: 443 HP--IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDEC 500
HP I LS + I+ RV +++PIR W+ G +FS + D S +I + C
Sbjct: 35 HPKLIKDLSLERVGGMIQGRVESESPIRSWSREGAEGIIFSFIVNDSSSDINVVASGEIC 94
Query: 501 NRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVG-NMPSVK 559
H+ I K Y IS LK N +++ ++ E+ T + V +G N+P
Sbjct: 95 AELHEKISVGKCYVISAFKLKKINPQYNITSHQLEIQLTKISKVTEI----IGINLPENT 150
Query: 560 YCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
F+ L I + + +D+LG+ + A+ + + + + K+++ +VD ++ VT++
Sbjct: 151 TNFITLAEIGSSAVNSMVDILGIIHEVADEQNFMCR-DGTSRKKKNVRIVDDTKKIVTLS 209
Query: 620 LWGKEAETFDASNKPVIAVKAARVSEFQGNLLL 652
LW + A+ + +++ + F +L
Sbjct: 210 LWSEHADILNGMESQCVSIHNVVIRVFNMKKVL 242
Score = 44.3 bits (103), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 37 NMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ 96
N+P F+ L I + + +D+LG+ + A+ + + + + K+++ +VD ++
Sbjct: 145 NLPENTTNFITLAEIGSSAVNSMVDILGIIHEVADEQNFMCR-DGTSRKKKNVRIVDDTK 203
Query: 97 ASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQ 156
VT++LW + A+ + +++ + F K L+ + S+ L + +LQ
Sbjct: 204 KIVTLSLWSEHADILNGMESQCVSIHNVVIRVFNMKKVLTTTSSTSAKLAVITADSERLQ 263
Query: 157 GWFSTQ 162
W++ +
Sbjct: 264 KWWNEE 269
>gi|297743679|emb|CBI36562.3| unnamed protein product [Vitis vinifera]
Length = 181
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 200 DKADYCSVRGIIQVFRGSNTT-YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLI 258
DK + S+R I + T Y+AC + CNKKV D Y CE C K + + R I
Sbjct: 20 DKPSFFSIRAYISFIKPDQTMWYRACKT--CNKKVTDAIGSGYWCEGCQKNDDECSLRYI 77
Query: 259 LPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-------GESTEDHPALKKALFTQYIFR 311
+ V + D + W++LF ++AE I G +A E+ GE LK+A++ +FR
Sbjct: 78 MVVKVSDASGEAWLSLFNDQAERIFGCSADELDKLKSQEGEENLFQQKLKEAIWVPQLFR 137
Query: 312 LRAKLEHYNGTKK 324
+ Y K+
Sbjct: 138 ISVAQHEYMNEKR 150
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 665 DKADYCSVRGIIQVFRGSNTT-YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLI 723
DK + S+R I + T Y+AC + CNKKV D Y CE C K + + R I
Sbjct: 20 DKPSFFSIRAYISFIKPDQTMWYRACKT--CNKKVTDAIGSGYWCEGCQKNDDECSLRYI 77
Query: 724 LPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-------GESTEDHPALKKALFTQYIFR 776
+ V + D + W++LF ++AE I G +A E+ GE LK+A++ +FR
Sbjct: 78 MVVKVSDASGEAWLSLFNDQAERIFGCSADELDKLKSQEGEENLFQQKLKEAIWVPQLFR 137
Query: 777 LRAKLEHY 784
+ Y
Sbjct: 138 ISVAQHEY 145
>gi|322783921|gb|EFZ11105.1| hypothetical protein SINV_13954 [Solenopsis invicta]
Length = 301
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 33/184 (17%)
Query: 420 NGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
+G++G + A ++ + T PI L+ ++ IKAR K+ ++ WNN R GK
Sbjct: 123 DGTDGSTDGTADSTIPTSLDIYTTPIAKLNG-RDSGVIKAREIEKSQVKLWNNNRRRGKY 181
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMI-------EKD--------------------KV 512
F I L+D SG+I T F D ++F ++I E D V
Sbjct: 182 FFITLIDASGKISCTAFQDMVDKFFNLIVVSVPCAESDVSDDRANLPFQPFHLILQVGNV 241
Query: 513 YYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEIS 572
Y++S C LK A+K+F++ N+YE+ T + PC++ ++P++ + F TI +I
Sbjct: 242 YHVSRCHLKKADKRFNTTKNNYELIVHFFTRLEPCHDHY--SVPTIWFNF---STINQIK 296
Query: 573 PDEN 576
+N
Sbjct: 297 SKKN 300
>gi|50838977|gb|AAT81738.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108708958|gb|ABF96753.1| hypothetical protein LOC_Os03g31560 [Oryza sativa Japonica Group]
Length = 1500
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 101/203 (49%), Gaps = 23/203 (11%)
Query: 457 IKARVTNKTPIREWN--NARGSGKLFSIDL--LDESG-EIRATMFNDECNRFHDMIEKDK 511
I ARV+ R WN + K+F DL LDE G I A ++ + +++++K
Sbjct: 996 ILARVS-----RLWNFTDLNNHTKIFHTDLVLLDEMGTSIHAQIYPPITEKMKPLLKEEK 1050
Query: 512 VYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVG---NMPSVKYCFVPLKTI 568
VYYI + T++ AN+ + + N+ + F+ TT+ E+ + + P + + P + +
Sbjct: 1051 VYYIDSFTVRAANRTYRPVANNLMILFSKWTTL----EEHINVPPHFPGITFSLTPFEDV 1106
Query: 569 AEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF 628
+ + V+G ++++ K+ +KR + + D S +++ +TLWG+ A +F
Sbjct: 1107 PSLVEKNSFYVVGA------VTTIRPKSRNAESLKRTLQIRDASNSTLPVTLWGERATSF 1160
Query: 629 DASNKPVIAVKAARVSEFQGNLL 651
DA++ A+V F G L+
Sbjct: 1161 DANDIYNAGQTQAQVVVFVGTLV 1183
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 84/177 (47%), Gaps = 26/177 (14%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVG---NMPSVKYCFVPLKTIAEISPDENIDV 62
AN+ + + N+ + F+ TT+ E+ + + P + + P + + + + V
Sbjct: 1062 ANRTYRPVANNLMILFSKWTTL----EEHINVPPHFPGITFSLTPFEDVPSLVEKNSFYV 1117
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN------- 115
+G ++++ K+ +KR + + D S +++ +TLWG+ A +FDA++
Sbjct: 1118 VGA------VTTIRPKSRNAESLKRTLQIRDASNSTLPVTLWGERATSFDANDIYNAGQT 1171
Query: 116 -KPVIAVKAARVSEFQG-GKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPV 170
V+ V +++G G TL+ S +N +IPE +L FST F+P+
Sbjct: 1172 QAQVVVFVGTLVKDYRGLGLTLTGSSPCKWYINLNIPEVAELNESFSTN----FQPI 1224
>gi|302756891|ref|XP_002961869.1| hypothetical protein SELMODRAFT_77809 [Selaginella moellendorffii]
gi|300170528|gb|EFJ37129.1| hypothetical protein SELMODRAFT_77809 [Selaginella moellendorffii]
Length = 217
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 22/214 (10%)
Query: 116 KPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTN-TRFEPVSQRT 174
+P+I VK +VS++ G L++ +S++L + P++ L+ W + N T F +S
Sbjct: 10 QPIICVKGGKVSDYNGKSLLAIGVSTIL-IEPEMEAVADLREWMTLYYNITNFIHLS--- 65
Query: 175 GGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCN 230
+ EI QL + + V ++ + Y AC +Q C
Sbjct: 66 -------VSCTTTLSEISSMQLKVLESFPIYRVIATMKEMKTDEFYYNACINVVNAQQCG 118
Query: 231 KKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 290
+K NG + C CN EF ++ L + I D ++ VW FQ A+ I+G+ A+E+
Sbjct: 119 RKTTQTANGWF-CSYCNIEFANMEFKYALKMCIKDSSSHVWAIAFQEVAQEIVGMPAKEL 177
Query: 291 GE-STEDHPALKKAL----FTQYIFRLRAKLEHY 319
E++ AL + Y F++ +KLE Y
Sbjct: 178 ATMRYENYLALSLHIDGIRSKIYNFKIWSKLEKY 211
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 10/141 (7%)
Query: 653 MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRC 708
+ EI QL + + V ++ + Y AC +Q C +K NG + C
Sbjct: 72 LSEISSMQLKVLESFPIYRVIATMKEMKTDEFYYNACINVVNAQQCGRKTTQTANGWF-C 130
Query: 709 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-STEDHPALKK 767
CN EF ++ L + I D ++ VW FQ A+ I+G+ A+E+ E++ AL
Sbjct: 131 SYCNIEFANMEFKYALKMCIKDSSSHVWAIAFQEVAQEIVGMPAKELATMRYENYLALSL 190
Query: 768 AL----FTQYIFRLRAKLEHY 784
+ Y F++ +KLE Y
Sbjct: 191 HIDGIRSKIYNFKIWSKLEKY 211
>gi|124506649|ref|XP_001351922.1| replication factor A-related protein, putative [Plasmodium
falciparum 3D7]
gi|23504949|emb|CAD51733.1| replication factor A-related protein, putative [Plasmodium
falciparum 3D7]
Length = 484
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 94/431 (21%), Positives = 176/431 (40%), Gaps = 103/431 (23%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNRF 503
I ++ Y +KW IKA+V NKT + + N + FSID+ D G+ I + +++
Sbjct: 10 ISQITTYVSKWIIKAKVVNKTKLSTFKN---NNSFFSIDVTDVHGDSISCKFWGSSADKW 66
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP-SVKYCF 562
++IE KVY S + AN K++++ + YE++F + + +D G + K
Sbjct: 67 FNVIELKKVYIFSKGRVSIANPKYNTVKHKYELTFNEDSEIHEVKDD--GEIKIQKKISL 124
Query: 563 VPLKTIAEISPDE---NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
V L+ I +I+ E D++G+ +S++ K K++I +VD ++ S ++
Sbjct: 125 VNLRDI-KIATKETPFTADLIGIVKHIGTVSNLKTKQGNDI-AKQNIIIVDDTKHSFEIS 182
Query: 620 LWGK----------EAETFDASNKPV--------------------------IAVKAARV 643
W E E + +N + + K A++
Sbjct: 183 FWDSNVNLIKEEIVENEIYIFTNINIRNWNDMKNGTFGVTSSIEKMENLNDELKAKCAKI 242
Query: 644 SEFQGN------LLLMREIQ--------DQQLGMGDKAD--------YCSVRGIIQVFRG 681
S++ N MR I D+ + D +D Y + I +++
Sbjct: 243 SQWYNNSGKYEQFTNMRNILSNDVTQTPDKHYSISDVSDVLSKISGTYTLIGRIKRIYWK 302
Query: 682 SNTT-----YKACPSQDCNKKVI---------------DQNNGMYRCEKCN----KEFNT 717
S Y AC C KK++ +++N +Y C C+ K F
Sbjct: 303 SKENEHRFYYPAC--MKCKKKLLSSGHDNNMDNEFDNPEEDNIVYSCMNCDENNVKPFYN 360
Query: 718 FTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE---VGESTEDHPALKKALFTQYI 774
+T+ + D++ S+ + F +E ++LG A+E + E T D+ L+ +Y
Sbjct: 361 YTFNFLFM----DFSGSIILRAFSDEGYNLLGKKAEELKNLDEDTLDYLFNYDFLYKEYK 416
Query: 775 FRLRAKLEHYN 785
+R + YN
Sbjct: 417 IVVRVNQKAYN 427
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 71/370 (19%), Positives = 152/370 (41%), Gaps = 73/370 (19%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP-SVKYCFVPLKTIAEISPDEN---ID 61
AN K++++ + YE++F + + +D G + K V L+ I +I+ E D
Sbjct: 86 ANPKYNTVKHKYELTFNEDSEIHEVKDD--GEIKIQKKISLVNLRDI-KIATKETPFTAD 142
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK----------EAETF 111
++G+ +S++ K K++I +VD ++ S ++ W E E +
Sbjct: 143 LIGIVKHIGTVSNLKTKQGNDI-AKQNIIIVDDTKHSFEISFWDSNVNLIKEEIVENEIY 201
Query: 112 DASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDI-PECHKLQGWFSTQTNTRFEPV 170
+N + + G ++ S+ + +LN ++ +C K+ W++ ++E
Sbjct: 202 IFTNINIRNWNDMK----NGTFGVTSSIEKMENLNDELKAKCAKISQWYNNSG--KYEQF 255
Query: 171 SQRTGGMGGGAAGNLLLMREIQDQQLGMGDKAD--------YCSVRGIIQVFRGSNTT-- 220
+ + + D+ + D +D Y + I +++ S
Sbjct: 256 TNMRNILSNDVT-------QTPDKHYSISDVSDVLSKISGTYTLIGRIKRIYWKSKENEH 308
Query: 221 ---YKACPSQDCNKKVI---------------DQNNGMYRCEKCN----KEFNTFTYRLI 258
Y AC C KK++ +++N +Y C C+ K F +T+ +
Sbjct: 309 RFYYPAC--MKCKKKLLSSGHDNNMDNEFDNPEEDNIVYSCMNCDENNVKPFYNYTFNFL 366
Query: 259 LPVMIGDWTNSVWVTLFQNEAESILGVTAQE---VGESTEDHPALKKALFTQYIFRLRAK 315
D++ S+ + F +E ++LG A+E + E T D+ L+ +Y +R
Sbjct: 367 FM----DFSGSIILRAFSDEGYNLLGKKAEELKNLDEDTLDYLFNYDFLYKEYKIVVRVN 422
Query: 316 LEHYNGTKKI 325
+ YNG +++
Sbjct: 423 QKAYNGIERV 432
>gi|391331921|ref|XP_003740388.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 217
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 477 GKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEM 536
GK ++D S +I+ FND C +F +++++ + Y I + AN F++ ++ E+
Sbjct: 2 GKCSPSQVVDASTDIQIVAFNDNCLQFSEILQEHQEYDIEGFACRQANPIFNTTSSKLEI 61
Query: 537 SFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKT 596
T + N + + +V + + ++ +DV GV I + + T K
Sbjct: 62 VLNKGTKIRALNRATL-RIAEKSPNYVSFSELQSMKENDIVDVCGVIIHVSPVEEFTRKR 120
Query: 597 NQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLL 652
+ K +KR++ +VD+ + +T+ LW + T + K ++V+ R++ F+GNL L
Sbjct: 121 DGKPIVKRELRIVDEDRKILTINLWNERTNT-ELVEKVAVSVRHGRINIFRGNLSL 175
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 64/129 (49%), Gaps = 2/129 (1%)
Query: 45 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 104
+V + + ++ +DV GV I + + T K + K +KR++ +VD+ + +T+ LW
Sbjct: 86 YVSFSELQSMKENDIVDVCGVIIHVSPVEEFTRKRDGKPIVKRELRIVDEDRKILTINLW 145
Query: 105 GKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTN 164
+ T + K ++V+ R++ F+G +L+ +S + + KL W+ T+
Sbjct: 146 NERTNT-ELVEKVAVSVRHGRINIFRGNLSLNCESASKIDFDLGNERLLKLSQWWEN-TD 203
Query: 165 TRFEPVSQR 173
+R + R
Sbjct: 204 SRLPATTLR 212
>gi|391348893|ref|XP_003748675.1| PREDICTED: uncharacterized protein LOC100908191 [Metaseiulus
occidentalis]
Length = 292
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 98/209 (46%), Gaps = 14/209 (6%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
I+ ++ Q ++ RV +KTP R W G++FS ++D + +I + ++C +
Sbjct: 40 IIDITMDQVGGQVQGRVKSKTPARSWQRDGSRGEIFSFIVVDSTAQINVIVAGEDCENVY 99
Query: 505 DMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTV--IPCNEDEVGNMPSVKYCF 562
I + Y +S KP N K+ ++ +E+ + + + +P N+ N+ S+
Sbjct: 100 KQINVGECYKLSAFRQKPCNPKYKVTDHHFELQLSKISKIEEVPGNDLPRENVTSI---- 155
Query: 563 VPLKTIAEI---SPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
TIAEI S EN+ + + + +E + + + + T K++ L D ++ +T+
Sbjct: 156 ----TIAEIKSSSLKENVSINFIVYEVSEPQTFSCRDGE-TRQKQNDVLEDDTKRIITLN 210
Query: 620 LWGKEAETFDASNKPVIAVKAARVSEFQG 648
LW + D I ++ V E++G
Sbjct: 211 LWSENVGELDGQEGRAINIENVSVREYKG 239
>gi|241679380|ref|XP_002412649.1| replication factor A 1, rfa1, putative [Ixodes scapularis]
gi|215506451|gb|EEC15945.1| replication factor A 1, rfa1, putative [Ixodes scapularis]
Length = 217
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 59/205 (28%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNR- 502
PI SL + ++WTI+ARVT+K+ I + + +FS++L DES EI A + ++ C +
Sbjct: 14 PISSLGRFSDRWTIRARVTHKSSI----HPKDGLYMFSVELRDESAEINAMVMSNRCCKW 69
Query: 503 --FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKY 560
F++ I+ +KVYYIS
Sbjct: 70 VGFYEKIQLNKVYYISG------------------------------------------- 86
Query: 561 CFVPLKTIAEISPDENIDVLGV--CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM 618
+K + + D ID++G+ C + ++ T Q+ +R I + D + V +
Sbjct: 87 ----VKDLQRTNKDTAIDIIGIGECTEKSDDCFEPPYTGQEA--RRTIWITDHT-GRVQL 139
Query: 619 TLWGKEAETFDASNKPVIAVKAARV 643
TL+G + E F+ + V+AVK AR+
Sbjct: 140 TLYGDQVERFNGRHAAVVAVKGARL 164
Score = 43.1 bits (100), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 10/118 (8%)
Query: 43 YCFVPLKTIAEISPDENIDVLGV--CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVT 100
Y +K + + D ID++G+ C + ++ T Q+ +R I + D + V
Sbjct: 82 YYISGVKDLQRTNKDTAIDIIGIGECTEKSDDCFEPPYTGQEA--RRTIWITDHT-GRVQ 138
Query: 101 MTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSV--LSLNPDIPECHKLQ 156
+TL+G + E F+ + V+AVK AR+ LSL M + +NPD+P L+
Sbjct: 139 LTLYGDQVERFNGRHAAVVAVKGARLGV---SDELSLHMCRWGHIEVNPDLPAADSLR 193
>gi|302825524|ref|XP_002994373.1| hypothetical protein SELMODRAFT_4831 [Selaginella moellendorffii]
gi|300137728|gb|EFJ04565.1| hypothetical protein SELMODRAFT_4831 [Selaginella moellendorffii]
Length = 224
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 108/215 (50%), Gaps = 14/215 (6%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNR 502
PI ++ + +W+++ARVT+K + + +G + S+D+ D ES EIR F + R
Sbjct: 2 PIKDINDHCYRWSLRARVTHKGKLVFFETGT-AGCVMSVDVADAESSEIRIVGFGENAKR 60
Query: 503 FHDMIEKDKVYYIS-NCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC 561
IE+ VY S N ++ + ++ +++E+ + T I ED++ +P+V
Sbjct: 61 LSSEIEQGSVYIFSGNSGVQRSKPAYTPYKSNWEIKASK-TMEIKRVEDDL-RIPNVFLK 118
Query: 562 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
+ +++S + +DV+G + + ++++ K + +R + L D+S S+ M LW
Sbjct: 119 RTSVLDASKLSQETFVDVIGGVMWIGQ-TNISPKDSGAFMRRRMLCLSDESSHSIDMCLW 177
Query: 622 GKEAE--------TFDASNKPVIAVKAARVSEFQG 648
+AE +P++ VK R+S++ G
Sbjct: 178 DSKAEDEGSEIEDKLGRGERPIVCVKGGRISDYNG 212
Score = 40.0 bits (92), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 32 EDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITL 91
ED++ +P+V + +++S + +DV+G + + ++++ K + +R + L
Sbjct: 107 EDDL-RIPNVFLKRTSVLDASKLSQETFVDVIGGVMWIGQ-TNISPKDSGAFMRRRMLCL 164
Query: 92 VDQSQASVTMTLWGKEAE--------TFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVL 143
D+S S+ M LW +AE +P++ VK R+S++ GK++S++ S L
Sbjct: 165 SDESSHSIDMCLWDSKAEDEGSEIEDKLGRGERPIVCVKGGRISDYN-GKSISVTGGSTL 223
>gi|413953613|gb|AFW86262.1| hypothetical protein ZEAMMB73_440412 [Zea mays]
Length = 629
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 90/188 (47%), Gaps = 8/188 (4%)
Query: 469 EWNNARGSGKLFSIDLL---DESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANK 525
E+ + + KL D++ +E G A ++ F MI++ VY +S +K AN+
Sbjct: 165 EFYDPQDESKLLHADMVLIDEEGGSAHAQIYPPLAAVFKPMIKEGNVYNVSYVQIKKANR 224
Query: 526 KFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP---LKTIAEISPDENIDVLGV 582
+ ++ND + FT TTV E P + Y P L T+ +I + IDV+G
Sbjct: 225 MYKLVDNDIMIGFTKWTTVEELIEVPPA-FPELVYSLTPFDQLTTLVDIR-EYFIDVIGA 282
Query: 583 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 642
++++++ K Q KR +T+ ++S + + LWG++A +F A + + +
Sbjct: 283 VTMISDVATIRTKMRQTQTAKRSVTIQNESCTPLEVVLWGEQATSFPADQISIAGQDSLQ 342
Query: 643 VSEFQGNL 650
+ F G L
Sbjct: 343 IIIFVGTL 350
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP---LKTIAEISPDENIDV 62
AN+ + ++ND + FT TTV E P + Y P L T+ +I + IDV
Sbjct: 222 ANRMYKLVDNDIMIGFTKWTTVEELIEVPPA-FPELVYSLTPFDQLTTLVDIR-EYFIDV 279
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVK 122
+G ++++++ K Q KR +T+ ++S + + LWG++A +F A +
Sbjct: 280 IGAVTMISDVATIRTKMRQTQTAKRSVTIQNESCTPLEVVLWGEQATSFPADQISIAGQD 339
Query: 123 AARVSEFQGGKTLSLSMSSVLSL----------NPDIPECHKL 155
+ ++ F G TL+ S + SL NP +PE L
Sbjct: 340 SLQIIIFVG--TLARSYAGTTSLTCGSSCKWYVNPQVPEATSL 380
>gi|22831301|dbj|BAC16155.1| DNA binding protein-like [Oryza sativa Japonica Group]
gi|24414047|dbj|BAC22296.1| DNA binding protein-like [Oryza sativa Japonica Group]
Length = 566
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 90/175 (51%), Gaps = 19/175 (10%)
Query: 459 ARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNC 518
ARV+ + E+ + + + K++ IDL+ DE F ++ + KVYY+ +
Sbjct: 20 ARVSR---LWEFTDCKDATKIYHIDLV----------LVDE-KVFKPLLTEGKVYYLDSY 65
Query: 519 TLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN-- 576
+K +NK + + N M+FT T+V C D N P+V Y PL ++ D+N
Sbjct: 66 RVKTSNKSYRPVANPLMMTFTKWTSVEQC-LDVPFNFPTVVYTLTPLNEVSNFV-DKNES 123
Query: 577 -IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA 630
+DV+G + + + + K+ + +KR I + D + +++ ++LW ++A FDA
Sbjct: 124 FVDVIGFITEISTPTMLRPKSRDASSLKRIIQICDANNSTLNVSLWAEQALAFDA 178
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 132/304 (43%), Gaps = 26/304 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN---IDV 62
+NK + + N M+FT T+V C D N P+V Y PL ++ D+N +DV
Sbjct: 70 SNKSYRPVANPLMMTFTKWTSVEQC-LDVPFNFPTVVYTLTPLNEVSNFV-DKNESFVDV 127
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS-------N 115
+G + + + + K+ + +KR I + D + +++ ++LW ++A FDA +
Sbjct: 128 IGFITEISTPTMLRPKSRDASSLKRIIQICDANNSTLNVSLWAEQALAFDAESIHKAGQS 187
Query: 116 KPVIAVKAARVSEFQGGKTLSLSMSSVLS--LNPDIPECHKLQGWFSTQTNTRFEPVSQR 173
+P I + +++ G L+LS S +N ++PE L+ + F+P+
Sbjct: 188 EPQIVLFVGTLAKNYPGIGLALSRGSACKWYININVPEMVDLKN----RIGANFQPIKLL 243
Query: 174 TGGMGGGAAGNL--LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNK 231
A N +RE+ D + + + I ++ S+ Y +C + C
Sbjct: 244 QAPTTNIADENADDKTVRELLDMNPHKNRRTRFQANVTIRKICNDSSWWYNSC--EKC-L 300
Query: 232 KVIDQNNGMYRCEKC-NKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 290
+V+ Y+C C N Y+ L V+ GD T LF A+ I+ + +
Sbjct: 301 RVVKPFGYTYKCTGCYNIAMAVPRYK--LSVLAGDDTADAVFILFGKIAQRIVRKPVELL 358
Query: 291 GEST 294
E T
Sbjct: 359 VEQT 362
>gi|84490268|ref|YP_448500.1| replication factor A [Methanosphaera stadtmanae DSM 3091]
gi|84373587|gb|ABC57857.1| predicted ssDNA-binding protein [Methanosphaera stadtmanae DSM
3091]
Length = 793
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/370 (21%), Positives = 160/370 (43%), Gaps = 58/370 (15%)
Query: 439 VVQTHPIVSLSPYQNKWT-IKARVTNKTPIREWNNARGS-GKLFSIDLLDESGEIRATMF 496
+V+ ++ L+ + + + R+ RE+ GS G++ SI+L DE+G +R +++
Sbjct: 409 IVKIENVLDLNEDEGREVDVVGRIITTNDTREFERGDGSKGQIKSIELADETGIVRTSLW 468
Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
+++ D+ EK +K N + E+S S+ + ++E+ N+P
Sbjct: 469 DEKV----DITEK------LGDAIKIENARTRIGQGQMELSVGKSSRITTPTDEEIVNLP 518
Query: 557 S---VKYCFVPLKTIAEISPDENIDVLGVCI-DAAELSSVTGKTNQKTYMKRDITLVDQS 612
S ++ +TI+++ +E L V I + E+++ T +T+ + R I + D++
Sbjct: 519 SYENIEQDRYNDRTISQLEENETNTKLRVRILNINEINTFT-RTDGRDGRVRSIYVADET 577
Query: 613 QASVTMTLWGKEAETFDASNKPVI---------------------AVKAAR--------- 642
+ ++LW + E +I ++AAR
Sbjct: 578 -GEIQVSLWDDDTEIKFTKGSAIIIENPNITRQNTKLRLSIGNGSTIRAARQEEAEKMLS 636
Query: 643 VSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQN 702
++E + L + + I+D + + + ++G I Y CP+ CN +
Sbjct: 637 LTEIENKLYVEKYIED----IEEDDQHIKIKGTISEINSEKIIYTMCPN--CNIGITQDE 690
Query: 703 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV---GEST 759
NG Y C +C ++ Y +I+ + D T +V T F+ +AE ++ T ++V E T
Sbjct: 691 NG-YICNECGEKIEKPNYLMIISTTLQDETGTVQATFFRKDAEELISTTTEKVVAIYEQT 749
Query: 760 EDHPALKKAL 769
D A+ L
Sbjct: 750 GDESAMSSKL 759
Score = 47.8 bits (112), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 65/309 (21%), Positives = 128/309 (41%), Gaps = 68/309 (22%)
Query: 18 EMSFTHSTTVIPCNEDEVGNMPS---VKYCFVPLKTIAEISPDENIDVLGVCI-DAAELS 73
E+S S+ + ++E+ N+PS ++ +TI+++ +E L V I + E++
Sbjct: 497 ELSVGKSSRITTPTDEEIVNLPSYENIEQDRYNDRTISQLEENETNTKLRVRILNINEIN 556
Query: 74 SVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGK 133
+ T +T+ + R I + D++ + ++LW + E +F G
Sbjct: 557 TFT-RTDGRDGRVRSIYVADET-GEIQVSLWDDDTEI-----------------KFTKG- 596
Query: 134 TLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGA---------AGN 184
S+++ NP+I T+ NT+ +G G+ A
Sbjct: 597 ------SAIIIENPNI-----------TRQNTKLRL------SIGNGSTIRAARQEEAEK 633
Query: 185 LLLMREIQDQQL------GMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNN 238
+L + EI+++ + + + ++G I Y CP+ CN + N
Sbjct: 634 MLSLTEIENKLYVEKYIEDIEEDDQHIKIKGTISEINSEKIIYTMCPN--CNIGITQDEN 691
Query: 239 GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV---GESTE 295
G Y C +C ++ Y +I+ + D T +V T F+ +AE ++ T ++V E T
Sbjct: 692 G-YICNECGEKIEKPNYLMIISTTLQDETGTVQATFFRKDAEELISTTTEKVVAIYEQTG 750
Query: 296 DHPALKKAL 304
D A+ L
Sbjct: 751 DESAMSSKL 759
>gi|413953822|gb|AFW86471.1| hypothetical protein ZEAMMB73_862151 [Zea mays]
Length = 662
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 8/188 (4%)
Query: 469 EWNNARGSGKLFSIDLL---DESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANK 525
E+ + + KL D++ +E G A ++ F MI++ VY +S +K AN+
Sbjct: 165 EFYDPQDESKLLHADMVLIDEEGGSAHAQIYPPLAAVFKPMIKEGNVYNVSYVQIKKANR 224
Query: 526 KFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP---LKTIAEISPDENIDVLGV 582
+ ++ND + FT T V E P + Y P L T+ +I + IDV+G
Sbjct: 225 MYKPVDNDIMIGFTKWTIVEELIEVPPA-FPELVYSLTPFDQLTTLVDIR-EYFIDVIGA 282
Query: 583 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 642
++++++ K Q KR +T+ ++S + + LWG++A +F A + + +
Sbjct: 283 VTMISDVATIRTKMRQTQTAKRSVTIQNESCTPLEVVLWGEQATSFPADQISIAGQDSLQ 342
Query: 643 VSEFQGNL 650
+ F G L
Sbjct: 343 IIIFVGTL 350
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 17/163 (10%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP---LKTIAEISPDENIDV 62
AN+ + ++ND + FT T V E P + Y P L T+ +I + IDV
Sbjct: 222 ANRMYKPVDNDIMIGFTKWTIVEELIEVPPA-FPELVYSLTPFDQLTTLVDIR-EYFIDV 279
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVK 122
+G ++++++ K Q KR +T+ ++S + + LWG++A +F A +
Sbjct: 280 IGAVTMISDVATIRTKMRQTQTAKRSVTIQNESCTPLEVVLWGEQATSFPADQISIAGQD 339
Query: 123 AARVSEFQGGKTLSLSMSSVLSL----------NPDIPECHKL 155
+ ++ F G TL+ S + SL NP +PE L
Sbjct: 340 SLQIIIFVG--TLARSYAGTTSLTGGSSCKWYVNPQVPEATSL 380
>gi|413923515|gb|AFW63447.1| hypothetical protein ZEAMMB73_293789 [Zea mays]
Length = 520
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 143/340 (42%), Gaps = 32/340 (9%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN--IDV 62
P+ + ++N + FT T ED P Y + I ++ IDV
Sbjct: 83 PSRNYYKPVDNSMMIQFTLYTQA-KVVEDPPPTFPRYAYKLTSFENIGNNVDNKTYLIDV 141
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF-------DASN 115
LG+ + L V G N + RDI L D + S +TLWG +A +F D N
Sbjct: 142 LGILTEIGSLHHV-GYNNSN--IIRDIFLKDINNTSTKVTLWGHQASSFSVDNIYDDNDN 198
Query: 116 KPVIAVKAARVSE-FQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRT 174
KPV+ + +++ F+G LS + + NPDIPE Q ++S NT+ + + +
Sbjct: 199 KPVVVLFVGCLAKRFKGEAYLSATAACTWYFNPDIPEA---QVYYSKLLNTKLQMIRPQA 255
Query: 175 GGMGGGAAGNLLLMREIQDQQLGMG-----DKADYCSVRGIIQVFRGSNTTYKACPSQDC 229
A+ L + + ++ L + + C+V I ++ + + +C C
Sbjct: 256 TEKELQASQTLNIEDKTIEELLQLDPDMFPEHGFKCTV-TISRLVQDGRWWFPSCIK--C 312
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
NK + G Y+C CN F Y+L + D T+ F + A+ I+G + Q
Sbjct: 313 NKSSSQTSTG-YQCTSCNGTETGFRYKLNF--IATDGTSEAEFFCFDSIAKRIVGKSCQT 369
Query: 290 VGESTE----DHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ +++ P L + ++ F + + ++ T ++
Sbjct: 370 LFSTSDVSRGPPPDLAAIISLKFTFVVTINMSAFSVTNRV 409
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 100/228 (43%), Gaps = 32/228 (14%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREW--NNARGSGKLFSIDLL--DESG-----EIRAT 494
PI L P I+ R+ IR+W A G L ++L+ DE G EI+A
Sbjct: 5 PIAELDPKSTNAAIRVRI-----IRKWEFRGATNDGPLRHVNLILADEQGTAIHAEIQAA 59
Query: 495 MFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN 554
+ +D+ + +I+ DKVY + + P+ + ++N + FT T ED
Sbjct: 60 LVDDKGS----LIQIDKVYELKRFRVTPSRNYYKPVDNSMMIQFTLYTQA-KVVEDPPPT 114
Query: 555 MPSVKYCFVPLKTIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS 612
P Y + I ++ IDVLG+ + L V G N + RDI L D +
Sbjct: 115 FPRYAYKLTSFENIGNNVDNKTYLIDVLGILTEIGSLHHV-GYNNSN--IIRDIFLKDIN 171
Query: 613 QASVTMTLWGKEAETF-------DASNKPVIAVKAARVSE-FQGNLLL 652
S +TLWG +A +F D NKPV+ + +++ F+G L
Sbjct: 172 NTSTKVTLWGHQASSFSVDNIYDDNDNKPVVVLFVGCLAKRFKGEAYL 219
>gi|413948787|gb|AFW81436.1| hypothetical protein ZEAMMB73_509972 [Zea mays]
Length = 524
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 88/188 (46%), Gaps = 8/188 (4%)
Query: 469 EWNNARGSGKLFSIDLL---DESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANK 525
E+ + + L D++ +E G A ++ F MI++ VY +S +K AN+
Sbjct: 27 EFYDPQDESNLLHADMVLIDEEGGSAHAQIYPPLAAVFKPMIKEGNVYNVSYVQIKKANR 86
Query: 526 KFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP---LKTIAEISPDENIDVLGV 582
+ ++ND + FT TT+ E P + Y P L T+ +I + IDV+G
Sbjct: 87 MYKPVDNDIMIGFTKWTTIEELIEVPPA-FPEIVYSLTPFDQLTTLVDIR-EYFIDVIGA 144
Query: 583 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 642
++++++ K Q KR +T+ ++S + + LWG +A +F A + + +
Sbjct: 145 VTMISDVATIRTKMRQTQTAKRSVTIQNESCTPLEVVLWGGQATSFPADQISIAGQDSLQ 204
Query: 643 VSEFQGNL 650
+ F G L
Sbjct: 205 IIIFVGTL 212
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 17/163 (10%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP---LKTIAEISPDENIDV 62
AN+ + ++ND + FT TT+ E P + Y P L T+ +I + IDV
Sbjct: 84 ANRMYKPVDNDIMIGFTKWTTIEELIEVPPA-FPEIVYSLTPFDQLTTLVDIR-EYFIDV 141
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVK 122
+G ++++++ K Q KR +T+ ++S + + LWG +A +F A +
Sbjct: 142 IGAVTMISDVATIRTKMRQTQTAKRSVTIQNESCTPLEVVLWGGQATSFPADQISIAGQD 201
Query: 123 AARVSEFQGGKTLSLSMSSVLSL----------NPDIPECHKL 155
+ ++ F G TL+ S + SL NP +PE L
Sbjct: 202 SLQIIIFVG--TLARSYAGTTSLTGGSSCKWYVNPQVPEATSL 242
>gi|414585088|tpg|DAA35659.1| TPA: hypothetical protein ZEAMMB73_284494 [Zea mays]
Length = 524
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 88/188 (46%), Gaps = 8/188 (4%)
Query: 469 EWNNARGSGKLFSIDLL---DESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANK 525
E+ + + L D++ +E G A ++ F MI++ VY +S +K AN+
Sbjct: 27 EFYDPQDESNLLHADMVLIDEEGGSAHAQIYPPLAAVFKPMIKEGNVYNVSYVQIKKANR 86
Query: 526 KFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP---LKTIAEISPDENIDVLGV 582
+ ++ND + FT TT+ E P + Y P L T+ +I + IDV+G
Sbjct: 87 MYKPVDNDIMIGFTKWTTIEELIEVPPA-FPEIGYSLTPFDQLTTLVDIR-EYFIDVIGA 144
Query: 583 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 642
++++++ K Q KR +T+ ++S + + +WG +A +F A + + +
Sbjct: 145 VTMISDVATIRTKMRQTQTAKRSVTIQNESCTPLEVVMWGGQATSFPADQISIAGQDSLQ 204
Query: 643 VSEFQGNL 650
+ F G L
Sbjct: 205 IIIFVGTL 212
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 17/163 (10%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP---LKTIAEISPDENIDV 62
AN+ + ++ND + FT TT+ E P + Y P L T+ +I + IDV
Sbjct: 84 ANRMYKPVDNDIMIGFTKWTTIEELIEVPPA-FPEIGYSLTPFDQLTTLVDIR-EYFIDV 141
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVK 122
+G ++++++ K Q KR +T+ ++S + + +WG +A +F A +
Sbjct: 142 IGAVTMISDVATIRTKMRQTQTAKRSVTIQNESCTPLEVVMWGGQATSFPADQISIAGQD 201
Query: 123 AARVSEFQGGKTLSLSMSSVLSL----------NPDIPECHKL 155
+ ++ F G TL+ S + SL NP +PE L
Sbjct: 202 SLQIIIFVG--TLARSYAGTTSLTGGSSCKWYVNPQVPEATSL 242
>gi|321455751|gb|EFX66876.1| hypothetical protein DAPPUDRAFT_331651 [Daphnia pulex]
Length = 245
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 79/168 (47%), Gaps = 32/168 (19%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PAN K+SS+ N YE++F +T + D + +DV+G
Sbjct: 110 PANNKYSSMRNGYEITFNQNTALPNLENDSI------------------------VDVIG 145
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+ + ++E + K ++ + LV + VT++L GK + + ++A K
Sbjct: 146 LVLYSSEFVFIDKKNKVSRFL--EAKLVGSTNTEVTLSLLGKLVD------QRIVAYKGV 197
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQ 172
++S GG L S+V+ +NP + E H+L+ W++ +T +F+ + Q
Sbjct: 198 KISNNFGGCYLETLSSTVVQVNPAMNEAHQLREWYNNETQRKFDEILQ 245
Score = 42.7 bits (99), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 32/127 (25%)
Query: 518 CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI 577
T+KPAN K+SS+ N YE++F +T + D + +
Sbjct: 106 ATVKPANNKYSSMRNGYEITFNQNTALPNLENDSI------------------------V 141
Query: 578 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIA 637
DV+G+ + ++E + K ++ + LV + VT++L GK + + ++A
Sbjct: 142 DVIGLVLYSSEFVFIDKKNKVSRFL--EAKLVGSTNTEVTLSLLGKLVD------QRIVA 193
Query: 638 VKAARVS 644
K ++S
Sbjct: 194 YKGVKIS 200
>gi|413952523|gb|AFW85172.1| hypothetical protein ZEAMMB73_007991 [Zea mays]
Length = 504
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 101/228 (44%), Gaps = 32/228 (14%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREW--NNARGSGKLFSIDLL--DESG-----EIRAT 494
PI L P I+ R+ IR+W A G L ++L+ DE G EI+A
Sbjct: 5 PIAELDPRSTNAAIRVRI-----IRKWEFRGATNDGPLRHVNLILADEQGTTIHAEIQAA 59
Query: 495 MFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN 554
+ D+ +I+ DKVY + + P+ + ++N + FT T +D N
Sbjct: 60 LVADK----DSLIQIDKVYELKRFRVAPSRNYYKPVDNSMMIQFTLYTQA-KVVKDPPPN 114
Query: 555 MPSVKYCFVPLKTIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS 612
P Y + I++ ++ IDVLG+ + L V G N + RDI L D +
Sbjct: 115 FPRYAYKLTSFEDISDNVDNKTYLIDVLGILTEIGSLHHV-GYNNSN--IIRDIFLKDIN 171
Query: 613 QASVTMTLWGKEAETFDA-------SNKPVIAVKAARVSE-FQGNLLL 652
AS +TLWG +A +F NKPV+ + +++ F+G L
Sbjct: 172 NASTKVTLWGHQASSFSVDNICDENDNKPVVILFVGCLAKRFKGEAYL 219
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 131/307 (42%), Gaps = 28/307 (9%)
Query: 4 APANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN--ID 61
AP+ + ++N + FT T +D N P Y + I++ ++ ID
Sbjct: 82 APSRNYYKPVDNSMMIQFTLYTQA-KVVKDPPPNFPRYAYKLTSFEDISDNVDNKTYLID 140
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA-------S 114
VLG+ + L V G N + RDI L D + AS +TLWG +A +F
Sbjct: 141 VLGILTEIGSLHHV-GYNNSN--IIRDIFLKDINNASTKVTLWGHQASSFSVDNICDEND 197
Query: 115 NKPVIAVKAARVSE-FQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQR 173
NKPV+ + +++ F+G LS + + NPDIPE Q +++ NT+ + +
Sbjct: 198 NKPVVILFVGCLAKRFKGEAYLSATAACTWYFNPDIPEA---QMYYNKLLNTKLHMIRPQ 254
Query: 174 TGGMGGGAAGNLLLMREIQDQQLGMG-----DKADYCSVRGIIQVFRGSNTTYKACPSQD 228
A+ + + ++ L + ++ C+V I ++ + + +C
Sbjct: 255 ATAEELQASQTPNIEDKTIEELLQLDPDMFPEQGFRCTV-TISRLVQNGRWWFPSCIK-- 311
Query: 229 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 288
CNK + G Y+C CN F Y+L + D T+ F A I+G + Q
Sbjct: 312 CNKSSSQTSTG-YQCTSCNGTETEFRYKLSF--IATDGTSEAEFFCFDTIARRIVGKSCQ 368
Query: 289 EVGESTE 295
+ +++
Sbjct: 369 TLFSTSD 375
>gi|413933977|gb|AFW68528.1| hypothetical protein ZEAMMB73_247337 [Zea mays]
Length = 507
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 133/346 (38%), Gaps = 28/346 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI-AEISPDEN-IDVL 63
A + I+ D + FT T + P + + P Y P I ++I +DVL
Sbjct: 90 AKTAYKPIDGDKMIQFTTYTIIKPAS-NPPPTFPLYIYRLTPFDEIESQIQHKTKFLDVL 148
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF-------DASNK 116
G + L +V + + RD+ + D S+ ++ +TLW K A +F S K
Sbjct: 149 GTITEVTALKTVHIQGQLSPTIIRDVMIEDLSRKTLKITLWAKRATSFTIQDVYDPVSKK 208
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGG 176
P++A+ + +F G LS + NP IPE Q +T P +
Sbjct: 209 PILALFVGCLPKFYKGVYLSGGAACHWYFNPTIPEAEAYQNRRGGETIQLHLPTQPKHAL 268
Query: 177 MGGGAAGNLLLMREIQDQQLGMG-----DKADYCSVRGIIQVFRGSNTTYKACPSQDCNK 231
+ + +Q L M D C+V I ++ + Y +C C +
Sbjct: 269 QTFQPPT---IEHKTLEQLLTMNPYDYPDTGYECTV-TITKIDTSNTWWYPSC--TKCGR 322
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG 291
K N Y C+ C + F Y+L D T + F N A I+G + + +
Sbjct: 323 KTTPHNTTYY-CDWCKWDGYKFKYKLKF--RASDATAMAQMFCFDNIARYIVGKSCEVIL 379
Query: 292 ESTEDH----PALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINS 333
ST P L + + ++ FR+ +N ++P + I S
Sbjct: 380 RSTNAATPIPPDLAQIVSLKFTFRVIPDDSSFNNQDQVPIALRIIS 425
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 20/219 (9%)
Query: 448 LSPYQNKWTIKARVTNKTPIREW--NNARGSGKLFSIDLL--DESG-EIRATMFNDECNR 502
L+ Y+ I+ V+ R+W + A +G L ID++ D G I A + +
Sbjct: 15 LTAYKKHAIIQVHVS-----RKWSFHGATENGPLQHIDMVLSDCKGNSIYAEIPANLAEE 69
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
+IE +++Y IS + A + I+ D + FT T + P + + P Y
Sbjct: 70 KGVLIETNQIYDISRFRVTAAKTAYKPIDGDKMIQFTTYTIIKPAS-NPPPTFPLYIYRL 128
Query: 563 VPLKTI-AEISPDEN-IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTL 620
P I ++I +DVLG + L +V + + RD+ + D S+ ++ +TL
Sbjct: 129 TPFDEIESQIQHKTKFLDVLGTITEVTALKTVHIQGQLSPTIIRDVMIEDLSRKTLKITL 188
Query: 621 WGKEAETF-------DASNKPVIAVKAARVSEFQGNLLL 652
W K A +F S KP++A+ + +F + L
Sbjct: 189 WAKRATSFTIQDVYDPVSKKPILALFVGCLPKFYKGVYL 227
>gi|302825229|ref|XP_002994245.1| hypothetical protein SELMODRAFT_432174 [Selaginella moellendorffii]
gi|300137892|gb|EFJ04690.1| hypothetical protein SELMODRAFT_432174 [Selaginella moellendorffii]
Length = 982
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 108/260 (41%), Gaps = 30/260 (11%)
Query: 33 DEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLV 92
DE P + + + + D +DV+G+ I ++ VT + + KR + L
Sbjct: 71 DEDATFPRIVLAKTSILSACQKERDSFVDVVGIVIWIGTIT-VTSRDSGTFVKKRTLCLG 129
Query: 93 DQSQASVTMTLWGKEAE--------TFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLS 144
D S SV + LW +AE D+ +P+I VK +VS++ G ++ +S++L
Sbjct: 130 DDSGHSVDLCLWDLKAEEEGSYIQERIDSGVQPIICVKGGKVSDYNGKSLSAIGVSTIL- 188
Query: 145 LNPDIPECHKLQGWFSTQTN-TRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKAD 203
+ P++ L+ W + N T F +S + L EI + QL M +
Sbjct: 189 IEPEMEAVADLREWMTLYYNVTNFIHLSTSSSRQTVSCTTTL---SEISNMQLKMSFYYN 245
Query: 204 YCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMI 263
C I V ++ C KK +G + C CN E ++ L + I
Sbjct: 246 AC-----INVVN----------ARQCGKKTTRTADGWF-CNYCNFESANMEFKYALKMCI 289
Query: 264 GDWTNSVWVTLFQNEAESIL 283
D ++ VW FQ + I+
Sbjct: 290 EDSSSHVWAIAFQEATQEIV 309
>gi|413937763|gb|AFW72314.1| hypothetical protein ZEAMMB73_397324 [Zea mays]
Length = 564
Score = 65.9 bits (159), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 131/346 (37%), Gaps = 28/346 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI-AEISPDEN-IDVL 63
A + I+ D + FT T + P + + P Y P I ++I +DVL
Sbjct: 84 AKTAYKPIDGDKMIQFTTYTIIKPAS-NPPPTFPLYIYQLTPFDEIESQIQHKTKFLDVL 142
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF-------DASNK 116
G + L V + + RD+ + D S+ ++ +TLW K A +F S K
Sbjct: 143 GTITEITALKIVHIEGQLSPTIIRDVMIEDLSRKTLKITLWAKRATSFTIQDVYDPVSKK 202
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGG 176
P++A+ + +F G LS + NP IPE Q +T P +
Sbjct: 203 PILALFVGCLPKFYKGVYLSGGAACHWYFNPTIPEAEAYQNRRGGETIQLHLPTQPKHAL 262
Query: 177 MGGGAAGNLLLMREIQDQQLGMG-----DKADYCSVRGIIQVFRGSNTTYKACPSQDCNK 231
+ + +Q L M D C+V I ++ + Y +C C +
Sbjct: 263 QTFQPPT---IEHKTLEQLLTMNPYDYPDTGYECTV-TITEIDTSNTWWYPSC--TKCGR 316
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILG----VTA 287
K N Y C+ C + F Y+L D T + F N A I+G V
Sbjct: 317 KTTPHNTAYY-CDWCKWDGYKFKYKLKF--RASDATAMAQMFCFDNIARYIVGKSCEVIL 373
Query: 288 QEVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINS 333
+ +T P L + + ++ FR+ +N ++P + I S
Sbjct: 374 RSTNAATPIPPDLAQIVSLKFTFRVIPDDSSFNNQDQVPIALRIIS 419
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 20/219 (9%)
Query: 448 LSPYQNKWTIKARVTNKTPIREW--NNARGSGKLFSIDLL--DESG-EIRATMFNDECNR 502
L+ Y+ I+ V+ R+W + A G L ID++ D G I A + +
Sbjct: 9 LTTYKKHAIIQVHVS-----RKWSFHGATEKGPLQHIDMVLSDCKGNSIYAEIPANLAEE 63
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
+IE +++Y IS + A + I+ D + FT T + P + + P Y
Sbjct: 64 KGALIETNQIYDISRFRVTAAKTAYKPIDGDKMIQFTTYTIIKPAS-NPPPTFPLYIYQL 122
Query: 563 VPLKTI-AEISPDEN-IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTL 620
P I ++I +DVLG + L V + + RD+ + D S+ ++ +TL
Sbjct: 123 TPFDEIESQIQHKTKFLDVLGTITEITALKIVHIEGQLSPTIIRDVMIEDLSRKTLKITL 182
Query: 621 WGKEAETF-------DASNKPVIAVKAARVSEFQGNLLL 652
W K A +F S KP++A+ + +F + L
Sbjct: 183 WAKRATSFTIQDVYDPVSKKPILALFVGCLPKFYKGVYL 221
>gi|414869783|tpg|DAA48340.1| TPA: hypothetical protein ZEAMMB73_848257 [Zea mays]
Length = 288
Score = 65.9 bits (159), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 104/220 (47%), Gaps = 17/220 (7%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDL--LDESGE-IRATMFNDECN 501
I L P IK V+ K R A +G + IDL +D+ G I A + +
Sbjct: 6 IPDLVPQNRHAVIKVYVSRKWIFR---GAMDNGPIHHIDLVLIDKEGNGISAEIPGNLAE 62
Query: 502 RFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC 561
+I+++++Y IS T+ A + F ++ D + FT+ T +I + D P Y
Sbjct: 63 EKGSIIKENEIYEISRFTISSARQMFKPVHIDKMIHFTYHT-IIKASLDSPSTFPRYVYH 121
Query: 562 FVPLKTI-AEISPDEN-IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
PL I + I +E +DVLGV + L V +T + + + ++I + D + ++ +T
Sbjct: 122 LTPLHQIESYIQKNEYFLDVLGVITQVSALKPVRTQTQESSNVIKEIIIKDINDVTMRLT 181
Query: 620 LWGKEAETF---DASN----KPVIAVKAARVSE-FQGNLL 651
LW + A+ F D N KP++ + +++ FQG L
Sbjct: 182 LWAERAKAFKLDDVYNPLEQKPIVTLFVGCLAKNFQGAYL 221
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 10/166 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI-AEISPDEN-IDVL 63
A + F ++ D + FT+ T +I + D P Y PL I + I +E +DVL
Sbjct: 84 ARQMFKPVHIDKMIHFTYHT-IIKASLDSPSTFPRYVYHLTPLHQIESYIQKNEYFLDVL 142
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF---DASN----K 116
GV + L V +T + + + ++I + D + ++ +TLW + A+ F D N K
Sbjct: 143 GVITQVSALKPVRTQTQESSNVIKEIIIKDINDVTMRLTLWAERAKAFKLDDVYNPLEQK 202
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ 162
P++ + +++ G L+ + NPDI E F +Q
Sbjct: 203 PIVTLFVGCLAKNFQGAYLNGGTTCRWYFNPDIKEAAPYYQRFGSQ 248
>gi|297736413|emb|CBI25136.3| unnamed protein product [Vitis vinifera]
Length = 168
Score = 65.9 bits (159), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 72/154 (46%), Gaps = 17/154 (11%)
Query: 106 KEAETFDASNK-PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-- 162
+ E D ++K P+IA+K+ +V +FQG +LS S L +NPD PE KL+ W+
Sbjct: 15 RRRELLDNADKFPIIAIKSLKVGDFQGVSLSTLSKSIAL-VNPDTPESKKLRSWYHDYHG 73
Query: 163 -------TNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFR 215
+ P S+ GG+ + L + LG DK + S+R I +
Sbjct: 74 KVASMACIGSDISPSSK--GGVRSMYYDRVSLSHVTSNPSLG-EDKPSFFSIRAYISFIK 130
Query: 216 GSNTT-YKACPSQDCNKKVIDQNNGMYRCEKCNK 248
T Y+AC + CNKKV D Y CE C K
Sbjct: 131 PEQTMWYQAC--KTCNKKVTDAIESGYWCEGCEK 162
>gi|321456582|gb|EFX67685.1| hypothetical protein DAPPUDRAFT_330783 [Daphnia pulex]
Length = 182
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 79/168 (47%), Gaps = 32/168 (19%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PAN K+SS+ N YE++F +T + D + +DV+G
Sbjct: 47 PANNKYSSMRNGYEITFNQNTALPNLENDSI------------------------VDVIG 82
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+ + ++E + K ++ + LV + VT++L GK + + ++A K
Sbjct: 83 LVLYSSEFVFIDKKNKVSRFL--EAKLVGSTNTEVTLSLLGKLVD------QRIVAYKGV 134
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQ 172
++S GG L S+V+ +NP + E H+L+ W++ +T +F+ + Q
Sbjct: 135 KISNNFGGCYLETLSSTVVQVNPAMNEAHQLREWYNNETQRKFDEILQ 182
Score = 40.0 bits (92), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 32/127 (25%)
Query: 518 CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI 577
+KPAN K+SS+ N YE++F +T + D + +
Sbjct: 43 AAVKPANNKYSSMRNGYEITFNQNTALPNLENDSI------------------------V 78
Query: 578 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIA 637
DV+G+ + ++E + K ++ + LV + VT++L GK ++ ++A
Sbjct: 79 DVIGLVLYSSEFVFIDKKNKVSRFL--EAKLVGSTNTEVTLSLLGK------LVDQRIVA 130
Query: 638 VKAARVS 644
K ++S
Sbjct: 131 YKGVKIS 137
>gi|156097108|ref|XP_001614587.1| replication factor A-related protein [Plasmodium vivax Sal-1]
gi|148803461|gb|EDL44860.1| replication factor A-related protein, putative [Plasmodium vivax]
Length = 485
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 94/433 (21%), Positives = 173/433 (39%), Gaps = 105/433 (24%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNRF 503
I ++ Y +KW IKA+V NK+ + + N + FSID+ D G+ I + +++
Sbjct: 10 ISQITTYVSKWIIKAKVVNKSKLSTFKN---NNSFFSIDVTDVHGDSISCKFWGSAADKW 66
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP-SVKYCF 562
+ IE KVY S + AN K++++ + YE++F + + +D G + K
Sbjct: 67 FNNIELKKVYIFSKGRVSIANPKYNTVKHKYELTFNEDSEIHEVKDD--GEIKIQKKISL 124
Query: 563 VPLKTIAEISPDE---NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
V L+ I +I+ E D++G+ +S++ K K++I +VD ++ S +
Sbjct: 125 VNLRDI-KIATKETPFTADLIGIVKHIGTISNLKTKQGNDI-TKQNIIIVDDTKHSFEIA 182
Query: 620 LWG----------KEAETFDASNKPV--------------------------IAVKAARV 643
W KE E + +N + + K +
Sbjct: 183 FWDSNVNLIRDEIKENEIYIFTNISIRNWNDMKNGTFGVTSSIEKIENLNEELKAKCTMI 242
Query: 644 SEFQG------------NLLL--MREIQDQQLGMGDKAD--------YCSVRGIIQVFRG 681
SE+ N+L + +I D+ + D D Y V I +++
Sbjct: 243 SEWYNTNGKYEQFTNMRNILSNDVSQIPDKHYALSDVNDVLAKISGTYTLVGRIKRIYWK 302
Query: 682 SNTT-----YKACPSQDCNKKVI-----------------DQNNGMYRCEKCN----KEF 715
S Y AC C KK++ D+ + +Y C C+ K F
Sbjct: 303 SKENEHRFYYPACTK--CKKKLLSSGQDNATDNDYETNANDEESIVYSCMNCDENNVKPF 360
Query: 716 NTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE---VGESTEDHPALKKALFTQ 772
+T+ + D++ S+ + F +E ++LG A+E + E T D+ L+ +
Sbjct: 361 YNYTFNFLFM----DFSGSITLRAFSDEGYNLLGKKAEELKGLDEDTLDYLFNYDFLYKE 416
Query: 773 YIFRLRAKLEHYN 785
Y +R + YN
Sbjct: 417 YKVVVRVNQKVYN 429
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 75/372 (20%), Positives = 153/372 (41%), Gaps = 75/372 (20%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP-SVKYCFVPLKTIAEISPDEN---ID 61
AN K++++ + YE++F + + +D G + K V L+ I +I+ E D
Sbjct: 86 ANPKYNTVKHKYELTFNEDSEIHEVKDD--GEIKIQKKISLVNLRDI-KIATKETPFTAD 142
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----------KEAETF 111
++G+ +S++ K K++I +VD ++ S + W KE E +
Sbjct: 143 LIGIVKHIGTISNLKTKQGNDI-TKQNIIIVDDTKHSFEIAFWDSNVNLIRDEIKENEIY 201
Query: 112 DASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDI-PECHKLQGWFSTQTNTRFEPV 170
+N + + G ++ S+ + +LN ++ +C + W++T N ++E
Sbjct: 202 IFTNISIRNWNDMK----NGTFGVTSSIEKIENLNEELKAKCTMISEWYNT--NGKYEQF 255
Query: 171 SQRTGGMGGGAAGNLLLMREIQDQQLGMGDKAD--------YCSVRGIIQVFRGSNTT-- 220
+ + + +I D+ + D D Y V I +++ S
Sbjct: 256 TNMRNILSNDVS-------QIPDKHYALSDVNDVLAKISGTYTLVGRIKRIYWKSKENEH 308
Query: 221 ---YKACPSQDCNKKVI-----------------DQNNGMYRCEKCN----KEFNTFTYR 256
Y AC C KK++ D+ + +Y C C+ K F +T+
Sbjct: 309 RFYYPACTK--CKKKLLSSGQDNATDNDYETNANDEESIVYSCMNCDENNVKPFYNYTFN 366
Query: 257 LILPVMIGDWTNSVWVTLFQNEAESILGVTAQE---VGESTEDHPALKKALFTQYIFRLR 313
+ D++ S+ + F +E ++LG A+E + E T D+ L+ +Y +R
Sbjct: 367 FLFM----DFSGSITLRAFSDEGYNLLGKKAEELKGLDEDTLDYLFNYDFLYKEYKVVVR 422
Query: 314 AKLEHYNGTKKI 325
+ YNG +++
Sbjct: 423 VNQKVYNGIERV 434
>gi|391329407|ref|XP_003739166.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 291
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 89/196 (45%), Gaps = 5/196 (2%)
Query: 457 IKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYIS 516
+ RV +K+ ++ W GKLFS + D SG I+ D C+ H+ I Y ++
Sbjct: 45 VHGRVVSKSNMKNWKKNNQEGKLFSFVIEDSSGSIQVVTSGDRCDALHEEITVGDCYRLN 104
Query: 517 NCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN 576
TL +N ++ + E+ H T + + + N+P K + + I +
Sbjct: 105 AFTLHESNPLYNKTKHPLEI---HITKLSQVKKIQGKNLPRSKINNITIAEIMNTELNTL 161
Query: 577 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVI 636
ID++G+ + +++ + + +K++I LVD + V + +W A+ F + +
Sbjct: 162 IDIIGIVYEVGHPQNLSCR-DGVMRIKQNIRLVDNTLRVVNLGVWN-NAQNFAGTEGKCV 219
Query: 637 AVKAARVSEFQGNLLL 652
A+ V E+ G +L
Sbjct: 220 AITNLLVREYAGKKVL 235
>gi|115440927|ref|NP_001044743.1| Os01g0838100 [Oryza sativa Japonica Group]
gi|56784643|dbj|BAD81690.1| helicase-like protein [Oryza sativa Japonica Group]
gi|113534274|dbj|BAF06657.1| Os01g0838100 [Oryza sativa Japonica Group]
Length = 474
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 88/196 (44%), Gaps = 19/196 (9%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSID----LLDESG-EIRATMFNDE 499
+ +SP W I+A++ R W+ + L I L+DE G + A + E
Sbjct: 45 LCDISPASRGWKIRAKIA-----RMWDYTGTADDLPPIHVDLVLIDEKGNAMYAEIPGVE 99
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPS-- 557
++F ++++ KVY S + P+ + N Y + T T V NE + PS
Sbjct: 100 ADKFRPLLQESKVYTFSKFLILPSKPAYKPFPNKYMIKLTPWTNVEQVNEVP-ADFPSHV 158
Query: 558 ---VKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA 614
V++ ++ L+ + + DV+G+ I ++L+ V + KR I L D +
Sbjct: 159 FNLVQFSYLSLRVGMQ---EYFTDVIGMIIGVSKLAYVRMASKTSDTPKRVIALRDLANC 215
Query: 615 SVTMTLWGKEAETFDA 630
V + LWG+ A FDA
Sbjct: 216 EVKLVLWGEHAPDFDA 231
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 119/308 (38%), Gaps = 41/308 (13%)
Query: 1 MLAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPS-----VKYCFVPLKTIAEIS 55
L P+ + N Y + T T V NE + PS V++ ++ L+ +
Sbjct: 118 FLILPSKPAYKPFPNKYMIKLTPWTNVEQVNEVP-ADFPSHVFNLVQFSYLSLRVGMQ-- 174
Query: 56 PDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN 115
+ DV+G+ I ++L+ V + KR I L D + V + LWG+ A FDA
Sbjct: 175 -EYFTDVIGMIIGVSKLAYVRMASKTSDTPKRVIALRDLANCEVKLVLWGEHAPDFDADA 233
Query: 116 KPVIAVKAARVSEF--------QGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-- 165
+ A V F +TLS + LN DIPE ++ F + ++
Sbjct: 234 VHSVGQDNAVVGIFVDTLMKAYNNEETLSGGSACKWYLNEDIPEINQF---FDSLGDSAP 290
Query: 166 RFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP 225
+ + +S G L + + D + K D G F + T K P
Sbjct: 291 KIQWISTGAESFGSSQRPARLEHKSVADLK-----KIDPWEAAG--AGFSCTVTIAKLSP 343
Query: 226 SQ-----DCNK--KVIDQNNGMYRCEK-CNKEFNTFTYRLILPVMIG-DWTNSVWVTLFQ 276
SQ C++ + Y+C C+ YRL L IG D TNS LF
Sbjct: 344 SQSWWFSSCSRCHRAATAYGSSYKCSSGCSSVTAIPKYRLCL---IGTDGTNSAEFVLFG 400
Query: 277 NEAESILG 284
A+ ++G
Sbjct: 401 RVAQQVVG 408
>gi|38346586|emb|CAE04650.2| OSJNBa0061G20.6 [Oryza sativa Japonica Group]
Length = 1410
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 129/289 (44%), Gaps = 34/289 (11%)
Query: 484 LLDES-GEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHST 542
L+DE+ G I A +F + F ++ + K+YY+++ ++ ++ + ++N ++FT T
Sbjct: 674 LVDETEGSIAAQIFPPDGKLFKPLLSEGKIYYLTHYIVRNCSRSYKPVSNSLAIAFTGWT 733
Query: 543 TVIPCNEDEVGNMPSVKYCFVPLKTIAEISP-----DENIDVLGVCIDAAELSSVTGKTN 597
V E+ V S + LK+ +++ D D +GV + + ++SV +T
Sbjct: 734 IV----EEYVNAPTSFPFYTYSLKSFNQLTALLDNKDSFTDTIGVITEVSSITSVRSRTR 789
Query: 598 QKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQ 657
+KR++ + D + A++ ++LWG A F A + +K+ + EI+
Sbjct: 790 DGDSLKRNVFISDANNATIRVSLWGDRATEFPAEESS-LGIKS------------IIEIK 836
Query: 658 DQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC--EKCNKEF 715
D + K ++ V I+ GS Y AC D ++ YRC C
Sbjct: 837 DLNPFVHKKLEFV-VTVTIKKIDGS-WWYVAC---DRCRRTARPYGKTYRCGGGDCPATV 891
Query: 716 NTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA 764
+ R L ++ GD T +F A+ I+G + + + + HPA
Sbjct: 892 PA-SPRFKLGLIAGDDTADTKFVMFGRMAQRIIGKSVENL---LDQHPA 936
Score = 43.5 bits (101), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 7 NKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISP-----DENID 61
++ + ++N ++FT T V E+ V S + LK+ +++ D D
Sbjct: 715 SRSYKPVSNSLAIAFTGWTIV----EEYVNAPTSFPFYTYSLKSFNQLTALLDNKDSFTD 770
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA 113
+GV + + ++SV +T +KR++ + D + A++ ++LWG A F A
Sbjct: 771 TIGVITEVSSITSVRSRTRDGDSLKRNVFISDANNATIRVSLWGDRATEFPA 822
>gi|402216670|gb|EJT96754.1| nucleic acid-binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 430
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 119/288 (41%), Gaps = 40/288 (13%)
Query: 60 IDVLGVCIDAAELSSVTGKTN-----------------QKTYMKRDITLVDQSQASVTMT 102
++V+GV + E+ +++ K + M+R++ LVD S V +
Sbjct: 87 VNVIGVVLHVGEVEAMSEKKRVAGKSGDGESESEEEDPKGERMRREVQLVDDSAHVVRIA 146
Query: 103 LWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ 162
LW A + ++ +K ++ GG +L++ + + +P + E L+ W++
Sbjct: 147 LWKDRATSMAVKRGSILLLKKVVIAA-HGGISLNVHEKTKVDKDPKVAEGTSLKNWYN-- 203
Query: 163 TNTRFEPVSQRTGGMGGGAAGNL----------LLMREIQDQQLGMGDKADYCSVRGIIQ 212
N P + R G A L L + E+Q LG + D +V G IQ
Sbjct: 204 -NLASNPQTFRHISSGYSAGSGLFTDIEPRSSVLTIPEVQKSNLGTSSRVDTFNVEGRIQ 262
Query: 213 VFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIG-DWTNSVW 271
V N Y+AC + CNK + + E + + F Y L L IG D S+
Sbjct: 263 VV-DWNAVYEACRNTHCNKSIEKSPCDIEGHEDMSDDNRRFCYHLKL--TIGQDRRRSID 319
Query: 272 VTLFQNEAESILGVTAQEVGESTEDHPA-----LKKALFTQYIFRLRA 314
V +F A+ +L A EV + + P L L T++ F ++A
Sbjct: 320 VPVFTPLADKMLEEDATEVVKKRDHTPGQYDEVLGALLKTKWRFTIQA 367
Score = 42.4 bits (98), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 645 EFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNG 704
E + ++L + E+Q LG + D +V G IQV N Y+AC + CNK +
Sbjct: 230 EPRSSVLTIPEVQKSNLGTSSRVDTFNVEGRIQVV-DWNAVYEACRNTHCNKSIEKSPCD 288
Query: 705 MYRCEKCNKEFNTFTYRLILPVMIG-DWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP 763
+ E + + F Y L L IG D S+ V +F A+ +L A EV + + P
Sbjct: 289 IEGHEDMSDDNRRFCYHLKL--TIGQDRRRSIDVPVFTPLADKMLEEDATEVVKKRDHTP 346
Query: 764 A-----LKKALFTQYIFRLRA 779
L L T++ F ++A
Sbjct: 347 GQYDEVLGALLKTKWRFTIQA 367
>gi|389582888|dbj|GAB65624.1| replication factor A-related protein [Plasmodium cynomolgi strain
B]
Length = 485
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 94/433 (21%), Positives = 173/433 (39%), Gaps = 105/433 (24%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNRF 503
I ++ Y +KW IKA+V NK+ + + N + FSID+ D G+ I + +++
Sbjct: 10 ISQITTYVSKWIIKAKVVNKSKLSTFKN---NNSFFSIDVTDVHGDSISCKFWGSAADKW 66
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP-SVKYCF 562
+ IE KVY S + AN K++++ + YE++F + + +D G + K
Sbjct: 67 FNNIELKKVYIFSKGRVSIANPKYNTVKHKYELTFNEDSEIHEVKDD--GEIKIQKKISL 124
Query: 563 VPLKTIAEISPDE---NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
V L+ I +I+ E D++G+ +S++ K K++I +VD ++ S +
Sbjct: 125 VNLRDI-KIATKETPFTADLIGIVKHIGTISNLKTKQGNDI-TKQNIIIVDDTKHSFEIA 182
Query: 620 LWG----------KEAETFDASNKPV--------------------------IAVKAARV 643
W KE E + +N + + K +
Sbjct: 183 FWDSNVNLIKDEIKENEIYVFTNISIRNWNDMKNGTFGVTSSIEKIENLNEELKAKCTMI 242
Query: 644 SEFQG------------NLLL--MREIQDQQLGMGDKAD--------YCSVRGIIQVFRG 681
SE+ N+L + +I D+ + D D Y V I +++
Sbjct: 243 SEWYNTNGKYEQFTNMRNILSNDVSQIPDKHYALSDVNDVLAKISGTYTLVGRIKRIYWK 302
Query: 682 SNTT-----YKACPSQDCNKKVI-----------------DQNNGMYRCEKCN----KEF 715
S Y AC C KK++ D+ + +Y C C+ K F
Sbjct: 303 SKENEHRFYYPACTK--CKKKLLSSGQDNAPDNDYETNANDEESIVYSCMNCDENNVKPF 360
Query: 716 NTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE---VGESTEDHPALKKALFTQ 772
+T+ + D++ S+ + F +E ++LG A+E + E T D+ L+ +
Sbjct: 361 YNYTFNFLFM----DFSGSITLRAFSDEGYNLLGKKAEELKSLDEDTLDYLFNYDFLYKE 416
Query: 773 YIFRLRAKLEHYN 785
Y +R + YN
Sbjct: 417 YKVVVRVNQKVYN 429
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 75/372 (20%), Positives = 153/372 (41%), Gaps = 75/372 (20%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP-SVKYCFVPLKTIAEISPDEN---ID 61
AN K++++ + YE++F + + +D G + K V L+ I +I+ E D
Sbjct: 86 ANPKYNTVKHKYELTFNEDSEIHEVKDD--GEIKIQKKISLVNLRDI-KIATKETPFTAD 142
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----------KEAETF 111
++G+ +S++ K K++I +VD ++ S + W KE E +
Sbjct: 143 LIGIVKHIGTISNLKTKQGNDI-TKQNIIIVDDTKHSFEIAFWDSNVNLIKDEIKENEIY 201
Query: 112 DASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDI-PECHKLQGWFSTQTNTRFEPV 170
+N + + G ++ S+ + +LN ++ +C + W++T N ++E
Sbjct: 202 VFTNISIRNWNDMK----NGTFGVTSSIEKIENLNEELKAKCTMISEWYNT--NGKYEQF 255
Query: 171 SQRTGGMGGGAAGNLLLMREIQDQQLGMGDKAD--------YCSVRGIIQVFRGSNTT-- 220
+ + + +I D+ + D D Y V I +++ S
Sbjct: 256 TNMRNILSNDVS-------QIPDKHYALSDVNDVLAKISGTYTLVGRIKRIYWKSKENEH 308
Query: 221 ---YKACPSQDCNKKVI-----------------DQNNGMYRCEKCN----KEFNTFTYR 256
Y AC C KK++ D+ + +Y C C+ K F +T+
Sbjct: 309 RFYYPACTK--CKKKLLSSGQDNAPDNDYETNANDEESIVYSCMNCDENNVKPFYNYTFN 366
Query: 257 LILPVMIGDWTNSVWVTLFQNEAESILGVTAQE---VGESTEDHPALKKALFTQYIFRLR 313
+ D++ S+ + F +E ++LG A+E + E T D+ L+ +Y +R
Sbjct: 367 FLFM----DFSGSITLRAFSDEGYNLLGKKAEELKSLDEDTLDYLFNYDFLYKEYKVVVR 422
Query: 314 AKLEHYNGTKKI 325
+ YNG +++
Sbjct: 423 VNQKVYNGIERV 434
>gi|413949178|gb|AFW81827.1| hypothetical protein ZEAMMB73_139507 [Zea mays]
Length = 263
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 32/247 (12%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREW--NNARGSGKLFSIDLL--DESG-----EIRAT 494
PI L P I+ + IR+W A G L ++L+ DE G EI+A
Sbjct: 5 PIAELDPKSTNAAIRVCI-----IRKWEFRGATNDGPLRHVNLILADEQGTAIHAEIQAA 59
Query: 495 MFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN 554
+ +D+ + +I+ DKVY + + P+ + ++N + FT T ED
Sbjct: 60 LVDDKGS----LIQIDKVYELKRFRVTPSRNYYKPVDNSMMIQFTLYTQA-KVVEDPPPT 114
Query: 555 MPSVKYCFVPLKTIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS 612
P Y + I ++ IDVLG+ + L V G N + RDI L D +
Sbjct: 115 FPRYAYKLTSFENIGNNVDNKTYLIDVLGILTEIGSLHHV-GYNNSN--IIRDIFLKDIN 171
Query: 613 QASVTMTLWGKEAETF-------DASNKPVIAVKAARVSE-FQGNLLLMREIQDQQLGMG 664
S +TLW +A +F D NKPV+ + +++ F+G++L ++Q L +
Sbjct: 172 NTSTKVTLWRHQASSFSVDNICDDNDNKPVVVLFVGCLAKRFKGSVLNTSKLQLHYLHLQ 231
Query: 665 DKADYCS 671
+ Y +
Sbjct: 232 TQYKYVT 238
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 13/143 (9%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN--IDV 62
P+ + ++N + FT T ED P Y + I ++ IDV
Sbjct: 83 PSRNYYKPVDNSMMIQFTLYTQA-KVVEDPPPTFPRYAYKLTSFENIGNNVDNKTYLIDV 141
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF-------DASN 115
LG+ + L V G N + RDI L D + S +TLW +A +F D N
Sbjct: 142 LGILTEIGSLHHV-GYNNSN--IIRDIFLKDINNTSTKVTLWRHQASSFSVDNICDDNDN 198
Query: 116 KPVIAVKAARVSEFQGGKTLSLS 138
KPV+ + +++ G L+ S
Sbjct: 199 KPVVVLFVGCLAKRFKGSVLNTS 221
>gi|226507178|ref|NP_001143203.1| uncharacterized protein LOC100275706 [Zea mays]
gi|195615746|gb|ACG29703.1| hypothetical protein [Zea mays]
Length = 422
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 120/282 (42%), Gaps = 27/282 (9%)
Query: 60 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA------ 113
IDVLG+ + L V G N + RDI L D + S +TLWG +A +F
Sbjct: 45 IDVLGILTEIGSLHHV-GYNNSN--IIRDIFLKDINNTSTKVTLWGHQASSFSVDNNCDE 101
Query: 114 -SNKPVIAVKAARVSE-FQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS 171
NKPV+ + +++ F+G LS + + NPDIPE Q ++S NT+ + +
Sbjct: 102 NDNKPVVVLFVGCLAKRFKGEAYLSATTACTWYFNPDIPEA---QVYYSKLLNTKLQMIR 158
Query: 172 QRTGGMGGGAAGNLLL----MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQ 227
+ A+ L + + E+ M + + I ++ + + +C
Sbjct: 159 PQATEQEFQASQTLNIEDKTIEELLQLDPDMFPQQGFKCTVTISRLVQDGRWWFPSCIK- 217
Query: 228 DCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA 287
CNK + G Y+C CN F Y+L + D T+ F A+ I+G +
Sbjct: 218 -CNKSSSQTSTG-YQCTSCNGTETEFRYKLSF--IATDGTSEAEFFCFDTIAKRIVGKSC 273
Query: 288 QEVGESTE----DHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
Q + +++ P L + ++ F + + ++ T ++
Sbjct: 274 QTLFSASDVSRGPPPDLAAIVSLKFTFAVTINMSAFSVTNRV 315
>gi|413933201|gb|AFW67752.1| hypothetical protein ZEAMMB73_289207 [Zea mays]
Length = 217
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 99/222 (44%), Gaps = 28/222 (12%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL--DESG-----EIRATMF 496
PI L+P + I+ RV K E+ A G L I+L+ DE G EI A +
Sbjct: 5 PITELNPQKINVVIRVRVIRKL---EFRGATNDGPLRHINLILADEQGTAIHAEIPAALA 61
Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
++ + +I+ DKVY I + + P+ F ++N+ + FT T N D P
Sbjct: 62 IEKGS----LIQIDKVYEIRHFRVMPSRGYFKPVHNNLMIQFTLYTQAKVVN-DPPHIFP 116
Query: 557 SVKYCFVPLKTIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA 614
Y + + E + N IDV+G+ V G N + RDI + D S A
Sbjct: 117 IYIYNLTSFEKVEENVDNRNYLIDVIGMLTQIGA-PHVAGYNNSS--IVRDIFIKDISDA 173
Query: 615 SVTMTLWGKEAETF-------DASNKP-VIAVKAARVSEFQG 648
S+ +TLWG +A F +++NKP VI +F+G
Sbjct: 174 SLKITLWGDQASGFSIDNVCNESNNKPIVIMFVGCLAKQFKG 215
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 14/137 (10%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN--IDV 62
P+ F ++N+ + FT T N D P Y + + E + N IDV
Sbjct: 83 PSRGYFKPVHNNLMIQFTLYTQAKVVN-DPPHIFPIYIYNLTSFEKVEENVDNRNYLIDV 141
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF-------DASN 115
+G+ V G N + RDI + D S AS+ +TLWG +A F +++N
Sbjct: 142 IGMLTQIGA-PHVAGYNNSS--IVRDIFIKDISDASLKITLWGDQASGFSIDNVCNESNN 198
Query: 116 KP-VIAVKAARVSEFQG 131
KP VI +F+G
Sbjct: 199 KPIVIMFVGCLAKQFKG 215
>gi|145498019|ref|XP_001434998.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402126|emb|CAK67601.1| unnamed protein product [Paramecium tetraurelia]
Length = 555
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 99/474 (20%), Positives = 177/474 (37%), Gaps = 84/474 (17%)
Query: 370 SATNRSVLIILELNIIKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNV 429
S T + IL+ N+ KP ++ PQPL + P + + N
Sbjct: 67 SETKKIKYTILKTNLNKPPQQV-----EPQPLKKVKIENFVFSKPIENSIIFDENLINQS 121
Query: 430 AIPRQASAPVVQTHPIVS--LSPYQNKWTIKARVTNKTPIREWN--NARGSGKLFSIDLL 485
++ Q +S L + W ++ R+ +K+ + E+ N+ + F I +L
Sbjct: 122 ITMNKSYLKYFQDQQTISELLVNKKKSWVLEGRIVDKSDMLEFKKKNSNVLSQYFKIIIL 181
Query: 486 DESGEIRATMFNDECN-RFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTV 544
D I +F D+ N + ++EK KVY N ++ N + ++FT + +
Sbjct: 182 DREQGIIPGLFYDKSNLKMFPILEKGKVYLFKNGSVSKDNSNYPK-----SITFTQFSII 236
Query: 545 IPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDA-AELSSVTGKTNQKTYMK 603
D++ +P ISP + D+ G ID+ +L V + + +
Sbjct: 237 QESENDDLPKIPM-------------ISPKKIYDLQGQPIDSIVDLVVVIQEIKTLSDVC 283
Query: 604 RDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG--------NLLLMRE 655
R +T++DQ+ + + L GK+ T +I K Q N +++ +
Sbjct: 284 RQLTVLDQT-GRIVIKLMGKQYVTQIFKKGEIIICKGLTYKTQQNFAYLTSNYNTIILND 342
Query: 656 IQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKA--------------------------- 688
QD + D+ + I + + S K
Sbjct: 343 -QDYNNEVKSLRDWLQEKDIDHIMKPSKNCLKVNLEQLEECVLKKLNEGKSKNNEQMIVI 401
Query: 689 -------------CPSQDCNKKV--IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTN 733
CPS C+ K+ + Q + YRC+KC E N+ I+ V I D
Sbjct: 402 GYLTGMSIFTYPRCPSNRCHSKMEKVPQRDT-YRCKKCYVENNSPQMSFIMNVTIMDEHT 460
Query: 734 SVWVTLFQNEAESILGVTAQEVGESTEDHP--ALKKALFTQYIFRLRAKLEHYN 785
+ T+F + A +LG++A E + TE L + F Q +L+ YN
Sbjct: 461 KIEATVFDDYAVKLLGLSADEYQKLTEQEQRMILYISKFRQQQIKLQVLFNDYN 514
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 118/281 (41%), Gaps = 14/281 (4%)
Query: 48 LKTIAEISPDENIDVLGVCIDA-AELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 106
L I ISP + D+ G ID+ +L V + + + R +T++DQ+ + + L GK
Sbjct: 244 LPKIPMISPKKIYDLQGQPIDSIVDLVVVIQEIKTLSDVCRQLTVLDQT-GRIVIKLMGK 302
Query: 107 EAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIP-ECHKLQGWFSTQTNT 165
+ T +I K Q L+ + ++++ + D E L+ W +
Sbjct: 303 QYVTQIFKKGEIIICKGLTYKTQQNFAYLTSNYNTIILNDQDYNNEVKSLRDWLQEKD-- 360
Query: 166 RFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP 225
+ NL + E ++L G + + I + S TY CP
Sbjct: 361 ----IDHIMKPSKNCLKVNLEQLEECVLKKLNEGKSKNNEQMIVIGYLTGMSIFTYPRCP 416
Query: 226 SQDCNKKV--IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL 283
S C+ K+ + Q + YRC+KC E N+ I+ V I D + T+F + A +L
Sbjct: 417 SNRCHSKMEKVPQRDT-YRCKKCYVENNSPQMSFIMNVTIMDEHTKIEATVFDDYAVKLL 475
Query: 284 GVTAQEVGESTEDHP--ALKKALFTQYIFRLRAKLEHYNGT 322
G++A E + TE L + F Q +L+ YNG+
Sbjct: 476 GLSADEYQKLTEQEQRMILYISKFRQQQIKLQVLFNDYNGS 516
>gi|402217011|gb|EJT97093.1| hypothetical protein DACRYDRAFT_25222 [Dacryopinax sp. DJM-731 SS1]
Length = 430
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 130/311 (41%), Gaps = 40/311 (12%)
Query: 38 MPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTN----------------- 80
+PS+ + + + ++V+GV + E+ +++ K
Sbjct: 65 IPSLSLELTKISLLRAMKVGTEVNVIGVVLHVGEVEAMSEKKRVAGKSGDGESESEEEDP 124
Query: 81 QKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMS 140
+ ++R++ LVD S V + LW A + ++ +K ++ GG +L++
Sbjct: 125 KGERVRREVQLVDDSAHVVRVALWKGRATSMAVKRDSILLLKKVVIAA-HGGISLNVYEK 183
Query: 141 SVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQR--TGGMGGGAA--------GNLLLMRE 190
+ + +P + E L+ + N P + R + G G+ N+L + E
Sbjct: 184 TKVDKDPKVAEGTSLK---NCCNNLASNPQTFRHISSGYSAGSGLFTDIEPRSNVLTIPE 240
Query: 191 IQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEF 250
+Q LG G + D +V G IQV N Y+AC + CNK + + E + +
Sbjct: 241 VQKSNLGTGSRVDTFNVEGRIQVV-DRNAVYEACRNTRCNKSIEKSPRDIEGHEDTSDDN 299
Query: 251 NTFTYRLILPVMIG-DWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----LKKAL 304
F Y L L IG D ++ V++F A+ +L A EV + + P L L
Sbjct: 300 RRFCYHLKL--TIGQDRRRTIDVSVFTPLADKMLEEDATEVVKKRDHMPGQYDEVLGALL 357
Query: 305 FTQYIFRLRAK 315
T++ F ++A+
Sbjct: 358 KTKWRFTIQAR 368
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 9/142 (6%)
Query: 645 EFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNG 704
E + N+L + E+Q LG G + D +V G IQV N Y+AC + CNK +
Sbjct: 230 EPRSNVLTIPEVQKSNLGTGSRVDTFNVEGRIQVV-DRNAVYEACRNTRCNKSIEKSPRD 288
Query: 705 MYRCEKCNKEFNTFTYRLILPVMIG-DWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP 763
+ E + + F Y L L IG D ++ V++F A+ +L A EV + + P
Sbjct: 289 IEGHEDTSDDNRRFCYHLKL--TIGQDRRRTIDVSVFTPLADKMLEEDATEVVKKRDHMP 346
Query: 764 A-----LKKALFTQYIFRLRAK 780
L L T++ F ++A+
Sbjct: 347 GQYDEVLGALLKTKWRFTIQAR 368
>gi|414590353|tpg|DAA40924.1| TPA: hypothetical protein ZEAMMB73_767937 [Zea mays]
Length = 519
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 133/346 (38%), Gaps = 28/346 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI-AEISPDEN-IDVL 63
A + I+ D + FT T + P + P Y P I ++I +DVL
Sbjct: 43 AKTAYKPIDGDKMIQFTIYTIIKP-GSNPPPTFPLYIYQLTPFDEIESQIQHKTKFLDVL 101
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF-------DASNK 116
G + L +V + + RD+ + D S+ ++ +TLW K A +F S K
Sbjct: 102 GTITEVTALKTVHIEGQLSPTIIRDVMIEDLSRKTLKITLWAKRATSFTIQNVYDPVSKK 161
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGG 176
P++A+ + +F G LS + NP IPE Q +T P +Q
Sbjct: 162 PILALFVGCLPKFYKGVYLSGGAACHWYFNPAIPEAEAYQNRHGGETIQLHLP-TQPEHA 220
Query: 177 MGGGAAGNLLLMREIQDQQLGMG-----DKADYCSVRGIIQVFRGSNTTYKACPSQDCNK 231
+ + + +Q L M D C+V + ++ + Y +C C +
Sbjct: 221 LQTFQPPT--IEHKTLEQLLTMNPYDYPDTGYECTV-TVTEIDTSNTWWYPSC--TKCGR 275
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILG----VTA 287
K N Y C+ C + F Y+L D T + F N A I+G V
Sbjct: 276 KTTPHNTTYY-CDLCKWDGYKFKYKLKF--RASDATAIAQMFCFDNIARYIVGKSCEVIL 332
Query: 288 QEVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINS 333
+ ST P L + + ++ FR+ ++ ++P + I S
Sbjct: 333 RSTNASTPIPPDLAQIVSLKFTFRVIPDDSSFDNQDQVPIALRIIS 378
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 10/156 (6%)
Query: 506 MIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPL 565
+IE +++Y IS + A + I+ D + FT T + P + P Y P
Sbjct: 26 LIETNQIYDISRFRVTAAKTAYKPIDGDKMIQFTIYTIIKP-GSNPPPTFPLYIYQLTPF 84
Query: 566 KTI-AEISPDEN-IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
I ++I +DVLG + L +V + + RD+ + D S+ ++ +TLW K
Sbjct: 85 DEIESQIQHKTKFLDVLGTITEVTALKTVHIEGQLSPTIIRDVMIEDLSRKTLKITLWAK 144
Query: 624 EAETF-------DASNKPVIAVKAARVSEFQGNLLL 652
A +F S KP++A+ + +F + L
Sbjct: 145 RATSFTIQNVYDPVSKKPILALFVGCLPKFYKGVYL 180
>gi|70914008|ref|XP_731701.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56501834|emb|CAH83538.1| hypothetical protein PC300559.00.0 [Plasmodium chabaudi chabaudi]
Length = 90
Score = 63.5 bits (153), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 467 IREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKK 526
IR++ GK+F+I+L DESGEI+ F ++++D +E K+Y IS +K ANKK
Sbjct: 1 IRKFYTGNKEGKVFNIELCDESGEIKVNFFGKAVDKWYDYLEVGKIYKISKGNIKSANKK 60
Query: 527 FSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
F+++ +D E++ ++ + E+++ N+P
Sbjct: 61 FNTLKHDCEITLDENSILELLEENDM-NIP 89
>gi|241582412|ref|XP_002403804.1| conserved hypothetical protein [Ixodes scapularis]
gi|215500267|gb|EEC09761.1| conserved hypothetical protein [Ixodes scapularis]
Length = 158
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 10/97 (10%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
DGV +++AML TQLN I D + F +VQ+ +Y+ + +S + +LIILEL +I
Sbjct: 46 DGVKCHTYAMLGTQLNSKIIDKEIERFAVVQLDKYMCNTISP----EKKILIILELTVIA 101
Query: 387 PGTEIGFKIGNP-QPLNTNT-----DNSSTQQTPAAT 417
G ++G K+GNP P +T + ++ +TPA++
Sbjct: 102 NGADVGSKLGNPVMPSSTGAAAPSDGDGASNRTPASS 138
>gi|413948244|gb|AFW80893.1| hypothetical protein ZEAMMB73_324862 [Zea mays]
Length = 455
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 100/226 (44%), Gaps = 28/226 (12%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL--DESG-----EIRATMF 496
PI L+P + I+ RV K E+ A G L I+L+ DE G EI A +
Sbjct: 5 PITELNPQKINVVIRVRVIRK---WEFRGATNDGPLRHINLILADEQGTAIHAEIPAALA 61
Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
++ + +I+ DKVY I + + P+ F ++N+ + FT T N D P
Sbjct: 62 TEKGS----LIQIDKVYEIRHFRVMPSRGYFKPVHNNLMIQFTLYTQAKVVN-DPPHIFP 116
Query: 557 SVKYCFVPLKTIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA 614
Y + + E + N IDV+G+ V G N + RDI + D S A
Sbjct: 117 IYIYNLTSFQKVEENVDNRNYLIDVIGMLTQIGA-PHVAGYNNSS--IVRDIFIKDISDA 173
Query: 615 SVTMTLWGKEAETF-------DASNKP-VIAVKAARVSEFQGNLLL 652
S+ +TLWG +A F +++NKP VI +F+G L
Sbjct: 174 SLKITLWGDQASGFSIDNVCNESNNKPIVIMFVGCLAKQFKGQSYL 219
Score = 43.1 bits (100), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 14/142 (9%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN--IDV 62
P+ F ++N+ + FT T N D P Y + + E + N IDV
Sbjct: 83 PSRGYFKPVHNNLMIQFTLYTQAKVVN-DPPHIFPIYIYNLTSFQKVEENVDNRNYLIDV 141
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF-------DASN 115
+G+ V G N + RDI + D S AS+ +TLWG +A F +++N
Sbjct: 142 IGMLTQIGA-PHVAGYNNSS--IVRDIFIKDISDASLKITLWGDQASGFSIDNVCNESNN 198
Query: 116 KP-VIAVKAARVSEFQGGKTLS 136
KP VI +F+G LS
Sbjct: 199 KPIVIMFVGCLAKQFKGQSYLS 220
>gi|242093032|ref|XP_002437006.1| hypothetical protein SORBIDRAFT_10g016776 [Sorghum bicolor]
gi|241915229|gb|EER88373.1| hypothetical protein SORBIDRAFT_10g016776 [Sorghum bicolor]
Length = 958
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 87/174 (50%), Gaps = 17/174 (9%)
Query: 468 REWN--NARGSGKLFSIDL--LDESGE-IRATMFNDECNRFHDMIEKDKVYYISNCTLKP 522
R W+ + KL DL +DE G I A ++ + +F +I++ VY +S ++
Sbjct: 482 RFWDFYDPHDESKLLHCDLVLIDEEGNCIHAQIYPPDHEQFKPLIKEGSVYNLSYFRVRK 541
Query: 523 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV----KYCFVPLKTIAEISPDENI- 577
+ K + ++ND+ ++FT T+ +EV +P Y P++ + + +
Sbjct: 542 SGK-YRPVDNDHMINFTRWTSA-----EEVVEIPPAFPMYTYSLTPMEQLPPCAEETTFF 595
Query: 578 -DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA 630
DV+GV + +SS+ +T Q +KR +T+ + S AS+ + LWG+ A F A
Sbjct: 596 TDVIGVVTMLSNVSSLRIRTRQSESLKRTVTICNASGASLDVVLWGERATAFPA 649
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 18/162 (11%)
Query: 9 KFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV----KYCFVPLKTIAEISPDENI--DV 62
K+ ++ND+ ++FT T+ +EV +P Y P++ + + + DV
Sbjct: 544 KYRPVDNDHMINFTRWTSA-----EEVVEIPPAFPMYTYSLTPMEQLPPCAEETTFFTDV 598
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF-------DASN 115
+GV + +SS+ +T Q +KR +T+ + S AS+ + LWG+ A F D +
Sbjct: 599 IGVVTMLSNVSSLRIRTRQSESLKRTVTICNASGASLDVVLWGERATAFPAEQVHRDRTT 658
Query: 116 KPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQG 157
+ A V + +LS S +N ++PE L
Sbjct: 659 PQTVIFVGALVKSYADNVSLSGGPSCKWYINFEVPEAKALAA 700
>gi|413943268|gb|AFW75917.1| hypothetical protein ZEAMMB73_045866 [Zea mays]
Length = 426
Score = 62.8 bits (151), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 123/283 (43%), Gaps = 29/283 (10%)
Query: 60 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA------ 113
IDVLG+ + L V G N + RDI L D + S +TLWG +A +F
Sbjct: 45 IDVLGILTEIGSLYHV-GYNNSN--IIRDIFLKDINNTSTKVTLWGHQASSFSVDNICDE 101
Query: 114 -SNKPVIAVKAARVSE-FQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS 171
NKP++ + +++ F+G LS + + NPDIPE Q +++ NT+ + +
Sbjct: 102 NDNKPIVVLFVGCLAKRFKGEAYLSATTACTWYFNPDIPEA---QVYYNKLLNTKLQMIR 158
Query: 172 QRTGGMGGGAAGNLLLMREIQDQQLGMG-----DKADYCSVRGIIQVFRGSNTTYKACPS 226
+ A+ L + + ++ L + ++ C+V I ++ + + +C
Sbjct: 159 PQATKKELQASQTLNIEDKTIEELLQLDPDMFPEQGFKCTVI-ISRLVQDGRWWFPSCIK 217
Query: 227 QDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVT 286
CNK + G Y+C CN F Y+ L + D T+ F A+ I+G +
Sbjct: 218 --CNKSSSQTSTG-YQCTLCNGTETEFRYK--LSFIATDGTSEAEFFCFDTIAKRIVGKS 272
Query: 287 AQEV----GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
Q + G S P L + ++ F + + ++ T ++
Sbjct: 273 CQTLFSTSGVSRGPPPDLAAIVSLKFTFAVTINMSAFSVTNRV 315
>gi|221054360|ref|XP_002258319.1| replication protein a large subunit [Plasmodium knowlesi strain H]
gi|193808388|emb|CAQ39091.1| replication protein a large subunit, putative [Plasmodium knowlesi
strain H]
Length = 493
Score = 62.8 bits (151), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 90/182 (49%), Gaps = 12/182 (6%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNRF 503
I ++ Y +KW IKA+V NKT + + N + FSID+ D G+ I + +++
Sbjct: 18 ISQITTYVSKWIIKAKVVNKTKLSTFKN---NNSFFSIDVTDVHGDSISCKFWGSSADKW 74
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP-SVKYCF 562
+ IE KVY S + AN K++++ + YE++F + + +D G + K
Sbjct: 75 FNNIEMKKVYIFSKGRVSIANPKYNTVKHKYELTFNEDSEIHEVKDD--GEIKIQKKISL 132
Query: 563 VPLKTIAEISPDE---NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
V L+ I +I+ E D++G+ +S++ K K++I +VD ++ S +
Sbjct: 133 VNLRDI-KIATKETPFTADLIGIVKHIGTVSNLKTKQGNDI-AKQNIIIVDDTKHSFEIA 190
Query: 620 LW 621
W
Sbjct: 191 FW 192
Score = 47.0 bits (110), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 70/368 (19%), Positives = 148/368 (40%), Gaps = 67/368 (18%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP-SVKYCFVPLKTIAEISPDEN---ID 61
AN K++++ + YE++F + + +D G + K V L+ I +I+ E D
Sbjct: 94 ANPKYNTVKHKYELTFNEDSEIHEVKDD--GEIKIQKKISLVNLRDI-KIATKETPFTAD 150
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----------KEAETF 111
++G+ +S++ K K++I +VD ++ S + W KE E +
Sbjct: 151 LIGIVKHIGTVSNLKTKQGNDI-AKQNIIIVDDTKHSFEIAFWDSNVNLIKDEIKENEIY 209
Query: 112 DASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDI-PECHKLQGWFSTQTNTRFEPV 170
+N + + G ++ S+ + +LN ++ +C + W++T N ++E
Sbjct: 210 IFTNINIRNWNDMK----NGTFGVTSSIEKIENLNEELKAKCTMISEWYNT--NGKYEQF 263
Query: 171 SQRTGGMGGGAAGNLLLMREIQDQQLGMGDKAD--------YCSVRGIIQVFRGSNTT-- 220
+ + + +I ++ + D D Y V + +++ S
Sbjct: 264 TNMRNILSNDVS-------QIPEKHYALSDVNDVLAKISGTYTLVGRVKRIYWKSKENEH 316
Query: 221 ---YKACPSQDCNKKVI-----------------DQNNGMYRCEKCNKEFNTFTYRLILP 260
Y AC C KK++ D+ +Y C C++ Y
Sbjct: 317 RFYYPACSK--CKKKLLSSGQENVTDNDYETNANDEEGIVYSCMNCDENNVKPYYNYTFN 374
Query: 261 VMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPAL---KKALFTQYIFRLRAKLE 317
+ D++ S+ + +F +E ++LG A+E+ ED+ L+ +Y +R
Sbjct: 375 FLFMDFSGSMNIRVFSDEGYNLLGKKAEELKGLDEDNLNYLFNYDFLYKEYKVVVRVNQR 434
Query: 318 HYNGTKKI 325
YNG +++
Sbjct: 435 LYNGIERV 442
>gi|57899172|dbj|BAD87224.1| DNA binding protein-like [Oryza sativa Japonica Group]
gi|57900302|dbj|BAD87135.1| DNA binding protein-like [Oryza sativa Japonica Group]
Length = 609
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 16/160 (10%)
Query: 485 LDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTV 544
+D I M+ +I + K+YYI + T+K AN+ + ++ND+ + F+ TT+
Sbjct: 33 VDRGNSIHVQMYRGAIEVLKPLIHEGKIYYIESFTVKDANRTYRPVSNDFMILFSKWTTL 92
Query: 545 IPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI---DVLGVCIDAAELSSVTGKTNQKTY 601
C D + P++ + + I + +NI D++GV + + S V ++
Sbjct: 93 EECI-DIPADFPTITFSLTHFQEIPSLV-GKNIFYVDIMGVITEISSTSIVRPRSRDADS 150
Query: 602 MKRDITLVD-----------QSQASVTMTLWGKEAETFDA 630
+KR + + D S +++ +TLWG + FDA
Sbjct: 151 LKRTLQICDASYTNFTVNAKHSNSTLPVTLWGDRSTAFDA 190
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 29/188 (15%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI---DV 62
AN+ + ++ND+ + F+ TT+ C D + P++ + + I + +NI D+
Sbjct: 71 ANRTYRPVSNDFMILFSKWTTLEECI-DIPADFPTITFSLTHFQEIPSLV-GKNIFYVDI 128
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVD-----------QSQASVTMTLWGKEAETF 111
+GV + + S V ++ +KR + + D S +++ +TLWG + F
Sbjct: 129 MGVITEISSTSIVRPRSRDADSLKRTLQICDASYTNFTVNAKHSNSTLPVTLWGDRSTAF 188
Query: 112 DASN-------KP-VIAVKAARVSEFQG-GKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ 162
DA KP V+ V ++ G G T++ S +N DIP+ KL+ FS
Sbjct: 189 DAEKIYKDGQTKPQVVVFVGTLVRDYAGIGLTITGSSPCKWYINLDIPDVLKLKESFSVN 248
Query: 163 TNTRFEPV 170
F+P+
Sbjct: 249 ----FQPI 252
>gi|413934866|gb|AFW69417.1| hypothetical protein ZEAMMB73_473384 [Zea mays]
Length = 317
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 99/228 (43%), Gaps = 32/228 (14%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREW--NNARGSGKLFSIDLL--DESG-----EIRAT 494
PI L P I+ R+ IR+W A G L ++L+ DE G EI+A
Sbjct: 5 PIAELDPKSTNAAIRVRI-----IRKWEFRGATNDGPLRHVNLILADEQGTAIHAEIQAA 59
Query: 495 MFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN 554
+ D+ + +I+ DKVY + + P+ + ++N + FT T +D
Sbjct: 60 LVADKGS----LIQIDKVYELKRFRVAPSRNYYKPVDNSMMIQFTLYTQA-KLVQDPPPT 114
Query: 555 MPSVKYCFVPLKTIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS 612
P Y + I ++ IDVLG+ + L V G N + RDI L D +
Sbjct: 115 FPRYAYKLTSFENIGNNVDNKTYLIDVLGILTEIGSLHHV-GYNNSN--IIRDIFLKDIN 171
Query: 613 QASVTMTLWGKEAETF-------DASNKPVIAVKAARVSE-FQGNLLL 652
S +TLWG +A +F + NKPV+ + +++ F+G L
Sbjct: 172 NTSTKVTLWGHQASSFSVDNNCDENDNKPVVVLFVGCLAKRFKGEAYL 219
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 17/175 (9%)
Query: 4 APANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN--ID 61
AP+ + ++N + FT T +D P Y + I ++ ID
Sbjct: 82 APSRNYYKPVDNSMMIQFTLYTQA-KLVQDPPPTFPRYAYKLTSFENIGNNVDNKTYLID 140
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF-------DAS 114
VLG+ + L V G N + RDI L D + S +TLWG +A +F +
Sbjct: 141 VLGILTEIGSLHHV-GYNNSN--IIRDIFLKDINNTSTKVTLWGHQASSFSVDNNCDEND 197
Query: 115 NKPVIAVKAARVSE-FQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFE 168
NKPV+ + +++ F+G LS + + NPDIPE Q ++S NT+ +
Sbjct: 198 NKPVVVLFVGCLAKRFKGEAYLSATAACTWYFNPDIPEA---QVYYSKLVNTKLQ 249
>gi|9294533|dbj|BAB02796.1| replication protein A1-like [Arabidopsis thaliana]
Length = 581
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 99/218 (45%), Gaps = 29/218 (13%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARG-SGKLFSIDLLDESGE-IRATMFNDECNR 502
+ + PY+ W ++ + + W +G+ + DE+G+ I ++ D ++
Sbjct: 8 LTDVRPYKTSWRVQVKT-----LHAWRQYTANTGETLEVVFSDETGKKIHCSVRKDLVSK 62
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC- 561
+ +M+ + +I +L A F ++ Y+MSF + T+VIP PSV
Sbjct: 63 YANMLTVGEWVFIETFSLNYAGGSFRPTSHLYKMSFVNGTSVIPS--------PSVSDSN 114
Query: 562 FVPLKTI-----AEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
++ L T E++P +DV+G + EL + + N K K D + D S +
Sbjct: 115 YLTLATFEKIQSGELNPTMLVDVIGQIVMIGELEEL--EANNKPTTKIDFDIRDASDERI 172
Query: 617 TMTLWGKEAETF-----DASNKPVIAV-KAARVSEFQG 648
+TLWG A+ +A +PV+ V + ++ ++G
Sbjct: 173 GVTLWGTFAQQVYRGCNEAGARPVVCVLRFVKIKSYKG 210
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 126/329 (38%), Gaps = 74/329 (22%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC-FVPLKTI-----AEISPDEN 59
A F ++ Y+MSF + T+VIP PSV ++ L T E++P
Sbjct: 83 AGGSFRPTSHLYKMSFVNGTSVIPS--------PSVSDSNYLTLATFEKIQSGELNPTML 134
Query: 60 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF-----DAS 114
+DV+G + EL + + N K K D + D S + +TLWG A+ +A
Sbjct: 135 VDVIGQIVMIGELEEL--EANNKPTTKIDFDIRDASDERIGVTLWGTFAQQVYRGCNEAG 192
Query: 115 NKPVIAV-KAARVSEFQGGKTLSLSM-SSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQ 172
+PV+ V + ++ ++G + LS S +S + +NP PE R P
Sbjct: 193 ARPVVCVLRFVKIKSYKGVRNLSNSFDASQVFVNPQFPEVDAF---------LRTLP--- 240
Query: 173 RTGGMGGGAAGNLLLMRE-IQDQQLGMGDKADYC--SVRGIIQVFRGSNTTYKA------ 223
G LL RE I ++ + K+D C R IQ + KA
Sbjct: 241 --------QDGILLTYRERIPKLEIVVSKKSDSCLEYPRNTIQQLLNAVDVGKARLMCTI 292
Query: 224 -----------CPSQDCNKKVIDQNNGM-----------YRCEKCNKEFNTFTYRLILPV 261
+ CNKKV ++G+ + C+ C R ++
Sbjct: 293 YAIDTDWAWYYISCRACNKKVTHIHSGVHGVNNKGKKPRFWCDSCKTVVTNVIARYMIYA 352
Query: 262 MIGDWTNSVWVTLFQNEAESILGVTAQEV 290
+ D T + LF I+G TA V
Sbjct: 353 KVMDNTGESKLLLFDQICTEIIGETAPSV 381
>gi|284434672|gb|ADB85379.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 305
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 84/188 (44%), Gaps = 9/188 (4%)
Query: 448 LSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL--DESGE-IRATMFNDECNRFH 504
++P WT+ ARV+ + E+ ++ +DL+ DE G I A + +
Sbjct: 9 INPTSKHWTVCARVSR---LWEYRGNVDDAEIQHLDLVLVDEQGNAIYAEIPKEHVEAKR 65
Query: 505 DMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP 564
+++++ +Y + P K+ +++DY + + T + D P Y P
Sbjct: 66 VLLQEEHIYTFRRFLVSPNKGKYRPVDSDYMIEIGYYTEIEELF-DAAPTFPMYAYTLTP 124
Query: 565 LKTI-AEISPDEN-IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
L+ + + I N +DV+GV + +S+ G T KR + + D T+TLWG
Sbjct: 125 LENLDSYIGETRNFLDVIGVVKAVSNAASIQGSNQSSTTTKRLVVIKDAKDCETTVTLWG 184
Query: 623 KEAETFDA 630
+ A+ FD
Sbjct: 185 QRAKDFDG 192
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 11/162 (6%)
Query: 1 MLAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI-AEISPDEN 59
L +P K+ +++DY + + T + D P Y PL+ + + I N
Sbjct: 79 FLVSPNKGKYRPVDSDYMIEIGYYTEIEELF-DAAPTFPMYAYTLTPLENLDSYIGETRN 137
Query: 60 -IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS---- 114
+DV+GV + +S+ G T KR + + D T+TLWG+ A+ FD
Sbjct: 138 FLDVIGVVKAVSNAASIQGSNQSSTTTKRLVVIKDAKDCETTVTLWGQRAKDFDGEYVYE 197
Query: 115 ---NKPVIAVKAARVSEFQG-GKTLSLSMSSVLSLNPDIPEC 152
PV A+ + + G + LS + ++P+IPE
Sbjct: 198 KEQKNPVPALFVGILMKRYGQNEGLSGGSACRWYISPNIPEA 239
>gi|402223354|gb|EJU03419.1| hypothetical protein DACRYDRAFT_106579 [Dacryopinax sp. DJM-731
SS1]
Length = 326
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 106/234 (45%), Gaps = 19/234 (8%)
Query: 69 AAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSE 128
A + S+ T QK+ M ++ +VD+ V +T+W A+ F + V+ V + V E
Sbjct: 7 ALDGSTQQASTKQKSRMLCEVQVVDKEGHVVRVTMWNSRAKIFSGKHGQVLHVMNS-VVE 65
Query: 129 FQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL--- 185
+GG TL+ S + LNP I E +L+ WF+ F+ + + G G L
Sbjct: 66 HRGGVTLNSSEKTEFPLNPKIEEADELKQWFTDG----FDEAALKHISCGYSKEGGLTST 121
Query: 186 --------LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQN 237
L +++ +LG GD DY ++ I F+ Y++C Q C ++ ++++
Sbjct: 122 TLEELPKVLTKAQVRASRLGHGDCIDYFNMVENISGFQ-EGIMYQSCGFQGC-RESLEKH 179
Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW-VTLFQNEAESILGVTAQEV 290
G ++ + + Y+ + G+ N V +T+F I+G A E+
Sbjct: 180 KGDCPVKEHTPQPDEKQYKYKIGFTTGEDENKVMLLTVFSPAGTMIIGAPATEM 233
>gi|78101555|pdb|2B29|A Chain A, N-Terminal Domain Of The Rpa70 Subunit Of Human
Replication Protein A.
gi|82407984|pdb|2B3G|A Chain A, P53n (Fragment 33-60) Bound To Rpa70n
Length = 123
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
DG+N S MLATQLN ++ + LS + QI R+IV+ + G R V+I++EL ++K
Sbjct: 51 DGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDG----RRVVILMELEVLK 106
Query: 387 PGTEIGFKIGNPQPLN 402
+G KIGNP P N
Sbjct: 107 SAEAVGVKIGNPVPYN 122
>gi|413943366|gb|AFW76015.1| hypothetical protein ZEAMMB73_328795 [Zea mays]
Length = 378
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 123/324 (37%), Gaps = 26/324 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI-AEISPDEN-IDVL 63
A + I+ D + FT T + P + + P Y P I ++I +DVL
Sbjct: 53 AKTTYKPIDGDKMIQFTTYTIIKPAS-NPPPTFPLYIYQLTPFDEIESQIQHKTKFLDVL 111
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF-------DASNK 116
G + L +V + + RD+ + D S+ ++ +TLW K A +F S K
Sbjct: 112 GTITEVTALKTVHIQGQLNPTIIRDVMIEDLSRKTLKITLWAKRATSFTIQDVYDPVSKK 171
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGG 176
P++A+ + +F G LS + NP IPE Q +T P +
Sbjct: 172 PILALFVGCLPKFYKGVYLSGGAACHWYFNPTIPEAEAYQNRRGGETIQLHLPTQPKHAL 231
Query: 177 MGGGAAGNLLLMREIQDQQLGMG--DKAD--YCSVRGIIQVFRGSNTTYKACPSQDCNKK 232
+ + +Q L M D D Y I ++ + Y +C C +K
Sbjct: 232 QTFQPPT---IEHKTLEQLLTMNPYDYPDTGYECTATITEIDTSNTWWYPSC--TKCGRK 286
Query: 233 VIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILG----VTAQ 288
N Y C+ C + F Y+L D T + F N A I+G V +
Sbjct: 287 TTPHNIAYY-CDWCKWDGYKFKYKLKF--RASDATAMAQMFCFDNIARYIVGKSCEVILR 343
Query: 289 EVGESTEDHPALKKALFTQYIFRL 312
+T P L + + ++ FR+
Sbjct: 344 STNAATPIPPDLAQIVPLKFTFRV 367
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 10/156 (6%)
Query: 506 MIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPL 565
+IE +++Y IS + A + I+ D + FT T + P + + P Y P
Sbjct: 36 LIETNQIYDISRFRVTAAKTTYKPIDGDKMIQFTTYTIIKPAS-NPPPTFPLYIYQLTPF 94
Query: 566 KTI-AEISPDEN-IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
I ++I +DVLG + L +V + + RD+ + D S+ ++ +TLW K
Sbjct: 95 DEIESQIQHKTKFLDVLGTITEVTALKTVHIQGQLNPTIIRDVMIEDLSRKTLKITLWAK 154
Query: 624 EAETF-------DASNKPVIAVKAARVSEFQGNLLL 652
A +F S KP++A+ + +F + L
Sbjct: 155 RATSFTIQDVYDPVSKKPILALFVGCLPKFYKGVYL 190
>gi|68077085|ref|XP_680462.1| replication factor A-related protein [Plasmodium berghei strain
ANKA]
gi|56501391|emb|CAH98106.1| replication factor A-related protein, putative [Plasmodium berghei]
Length = 514
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 90/431 (20%), Positives = 169/431 (39%), Gaps = 100/431 (23%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNRF 503
I ++ Y +KW IKA+V NK+ + + N + FSID+ D G+ I + +++
Sbjct: 38 ISQITTYVSKWIIKAKVVNKSKLSTFKN---NNSFFSIDITDVHGDSISCKFWGSSADKW 94
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSVKYCF 562
+ IE KVY S + AN K++++ + YE++F + + +D E+ ++
Sbjct: 95 FNNIELKKVYIFSKGRVSIANPKYNTVKHKYELTFNEDSEIHEVKDDGEIKIQKNISLVN 154
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
+ IA D++G+ +++ K +K++I +VD ++ S ++ W
Sbjct: 155 LRDIKIATKETPFTADLIGIVKHICPPNNLKTKQGNDI-IKQNIIIVDDTKHSFEISFWD 213
Query: 623 ----------KEAETFDASNKPV--------------------------IAVKAARVSEF 646
KE E + +N + + K +SE+
Sbjct: 214 SNVNLIEKDLKENEIYIFTNISIRNWNDMKNGTFGVTSSIEKVENLNDELKEKCLGISEW 273
Query: 647 QG------------NLLLMREIQ--DQQLGMGDKAD--------YCSVRGIIQVFRGSNT 684
N+L IQ D+ + D D Y V I +++ S
Sbjct: 274 YNNNGKYEQFTNMKNILSNDVIQTPDKHYALSDVNDVLAKISGTYTLVGRIKRIYWKSKE 333
Query: 685 T-----YKACPSQDCNKKVI------------------DQNNGMYRCEKCN----KEFNT 717
Y AC C KK++ ++ N +Y C C+ K F
Sbjct: 334 NEHRFYYPACTK--CKKKLLSSGQDSAQGVDYDNSNFNNEENCVYSCMNCDENNVKPFYN 391
Query: 718 FTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE---VGESTEDHPALKKALFTQYI 774
+T+ + D++ S+ + F +E ++LG A+E + E T D+ L+ +Y
Sbjct: 392 YTFNFLFM----DFSGSITLRAFSDEGFNLLGKKAEELKGLDEDTLDYLFNYDFLYKEYK 447
Query: 775 FRLRAKLEHYN 785
+R + YN
Sbjct: 448 VVVRVSQKIYN 458
Score = 47.0 bits (110), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 74/392 (18%), Positives = 155/392 (39%), Gaps = 74/392 (18%)
Query: 3 AAPANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSVKYCFVPLKTIAEISPDENID 61
+ AN K++++ + YE++F + + +D E+ ++ + IA D
Sbjct: 111 VSIANPKYNTVKHKYELTFNEDSEIHEVKDDGEIKIQKNISLVNLRDIKIATKETPFTAD 170
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----------KEAETF 111
++G+ +++ K +K++I +VD ++ S ++ W KE E +
Sbjct: 171 LIGIVKHICPPNNLKTKQGNDI-IKQNIIIVDDTKHSFEISFWDSNVNLIEKDLKENEIY 229
Query: 112 DASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPE-CHKLQGWFSTQTNTRFEPV 170
+N + + G ++ S+ V +LN ++ E C + W++ N ++E
Sbjct: 230 IFTNISIRNWNDMK----NGTFGVTSSIEKVENLNDELKEKCLGISEWYNN--NGKYEQF 283
Query: 171 SQRTGGMGGGAAGNLLLMREIQDQQLGMGDKAD--------YCSVRGIIQVFRGSNTT-- 220
+ + + D+ + D D Y V I +++ S
Sbjct: 284 TNMKNILSNDVI-------QTPDKHYALSDVNDVLAKISGTYTLVGRIKRIYWKSKENEH 336
Query: 221 ---YKACPSQDCNKKVI------------------DQNNGMYRCEKCN----KEFNTFTY 255
Y AC C KK++ ++ N +Y C C+ K F +T+
Sbjct: 337 RFYYPACTK--CKKKLLSSGQDSAQGVDYDNSNFNNEENCVYSCMNCDENNVKPFYNYTF 394
Query: 256 RLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE---VGESTEDHPALKKALFTQYIFRL 312
+ D++ S+ + F +E ++LG A+E + E T D+ L+ +Y +
Sbjct: 395 NFLFM----DFSGSITLRAFSDEGFNLLGKKAEELKGLDEDTLDYLFNYDFLYKEYKVVV 450
Query: 313 RAKLEHYNGTKKIPDGVNINSFAMLATQLNDI 344
R + YNG ++ VN + + + +DI
Sbjct: 451 RVSQKIYNGIER----VNFTAMRIFPQKYSDI 478
>gi|413952084|gb|AFW84733.1| hypothetical protein ZEAMMB73_599002 [Zea mays]
Length = 289
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 96/222 (43%), Gaps = 20/222 (9%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL--DESG-EIRATMFNDEC 500
PI L+P + I+ RV K E+ A G L I+L+ DE G I A +
Sbjct: 5 PITELNPQKINVVIRVRVIRKW---EFRGATNDGPLRHINLILADEQGTAIHAEIPAALA 61
Query: 501 NRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKY 560
+ +I+ DKVY I + + P+ F ++N+ + FT T N D P Y
Sbjct: 62 IQKGSLIQIDKVYEIRHFRVMPSRGYFRPVHNNLMIQFTLYTQAKVVN-DPPHIFPIYIY 120
Query: 561 CFVPLKTIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM 618
+ + E + N IDV+G+ V G N + RDI + D S AS+ +
Sbjct: 121 NLTSFEKVEENVDNRNYLIDVIGMLTQIGA-PHVAGYNNSS--IVRDIFIKDISDASLKI 177
Query: 619 TLWGKEAETF-------DASNKP-VIAVKAARVSEFQGNLLL 652
LWG +A F +++NKP VI +F+G L
Sbjct: 178 MLWGDQASGFSIDNVCNESNNKPIVIMFVGCLAKQFKGQSYL 219
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 14/160 (8%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN--IDV 62
P+ F ++N+ + FT T N D P Y + + E + N IDV
Sbjct: 83 PSRGYFRPVHNNLMIQFTLYTQAKVVN-DPPHIFPIYIYNLTSFEKVEENVDNRNYLIDV 141
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF-------DASN 115
+G+ V G N + RDI + D S AS+ + LWG +A F +++N
Sbjct: 142 IGMLTQIGA-PHVAGYNNSS--IVRDIFIKDISDASLKIMLWGDQASGFSIDNVCNESNN 198
Query: 116 KP-VIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHK 154
KP VI +F+G LS + ++ NP+IPE +
Sbjct: 199 KPIVIMFVGCLAKQFKGQSYLSSTTATTWYFNPNIPEAQE 238
>gi|297596199|ref|NP_001042171.2| Os01g0175300 [Oryza sativa Japonica Group]
gi|255672925|dbj|BAF04085.2| Os01g0175300 [Oryza sativa Japonica Group]
Length = 523
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/373 (21%), Positives = 146/373 (39%), Gaps = 69/373 (18%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNR 502
PI L P + + I R++ R N + K + LLD+ G+ I A + D
Sbjct: 5 PIAELRPGRYDYMICVRISRIWEFR-GTNEDDNIKHLDLVLLDQKGDAIYAEIPPDAIPL 63
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
+ +++ + YIS T+ A + ++ N Y + T +I +D+ + P +
Sbjct: 64 LNQYLQEGNIVYISKITVNNAKPSYRAVGNPYMIKLNKRTCIIEA-KDQPMDFPKYTFDL 122
Query: 563 VPLKTIAEISP--DENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTL 620
V + + + D +DV+G I A +++ ++ M+R + L D S ++ ++L
Sbjct: 123 VSFDKLHDFTSKTDRFLDVIGKII-AVSNAAMISTSSSDYRMRRIVKLQDLSGKTIDLSL 181
Query: 621 WGKEAETFDAS-------NKPVIAV-------------------KAAR----------VS 644
GK A FD N +IA+ A R +
Sbjct: 182 SGKRAVEFDGETILEVGQNNHIIAIFVGTSMKILKGTYEFLSGTTACRWYINENDIPEIK 241
Query: 645 EFQGNL---------LLMREIQDQQLGMGDKA---------------DYCSVRGIIQVFR 680
FQ L L ++ +D Q + K Y II +
Sbjct: 242 MFQKCLPPHADPIQKLYLQSDEDMQRSIEHKTLAELKEIDPFVDKDEKYQCTATIIGIQE 301
Query: 681 GSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLF 740
Y+AC + CN K+I + + +C+K N + Y+ +P + D T S+ + LF
Sbjct: 302 RKTWCYQAC--KLCNCKMI-WDGSILKCKKENCPCRQYEYKYKIPFIANDGTASLELVLF 358
Query: 741 QNEAESILGVTAQ 753
+ + ++G TA+
Sbjct: 359 EKKGTELIGRTAE 371
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 121/295 (41%), Gaps = 19/295 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISP--DENIDVL 63
A + ++ N Y + T +I +D+ + P + V + + + D +DV+
Sbjct: 84 AKPSYRAVGNPYMIKLNKRTCIIEA-KDQPMDFPKYTFDLVSFDKLHDFTSKTDRFLDVI 142
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS-------NK 116
G I A +++ ++ M+R + L D S ++ ++L GK A FD N
Sbjct: 143 GKII-AVSNAAMISTSSSDYRMRRIVKLQDLSGKTIDLSLSGKRAVEFDGETILEVGQNN 201
Query: 117 PVIAVKAARVSEFQGG--KTLSLSMSSVLSLNP-DIPECHKLQGWFSTQTNTRFEPVSQR 173
+IA+ + G + LS + + +N DIPE Q + + Q
Sbjct: 202 HIIAIFVGTSMKILKGTYEFLSGTTACRWYINENDIPEIKMFQKCLPPHADPIQKLYLQS 261
Query: 174 TGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKV 233
M L E+++ + Y II + Y+AC + CN K+
Sbjct: 262 DEDMQRSIEHKTLA--ELKEIDPFVDKDEKYQCTATIIGIQERKTWCYQAC--KLCNCKM 317
Query: 234 IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 288
I + + +C+K N + Y+ +P + D T S+ + LF+ + ++G TA+
Sbjct: 318 I-WDGSILKCKKENCPCRQYEYKYKIPFIANDGTASLELVLFEKKGTELIGRTAE 371
>gi|22857582|gb|AAN09856.1| putative DNA binding protein [Oryza sativa Japonica Group]
gi|31430721|gb|AAP52594.1| hypothetical protein LOC_Os10g11780 [Oryza sativa Japonica Group]
Length = 454
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 88/176 (50%), Gaps = 23/176 (13%)
Query: 457 IKARVTNKTPIREWN--NARGSGKLFSIDL--LDESG-EIRATMFNDECNRFHDMIEKDK 511
I ARV+ R WN + K+F DL LDE G I A ++ + +++++K
Sbjct: 18 IHARVS-----RLWNFTDLNDDTKIFHTDLVLLDEIGTSIHAQIYPPITEKMKPLLKEEK 72
Query: 512 VYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVG---NMPSVKYCFVPLKTI 568
VYYI + T++ AN+ + + N+ + F+ TT+ E+ + + PS+ + P + +
Sbjct: 73 VYYIDSFTIRAANRTYRPVANNLMILFSKWTTL----EEHINVPPHFPSITFSLTPFEDV 128
Query: 569 AEISPDEN--IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVD----QSQASVTM 618
+ + +D++GV + ++++ K+ +KR + + D Q+QA V +
Sbjct: 129 PSLVEKNSFYVDIMGVITEVGAVTTIRPKSRNAESLKRTLQIRDASAGQTQAQVVV 184
>gi|24960752|gb|AAN65446.1| Putative helicase [Oryza sativa Japonica Group]
gi|108706525|gb|ABF94320.1| hypothetical protein LOC_Os03g08400 [Oryza sativa Japonica Group]
Length = 764
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/373 (21%), Positives = 146/373 (39%), Gaps = 69/373 (18%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNR 502
PI L P + + I R++ R N + K + LLD+ G+ I A + D
Sbjct: 246 PIAELRPGRYDYMICVRISRIWEFR-GTNEDDNIKHLDLVLLDQKGDAIYAEIPPDAIPL 304
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
+ +++ + YIS T+ A + ++ N Y + T +I +D+ + P +
Sbjct: 305 LNQYLQEGNIVYISKITVNNAKPSYRAVGNPYMIKLNKRTCIIEA-KDQPMDFPKYTFDL 363
Query: 563 VPLKTIAEISP--DENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTL 620
V + + + D +DV+G I A +++ ++ M+R + L D S ++ ++L
Sbjct: 364 VSFDKLHDFTSKTDRFLDVIGKII-AVSNAAMISTSSSDYRMRRIVKLQDLSGKTIDLSL 422
Query: 621 WGKEAETFDAS-------NKPVIAV-------------------KAAR----------VS 644
GK A FD N +IA+ A R +
Sbjct: 423 SGKRAVEFDGETILEVGQNNHIIAIFVGTSMKILKGTYEFLSGTTACRWYINENDIPEIK 482
Query: 645 EFQGNL---------LLMREIQDQQLGMGDKA---------------DYCSVRGIIQVFR 680
FQ L L ++ +D Q + K Y II +
Sbjct: 483 MFQKCLPPHADPIQKLYLQSDEDMQRSIEHKTLAELKEIDPFVDKDEKYQCTATIIGIQE 542
Query: 681 GSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLF 740
Y+AC + CN K+I + + +C+K N + Y+ +P + D T S+ + LF
Sbjct: 543 RKTWCYQAC--KLCNCKMI-WDGSILKCKKENCPCRQYEYKYKIPFIANDGTASLELVLF 599
Query: 741 QNEAESILGVTAQ 753
+ + ++G TA+
Sbjct: 600 EKKGTELIGRTAE 612
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 121/295 (41%), Gaps = 19/295 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISP--DENIDVL 63
A + ++ N Y + T +I +D+ + P + V + + + D +DV+
Sbjct: 325 AKPSYRAVGNPYMIKLNKRTCIIEA-KDQPMDFPKYTFDLVSFDKLHDFTSKTDRFLDVI 383
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS-------NK 116
G I A +++ ++ M+R + L D S ++ ++L GK A FD N
Sbjct: 384 GKII-AVSNAAMISTSSSDYRMRRIVKLQDLSGKTIDLSLSGKRAVEFDGETILEVGQNN 442
Query: 117 PVIAVKAARVSEFQGG--KTLSLSMSSVLSLNP-DIPECHKLQGWFSTQTNTRFEPVSQR 173
+IA+ + G + LS + + +N DIPE Q + + Q
Sbjct: 443 HIIAIFVGTSMKILKGTYEFLSGTTACRWYINENDIPEIKMFQKCLPPHADPIQKLYLQS 502
Query: 174 TGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKV 233
M L E+++ + Y II + Y+AC + CN K+
Sbjct: 503 DEDMQRSIEHKTL--AELKEIDPFVDKDEKYQCTATIIGIQERKTWCYQAC--KLCNCKM 558
Query: 234 IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 288
I + + +C+K N + Y+ +P + D T S+ + LF+ + ++G TA+
Sbjct: 559 I-WDGSILKCKKENCPCRQYEYKYKIPFIANDGTASLELVLFEKKGTELIGRTAE 612
>gi|62733874|gb|AAX95983.1| hypothetical protein LOC_Os11g13920 [Oryza sativa Japonica Group]
gi|77549546|gb|ABA92343.1| AT hook motif-containing protein, putative [Oryza sativa Japonica
Group]
Length = 2157
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 40/210 (19%)
Query: 457 IKARVTNKTPIREWN--NARGSGKLFSIDL--LDESG-EIRATMFNDECNRFHDMIEKDK 511
I ARV+ R W+ + GSG +F DL LD+ G I A ++ + ++++ K
Sbjct: 1596 ILARVS-----RLWDFCDLNGSGNIFHTDLVLLDQMGNSIHAQIYPPAIDSLRPLLKEQK 1650
Query: 512 VYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI 571
VYYI + T+ K+++ E + P + + P I +
Sbjct: 1651 VYYIDSFTVS----KWTTFEEYIE---------------PAADFPGITFSLTPFSDIPNL 1691
Query: 572 SPDENI----------DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
D+ I DV+GV + + V K+ +KR I + D S +++ +TLW
Sbjct: 1692 V-DKTIFYVGLYGMQPDVMGVITEVGSPTVVRPKSRNADSLKRTIQICDASNSTMPVTLW 1750
Query: 622 GKEAETFDASNKPVIAVKAARVSEFQGNLL 651
G+ A+ FDA++ A+V F G L+
Sbjct: 1751 GERADAFDANSVYNAGQTQAQVIVFVGTLV 1780
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 24/158 (15%)
Query: 33 DEVGNMPSVKYCFVPLKTIAEISPDENI----------DVLGVCIDAAELSSVTGKTNQK 82
+ + P + + P I + D+ I DV+GV + + V K+
Sbjct: 1670 EPAADFPGITFSLTPFSDIPNLV-DKTIFYVGLYGMQPDVMGVITEVGSPTVVRPKSRNA 1728
Query: 83 TYMKRDITLVDQSQASVTMTLWGKEAETFDA--------SNKPVIAVKAARVSEFQG-GK 133
+KR I + D S +++ +TLWG+ A+ FDA + VI V ++ G G
Sbjct: 1729 DSLKRTIQICDASNSTMPVTLWGERADAFDANSVYNAGQTQAQVIVFVGTLVKDYTGLGL 1788
Query: 134 TLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS 171
T++ S LN DIPE +L+ FS F PVS
Sbjct: 1789 TVTGSSPCKWYLNLDIPEVLELKESFSAN----FRPVS 1822
>gi|413954915|gb|AFW87564.1| hypothetical protein ZEAMMB73_967726 [Zea mays]
Length = 289
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 28/222 (12%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL--DESG-----EIRATMF 496
PI L+P + I+ RV K E+ A G L I+L+ DE G EI A +
Sbjct: 5 PITELNPQKINVVIRVRVIRK---WEFRGATNDGPLRHINLILADEQGTAIHAEIPAALA 61
Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
++ + +I+ D VY I + + P+ F ++N+ + FT T N D P
Sbjct: 62 IEKGS----LIQIDIVYEIRHFRVMPSRGYFKPVHNNLMIQFTLYTQAKVVN-DPPHIFP 116
Query: 557 SVKYCFVPLKTIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA 614
Y + + E + N IDV+G+ V G N + RDI + D S A
Sbjct: 117 IYIYNLTSFEKVEENVDNRNYLIDVIGMLTQIGA-PHVAGYNNSS--IVRDIFIKDISDA 173
Query: 615 SVTMTLWGKEAETF-------DASNKP-VIAVKAARVSEFQG 648
S+ +TLWG +A F +++NKP VI +F+G
Sbjct: 174 SLKITLWGDQASGFSIDNVCNESNNKPIVIMFVGCLAKQFKG 215
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 14/160 (8%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN--IDV 62
P+ F ++N+ + FT T N D P Y + + E + N IDV
Sbjct: 83 PSRGYFKPVHNNLMIQFTLYTQAKVVN-DPPHIFPIYIYNLTSFEKVEENVDNRNYLIDV 141
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF-------DASN 115
+G+ V G N + RDI + D S AS+ +TLWG +A F +++N
Sbjct: 142 IGMLTQIGA-PHVAGYNNSS--IVRDIFIKDISDASLKITLWGDQASGFSIDNVCNESNN 198
Query: 116 KP-VIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHK 154
KP VI +F+G LS + ++ NP+IPE +
Sbjct: 199 KPIVIMFVGCLAKQFKGQSYLSSTTATTWYFNPNIPEAQE 238
>gi|108864598|gb|ABA94881.2| AT hook motif-containing protein, putative [Oryza sativa Japonica
Group]
Length = 2157
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 40/210 (19%)
Query: 457 IKARVTNKTPIREWN--NARGSGKLFSIDL--LDESG-EIRATMFNDECNRFHDMIEKDK 511
I ARV+ R W+ + GSG +F DL LD+ G I A ++ + ++++ K
Sbjct: 1596 ILARVS-----RLWDFCDLNGSGNIFHTDLVLLDQMGNSIHAQIYPPAIDSLRPLLKEQK 1650
Query: 512 VYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI 571
VYYI + T+ K+++ E + P + + P I +
Sbjct: 1651 VYYIDSFTVS----KWTTFEEYIE---------------PAADFPGITFSLTPFSDIPNL 1691
Query: 572 SPDENI----------DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
D+ I DV+GV + + V K+ +KR I + D S +++ +TLW
Sbjct: 1692 V-DKTIFYVGLYGMQPDVMGVITEVGSPTVVRPKSRNADSLKRTIQICDASNSTMPVTLW 1750
Query: 622 GKEAETFDASNKPVIAVKAARVSEFQGNLL 651
G+ A+ FDA++ A+V F G L+
Sbjct: 1751 GERADAFDANSVYNAGQTQAQVIVFVGTLV 1780
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 24/158 (15%)
Query: 33 DEVGNMPSVKYCFVPLKTIAEISPDENI----------DVLGVCIDAAELSSVTGKTNQK 82
+ + P + + P I + D+ I DV+GV + + V K+
Sbjct: 1670 EPAADFPGITFSLTPFSDIPNLV-DKTIFYVGLYGMQPDVMGVITEVGSPTVVRPKSRNA 1728
Query: 83 TYMKRDITLVDQSQASVTMTLWGKEAETFDA--------SNKPVIAVKAARVSEFQG-GK 133
+KR I + D S +++ +TLWG+ A+ FDA + VI V ++ G G
Sbjct: 1729 DSLKRTIQICDASNSTMPVTLWGERADAFDANSVYNAGQTQAQVIVFVGTLVKDYTGLGL 1788
Query: 134 TLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS 171
T++ S LN DIPE +L+ FS F P+S
Sbjct: 1789 TVTGSSPCKWYLNLDIPEVLELKESFSAN----FRPIS 1822
>gi|38346787|emb|CAE02205.2| OSJNBa0095H06.12 [Oryza sativa Japonica Group]
Length = 1724
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 13/204 (6%)
Query: 455 WTIKARVTNKTPIREWNNARGSGKL--FSIDLL--DESG-EIRATMFNDECNRFHDMIEK 509
W I+AR+ R W+ + + +DL+ DE G + A + E ++F ++++
Sbjct: 1261 WKIRARIA-----RMWDYTGTANDVPPMHVDLVLVDEKGNAMYAEIPGVEADKFRPLLQE 1315
Query: 510 DKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIA 569
KVY S + P+ + N Y + T T V NE + PS + V ++
Sbjct: 1316 SKVYTFSKFLVLPSKPAYKPFPNKYMIKLTPWTNVEQVNEVP-ADFPSHVFNLVQFSDLS 1374
Query: 570 E-ISPDENI-DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET 627
+ + E DV+G+ I ++L+ V + KR I L D + V + LWG+ A
Sbjct: 1375 QRVGMQEYFTDVIGMIIGVSKLAYVRMASKTSDTPKRVIALRDLANCEVKLVLWGEHALD 1434
Query: 628 FDASNKPVIAVKAARVSEFQGNLL 651
FDA + V F G L+
Sbjct: 1435 FDADAVHSVGQDNVVVGIFVGTLM 1458
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 9/163 (5%)
Query: 1 MLAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE-ISPDEN 59
L P+ + N Y + T T V NE + PS + V +++ + E
Sbjct: 1324 FLVLPSKPAYKPFPNKYMIKLTPWTNVEQVNEVP-ADFPSHVFNLVQFSDLSQRVGMQEY 1382
Query: 60 I-DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPV 118
DV+G+ I ++L+ V + KR I L D + V + LWG+ A FDA
Sbjct: 1383 FTDVIGMIIGVSKLAYVRMASKTSDTPKRVIALRDLANCEVKLVLWGEHALDFDADAVHS 1442
Query: 119 IAVKAARVSEFQG------GKTLSLSMSSVLSLNPDIPECHKL 155
+ V F G KTLS + LN DIPE ++
Sbjct: 1443 VGQDNVVVGIFVGTLMKAYNKTLSGGSACKWYLNEDIPEINQF 1485
>gi|70952412|ref|XP_745376.1| replication factor A-related protein [Plasmodium chabaudi chabaudi]
gi|56525679|emb|CAH78783.1| replication factor A-related protein, putative [Plasmodium chabaudi
chabaudi]
Length = 482
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 90/427 (21%), Positives = 165/427 (38%), Gaps = 92/427 (21%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNRF 503
I ++ Y +KW IKA+V NK+ + + N + FSID+ D G+ I + +++
Sbjct: 5 ISQITTYVSKWIIKAKVVNKSKLSTFKN---NNSFFSIDITDVHGDSISCKFWGSSADKW 61
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSVKYCF 562
+ IE KVY S + AN K++++ + YE++F + + +D E+ ++
Sbjct: 62 FNNIELKKVYIFSKGRVSIANPKYNNVKHKYELTFNEDSEIHEVKDDGEIKIQKNISLVN 121
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
+ IA D++G+ +++ K +K++I +VD ++ S ++ W
Sbjct: 122 LRDIKIATKETPFTADLIGIVKHICPPNNLKTKQGNDI-VKQNIIIVDDTKHSFEISFWD 180
Query: 623 ----------KEAETFDASNKPV--------------------------IAVKAARVSEF 646
KE E + +N + + K +SE+
Sbjct: 181 SNVNLIEKDLKENEIYIFTNISIRNWNDMKNGTFGVTSSIEKVENLNDELKNKCLGISEW 240
Query: 647 QG------------NLLLMREIQ--DQQLGMGDKAD--------YCSVRGIIQVFRGSNT 684
N+L IQ D+ + D D Y V I +++ S
Sbjct: 241 YNNNGKYEQFTNMKNILSNDVIQTPDKHYAVSDVNDVLGKISGTYTLVGRIKRIYWKSKE 300
Query: 685 T-----YKACPSQDCNKKVI----DQNNGM--------------YRCEKCNKEFNTFTYR 721
Y AC C KK++ D GM Y C C++ Y
Sbjct: 301 NEHRFYYPACTK--CKKKLLSSGQDNTQGMDYDNSNFNNDESCVYSCMNCDENDVKPFYN 358
Query: 722 LILPVMIGDWTNSVWVTLFQNEAESILGVTAQE---VGESTEDHPALKKALFTQYIFRLR 778
+ D++ S+ + F +E ++LG A+E + E T D+ L+ +Y +R
Sbjct: 359 YTFNFLFMDFSGSITLRAFSDEGFNLLGKKAEELKGLDEDTLDYLFNYDFLYKEYKVVVR 418
Query: 779 AKLEHYN 785
+ YN
Sbjct: 419 VSQKIYN 425
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 77/390 (19%), Positives = 154/390 (39%), Gaps = 70/390 (17%)
Query: 3 AAPANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSVKYCFVPLKTIAEISPDENID 61
+ AN K++++ + YE++F + + +D E+ ++ + IA D
Sbjct: 78 VSIANPKYNNVKHKYELTFNEDSEIHEVKDDGEIKIQKNISLVNLRDIKIATKETPFTAD 137
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----------KEAETF 111
++G+ +++ K +K++I +VD ++ S ++ W KE E +
Sbjct: 138 LIGIVKHICPPNNLKTKQGNDI-VKQNIIIVDDTKHSFEISFWDSNVNLIEKDLKENEIY 196
Query: 112 DASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIP-ECHKLQGWFSTQTNTRFEPV 170
+N + + G ++ S+ V +LN ++ +C + W++ N ++E
Sbjct: 197 IFTNISIRNWNDMK----NGTFGVTSSIEKVENLNDELKNKCLGISEWYNN--NGKYEQF 250
Query: 171 SQRTGGMGGGAAGNLLLMREIQ--DQQLGMGDKAD--------YCSVRGIIQVFRGSNTT 220
+ N+L IQ D+ + D D Y V I +++ S
Sbjct: 251 TN---------MKNILSNDVIQTPDKHYAVSDVNDVLGKISGTYTLVGRIKRIYWKSKEN 301
Query: 221 -----YKACPSQDCNKKVI----DQNNGM--------------YRCEKCNKEFNTFTYRL 257
Y AC C KK++ D GM Y C C++ Y
Sbjct: 302 EHRFYYPACTK--CKKKLLSSGQDNTQGMDYDNSNFNNDESCVYSCMNCDENDVKPFYNY 359
Query: 258 ILPVMIGDWTNSVWVTLFQNEAESILGVTAQE---VGESTEDHPALKKALFTQYIFRLRA 314
+ D++ S+ + F +E ++LG A+E + E T D+ L+ +Y +R
Sbjct: 360 TFNFLFMDFSGSITLRAFSDEGFNLLGKKAEELKGLDEDTLDYLFNYDFLYKEYKVVVRV 419
Query: 315 KLEHYNGTKKIPDGVNINSFAMLATQLNDI 344
+ YNG ++ VN + + + +DI
Sbjct: 420 SQKIYNGIER----VNFTAMRIFPQKYSDI 445
>gi|82594604|ref|XP_725495.1| replication protein A large subunit [Plasmodium yoelii yoelii
17XNL]
gi|23480523|gb|EAA17060.1| replication protein A large subunit, putative [Plasmodium yoelii
yoelii]
Length = 487
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 87/427 (20%), Positives = 166/427 (38%), Gaps = 92/427 (21%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNRF 503
I ++ Y +KW IKA+V NK+ + + N + FSID+ D G+ I + +++
Sbjct: 10 ISQITTYVSKWIIKAKVVNKSKLSTFKN---NNSFFSIDITDVHGDSISCKFWGSSADKW 66
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSVKYCF 562
+ IE KVY S + AN K++++ + YE++F + + +D E+ ++
Sbjct: 67 FNNIELKKVYIFSKGRVSIANPKYNTVKHKYELTFNEDSEIHEVKDDGEIKIQKNISLVN 126
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
+ IA D++G+ +++ K +K++I +VD ++ S ++ W
Sbjct: 127 LRDIKIATKETPFTADLIGIVKHICPPNNLKTKQGNDI-IKQNIIIVDDTKHSFEISFWD 185
Query: 623 ----------KEAETFDASNKPV--------------------------IAVKAARVSEF 646
KE E + +N + + K +SE+
Sbjct: 186 SNVNLIEKDLKENEIYIFTNISIRNWNDMKNGTFGVTSSIEKVENLNDELKEKCLGISEW 245
Query: 647 QG------------NLLLMREIQ--DQQLGMGDKAD--------YCSVRGIIQVFRGSNT 684
N+L IQ D+ + D D Y V I +++ S
Sbjct: 246 YNNNGKYEQFTNMKNILSNDVIQTPDKHYALSDVNDVLTKISGTYTLVGRIKRIYWKSKE 305
Query: 685 T-----YKACPSQDCNKKVI------------------DQNNGMYRCEKCNKEFNTFTYR 721
Y AC C KK++ ++ N +Y C C++ Y
Sbjct: 306 NEHRFYYPACTK--CKKKLLSSGQDNTQGGDYDNSNFNNEENCVYSCMNCDENNVKPFYN 363
Query: 722 LILPVMIGDWTNSVWVTLFQNEAESILGVTAQE---VGESTEDHPALKKALFTQYIFRLR 778
+ D++ S+ + F +E ++LG A+E + E + D+ L+ +Y +R
Sbjct: 364 YTFNFLFMDFSGSITLRAFSDEGFNLLGKKAEELKGLDEDSLDYLFNYDFLYKEYKVVVR 423
Query: 779 AKLEHYN 785
+ YN
Sbjct: 424 VSQKIYN 430
Score = 45.8 bits (107), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 75/390 (19%), Positives = 155/390 (39%), Gaps = 70/390 (17%)
Query: 3 AAPANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSVKYCFVPLKTIAEISPDENID 61
+ AN K++++ + YE++F + + +D E+ ++ + IA D
Sbjct: 83 VSIANPKYNTVKHKYELTFNEDSEIHEVKDDGEIKIQKNISLVNLRDIKIATKETPFTAD 142
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----------KEAETF 111
++G+ +++ K +K++I +VD ++ S ++ W KE E +
Sbjct: 143 LIGIVKHICPPNNLKTKQGNDI-IKQNIIIVDDTKHSFEISFWDSNVNLIEKDLKENEIY 201
Query: 112 DASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPE-CHKLQGWFSTQTNTRFEPV 170
+N + + G ++ S+ V +LN ++ E C + W++ N ++E
Sbjct: 202 IFTNISIRNWNDMK----NGTFGVTSSIEKVENLNDELKEKCLGISEWYNN--NGKYEQF 255
Query: 171 SQRTGGMGGGAAGNLLLMREIQ--DQQLGMGDKAD--------YCSVRGIIQVFRGSNTT 220
+ N+L IQ D+ + D D Y V I +++ S
Sbjct: 256 TN---------MKNILSNDVIQTPDKHYALSDVNDVLTKISGTYTLVGRIKRIYWKSKEN 306
Query: 221 -----YKACPSQDCNKKVI------------------DQNNGMYRCEKCNKEFNTFTYRL 257
Y AC C KK++ ++ N +Y C C++ Y
Sbjct: 307 EHRFYYPACTK--CKKKLLSSGQDNTQGGDYDNSNFNNEENCVYSCMNCDENNVKPFYNY 364
Query: 258 ILPVMIGDWTNSVWVTLFQNEAESILGVTAQE---VGESTEDHPALKKALFTQYIFRLRA 314
+ D++ S+ + F +E ++LG A+E + E + D+ L+ +Y +R
Sbjct: 365 TFNFLFMDFSGSITLRAFSDEGFNLLGKKAEELKGLDEDSLDYLFNYDFLYKEYKVVVRV 424
Query: 315 KLEHYNGTKKIPDGVNINSFAMLATQLNDI 344
+ YNG ++ VN + + + +DI
Sbjct: 425 SQKIYNGIER----VNFTAMRIFPQKYSDI 450
>gi|38424033|dbj|BAD01693.1| DNA binding protein-like [Oryza sativa Japonica Group]
gi|38637631|dbj|BAD03911.1| DNA binding protein-like [Oryza sativa Japonica Group]
Length = 445
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 19/174 (10%)
Query: 457 IKARVTNKTPIREWN--NARGSGKLFSIDL--LDESG-EIRATMFNDECNRFHDMIEKDK 511
I ARV+ R W+ + GSG +F DL LD+ G I A ++ + ++++ K
Sbjct: 18 ILARVS-----RLWDFCDLNGSGNIFHTDLVLLDQMGNSIHAQIYPPAIDSLRPLLKEQK 72
Query: 512 VYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI 571
VYYI + T++ AN+ + ++N + F+ TT E + P + + P I +
Sbjct: 73 VYYIDSFTVRYANRTYRPVDNSLMIVFSKWTTFEEYIE-PAADFPGITFSLTPFSDIPNL 131
Query: 572 SPDENI---DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVD----QSQASVTM 618
D+ I DV+GV + + V K+ +KR I + D Q+QA V +
Sbjct: 132 V-DKTIFYVDVMGVITEVGSPTVVRPKSRNADSLKRTIQICDASAGQTQAQVIV 184
>gi|435849849|ref|YP_007301790.1| single-stranded DNA-binding protein [Methanomethylovorans
hollandica DSM 15978]
gi|433663337|gb|AGB50762.1| single-stranded DNA-binding protein [Methanomethylovorans
hollandica DSM 15978]
Length = 381
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 98/216 (45%), Gaps = 16/216 (7%)
Query: 411 QQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREW 470
Q AT T + G +++ I +++ + I + ++ + +V ++ +
Sbjct: 142 QAKDGATGTQINIGTKDSICISQESVQATIPQKKISEIKNNESNIYLIVKVLKIGDVKTF 201
Query: 471 NNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSI 530
N G+GKL +I L D+SG++ AT++ND+ + D+ D + ++ A K++
Sbjct: 202 NKKNGTGKLRNISLGDDSGKVNATLWNDKADLSPDIKVGDSLL------IRNATAKYNDF 255
Query: 531 NNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELS 590
+ E+ ST++ N + V K FVP I +++ + + G ID +E+
Sbjct: 256 SKSVELQIGDSTSIEKTNNNVV-----FKEAFVP---INQVTVGKKYSIKGNIIDISEIR 307
Query: 591 SVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE 626
+ + Q + +V + + +TLWGK E
Sbjct: 308 EFSNDSGQLNSVGN--IVVKDNTGQIKVTLWGKNTE 341
>gi|413948878|gb|AFW81527.1| hypothetical protein ZEAMMB73_249157 [Zea mays]
Length = 575
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 79/365 (21%), Positives = 134/365 (36%), Gaps = 58/365 (15%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPD-----ENI 60
A + I+ D + FT T + P + P+ L EI + +
Sbjct: 90 AKTAYKPIDGDKMIQFTIYTIIKPASNPP----PTFSLYIYQLTPFDEIESQIQHKTKFL 145
Query: 61 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN----- 115
DVLG + L +V + + RDI + D S+ ++ +TLW K A +F N
Sbjct: 146 DVLGTITEVTALKTVHIEGQLSPTIIRDIMIEDLSRKTLKITLWAKRATSFTIQNVYDPV 205
Query: 116 --KPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQR 173
KP++A+ + +F G LS + NP IPE Q +++
Sbjct: 206 SKKPILALFVGCLPKFYKGVYLSGGAACHWYFNPAIPEAEAYQN-----------SITKY 254
Query: 174 TGGMGGGAAGNLLLMREIQD---------------QQLGMGDKADY------CSVRGIIQ 212
GG L L + + +QL + DY C+V + +
Sbjct: 255 YAYKHGGETIQLHLPTQPEHALQTFQPPTIEHKTLEQLLTMNPYDYPDTGYECTV-TVTE 313
Query: 213 VFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWV 272
+ + Y +C C +K N Y C+ C + F Y+L D T +
Sbjct: 314 IDTSNTWWYPSC--TKCGRKTTPHNTTYY-CDLCKWDGYKFKYKLKF--RASDATAIAQM 368
Query: 273 TLFQNEAESILG----VTAQEVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDG 328
F N A I+G V + +T P L + + ++ FR+ ++ ++P
Sbjct: 369 FCFDNIARYIVGKSCKVILRSTNAATPIPPDLAQIVSLKFTFRVIPDDSSFDNQDQVPIA 428
Query: 329 VNINS 333
+ I S
Sbjct: 429 LRIIS 433
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 96/226 (42%), Gaps = 34/226 (15%)
Query: 448 LSPYQNKWTIKARVTNKTPIREW--NNARGSGKLFSIDLL--DESG-----EIRATMFND 498
L+ Y+ I+ V+ R+W + A +G L ID++ D G EI A + +
Sbjct: 15 LTTYKKHAIIQVHVS-----RKWSFHGATENGPLQHIDMVLSDCKGNSMYAEIPANLAEE 69
Query: 499 ECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV 558
+ +IE +++Y IS + A + I+ D + FT T + P + P+
Sbjct: 70 KGA----LIETNQIYDISRFRVTAAKTAYKPIDGDKMIQFTIYTIIKPASNPP----PTF 121
Query: 559 KYCFVPLKTIAEISPD-----ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ 613
L EI + +DVLG + L +V + + RDI + D S+
Sbjct: 122 SLYIYQLTPFDEIESQIQHKTKFLDVLGTITEVTALKTVHIEGQLSPTIIRDIMIEDLSR 181
Query: 614 ASVTMTLWGKEAETFDASN-------KPVIAVKAARVSEFQGNLLL 652
++ +TLW K A +F N KP++A+ + +F + L
Sbjct: 182 KTLKITLWAKRATSFTIQNVYDPVSKKPILALFVGCLPKFYKGVYL 227
>gi|312082357|ref|XP_003143411.1| hypothetical protein LOAG_07830 [Loa loa]
Length = 163
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 210 IIQVFRGSNTTYKACPSQDCNKKV-IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTN 268
I+ + S T++ CP+ C KK+ ++++N +Y C KC N + Y L + + D+T
Sbjct: 3 FIEKYSSSYRTFQGCPT--CKKKLLVEKDNDLYICSKCGI-CNEYKYYYTLHMELFDFTG 59
Query: 269 SVWVTLFQNEAESILGVTAQEVG-----ESTEDHPALKKALFTQYIFRLRAK 315
+V VT F + A+ ++G A EV +S + K LF Y+FRL A+
Sbjct: 60 TVHVTAFDDCAQKLIGEQADEVAKFLKFDSERYQSSFKSVLFKPYMFRLGAQ 111
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 675 IIQVFRGSNTTYKACPSQDCNKKV-IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTN 733
I+ + S T++ CP+ C KK+ ++++N +Y C KC N + Y L + + D+T
Sbjct: 3 FIEKYSSSYRTFQGCPT--CKKKLLVEKDNDLYICSKCGI-CNEYKYYYTLHMELFDFTG 59
Query: 734 SVWVTLFQNEAESILGVTAQEVG-----ESTEDHPALKKALFTQYIFRLRAK 780
+V VT F + A+ ++G A EV +S + K LF Y+FRL A+
Sbjct: 60 TVHVTAFDDCAQKLIGEQADEVAKFLKFDSERYQSSFKSVLFKPYMFRLGAQ 111
>gi|222628302|gb|EEE60434.1| hypothetical protein OsJ_13642 [Oryza sativa Japonica Group]
Length = 479
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 13/204 (6%)
Query: 455 WTIKARVTNKTPIREWNNARGSGKL--FSIDLL--DESG-EIRATMFNDECNRFHDMIEK 509
W I+AR+ R W+ + + +DL+ DE G + A + E ++F ++++
Sbjct: 16 WKIRARIA-----RMWDYTGTANDVPPMHVDLVLVDEKGNAMYAEIPGVEADKFRPLLQE 70
Query: 510 DKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIA 569
KVY S + P+ + N Y + T T V NE + PS + V ++
Sbjct: 71 SKVYTFSKFLVLPSKPAYKPFPNKYMIKLTPWTNVEQVNEVP-ADFPSHVFNLVQFSDLS 129
Query: 570 E-ISPDENI-DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET 627
+ + E DV+G+ I ++L+ V + KR I L D + V + LWG+ A
Sbjct: 130 QRVGMQEYFTDVIGMIIGVSKLAYVRMASKTSDTPKRVIALRDLANCEVKLVLWGEHALD 189
Query: 628 FDASNKPVIAVKAARVSEFQGNLL 651
FDA + V F G L+
Sbjct: 190 FDADAVHSVGQDNVVVGIFVGTLM 213
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 9/163 (5%)
Query: 1 MLAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE-ISPDEN 59
L P+ + N Y + T T V NE + PS + V +++ + E
Sbjct: 79 FLVLPSKPAYKPFPNKYMIKLTPWTNVEQVNEVP-ADFPSHVFNLVQFSDLSQRVGMQEY 137
Query: 60 I-DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPV 118
DV+G+ I ++L+ V + KR I L D + V + LWG+ A FDA
Sbjct: 138 FTDVIGMIIGVSKLAYVRMASKTSDTPKRVIALRDLANCEVKLVLWGEHALDFDADAVHS 197
Query: 119 IAVKAARVSEFQG------GKTLSLSMSSVLSLNPDIPECHKL 155
+ V F G KTLS + LN DIPE ++
Sbjct: 198 VGQDNVVVGIFVGTLMKAYNKTLSGGSACKWYLNEDIPEINQF 240
>gi|296084703|emb|CBI25845.3| unnamed protein product [Vitis vinifera]
Length = 131
Score = 58.9 bits (141), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 200 DKADYCSVRGIIQVFRGSNTT-YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLI 258
DK + S+R I + T Y+AC + CNKKV Y CE C K + + R I
Sbjct: 38 DKPSFFSIRAYISFIKPDQTMWYRACKT--CNKKVTGAIGSGYWCEGCQKNDDECSLRYI 95
Query: 259 LPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
+ V + D + W+++F +AE I G +A E
Sbjct: 96 MVVKVSDASGEAWLSMFNEQAERIFGCSADE 126
Score = 58.9 bits (141), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 665 DKADYCSVRGIIQVFRGSNTT-YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLI 723
DK + S+R I + T Y+AC + CNKKV Y CE C K + + R I
Sbjct: 38 DKPSFFSIRAYISFIKPDQTMWYRACKT--CNKKVTGAIGSGYWCEGCQKNDDECSLRYI 95
Query: 724 LPVMIGDWTNSVWVTLFQNEAESILGVTAQE 754
+ V + D + W+++F +AE I G +A E
Sbjct: 96 MVVKVSDASGEAWLSMFNEQAERIFGCSADE 126
>gi|115470979|ref|NP_001059088.1| Os07g0190600 [Oryza sativa Japonica Group]
gi|34394551|dbj|BAC83855.1| DNA binding protein-like [Oryza sativa Japonica Group]
gi|113610624|dbj|BAF21002.1| Os07g0190600 [Oryza sativa Japonica Group]
Length = 544
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 140/327 (42%), Gaps = 32/327 (9%)
Query: 8 KKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEIS--PDENIDVLGV 65
KK +++ + Y + FT T V + G++P + FV + + E + P+ +DV+G
Sbjct: 86 KKLNAVPSTYAIFFTPWTIVEEIPTEISGSLPLYIFNFVDFEDLDERARHPNGLVDVIGQ 145
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD--------ASNKP 117
L G ++R++ L D S + +TLW + A +F+ ++P
Sbjct: 146 LTVVHPLVQSNGLNGPS--VRRNVELRDLSDRLLEITLWAEHATSFEDEFLIETIGKDEP 203
Query: 118 VIAVKAA-RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR-FEPVSQRTG 175
VI V A + F G + S ++ +N DIPE + F T R E + +
Sbjct: 204 VIIVFAGLNMKLFSGAPSCRSSAATKWYINIDIPEINA----FRTSLQGRGCEVLLVPSD 259
Query: 176 GMGGGAAGNLLLMREIQDQQLGMG--DKADY---CSVRGIIQVFRGSNTTYKACPSQDCN 230
G GAA R+ + L + D D C R I ++ S YKAC C
Sbjct: 260 GAALGAANEADANRKSISELLSLNPHDNNDVRFTCDAR-IKEIDVSSGWWYKAC--SICR 316
Query: 231 KKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 290
K V G + C C+ T L V+I D T+ + +F AE ++ TA ++
Sbjct: 317 KGVKPTLQG-FECVNCDNTEPIITPSYKLNVVIEDNTDRAKIFMFGGMAEQVVRRTAADL 375
Query: 291 GESTEDH----PALKKALF-TQYIFRL 312
E + + P+ +AL +++F++
Sbjct: 376 VEESSANQLLLPSPLRALIGRRFVFQI 402
>gi|321454312|gb|EFX65488.1| hypothetical protein DAPPUDRAFT_117249 [Daphnia pulex]
Length = 236
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSV-LIILELN 383
I DG ++ MLATQLN ++ DG L FTI+++K+++ + + +I+L +
Sbjct: 32 ISDGKYSYAYGMLATQLNHLVVDGQLENFTIIKVKKFVNKVATKADDGKKEYKIILLYIE 91
Query: 384 IIKPGTEIGFKIGNPQPL 401
+ PG+E+G KIGN Q L
Sbjct: 92 PLVPGSEVGEKIGNLQTL 109
Score = 39.3 bits (90), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 12/114 (10%)
Query: 33 DEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDIT-- 90
+E P++ + VP + + D +DV+G+ + ++E KTN+ + R +T
Sbjct: 117 EEAAEKPTITFNSVPFDQLPNLENDNVVDVIGLVLYSSEFVLGNHKTNE---VSRYLTAK 173
Query: 91 LVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTL-SLSMSSVL 143
LVD + V ++L + ++ ++A+ A++S GG+ L +LS ++VL
Sbjct: 174 LVDSTNTEVKLSL------SIKVEDQCIVALNGAKISNNFGGRYLETLSCNAVL 221
>gi|222619510|gb|EEE55642.1| hypothetical protein OsJ_04010 [Oryza sativa Japonica Group]
Length = 321
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 10/153 (6%)
Query: 484 LLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHST 542
L+DE G + A + E ++F ++++ KVY S + P+ + N Y + T T
Sbjct: 20 LIDEKGNAMYAEIPGVEADKFRPLLQESKVYTFSKFLILPSKPAYKPFPNKYMIKLTPWT 79
Query: 543 TVIPCNEDEVGNMPS-----VKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTN 597
V NE + PS V++ ++ L+ + + DV+G+ I ++L+ V +
Sbjct: 80 NVEQVNEVP-ADFPSHVFNLVQFSYLSLRVGMQ---EYFTDVIGMIIGVSKLAYVRMASK 135
Query: 598 QKTYMKRDITLVDQSQASVTMTLWGKEAETFDA 630
KR I L D + V + LWG+ A FDA
Sbjct: 136 TSDTPKRVIALRDLANCEVKLVLWGEHAPDFDA 168
Score = 45.8 bits (107), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 17/168 (10%)
Query: 1 MLAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPS-----VKYCFVPLKTIAEIS 55
L P+ + N Y + T T V NE + PS V++ ++ L+ +
Sbjct: 55 FLILPSKPAYKPFPNKYMIKLTPWTNVEQVNEVP-ADFPSHVFNLVQFSYLSLRVGMQ-- 111
Query: 56 PDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN 115
+ DV+G+ I ++L+ V + KR I L D + V + LWG+ A FDA
Sbjct: 112 -EYFTDVIGMIIGVSKLAYVRMASKTSDTPKRVIALRDLANCEVKLVLWGEHAPDFDADA 170
Query: 116 KPVIAVKAARVSEF--------QGGKTLSLSMSSVLSLNPDIPECHKL 155
+ A V F +TLS + LN DIPE ++
Sbjct: 171 VHSVGQDNAVVGIFVDTLMKAYNNEETLSGGSACKWYLNEDIPEINQF 218
>gi|343957969|emb|CCA30601.1| replication factor A protein 1 homolog, partial [Glomus etunicatum]
Length = 181
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 84/197 (42%), Gaps = 40/197 (20%)
Query: 133 KTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAGNLLLMREI 191
K LS + S+VL NP +PE +L W+ST + F ++ +TGG L
Sbjct: 1 KGLSTTNSTVLITNPSLPEATELSEWYSTGGSQLEFNSLASQTGGSINIKEAQKSLEEIK 60
Query: 192 QDQQLGMGD---KADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNK 248
D+ LG+ K Y V II V VID N +
Sbjct: 61 SDKTLGLKKILAKRKYLEV-AIIGV-------------------VIDVQNHL-------- 92
Query: 249 EFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----ALKKA 303
T TYR ILP+ I D ++SVW+ F A ILG+ A + + + P +K
Sbjct: 93 ---TPTYRYILPIRITDHSDSVWMNCFDETAALILGMPADDFRKLRDIDPYGYENHIKNQ 149
Query: 304 LFTQYIFRLRAKLEHYN 320
L++ ++R +L+ +N
Sbjct: 150 LWSLTYLKVRTQLKTFN 166
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 717 TFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----ALKKALFT 771
T TYR ILP+ I D ++SVW+ F A ILG+ A + + + P +K L++
Sbjct: 93 TPTYRYILPIRITDHSDSVWMNCFDETAALILGMPADDFRKLRDIDPYGYENHIKNQLWS 152
Query: 772 QYIFRLRAKLEHYNK 786
++R +L+ +N+
Sbjct: 153 LTYLKVRTQLKTFNE 167
>gi|413917703|gb|AFW57635.1| hypothetical protein ZEAMMB73_449704 [Zea mays]
Length = 459
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 101/234 (43%), Gaps = 38/234 (16%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREW--NNARGSGKLFSIDLL--DES----------- 488
PI L+P + I+ RV IR+W A G L I+L+ DE
Sbjct: 5 PITELNPQKINVVIRVRV-----IRKWEFRGATNDGPLRHINLILADEQVIIFFKGTAIH 59
Query: 489 GEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
EI A + ++ + +I+ DKVY I + + P+ F ++N+ + FT T N
Sbjct: 60 AEIPAALAIEKGS----LIQIDKVYEIRHFRVMPSRGYFKPVHNNLMIQFTLYTQAKVVN 115
Query: 549 EDEVGNMPSVKYCFVPLKTIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQKTYMKRDI 606
D P Y + + E + N IDV+G+ + V G N + RDI
Sbjct: 116 -DPPHIFPIYIYNLTSFEKVEENVDNRNYLIDVIGMLTQISA-PHVVGYNNSS--IVRDI 171
Query: 607 TLVDQSQASVTMTLWGKEAETF-------DASNKP-VIAVKAARVSEFQGNLLL 652
+ D S AS+ +TLWG +A F +++NKP VI +F+G L
Sbjct: 172 FIKDISDASLKITLWGDQASGFSINNVCNESNNKPIVIMFVGCLAKQFKGQSYL 225
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 14/160 (8%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN--IDV 62
P+ F ++N+ + FT T N D P Y + + E + N IDV
Sbjct: 89 PSRGYFKPVHNNLMIQFTLYTQAKVVN-DPPHIFPIYIYNLTSFEKVEENVDNRNYLIDV 147
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF-------DASN 115
+G+ + V G N + RDI + D S AS+ +TLWG +A F +++N
Sbjct: 148 IGMLTQISA-PHVVGYNNSS--IVRDIFIKDISDASLKITLWGDQASGFSINNVCNESNN 204
Query: 116 KP-VIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHK 154
KP VI +F+G LS + ++ NP+IPE +
Sbjct: 205 KPIVIMFVGCLAKQFKGQSYLSGTTATTWYFNPNIPEAQE 244
>gi|413943162|gb|AFW75811.1| hypothetical protein ZEAMMB73_150897 [Zea mays]
Length = 228
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 95/224 (42%), Gaps = 38/224 (16%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL--DESG-----EIRATMF 496
PI L+P + I+ RV K E+ A G L I+L+ DE G EI A +
Sbjct: 5 PITELNPQKINVVIRVRVIRKW---EFRGATNDGPLRHINLILADEQGTTIHAEIPAALA 61
Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
++ + +I+ DKVY I + + P+ F ++N+ + FT T N D P
Sbjct: 62 TEKGS----LIQIDKVYEIRHFRVMPSRGYFKPVHNNLMIQFTLYTQAKVVN-DPPHIFP 116
Query: 557 SVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
Y + + +EN+D I SS+ RDI + D S AS+
Sbjct: 117 IYIYNLTSFEKV-----EENVDNRNYLIAGYNNSSIV----------RDIFIKDISDASL 161
Query: 617 TMTLWGKEAETF-------DASNKP-VIAVKAARVSEFQGNLLL 652
+TLWG +A F ++NKP VI +F+G L
Sbjct: 162 KITLWGDQASGFSIDNVCNQSNNKPIVIMFVGCLAKQFKGQSYL 205
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 66/158 (41%), Gaps = 24/158 (15%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
P+ F ++N+ + FT T N D P Y + + +EN+D
Sbjct: 83 PSRGYFKPVHNNLMIQFTLYTQAKVVN-DPPHIFPIYIYNLTSFEKV-----EENVDNRN 136
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF-------DASNKP 117
I SS+ RDI + D S AS+ +TLWG +A F ++NKP
Sbjct: 137 YLIAGYNNSSIV----------RDIFIKDISDASLKITLWGDQASGFSIDNVCNQSNNKP 186
Query: 118 -VIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHK 154
VI +F+G LS + ++ NP+IPE +
Sbjct: 187 IVIMFVGCLAKQFKGQSYLSGTTATTWYFNPNIPEAQE 224
>gi|345489644|ref|XP_003426189.1| PREDICTED: replication factor A protein 1-like [Nasonia
vitripennis]
Length = 187
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 77/154 (50%), Gaps = 4/154 (2%)
Query: 495 MFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN 554
MF+++C+ FH +I++D +Y N +KP N F+++ E+ T T + ED +
Sbjct: 1 MFDNDCDEFHPLIQEDNIYEFRNMLMKPTNSNFNNLGTLCELCCTQFTEIRKV-EDSDLD 59
Query: 555 MPSVKYC--FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS 612
+ K F L+ I E+ P + + + I + ++V ++ K D+ + D +
Sbjct: 60 VSHYKSSSNFKTLEGI-EMMPKGTLIDIKIAIKEVKDAAVVTNNQGTSFDKLDVIIYDNT 118
Query: 613 QASVTMTLWGKEAETFDASNKPVIAVKAARVSEF 646
+ S T+ LWG +++ + +++ A+V E+
Sbjct: 119 KDSFTLVLWGLKSKENKYPINSIWSIRGAKVGEY 152
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 4/162 (2%)
Query: 1 MLAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC--FVPLKTIAEISPDE 58
ML P N F+++ E+ T T + ED ++ K F L+ I E+ P
Sbjct: 24 MLMKPTNSNFNNLGTLCELCCTQFTEIRKV-EDSDLDVSHYKSSSNFKTLEGI-EMMPKG 81
Query: 59 NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPV 118
+ + + I + ++V ++ K D+ + D ++ S T+ LWG +++ +
Sbjct: 82 TLIDIKIAIKEVKDAAVVTNNQGTSFDKLDVIIYDNTKDSFTLVLWGLKSKENKYPINSI 141
Query: 119 IAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFS 160
+++ A+V E+ K + +S +S + +LQ W S
Sbjct: 142 WSIRGAKVGEYGDKKYIQCVTTSTISQDLTSELSLRLQSWIS 183
>gi|77555599|gb|ABA98395.1| hypothetical protein LOC_Os12g27380 [Oryza sativa Japonica Group]
Length = 609
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 91/207 (43%), Gaps = 28/207 (13%)
Query: 439 VVQTHPIVS-LSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDL--LDESGEIRAT- 494
V H ++S L P + I ARV+ R+ N+ + DL LDE R T
Sbjct: 199 VQMAHALISQLYPGDSDKKILARVSRLWHFRDLND---DTNILHTDLVLLDEVNTKRITK 255
Query: 495 ----------------MFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSF 538
M+ +I + VYYI + T+K AN+ + ++ND+ + F
Sbjct: 256 IVYHIQNLKGNSTHVQMYRGAIEVLKPLIHEGNVYYIESFTVKDANRTYRPVSNDFMILF 315
Query: 539 THSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI---DVLGVCIDAAELSSVTGK 595
+ TT+ C D + P++ + P + I + D+NI D++GV + + S+V +
Sbjct: 316 SKWTTLEEC-IDIPADFPAITFSLTPFQEIPSLV-DKNIFYVDIMGVITEISSTSTVRPR 373
Query: 596 TNQKTYMKRDITLVDQSQASVTMTLWG 622
+ +KR + + D S +T+ G
Sbjct: 374 SRDADSLKRTLQICDASSLYTGLTITG 400
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI---DV 62
AN+ + ++ND+ + F+ TT+ C D + P++ + P + I + D+NI D+
Sbjct: 300 ANRTYRPVSNDFMILFSKWTTLEEC-IDIPADFPAITFSLTPFQEIPSLV-DKNIFYVDI 357
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 105
+GV + + S+V ++ +KR + + D S +T+ G
Sbjct: 358 MGVITEISSTSTVRPRSRDADSLKRTLQICDASSLYTGLTITG 400
>gi|70936883|ref|XP_739325.1| replication factor a protein [Plasmodium chabaudi chabaudi]
gi|56516237|emb|CAH77169.1| replication factor a protein, putative [Plasmodium chabaudi
chabaudi]
Length = 255
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 100/225 (44%), Gaps = 37/225 (16%)
Query: 132 GKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREI 191
GK L + + ++P++ + + L+ W++ + ++ T NL + I
Sbjct: 2 GKKLESHPKTKVEIDPELDKAYTLKNWWANNKKNVYNTINLATSTSNNNML-NLESQKTI 60
Query: 192 QD--------QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVI--------- 234
Q+ + + K + G I S Y ACP +CNKK++
Sbjct: 61 QEIKKNVNLANEEVLSGKGIIFTTFGFIDHIYNSIPVYSACP--NCNKKMVATVIEDGEQ 118
Query: 235 --DQN--NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL-GVTAQE 289
D+N MY C KCNK N Y + + I D T+S+ V+ F N A++I+ G++A+E
Sbjct: 119 DMDENVSESMY-CSKCNKN-NIPVYNYSINLKITDNTDSLRVSAFANAAKTIMNGLSAEE 176
Query: 290 V---------GESTEDHPALKKALFTQYIFRLRAKL-EHYNGTKK 324
E+ E+ ++KA ++ FR++A + H + KK
Sbjct: 177 FMKLRQEHISQENIENFDLIEKAKLNEFFFRIKAYMTSHMDEIKK 221
>gi|358343248|ref|XP_003635717.1| Replication protein A DNA-binding subunit [Medicago truncatula]
gi|355501652|gb|AES82855.1| Replication protein A DNA-binding subunit [Medicago truncatula]
Length = 136
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 457 IKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNRFHDMIEKDKVYYI 515
+K V + I + N+R G +I LLDE G +++AT+ N D ++K+K YYI
Sbjct: 48 LKVLVIQRDLIIPYKNSRNEGTFLTIILLDEEGTKVQATLLNKHKKTCKDALKKNKSYYI 107
Query: 516 SNCTLKPANKKFSSINNDYEMSFTHSTTV 544
S L N +SS++ + E+SFT +T +
Sbjct: 108 SKGLLDHVNPNYSSVHKEVELSFTDNTII 136
>gi|391328094|ref|XP_003738527.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 319
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 83/190 (43%), Gaps = 4/190 (2%)
Query: 457 IKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYIS 516
I+ RV +KT ++ W+ +GK+F+ L + SGE+ + + + D I Y ++
Sbjct: 78 IQGRVKSKTLVKSWSKGNANGKIFNFVLRNTSGEMNIIVSGNAADDIFDKIAVGNCYKVN 137
Query: 517 NCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN 576
+K A +++ +D E+ T + +I ++ +P ++ L I +
Sbjct: 138 AFKVKSAYQQYRVTGHDCELQLTKLSRIIEITGED---LPKIQASITTLAEIIFKPVNAT 194
Query: 577 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVI 636
+D+L V D + + T K+ + +VD + V + LW + D +
Sbjct: 195 VDILAVIFDVRPPQTFNCRDGTNTE-KQTVLVVDDTMKMVEIGLWSEFVGKLDNKEGEAV 253
Query: 637 AVKAARVSEF 646
++ +V +F
Sbjct: 254 VLQNLQVRDF 263
>gi|297849862|ref|XP_002892812.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297338654|gb|EFH69071.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 586
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 100/211 (47%), Gaps = 18/211 (8%)
Query: 448 LSPYQNKWTIKARVTNKTPIREWNN-ARGSGKLFSIDLLDESG-EIRATMFNDECNRFHD 505
+ P ++ IK ++ ++ W + +G + L+DE G + AT+ + N+F
Sbjct: 15 IDPAAQRYKIKVQI-----VKLWRGFQKETGSAIEMVLIDEKGTRMHATVEDKLMNKFKS 69
Query: 506 MIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPL 565
+++D+ + L ++ + + +++SF +T+V C D+ N KY L
Sbjct: 70 DLKEDQSILVDTFQLVNNGFEYKTSPHSFKISFFRTTSVTIC--DDFPNDVPEKYFVDFL 127
Query: 566 KTIAEISPDEN-IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE 624
K +A + + +DV+G ++ L + + T K D+ L D + A + T WGK
Sbjct: 128 KILAGVLDSKTLVDVIGHIVNIGPLEDIMIRGRSTT--KLDVELRDTNDARLLCTFWGKY 185
Query: 625 AE---TFDASNKP---VIAVKAARVSEFQGN 649
A+ T+ A + V V+ A++ EF+GN
Sbjct: 186 ADQVSTYAAEHSADMIVCVVRFAQIKEFRGN 216
>gi|321469756|gb|EFX80735.1| hypothetical protein DAPPUDRAFT_243363 [Daphnia pulex]
Length = 409
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 13/116 (11%)
Query: 432 PRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARG-SGKLFSIDLLDESGE 490
PR +A + PI L N TI+ARV ++ + W G + K F++ L D++G
Sbjct: 301 PRYVTAADIT--PISGLEEGVNSGTIRARVVSQPIVDLWKKNTGFNMKFFTVQLRDDTGT 358
Query: 491 IRATMFNDECNRFHDMIEKDKVYYISNCTLK--PANKKFSSINNDYEMSFTHSTTV 544
I+A F + RFH++ + D+ Y I TLK P +K E+S +TTV
Sbjct: 359 IKAKAFAENFQRFHELFQVDREYAIKKATLKIDPYGRK--------ELSLVKATTV 406
>gi|297596244|ref|NP_001042233.2| Os01g0184300 [Oryza sativa Japonica Group]
gi|255672951|dbj|BAF04147.2| Os01g0184300 [Oryza sativa Japonica Group]
Length = 168
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 11/154 (7%)
Query: 457 IKARVTNKTPIREWNNARGSGKLFSIDL--LDESG-EIRATMFNDECNRFHDMIEKDKVY 513
IKARV+ + N+ R K+ DL LDE+G I A M+ ++++ KVY
Sbjct: 18 IKARVSRLWDFHDLNDDR---KIVHTDLVLLDETGNSIHAQMYQHVIVNLKPLLQEGKVY 74
Query: 514 YISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISP 573
YI + T++ AN+ + + + + FT TT+ C D + P++ + P + +
Sbjct: 75 YIDSFTVRYANRTYRPVAHSLMILFTKWTTLEEC-VDVPADFPAITFSLTPFGDVPSLV- 132
Query: 574 DENI---DVLGVCIDAAELSSVTGKTNQKTYMKR 604
D+NI D++GV + S+V ++ +KR
Sbjct: 133 DKNIFYVDIMGVIAEIGTTSTVRPQSRNTDSLKR 166
>gi|115437564|ref|NP_001043325.1| Os01g0556600 [Oryza sativa Japonica Group]
gi|113532856|dbj|BAF05239.1| Os01g0556600 [Oryza sativa Japonica Group]
Length = 1932
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 93/210 (44%), Gaps = 16/210 (7%)
Query: 456 TIKARVTNKTPIREWNNARGSGKLFSIDLL---DESGEIRATMFNDECNRFHDMIEKDKV 512
T+ RV+ + E+++ G L I L+ ++ I A ++ +F +I + KV
Sbjct: 1186 TLLVRVSR---LWEYHDQDDEGDLRHIGLVLVGEKGYAIAAMIYPPWGKKFKPLISEGKV 1242
Query: 513 YYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI- 571
Y ++ +KP K + ++N ++FT T + + + G Y P + +
Sbjct: 1243 YLLTYYRVKPCTKHYRPVDNKMMINFTRWTGIEEYVDVQAG-FGHYAYTLTPYQELRSRV 1301
Query: 572 -SPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA 630
D DV+GV D + +++V + +KR++ + + + + LWG+ A +F A
Sbjct: 1302 DRKDSFTDVIGVITDISSVTTVRTRVRDSDSLKRNVYMRNAENETTNIVLWGERATSFPA 1361
Query: 631 S-------NKPVIAVKAARVSEFQGNLLLM 653
KP I + + G+++L+
Sbjct: 1362 DEILSAGKEKPQIVIFVGTLVRGHGSVVLI 1391
Score = 39.7 bits (91), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 59/301 (19%), Positives = 114/301 (37%), Gaps = 28/301 (9%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI--SPDENIDV 62
P K + ++N ++FT T + + + G Y P + + D DV
Sbjct: 1252 PCTKHYRPVDNKMMINFTRWTGIEEYVDVQAG-FGHYAYTLTPYQELRSRVDRKDSFTDV 1310
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS-------N 115
+GV D + +++V + +KR++ + + + + LWG+ A +F A
Sbjct: 1311 IGVITDISSVTTVRTRVRDSDSLKRNVYMRNAENETTNIVLWGERATSFPADEILSAGKE 1370
Query: 116 KPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDI---PECHKLQGWFST--QTNTRFEPV 170
KP I + + G L ++ +V+ N + C ++G + + P+
Sbjct: 1371 KPQIVIFVGTLVRGHGSVVL-IAWDTVVIGNVSLSGNSACKCVEGNYEAIKWIDLPAAPI 1429
Query: 171 SQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCN 230
Q A EI+D K ++ I ++ + Y AC D
Sbjct: 1430 LQNNCEQKTIA--------EIRDPHPFKFKKHEFSVTVVIKKLNMEYSWWYTAC---DIC 1478
Query: 231 KKVIDQNNGMYRCEKCN-KEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
KK +YRC + + R L V+ GD T +F + A+ ++G + +
Sbjct: 1479 KKTAKPYGNLYRCGNSTCPPTGSASPRFKLSVIAGDDTGDTTFIIFGHLAQRLIGRSVEA 1538
Query: 290 V 290
+
Sbjct: 1539 L 1539
>gi|413923361|gb|AFW63293.1| hypothetical protein ZEAMMB73_359781 [Zea mays]
Length = 391
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 14/193 (7%)
Query: 469 EWNNARGSGKLFSIDL--LDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANK 525
E+ + + +L DL LDE G I A ++ C +F ++++ VY + ++ AN+
Sbjct: 27 EFLDPQDDSRLLHTDLVLLDEEGNSIHAQIYPPLCQQFSALLDEGGVYNLKYFLVRKANR 86
Query: 526 KFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI-----DVL 580
+ + N +SFT TTV E + P+ C L I ++ P + DVL
Sbjct: 87 FYKPVENCSMISFTKWTTV----EVVLQIPPAFPVCTYNLTPIEQLQPRMDYKEYFTDVL 142
Query: 581 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA--SVTMTLWGKEAETFDASNKPVIAV 638
GV + +SS+ + Q MKR +T+ + A +V + LWG+ A +F A +
Sbjct: 143 GVVSVISHVSSLRTRGRQAEVMKRTVTISNARDAGPTVDVVLWGERATSFPAEQVHRDSD 202
Query: 639 KAARVSEFQGNLL 651
+ ++ F G L+
Sbjct: 203 SSPQIIIFVGTLV 215
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 110/262 (41%), Gaps = 32/262 (12%)
Query: 1 MLAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI 60
L AN+ + + N +SFT TTV E + P+ C L I ++ P +
Sbjct: 79 FLVRKANRFYKPVENCSMISFTKWTTV----EVVLQIPPAFPVCTYNLTPIEQLQPRMDY 134
Query: 61 -----DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA--SVTMTLWGKEAETFDA 113
DVLGV + +SS+ + Q MKR +T+ + A +V + LWG+ A +F A
Sbjct: 135 KEYFTDVLGVVSVISHVSSLRTRGRQAEVMKRTVTISNARDAGPTVDVVLWGERATSFPA 194
Query: 114 --------SNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT 165
S+ +I V + +LS S +N +PE + L+ ST+ N
Sbjct: 195 EQVHRDSDSSPQIIIFVGTLVRSYADNVSLSGGSSCKWFINAPVPEVNALRA--STEANH 252
Query: 166 RFEPVSQRTGGMGGG----AAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTY 221
R PV G +G A +++I+ K ++ + ++++ S+ Y
Sbjct: 253 R--PVIWDQGKVGAERTIVAVPEHKKLKDIKYLHPFENKKKEWLVIVKVLKI--DSSWWY 308
Query: 222 KACPSQDCNKKVIDQNNGMYRC 243
AC + C + + YRC
Sbjct: 309 NAC--KKC-LRTTKPHGDTYRC 327
>gi|391336060|ref|XP_003742401.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Metaseiulus occidentalis]
Length = 271
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 60 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVI 119
IDV G+ ++ ++ K++ K + KR+ +VD S V++TLW D ++ PV+
Sbjct: 181 IDVCGILKGVGDIQTINRKSDGKPFTKREAFIVDTSNKVVSLTLWNDAISKIDRTDHPVV 240
Query: 120 AVKAARVSEFQGGKTLSLSMSS 141
+ AR+S F GG +++ S S
Sbjct: 241 LISKARISTFNGGLSIATSTGS 262
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 577 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVI 636
IDV G+ ++ ++ K++ K + KR+ +VD S V++TLW D ++ PV+
Sbjct: 181 IDVCGILKGVGDIQTINRKSDGKPFTKREAFIVDTSNKVVSLTLWNDAISKIDRTDHPVV 240
Query: 637 AVKAARVSEFQGNL 650
+ AR+S F G L
Sbjct: 241 LISKARISTFNGGL 254
Score = 42.7 bits (99), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 25/152 (16%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
DGV ++ M+++Q I D L ++++K + S +R ++I++E ++
Sbjct: 47 DGVEQFNYGMISSQAIPPIQD-KLKPNCLIKVKTF-----SLTITKDRPIIILMECEVVA 100
Query: 387 PGTEIGFKIGNP---QPLNTNTDNSSTQQTPAATN---TNGSNGVHNNVAIPRQASAPVV 440
++G ++ P Q + + S Q TPA + GS N+
Sbjct: 101 LAEDVGDELLKPTESQKRENSNSSQSNQSTPAKVPRVLSQGSPSSRMNIT---------- 150
Query: 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNN 472
PI++L+P+Q++ TI+ RVT+K I+ W
Sbjct: 151 ---PIIALNPFQSRCTIRGRVTSKGDIKTWEK 179
>gi|358347814|ref|XP_003637946.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
gi|358347930|ref|XP_003638003.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
gi|355503881|gb|AES85084.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
gi|355503938|gb|AES85141.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
Length = 566
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 97/220 (44%), Gaps = 15/220 (6%)
Query: 437 APVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMF 496
AP++ P+ ++ + ++ RV + + E+NN + + L D+ G+I+A+
Sbjct: 2 APLIT--PVAAIVAGKINIKLRVRVVHVWTVSEFNNPNEDNSIHMLLLDDKLGKIQASAK 59
Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
R +E+ Y I N + + K+ + ++++ +T + +P
Sbjct: 60 KHLVPRIRSNVEEGSTYDIENVLVTKNDPKYQVTQHRFKLNLIDNTKFFKI---DAATIP 116
Query: 557 SVKYCFVPLKTIAEISPDEN-IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQAS 615
+ F+P I E +E +DV+G ++ EL + M D+TL D
Sbjct: 117 LNHFDFMPFNEILEAEREEKVVDVIGQVVERDELKERDVNGRRSKIM--DLTLQDSESRR 174
Query: 616 VTMTLWGKEAE---TFDASNKP----VIAVKAARVSEFQG 648
V TLW AE +F A++ P ++ ++ ++ ++QG
Sbjct: 175 VHCTLWANYAERMNSFLAAHDPSSPVIVLIQQCKLKKYQG 214
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 115/280 (41%), Gaps = 20/280 (7%)
Query: 34 EVGNMPSVKYCFVPLKTIAEISPDENI-DVLGVCIDAAELSSVTGKTNQKTYMKRDITLV 92
+ +P + F+P I E +E + DV+G ++ EL + M D+TL
Sbjct: 111 DAATIPLNHFDFMPFNEILEAEREEKVVDVIGQVVERDELKERDVNGRRSKIM--DLTLQ 168
Query: 93 DQSQASVTMTLWGKEAE---TFDASNKP----VIAVKAARVSEFQGGKTLSLS-MSSVLS 144
D V TLW AE +F A++ P ++ ++ ++ ++QG +S + + L
Sbjct: 169 DSESRRVHCTLWANYAERMNSFLAAHDPSSPVIVLIQQCKLKKYQGIMGVSNAFFGTKLL 228
Query: 145 LNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQL-GMGDKAD 203
L D+PE + + + +SQ T ++L + + + L ++
Sbjct: 229 LEGDLPEAIEFKSKIDGGDVQVSQSISQNTTSTVVSLVDDMLQTKRMTIEDLIEATEQCQ 288
Query: 204 YCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMI 263
+ I + + Y+AC C +V +Y C KCN N R L V +
Sbjct: 289 GIVLATICGIESEYSWYYQACTK--CAGRVRTVAGRLY-CGKCNTGRNAVP-RFKLHVQV 344
Query: 264 GDWTNSVWVTLFQNEAESILGVTAQEVGES----TEDHPA 299
D T S LF S + T Q++ ++ + D+P+
Sbjct: 345 MDNTGSTSFILFDRNVSSYVNRTVQDMIDAQPNNSSDYPS 384
>gi|302823631|ref|XP_002993466.1| hypothetical protein SELMODRAFT_431543 [Selaginella moellendorffii]
gi|300138703|gb|EFJ05461.1| hypothetical protein SELMODRAFT_431543 [Selaginella moellendorffii]
Length = 148
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 12/142 (8%)
Query: 618 MTLWGKEAETFDA--------SNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADY 669
M LW EAE + +P++ VK +++S++ GN E+ L + + +
Sbjct: 1 MCLWDSEAEDEGSEIKEKPGQGERPIVCVKGSQISDYNGNDFWYNEMLSINLKVSEFSAI 60
Query: 670 CSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILP 725
V ++ F+ + Y AC + C KKV + M++C C+ +F ++ L
Sbjct: 61 FHVIVSVKEFQTGDFYYPACMKVVNGRQCGKKVTQVSESMWQCNSCDTDFGDIHFKYALH 120
Query: 726 VMIGDWTNSVWVTLFQNEAESI 747
+ I D T +W F + E +
Sbjct: 121 LCILDSTGHIWAVAFDDANEIV 142
Score = 39.3 bits (90), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 211 IQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDW 266
++ F+ + Y AC + C KKV + M++C C+ +F ++ L + I D
Sbjct: 67 VKEFQTGDFYYPACMKVVNGRQCGKKVTQVSESMWQCNSCDTDFGDIHFKYALHLCILDS 126
Query: 267 TNSVWVTLFQNEAESI 282
T +W F + E +
Sbjct: 127 TGHIWAVAFDDANEIV 142
>gi|108862781|gb|ABA99343.2| hypothetical protein LOC_Os12g35400 [Oryza sativa Japonica Group]
Length = 735
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 94/205 (45%), Gaps = 13/205 (6%)
Query: 468 REWN--NARGSGKLFSIDLL--DESG-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKP 522
R W+ +A+ F DLL D G I A +F ++ ++ + KVYY+ + T+K
Sbjct: 316 RLWDFCDAKDESNFFHKDLLLLDAKGNSIHAHIFPPLTEKYKPLLTEGKVYYLHSYTVKY 375
Query: 523 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI--SPDENIDVL 580
N+ + + N+ + FT T + C G P++ Y + + + D +DV+
Sbjct: 376 GNRLYRPVPNEMMILFTTWTEIEECIGGPAG-FPTIVYSLTSYNDVPNLVGNVDRFVDVV 434
Query: 581 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKA 640
GV + + + K+ + +K+D + ++ + + + LWG+ A F A + K
Sbjct: 435 GVITEITTPTMLRPKSRKADSLKKDSSNIN---SILNVALWGERALAFQAEDIYNAGKKE 491
Query: 641 ARVSEFQGNLL--LMREIQDQQLGM 663
++ F G L+ + D ++GM
Sbjct: 492 PQIVLFVGTLVKDYTKSGIDSKIGM 516
>gi|357511469|ref|XP_003626023.1| Replication factor A protein [Medicago truncatula]
gi|355501038|gb|AES82241.1| Replication factor A protein [Medicago truncatula]
Length = 526
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 126/309 (40%), Gaps = 31/309 (10%)
Query: 1 MLAAPANKKFSSINNDYEMSFTHST--TVIPCNEDEVGNMPSVKYCFVPLKTIAE-ISPD 57
+L A ++ + ++++ T T I CN +P + FVP K I E D
Sbjct: 81 VLVAHNEIRYRCTGHRWKLNLIDQTKFTKIDCN-----TIPEYHFEFVPFKEILESTKED 135
Query: 58 ENIDVLGVCI--DAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA-- 113
++DV+G + D+ + V GK + M DITL D + +LW A DA
Sbjct: 136 RHVDVIGRVVERDSLKEKEVLGKKS----MVLDITLEDTEGNRIHCSLWDTYAIRMDAYL 191
Query: 114 ----SNKPVIAV-KAARVSEFQGGKTLSLSM-SSVLSLNPDIPECHKLQGWFSTQTNTRF 167
N PVI V ++ ++ +S + + L L+ D P +
Sbjct: 192 TVHDPNSPVIVVIHLCKLKKYYATMGISNAFYGTKLILDDDHPVVKEFLSKIDGADVEVT 251
Query: 168 EPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSV---RGIIQVFRGSNTTYKAC 224
+ VSQ TG + A ++L R + + L + +D C V II + + Y AC
Sbjct: 252 QGVSQITGSLIVPLAEDMLQSRMMTIEDL--IESSDQCVVIVLASIIGIEAEYSWYYDAC 309
Query: 225 PSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILG 284
K+I G C +CN+ N R L V + D T S LF + +G
Sbjct: 310 TKCAGRIKII---AGRMFCPRCNQSRNAVP-RFKLHVQVMDNTGSTSFILFDRNVSNYVG 365
Query: 285 VTAQEVGES 293
+ Q++ +S
Sbjct: 366 KSVQDLIDS 374
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 91/214 (42%), Gaps = 24/214 (11%)
Query: 437 APVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDES-GEIRATM 495
AP++ P+ S+ + ++ RV N + +++ + L+DE G+I+AT
Sbjct: 2 APIIT--PVSSIVAGKINIKLRVRVINLWTVPDFSRPT-EDNFIHLLLMDEKLGKIQATA 58
Query: 496 FNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHST--TVIPCNEDEVG 553
+ +++ Y I N + ++ + ++++ T T I CN
Sbjct: 59 KKTLIPKIRSLVQDGAAYEIQNVLVAHNEIRYRCTGHRWKLNLIDQTKFTKIDCN----- 113
Query: 554 NMPSVKYCFVPLKTIAE-ISPDENIDVLGVCI--DAAELSSVTGKTNQKTYMKRDITLVD 610
+P + FVP K I E D ++DV+G + D+ + V GK + M DITL D
Sbjct: 114 TIPEYHFEFVPFKEILESTKEDRHVDVIGRVVERDSLKEKEVLGKKS----MVLDITLED 169
Query: 611 QSQASVTMTLWGKEAETFDA------SNKPVIAV 638
+ +LW A DA N PVI V
Sbjct: 170 TEGNRIHCSLWDTYAIRMDAYLTVHDPNSPVIVV 203
>gi|115436702|ref|NP_001043109.1| Os01g0390300 [Oryza sativa Japonica Group]
gi|55297220|dbj|BAD68984.1| DNA binding protein-like [Oryza sativa Japonica Group]
gi|113532640|dbj|BAF05023.1| Os01g0390300 [Oryza sativa Japonica Group]
gi|215736912|dbj|BAG95841.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767124|dbj|BAG99352.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 185
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 15/164 (9%)
Query: 457 IKARVTNKTPIREWN--NARGSGKLFSIDL--LDESG-EIRATMFNDECNRFHDMIEKDK 511
IKARV+ R+W+ + K++ DL LDE G I ++ + ++++ K
Sbjct: 18 IKARVS-----RQWDYHDLNDETKIYHTDLVLLDEKGNSIHVQIYPPAMIKLRTLLQEGK 72
Query: 512 VYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI 571
VYY + +++ AN+ + + N +SFT TT+ C D + P++ + P + +
Sbjct: 73 VYYFDSFSVRYANRTYRPVTNPLMISFTKWTTLEEC-IDAFDDFPAITFSLTPFQDAPSL 131
Query: 572 SPDEN---IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS 612
D N +D++GV + ++ K+ +KR + + D S
Sbjct: 132 V-DRNAFYVDIMGVITEIGATDTLRPKSRNTETLKRTMQIWDAS 174
>gi|402223681|gb|EJU03745.1| hypothetical protein DACRYDRAFT_105902 [Dacryopinax sp. DJM-731
SS1]
Length = 432
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 23/246 (9%)
Query: 85 MKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLS 144
++R++ LVD S + + LW A + + ++ +K ++ G +SL+M
Sbjct: 131 VRREVQLVDDSAHIMCVALWKDCATSMAMKHGSILLLKKVVIAAHDG---ISLNMYKKTK 187
Query: 145 LNPD--IPECHKLQGWFSTQTNT--RFEPVSQRTGGMGGGA------AGNLLLMREIQDQ 194
++ D + E L+ W++ + F+ +S + G G N+L + E+Q
Sbjct: 188 VDKDLKVAEGTSLKNWYNNLASNPQTFQHISS-SYSTGSGLFTDIEPCLNVLTIPEVQKS 246
Query: 195 QLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFT 254
LG +V G IQV G N Y+AC + CNK + + E + + F
Sbjct: 247 NLGTSSCIHTFNVEGCIQVVDG-NAVYEACTNTHCNKGIEKSPCDIEGHEDMSDDNRRFC 305
Query: 255 YRLILPVMIG-DWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----LKKALFTQY 308
Y L L IG D +S+ V++F A+ +L A EV + + P L L T++
Sbjct: 306 YHLKLT--IGQDHRHSIDVSVFMLLADKMLEEDAMEVVKKRDHMPGQSDEVLGALLKTKW 363
Query: 309 IFRLRA 314
F ++A
Sbjct: 364 RFTIQA 369
Score = 43.9 bits (102), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 9/137 (6%)
Query: 649 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 708
N+L + E+Q LG +V G IQV G N Y+AC + CNK + +
Sbjct: 236 NVLTIPEVQKSNLGTSSCIHTFNVEGCIQVVDG-NAVYEACTNTHCNKGIEKSPCDIEGH 294
Query: 709 EKCNKEFNTFTYRLILPVMIG-DWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA--- 764
E + + F Y L L IG D +S+ V++F A+ +L A EV + + P
Sbjct: 295 EDMSDDNRRFCYHLKLT--IGQDHRHSIDVSVFMLLADKMLEEDAMEVVKKRDHMPGQSD 352
Query: 765 --LKKALFTQYIFRLRA 779
L L T++ F ++A
Sbjct: 353 EVLGALLKTKWRFTIQA 369
>gi|115477364|ref|NP_001062278.1| Os08g0522100 [Oryza sativa Japonica Group]
gi|113624247|dbj|BAF24192.1| Os08g0522100 [Oryza sativa Japonica Group]
Length = 1578
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 132/323 (40%), Gaps = 27/323 (8%)
Query: 7 NKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEIS--PDENIDVLG 64
NKK+ + Y + F ST V E ++P+ + F P I S ID++G
Sbjct: 907 NKKYIYHHQKYMLQFKSSTKVHHL-ESRGSSIPNYGFEFCPFDQIPSKSGISKPLIDLIG 965
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS--------NK 116
V I GKT+ K K I D+ + + LWG+ +FD + +K
Sbjct: 966 V-ISHVGPYDYAGKTSSKKNRKLKIRSKDEQEQEIV--LWGEYGGSFDEAFVLQKSTDHK 1022
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSV-LSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTG 175
V+A+ A + GKT + S S+ + + DI E + Q + T + + +
Sbjct: 1023 IVVAILAGLTAGTYLGKTEATSSSATQIYFDSDITEIAEYQSSYQWDIPTLQQQMPRVEH 1082
Query: 176 GMGGGAAGNLLLMREIQDQQLGMGDKAD-YCSVRGIIQVFRGSNTTYKACPSQDCNKKVI 234
AAG L + EI + + + Y + + + +N YK C S C
Sbjct: 1083 LTPLQAAGKLYKLEEISRLPISAFEGGNSYSCIAKVSAIVPYTNWYYKICKS--CTASY- 1139
Query: 235 DQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE-- 292
+ N+ RC+ C Y+L P+ I D + ++ F N AE ++ V A + +
Sbjct: 1140 NSNSDTPRCQ-CQHSMPKPMYKL--PLTIKDESGTLDAVAFYNVAEDLVEVNATQATQNL 1196
Query: 293 ---STEDHPALKKALFTQYIFRL 312
+TE AL A+ +F +
Sbjct: 1197 KIDATEHAIALDIAIGKTRLFHI 1219
>gi|290990877|ref|XP_002678062.1| single stranded DNA binding, replication factor-a protein
[Naegleria gruberi]
gi|284091673|gb|EFC45318.1| single stranded DNA binding, replication factor-a protein
[Naegleria gruberi]
Length = 1043
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDE-SGE---------IRA 493
P L P + W IK +V K + W N RGSG++ +I + DE SG+ ++
Sbjct: 542 PFSQLDPVLDDWCIKVKVIKKHNEKSWANERGSGRVAAITIADELSGDMSLSSKQNKVKL 601
Query: 494 TMFNDECNRFHDMIEKDKVYYISNCTL 520
MFND N F+D +E+ + YY++ L
Sbjct: 602 IMFNDCINEFYDQMEEGESYYVNKGHL 628
>gi|413937452|gb|AFW72003.1| hypothetical protein ZEAMMB73_057715 [Zea mays]
Length = 218
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 14/161 (8%)
Query: 3 AAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN--I 60
AP+ + ++N + FT T +D N P Y + I + ++ I
Sbjct: 34 VAPSRNYYRPVDNSMMIQFTLYTQA-KVVKDPPPNFPRYAYKLTSFEDIGDNVDNKTYLI 92
Query: 61 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA------- 113
+VLG+ + L V G N + RDI L D + S +TLWG +A +F
Sbjct: 93 NVLGILTEIGSLHHV-GYNNSN--IIRDIFLKDINNTSTKVTLWGHQASSFSVDNICDEN 149
Query: 114 SNKPVIAVKAARVSE-FQGGKTLSLSMSSVLSLNPDIPECH 153
NKPV+ + +++ F+G LS + + NPDIPE
Sbjct: 150 DNKPVVILFVGCLAKRFKGEAYLSATAACTWYFNPDIPEAQ 190
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 18/174 (10%)
Query: 489 GEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
EI+A + D+ +I+ DKVY + + P+ + ++N + FT T
Sbjct: 7 AEIQAALVADK----DSLIQIDKVYELKRFRVAPSRNYYRPVDNSMMIQFTLYTQA-KVV 61
Query: 549 EDEVGNMPSVKYCFVPLKTIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQKTYMKRDI 606
+D N P Y + I + ++ I+VLG+ + L V G N + RDI
Sbjct: 62 KDPPPNFPRYAYKLTSFEDIGDNVDNKTYLINVLGILTEIGSLHHV-GYNNSN--IIRDI 118
Query: 607 TLVDQSQASVTMTLWGKEAETFDA-------SNKPVIAVKAARVSE-FQGNLLL 652
L D + S +TLWG +A +F NKPV+ + +++ F+G L
Sbjct: 119 FLKDINNTSTKVTLWGHQASSFSVDNICDENDNKPVVILFVGCLAKRFKGEAYL 172
>gi|357517787|ref|XP_003629182.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
gi|355523204|gb|AET03658.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
Length = 604
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 94/211 (44%), Gaps = 18/211 (8%)
Query: 437 APVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMF 496
AP++ P+ ++ + ++ RV + I E+N + + + L ++ G+I+ T+
Sbjct: 2 APIIT--PVSAIVAGRINIRLRVRVVHVWTIPEFNRPQEDSAMHLLLLDEKFGKIQLTVK 59
Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
++E+ Y + N + + K+ + N+ + + F H T N+ E N+P
Sbjct: 60 KHLIPMIKSVVEEGAAYMLDNVLVTRNDPKYGTTNHKWRLDFLHKTKF---NKIEALNIP 116
Query: 557 SVKYCFVPLKTIAEISPDEN-IDVLGVCI--DAAELSSVTGKTNQKTYMKRDITLVDQSQ 613
+ FV I + +E IDV+G + D + V G+T++ D+TL D
Sbjct: 117 QNHFDFVSFAEILDSDREERIIDVIGHVVERDVMKDKEVNGRTSKLL----DLTLQDSES 172
Query: 614 ASVTMTLWGKEAETFDA------SNKPVIAV 638
+ +LW AE + +N PVI +
Sbjct: 173 RRIHCSLWATYAERMTSFFATHEANSPVIVI 203
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 72/332 (21%), Positives = 137/332 (41%), Gaps = 32/332 (9%)
Query: 1 MLAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI 60
+L + K+ + N+ + + F H T N+ E N+P + FV I + +E I
Sbjct: 81 VLVTRNDPKYGTTNHKWRLDFLHKTKF---NKIEALNIPQNHFDFVSFAEILDSDREERI 137
Query: 61 -DVLGVCI--DAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA---- 113
DV+G + D + V G+T++ D+TL D + +LW AE +
Sbjct: 138 IDVIGHVVERDVMKDKEVNGRTSKLL----DLTLQDSESRRIHCSLWATYAERMTSFFAT 193
Query: 114 --SNKPVIAV-KAARVSEFQGGKTLSLSMSSV-LSLNPDIPECHKLQGWFSTQTNTRFEP 169
+N PVI + + ++ + +S + + L ++ DI E + + + + +
Sbjct: 194 HEANSPVIVIMQQCKLKSYCSTMGVSNAFYGIKLIVDGDIAEVSEYKSKINGEEVQVTQG 253
Query: 170 VSQRTGGMGGGAAGNLLL-MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD 228
+SQ + ++L R + L +K + + + + + N Y+AC
Sbjct: 254 ISQSSASSIVPLVDDMLQSHRMTIEDLLDASEKCNGIVLATVCDIEKEFNWYYQACTKCA 313
Query: 229 CNKKVIDQNNGMYRCEKCNKEFNTF-TYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA 287
K I G C KCN N +++ L VM D T S LF + +G +
Sbjct: 314 GRVKTI---AGRLFCPKCNTGRNAVPRFKVHLQVM--DNTGSTSFILFDRNVSNYVGKSV 368
Query: 288 QEV------GESTEDHPALKKALF-TQYIFRL 312
Q++ ++ +D PA + Q +F++
Sbjct: 369 QDLIQQQAQQKNADDFPAEFDTFYGKQMLFKV 400
>gi|357503597|ref|XP_003622087.1| Replication factor A 51 kDa subunit [Medicago truncatula]
gi|355497102|gb|AES78305.1| Replication factor A 51 kDa subunit [Medicago truncatula]
Length = 466
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 137/327 (41%), Gaps = 36/327 (11%)
Query: 8 KKFSSINNDYEMSFTHSTTVIPCNEDEV-GNMPSVKYCFVPLKTIAEISPDENI--DVLG 64
+KF N+ Y+++ ST + + D++ N+ + F + I D+ + DV+G
Sbjct: 45 EKFKPTNHKYKLTLIGSTIITKTSYDKISANL----FNFTKFQHIIG-GTDKGVLMDVIG 99
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA------SNKPV 118
+ ++ V K + D+TL D ++ TLWG AE ++ + P+
Sbjct: 100 HVVGTTDIKDVQVKGKMTKIL--DLTLEDLESNTIICTLWGHFAEQMNSYMSTNGNTFPI 157
Query: 119 IAV-KAARVSEFQGGKTLSLSMS---SVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRT 174
+ V R++ + G ++ + + L +NP+I EC + T + + V+Q T
Sbjct: 158 VVVMHLCRLNVYVFGGMYGIANAFNETKLLINPNIEECCNYKKGMKTGNASLTQGVTQMT 217
Query: 175 G------GMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQD 228
N+ ++ Q +Q+G Y + II + Y +C
Sbjct: 218 AQSSLSLSNDLLQTKNMTILDITQAKQVGA-----YVVLAKIIGIDTNKKWCYVSC--NK 270
Query: 229 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 288
C KKV + Y CEKC+ + T R ++ + + D + S + LF G T +
Sbjct: 271 CFKKV-EPVCTKYFCEKCDTLVDA-TKRFMVHIHVMDDSGSTTIVLFDGVISQHFGKTTK 328
Query: 289 E-VGESTEDHPALKKALFTQYIFRLRA 314
E +G +T D+P L + +F A
Sbjct: 329 EQMGRTTNDYPTEFDTLRDKKMFYTYA 355
>gi|145475015|ref|XP_001423530.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124390591|emb|CAK56132.1| unnamed protein product [Paramecium tetraurelia]
Length = 635
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 116/264 (43%), Gaps = 20/264 (7%)
Query: 87 RDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLN 146
+ + DQ+ +++ LWG + + ++ K + K+L+ +++ N
Sbjct: 364 KSFIVFDQT-TRLSVKLWGAQYANINLQKGEIMVFKGLKFYN-TNFKSLNSDHQTMIIQN 421
Query: 147 PDIPECHKLQGWFSTQT-NTRFEP-VSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADY 204
D+ E +L+ W + + +T +P T + + L+ E G + Y
Sbjct: 422 HDLNEVKQLKSWLAGKNIDTIMKPNPDNSTIDLQQLDEFVIKLLNE------GKTQQTSY 475
Query: 205 CSVRGIIQVFRGSNTTYKACPSQDCNKKVID-QNNGMYRCEKCNKEFNTFTYRLILPVMI 263
+ G I + + Y CPS C K+ + + YRC+KC E + + +L V I
Sbjct: 476 KYIFGYIIELQENRNMYPCCPSLRCKSKMEEIPSRKTYRCKKCLTENPSPKFSFVLRVTI 535
Query: 264 GDWTNSVWVTLFQNEAESILGVTAQEV-GESTEDHP--ALKKALFTQYIFRLRAKLEHYN 320
D ++ +F + A +LG+TA ++ S ED L K F Q +++ + + YN
Sbjct: 536 MDEFTNIKAVIFDDIAVKLLGITADQLRAMSHEDQRNIFLSKE-FQQKKMKVQIQFQDYN 594
Query: 321 GTKK----IPDGVNINSFAMLATQ 340
G + + D V+I+ + LATQ
Sbjct: 595 GQIQPKYNVQDIVDID-YKELATQ 617
Score = 46.6 bits (109), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 74/395 (18%), Positives = 150/395 (37%), Gaps = 73/395 (18%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGS--GKLFSIDLLDESGEIRATMFNDEC-N 501
I + P KW ++ R+ K+ ++ + + F I +LD EI +F ++ +
Sbjct: 219 ISVMYPNMKKWVLEGRIILKSEQLDFRCKKTDMISRYFKIIILDCEQEIIVGLFYEKALS 278
Query: 502 RFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC 561
+F ++++ KVY N + N +++F + + + + P +
Sbjct: 279 KFFSVLQQGKVYTFKNGCIGQ-----DKANGTKKITFNEYSIISESQNFAIPSAPQLN-- 331
Query: 562 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
F L+ I + + +DV+ V + + S + + DQ+ +++ LW
Sbjct: 332 FSTLQEIETLQHNSIVDVVAVIQEIKQDSDSC----------KSFIVFDQT-TRLSVKLW 380
Query: 622 GKEAETFDASNKPVIAVKAARV---------SEFQGNLLLMREIQD-------------- 658
G + + ++ K + S+ Q ++ ++ +
Sbjct: 381 GAQYANINLQKGEIMVFKGLKFYNTNFKSLNSDHQTMIIQNHDLNEVKQLKSWLAGKNID 440
Query: 659 --------------QQL----------GMGDKADYCSVRGIIQVFRGSNTTYKACPSQDC 694
QQL G + Y + G I + + Y CPS C
Sbjct: 441 TIMKPNPDNSTIDLQQLDEFVIKLLNEGKTQQTSYKYIFGYIIELQENRNMYPCCPSLRC 500
Query: 695 NKKVID-QNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 753
K+ + + YRC+KC E + + +L V I D ++ +F + A +LG+TA
Sbjct: 501 KSKMEEIPSRKTYRCKKCLTENPSPKFSFVLRVTIMDEFTNIKAVIFDDIAVKLLGITAD 560
Query: 754 EV-GESTEDHP--ALKKALFTQYIFRLRAKLEHYN 785
++ S ED L K F Q +++ + + YN
Sbjct: 561 QLRAMSHEDQRNIFLSKE-FQQKKMKVQIQFQDYN 594
>gi|391325707|ref|XP_003737369.1| PREDICTED: probable replication factor A 73 kDa subunit-like
[Metaseiulus occidentalis]
Length = 228
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 80/185 (43%), Gaps = 4/185 (2%)
Query: 464 KTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPA 523
K+ ++ + G LFS L D + +I + + + + I+ Y I + +P+
Sbjct: 3 KSDMKTFKKDNTDGNLFSFTLADNTADINVLVTGELGHEMFEKIQTGHCYQICDFKQRPS 62
Query: 524 NKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVC 583
+ + N+ E+ + V + + G++P + + I + + ID+ +
Sbjct: 63 HPLYKVTNHTCELLLGKISEV---RQIDGGHLPKKVEKYFTINQIRDTEVGKMIDLQAII 119
Query: 584 IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARV 643
D E+ S +GK +++I LVD S+ V++TLWG D V+ + V
Sbjct: 120 YDVGEIHSYSGKAGD-IRNRQNILLVDDSRKIVSLTLWGSLIHKVDDREGQVVDFQKLSV 178
Query: 644 SEFQG 648
EF+
Sbjct: 179 KEFKA 183
Score = 48.1 bits (113), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 36 GNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS 95
G++P + + I + + ID+ + D E+ S +GK +++I LVD S
Sbjct: 89 GHLPKKVEKYFTINQIRDTEVGKMIDLQAIIYDVGEIHSYSGKAGD-IRNRQNILLVDDS 147
Query: 96 QASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLS 136
+ V++TLWG D V+ + V EF+ K LS
Sbjct: 148 RKIVSLTLWGSLIHKVDDREGQVVDFQKLSVKEFKARKNLS 188
>gi|125547080|gb|EAY92902.1| hypothetical protein OsI_14707 [Oryza sativa Indica Group]
Length = 455
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 4/171 (2%)
Query: 484 LLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHST 542
L+DE G + A + E ++F ++++ KVY S + P+ + N Y + T T
Sbjct: 20 LVDEKGNAMYAEIPGVEADKFRPLLQESKVYTFSKFLVLPSKPAYKPFPNKYMIKLTPWT 79
Query: 543 TVIPCNEDEVGNMPSVKYCFVPLKTIA-EISPDENI-DVLGVCIDAAELSSVTGKTNQKT 600
V NE + PS + V ++ + E DV+G+ I ++L+ V +
Sbjct: 80 NVEQVNEVP-ADFPSHVFNLVQFSDLSLRVGMQEYFTDVIGMIIGVSKLAYVRMASKTSD 138
Query: 601 YMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL 651
KR I L D + V + LWG+ A FDA + V F G L+
Sbjct: 139 TPKRVIALRDLANCEVKLVLWGEHALDFDADAVHSVGQDNVVVGIFVGTLM 189
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 66/163 (40%), Gaps = 9/163 (5%)
Query: 1 MLAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIA-EISPDEN 59
L P+ + N Y + T T V NE + PS + V ++ + E
Sbjct: 55 FLVLPSKPAYKPFPNKYMIKLTPWTNVEQVNEVP-ADFPSHVFNLVQFSDLSLRVGMQEY 113
Query: 60 I-DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPV 118
DV+G+ I ++L+ V + KR I L D + V + LWG+ A FDA
Sbjct: 114 FTDVIGMIIGVSKLAYVRMASKTSDTPKRVIALRDLANCEVKLVLWGEHALDFDADAVHS 173
Query: 119 IAVKAARVSEFQG------GKTLSLSMSSVLSLNPDIPECHKL 155
+ V F G KTLS + LN DIPE ++
Sbjct: 174 VGQDNVVVGIFVGTLMKAYNKTLSGGSACKWYLNEDIPEINQF 216
>gi|328725637|ref|XP_003248557.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Acyrthosiphon pisum]
Length = 248
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 89/177 (50%), Gaps = 12/177 (6%)
Query: 3 AAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI-SPDENID 61
A+K ++ N+YE+ F TT+I + D ++P+ + LKTI + S D+N
Sbjct: 16 VKEADKAYNKSKNNYEIFFNGLTTIIERSGD--TDIPNHQ----QLKTIDNLFSMDQNT- 68
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ--ASVTMTLWGKEAETFDASNKPVI 119
++G D LSS+ ++ Y+ I + VT+TLW EA F+A+ ++
Sbjct: 69 LIGNNSDIL-LSSLIYNY-KRIYLSYKIHYYIKIAFFLKVTVTLWDTEATNFNANEGDIM 126
Query: 120 AVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGG 176
++ ++ +++ K +S++ SS + +NP+ E LQ W+ F +SQ + G
Sbjct: 127 SIMEGKIIDYKNVKKISMTGSSKIEINPNWNETLDLQNWYKEFEKKEFLNLSQMSIG 183
Score = 39.7 bits (91), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 75/144 (52%), Gaps = 12/144 (8%)
Query: 508 EKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKT 567
+++ VY I N +K A+K ++ N+YE+ F TT+I + D ++P+ + LKT
Sbjct: 4 KENNVYNIKNGEVKEADKAYNKSKNNYEIFFNGLTTIIERSGD--TDIPNHQ----QLKT 57
Query: 568 IAEI-SPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ--ASVTMTLWGKE 624
I + S D+N ++G D LSS+ ++ Y+ I + VT+TLW E
Sbjct: 58 IDNLFSMDQNT-LIGNNSDIL-LSSLIYNY-KRIYLSYKIHYYIKIAFFLKVTVTLWDTE 114
Query: 625 AETFDASNKPVIAVKAARVSEFQG 648
A F+A+ ++++ ++ +++
Sbjct: 115 ATNFNANEGDIMSIMEGKIIDYKN 138
>gi|297719755|ref|NP_001172239.1| Os01g0223400 [Oryza sativa Japonica Group]
gi|56783998|dbj|BAD81453.1| unknown protein [Oryza sativa Japonica Group]
gi|56784071|dbj|BAD81308.1| unknown protein [Oryza sativa Japonica Group]
gi|255673012|dbj|BAH90969.1| Os01g0223400 [Oryza sativa Japonica Group]
Length = 249
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 10/175 (5%)
Query: 480 FSIDLLDESGEIRATMFNDECNR-FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSF 538
F + L+DE G A C+ F +I + KVYYI ++ N+++ ++N + F
Sbjct: 50 FGLVLIDEKGTSIAAQIYPPCDEIFRPIITEGKVYYIKYFRVRKCNRQYKPVDNCMSIYF 109
Query: 539 THSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI--SPDENIDVLGVCIDAAELSSVTGKT 596
T T + D +P Y P + D D++G+ + ++ + G
Sbjct: 110 TRWTK-LEERVDPPAEIPLYTYSLSPFGGLRSRVGKKDSFTDIIGIITQLSPVTPLQGT- 167
Query: 597 NQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL 651
+KR + + + A + + LWG+ A +F A V K ++ F G L+
Sbjct: 168 -----VKRSVFIRNTDNAILNVALWGERATSFPADEVFVAGQKEPQIVIFVGTLV 217
>gi|224108251|ref|XP_002333414.1| predicted protein [Populus trichocarpa]
gi|222836505|gb|EEE74912.1| predicted protein [Populus trichocarpa]
Length = 756
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 13/134 (9%)
Query: 37 NMPSVKYCFVPLKTIAEISPDENI--DVLGV--CIDAAELSSVTGKTNQKTYMKRDITLV 92
++P + F+ I S I DVLG + E V G+T + KR+ L
Sbjct: 335 HVPRYYFNFIDYAHILTKSKGSRILTDVLGRLKALQPLEQVMVCGQTLEN---KREFMLE 391
Query: 93 DQSQASVTMTLWGKEAETFDA---SNKP---VIAVKAARVSEFQGGKTLSLSMSSVLSLN 146
+ + +TLWG A FD N P +IA RV+EF+G L+ + +S+ N
Sbjct: 392 NIRGEELHITLWGDSARDFDELALHNLPSPVIIAFAGFRVTEFKGKPNLNSTTTSLWYFN 451
Query: 147 PDIPECHKLQGWFS 160
PDIPEC + +F+
Sbjct: 452 PDIPECLAYKHFFA 465
>gi|4006824|gb|AAC95166.1| putative replication protein A1 [Arabidopsis thaliana]
Length = 456
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 131/331 (39%), Gaps = 65/331 (19%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI--DV 62
P + ++ + Y++ F TTV PC D V + S+ I S + NI DV
Sbjct: 58 PTSDQYRISDLKYKIGFVFKTTVSPC--DTVSD--SLFLSLAKFDVILSGSTNSNILHDV 113
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKP----- 117
+G ID +E+ + N K K D L DQ + LWGK AE D + +
Sbjct: 114 MGQVIDRSEIQDLNA--NNKPTKKIDFHLRDQHDTRLACILWGKYAEIVDKACQESTDGI 171
Query: 118 -VIAVKAARVSEFQGGKTLS--LSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRT 174
V ++ A+++ + +++S +S V ++P + E + S T
Sbjct: 172 VVCLIRFAKINLYNDTRSVSNFFDVSQVF-VDPTLAELDLFKQ-------------SIPT 217
Query: 175 GGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNT--------------- 219
G+ G++G+ + + + G D DY + I +V S+
Sbjct: 218 DGLTLGSSGS--FHKRLYAPRTG-DDDGDY-PRQTIKEVLTSSDVGKCKTVCTVSAIDTD 273
Query: 220 ---TYKACPSQDCNKKVIDQ-----------NNGMYRCEKCNKEFNTFTYRLILPVMIGD 265
Y C + NKKV+ + + CE CN + + L + I D
Sbjct: 274 WPCYYFCCRAH--NKKVVKEEAIKLEDVKQPQKPRFWCEICNGFAKSVVAKFCLHLHIMD 331
Query: 266 WTNSVWVTLFQNEAESILGVTAQEVGESTED 296
T+ LF + A+ ILG TA ++ + + D
Sbjct: 332 QTDEARCMLFDSHAKEILGTTAPQLLDGSFD 362
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 9/159 (5%)
Query: 476 SGKLFSIDLLDESGE-IRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDY 534
+G+ + L+D++G+ + A + ++ +F + + I+ TL P + ++ + Y
Sbjct: 11 AGESIKMILVDKAGDKMYAAVRREQIKKFERCVTEGVWKIITTITLNPTSDQYRISDLKY 70
Query: 535 EMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI--DVLGVCIDAAELSSV 592
++ F TTV PC D V + S+ I S + NI DV+G ID +E+ +
Sbjct: 71 KIGFVFKTTVSPC--DTVSD--SLFLSLAKFDVILSGSTNSNILHDVMGQVIDRSEIQDL 126
Query: 593 TGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS 631
N K K D L DQ + LWGK AE D +
Sbjct: 127 NA--NNKPTKKIDFHLRDQHDTRLACILWGKYAEIVDKA 163
>gi|297724803|ref|NP_001174765.1| Os06g0329200 [Oryza sativa Japonica Group]
gi|255677008|dbj|BAH93493.1| Os06g0329200 [Oryza sativa Japonica Group]
Length = 225
Score = 55.1 bits (131), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 484 LLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHST 542
LLDE+G I ++ N+F D++++ KVYYI + +++ AN+ + + N +SFT T
Sbjct: 107 LLDETGASIHVQIYPSLRNKFKDLLQQGKVYYIDSFSVRYANRTYRPVANPLMISFTKWT 166
Query: 543 TVIPCNEDEVGNMPSVKYCFVPLKTIAEI 571
T+ C E N PS+ + P + + +
Sbjct: 167 TLEECIEIP-DNFPSITFSLTPFQDVPSL 194
>gi|357515665|ref|XP_003628121.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
gi|355522143|gb|AET02597.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
Length = 637
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/350 (21%), Positives = 139/350 (39%), Gaps = 40/350 (11%)
Query: 437 APVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMF 496
AP++ P+ ++ + ++ RV + + E+NN + + L D G+I+A+
Sbjct: 2 APLIT--PVAAIVAGKINIKLRVRVVHVWTVFEFNNPNEDNSIHMLLLDDNLGKIQASTK 59
Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMS-------FTHSTTVIPCNE 549
R +E+ Y N + + K+ + ++++ F T IP N
Sbjct: 60 KHWVPRIRSNVEEGSTYDNENVLVTKNDPKYQVTQHSFKLNLIDKTKFFKFDATTIPLNH 119
Query: 550 DEVGNMPSVKYCFVPLKTIAEISPDEN-IDVLGVCIDAAELSSVTGKTNQKTYMKRDITL 608
+ F+P I E +E +DV+G ++ EL N + D+TL
Sbjct: 120 ----------FDFMPFNEILEAKREEKVVDVIGQAVERDELKE--KDVNGRRSKIMDLTL 167
Query: 609 VDQSQASVTMTLWGKEAETF-------DASNKPVIAVKAARVSEFQGNLLLMREIQDQQL 661
D V TLW AE D S+ V+ ++ ++ ++QG + + +
Sbjct: 168 QDFESRRVRCTLWANYAERMNSFLVAHDPSSPVVVLIQHCKLKKYQGIMGISNTKRMTIE 227
Query: 662 GMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKV--IDQNNGMYRCEKCNKEFNTFT 719
+ + + C +GI+ + + Q C K V + G C KCN NT
Sbjct: 228 DLIEATEQC--QGIVLATICGIESEYSWYYQTCTKCVGRVRTVAGRLYCGKCNTGRNTVP 285
Query: 720 -YRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV----GESTEDHPA 764
++L + VM D T S LF + + T Q++ + D+P+
Sbjct: 286 GFKLHVQVM--DNTGSTSFILFDRNVSNYVNRTIQDMIDAQANNLSDYPS 333
>gi|345481222|ref|XP_003424319.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Nasonia vitripennis]
Length = 128
Score = 54.7 bits (130), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 324 KIPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELN 383
K+ DG NSF ML T LN ++ L+E++I++IK Y+++ + T +SV++IL +
Sbjct: 36 KLSDGRTYNSFVMLGTPLNFLVHSNFLTEYSILKIKNYVITHIKVNGQT-KSVMVILNSD 94
Query: 384 IIKPGTEIGFKIGN 397
++ PG E+ +G+
Sbjct: 95 VLAPGHEVKKVLGS 108
>gi|8569640|pdb|1EWI|A Chain A, Human Replication Protein A: Global Fold Of The N-Terminal
Rpa-70 Domain Reveals A Basic Cleft And Flexible C-
Terminal Linker
Length = 114
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
DG+N S MLATQLN ++ + LS + QI R+IV+ + G R V+I++EL ++K
Sbjct: 48 DGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDG----RRVVILMELEVLK 103
Query: 387 PGTEIGFKIGN 397
+G KIGN
Sbjct: 104 SAEAVGVKIGN 114
>gi|413943269|gb|AFW75918.1| hypothetical protein ZEAMMB73_045866 [Zea mays]
Length = 514
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 4 APANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN--ID 61
AP+ + ++N + FT T ED P Y + I ++ ID
Sbjct: 35 APSRNYYKPVDNSMMIQFTLYTQA-KVVEDPPPTFPRYAYKLTSFENIGNNVDNKTYLID 93
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF-------DAS 114
VLG+ + L V G N + RDI L D + S +TLWG +A +F +
Sbjct: 94 VLGILTEIGSLYHV-GYNNSN--IIRDIFLKDINNTSTKVTLWGHQASSFSVDNICDEND 150
Query: 115 NKPVIAVKAARVSE-FQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST 161
NKP++ + +++ F+G LS + + NPDIPE F T
Sbjct: 151 NKPIVVLFVGCLAKRFKGEAYLSATTACTWYFNPDIPEAQVYYNNFHT 198
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 489 GEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
EI+A + +D+ + +I+ DKVY + + P+ + ++N + FT T
Sbjct: 7 AEIQAALVDDKGS----LIQIDKVYELKRFRVAPSRNYYKPVDNSMMIQFTLYTQA-KVV 61
Query: 549 EDEVGNMPSVKYCFVPLKTIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQKTYMKRDI 606
ED P Y + I ++ IDVLG+ + L V G N + RDI
Sbjct: 62 EDPPPTFPRYAYKLTSFENIGNNVDNKTYLIDVLGILTEIGSLYHV-GYNNSN--IIRDI 118
Query: 607 TLVDQSQASVTMTLWGKEAETF-------DASNKPVIAVKAARVSE-FQGNLLL 652
L D + S +TLWG +A +F + NKP++ + +++ F+G L
Sbjct: 119 FLKDINNTSTKVTLWGHQASSFSVDNICDENDNKPIVVLFVGCLAKRFKGEAYL 172
>gi|413935698|gb|AFW70249.1| hypothetical protein ZEAMMB73_039348 [Zea mays]
Length = 416
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 111/264 (42%), Gaps = 16/264 (6%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI-AEISPDEN-IDVL 63
A + F ++ D + FT+ T +I + D P Y PL I + I +E +DVL
Sbjct: 55 ARQMFKPVHIDKMIHFTYHT-IIKASLDSPSTFPRYVYHLTPLHQIESYIQKNEYFLDVL 113
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF---DASN----K 116
GV + L V +T + + + ++I + D + ++ +TLW + A+ F D N K
Sbjct: 114 GVITQVSALKPVRTQTRESSNVIKEIIIKDINDVTMRLTLWAERAKAFKLDDVYNPLEQK 173
Query: 117 PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGG 176
P++ + +++ G L+ + NPDI E F +Q + + S++
Sbjct: 174 PIVTLFVGCLAKNFQGAYLNGGTTCRWYFNPDIKEAAPYYQRFGSQ-KVKLQIPSEQEQQ 232
Query: 177 MGGGAAGNL--LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVI 234
+ ++ + E+ K Y II+V + + AC C++
Sbjct: 233 LSVAKETHVEHKTLHELLALDPYAFPKQGYECTVTIIEVPTTNRWWFPAC--TKCSRACR 290
Query: 235 DQNNGMYRCEKCNKEFNTFTYRLI 258
Q+ G Y C C E T +++
Sbjct: 291 PQDGGYY-CSYCKSEAYTLRSQVL 313
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 11/146 (7%)
Query: 516 SNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI-AEISPD 574
S T+ A + F ++ D + FT+ T +I + D P Y PL I + I +
Sbjct: 48 SRFTISSARQMFKPVHIDKMIHFTYHT-IIKASLDSPSTFPRYVYHLTPLHQIESYIQKN 106
Query: 575 EN-IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF---DA 630
E +DVLGV + L V +T + + + ++I + D + ++ +TLW + A+ F D
Sbjct: 107 EYFLDVLGVITQVSALKPVRTQTRESSNVIKEIIIKDINDVTMRLTLWAERAKAFKLDDV 166
Query: 631 SN----KPVIAVKAARVSE-FQGNLL 651
N KP++ + +++ FQG L
Sbjct: 167 YNPLEQKPIVTLFVGCLAKNFQGAYL 192
>gi|413950982|gb|AFW83631.1| hypothetical protein ZEAMMB73_494259 [Zea mays]
Length = 489
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 5/135 (3%)
Query: 519 TLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP---LKTIAEISPDE 575
++ AN+ + ++ND + FT TT+ E P + Y P L T+ +I +
Sbjct: 133 VIRKANRMYKPVDNDIMIGFTKWTTIEALIEVPPA-FPEIVYSLTPFDQLTTLVDIR-EY 190
Query: 576 NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPV 635
IDV+G ++++++ K Q KR IT+ ++S + + LWG++A +F A +
Sbjct: 191 FIDVIGAVTMISDVATIRTKMRQTQTAKRSITIQNESCTPLEVVLWGEQATSFPADQISI 250
Query: 636 IAVKAARVSEFQGNL 650
+ ++ F G L
Sbjct: 251 AGQDSLQIIIFVGTL 265
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 5/129 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP---LKTIAEISPDENIDV 62
AN+ + ++ND + FT TT+ E P + Y P L T+ +I + IDV
Sbjct: 137 ANRMYKPVDNDIMIGFTKWTTIEALIEVPPA-FPEIVYSLTPFDQLTTLVDIR-EYFIDV 194
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVK 122
+G ++++++ K Q KR IT+ ++S + + LWG++A +F A +
Sbjct: 195 IGAVTMISDVATIRTKMRQTQTAKRSITIQNESCTPLEVVLWGEQATSFPADQISIAGQD 254
Query: 123 AARVSEFQG 131
+ ++ F G
Sbjct: 255 SLQIIIFVG 263
>gi|218189336|gb|EEC71763.1| hypothetical protein OsI_04360 [Oryza sativa Indica Group]
Length = 397
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 4/171 (2%)
Query: 484 LLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHST 542
L+DE G + A + E ++F ++++ KVY S + P+ + N Y + T T
Sbjct: 20 LIDEKGNAMYAEIPGVEADKFRPLLQESKVYTFSKFLVLPSKPAYKPFPNKYMIKLTPWT 79
Query: 543 TVIPCNEDEVGNMPSVKYCFVPLKTIA-EISPDENI-DVLGVCIDAAELSSVTGKTNQKT 600
V NE + PS + V ++ + E DV+G+ I ++L+ V +
Sbjct: 80 NVEQVNE-VPADFPSHVFNLVQFSDLSLRVGMQEYFTDVIGMIIGVSKLAYVRMASKTSD 138
Query: 601 YMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL 651
KR I L D + V + LWG+ A FD + A V F G L+
Sbjct: 139 TPKRVIALRDLANCEVKLVLWGEHALDFDVDAVHNVGQDNAVVGIFVGTLM 189
Score = 40.8 bits (94), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 66/165 (40%), Gaps = 11/165 (6%)
Query: 1 MLAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIA-EISPDEN 59
L P+ + N Y + T T V NE + PS + V ++ + E
Sbjct: 55 FLVLPSKPAYKPFPNKYMIKLTPWTNVEQVNE-VPADFPSHVFNLVQFSDLSLRVGMQEY 113
Query: 60 I-DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPV 118
DV+G+ I ++L+ V + KR I L D + V + LWG+ A FD
Sbjct: 114 FTDVIGMIIGVSKLAYVRMASKTSDTPKRVIALRDLANCEVKLVLWGEHALDFDVDAVHN 173
Query: 119 IAVKAARVSEFQGG--------KTLSLSMSSVLSLNPDIPECHKL 155
+ A V F G +TLS + LN DIPE ++
Sbjct: 174 VGQDNAVVGIFVGTLMKAYNNEETLSGGSACKWYLNEDIPEINQF 218
>gi|321456599|gb|EFX67702.1| hypothetical protein DAPPUDRAFT_330803 [Daphnia pulex]
Length = 165
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 7/90 (7%)
Query: 333 SFAMLATQLNDIITDGTLSEFTIVQIKRYIVSG---VSSGSATNRSVLIIL-ELNIIKPG 388
++ MLAT+LN ++ DG FTI+++K+++++ V+S + + IIL ++ + P
Sbjct: 64 TYGMLATKLNHLVEDGQFEIFTIIKVKKFVITFPTVVASKADGKKGYEIILWDIVPLVPS 123
Query: 389 TEIGFKIGNPQPLNTNTDNSSTQQTPAATN 418
+E+G +GNPQ +N D+ P+ TN
Sbjct: 124 SEVGEMLGNPQTVN---DDGEVADVPSITN 150
>gi|333988515|ref|YP_004521122.1| Replication factor-A domain-containing protein [Methanobacterium
sp. SWAN-1]
gi|333826659|gb|AEG19321.1| Replication factor-A domain protein [Methanobacterium sp. SWAN-1]
Length = 798
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 81/349 (23%), Positives = 157/349 (44%), Gaps = 54/349 (15%)
Query: 457 IKARVTNKTPIREWNNARGS-GKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYI 515
I R+ N E+ + G+ G + +I++ D +G IR+++++D+ + E D V I
Sbjct: 433 IVGRIVNVYDPNEFQRSDGTTGLVRTIEIGDSTGVIRSSLWDDKAE--MPLKEGDPVK-I 489
Query: 516 SNCTLKPANKKFSSINNDY-EMSFTHSTTVIPCNEDEVGNMPS---VKYCFVPLKTIAEI 571
N + DY E+S ++ + +E+ ++PS ++ K I E+
Sbjct: 490 ENARTRLG---------DYMELSIGKTSRISEPTPEEIKDIPSLTEIENRIYTTKKIDEL 540
Query: 572 SP-DENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA 630
+ D N+ ++G I+ + + + + T + R I + D S + +LW +AE
Sbjct: 541 TESDRNVRLIGRIINVYDPNKFQ-RNDGTTGLVRTIEIGD-STGVIRSSLWDDKAEVPLK 598
Query: 631 SNKPV------IAVKAARVSEFQGNLLLM--------------REIQD-----QQLGMGD 665
PV + ++ RV G L+ EI+D +++ +
Sbjct: 599 EGDPVKIENPQVKMRENRVEISIGRSTLVTKPKEDEIEKLPSFDEIKDMIYKTRKIDEIE 658
Query: 666 KADYCSVRGIIQVFR--GSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLI 723
+ D +++ I QV G+ Y+ CP+ CNK+V +N Y C+ C +E Y +I
Sbjct: 659 EEDQ-NIKVIGQVVEAYGNKILYEMCPN--CNKRVTFSDNA-YICDICGEEIENPNYLMI 714
Query: 724 LPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG---ESTEDHPALKKAL 769
+ ++ D T ++ T F+ AE ++G+ EV E T D +L++ +
Sbjct: 715 ISCVVEDDTGTMRTTFFRTAAEELIGMNTDEVRDVIEKTGDEGSLEEKV 763
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 216 GSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLF 275
G+ Y+ CP+ CNK+V +N Y C+ C +E Y +I+ ++ D T ++ T F
Sbjct: 675 GNKILYEMCPN--CNKRVTFSDNA-YICDICGEEIENPNYLMIISCVVEDDTGTMRTTFF 731
Query: 276 QNEAESILGVTAQEVG---ESTEDHPALKKAL 304
+ AE ++G+ EV E T D +L++ +
Sbjct: 732 RTAAEELIGMNTDEVRDVIEKTGDEGSLEEKV 763
>gi|442748039|gb|JAA66179.1| Hypothetical protein [Ixodes ricinus]
Length = 103
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 257 LILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----LKKALFTQYIFR 311
+IL V I D+ ++ WVT FQ AE+ILG + +GE + + + A F ++F+
Sbjct: 1 MILSVNIADYQDNQWVTCFQESAEAILGQSTAYLGELKDKNEQAFEEIFQNANFRSFVFK 60
Query: 312 LRAKLEHYNGTKKIPDGV 329
+R KLE YN +I V
Sbjct: 61 IRVKLETYNDESRIKATV 78
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 722 LILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----LKKALFTQYIFR 776
+IL V I D+ ++ WVT FQ AE+ILG + +GE + + + A F ++F+
Sbjct: 1 MILSVNIADYQDNQWVTCFQESAEAILGQSTAYLGELKDKNEQAFEEIFQNANFRSFVFK 60
Query: 777 LRAKLEHYN 785
+R KLE YN
Sbjct: 61 IRVKLETYN 69
>gi|328716198|ref|XP_003245862.1| PREDICTED: hypothetical protein LOC100570100 [Acyrthosiphon pisum]
Length = 342
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 319 YNGTKKIPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLI 378
YN T + DG NI + L LN ++ G L++F++++I Y+++ + + R V+I
Sbjct: 52 YNLT--VSDGENIINSVELGIHLNSMLDTGILTKFSLIKINNYLITNIIEPAKEPRQVII 109
Query: 379 ILELNIIKPGTEIGFKIGNPQPLNTNTD 406
L +I PG+ I IGNP+P++ N +
Sbjct: 110 FSNLAVIVPGSIIFKTIGNPRPISNNIE 137
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 80/154 (51%), Gaps = 19/154 (12%)
Query: 270 VWVTLFQNEAES-ILGVTA-QEVGESTE-DHPALKKALFTQYIFRLRAKLEHYNGTKK-- 324
+W +L + S +L V A Q + ++ E +P ++ + +R ++ +G K
Sbjct: 164 IWKSLIERGLYSRLLTVGALQSILDNVEVKYPVMQ-------VINIRQLIDTASGLNKYR 216
Query: 325 --IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILEL 382
I DG + ++F MLAT+LN++IT+G L++F+I+ I+ Y+V G+ S +L L
Sbjct: 217 LMISDGQHFSTFVMLATRLNNMITNGYLTKFSIIYIRSYVV-GLLGQSIKKVIILTDLVC 275
Query: 383 NIIKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAA 416
+ +PG IG+P+P+ + PA+
Sbjct: 276 LVTRPGA----MIGDPKPVREISGQVIENSIPAS 305
>gi|414877599|tpg|DAA54730.1| TPA: hypothetical protein ZEAMMB73_628014 [Zea mays]
Length = 495
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 99/229 (43%), Gaps = 36/229 (15%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREW--NNARGSGKLFSIDLL--DESG-----EIRATM 495
+ L P I+ RV IR+W A G L I+L+ DE G EI A +
Sbjct: 9 MTELHPQSTNVVIRVRV-----IRKWEFRGATNDGPLQHINLVLADEQGTSIHAEIAAAL 63
Query: 496 FNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNM 555
D+ + +IE +KVY + + P+ F ++N++ + FT T +D
Sbjct: 64 AVDKGS----LIEIEKVYELKRFRVTPSRNYFKPVDNNFMIQFTLYTQA-KVVKDPPQMF 118
Query: 556 PSVKYCFVPLKTIAEISPDEN--IDVLGVC--IDAAELSSVTGKTNQKTYMKRDITLVDQ 611
P Y + I + + IDVLG+ ID L T + RDI + +
Sbjct: 119 PRYIYKLTSFENIEDNIDNRTYLIDVLGMLTQIDPPHLIGYNNST-----IIRDIYIKNA 173
Query: 612 SQASVTMTLWGKEAETFD-------ASNKPVIAVKAARVSE-FQGNLLL 652
S S+ +TLWG +A F +SN+P++ + +++ F+G L
Sbjct: 174 SDMSLKITLWGNQASNFSISDVYNQSSNQPIVILLVGFLAKRFKGQPYL 222
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 113/294 (38%), Gaps = 26/294 (8%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN--IDV 62
P+ F ++N++ + FT T +D P Y + I + + IDV
Sbjct: 86 PSRNYFKPVDNNFMIQFTLYTQA-KVVKDPPQMFPRYIYKLTSFENIEDNIDNRTYLIDV 144
Query: 63 LGVC--IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD-------A 113
LG+ ID L T + RDI + + S S+ +TLWG +A F +
Sbjct: 145 LGMLTQIDPPHLIGYNNST-----IIRDIYIKNASDMSLKITLWGNQASNFSISDVYNQS 199
Query: 114 SNKPVIAVKAARVSE-FQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQ 172
SN+P++ + +++ F+G LS + +S NP IPE +P +
Sbjct: 200 SNQPIVILLVGFLAKRFKGQPYLSGTTASSWYFNPGIPEAQTYYNRLQNNDLQLIQPTAA 259
Query: 173 RTGGMGGGAAGNL--LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCN 230
+ + NL + E+ D M Y I ++ + S Y +C C+
Sbjct: 260 KE-EIQVSQPPNLEHKTVEELLDIDPDMFPPEGYRCTVTISRIVQNSKWWYPSC--SRCH 316
Query: 231 KKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILG 284
K + G Y C C F Y+L + D T F + A I+G
Sbjct: 317 KSSSQTSTG-YHCTSCGCTDINFRYKLSF--IATDGTCEAEFFCFDSIARKIVG 367
>gi|348687513|gb|EGZ27327.1| hypothetical protein PHYSODRAFT_376071 [Phytophthora sojae]
Length = 68
Score = 53.9 bits (128), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 455 WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNRFHDMIEKDKVY 513
W RV +++PIRE+ N RG G+L I + D +G+ IR T+FN+ F+D++
Sbjct: 1 WAFVCRVLSRSPIREYTNLRGGGRLIEIYVGDAAGDTIRITLFNEAVTAFYDVVSPGSTC 60
Query: 514 YISNCTLK 521
Y S +K
Sbjct: 61 YFSAGRIK 68
>gi|414877600|tpg|DAA54731.1| TPA: hypothetical protein ZEAMMB73_628014, partial [Zea mays]
Length = 489
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 99/229 (43%), Gaps = 36/229 (15%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREW--NNARGSGKLFSIDLL--DESG-----EIRATM 495
+ L P I+ RV IR+W A G L I+L+ DE G EI A +
Sbjct: 9 MTELHPQSTNVVIRVRV-----IRKWEFRGATNDGPLQHINLVLADEQGTSIHAEIAAAL 63
Query: 496 FNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNM 555
D+ + +IE +KVY + + P+ F ++N++ + FT T +D
Sbjct: 64 AVDKGS----LIEIEKVYELKRFRVTPSRNYFKPVDNNFMIQFTLYTQA-KVVKDPPQMF 118
Query: 556 PSVKYCFVPLKTIAEISPDEN--IDVLGVC--IDAAELSSVTGKTNQKTYMKRDITLVDQ 611
P Y + I + + IDVLG+ ID L T + RDI + +
Sbjct: 119 PRYIYKLTSFENIEDNIDNRTYLIDVLGMLTQIDPPHLIGYNNST-----IIRDIYIKNA 173
Query: 612 SQASVTMTLWGKEAETFD-------ASNKPVIAVKAARVSE-FQGNLLL 652
S S+ +TLWG +A F +SN+P++ + +++ F+G L
Sbjct: 174 SDMSLKITLWGNQASNFSISDVYNQSSNQPIVILLVGFLAKRFKGQPYL 222
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 113/294 (38%), Gaps = 26/294 (8%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN--IDV 62
P+ F ++N++ + FT T +D P Y + I + + IDV
Sbjct: 86 PSRNYFKPVDNNFMIQFTLYTQA-KVVKDPPQMFPRYIYKLTSFENIEDNIDNRTYLIDV 144
Query: 63 LGVC--IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD-------A 113
LG+ ID L T + RDI + + S S+ +TLWG +A F +
Sbjct: 145 LGMLTQIDPPHLIGYNNST-----IIRDIYIKNASDMSLKITLWGNQASNFSISDVYNQS 199
Query: 114 SNKPVIAVKAARVSE-FQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQ 172
SN+P++ + +++ F+G LS + +S NP IPE +P +
Sbjct: 200 SNQPIVILLVGFLAKRFKGQPYLSGTTASSWYFNPGIPEAQTYYNRLQNNDLQLIQPTAA 259
Query: 173 RTGGMGGGAAGNL--LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCN 230
+ + NL + E+ D M Y I ++ + S Y +C C+
Sbjct: 260 KE-EIQVSQPPNLEHKTVEELLDIDPDMFPPEGYRCTVTISRIVQNSKWWYPSC--SRCH 316
Query: 231 KKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILG 284
K + G Y C C F Y+L + D T F + A I+G
Sbjct: 317 KSSSQTSTG-YHCTSCGCTDINFRYKLSF--IATDGTCEAEFFCFDSIARKIVG 367
>gi|242086609|ref|XP_002439137.1| hypothetical protein SORBIDRAFT_09g001220 [Sorghum bicolor]
gi|241944422|gb|EES17567.1| hypothetical protein SORBIDRAFT_09g001220 [Sorghum bicolor]
Length = 388
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 11/136 (8%)
Query: 196 LGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFN 251
LG K + +V+ I+ V + Y ACP CN + + C++C+ F
Sbjct: 168 LGYLVKPELFTVKAILSVMNSESLCYAACPLVVNGYQCNGAITSNGYEWWNCDECSMTFA 227
Query: 252 TFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE---VGESTEDHPALKKALF--- 305
YR + V + D T ++ T Q E I G TA+E V +DH K +
Sbjct: 228 ACDYRYKIFVQLADSTGEIYATTSQAVGEEIFGQTARELYLVKYEKQDHAQYNKIVMGVQ 287
Query: 306 -TQYIFRLRAKLEHYN 320
+Y+ ++ LE ++
Sbjct: 288 NCEYLLEVKLNLEAFS 303
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 11/136 (8%)
Query: 661 LGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFN 716
LG K + +V+ I+ V + Y ACP CN + + C++C+ F
Sbjct: 168 LGYLVKPELFTVKAILSVMNSESLCYAACPLVVNGYQCNGAITSNGYEWWNCDECSMTFA 227
Query: 717 TFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE---VGESTEDHPALKKALF--- 770
YR + V + D T ++ T Q E I G TA+E V +DH K +
Sbjct: 228 ACDYRYKIFVQLADSTGEIYATTSQAVGEEIFGQTARELYLVKYEKQDHAQYNKIVMGVQ 287
Query: 771 -TQYIFRLRAKLEHYN 785
+Y+ ++ LE ++
Sbjct: 288 NCEYLLEVKLNLEAFS 303
>gi|304315505|ref|YP_003850652.1| replication factor A [Methanothermobacter marburgensis str.
Marburg]
gi|302588964|gb|ADL59339.1| predicted replication factor A [Methanothermobacter marburgensis
str. Marburg]
Length = 792
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/355 (19%), Positives = 142/355 (40%), Gaps = 70/355 (19%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
I+ + + + R+ + + RE+ G+G + S++L DE+G IR ++++++ +
Sbjct: 412 ILEMEDEGEEVDVAGRIFSLSDPREFERQDGTGIVRSMELADETGRIRVSLWDEKAEKPL 471
Query: 505 DMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPS---VKYC 561
++ I N ++ S+ E++ +T ++ +++ N+PS ++
Sbjct: 472 NV---GDAVRIENARIRLG---LYSV----ELNTGRTTRIVEPLPEDIENLPSFEELEEM 521
Query: 562 FVPLKTIAEISPDE-NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTL 620
K I E+ D+ NI ++ +D + + + + R + D + S+ +L
Sbjct: 522 LYTTKKIDELEEDDRNIRIIARVVDLFDPREFQ-RGDGTPGLVRTVEFADDT-GSIRASL 579
Query: 621 WGKEAETFDASNKPVIAVKAARVS------------------------------------ 644
W DA+ +P+ A R+
Sbjct: 580 WD------DAAERPLSIGDAVRIENPRVIYRDDMGGERLELSIGRNSRIEPATERDISGL 633
Query: 645 ----EFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVID 700
E Q L + I+D Q + + ++G + G CPS CN+++
Sbjct: 634 PSFEELQEILYPLVNIEDLQ----EDSRNVMIKGELTEMSGRRILSIKCPS--CNERLEL 687
Query: 701 QNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 755
+ + C C + Y L++P I D T V +T F EAE +LG++ +EV
Sbjct: 688 SDENI--CNFCGALVDEPRYLLMIPGRIMDDTGEVLITFFGREAEKLLGMSTREV 740
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 118/287 (41%), Gaps = 52/287 (18%)
Query: 18 EMSFTHSTTVIPCNEDEVGNMPS---VKYCFVPLKTIAEISPDE-NIDVLGVCIDAAELS 73
E++ +T ++ +++ N+PS ++ K I E+ D+ NI ++ +D +
Sbjct: 492 ELNTGRTTRIVEPLPEDIENLPSFEELEEMLYTTKKIDELEEDDRNIRIIARVVDLFDPR 551
Query: 74 SVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVS------ 127
+ + + R + D + S+ +LW DA+ +P+ A R+
Sbjct: 552 EFQ-RGDGTPGLVRTVEFADDT-GSIRASLWD------DAAERPLSIGDAVRIENPRVIY 603
Query: 128 -EFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQR-TGGMGGGAAGNL 185
+ GG+ L LS+ N+R EP ++R G+
Sbjct: 604 RDDMGGERLELSIGR----------------------NSRIEPATERDISGLPSFEELQE 641
Query: 186 LL--MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+L + I+D Q + + ++G + G CPS CN+++ + + C
Sbjct: 642 ILYPLVNIEDLQ----EDSRNVMIKGELTEMSGRRILSIKCPS--CNERLELSDENI--C 693
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 290
C + Y L++P I D T V +T F EAE +LG++ +EV
Sbjct: 694 NFCGALVDEPRYLLMIPGRIMDDTGEVLITFFGREAEKLLGMSTREV 740
>gi|413945694|gb|AFW78343.1| hypothetical protein ZEAMMB73_306379, partial [Zea mays]
Length = 439
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 5/149 (3%)
Query: 484 LLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHST 542
LLDE G I AT++ +F +I++ VY ++ ++ +N + + ND ++FT+
Sbjct: 3 LLDEEGNSIHATIYPPFIEKFRPLIKEGSVYNMTYFRVRASNNLYKPVPNDIMITFTNWK 62
Query: 543 TVIPCNEDEVGNMPSVKYCFVPLKTIAEI--SPDENIDVLGVCIDAAELSSVTGKTNQKT 600
+ E P++ Y + I D D +G+ + +S K Q +
Sbjct: 63 KLEQVIEIPPA-FPTLTYSLTHIDQIHSRIDHKDYYTDAIGIVTSVSNVSPHRSKGQQAS 121
Query: 601 YMKRDITLVDQSQ-ASVTMTLWGKEAETF 628
+KR+I++ S+ ASV + LWG +A F
Sbjct: 122 SLKRNISICSASRGASVNVVLWGAQATLF 150
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 20/136 (14%)
Query: 57 DENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ-ASVTMTLWGKEAETF---- 111
D D +G+ + +S K Q + +KR+I++ S+ ASV + LWG +A F
Sbjct: 95 DYYTDAIGIVTSVSNVSPHRSKGQQASSLKRNISICSASRGASVNVVLWGAQATLFPGER 154
Query: 112 ---DASNKP-VIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPEC----------HKLQG 157
+ N P ++ V ++ G L+ S +NP IPE HK
Sbjct: 155 IYENGQNSPQIVLFVGTLVKKYADGLCLTGSSPCKWYINPSIPEAETLMSSARGDHKPVK 214
Query: 158 WFSTQTNTRF-EPVSQ 172
W +T T+++ PV++
Sbjct: 215 WNATVTSSQLISPVAE 230
>gi|297725599|ref|NP_001175163.1| Os07g0418100 [Oryza sativa Japonica Group]
gi|255677702|dbj|BAH93891.1| Os07g0418100 [Oryza sativa Japonica Group]
Length = 2266
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 5/167 (2%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDEC-NRF 503
I SL P T++ R++ R+ N+ + L+D+ G A M C N+F
Sbjct: 1440 IASLEPGDGNPTLRIRISRLWEYRDQND-ESILHYIGLVLVDQKGSSIAAMIYPPCDNKF 1498
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+I + KVY ++ +KP K + ++N ++FT +TV C D N Y
Sbjct: 1499 KPLITEGKVYLLTYYRVKPCTKHYRPVDNKLAITFTWWSTVEEC-VDVPDNFAQYAYSLK 1557
Query: 564 PLKTIAEI--SPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITL 608
P + D DV+G+ + + +++V + +KR++ +
Sbjct: 1558 PFNELRSHVDRKDSFTDVIGIITEISSVTTVQTRIKDGDSLKRNVYI 1604
>gi|402223355|gb|EJU03420.1| hypothetical protein DACRYDRAFT_106580, partial [Dacryopinax sp.
DJM-731 SS1]
Length = 344
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 48 LKTIAEISPDENIDVLGVCIDAAEL----------------SSVTGKTNQKTYMKRDITL 91
L +A + +++LGV + +L S+ T QK+ M ++ +
Sbjct: 163 LSFLAALEDKSKVNILGVILQVGKLVTKPIAMRSASVALDGSTQQASTKQKSRMLCEVQV 222
Query: 92 VDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPE 151
VD+ V +T+W A+ F + V+ V + V E +GG TL+ S + LNP I E
Sbjct: 223 VDKEGHVVRVTMWNSRAKIFSGKHGQVLHVMNS-VVEHRGGVTLNSSEKTEFPLNPKIEE 281
Query: 152 CHKLQGWFSTQTN-TRFEPVS---QRTGGMGGGAAGNL---LLMREIQDQQLGMGDKADY 204
+L+ WF+ + + +S + GG+ L L +++ +LG GD DY
Sbjct: 282 ADELKQWFTDGFDEAALKHISCGYSKEGGLTSTTLEELPKVLTKAQVRASRLGHGDCIDY 341
>gi|321464047|gb|EFX75058.1| hypothetical protein DAPPUDRAFT_108305 [Daphnia pulex]
Length = 311
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 19/147 (12%)
Query: 32 EDEVGNMPSVKYCFVPLKTIAEISPD---------ENIDVLGVCIDAAELSSVTGKTNQK 82
++E+ ++ + + + L+++ I P+ I+V+G + E+ +T KT K
Sbjct: 168 DNEISSLHQIAHGLMSLQSLYGIFPNVVGLKMISSYFIEVIGGLYEIGEI--ITIKT-AK 224
Query: 83 TYMKRDITLVDQSQASVTMTLWGKEAETF----DASNKPVIAVKAARVSEF--QGGKTLS 136
KR+I ++DQS T+T+W AE F + V+A ++S F + G+
Sbjct: 225 ASTKREIKIIDQSYNKFTITMWNTIAEKFIIAVEKLEDVVVAFTGIKISTFSREDGEIFL 284
Query: 137 LSMSSVL-SLNPDIPECHKLQGWFSTQ 162
S L S+NPDIPE +L+ W Q
Sbjct: 285 DSFDDTLVSINPDIPESAELKRWLKQQ 311
>gi|413917541|gb|AFW57473.1| retrotransposon protein [Zea mays]
Length = 581
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 89/201 (44%), Gaps = 26/201 (12%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREW--NNARGSGKLFSIDLL--DESG-----EIRAT 494
P+ L P I+ RV IR+W A G L I+L+ DE G EI A
Sbjct: 48 PVAELHPQSTNVVIRVRV-----IRKWEFRGATNDGPLQHINLVLADEQGTPIHAEIAAA 102
Query: 495 MFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN 554
+ D+ + +IE +KVY + + P+ F ++N++ + FT T +D
Sbjct: 103 LAVDKGS----IIEIEKVYELKRFRVTPSRNYFKPVDNNFMIQFTLYTQA-KVVKDPPQV 157
Query: 555 MPSVKYCFVPLKTIAEISPDEN---IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ 611
P Y + I E S D IDVLG+ V G N + + RDI + +
Sbjct: 158 FPRYIYKLTCFENI-EDSIDNRTYLIDVLGMLTQINPPHPV-GYNN--STIIRDIFIKNT 213
Query: 612 SQASVTMTLWGKEAETFDASN 632
S S+ +TLWG +A +F S+
Sbjct: 214 SDMSLKITLWGNQASSFSISD 234
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 81/348 (23%), Positives = 135/348 (38%), Gaps = 48/348 (13%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN---ID 61
P+ F ++N++ + FT T +D P Y + I E S D ID
Sbjct: 126 PSRNYFKPVDNNFMIQFTLYTQA-KVVKDPPQVFPRYIYKLTCFENI-EDSIDNRTYLID 183
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN------ 115
VLG+ V G N + + RDI + + S S+ +TLWG +A +F S+
Sbjct: 184 VLGMLTQINPPHPV-GYNN--STIIRDIFIKNTSDMSLKITLWGNQASSFSISDVYNQSN 240
Query: 116 -KPVIAVKAARVSE-FQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQR 173
+P++ + +++ F+G LS + +S NP IPE Q +++ N + +
Sbjct: 241 KQPIVILLVGFLAKRFKGQPYLSSTAASSWYFNPVIPEA---QTYYNRLQNNDLQLIQ-- 295
Query: 174 TGGMGGGAAGNLLL----------MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKA 223
A +LL + E+ + M Y I ++ + S Y +
Sbjct: 296 ----PTAAEEEILLSQPPNLEQKTVEELLNIDPDMFPPEGYRCTVTISRIVQNSKWWYPS 351
Query: 224 CPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL 283
C C+K + G Y C C F Y+L + D T F N A I+
Sbjct: 352 C--SRCHKSSSQTSTG-YHCTSCGCTDINFRYKLSF--IATDGTCEAEFFCFDNIARKIV 406
Query: 284 G------VTAQEVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
G VTA V S AL + ++ + + Y+ T ++
Sbjct: 407 GKPCDNLVTA--VATSQGPPAALAAIVCLKFTLAVTINMSAYSVTNRV 452
>gi|414589506|tpg|DAA40077.1| TPA: hypothetical protein ZEAMMB73_356509 [Zea mays]
Length = 388
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 91/211 (43%), Gaps = 35/211 (16%)
Query: 448 LSPYQNKWTIKARVTNKTPIREW--NNARGSGKLFSIDLL--DESG-----EIRATMFND 498
L P I+ RV IR+W A G L I+L+ DE G EI A + D
Sbjct: 40 LHPQSTNAIIRVRV-----IRKWEFRGATNDGPLQHINLVLADEQGTPIHAEIAAALAVD 94
Query: 499 ECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV 558
+ + MIE +KVY + + P+ F ++N++ + FT T +D P
Sbjct: 95 KGS----MIEIEKVYELKRFRVTPSRNYFKPVDNNFMIQFTLYTQA-KVVKDPPQVFPRY 149
Query: 559 KYCFVPLKTIAEISPDEN--IDVLGVC--IDAAELSSVTGKTNQKTYMKRDITLVDQSQA 614
Y + I + + IDVLG+ I+ L T + RDI + + S
Sbjct: 150 IYKLTCFENIEDNIDNRTYLIDVLGMLTQINPPHLIGYNNST-----IIRDIFIKNTSDM 204
Query: 615 SVTMTLWGKEAETFDAS-------NKPVIAV 638
S+ +TLWG +A +F S N+P++ +
Sbjct: 205 SLKITLWGNQASSFSISDVYNQSNNQPIVIL 235
Score = 45.8 bits (107), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 18/160 (11%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN--IDV 62
P+ F ++N++ + FT T +D P Y + I + + IDV
Sbjct: 114 PSRNYFKPVDNNFMIQFTLYTQA-KVVKDPPQVFPRYIYKLTCFENIEDNIDNRTYLIDV 172
Query: 63 LGVC--IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS------ 114
LG+ I+ L T + RDI + + S S+ +TLWG +A +F S
Sbjct: 173 LGMLTQINPPHLIGYNNST-----IIRDIFIKNTSDMSLKITLWGNQASSFSISDVYNQS 227
Query: 115 -NKPVIAVKAARVSE-FQGGKTLSLSMSSVLSLNPDIPEC 152
N+P++ + +++ F+G LS + +S NP IPE
Sbjct: 228 NNQPIVILLVRFLAKRFKGQPYLSSTTASSWYFNPGIPEA 267
>gi|12322096|gb|AAG51090.1|AC027032_10 hypothetical protein [Arabidopsis thaliana]
Length = 567
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 19/185 (10%)
Query: 448 LSPYQNKWTIKARVTNKTPIREW----NNARGSGKLFSIDLLDESGE-IRATMFNDECNR 502
+ PY+N W ++ ++ + W +N R + +L + DE G+ + AT+ + ++
Sbjct: 11 VRPYKNAWRVQVKI-----LHSWKQYTSNTRETIELV---ISDEHGKKMHATVKKELVSK 62
Query: 503 F-HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC 561
F H +I + V+ I L A+ +F N+ Y+M+F T V+ C N ++
Sbjct: 63 FVHKLIVGEWVF-IEIFGLTYASGQFRPTNHLYKMAFQVRTEVMGCASVSDSNFLTLA-S 120
Query: 562 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
F +++ E++P +D +G I EL + K N K K D + DQ + +TLW
Sbjct: 121 FSKIQS-GELNPHMLVDAIGQIITVGELEEL--KANNKRTTKIDFEIRDQMDERMQVTLW 177
Query: 622 GKEAE 626
G A+
Sbjct: 178 GTYAQ 182
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 121/311 (38%), Gaps = 51/311 (16%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A+ +F N+ Y+M+F T V+ C N ++ F +++ E++P +D +G
Sbjct: 83 ASGQFRPTNHLYKMAFQVRTEVMGCASVSDSNFLTLA-SFSKIQS-GELNPHMLVDAIGQ 140
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
I EL + K N K K D + DQ + +TLWG A+ +A +
Sbjct: 141 IITVGELEEL--KANNKRTTKIDFEIRDQMDERMQVTLWGTYAQE---------VYRACQ 189
Query: 126 VSEFQGG---KTLSLSM-SSVLSLNPDIPECHKLQGWFSTQTNT--------RFEPVS-Q 172
SE + K+LS S +S + +NPD PE H RFE V+ +
Sbjct: 190 ESEGKNTASVKSLSNSFDASQVHVNPDFPEVHDFSQTLLNDGAICVFRARVPRFEMVAVK 249
Query: 173 RT--GGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCN 230
RT NLL E+ G C++ + ++ + + CN
Sbjct: 250 RTDYSEYTRNTIENLLSSTEV-------GKVRVLCTIYAV-----DTDWAWYYISCKTCN 297
Query: 231 KKVIDQNNGM-----------YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEA 279
KKV + G+ + C+ C R ++ + D T + LF +
Sbjct: 298 KKVNHIHAGVNGVNNKGKKPRFWCDTCTSVVTNVVSRYMIYAKVMDSTGEAKLLLFDSIC 357
Query: 280 ESILGVTAQEV 290
I+G +A V
Sbjct: 358 SEIIGESAASV 368
>gi|440799699|gb|ELR20743.1| leucine rich repeat-containing protein [Acanthamoeba castellanii str.
Neff]
Length = 1419
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 22/142 (15%)
Query: 204 YCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNG----------------MYRCEKCN 247
Y SV + R S Y ACP C+KKV + + G + C+ CN
Sbjct: 1242 YASVVCTVNEIRTSGMWYPACPWPKCHKKVEEYHGGDEGYDGEEEGQQHHQKRWYCKTCN 1301
Query: 248 KEF-NTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPAL-----K 301
+ + + R + + I D T +W+ F A +LG +AQE+ + + L K
Sbjct: 1302 RVYAGRYVNRYMASLRIVDHTGDLWLRAFDEAAAPLLGTSAQELSQLKDFDETLFVDKVK 1361
Query: 302 KALFTQYIFRLRAKLEHYNGTK 323
+A ++ R++ E Y G +
Sbjct: 1362 EAQLQRHEMRVKVVQETYQGRR 1383
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 17/106 (16%)
Query: 669 YCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNG----------------MYRCEKCN 712
Y SV + R S Y ACP C+KKV + + G + C+ CN
Sbjct: 1242 YASVVCTVNEIRTSGMWYPACPWPKCHKKVEEYHGGDEGYDGEEEGQQHHQKRWYCKTCN 1301
Query: 713 KEF-NTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE 757
+ + + R + + I D T +W+ F A +LG +AQE+ +
Sbjct: 1302 RVYAGRYVNRYMASLRIVDHTGDLWLRAFDEAAAPLLGTSAQELSQ 1347
>gi|322796628|gb|EFZ19099.1| hypothetical protein SINV_11668 [Solenopsis invicta]
Length = 96
Score = 52.8 bits (125), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 233 VIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE 292
+ D ++RC++C+K + FTYRL+ + + D S W+T F EAE I+G++A+E+ E
Sbjct: 21 IADWGKEIFRCKQCDK-YPNFTYRLV--IELADEAASCWITAFDREAEKIIGMSARELRE 77
Query: 293 STE 295
+E
Sbjct: 78 LSE 80
Score = 52.8 bits (125), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 698 VIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE 757
+ D ++RC++C+K + FTYRL+ + + D S W+T F EAE I+G++A+E+ E
Sbjct: 21 IADWGKEIFRCKQCDK-YPNFTYRLV--IELADEAASCWITAFDREAEKIIGMSARELRE 77
Query: 758 STE 760
+E
Sbjct: 78 LSE 80
>gi|391344163|ref|XP_003746372.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Metaseiulus occidentalis]
Length = 198
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 81/189 (42%), Gaps = 12/189 (6%)
Query: 464 KTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPA 523
K+ ++ + G LFS L D + +I + + + + I+ Y I + +P+
Sbjct: 3 KSDMKTFKKDNTDGNLFSFTLADNTADINVLVTGELGHEMFEKIQTGHCYQICDFKQRPS 62
Query: 524 NKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVC 583
+ + N+ E+ + V + D ++P + + I + + ID+ +
Sbjct: 63 HPLYKVTNHTCELLLGKISEVRQIDGD---HLPKKVEKYFTINQIRDTEVGKMIDLQAII 119
Query: 584 IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG--------KEAETFDASNKPV 635
D E+ S +GK +++I LVD S+ V++TLWG +E + D V
Sbjct: 120 YDVGEIHSYSGKAGD-IRNRQNILLVDDSRKIVSLTLWGSLIHKVDDREGQVVDFQKLSV 178
Query: 636 IAVKAARVS 644
+ K R+S
Sbjct: 179 KSSKLGRIS 187
>gi|32565075|ref|NP_494733.2| Protein R03H10.6 [Caenorhabditis elegans]
gi|351062333|emb|CCD70303.1| Protein R03H10.6 [Caenorhabditis elegans]
Length = 324
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 98/228 (42%), Gaps = 18/228 (7%)
Query: 430 AIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG 489
A + AP PI +L+ + + I RVT ++ R K+FS ++ D +G
Sbjct: 108 ATDQNVDAPPAAVTPIANLNDSVDNFKIHGRVT------LMDDKRRPEKVFSFEITDVNG 161
Query: 490 -EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
IR F + R + I KD+ YY++ +K + ++ + +E+ T+ P
Sbjct: 162 YTIRCVAFGELGVRLYGSIAKDQSYYLTGGKVKNGHTLYNQTGHAFEIILDEFPTIEPA- 220
Query: 549 EDEVGNMPSVKYCFVPLKTIA-EISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDIT 607
V +P + V L + E + IDV+ + + K + R++
Sbjct: 221 -PAVLTVPKLNLNRVMLCNVQNEQYYRKPIDVIVAVEEINDFLDDYHPIENKPPVLRNMV 279
Query: 608 LVDQSQASVTMTLWGKEA-----ETFDASNKPVIAVKAARVSEFQGNL 650
++D S + +TLWG A E F NK ++A K ++F+G L
Sbjct: 280 VIDDSNFRIRLTLWGYRAMDSGVEEF--QNK-IVAFKGIVPTQFEGEL 324
>gi|308080968|ref|NP_001183010.1| uncharacterized protein LOC100501330 [Zea mays]
gi|238008768|gb|ACR35419.1| unknown [Zea mays]
Length = 439
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 113/287 (39%), Gaps = 29/287 (10%)
Query: 26 TVIPCNEDEVGNMPSVKYCFVPLKTIAEIS--PDENIDVLGVCIDAAELSSVTGKTNQKT 83
T++ ++D++ P + PL + + D IDV+ + ++ V T+
Sbjct: 8 TIVLEDKDQIQGFPKYTFSLTPLDKLDQYKNKTDRFIDVIAKISGVSNVAKVPT-TSGDQ 66
Query: 84 YMKRDITLVDQSQASVTMTLWGKEAETFD-------ASNKPVIAVKAARVSEFQGGKTLS 136
M+R + L D + ++L GK A FD VIA+ + + G+
Sbjct: 67 QMRRVVLLEDLKGNMIELSLSGKRALEFDGDQVLDVGQQHHVIAIFVGTLVKLYKGEYTF 126
Query: 137 LSMSSVLSL---NPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQ- 192
LS +S DI E Q + EPV + + A + + ++
Sbjct: 127 LSGTSACRWYINENDIAEIKAFQKSLPS------EPVPIKKTYLQNDDATHKFEEKSLEQ 180
Query: 193 ----DQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNK 248
D L MG + Y II + YKAC + CN +I + NG Y+C K
Sbjct: 181 LKHVDPFLDMGQR--YQCTATIIGITENQTWCYKAC--KICNSAIIQKENG-YKCTKEGC 235
Query: 249 EFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE 295
F ++ +P + D T ++ F+ + ++G +A + + E
Sbjct: 236 PSTQFEWKYKIPFIASDHTYNLEFMFFEKKGMELIGKSASTLRKQYE 282
>gi|14520503|ref|NP_125978.1| replication factor A [Pyrococcus abyssi GE5]
gi|5457718|emb|CAB49209.1| RPA41 subunit of the hetero-oligomeric complex involved in
homologous recombination [Pyrococcus abyssi GE5]
Length = 375
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 122/285 (42%), Gaps = 46/285 (16%)
Query: 46 VPLKTIAEISPD---ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 102
V L I+E+ P ++V+G + T K + I D +A V
Sbjct: 78 VSLMRISELYPGMDPREVNVVGRVLKKYPPREYTRKDGSVGRVASLIIYDDSGRARVV-- 135
Query: 103 LWGKEAETFDASNK----PVIAVKAARVSE-FQGGKTLSLSMSSVLSLNPDIPECHKLQG 157
LW +A+ + NK VI V A+V E G L ++ + + LNPD P +
Sbjct: 136 LW--DAKVSEYYNKIEVGDVIKVLDAQVKESLSGLPELHINFRARIILNPDDPRVEMIPP 193
Query: 158 WFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGII-QVFRG 216
+ T ++I+D + GD+ + VRG I +V+R
Sbjct: 194 LEEVRVAT--------------------YTRKKIKD--IEAGDR--FVEVRGTIAKVYR- 228
Query: 217 SNTTYKACPSQDCNKKV-IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLF 275
TY ACP +C KKV D+ G++ C + + E IL + D T + VTLF
Sbjct: 229 -VLTYDACP--ECKKKVDYDEGLGVWICPE-HGEVQPIKM-TILDFGLDDGTGYIRVTLF 283
Query: 276 QNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAKLEHYN 320
++AE +LGV+ +E+ E ++ + L T+ R A+ E YN
Sbjct: 284 GDDAEELLGVSPEEIAEKIKELE--ESGLTTKEAARKLAEDEFYN 326
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 12/124 (9%)
Query: 664 GDKADYCSVRGII-QVFRGSNTTYKACPSQDCNKKV-IDQNNGMYRCEKCNKEFNTFTYR 721
GD+ + VRG I +V+R TY ACP +C KKV D+ G++ C + + E
Sbjct: 213 GDR--FVEVRGTIAKVYR--VLTYDACP--ECKKKVDYDEGLGVWICPE-HGEVQPIKM- 264
Query: 722 LILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAKL 781
IL + D T + VTLF ++AE +LGV+ +E+ E ++ + L T+ R A+
Sbjct: 265 TILDFGLDDGTGYIRVTLFGDDAEELLGVSPEEIAEKIKELE--ESGLTTKEAARKLAED 322
Query: 782 EHYN 785
E YN
Sbjct: 323 EFYN 326
>gi|414590352|tpg|DAA40923.1| TPA: hypothetical protein ZEAMMB73_767937 [Zea mays]
Length = 212
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 11/161 (6%)
Query: 506 MIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPL 565
+IE +++Y IS + A + I+ D + FT T + P + P Y P
Sbjct: 26 LIETNQIYDISRFRVTAAKTAYKPIDGDKMIQFTIYTIIKP-GSNPPPTFPLYIYQLTPF 84
Query: 566 KTI-AEISPDEN-IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
I ++I +DVLG + L +V + + RD+ + D S+ ++ +TLW K
Sbjct: 85 DEIESQIQHKTKFLDVLGTITEVTALKTVHIEGQLSPTIIRDVMIEDLSRKTLKITLWAK 144
Query: 624 EAETFDASN-------KPVIAVKAARVSEF-QGNLLLMREI 656
A +F N KP++A+ + +F +G LL +I
Sbjct: 145 RATSFTIQNVYDPVSKKPILALFVGCLPKFYKGKYLLQLQI 185
Score = 45.8 bits (107), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 10/139 (7%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI-AEISPDEN-IDVL 63
A + I+ D + FT T + P + P Y P I ++I +DVL
Sbjct: 43 AKTAYKPIDGDKMIQFTIYTIIKP-GSNPPPTFPLYIYQLTPFDEIESQIQHKTKFLDVL 101
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN-------K 116
G + L +V + + RD+ + D S+ ++ +TLW K A +F N K
Sbjct: 102 GTITEVTALKTVHIEGQLSPTIIRDVMIEDLSRKTLKITLWAKRATSFTIQNVYDPVSKK 161
Query: 117 PVIAVKAARVSEFQGGKTL 135
P++A+ + +F GK L
Sbjct: 162 PILALFVGCLPKFYKGKYL 180
>gi|380741029|tpe|CCE69663.1| TPA: replication factor A [Pyrococcus abyssi GE5]
Length = 358
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 122/285 (42%), Gaps = 46/285 (16%)
Query: 46 VPLKTIAEISPD---ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 102
V L I+E+ P ++V+G + T K + I D +A V
Sbjct: 61 VSLMRISELYPGMDPREVNVVGRVLKKYPPREYTRKDGSVGRVASLIIYDDSGRARVV-- 118
Query: 103 LWGKEAETFDASNK----PVIAVKAARVSE-FQGGKTLSLSMSSVLSLNPDIPECHKLQG 157
LW +A+ + NK VI V A+V E G L ++ + + LNPD P +
Sbjct: 119 LW--DAKVSEYYNKIEVGDVIKVLDAQVKESLSGLPELHINFRARIILNPDDPRVEMIPP 176
Query: 158 WFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGII-QVFRG 216
+ T ++I+D + GD+ + VRG I +V+R
Sbjct: 177 LEEVRVAT--------------------YTRKKIKDIE--AGDR--FVEVRGTIAKVYR- 211
Query: 217 SNTTYKACPSQDCNKKV-IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLF 275
TY ACP +C KKV D+ G++ C + + E IL + D T + VTLF
Sbjct: 212 -VLTYDACP--ECKKKVDYDEGLGVWICPE-HGEVQPIKM-TILDFGLDDGTGYIRVTLF 266
Query: 276 QNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAKLEHYN 320
++AE +LGV+ +E+ E ++ + L T+ R A+ E YN
Sbjct: 267 GDDAEELLGVSPEEIAEKIKELE--ESGLTTKEAARKLAEDEFYN 309
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 12/124 (9%)
Query: 664 GDKADYCSVRGII-QVFRGSNTTYKACPSQDCNKKV-IDQNNGMYRCEKCNKEFNTFTYR 721
GD+ + VRG I +V+R TY ACP +C KKV D+ G++ C + + E
Sbjct: 196 GDR--FVEVRGTIAKVYR--VLTYDACP--ECKKKVDYDEGLGVWICPE-HGEVQPIKM- 247
Query: 722 LILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAKL 781
IL + D T + VTLF ++AE +LGV+ +E+ E ++ + L T+ R A+
Sbjct: 248 TILDFGLDDGTGYIRVTLFGDDAEELLGVSPEEIAEKIKELE--ESGLTTKEAARKLAED 305
Query: 782 EHYN 785
E YN
Sbjct: 306 EFYN 309
>gi|348667623|gb|EGZ07448.1| hypothetical protein PHYSODRAFT_306620 [Phytophthora sojae]
Length = 356
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 73/185 (39%), Gaps = 51/185 (27%)
Query: 443 HPIVSLSPYQN-KWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECN 501
HPI +SP W + AR+ +P+R+W+NA G G + + L+D + EI A+
Sbjct: 4 HPIRDISPVLGVPWEVVARIAFLSPVRQWSNANGRGHVMNAKLVD-AEEILAS------- 55
Query: 502 RFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC 561
S ++ P +D+ ++ V Y
Sbjct: 56 ---------------------------------------SASLTPVEDDD--SIEHVYYA 74
Query: 562 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
F ++ A D+L + +D L SV + + +KR++ L D S + TLW
Sbjct: 75 FTTIRDFAHADVHAQADILPMIMDVGVLDSVVDRKD-GVQVKRELKLTDSSNVEIVCTLW 133
Query: 622 GKEAE 626
+ AE
Sbjct: 134 NEFAE 138
Score = 39.3 bits (90), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 16 DYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSV 75
D E S ++ P +D+ ++ V Y F ++ A D+L + +D L SV
Sbjct: 48 DAEEILASSASLTPVEDDD--SIEHVYYAFTTIRDFAHADVHAQADILPMIMDVGVLDSV 105
Query: 76 TGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE 109
+ + +KR++ L D S + TLW + AE
Sbjct: 106 VDRKD-GVQVKRELKLTDSSNVEIVCTLWNEFAE 138
Score = 39.3 bits (90), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 74 SVTGKT-NQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKP--VIAVKAARVSEFQ 130
SV G T + + KR + L D S V TLW E + S +P V++++ A+V +
Sbjct: 181 SVIGVTKDGRILRKRTVALQDMSDTDVECTLWLAEVDKV-TSEQPESVLSLENAKVVIY- 238
Query: 131 GGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTN 164
G ++ S+ ++ ++P IP C +L W++T N
Sbjct: 239 GDCRVATSVKTLDLVDPAIPACFELVRWYTTPPN 272
>gi|414871008|tpg|DAA49565.1| TPA: hypothetical protein ZEAMMB73_072047 [Zea mays]
Length = 259
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 29/228 (12%)
Query: 448 LSPYQNKWTIKARVTNKTPIREW--NNARGSGKLFSIDLL-------DESGEIRATMFND 498
L+ Y+ I+ V+ R+W + A +G L ID++ EI A + +
Sbjct: 15 LTTYKKHAIIQVHVS-----RKWSFHGATENGPLQHIDMVLSDCKGNSMYAEIPANLAEE 69
Query: 499 ECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV 558
+ +IE +++Y IS + A + I+ D + FT T + P + + P
Sbjct: 70 KGA----LIETNQIYDISRFRVTAAKTAYKPIDGDKMIQFTIYTIIKPAS-NPPPTFPLY 124
Query: 559 KYCFVPLKTI-AEISPDEN-IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
Y P I ++I +DVLG + L V + + RD+ + D S+ +
Sbjct: 125 IYQLTPFDEIESQIQHKTKFLDVLGTITEVTALKIVHIEGQLSPTIIRDVMIEDLSRKTH 184
Query: 617 TMTLWGKEAETFDASN-------KPVIAVKAARVSEF-QGNLLLMREI 656
+TLW K A +F N KP++A+ + +F +G LL +I
Sbjct: 185 KITLWAKRATSFTIQNVYDPISKKPILALFVGCLPKFYKGKYLLQLQI 232
Score = 43.9 bits (102), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 10/139 (7%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI-AEISPDEN-IDVL 63
A + I+ D + FT T + P + + P Y P I ++I +DVL
Sbjct: 90 AKTAYKPIDGDKMIQFTIYTIIKPAS-NPPPTFPLYIYQLTPFDEIESQIQHKTKFLDVL 148
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN-------K 116
G + L V + + RD+ + D S+ + +TLW K A +F N K
Sbjct: 149 GTITEVTALKIVHIEGQLSPTIIRDVMIEDLSRKTHKITLWAKRATSFTIQNVYDPISKK 208
Query: 117 PVIAVKAARVSEFQGGKTL 135
P++A+ + +F GK L
Sbjct: 209 PILALFVGCLPKFYKGKYL 227
>gi|297736059|emb|CBI24097.3| unnamed protein product [Vitis vinifera]
Length = 115
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 58 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ETFD 112
E + V GV + + K++ KRDIT D+++ +V ++LW A E D
Sbjct: 9 ERVYVSGVVQSVSPTMRIQRKSHNDIVPKRDITFADKTKKTVVVSLWNDHATNVGQELLD 68
Query: 113 ASNK-PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKL 155
++K P++A+K+ +V +FQ +LS S VL +NPD E K+
Sbjct: 69 NADKFPIVAIKSLKVGDFQVVSLSTLSESIVL-VNPDTREYKKV 111
Score = 43.9 bits (102), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 575 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ETFD 629
E + V GV + + K++ KRDIT D+++ +V ++LW A E D
Sbjct: 9 ERVYVSGVVQSVSPTMRIQRKSHNDIVPKRDITFADKTKKTVVVSLWNDHATNVGQELLD 68
Query: 630 ASNK-PVIAVKAARVSEFQ 647
++K P++A+K+ +V +FQ
Sbjct: 69 NADKFPIVAIKSLKVGDFQ 87
>gi|392889706|ref|NP_494734.3| Protein R03H10.7 [Caenorhabditis elegans]
gi|351062334|emb|CCD70304.1| Protein R03H10.7 [Caenorhabditis elegans]
Length = 359
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 96/215 (44%), Gaps = 18/215 (8%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNR 502
PI +L N + I RVT + + K F+ ++ D +G+ I + + E +
Sbjct: 116 PIENLKESVNYFKIHGRVT----LMDTRPPHHYQKRFNFEITDFNGDTIACSASSPEADV 171
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F+ + K++ YY++ +K ++ ++ DY++ + T + P + +P
Sbjct: 172 FYQNLVKEQSYYLAGGHIKKGHEIYNQTGIDYQIDLNNFTIMEPA--PTLLTLPKFNIQR 229
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
V L +A + + IDVL VCI + T K KR I ++D S++ + T WG
Sbjct: 230 VFLSDVANVK--KPIDVL-VCIKEFKDVENYTPTENKPPHKRHIQVIDDSKSEIRATFWG 286
Query: 623 KEA-----ETFDASNKPVIAVKAARVSEFQGNLLL 652
A E F NK V+A K +E G L L
Sbjct: 287 YNAVDAIREEF--LNK-VVAFKGVIPTEGNGQLFL 318
Score = 43.5 bits (101), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 13/149 (8%)
Query: 16 DYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSV 75
DY++ + T + P + +P V L +A + + IDVL VCI +
Sbjct: 202 DYQIDLNNFTIMEPA--PTLLTLPKFNIQRVFLSDVANVK--KPIDVL-VCIKEFKDVEN 256
Query: 76 TGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ETFDASNKPVIAVKAARVSEFQ 130
T K KR I ++D S++ + T WG A E F NK V+A K +E
Sbjct: 257 YTPTENKPPHKRHIQVIDDSKSEIRATFWGYNAVDAIREEF--LNK-VVAFKGVIPTEGN 313
Query: 131 GGKTLSLSMSSVLSLNPDIPECHKLQGWF 159
G LS++ + + + P++ L+ WF
Sbjct: 314 GQLFLSITPGTRIVIQPEVDGAAYLEAWF 342
>gi|226506010|ref|NP_001152059.1| retrotransposon protein [Zea mays]
gi|195652219|gb|ACG45577.1| retrotransposon protein [Zea mays]
Length = 525
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 36/230 (15%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREW--NNARGSGKLFSIDLL--DESG-----EIRAT 494
P+ L P I+ RV IR+W A G L I+L+ DE G EI A
Sbjct: 5 PVAELHPQSTNVVIRVRV-----IRKWEFRGATNDGPLQHINLVLADEQGTPIHAEIAAA 59
Query: 495 MFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN 554
+ D+ + +IE +KVY + + P+ F ++N++ + FT T +D
Sbjct: 60 LAVDKGS----LIEIEKVYELKRFRVTPSRNYFKPVDNNFMIQFTLYTQA-KVVKDPPQV 114
Query: 555 MPSVKYCFVPLKTIAEISPDEN--IDVLGVC--IDAAELSSVTGKTNQKTYMKRDITLVD 610
P Y + I + + IDVLG+ I+ L T + RDI + +
Sbjct: 115 FPRYIYKLTCFENIEDNIDNRTYLIDVLGMLTQINPPHLIGYNNST-----IIRDIFIKN 169
Query: 611 QSQASVTMTLWGKEAETFD-------ASNKPVIAVKAARVSE-FQGNLLL 652
S S+ +TLWG +A F ++N+P++ + +++ F+G L
Sbjct: 170 TSDMSLKITLWGNQASGFSINDVYSQSNNQPIVILLVGFLAKRFKGQPYL 219
Score = 46.6 bits (109), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 116/302 (38%), Gaps = 42/302 (13%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN--IDV 62
P+ F ++N++ + FT T +D P Y + I + + IDV
Sbjct: 83 PSRNYFKPVDNNFMIQFTLYTQA-KVVKDPPQVFPRYIYKLTCFENIEDNIDNRTYLIDV 141
Query: 63 LGVC--IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD-------A 113
LG+ I+ L T + RDI + + S S+ +TLWG +A F +
Sbjct: 142 LGMLTQINPPHLIGYNNST-----IIRDIFIKNTSDMSLKITLWGNQASGFSINDVYSQS 196
Query: 114 SNKPVIAVKAARVSE-FQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQ 172
+N+P++ + +++ F+G LS + +S NP IPE Q +++ N + +
Sbjct: 197 NNQPIVILLVGFLAKRFKGQPYLSSTTASSWYFNPGIPEA---QTYYNRLQNNDLQLI-- 251
Query: 173 RTGGMGGGAAGNLLL----------MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYK 222
A +LL + E+ D M Y I ++ S Y
Sbjct: 252 ----QPTAAEEEILLSQPPNLEHKTVEELLDIDPDMFPPEGYRCTVTISRIVENSKWWYP 307
Query: 223 ACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESI 282
+C C+K + G Y C C F Y+L + D T F + A I
Sbjct: 308 SC--SRCHKSSSQTSTG-YHCTSCGCTDINFRYKLSF--IATDGTCEAEFFCFDSIARKI 362
Query: 283 LG 284
+G
Sbjct: 363 VG 364
>gi|402223238|gb|EJU03303.1| hypothetical protein DACRYDRAFT_106464 [Dacryopinax sp. DJM-731
SS1]
Length = 817
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 84/193 (43%), Gaps = 21/193 (10%)
Query: 60 IDVLGVCIDAAELSSVT-----------GKTNQKTYMKR--DITLVDQSQASVTMTLWGK 106
++VLGV + +++S + G T +R ++ LVD+S V +TLW +
Sbjct: 488 VNVLGVVLHVGQVASFSKKKCVAGEEAEGDDRDDTAERRRLEVQLVDRSLFVVCLTLWDQ 547
Query: 107 EAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST-QTNT 165
+A+ F V+ +K V GG +L+ + L P+I +L+ W+S +
Sbjct: 548 KADDFKVKRGDVLLLKKVDVVN-HGGVSLNAFKFTKLDFEPNISGVTELKDWYSALPEDP 606
Query: 166 RFEPVSQRTGGMGGGAAG-----NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT 220
+ VS G G + L ++++ + LG G + D + I F T
Sbjct: 607 ALKHVSSGYSASAGLRDGIVPRSSPLSIKDVLESNLGHGARVDTFHLEEAITGF-DCQTL 665
Query: 221 YKACPSQDCNKKV 233
Y+ C DCN+ +
Sbjct: 666 YEGCRHPDCNRSL 678
>gi|321465732|gb|EFX76731.1| hypothetical protein DAPPUDRAFT_321917 [Daphnia pulex]
Length = 140
Score = 51.6 bits (122), Expect = 0.002, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 16/146 (10%)
Query: 19 MSFTHSTTV-IPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTG 77
M+F+ + V + C E+E+ P K+ F L E + I+V+G + E+ +T
Sbjct: 1 MAFSPTLWVRVTCLEEEI---PFYKHHFTALDKCQE--SGKIIEVIGGLYEIGEI--ITI 53
Query: 78 KTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF----DASNKPVIAVKAARVSEF--QG 131
KT K KR+I ++DQS VT+T+W AE F + ++A ++S F +
Sbjct: 54 KT-AKASTKREIKIIDQSYNKVTITMWNTIAEKFIIAVEKLEDVIVAFAGIKISTFSRED 112
Query: 132 GKTLSLSMSSVL-SLNPDIPECHKLQ 156
G+ S L S+NPDIPE +L+
Sbjct: 113 GEIFLDSFDDTLVSINPDIPESAELK 138
Score = 40.0 bits (92), Expect = 4.9, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 13/116 (11%)
Query: 536 MSFTHSTTV-IPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTG 594
M+F+ + V + C E+E+ P K+ F L E + I+V+G + E+ +T
Sbjct: 1 MAFSPTLWVRVTCLEEEI---PFYKHHFTALDKCQE--SGKIIEVIGGLYEIGEI--ITI 53
Query: 595 KTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF----DASNKPVIAVKAARVSEF 646
KT K KR+I ++DQS VT+T+W AE F + ++A ++S F
Sbjct: 54 KT-AKASTKREIKIIDQSYNKVTITMWNTIAEKFIIAVEKLEDVIVAFAGIKISTF 108
>gi|402223359|gb|EJU03423.1| hypothetical protein DACRYDRAFT_105585 [Dacryopinax sp. DJM-731
SS1]
Length = 470
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/256 (19%), Positives = 101/256 (39%), Gaps = 18/256 (7%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A + F + + +++ ++ ++ + P + F L TI + E IDVL V
Sbjct: 210 AAEGFRQVPHKFQLILEEHAVIMEIHDPSI---PRIFLTFRCLNTIERLRVYEIIDVLAV 266
Query: 66 CIDAAEL----SSVTGKTNQK---TYM-KRDITLVDQSQASVTMTLWGKEAETFDASNKP 117
+ + + TG+ Q TY RD+ LVD S+ ++ + ++ F +
Sbjct: 267 VVCVGRVMKGGPAKTGRVEQGLQVTYTSHRDVWLVDNSKVAIRLCMFDLFQNIFKQAENK 326
Query: 118 VIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGM 177
VI +K+ V + + P +L W+ + ++
Sbjct: 327 VIGIKSVVVDMLDRPCLKTQKGCTQFVFQDGNPGYERLMEWYKDADPKEWRTITGSFSAD 386
Query: 178 GGGAA-----GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKK 232
G + ++++ QD +LG+ K + + ++ V + YK C +DCNKK
Sbjct: 387 GFPKSDITIPNETIMIKVAQDAKLGLTSKKTFKVITKVL-VKNYKDYLYKGCLYEDCNKK 445
Query: 233 VIDQNNG-MYRCEKCN 247
Q G ++ C C+
Sbjct: 446 TPTQKIGNVFVCPMCD 461
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 21/169 (12%)
Query: 484 LLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCT-LKPANKKFSSINNDYEMSFTHST 542
LLD + EI F + R H IE CT ++ A + F + + +++
Sbjct: 179 LLDLTAEILIIAFGAQTFRIHIQIE---------CTHVQEAAEGFRQVPHKFQLILEEHA 229
Query: 543 TVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAEL----SSVTGKTNQ 598
++ ++ + P + F L TI + E IDVL V + + + TG+ Q
Sbjct: 230 VIMEIHDPSI---PRIFLTFRCLNTIERLRVYEIIDVLAVVVCVGRVMKGGPAKTGRVEQ 286
Query: 599 K---TYM-KRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARV 643
TY RD+ LVD S+ ++ + ++ F + VI +K+ V
Sbjct: 287 GLQVTYTSHRDVWLVDNSKVAIRLCMFDLFQNIFKQAENKVIGIKSVVV 335
>gi|218200560|gb|EEC82987.1| hypothetical protein OsI_28022 [Oryza sativa Indica Group]
Length = 705
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 94/194 (48%), Gaps = 16/194 (8%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNAR-GSGKLFSIDLL--DESGE-IRATMFNDEC 500
I L+ W+IKA++ +R W++ + ++ S D+L DE GE I AT++ +
Sbjct: 6 ISELTTKGQTWSIKAKI-----LRMWDSVNFATDEIMSFDMLLMDEEGETIHATIWKNLI 60
Query: 501 NRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKY 560
+ F MI ++ +Y SN ++ + K + ++ D +++F ++T V + +
Sbjct: 61 DNFRPMISENSIYAFSNFKVQESTK-YCPVDKDLKITFMYNTKVKEM-KGASNKFKEYYF 118
Query: 561 CFVPLKTIAEISPDENI--DVLGVCIDAAELSS---VTGKTNQKTYMKRDITLVDQSQAS 615
F +T+ + + I DV+G+ + S + TN + R+I L+ A
Sbjct: 119 EFATRETLVDRVNKDKILSDVIGLLTKIKPIESRMIMKNSTNPRPKDIREIELLLLDGAK 178
Query: 616 VTMTLWGKEAETFD 629
+ +TLWG+ A + +
Sbjct: 179 IRVTLWGQLAHSLN 192
Score = 47.8 bits (112), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 109/251 (43%), Gaps = 20/251 (7%)
Query: 9 KFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI--DVLGVC 66
K+ ++ D +++F ++T V + + F +T+ + + I DV+G+
Sbjct: 85 KYCPVDKDLKITFMYNTKVKEM-KGASNKFKEYYFEFATRETLVDRVNKDKILSDVIGLL 143
Query: 67 IDAAELSS---VTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS---NKPVIA 120
+ S + TN + R+I L+ A + +TLWG+ A + + N V+
Sbjct: 144 TKIKPIESRMIMKNSTNPRPKDIREIELLLLDGAKIRVTLWGQLAHSLNEDVIGNHTVVV 203
Query: 121 VKAARVSEFQGGKTLSLSMSSVLSLNPD--IPECHKLQGWFSTQTNT-RFEPVSQRTGG- 176
V + V EF G LSL SS L D IPE K+ S + N + V + T G
Sbjct: 204 VTSTTVQEFNG---LSLRSSSATRLYTDINIPETWKIISRHSDEQNLPKLMEVDKSTQGT 260
Query: 177 MGGGAAGNLLLMREIQDQQLGMGDKADY-CSVRGIIQVFRGSNTTYKACPSQDCNKKVID 235
+ N ++EI + D+ C+ + I + Y +C DCNKKV+
Sbjct: 261 LEEQMFYNRKTLQEITNMGHDDTKSQDFICTTKATIDHLQDVTWWYMSC--NDCNKKVVK 318
Query: 236 QNNGMYRCEKC 246
+ + Y CEKC
Sbjct: 319 KIDKYY-CEKC 328
>gi|402225049|gb|EJU05111.1| hypothetical protein DACRYDRAFT_98791 [Dacryopinax sp. DJM-731 SS1]
Length = 504
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/261 (19%), Positives = 94/261 (36%), Gaps = 40/261 (15%)
Query: 46 VPLKTIAEISPDENIDV--------LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA 97
VP IA++ D+ D+ G+C + S + K + TY R I +VDQS
Sbjct: 200 VPFAKIADMGSDDICDIHAIVVTVGAGICCKPSH-SELLAK--EVTYF-RKIHIVDQSSV 255
Query: 98 SVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQG 157
+ + W + E F +++ + G ++ + + N D P+ LQ
Sbjct: 256 MLCLCTWQELGEVFKNHEGEAVSINNLQWDYHDGPSLVTAGKCTHIHFNDDDPDHQALQL 315
Query: 158 WFSTQTNTRFEPVSQRTGGMGGGAAG-----NLLLMREIQDQQLGMGDKADYCSVRGIIQ 212
W+ T++ + T G + L ++E+ +G D ++ +
Sbjct: 316 WYEENLETQWTLLLGHTTAAGAQLTNTAPPRDKLCIKEVL-SCVGKKLDIDTFALVATCK 374
Query: 213 VFRGSNTTYKACPSQDCNK--KVIDQNNGMYRCEKCNKEFN------------------- 251
+ + Y AC + C+K K + ++ C CN F
Sbjct: 375 ILLLKDIGYYACMDKHCHKAAKCVAGTLHLWNCPHCNTRFTKPHSIYCLQLHLDNGTREC 434
Query: 252 -TFTYRLILPVMIGDWTNSVW 271
T+ I + GDW +W
Sbjct: 435 VVTTFDFIRCQLFGDWAVMLW 455
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 84/191 (43%), Gaps = 22/191 (11%)
Query: 459 ARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNC 518
AR++ K + +N G G++ ++ D G+I A FN + +E +VY I N
Sbjct: 100 ARLSGKDTVHAYNTQNGKGRVHNLTFHDSMGKIGAVAFNSA-TEVTNSLESGQVYSICNA 158
Query: 519 TLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEV---GNMPSVKYCFVPLKTIAEISPDE 575
T+ A ++ + ++++ + +T E E+ ++P VP IA++ D+
Sbjct: 159 TVCIAKAAYNKTLSLFQLTISMNT------EFELVQNFDLPIHYLDIVPFAKIADMGSDD 212
Query: 576 NIDV--------LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET 627
D+ G+C + S + K + TY R I +VDQS + + W + E
Sbjct: 213 ICDIHAIVVTVGAGICCKPSH-SELLAK--EVTYF-RKIHIVDQSSVMLCLCTWQELGEV 268
Query: 628 FDASNKPVIAV 638
F +++
Sbjct: 269 FKNHEGEAVSI 279
>gi|242041189|ref|XP_002467989.1| hypothetical protein SORBIDRAFT_01g037705 [Sorghum bicolor]
gi|241921843|gb|EER94987.1| hypothetical protein SORBIDRAFT_01g037705 [Sorghum bicolor]
Length = 122
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 640 AARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGS-NTTYKACPSQDCNKKV 698
A R S + + L D +G +K + S+ II + + Y+AC + C KV
Sbjct: 3 ATRKSMYSDRIFLSHITSDPAMGQ-EKPVFFSLNAIISHIKPEQHMWYRAC--KTCCNKV 59
Query: 699 IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 755
+ Y E+CNK + + R I+ + + D WV++F AE I+G +A E+
Sbjct: 60 TEAFGSGYWSERCNKNASECSLRYIMVIKVSDPNGEAWVSVFNEHAEKIIGYSADEL 116
Score = 47.4 bits (111), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGS-NTTYKACPSQDCNKKVIDQNNGMYRC 243
+ L D +G +K + S+ II + + Y+AC + C KV + Y
Sbjct: 13 IFLSHITSDPAMGQ-EKPVFFSLNAIISHIKPEQHMWYRAC--KTCCNKVTEAFGSGYWS 69
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 290
E+CNK + + R I+ + + D WV++F AE I+G +A E+
Sbjct: 70 ERCNKNASECSLRYIMVIKVSDPNGEAWVSVFNEHAEKIIGYSADEL 116
>gi|148643392|ref|YP_001273905.1| replication factor A [Methanobrevibacter smithii ATCC 35061]
gi|148552409|gb|ABQ87537.1| ssDNA-binding protein [Methanobrevibacter smithii ATCC 35061]
Length = 793
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 75/326 (23%), Positives = 133/326 (40%), Gaps = 58/326 (17%)
Query: 477 GKLFSIDLLDE-------SGEIRATMFNDECNR----FHDMIEKDKVYYISNCTLKPANK 525
G++F+I ++E G R+ F+D R F D +K K Y + K N
Sbjct: 427 GRMFAIGEINEFQRDDGSVGYARSAKFSDGEGRVGLTFWD--QKAKQEYKTGGAYKIENA 484
Query: 526 KFSSINNDYEMSFTHSTTV--IPCNEDEVGNMPSVKYCFVPL---KTIAEISPD-ENIDV 579
K + E++ S + +P + D+ +PS K L K+IA++ D E I V
Sbjct: 485 KVRLGMYEVELNIGGSARIMELPEDSDQARFLPSFKTIETMLYSHKSIADVEEDDEGIIV 544
Query: 580 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEAETFDA--SNK 633
G I+++++ K Y+K + + D S S+ +TLW KE DA
Sbjct: 545 TGRIIESSDVREFDRTDGSKGYVKS-LEIADNS-GSINVTLWNENAKKEWNVGDAIKFQD 602
Query: 634 PVIAVKAARV------------------------SEFQGNLLLMREIQDQQLGMGDKADY 669
P I+ + + E + ++ + + I+ + D
Sbjct: 603 PQISFRNDSLEINVSRSTSILEPDESEIDDLPTYDELKESIYVPKTIE----ALEDDDRN 658
Query: 670 CSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIG 729
+ G ++ G+ CPS C V DQ++ + C C + + Y L++P +
Sbjct: 659 VRITGTLKEVFGNKILITKCPS--CGNTV-DQSSDDFVCSFCGEPIDEPRYLLMVPARLE 715
Query: 730 DWTNSVWVTLFQNEAESILGVTAQEV 755
D T + +T F N AE +L + +E+
Sbjct: 716 DDTGEISITFFDNLAEELLDMKKEEI 741
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 114/267 (42%), Gaps = 35/267 (13%)
Query: 28 IPCNEDEVGNMPSVKYCFVPL---KTIAEISPD-ENIDVLGVCIDAAELSSVTGKTNQKT 83
+P + D+ +PS K L K+IA++ D E I V G I+++++ K
Sbjct: 506 LPEDSDQARFLPSFKTIETMLYSHKSIADVEEDDEGIIVTGRIIESSDVREFDRTDGSKG 565
Query: 84 YMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVL 143
Y+K + + D S S+ +TLW + A+ + + I + ++S +++S S+ +
Sbjct: 566 YVKS-LEIADNS-GSINVTLWNENAKK-EWNVGDAIKFQDPQISFRNDSLEINVSRSTSI 622
Query: 144 SLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKAD 203
L PD E L + + + + + + I+ + D
Sbjct: 623 -LEPDESEIDDLPTYDELKES--------------------IYVPKTIE----ALEDDDR 657
Query: 204 YCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMI 263
+ G ++ G+ CPS C V DQ++ + C C + + Y L++P +
Sbjct: 658 NVRITGTLKEVFGNKILITKCPS--CGNTV-DQSSDDFVCSFCGEPIDEPRYLLMVPARL 714
Query: 264 GDWTNSVWVTLFQNEAESILGVTAQEV 290
D T + +T F N AE +L + +E+
Sbjct: 715 EDDTGEISITFFDNLAEELLDMKKEEI 741
>gi|222445635|ref|ZP_03608150.1| hypothetical protein METSMIALI_01275 [Methanobrevibacter smithii
DSM 2375]
gi|222435200|gb|EEE42365.1| nucleic acid-binding domain protein [Methanobrevibacter smithii DSM
2375]
Length = 793
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 133/326 (40%), Gaps = 58/326 (17%)
Query: 477 GKLFSIDLLDE-------SGEIRATMFNDECNR----FHDMIEKDKVYYISNCTLKPANK 525
G++F+I ++E G R+ F+D R F D +K K Y + K N
Sbjct: 427 GRMFAIGEINEFQRDDGSVGYARSAKFSDGEGRVGLTFWD--QKAKQEYKTGGAYKIENA 484
Query: 526 KFSSINNDYEMSFTHSTTVI--PCNEDEVGNMPSVKYCFVPL---KTIAEISPD-ENIDV 579
K + E++ S VI P + D+ +PS K L K+IA++ D E I V
Sbjct: 485 KVRLGMYEVELNIGGSARVIELPEDSDQARFLPSFKTIETMLYSHKSIADVEEDDEGIIV 544
Query: 580 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEAETFDA--SNK 633
G I+++++ K Y+K + + D S S+ +TLW KE DA
Sbjct: 545 TGRIIESSDVREFDRTDGSKGYVKS-LEIADNS-GSINVTLWNENAKKEWNVGDAIKFQD 602
Query: 634 PVIAVKAARV------------------------SEFQGNLLLMREIQDQQLGMGDKADY 669
P I+ + + E + ++ + + I+ + D
Sbjct: 603 PQISFRNDSLEINVSRSTSILEPDESEIDDLPTYDELKESIYVPKTIE----ALEDDDRN 658
Query: 670 CSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIG 729
+ G ++ G+ CPS C V DQ++ + C C + + Y L++P +
Sbjct: 659 VRITGTLKEVFGNKILITKCPS--CGNTV-DQSSDDFVCSFCGEPIDEPRYLLMVPARLE 715
Query: 730 DWTNSVWVTLFQNEAESILGVTAQEV 755
D T + +T F N AE +L + +++
Sbjct: 716 DDTGEISITFFDNLAEELLDMKKEDI 741
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 119/279 (42%), Gaps = 37/279 (13%)
Query: 18 EMSFTHSTTVI--PCNEDEVGNMPSVKYCFVPL---KTIAEISPD-ENIDVLGVCIDAAE 71
E++ S VI P + D+ +PS K L K+IA++ D E I V G I++++
Sbjct: 494 ELNIGGSARVIELPEDSDQARFLPSFKTIETMLYSHKSIADVEEDDEGIIVTGRIIESSD 553
Query: 72 LSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG 131
+ K Y+K + + D S S+ +TLW + A+ + + I + ++S
Sbjct: 554 VREFDRTDGSKGYVKS-LEIADNS-GSINVTLWNENAKK-EWNVGDAIKFQDPQISFRND 610
Query: 132 GKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREI 191
+++S S+ + L PD E L + + + + + + I
Sbjct: 611 SLEINVSRSTSI-LEPDESEIDDLPTYDELKES--------------------IYVPKTI 649
Query: 192 QDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFN 251
+ + D + G ++ G+ CPS C V DQ++ + C C + +
Sbjct: 650 E----ALEDDDRNVRITGTLKEVFGNKILITKCPS--CGNTV-DQSSDDFVCSFCGEPID 702
Query: 252 TFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 290
Y L++P + D T + +T F N AE +L + +++
Sbjct: 703 EPRYLLMVPARLEDDTGEISITFFDNLAEELLDMKKEDI 741
>gi|115473669|ref|NP_001060433.1| Os07g0642100 [Oryza sativa Japonica Group]
gi|113611969|dbj|BAF22347.1| Os07g0642100, partial [Oryza sativa Japonica Group]
Length = 145
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 12/142 (8%)
Query: 10 FSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN---IDVLGVC 66
+ + N +SFT TT+ C D + P++ + P + + + D+N +D++GV
Sbjct: 2 YRPVTNPLMISFTKWTTLEEC-IDASDDFPAITFSLTPFQDVPSLV-DKNAFYVDIMGVI 59
Query: 67 IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS-------NKPVI 119
+ ++ K+ +KR + + D S +++ +TLWG A F+A KP +
Sbjct: 60 TEIGATDTLRPKSRNTETLKRTMQIWDASNSTLPITLWGNTAAAFNAEELYNAGQKKPQV 119
Query: 120 AVKAARVSEFQGGKTLSLSMSS 141
V V + G L+L+ SS
Sbjct: 120 IVFVGTVVKNYKGIGLTLNGSS 141
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 527 FSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN---IDVLGVC 583
+ + N +SFT TT+ C D + P++ + P + + + D+N +D++GV
Sbjct: 2 YRPVTNPLMISFTKWTTLEEC-IDASDDFPAITFSLTPFQDVPSLV-DKNAFYVDIMGVI 59
Query: 584 IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARV 643
+ ++ K+ +KR + + D S +++ +TLWG A F+A K +V
Sbjct: 60 TEIGATDTLRPKSRNTETLKRTMQIWDASNSTLPITLWGNTAAAFNAEELYNAGQKKPQV 119
Query: 644 SEFQGNLL 651
F G ++
Sbjct: 120 IVFVGTVV 127
>gi|357450467|ref|XP_003595510.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
gi|355484558|gb|AES65761.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
Length = 549
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 81/377 (21%), Positives = 143/377 (37%), Gaps = 72/377 (19%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNRF 503
I +SP + W I+ RV +R+ + L + L+D G+ I A++ ++
Sbjct: 8 ISDISPSKENWNIRVRVVRLWFVRDMKKDQLPYSLEMV-LMDNKGDRINASVRRTLIYKY 66
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+ +D+V+ I N ++ + + + Y+++F + T + C++ V P+ Y
Sbjct: 67 EKELREDRVFSIGNFSVASNVGSYRTARHPYKINFQYGTKIKQCDDKFV---PADIYVIG 123
Query: 564 PLKTI--AEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
+ I +E D IDV+G+ S T +Q + ++ D +TL+
Sbjct: 124 DSREIFQSEYDTDYLIDVMGMLKAVGVEKSYTRNGSQSKMIPIEL---DYDGFRFKVTLF 180
Query: 622 G---KEAETFDASNKP---VIAVKAARVSEFQGNLLLMREIQDQQL-------------- 661
G E F AS + V+AV ++ FQG + I ++
Sbjct: 181 GPYVDELNAFLASGETENVVVAVLLTKIKIFQGQATIQNTINATKVLFNPTFTAALLLKK 240
Query: 662 GMGDKADYCSVRGIIQVFRGSNTT----------------YKACPSQDC----------- 694
M + D S GI ++ S + K C + C
Sbjct: 241 RMVENDDSPS-PGISKITEASKVSVEEDFLNLSPMTTVEGLKDCAEEKCFAVFGTVNVIV 299
Query: 695 -------------NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQ 741
NKKV + MY C KCNK T R ++ + + D T+S LF
Sbjct: 300 DDSDWWYTSCVVCNKKVY-PDEKMYFCSKCNKHVLNVTPRYMIKMRVVDHTDSATFVLFD 358
Query: 742 NEAESILGVTAQEVGES 758
+A + T ++ ES
Sbjct: 359 RDAAELFKKTCADMIES 375
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 128/297 (43%), Gaps = 24/297 (8%)
Query: 10 FSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI--AEISPDENIDVLGVCI 67
+ + + Y+++F + T + C++ V P+ Y + I +E D IDV+G+
Sbjct: 90 YRTARHPYKINFQYGTKIKQCDDKFV---PADIYVIGDSREIFQSEYDTDYLIDVMGMLK 146
Query: 68 DAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG---KEAETFDASNKP---VIAV 121
S T +Q + ++ D +TL+G E F AS + V+AV
Sbjct: 147 AVGVEKSYTRNGSQSKMIPIEL---DYDGFRFKVTLFGPYVDELNAFLASGETENVVVAV 203
Query: 122 KAARVSEFQGGKTL--SLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGG 179
++ FQG T+ +++ + VL NP L+ ++ +S+ T
Sbjct: 204 LLTKIKIFQGQATIQNTINATKVL-FNPTFTAALLLKKRMVENDDSPSPGISKITEASKV 262
Query: 180 GAAGNLLLMREIQDQQLGMGDKAD-YC-SVRGIIQVF-RGSNTTYKACPSQDCNKKVIDQ 236
+ L + + + G+ D A+ C +V G + V S+ Y +C CNKKV
Sbjct: 263 SVEEDFLNLSPMTTVE-GLKDCAEEKCFAVFGTVNVIVDDSDWWYTSCVV--CNKKVY-P 318
Query: 237 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGES 293
+ MY C KCNK T R ++ + + D T+S LF +A + T ++ ES
Sbjct: 319 DEKMYFCSKCNKHVLNVTPRYMIKMRVVDHTDSATFVLFDRDAAELFKKTCADMIES 375
>gi|242051188|ref|XP_002463338.1| hypothetical protein SORBIDRAFT_02g042013 [Sorghum bicolor]
gi|241926715|gb|EER99859.1| hypothetical protein SORBIDRAFT_02g042013 [Sorghum bicolor]
Length = 520
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 95/232 (40%), Gaps = 24/232 (10%)
Query: 448 LSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDL--LDESG-EIRATMFNDECNRFH 504
+ P Q WTI ++ + E+ G + +DL +D+ G + + D
Sbjct: 12 IRPGQFHWTICVSISR---MWEFRGKSDDGDIKHLDLVIIDKKGTSMYVEIPPDSIPILK 68
Query: 505 DMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVP 564
+++ K+ + ++ A ++ + N Y + + T+I E E P V Y P
Sbjct: 69 PQLKEGKIVVMKKFVVEQAKPEYRVVPNPYMLRL-NKRTMITTVEPEPSMFPKVTYMLTP 127
Query: 565 LKTIAEI--SPDENIDVLGVCI---DAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
L + + S + +DV+G D A +V G M+R ITL D + ++ +
Sbjct: 128 LSELEQYKGSTERFLDVIGQITQVSDIANFHTVAGTMQ----MRRKITLRDINGVAINLF 183
Query: 620 LWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCS 671
L G A FD + + A V+ F G L+ + G+ D+ Y S
Sbjct: 184 LSGARAMEFDGDKVYNLGQETAVVAIFVGTLM--------KKGLADQPSYLS 227
>gi|57834063|emb|CAD40309.2| OSJNBb0013O03.4 [Oryza sativa Japonica Group]
Length = 2052
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 468 REWN--NARGSGKLF--SIDLLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKP 522
R W +A KL ++ L+DE+G I A +F D F ++ + K+YY++ +KP
Sbjct: 1445 RMWKFCDASDETKLLHKALVLVDETGNSISAQIFPDINEIFEPLLTEGKIYYLAYYRVKP 1504
Query: 523 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI-----SPDENI 577
NK + + N + +S T T V E + PS Y LK+ E D I
Sbjct: 1505 RNKIYRPVANKFAISLTKWTKVEEYLEPP-SSFPSYVYT---LKSFNEFPSLVDKKDSFI 1560
Query: 578 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA 614
D +GV + ++SV T +KR++ + D ++
Sbjct: 1561 DTIGVITEITSITSVRSCTRNADSLKRNVHMRDAKRS 1597
>gi|414883616|tpg|DAA59630.1| TPA: hypothetical protein ZEAMMB73_011121 [Zea mays]
Length = 289
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 88/211 (41%), Gaps = 31/211 (14%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL--DESG-----EIRATMF 496
PI L P I+ RV K E+ A G L I+L+ DE G EI A +
Sbjct: 5 PITELDPRNINVVIRVRVIRKW---EFRGATNDGPLRHINLILADEQGTAIHAEIPAALA 61
Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
++ + +I+ +KVY I + + F + N+ + FT +D P
Sbjct: 62 TEKGS----LIQIEKVYEIRRFRVVSSRSYFKPVQNNLMIQFTLYIQA-KVVKDPPHIFP 116
Query: 557 SVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTY----MKRDITLVDQS 612
Y + I +E++D IDA + + G + Y + RDI + + S
Sbjct: 117 IYIYNLTSFEKI-----EESVDNKNYLIDAIGMLTQIGAPHVAGYNNSSIVRDIFIKNIS 171
Query: 613 QASVTMTLWGKEAETF-------DASNKPVI 636
AS+ +TLWG +A F +NKP++
Sbjct: 172 DASLKITLWGDQASGFSTDNVCNQGNNKPIV 202
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 57 DENIDVLGVCIDAAELSSVTGKTNQKTY----MKRDITLVDQSQASVTMTLWGKEAETF- 111
+E++D IDA + + G + Y + RDI + + S AS+ +TLWG +A F
Sbjct: 129 EESVDNKNYLIDAIGMLTQIGAPHVAGYNNSSIVRDIFIKNISDASLKITLWGDQASGFS 188
Query: 112 ------DASNKP-VIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHK 154
+NKP VI +F+G LS + ++ NPDIPE +
Sbjct: 189 TDNVCNQGNNKPIVIMFFGCLAKQFKGQSYLSGTAATTWYFNPDIPEAQE 238
>gi|321463989|gb|EFX75000.1| hypothetical protein DAPPUDRAFT_250980 [Daphnia pulex]
Length = 154
Score = 50.4 bits (119), Expect = 0.004, Method: Composition-based stats.
Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 19/144 (13%)
Query: 30 CNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDI 89
C E+E+ P K+ F L E + I+V+G + E+ +T KT K KR+I
Sbjct: 19 CLEEEI---PFYKHHFTALDKCQE--SGKIIEVIGGLYEIGEI--ITIKT-AKASTKREI 70
Query: 90 TLVDQSQ-----ASVTMTLWGKEAETFDASNKP---VIAVKAARVSEFQ---GGKTLSLS 138
++DQS VT+T+W AE F + + V+A ++S F G L
Sbjct: 71 KIIDQSYNKPICLQVTITMWNTIAEKFIIAVEKLEVVVAFAGIKISTFSREDGEIFLDSF 130
Query: 139 MSSVLSLNPDIPECHKLQGWFSTQ 162
+++S+NPDIPE +L+ W Q
Sbjct: 131 HDTLVSINPDIPESAELKRWLKQQ 154
>gi|108862225|gb|ABA96519.2| hypothetical protein LOC_Os12g06230 [Oryza sativa Japonica Group]
Length = 2279
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 68/151 (45%), Gaps = 3/151 (1%)
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F +I + KVY ++ ++P ++ + +NN ++FT TT + + D + P Y
Sbjct: 1497 FGPIITEGKVYRLTFYRVRPCSRNYRPVNNRMSINFTKWTT-LEEHLDVPADFPCYAYSP 1555
Query: 563 VPLKTIAEI--SPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTL 620
P + D DV+GV + + ++++ + +KR + + + + + L
Sbjct: 1556 TPYNELRSHVDRKDSFTDVIGVITEVSSVTTIQTRIKDGDSLKRSVCIRNADNVIINIAL 1615
Query: 621 WGKEAETFDASNKPVIAVKAARVSEFQGNLL 651
WG+ A +F K +V+ F G L+
Sbjct: 1616 WGERATSFPEDAIISAGEKEPQVAIFVGTLV 1646
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 63/301 (20%), Positives = 116/301 (38%), Gaps = 33/301 (10%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI--SPDENIDV 62
P ++ + +NN ++FT TT + + D + P Y P + D DV
Sbjct: 1516 PCSRNYRPVNNRMSINFTKWTT-LEEHLDVPADFPCYAYSPTPYNELRSHVDRKDSFTDV 1574
Query: 63 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVK 122
+GV + + ++++ + +KR + + + + + LWG+ A +F K
Sbjct: 1575 IGVITEVSSVTTIQTRIKDGDSLKRSVCIRNADNVIINIALWGERATSFPEDAIISAGEK 1634
Query: 123 AARVSEFQG----GKTLSLSMSSV-LS--------LNPDIPECHKLQGWFSTQTNTRFEP 169
+V+ F G G + S+ +V LS +N D PE + F +EP
Sbjct: 1635 EPQVAIFVGTLVRGYVRNASLGNVSLSGNSACKWYINIDTPEVNS----FKDSIKGNYEP 1690
Query: 170 VS----QRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVF-RGSNTTYKAC 224
+ + G + ++E+ + K V +I+ F ++ Y AC
Sbjct: 1691 IQFIDIPVPNVIVGAEQKTVAQLKELHPFKF----KKHEFQVTVVIKKFCMQASWWYTAC 1746
Query: 225 PSQDCNKKVIDQNNGMYRC-EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL 283
D KK YRC + + + R L ++ GD T LF A+ ++
Sbjct: 1747 ---DICKKTAKPYGRAYRCGDPTCPPIVSASPRFKLNIIAGDETAETTFILFGRLAQRLI 1803
Query: 284 G 284
G
Sbjct: 1804 G 1804
>gi|297722973|ref|NP_001173850.1| Os04g0300175 [Oryza sativa Japonica Group]
gi|255675301|dbj|BAH92578.1| Os04g0300175 [Oryza sativa Japonica Group]
Length = 1718
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 468 REWN--NARGSGKLF--SIDLLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKP 522
R W +A KL ++ L+DE+G I A +F D F ++ + K+YY++ +KP
Sbjct: 1424 RMWKFCDASDETKLLHKALVLVDETGNSISAQIFPDINEIFEPLLTEGKIYYLAYYRVKP 1483
Query: 523 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI-----SPDENI 577
NK + + N + +S T T V E + PS Y LK+ E D I
Sbjct: 1484 RNKIYRPVANKFAISLTKWTKVEEYLEPP-SSFPSYVYT---LKSFNEFPSLVDKKDSFI 1539
Query: 578 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA 614
D +GV + ++SV T +KR++ + D ++
Sbjct: 1540 DTIGVITEITSITSVRSCTRNADSLKRNVHMRDAKRS 1576
>gi|242093306|ref|XP_002437143.1| hypothetical protein SORBIDRAFT_10g021935 [Sorghum bicolor]
gi|241915366|gb|EER88510.1| hypothetical protein SORBIDRAFT_10g021935 [Sorghum bicolor]
Length = 400
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 75/181 (41%), Gaps = 21/181 (11%)
Query: 454 KWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNRFHDMIEKDKV 512
KWT+K + + P+ + L D G+ + A + + + ++E D
Sbjct: 8 KWTVKENMGQRVPL-----------YVGLVLADARGDAMYAEIPQEIIHTLDPLLEVDNT 56
Query: 513 YYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEIS 572
Y IS + PA + + + FT T+ I +E+ P Y L + +I
Sbjct: 57 YVISKFRVNPAKACYKPFSGHLMIEFTEFTS-IKLSENVPPTFPKYIYA---LTSFDKIV 112
Query: 573 PDEN-----IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET 627
P + D+LG +SVT K ++T + R+I + D S + +TLWG A
Sbjct: 113 PAQGPVPILTDILGYITKYTSATSVTPKGKERTSILREIFVKDMSDNELKITLWGDHAIN 172
Query: 628 F 628
F
Sbjct: 173 F 173
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 99/264 (37%), Gaps = 30/264 (11%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN----- 59
PA + + + FT T+ I +E+ P Y L + +I P +
Sbjct: 66 PAKACYKPFSGHLMIEFTEFTS-IKLSENVPPTFPKYIYA---LTSFDKIVPAQGPVPIL 121
Query: 60 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN---- 115
D+LG +SVT K ++T + R+I + D S + +TLWG A F +
Sbjct: 122 TDILGYITKYTSATSVTPKGKERTSILREIFVKDMSDNELKITLWGDHAINFTIDHLNNQ 181
Query: 116 ---KPVIAVKAARV-----SEFQGGKT-LSLSMSSVLSLNPDIPECHKLQGWFSTQTNTR 166
K VIA+ + S + K LS S S LNPDI E F +
Sbjct: 182 ENPKAVIALFVGFIPRKWHSHYAEHKPYLSGSSGSNYYLNPDIQEALPFYKRFKDEP-MY 240
Query: 167 FEPVSQRTGGMGGGAAGNLLLMREIQD----QQLGMGDKADYCSVRGIIQVFRGSNTTYK 222
E + L + + + D+ C+V + + + Y
Sbjct: 241 IERPPPSEDNISAQPQDTPLAEKTVAELNAIDPYEFPDEGYKCTV-TVTHIPDNISWWYM 299
Query: 223 ACPSQDCNKKVIDQNNGMYRCEKC 246
+C + C KK+ Q G YRC KC
Sbjct: 300 SC--KPCKKKMDPQAAGGYRCPKC 321
>gi|149676198|dbj|BAF64710.1| putative transposase [Ipomoea tricolor]
Length = 517
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 77/355 (21%), Positives = 141/355 (39%), Gaps = 48/355 (13%)
Query: 15 NDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE---ISPDENIDVLG--VCIDA 69
+ Y + F + T V E + PS + PL + + I+ E ID++G V I+
Sbjct: 95 HKYMLKFYYKTVV---RELKDIVFPSHMFRLQPLSQLKQKIDINEKELIDLIGMVVEINT 151
Query: 70 AELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA---ETFDASNKP---VIAVKA 123
+ + GK + D L D + T+W E F S K +I ++
Sbjct: 152 PQDKVIAGKATRLI----DFLLEDTEGTQIKCTVWDDHVSKLEPFYQSTKQDPVIILLQF 207
Query: 124 ARVS-EFQGGKTLSLSMSSV--LSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGG 180
RV + G S V + +N D PE + + + VS G
Sbjct: 208 CRVKVDLSTGDIKVCSSFDVTQIWVNSDFPEFQEFRDRLKGEQTPMRSIVSMSNMSYGSA 267
Query: 181 ----AAG--NLLLMREI-QDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKV 233
++G N+ + EI Q ++ G D+ I+ + + Y +C S CNKK+
Sbjct: 268 FEDFSSGQMNVFTISEIYQKKEYG-----DFWVAAKIVGIESSWDWFYVSCKSHGCNKKL 322
Query: 234 IDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGES 293
+N +Y C+KC + + R + V D + L+ E +LG++A ++ +
Sbjct: 323 TLRNT-LYDCDKCKRTWQEGILRYRVKVRAVDLDGNAPFILWDKECTELLGISATDLRQK 381
Query: 294 TEDHP-----ALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLND 343
+ P ++ + +FR+ + E ++ N+FA++ +ND
Sbjct: 382 ILEGPLRIPREIESLVGLAMLFRIAVRKEQFDNLH--------NAFAVMKV-MND 427
Score = 42.7 bits (99), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 65/145 (44%), Gaps = 12/145 (8%)
Query: 647 QGNLLLMREI-QDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGM 705
Q N+ + EI Q ++ G D+ I+ + + Y +C S CNKK+ +N +
Sbjct: 275 QMNVFTISEIYQKKEYG-----DFWVAAKIVGIESSWDWFYVSCKSHGCNKKLTLRNT-L 328
Query: 706 YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-- 763
Y C+KC + + R + V D + L+ E +LG++A ++ + + P
Sbjct: 329 YDCDKCKRTWQEGILRYRVKVRAVDLDGNAPFILWDKECTELLGISATDLRQKILEGPLR 388
Query: 764 ---ALKKALFTQYIFRLRAKLEHYN 785
++ + +FR+ + E ++
Sbjct: 389 IPREIESLVGLAMLFRIAVRKEQFD 413
>gi|300681310|emb|CAZ96018.1| conserved hypothetical protein [Saccharum hybrid cultivar]
Length = 508
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 128/314 (40%), Gaps = 48/314 (15%)
Query: 467 IREWNNARGSGK----LFSIDLLDESGE-IRATMFNDECNRFHDMIEKDKVYYISNCTLK 521
IR+W + SG+ + L D G + A + +D + + KVY + +
Sbjct: 24 IRKWTHHDSSGQGVPLYVGMVLADAQGHAMYAEIADDLIGEKACLFDVGKVYVLKKFVVN 83
Query: 522 PANKKFSSINNDYEMSFTHSTTV--IPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN-ID 578
A K + +++ + ++ + TTV +P + ++P Y PL I + N D
Sbjct: 84 NAKKSYRAVDRNLLINISQHTTVQVVP---NPPSSIPEYIYRITPLPAIKPVRFVYNYTD 140
Query: 579 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAV 638
+G I + K +K R+I + D S + +TLWG +A F+ S+ I
Sbjct: 141 TIGYLIKYKAAHTFVPKNKEKAKTLREIYIKDLSDNVMQVTLWGDQATGFNISD---IYD 197
Query: 639 KAARVSEFQGNLLLM-------REI---QDQQLGMGDKADYCSV-----------RGIIQ 677
+ A GNL++ RE ++ G A C + + +
Sbjct: 198 REA------GNLIVCLIVGCYPREDLMNNNKPCLSGSPACSCYLNPNIPEEPGPFKCAVT 251
Query: 678 VFRGSNTT---YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNS 734
V +NT+ Y AC + C KK Q +G Y C KC +NT R +L + D T+
Sbjct: 252 VVCITNTSSWWYMAC--RPCKKKADQQIDGSYSCPKCGG-YNTAP-RYLLHFIGKDDTSE 307
Query: 735 VWVTLFQNEAESIL 748
+ +EA ++
Sbjct: 308 ASFLAYDDEAYQMI 321
>gi|14591637|ref|NP_143719.1| replication factor A [Pyrococcus horikoshii OT3]
gi|3258332|dbj|BAA31015.1| 361aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 361
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 103/239 (43%), Gaps = 46/239 (19%)
Query: 72 LSSVTGKTNQKTYMKRD--------ITLVDQSQASVTMTLW-GKEAETFDASN-KPVIAV 121
+ V K + Y K+D + + D S + LW GK AE ++ VI V
Sbjct: 84 IGRVLKKYPVREYTKKDGSIGRVASLVIYDDS-GRARVVLWDGKVAEYYNKIEVGDVIKV 142
Query: 122 KAARVSE-FQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGG 180
A+V E G L ++ + + LNP+ P + + T
Sbjct: 143 LDAQVRESLSGLPELHINFRARIILNPEDPRVDSIPPLEEVRIAT--------------- 187
Query: 181 AAGNLLLMREIQDQQLGMGDKADYCSVRGII-QVFRGSNTTYKACPSQDCNKKV-IDQNN 238
++I D + GD+ + +RG I +V+R TY ACP +C KKV D
Sbjct: 188 -----YTRKKIGDIE--PGDR--FIEIRGTIAKVYR--VLTYDACP--ECKKKVDYDPGT 234
Query: 239 GMYRC-EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 296
G++ C E E T IL + D T + VTLF ++AE +LGV+++E+ E ++
Sbjct: 235 GVWICPEHGEVEPIKMT---ILDFGLDDGTGYIRVTLFGDDAEELLGVSSEEIAEKIKE 290
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 12/101 (11%)
Query: 664 GDKADYCSVRGII-QVFRGSNTTYKACPSQDCNKKV-IDQNNGMYRC-EKCNKEFNTFTY 720
GD+ + +RG I +V+R TY ACP +C KKV D G++ C E E T
Sbjct: 199 GDR--FIEIRGTIAKVYR--VLTYDACP--ECKKKVDYDPGTGVWICPEHGEVEPIKMT- 251
Query: 721 RLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 761
IL + D T + VTLF ++AE +LGV+++E+ E ++
Sbjct: 252 --ILDFGLDDGTGYIRVTLFGDDAEELLGVSSEEIAEKIKE 290
>gi|413956258|gb|AFW88907.1| hypothetical protein ZEAMMB73_503872 [Zea mays]
Length = 553
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 36/226 (15%)
Query: 448 LSPYQNKWTIKARVTNKTPIREW--NNARGSGKLFSIDLL--DESG-----EIRATMFND 498
L P I+ RV IR+W A G L I+L+ DE G EI A + D
Sbjct: 39 LHPQSTNVVIRVRV-----IRKWEFRGATNDGPLQYINLVLADEQGTPIHAEIAAALAVD 93
Query: 499 ECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV 558
+ +IE +KVY + + P+ F ++N++ + FT T +D P
Sbjct: 94 K----GSLIEIEKVYELKRFRVTPSRNYFKPVDNNFMIQFTLYTQA-KVVKDPPQVFPRY 148
Query: 559 KYCFVPLKTIAEISPDEN--IDVLGVC--IDAAELSSVTGKTNQKTYMKRDITLVDQSQA 614
Y + I + + IDVLG+ I+ L T + RDI + + S
Sbjct: 149 IYKLTCFENIEDNIDNRTYLIDVLGMLTQINPPHLIGYNNST-----IIRDIFIENTSDM 203
Query: 615 SVTMTLWGKEAETFDAS-------NKPVIAVKAARVSE-FQGNLLL 652
S+ +TLWG +A +F S N+P++ + +++ F+G L
Sbjct: 204 SLKITLWGNQASSFSISDVYNQSNNQPIVILLVGFLAKRFKGQPYL 249
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 113/294 (38%), Gaps = 26/294 (8%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN--IDV 62
P+ F ++N++ + FT T +D P Y + I + + IDV
Sbjct: 113 PSRNYFKPVDNNFMIQFTLYTQA-KVVKDPPQVFPRYIYKLTCFENIEDNIDNRTYLIDV 171
Query: 63 LGVC--IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS------ 114
LG+ I+ L T + RDI + + S S+ +TLWG +A +F S
Sbjct: 172 LGMLTQINPPHLIGYNNST-----IIRDIFIENTSDMSLKITLWGNQASSFSISDVYNQS 226
Query: 115 -NKPVIAVKAARVSE-FQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQ 172
N+P++ + +++ F+G LS + +S NP IPE T +P +
Sbjct: 227 NNQPIVILLVGFLAKRFKGQPYLSSTTASSWYFNPGIPEAQTYYNRLQTNDLQLIQPTAA 286
Query: 173 RTGGMGGGAAGNL--LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCN 230
+ NL + E+ + M Y I ++ + S Y +C C+
Sbjct: 287 EEEILLSQPP-NLEQKTVEELLNIDPDMFPPEGYRCTVTISRIVQNSKWWYPSC--SRCH 343
Query: 231 KKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILG 284
K + G Y C C F Y+L + D T F + A I+G
Sbjct: 344 KSSSQTSTG-YHCTSCGCTDINFRYKLSF--IATDGTCEAEFFCFDSIARKIVG 394
>gi|332158150|ref|YP_004423429.1| replication factor A [Pyrococcus sp. NA2]
gi|331033613|gb|AEC51425.1| replication factor A [Pyrococcus sp. NA2]
Length = 362
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 111/263 (42%), Gaps = 48/263 (18%)
Query: 72 LSSVTGKTNQKTYMKRD--------ITLVDQSQASVTMTLW-GKEAETFDASN-KPVIAV 121
+ V K + Y +RD + + D S + LW GK E ++ VI +
Sbjct: 85 VGRVLKKYPVREYTRRDGSVGRVASLVIYDDS-GRARVVLWDGKVTEYYNKIEVGDVIKI 143
Query: 122 KAARVSE-FQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGG 180
A+V E G L ++ + + LNP+ P + + T
Sbjct: 144 LDAQVKESLSGMPELHINFRARIILNPEDPRVETIPPLEEVRIAT--------------- 188
Query: 181 AAGNLLLMREIQDQQLGMGDKADYCSVRGII-QVFRGSNTTYKACPSQDCNKKV-IDQNN 238
++I+D + GD+ + +RG I +V+R TY ACP +C KKV D+
Sbjct: 189 -----YTRKKIKDIE--AGDR--FIELRGTIAKVYR--VLTYNACP--ECKKKVDYDEET 235
Query: 239 GMYRC-EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH 297
G + C E E T IL + D T + VTLF ++AE +LGV+ +E+ E ++
Sbjct: 236 GTWICPEHGEVEPIKIT---ILDFGLDDGTGYIRVTLFGDDAEELLGVSPEEISEKIKEM 292
Query: 298 PALKKALFTQYIFRLRAKLEHYN 320
+ L T+ R A+ E Y
Sbjct: 293 EEM--GLTTKEAARKLAEEEFYK 313
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 14/125 (11%)
Query: 664 GDKADYCSVRGII-QVFRGSNTTYKACPSQDCNKKV-IDQNNGMYRC-EKCNKEFNTFTY 720
GD+ + +RG I +V+R TY ACP +C KKV D+ G + C E E T
Sbjct: 200 GDR--FIELRGTIAKVYR--VLTYNACP--ECKKKVDYDEETGTWICPEHGEVEPIKIT- 252
Query: 721 RLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAK 780
IL + D T + VTLF ++AE +LGV+ +E+ E ++ + L T+ R A+
Sbjct: 253 --ILDFGLDDGTGYIRVTLFGDDAEELLGVSPEEISEKIKEMEEM--GLTTKEAARKLAE 308
Query: 781 LEHYN 785
E Y
Sbjct: 309 EEFYK 313
>gi|147818369|emb|CAN60163.1| hypothetical protein VITISV_008661 [Vitis vinifera]
Length = 774
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 80/214 (37%), Gaps = 48/214 (22%)
Query: 579 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAV 638
V GV + + K N + KRDIT+ D++ +S
Sbjct: 565 VSGVVQSVSPTMRIRRKNNNEIVPKRDITIADKTPSS----------------------- 601
Query: 639 KAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDCNKK 697
K S + + L + LG DK + S+R I + T Y+AC + CNKK
Sbjct: 602 KGGVRSMYYDRVSLSHVTSNPSLG-EDKPSFFSIRAYISFIKPEQTMWYQAC--KTCNKK 658
Query: 698 VIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-- 755
V D Y I+ V + D + + LF +AE I G +A E+
Sbjct: 659 VTDAIES--------------GYWYIMVVKVSDDSGEACLALFNEQAERIFGCSADELDK 704
Query: 756 -----GESTEDHPALKKALFTQYIFRLRAKLEHY 784
GE LK+A++ ++FR+ Y
Sbjct: 705 LKSQEGEENRFQQKLKEAIWVPHLFRISVAQHEY 738
Score = 47.4 bits (111), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 24/133 (18%)
Query: 200 DKADYCSVRGIIQVFRGSNTT-YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLI 258
DK + S+R I + T Y+AC + CNKKV D Y I
Sbjct: 627 DKPSFFSIRAYISFIKPEQTMWYQAC--KTCNKKVTDAIES--------------GYWYI 670
Query: 259 LPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-------GESTEDHPALKKALFTQYIFR 311
+ V + D + + LF +AE I G +A E+ GE LK+A++ ++FR
Sbjct: 671 MVVKVSDDSGEACLALFNEQAERIFGCSADELDKLKSQEGEENRFQQKLKEAIWVPHLFR 730
Query: 312 LRAKLEHYNGTKK 324
+ Y K+
Sbjct: 731 ISVAQHEYMNEKR 743
>gi|321457156|gb|EFX68248.1| hypothetical protein DAPPUDRAFT_330274 [Daphnia pulex]
Length = 227
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 7/130 (5%)
Query: 33 DEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDIT-- 90
+E P++ + FVP + + +DV+G+ + E V KT T + R +T
Sbjct: 55 EEAAEKPTITFNFVPFDQLTNLENISIVDVIGLVLHLQEKVLVETKT---TKISRSLTAE 111
Query: 91 LVDQSQASVTM-TLWGKEAETFD-ASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPD 148
VD + V + +L+ + ++K ++A+ ++S G + L S+V+ +NPD
Sbjct: 112 FVDSTNTEVRLHSLFNYRGSLLEKVADKCIVALSGVKISNKFGRRYLETLSSTVVQINPD 171
Query: 149 IPECHKLQGW 158
+ E +L+ W
Sbjct: 172 MTEVRELREW 181
>gi|4895168|gb|AAD32756.1| putative replication protein A1 [Arabidopsis thaliana]
Length = 458
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 69/314 (21%), Positives = 128/314 (40%), Gaps = 37/314 (11%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI-----SPDENI 60
A +F + ++ Y+M F T V+ + P F+ L ++ + + I
Sbjct: 51 ATGQFKATDHRYKMGFMAQTRVVRID-------PLSDSYFLSLTAFNDVLNGGLNQNYLI 103
Query: 61 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF----DASNK 116
DV+G ++ E+ ++ NQ T K D L DQ + TLWG AE +A+N
Sbjct: 104 DVVGQIVNVGEMETIDVH-NQPT-KKIDFELRDQKDERLPCTLWGSFAEQVFTACEAANG 161
Query: 117 PVI--AVKAARVSEFQGGKTLSLSM-SSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQR 173
+I V+ A++ ++ +++S + +S + +NPD+PE + + S+
Sbjct: 162 EMIICLVRFAKLKTYKDVRSISNAFNTSQILINPDLPEILEFKDALPKDCLALTLIESKP 221
Query: 174 TGGMGGGAAGNLLL------MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQ 227
+ G+ L ++E+ + +G C+ I + R + Y C +
Sbjct: 222 KSKIDEFPTGDFYLQFAKKTIKEVS-EMFDVGRVKVLCT---IYDIDRDWSWYYIVC--K 275
Query: 228 DCNKK----VIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL 283
CNKK V+ CE C R L V + D + + + LF + I+
Sbjct: 276 KCNKKVTKVVMTSLKAQLWCETCRAPITNVLARYKLHVKVMDSSGEMKLMLFDAMSSEIV 335
Query: 284 GVTAQEVGESTEDH 297
G A + + + D
Sbjct: 336 GCPANNLLDGSFDE 349
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 15/156 (9%)
Query: 477 GKLFSIDLLDESGE-IRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYE 535
G+ F + L D G+ I A++ + NRF +I + I N L A +F + ++ Y+
Sbjct: 4 GETFDMVLSDVRGKKIHASVKREHLNRFERLIVPGEWRAIENFGLTYATGQFKATDHRYK 63
Query: 536 MSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI-----SPDENIDVLGVCIDAAELS 590
M F T V+ + P F+ L ++ + + IDV+G ++ E+
Sbjct: 64 MGFMAQTRVVRID-------PLSDSYFLSLTAFNDVLNGGLNQNYLIDVVGQIVNVGEME 116
Query: 591 SVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE 626
++ NQ T K D L DQ + TLWG AE
Sbjct: 117 TIDVH-NQPT-KKIDFELRDQKDERLPCTLWGSFAE 150
>gi|357441937|ref|XP_003591246.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
gi|355480294|gb|AES61497.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
Length = 524
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 71/324 (21%), Positives = 128/324 (39%), Gaps = 43/324 (13%)
Query: 61 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF-------DA 113
DV+G I+ ++ + + + D+TL D + +LWG+ A+ D
Sbjct: 139 DVIGHVIERGDVKETENEGRKSKVI--DLTLQDLENNRLHCSLWGEHADKIVSFFVNHDN 196
Query: 114 SNKPVIAVKAARVSEFQGGKTLSLSM-SSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQ 172
S+ V+ ++ + ++ G + + + L LN D+PE + + VSQ
Sbjct: 197 SSPVVLILQFCKTRKYLGAMGIVNAFYGTKLILNGDLPEVATYIARMKKTSLQLTQSVSQ 256
Query: 173 RTGGMGGGAAGNLLLMRE------IQDQQLGMGDK-ADYCSVRGIIQVFRGSNTTYKACP 225
+ + +LL + I+ Q+ G A C + + + +++C
Sbjct: 257 ISINSSASLSDDLLNTKRMTIESMIESTQVCQGSVLATICEIETEVDWY------FRSCT 310
Query: 226 SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGV 285
C ++ +NGM RC KC K + R L V++ D T S LF + +G
Sbjct: 311 Q--C-ATLVTVDNGMLRCRKC-KTCKSAVPRFKLHVIVMDDTGSTTFVLFDRQVTQFIGR 366
Query: 286 TAQEV------GESTEDHPALKKALF-TQYIFRLRA-------KLEHYNGTKKIPDGVNI 331
Q++ GE T D+P L Q +F++ K +Y KK D V +
Sbjct: 367 NVQDLINEHEKGEGTNDYPPDFNVLIEKQVLFKVEVGEGNVVKKYRNY-AVKKASDDVGV 425
Query: 332 NSFAMLATQLNDIITDGTLSEFTI 355
M L DG++ E ++
Sbjct: 426 IEQFMSKYNLEK-PNDGSVEELSV 448
>gi|357470781|ref|XP_003605675.1| hypothetical protein MTR_4g036240 [Medicago truncatula]
gi|355506730|gb|AES87872.1| hypothetical protein MTR_4g036240 [Medicago truncatula]
Length = 480
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 105/438 (23%), Positives = 177/438 (40%), Gaps = 73/438 (16%)
Query: 1 MLAAPANKKFSSINNDYEMSFTHSTTVIP-CNEDEVGNMPSVKYCFVPLKTIAEISPDEN 59
M A + + + Y+++F T +P C G+ + FVP+ I S D +
Sbjct: 1 MGVAANGGSYKTTHYPYKLNFQFGTKCLPLCGALVSGS----DFKFVPISDIVGGSYDCD 56
Query: 60 --IDVLGVCIDAAELSSVTGKTNQKTY------MKRDITLVDQSQASVTMTLWG---KEA 108
+DV+G+ +TG ++ Y K ++ ++ + TL+G E
Sbjct: 57 YLVDVIGM---------LTGVGTEREYERNGSATKLNVIAMEADGYKLQCTLFGTYVDEL 107
Query: 109 ETFDASNKP---VIAVKAARVSEFQGGKTLSLSMSSV-LSLNPDIPECHKLQGWFSTQTN 164
TF A+ + V++++ A+V FQ + ++ L NP E + +
Sbjct: 108 NTFLATGETANVVVSIQLAKVKVFQDNIHIQNCLNCTRLKFNPVCVEGTAFKNRMIENDD 167
Query: 165 TRFEPVSQRTGGMGGGAAGNLLL------MREIQD-QQLGMGDKADYCSVRGIIQVFRGS 217
T P++Q + L ++ ++D QQ GM Y + + Q+
Sbjct: 168 TP-SPLTQLAVEPSIDPLQDFLFNTPRTTIQGLKDSQQEGM-----YVVLGTVKQIVNPE 221
Query: 218 NTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQN 277
N Y AC CNK V GM+ CEKCN+ R + V + D ++ LF
Sbjct: 222 NWYYTACM---CNKSVYPAE-GMHFCEKCNRHVVKVFPRYSIKVRVVDDSDCATFVLFDR 277
Query: 278 EAESILGVTAQEVGESTEDHPALKKALFTQ--------YIFRLRAK------LEHYNGTK 323
+A + + ++ E+ H A + L T+ Y+F++ K E K
Sbjct: 278 DATMLFNKSCADILET---HRADEGVLPTEIAALVNCTYLFKVEFKTAISPRFEQSFRVK 334
Query: 324 KI-PDGVNINSFAML-----ATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVL 377
K+ DGV IN F AT + + G+LS + + K +V G SS + + L
Sbjct: 335 KVCTDGVIINQFKAKWAKEEATFIKNTNEMGSLSSL-LDKGKDVLVVGSSSVQSHDLGSL 393
Query: 378 ---IILELNIIKPGTEIG 392
I + NII GT IG
Sbjct: 394 SETIDKDKNIIVEGTPIG 411
>gi|297743678|emb|CBI36561.3| unnamed protein product [Vitis vinifera]
Length = 107
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 58 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ETFD 112
E + V GV + + K++ KRDIT D+++ +V ++LW A E D
Sbjct: 9 ECVYVSGVVQSVSPTMRIRRKSHNDIVPKRDITFADKTKKTVVVSLWNDHATNVGQELLD 68
Query: 113 ASNK-PVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPE 151
++K P++A+K+ +V +FQ +LS S VL +NPD E
Sbjct: 69 NADKFPIVAIKSLKVGDFQVVSLSTLSESIVL-VNPDTRE 107
Score = 42.7 bits (99), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 575 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ETFD 629
E + V GV + + K++ KRDIT D+++ +V ++LW A E D
Sbjct: 9 ECVYVSGVVQSVSPTMRIRRKSHNDIVPKRDITFADKTKKTVVVSLWNDHATNVGQELLD 68
Query: 630 ASNK-PVIAVKAARVSEFQ 647
++K P++A+K+ +V +FQ
Sbjct: 69 NADKFPIVAIKSLKVGDFQ 87
>gi|337284758|ref|YP_004624232.1| replication factor A [Pyrococcus yayanosii CH1]
gi|334900692|gb|AEH24960.1| replication factor A [Pyrococcus yayanosii CH1]
Length = 355
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 105/247 (42%), Gaps = 46/247 (18%)
Query: 72 LSSVTGKTNQKTYMKRD---------ITLVDQSQASVTMTLW-GKEAETFDASN-KPVIA 120
+ V K + Y KRD I D +A V LW GK E ++ ++
Sbjct: 76 VGRVIKKYPPREYTKRDGSVGRVASLIIYDDTGRARVV--LWDGKVGEYYEKVQIGDIVK 133
Query: 121 VKAARVSE-FQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGG 179
V A+V E G L ++ + L +NPD P + + + T ++R
Sbjct: 134 VLDAQVRESLSGLPELHVNFRARLIINPDDPRVEDIPPLEAVKIAT----YTRRP----- 184
Query: 180 GAAGNLLLMREIQDQQLGMGDKADYCSVRGII-QVFRGSNTTYKACPSQDCNKKVIDQNN 238
++E+ D GD+ + VRG I +++R Y ACP +C +KV D +
Sbjct: 185 --------IKELSD-----GDR--FVEVRGTIAKIYR--VLVYDACP--ECKRKV-DYDP 224
Query: 239 GMYRCEKCNKEFNTFTYRL-ILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH 297
GM C + ++ IL I D T + TLF ++AE +LGV A+E+ E ++
Sbjct: 225 GM-NVWICPEHGEVQAMKITILDFGIDDGTGYIRATLFGDDAEELLGVGAEEIAERLKEL 283
Query: 298 PALKKAL 304
+ L
Sbjct: 284 EGMGSTL 290
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 659 QQLGMGDKADYCSVRGII-QVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNT 717
++L GD+ + VRG I +++R Y ACP +C +KV D + GM C +
Sbjct: 186 KELSDGDR--FVEVRGTIAKIYR--VLVYDACP--ECKRKV-DYDPGM-NVWICPEHGEV 237
Query: 718 FTYRL-ILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKAL 769
++ IL I D T + TLF ++AE +LGV A+E+ E ++ + L
Sbjct: 238 QAMKITILDFGIDDGTGYIRATLFGDDAEELLGVGAEEIAERLKELEGMGSTL 290
>gi|261349815|ref|ZP_05975232.1| replication factor A related protein [Methanobrevibacter smithii
DSM 2374]
gi|288860599|gb|EFC92897.1| replication factor A related protein [Methanobrevibacter smithii
DSM 2374]
Length = 800
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 136/326 (41%), Gaps = 58/326 (17%)
Query: 477 GKLFSIDLLDE-------SGEIRATMFNDECNR----FHDMIEKDKVYYISNCTLKPANK 525
G++F+I ++E G R+ F+D R F D +K K Y + K N
Sbjct: 434 GRMFAIGEINEFQRDDGSVGYARSAKFSDGEGRVGLTFWD--QKAKQEYKTGGAYKIENA 491
Query: 526 KFSSINNDYEMSFTHSTTVI--PCNEDEVGNMPSVKYCFVPL---KTIAEISPD-ENIDV 579
K + E++ S VI P + D+ +PS K L K+IA++ D E I V
Sbjct: 492 KVRLGMYEVELNIGGSARVIELPEDSDQARFLPSFKTIETMLYSHKSIADVEEDDEGIIV 551
Query: 580 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVK 639
G I+++++ K Y+K + + D S S+ +TLW + A+ + + I +
Sbjct: 552 TGRIIESSDVREFDRTDGSKGYVKS-LEIADNS-GSINVTLWNENAKK-EWNVGDAIKFQ 608
Query: 640 AARVSEFQGNLLLMR-------------EIQD-----------------QQLGMGDKADY 669
++S F+ + L + EI D + L D+
Sbjct: 609 DPQIS-FRNDSLEINVSRSTSILEPDESEIDDLPTYDELKESIYVPKTIEALENDDRN-- 665
Query: 670 CSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIG 729
+ G ++ G+ CPS C V DQ++ + C C + + Y L++P +
Sbjct: 666 VRITGTLKEVFGNKILITKCPS--CGNTV-DQSSDDFVCSFCGEPIDEPRYLLMVPARLE 722
Query: 730 DWTNSVWVTLFQNEAESILGVTAQEV 755
D T + +T F N AE +L + +++
Sbjct: 723 DDTGEISITFFDNLAEELLDMKKEDI 748
Score = 46.6 bits (109), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 119/279 (42%), Gaps = 37/279 (13%)
Query: 18 EMSFTHSTTVI--PCNEDEVGNMPSVKYCFVPL---KTIAEISPD-ENIDVLGVCIDAAE 71
E++ S VI P + D+ +PS K L K+IA++ D E I V G I++++
Sbjct: 501 ELNIGGSARVIELPEDSDQARFLPSFKTIETMLYSHKSIADVEEDDEGIIVTGRIIESSD 560
Query: 72 LSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG 131
+ K Y+K + + D S S+ +TLW + A+ + + I + ++S
Sbjct: 561 VREFDRTDGSKGYVKS-LEIADNS-GSINVTLWNENAKK-EWNVGDAIKFQDPQISFRND 617
Query: 132 GKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREI 191
+++S S+ + L PD E L + + + + + + I
Sbjct: 618 SLEINVSRSTSI-LEPDESEIDDLPTYDELKES--------------------IYVPKTI 656
Query: 192 QDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFN 251
+ + + + G ++ G+ CPS C V DQ++ + C C + +
Sbjct: 657 E----ALENDDRNVRITGTLKEVFGNKILITKCPS--CGNTV-DQSSDDFVCSFCGEPID 709
Query: 252 TFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 290
Y L++P + D T + +T F N AE +L + +++
Sbjct: 710 EPRYLLMVPARLEDDTGEISITFFDNLAEELLDMKKEDI 748
Score = 38.9 bits (89), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 17/178 (9%)
Query: 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDK 511
+NK I AR+ R + GK+ S++L D +GEI T++N D+I D+
Sbjct: 194 ENKADIIARIVRIPTPRTYEKNGKEGKVTSLELKDATGEISYTLWNKNV----DLI--DE 247
Query: 512 VYYISNCTLKPANKKFSSINNDYEMSFTH-STTVIPCNEDEVGNMPSVKYCFVPLKTIAE 570
+ + ++K + N E+S TH +I + D +P F+ I +
Sbjct: 248 LGLDAGDSVKILGAQVRERNG--ELSLTHWDGRIIKGDFD----VPEFTQEFIK---IGD 298
Query: 571 ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF 628
I+ NI + GV ++ + T K++ R+ + D + S+ T+WG + +
Sbjct: 299 ITEQNNIAIKGVISKLQDIRTFTRKSDGSEGKLRNFDVSDDT-GSIRTTIWGNDTDIL 355
>gi|449688707|ref|XP_004211822.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Hydra magnipapillata]
Length = 99
Score = 48.9 bits (115), Expect = 0.011, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 263 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKLE 317
I D++ + W+T FQ AE+IL V+A+++G + + +A F ++F++RAK+E
Sbjct: 3 IADFSGNQWITAFQESAEAILCVSAEQIGHLKDSDVSQFDMIFSEACFKPFVFKVRAKME 62
Query: 318 HYNGTKKI 325
Y +K+
Sbjct: 63 TYQDERKL 70
Score = 46.2 bits (108), Expect = 0.062, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKLE 782
I D++ + W+T FQ AE+IL V+A+++G + + +A F ++F++RAK+E
Sbjct: 3 IADFSGNQWITAFQESAEAILCVSAEQIGHLKDSDVSQFDMIFSEACFKPFVFKVRAKME 62
Query: 783 HY 784
Y
Sbjct: 63 TY 64
>gi|77550798|gb|ABA93595.1| hypothetical protein LOC_Os11g28660 [Oryza sativa Japonica Group]
Length = 786
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 60 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA------ 113
+DV+GV + + V K+ +KR I + D S +++ +TLWG +A FDA
Sbjct: 341 VDVMGVITEVGAPAIVRPKSRNTDSLKRTIQICDASNSTLPVTLWGDKAAIFDADTIYNA 400
Query: 114 --SNKPVIAVKAARVSEFQG-GKTLSLSMSSVLSLNPDIPECHKLQGWFS 160
+ VI V ++ G G ++ S LN DIPE +L+ FS
Sbjct: 401 GQTQPQVIVFVGMLVKDYPGLGLIVTGSSPCQWYLNLDIPEVLELKESFS 450
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 577 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA 630
+DV+GV + + V K+ +KR I + D S +++ +TLWG +A FDA
Sbjct: 341 VDVMGVITEVGAPAIVRPKSRNTDSLKRTIQICDASNSTLPVTLWGDKAAIFDA 394
>gi|414871341|tpg|DAA49898.1| TPA: hypothetical protein ZEAMMB73_405364 [Zea mays]
Length = 217
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 59 NIDVLGVC--IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS-- 114
NIDVLG+ I+ L T + RDI + + S S+ +TLWG +A +F S
Sbjct: 113 NIDVLGMLTQINPPHLIGYNNST-----IIRDIFIKNTSNMSMKITLWGNQASSFSISDV 167
Query: 115 -----NKPVIAVKAARVSE-FQGGKTLSLSMSSVLSLNPDIPECH 153
N+P++ + +++ F+G LS + +S NP IPE
Sbjct: 168 YNQSNNQPIVILLVGFLAKRFKGQPYLSSTTASSWYFNPGIPEAQ 212
Score = 43.9 bits (102), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 39/179 (21%)
Query: 506 MIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTT---------VIP-------CNE 549
+IE +KVY + + P+ F ++N++ + FT T V P C E
Sbjct: 23 LIEIEKVYELKRFRVTPSRNYFKPVDNNFMIQFTLYTQAKVVKDPPQVFPRYIYKLTCFE 82
Query: 550 DEVGNMPSVKYCF------VPLKTIAEISPDENIDVLGVC--IDAAELSSVTGKTNQKTY 601
+ N+ + Y + K I S NIDVLG+ I+ L T
Sbjct: 83 NIEDNIDNRTYLIGYKDIHIVYKGIIYFS--NNIDVLGMLTQINPPHLIGYNNST----- 135
Query: 602 MKRDITLVDQSQASVTMTLWGKEAETFDAS-------NKPVIAVKAARVSE-FQGNLLL 652
+ RDI + + S S+ +TLWG +A +F S N+P++ + +++ F+G L
Sbjct: 136 IIRDIFIKNTSNMSMKITLWGNQASSFSISDVYNQSNNQPIVILLVGFLAKRFKGQPYL 194
>gi|340506095|gb|EGR32321.1| hypothetical protein IMG5_088090 [Ichthyophthirius multifiliis]
Length = 322
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 48 LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE 107
+K I ++ + +D++ + +E+ + K K KRDI L D+SQ T+TL+GK+
Sbjct: 115 IKDIQKLKQKDQVDIIAIVKQNSEIKQIVSKAGIKQ-AKRDIVLFDESQEQTTLTLFGKQ 173
Query: 108 AETFDASNKPVIAVKAARVSEFQGGKTL 135
E + V+ +K +SE+ +++
Sbjct: 174 TEYNQYNMGDVVLIKNGYISEYGDSRSI 201
Score = 48.1 bits (113), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 565 LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE 624
+K I ++ + +D++ + +E+ + K K KRDI L D+SQ T+TL+GK+
Sbjct: 115 IKDIQKLKQKDQVDIIAIVKQNSEIKQIVSKAGIKQ-AKRDIVLFDESQEQTTLTLFGKQ 173
Query: 625 AETFDASNKPVIAVKAARVSEF 646
E + V+ +K +SE+
Sbjct: 174 TEYNQYNMGDVVLIKNGYISEY 195
>gi|302780169|ref|XP_002971859.1| hypothetical protein SELMODRAFT_412540 [Selaginella moellendorffii]
gi|300160158|gb|EFJ26776.1| hypothetical protein SELMODRAFT_412540 [Selaginella moellendorffii]
Length = 300
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 125/290 (43%), Gaps = 46/290 (15%)
Query: 33 DEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLV 92
D+VG P + + ++E+ PD +DV+GV + L++VT K + +R + L
Sbjct: 8 DDVG-FPKIVLDRKTILEVSEMEPDTFVDVVGV-VTLVGLTNVTCKDSGTLIKRRTLCLG 65
Query: 93 DQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSE-FQGGKTLSLSMSSVLSLNPDIPE 151
D+S S+ + LW +AE + +++ E F+ G+ L + + +
Sbjct: 66 DESGRSIDVCLWDSKAEE-----------EGSKIYEKFERGEKQFLCVKGEIVAS----- 109
Query: 152 CHKLQGWFS-TQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGI 210
++ W+S T +T F V TG G A + E+ L + + +D +
Sbjct: 110 ---VRAWYSVTLDSTSFIHV---TGSSGSNLAVRTTTISEMMGLNLKVMESSDTYRITAN 163
Query: 211 IQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDW 266
I+ R N +Y AC + C KKV + E ++ L V I D
Sbjct: 164 IRDIRIDNFSYPACTRVVNGRQCGKKV------------SSAEIQEVDHKYALHVCIEDS 211
Query: 267 TNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAKL 316
+ VW FQ A ++G+ AQ+ +++ +F+ ++ +R+K+
Sbjct: 212 SQYVWAIAFQEAARELVGLPAQDFASMRDEN----YDVFSAHLDAVRSKV 257
Score = 43.1 bits (100), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 111/268 (41%), Gaps = 54/268 (20%)
Query: 550 DEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLV 609
D+VG P + + ++E+ PD +DV+GV + L++VT K + +R + L
Sbjct: 8 DDVG-FPKIVLDRKTILEVSEMEPDTFVDVVGV-VTLVGLTNVTCKDSGTLIKRRTLCLG 65
Query: 610 DQSQASVTMTLWGKEAE--------TFDASNKPVIAVKAARVSEFQ-------------- 647
D+S S+ + LW +AE F+ K + VK V+ +
Sbjct: 66 DESGRSIDVCLWDSKAEEEGSKIYEKFERGEKQFLCVKGEIVASVRAWYSVTLDSTSFIH 125
Query: 648 -----GNLLLMR-----EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQD 693
G+ L +R E+ L + + +D + I+ R N +Y AC +
Sbjct: 126 VTGSSGSNLAVRTTTISEMMGLNLKVMESSDTYRITANIRDIRIDNFSYPACTRVVNGRQ 185
Query: 694 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 753
C KKV + E ++ L V I D + VW FQ A ++G+ AQ
Sbjct: 186 CGKKV------------SSAEIQEVDHKYALHVCIEDSSQYVWAIAFQEAARELVGLPAQ 233
Query: 754 EVGESTEDHPALKKALFTQYIFRLRAKL 781
+ +++ +F+ ++ +R+K+
Sbjct: 234 DFASMRDEN----YDVFSAHLDAVRSKV 257
>gi|302825877|ref|XP_002994510.1| hypothetical protein SELMODRAFT_432429 [Selaginella moellendorffii]
gi|300137509|gb|EFJ04425.1| hypothetical protein SELMODRAFT_432429 [Selaginella moellendorffii]
Length = 373
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 83/185 (44%), Gaps = 17/185 (9%)
Query: 121 VKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWF-STQTNTRFEPVSQRTGGMGG 179
+K R+S++ G K++S++ S L ++P++ + L W ++ T F V+
Sbjct: 153 MKGGRISDYNG-KSISVTGGSTLLVDPELEDVSWLHEWMVASYDTTNFVHVTN------- 204
Query: 180 GAAGNLLLMREIQDQQLGMGDKADYCSV--RGIIQV--FRGSNTTYKACP----SQDCNK 231
++ ++ + + L + K S R I+ V + + Y AC + C+K
Sbjct: 205 SSSKAVIYGTKTVSEMLSINLKVSEFSAIFRVIVSVKEIQTGDFYYPACMKVVNGRQCSK 264
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG 291
KV + M++C C+ + + L + I D T +W F + A I+G+ A ++
Sbjct: 265 KVTQVSESMWQCNSCDSDSGDIQLKYALHLCILDSTGHIWAVAFDDAANEIVGMPACKLA 324
Query: 292 ESTED 296
+D
Sbjct: 325 ALQDD 329
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 73/334 (21%), Positives = 139/334 (41%), Gaps = 43/334 (12%)
Query: 439 VVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFN 497
++ PI ++ + +W+++ARVT+K + + G + S+D+ D ES +I F
Sbjct: 28 MINEMPIKDINDHCYRWSLRARVTHKGKLVFFETGT-VGCVMSVDVADAESSKICIVGFG 86
Query: 498 DECNRFHDMIEKDKVYYISNCT-LKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
+ R IE+ VY S + ++ + ++ +++E+ + T I ED++ +P
Sbjct: 87 ENAKRLSSEIEQGSVYIFSGYSGVQHSKPAYTPYKSNWEIKAS-KTMEIKRVEDDL-RIP 144
Query: 557 SVKYCFVPLKTIAEISP--DENIDVLG---VCIDAAELSSVTGKTNQKTYMKRDITLVDQ 611
+V +K IS ++I V G + +D EL V+ V
Sbjct: 145 NVVLKRPKMKG-GRISDYNGKSISVTGGSTLLVDP-ELEDVSWLHEWMVASYDTTNFVHV 202
Query: 612 SQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCS 671
+ +S ++G T S I +K VSEF ++ +++ Q G
Sbjct: 203 TNSSSKAVIYG----TKTVSEMLSINLK---VSEFSAIFRVIVSVKEIQTG--------- 246
Query: 672 VRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
+ Y AC + C+KKV + M++C C+ + + L +
Sbjct: 247 -----------DFYYPACMKVVNGRQCSKKVTQVSESMWQCNSCDSDSGDIQLKYALHLC 295
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 761
I D T +W F + A I+G+ A ++ +D
Sbjct: 296 ILDSTGHIWAVAFDDAANEIVGMPACKLAALQDD 329
>gi|414865329|tpg|DAA43886.1| TPA: hypothetical protein ZEAMMB73_055176 [Zea mays]
Length = 566
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 14/174 (8%)
Query: 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE-CNRFHDMIEKD 510
Q K++I ARV K PI R L I+ +I A E F+ ++ +
Sbjct: 38 QRKYSIVARVEVKFPIEPRYRDRQHYILSDIN----GAKIEAIATRYEIVKNFNSLLHEK 93
Query: 511 KVYYISNC--TLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI 568
VY + N L P F +N E+ FTH T V P V P K+ F+ L I
Sbjct: 94 HVYKMHNVWFGLNPGAFNFRHLNGTMELYFTHQTVVEPYTV-PVQMPPFPKHIFLNLDDI 152
Query: 569 AEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
AE+ +D++ + + L ++ +T T+ R I ++D + T+ +WG
Sbjct: 153 AELPNRTLVDIMAIVV---HLDTI-HRTMWGTF--RKIVIMDARWSLHTIKVWG 200
>gi|321446150|gb|EFX60819.1| hypothetical protein DAPPUDRAFT_341257 [Daphnia pulex]
gi|321472615|gb|EFX83584.1| hypothetical protein DAPPUDRAFT_315390 [Daphnia pulex]
Length = 126
Score = 48.1 bits (113), Expect = 0.016, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSAT---NRSVLIILE 381
I DG ++ ML LN + DG L FTI++ K++ V+ V++ + R +LI
Sbjct: 28 ISDGKYSYAYGMLVVSLNYLTVDGQLENFTIIRAKKFPVNNVATKATAGKDKRKLLIFWI 87
Query: 382 LNIIKPGTEIGFKIGNPQPLNTN 404
LN++ E+G +GNPQ LN +
Sbjct: 88 LNLL--WLEVGEILGNPQTLNDD 108
>gi|413923940|gb|AFW63872.1| hypothetical protein ZEAMMB73_151869 [Zea mays]
Length = 414
Score = 48.1 bits (113), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 99/254 (38%), Gaps = 22/254 (8%)
Query: 87 RDITLVDQSQASVTMTLWGKEAETFDAS-------NKPVIAVKAARVSE-FQGGKTLSLS 138
RDI + + S S+ +TLWG +A +F S N+P++ + +++ F+G LS +
Sbjct: 54 RDIFIKNTSDMSLKITLWGNQASSFSISDVYNQSNNQPIVILLVGFLAKRFKGQPYLSST 113
Query: 139 MSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAG-NLLLMREIQDQQLG 197
+S NP IPE + +P + + + + E+ + L
Sbjct: 114 TASSWYFNPGIPEAQTYYNRLQNNDLQQIQPTAAEEEILLSQPPNLDQKTVEELLNIDLD 173
Query: 198 MGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRL 257
M Y I ++ + S Y +C C+K + G Y C C F Y+L
Sbjct: 174 MFPPEGYRCTVTISRIVQNSKWWYPSC--SRCHKSSSQTSTG-YHCTSCGCTDINFRYKL 230
Query: 258 ILPVMIGDWTNSVWVTLFQNEAESILG------VTAQEVGESTEDHPALKKALFTQYIFR 311
+ D T F + A I+G VTA V S AL + ++
Sbjct: 231 NF--IATDGTCEAEFFCFDSIARKIVGKPCDNLVTA--VATSQGPPAALAAIVCLKFTLA 286
Query: 312 LRAKLEHYNGTKKI 325
+ + Y+ T ++
Sbjct: 287 VTINMSAYSVTNRV 300
>gi|147769421|emb|CAN65830.1| hypothetical protein VITISV_038135 [Vitis vinifera]
Length = 904
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Query: 51 IAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-- 108
+ + P+ + + GV + S+ K+N+ KRDIT+ D+++ SV ++LW
Sbjct: 753 VTMVFPEGHCNFSGVVQSVSPTMSIRRKSNKDIVPKRDITIADKTKKSVVVSLWNDHGTN 812
Query: 109 ---ETFDASNK-PVIAVKAARVSEFQGGKTLSLSMSSVLSL 145
E D ++K P++A+K+ +V E G+ L L + SVL L
Sbjct: 813 VGQELLDNADKFPIVAIKSLKVGE---GRVL-LGLISVLHL 849
Score = 45.8 bits (107), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 568 IAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-- 625
+ + P+ + + GV + S+ K+N+ KRDIT+ D+++ SV ++LW
Sbjct: 753 VTMVFPEGHCNFSGVVQSVSPTMSIRRKSNKDIVPKRDITIADKTKKSVVVSLWNDHGTN 812
Query: 626 ---ETFDASNK-PVIAVKAARVSEFQGNLLL 652
E D ++K P++A+K+ +V E G +LL
Sbjct: 813 VGQELLDNADKFPIVAIKSLKVGE--GRVLL 841
>gi|108712185|gb|ABF99980.1| expressed protein [Oryza sativa Japonica Group]
Length = 569
Score = 47.8 bits (112), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 89/218 (40%), Gaps = 19/218 (8%)
Query: 453 NKWTIKARVTNKTPIREWNNARGSGKLFSIDL--LDESGEIR-ATMFNDECNRFHDMIEK 509
++W ++ R T E+ A K+ +DL LDE G++ A + +F ++++
Sbjct: 68 HRWRVRVRATR---FSEFTTANEPDKILRLDLVLLDEQGDMMDAQIPGRRVVQFKPLLKE 124
Query: 510 DKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED--EVGNMPSVKYCFVPLKT 567
VYYI + A ++ ++ FT TTV ED PS +
Sbjct: 125 GAVYYIKYFEVAEARPQYRPVDRLLMAKFTAHTTV---TEDTGPPSTFPSYACKILSFDE 181
Query: 568 IAEISPDENI--DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA 625
+ + ++I D +G+ + +V+ K + IT + +V + LWG A
Sbjct: 182 LRARAYKKDIISDAIGIMTAIGPVQTVSYAGVMKAVLNDHIT---NGRETVVVALWGPHA 238
Query: 626 ETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGM 663
F A N A V F G L + +D+QL +
Sbjct: 239 TQFHAENLQQQADNGHVVMLFVG---LTVKFRDRQLAL 273
>gi|357493169|ref|XP_003616873.1| hypothetical protein MTR_5g085220 [Medicago truncatula]
gi|355518208|gb|AES99831.1| hypothetical protein MTR_5g085220 [Medicago truncatula]
Length = 286
Score = 47.8 bits (112), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 33/233 (14%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDL--LDESGE-IRATMFNDECN 501
I ++SP + WT+ RV +++ N + S FS+DL +D G+ I A++
Sbjct: 8 ISNVSPRKQSWTLVVRVVPAWFGKDYKNKKLS---FSMDLVLIDRKGDRIGASIRRILIY 64
Query: 502 RFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC 561
+F + +++ V+ IS+ + + + N+Y+++FT +T V + +P+ Y
Sbjct: 65 KFKEQLQEGMVFTISSFIVASNSGSYRPSRNEYKLNFTINTKV---KLSKTVLVPTNVYS 121
Query: 562 FVPLKTIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
F P + S D N +DV+GV I G ++ Y +RD S T
Sbjct: 122 FTPAPDVFNESYDNNCLVDVIGVMI---------GVGVEREY-ERD------STYCFKCT 165
Query: 620 LWGKEAETFDA------SNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDK 666
L+G+ E ++ S V+A+ +V FQG L ++ K
Sbjct: 166 LFGEYVEDMNSFLSSGESQNVVVAIMLTKVKLFQGKPTLQNAFSSTRITFNSK 218
>gi|77548273|gb|ABA91070.1| hypothetical protein LOC_Os11g01460 [Oryza sativa Japonica Group]
gi|125535492|gb|EAY81980.1| hypothetical protein OsI_37160 [Oryza sativa Indica Group]
Length = 567
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 89/183 (48%), Gaps = 16/183 (8%)
Query: 455 WTIKARVTNKTPIREWNNAR-GSGKLFSID--LLDESGE-IRATMFNDECNRFHDMIEKD 510
W IK +V +R W++ + +L S+D L+DE G+ I A+++ + + I +
Sbjct: 16 WNIKVKV-----MRLWDSVNSATDELLSLDMILMDEQGDVIHASIWKKLIDNYKTQINES 70
Query: 511 KVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE 570
VY N ++ + +K+ + ND +++F ++T V E + P + F + T+ +
Sbjct: 71 SVYVFGNFKVQES-QKYRPVCNDLKITFMYNTKVKQVKE-TAESFPEYYFDFASIDTLQD 128
Query: 571 -ISPDENI-DVLGVCIDAAELSSVTGKTNQ---KTYMKRDITLVDQSQASVTMTLWGKEA 625
+ D+++ DV+G+ + + + N + R+I L+ + +TLWG+ A
Sbjct: 129 RANKDQHLSDVIGLLTRMKPIETRMTRKNTPNPRLAEIREIELLLLGGDKIRLTLWGQLA 188
Query: 626 ETF 628
F
Sbjct: 189 RFF 191
>gi|413923939|gb|AFW63871.1| hypothetical protein ZEAMMB73_151869 [Zea mays]
Length = 371
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 99/254 (38%), Gaps = 22/254 (8%)
Query: 87 RDITLVDQSQASVTMTLWGKEAETFDAS-------NKPVIAVKAARVSE-FQGGKTLSLS 138
RDI + + S S+ +TLWG +A +F S N+P++ + +++ F+G LS +
Sbjct: 54 RDIFIKNTSDMSLKITLWGNQASSFSISDVYNQSNNQPIVILLVGFLAKRFKGQPYLSST 113
Query: 139 MSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAG-NLLLMREIQDQQLG 197
+S NP IPE + +P + + + + E+ + L
Sbjct: 114 TASSWYFNPGIPEAQTYYNRLQNNDLQQIQPTAAEEEILLSQPPNLDQKTVEELLNIDLD 173
Query: 198 MGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRL 257
M Y I ++ + S Y +C C+K + G Y C C F Y+L
Sbjct: 174 MFPPEGYRCTVTISRIVQNSKWWYPSC--SRCHKSSSQTSTG-YHCTSCGCTDINFRYKL 230
Query: 258 ILPVMIGDWTNSVWVTLFQNEAESILG------VTAQEVGESTEDHPALKKALFTQYIFR 311
+ D T F + A I+G VTA V S AL + ++
Sbjct: 231 NF--IATDGTCEAEFFCFDSIARKIVGKPCDNLVTA--VATSQGPPAALAAIVCLKFTLA 286
Query: 312 LRAKLEHYNGTKKI 325
+ + Y+ T ++
Sbjct: 287 VTINMSAYSVTNRV 300
>gi|115481338|ref|NP_001064262.1| Os10g0186800 [Oryza sativa Japonica Group]
gi|113638871|dbj|BAF26176.1| Os10g0186800 [Oryza sativa Japonica Group]
Length = 343
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 98/213 (46%), Gaps = 23/213 (10%)
Query: 424 GVHNNVAIPRQASAPV--VQTHPIVSLSPYQNK--WTIKARVTNKTPIREWNNARGSGKL 479
GV ++ PR S V+ P+ + S + W++ RV +K + + +R K
Sbjct: 82 GVLHHSLNPRMGSLKRKRVEALPVPTFSDVHPRGSWSLGVRVYHKYHVERFAPSR---KR 138
Query: 480 FSIDLLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEM-- 536
++ LLDE G ++ A +++D+ +R ++ + YY+S +++PA D+
Sbjct: 139 LNLVLLDEQGTKMVAIIYDDQVDRLDPLLREGSAYYVSRMSIEPARMILYQWLADHAFVC 198
Query: 537 SFTHSTTVIPCNEDEVGNM----PSVKYCFVPLKTIAEISPDENI--DVLGVCIDAAELS 590
FT TT+ E+ NM + +PL + E + +I DV+G+ I + +
Sbjct: 199 VFTRDTTI-----TEIANMHEKILPLLPPLMPLDQVFEFTYHNDIYVDVIGMVIFVSSIG 253
Query: 591 SVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
V G + Y R+I ++D S V + + K
Sbjct: 254 FVEGYKKRIPY--RNILIIDGSFKPVMLVIKDK 284
>gi|115456687|ref|NP_001051944.1| Os03g0855700 [Oryza sativa Japonica Group]
gi|108712184|gb|ABF99979.1| expressed protein [Oryza sativa Japonica Group]
gi|113550415|dbj|BAF13858.1| Os03g0855700 [Oryza sativa Japonica Group]
Length = 599
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 89/218 (40%), Gaps = 19/218 (8%)
Query: 453 NKWTIKARVTNKTPIREWNNARGSGKLFSIDL--LDESGEIR-ATMFNDECNRFHDMIEK 509
++W ++ R T E+ A K+ +DL LDE G++ A + +F ++++
Sbjct: 68 HRWRVRVRATR---FSEFTTANEPDKILRLDLVLLDEQGDMMDAQIPGRRVVQFKPLLKE 124
Query: 510 DKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED--EVGNMPSVKYCFVPLKT 567
VYYI + A ++ ++ FT TTV ED PS +
Sbjct: 125 GAVYYIKYFEVAEARPQYRPVDRLLMAKFTAHTTV---TEDTGPPSTFPSYACKILSFDE 181
Query: 568 IAEISPDENI--DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA 625
+ + ++I D +G+ + +V+ K + IT + +V + LWG A
Sbjct: 182 LRARAYKKDIISDAIGIMTAIGPVQTVSYAGVMKAVLNDHIT---NGRETVVVALWGPHA 238
Query: 626 ETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGM 663
F A N A V F G L + +D+QL +
Sbjct: 239 TQFHAENLQQQADNGHVVMLFVG---LTVKFRDRQLAL 273
>gi|348666728|gb|EGZ06555.1| hypothetical protein PHYSODRAFT_380579 [Phytophthora sojae]
Length = 68
Score = 47.8 bits (112), Expect = 0.024, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 455 WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNRFHDMIEKDKVY 513
W+ R+ ++P+R + + R SG+LF D G +R T+FN+ RF D++ V
Sbjct: 1 WSFIGRILARSPVRTFKSWRASGRLFRAHFTDRDGATLRVTVFNEGAERFFDVLSPGAVC 60
Query: 514 YISNCTLK 521
SN +K
Sbjct: 61 SFSNGRIK 68
>gi|242048790|ref|XP_002462141.1| hypothetical protein SORBIDRAFT_02g020420 [Sorghum bicolor]
gi|241925518|gb|EER98662.1| hypothetical protein SORBIDRAFT_02g020420 [Sorghum bicolor]
Length = 770
Score = 47.8 bits (112), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 104/240 (43%), Gaps = 36/240 (15%)
Query: 437 APVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATM 495
AP ++ + + + P ++ WTIK RV + +G + + L+DE G I A +
Sbjct: 228 APQMEYNLLSKIDPTRHNWTIKVRVARMWKLSSTPKWKGVTAM-ELVLVDEQGMGITACV 286
Query: 496 FNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNM 555
+ + +F D + + + Y I + +K++ + N + FT T + +
Sbjct: 287 GHKDLTKFADALVEGRSYVIKKFQVSRHPRKYNPVPNPQTIYFTPWTAIEEIPTKLSTQL 346
Query: 556 PSVKYCFVPLKTIAEISPDEN-----------------IDVLGVCIDAAELSSVTGKTNQ 598
P + FV + + + +E+ + V+ + + + L+ VT
Sbjct: 347 PRNVFNFVDFEELGQRRRNEHGLVGDVVFGLLPDVIGQLTVIHLLLRSNGLNGVT----- 401
Query: 599 KTYMKRDITLVDQSQASVTMTLWGKEAETFD--------ASNKPVIAVKAA-RVSEFQGN 649
++R + L D S + +TLWG+ A +F+ A ++P++ V A +V ++ G+
Sbjct: 402 ---VRRVLELRDLSDRLLHITLWGEHATSFEGESLTETIAKDEPIVMVFAGVQVKQYLGS 458
>gi|41393261|gb|AAS01984.1| expressed protein, with alternative splicing isoforms [Oryza sativa
Japonica Group]
Length = 545
Score = 47.4 bits (111), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 89/218 (40%), Gaps = 19/218 (8%)
Query: 453 NKWTIKARVTNKTPIREWNNARGSGKLFSIDL--LDESGEIR-ATMFNDECNRFHDMIEK 509
++W ++ R T E+ A K+ +DL LDE G++ A + +F ++++
Sbjct: 14 HRWRVRVRATR---FSEFTTANEPDKILRLDLVLLDEQGDMMDAQIPGRRVVQFKPLLKE 70
Query: 510 DKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED--EVGNMPSVKYCFVPLKT 567
VYYI + A ++ ++ FT TTV ED PS +
Sbjct: 71 GAVYYIKYFEVAEARPQYRPVDRLLMAKFTAHTTV---TEDTGPPSTFPSYACKILSFDE 127
Query: 568 IAEISPDENI--DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA 625
+ + ++I D +G+ + +V+ K + IT + +V + LWG A
Sbjct: 128 LRARAYKKDIISDAIGIMTAIGPVQTVSYAGVMKAVLNDHIT---NGRETVVVALWGPHA 184
Query: 626 ETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGM 663
F A N A V F G L + +D+QL +
Sbjct: 185 TQFHAENLQQQADNGHVVMLFVG---LTVKFRDRQLAL 219
>gi|20198198|gb|AAM15454.1| putative replication protein A1 [Arabidopsis thaliana]
Length = 521
Score = 47.4 bits (111), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 15/169 (8%)
Query: 491 IRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED 550
++ T+ +FH ++ I N L P+ K+ + Y M F H+T V C D
Sbjct: 1 MQVTLRKHYIGKFHRSLKVGDWKIIDNFNLSPSTGKYKISSLSYPMGFKHNTEVSKC--D 58
Query: 551 EVGNMPSVKYCFVPLKTIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQKTYMKRDITL 608
V + SV + I S DEN ID+LG + ++ + + K K + +
Sbjct: 59 SVSD--SVFLDLADFEGIKTESYDENVLIDILGQVVSVGKVDEIVAQ--NKPNKKLEFQI 114
Query: 609 VDQSQASVTMTLWGKEAE-TFDA------SNKPVIAVKAARVSEFQGNL 650
D S ++ TLWG AE F A K V+ ++ A+++ F+ +
Sbjct: 115 RDVSNELLSCTLWGVFAEKVFSALKSVKHDQKTVVLIRYAKINNFKSEI 163
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 17/159 (10%)
Query: 4 APANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN--ID 61
+P+ K+ + Y M F H+T V C D V + SV + I S DEN ID
Sbjct: 31 SPSTGKYKISSLSYPMGFKHNTEVSKC--DSVSD--SVFLDLADFEGIKTESYDENVLID 86
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE-TFDA------S 114
+LG + ++ + + K K + + D S ++ TLWG AE F A
Sbjct: 87 ILGQVVSVGKVDEIVAQ--NKPNKKLEFQIRDVSNELLSCTLWGVFAEKVFSALKSVKHD 144
Query: 115 NKPVIAVKAARVSEFQG--GKTLSLSMSSVLSLNPDIPE 151
K V+ ++ A+++ F+ T + +S V+ +PE
Sbjct: 145 QKTVVLIRYAKINNFKSEISITSAFDVSDVIIHPVHVPE 183
>gi|413934560|gb|AFW69111.1| hypothetical protein ZEAMMB73_279578 [Zea mays]
Length = 357
Score = 47.4 bits (111), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 92/197 (46%), Gaps = 18/197 (9%)
Query: 467 IREWNNARGSGKLFSIDL--LDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPA 523
+ E+ + + +L DL LDE G I A ++ C +F ++++ VY + ++ A
Sbjct: 25 LWEFLDPQDDSRLLHTDLVLLDEEGNSIHAQIYPPLCQQFSALLDEGAVYNLKYFLVRKA 84
Query: 524 NKKFSSINNDYEMSFTHSTTV-----IPCNEDEVGNMPSVKYCFVPLKTI-AEISPDENI 577
N+ + + N +SFT TTV IP P Y P++ + A + E
Sbjct: 85 NRFYKPVENCNMISFTKWTTVEVVLQIP------PAFPVCTYNLTPIEQLQARVDYKEYF 138
Query: 578 -DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVD--QSQASVTMTLWGKEAETFDASNKP 634
DV+GV + +SS+ + Q MKR +T+ + + +V + LWG+ A TF A
Sbjct: 139 TDVVGVVSVISHVSSLRTRGRQAEVMKRTVTISNARDTGPTVDVVLWGERATTFPAEQIH 198
Query: 635 VIAVKAARVSEFQGNLL 651
+ + ++ F G L+
Sbjct: 199 RDSRSSPQIIVFVGTLV 215
>gi|38346906|emb|CAE03875.2| OSJNBb0015N08.3 [Oryza sativa Japonica Group]
Length = 696
Score = 47.4 bits (111), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 100/239 (41%), Gaps = 16/239 (6%)
Query: 60 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS----- 114
+DV+G I A +++ ++ M+R + L D S ++ ++L GK A FD
Sbjct: 332 VDVIGKII-AVSNAAMISTSSSDYRMRRIVKLQDLSGKTIDLSLSGKRAVEFDGETILEV 390
Query: 115 --NKPVIAVKAARVSEFQGG--KTLSLSMSSVLSLNP-DIPECHKLQGWFSTQTNTRFEP 169
N +IA+ + G + LS + + +N DIPE Q + +
Sbjct: 391 GQNNHIIAIFVGTSMKILKGTYEFLSGTTACRWYINENDIPEIKMFQKCLPPHADPIQKL 450
Query: 170 VSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDC 229
Q M L E+++ + Y II + Y+AC + C
Sbjct: 451 YLQSDEDMQRSIEHKTL--AELKEIDPFVDKDEKYQCTATIIGIQERKTWCYQAC--KLC 506
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 288
N K+I + + +C+K N + Y+ +P + D T S+ + LF+ + ++G TA+
Sbjct: 507 NCKMI-WDGSILKCKKENCPCRQYEYKYKIPFIANDGTASLELVLFEKKGTELIGRTAE 564
>gi|413941935|gb|AFW74584.1| hypothetical protein ZEAMMB73_338699 [Zea mays]
Length = 537
Score = 47.0 bits (110), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 14/174 (8%)
Query: 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNR-FHDMIEKD 510
Q K++I ARV K PI R L I+ +I A + E + F+ ++ +
Sbjct: 147 QRKYSIVARVEVKFPIEPRYRDRQHYILSDIN----GAKIEAIVTRYEIVKYFNSLLHEK 202
Query: 511 KVYYISNC--TLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI 568
VY + N L P F +N E+ FT T V P V P K+ F+ L I
Sbjct: 203 HVYKMHNVWFGLNPGAFNFRHLNGTMELYFTQQTVVEPYTV-PVQMPPFPKHIFLNLDDI 261
Query: 569 AEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
AE+ +D++ + + L ++ +T T+ R I ++D + T+ +WG
Sbjct: 262 AELPNRTLVDIMAIVV---HLDTIH-RTMWGTF--RKIVIMDARWSLHTIKVWG 309
>gi|413921320|gb|AFW61252.1| hypothetical protein ZEAMMB73_336018 [Zea mays]
Length = 594
Score = 47.0 bits (110), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 76/368 (20%), Positives = 132/368 (35%), Gaps = 46/368 (12%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI-AEISPDEN-IDVL 63
A F ++ D + FT+ T +I + D Y P + + I +E +DVL
Sbjct: 111 ARLMFKPVHMDKMIHFTYHT-IINASLDTPPAFSRYVYHLTPFDQLESYIQKNEYFLDVL 169
Query: 64 GVCIDAAELSSVTGKTNQKTYMK----------RDITLVDQ-----------------SQ 96
GV + L V T + + + TL+ S
Sbjct: 170 GVITQVSALKPVGTHTQESSNVIKEIIIKDIKYETTTLIQHNFLQMFEFYIHHVTTICSD 229
Query: 97 ASVTMTLWGKEAETFDASN-------KPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDI 149
++ +TLW + A F N KP++ + +++ G L+ + NPDI
Sbjct: 230 ITMRVTLWAERARAFKLENVYDPLEQKPIVTLFVGCLAKNFQGIYLNGGTACRWYFNPDI 289
Query: 150 PECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRG 209
E F +Q Q + + E+ + K Y
Sbjct: 290 REAAPYYQRFESQKIKLHISSEQEQLYVTKETNVEHKTLHELLELHPYAFPKQGYQCTAT 349
Query: 210 IIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNS 269
II+V S + AC C + QN G Y C C E Y+L M D T +
Sbjct: 350 IIEVPTTSRWWFPAC--TKCGRACKPQNGGYY-CPYCKSEAYILRYKLTF--MGSDGTAT 404
Query: 270 VWVTLFQNEAESILGVTAQ----EVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ F A+ ++G + + +V E+ P L + + ++ FR+ + ++ ++
Sbjct: 405 AQMFCFDTVAQHVVGRSCETVLKQVTEAAPIPPDLAQIVSLKFTFRVTVSNQTFSQREQR 464
Query: 326 PDGVNINS 333
P + INS
Sbjct: 465 PTVLQINS 472
>gi|357506747|ref|XP_003623662.1| hypothetical protein MTR_7g074180 [Medicago truncatula]
gi|355498677|gb|AES79880.1| hypothetical protein MTR_7g074180 [Medicago truncatula]
Length = 326
Score = 47.0 bits (110), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 85/185 (45%), Gaps = 8/185 (4%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDE-SGEIRATMFNDECNR 502
PI ++S + + RV + IRE N S ++ L+DE G I AT D +
Sbjct: 7 PISAISGGRKNLKMCVRVAHIWLIRE-NKVPTSIIFMNMLLVDEKGGRIHATARKDLVAK 65
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F M+++ Y + N + + + +N +++S H++T + + P + F
Sbjct: 66 FRCMVQEGGTYQLENAIVGFNESHYKATSNKHKLSMMHNSTFTKVHSPAI---PMNVFEF 122
Query: 563 VPLKTIAEISPDE-NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
P I + +E + V+G I+ ++ T K +K+ + D+TL D + +LW
Sbjct: 123 KPFNEILSSTVEEVSTAVIGHVIERGDIRE-TEKDGRKSRVI-DLTLEDLENNRLHCSLW 180
Query: 622 GKEAE 626
G+ A+
Sbjct: 181 GEHAD 185
>gi|405967487|gb|EKC32641.1| Replication factor A protein 1 [Crassostrea gigas]
Length = 678
Score = 47.0 bits (110), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 84/203 (41%), Gaps = 36/203 (17%)
Query: 441 QTHPIVSLSPYQNKWTIKAR----VTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMF 496
+ + I L+ W I+ + +T +E+ N SG+ + L DESG+IR F
Sbjct: 9 KIYDIAKLTTKLKHWKIRVKFKLSLTPTEKKKEFKNLNKSGRHCAYILEDESGQIRLFAF 68
Query: 497 NDECNRFHD---MIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVG 553
+D R ++ + Y+I +K A+K F S + Y++ F S + P E E+
Sbjct: 69 DDIATRLESYDIQMDDGQEYFIWGAEIKVADKGFYSYGHKYQLKFLKSAGIRPV-EGELS 127
Query: 554 ------------------------NMPSVKYCF--VPLKTIAEISPDENIDVLGVCIDAA 587
+ +K F VPL+ + + + DVLG+ + +
Sbjct: 128 MKENGATSSATASTSHIAKTTGAEDTKKIKLAFDPVPLEEVENYKSEPHFDVLGIIKECS 187
Query: 588 ELSSVTGKTNQKTYMKRDITLVD 610
+T+Q + +++ L+D
Sbjct: 188 VPEHKQQETSQ--FFVKNMRLID 208
>gi|328857108|gb|EGG06226.1| hypothetical protein MELLADRAFT_87378 [Melampsora larici-populina
98AG31]
Length = 191
Score = 47.0 bits (110), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 32/148 (21%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DGV+ + AML+TQLN +I +G L IV++ Y ++ V R V+++L + +
Sbjct: 58 ISDGVHFIT-AMLSTQLNHLIDEGMLQRMCIVKLPSYTINMVG-----ERRVVVLLTVEV 111
Query: 385 IKPGTEIGFKIGN------------------PQPLNTNTDNSSTQQTPAATNTNGSNGVH 426
I + KIGN P+P +T+ + T P+ N+N ++
Sbjct: 112 ID--STCTKKIGNPTACGAPEDGAARPVVAKPEPTTEDTEPTITPSKPSVPNSNAKPSMN 169
Query: 427 NNVAIPRQASAPVVQTHPIVSLSPYQNK 454
++ RQ V+ PI+ LSP NK
Sbjct: 170 SSN---RQVGPYVI---PIMDLSPDSNK 191
>gi|224138504|ref|XP_002326619.1| predicted protein [Populus trichocarpa]
gi|222833941|gb|EEE72418.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 46.6 bits (109), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 60 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD-----AS 114
IDVLG L V + Q K++ + + + +TLWG A++FD
Sbjct: 135 IDVLGRLKAIQPLEQVLVR-GQDITDKKEFIIENIMGDELRITLWGDVAKSFDDFVLHEH 193
Query: 115 NKPVIAVKAA-RVSEFQGGKTLSLSMSSVLSLNPDIPE 151
P+I V A RV+EF+G L+ +++S NP+IPE
Sbjct: 194 TNPIIVVFAGFRVTEFKGKPNLASTVASFWYFNPEIPE 231
>gi|388499736|gb|AFK37934.1| unknown [Lotus japonicus]
Length = 406
Score = 46.2 bits (108), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 100/233 (42%), Gaps = 39/233 (16%)
Query: 437 APVVQTHPIVSLSPYQNKWTIKARVTNKTPIREW--NNARGSGKLFSIDLL---DESGEI 491
A V P+V+L P + W IK RV +R W + G K S++L+ G+I
Sbjct: 2 ASSVAIDPVVTLCPPNHNWRIKVRV-----VRLWIADGFAGENKPASMELILLDQHGGKI 56
Query: 492 RATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDE 551
+AT+ ++ + + VY I+ L P + ++ + + F T +IP E
Sbjct: 57 QATVRKLMFRKWGEQFVEGNVYIITFFHLIPNLGAYRPTDHAFRILFNPKTKIIPA---E 113
Query: 552 VGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITL--- 608
+P + LK ++++ D + + + ++TY+K DI
Sbjct: 114 SSIIPRWGFS---LKDSSQLND-----------DGFQTEYLVATSEERTYVKDDIVTKMM 159
Query: 609 ---VDQSQASVTMTLWGKEAET---FDASN---KPVIAVKAARVSEFQGNLLL 652
+ + + L+G+ + + +SN KPV+ ++ A++ F+G +L
Sbjct: 160 LLEISDDKGKLECALFGEYVQIVLDYLSSNPLEKPVVVLQLAKLKSFRGKNVL 212
>gi|297619538|ref|YP_003707643.1| tRNA/helicase-type nucleic acid-binding protein [Methanococcus
voltae A3]
gi|297378515|gb|ADI36670.1| nucleic acid binding OB-fold tRNA/helicase-type [Methanococcus
voltae A3]
Length = 643
Score = 46.2 bits (108), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 74/342 (21%), Positives = 142/342 (41%), Gaps = 39/342 (11%)
Query: 456 TIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYI 515
++K +V NK+ +RE K+ I + D +G +RA + + + + E D++ I
Sbjct: 292 SVKGKVLNKSIVREVEFPDRVAKVQEIKVSDGTGNVRAVFWGNNIVKLDGIDEGDEISLI 351
Query: 516 SNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDE 575
+ T K N+ S D +F S +I ++ E+ + SV + E ++
Sbjct: 352 NCKTKKYMNRMTDSEVVDLTFTFASSLNLIEKSKTEI-KLNSV-------SDLVEKFENK 403
Query: 576 NIDVLGVCIDAAELSSVTGKT----NQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS 631
+D V A SS K + + + I L D + +V MTLW + +
Sbjct: 404 ELDADDVSFGAKVYSSYPAKEFSRYDGSKGLVKSIELSDGDK-TVRMTLWDDNT-NLEIT 461
Query: 632 NKPVIAVKAARVSEFQG------NLLLMREIQDQQLGMG---------DKADYCSVRGII 676
+ V A++ E G N EI + L + ++ ++ +
Sbjct: 462 EGDTLKVLHAKIKENNGYYDINTNKYTNIEINPKDLNLVSVRKHIVDINEESKVELQATV 521
Query: 677 QVFRGSNTTYKACPSQDCNKK--VIDQNNGMYRCEKCNK-EFNTFTYRLILPVMIGDWTN 733
+R + CP+ C K+ V+D N+G+ CE C + E N L +++ D T
Sbjct: 522 VDYRKQDLILNLCPT--CRKRLSVVDSNSGVGVCETCGEVEPNEV---LTATIVLDDGTG 576
Query: 734 SVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIF 775
++ ++ + G++ E+ E ++ AL A+ +Y+F
Sbjct: 577 TINARVYDANISKLTGLSIDELKE--KNIEALNLAIGNEYVF 616
Score = 39.3 bits (90), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 443 HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGS-GKLFSIDLLDESGEIRATMFNDECN 501
+ I + Q I R+ + I+E+N GS GKL S+ + D SG IR T++ND+ +
Sbjct: 61 YKISDILEGQRDVEITGRIIEISNIKEFNKKDGSTGKLASLRIADNSGAIRLTLWNDKAD 120
Query: 502 RFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK 559
+ + D +K N + NN E++ ++ +E + N P +K
Sbjct: 121 LIIGLKKGD--------VIKIENAFARNWNNKMELNSGSELSIEKLDEFDESNYPKIK 170
>gi|414588073|tpg|DAA38644.1| TPA: hypothetical protein ZEAMMB73_739939 [Zea mays]
Length = 336
Score = 46.2 bits (108), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 61 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA------- 113
DVLGV + E++ + ++ + R I + D S + +TLW +A +F
Sbjct: 121 DVLGVIVQVHEMTPIHIQSQLTPVLTRSIIIEDLSNIPLKITLWADQATSFSLHDVYDPN 180
Query: 114 SNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT 165
+ KP++ + + +F G LS + NP IPE T+T T
Sbjct: 181 TKKPIVVLFVGCLPKFYKGVYLSGGSACRWYFNPIIPEAEPYHTSHQTRTIT 232
>gi|281209308|gb|EFA83481.1| hypothetical protein PPL_03629 [Polysphondylium pallidum PN500]
Length = 1647
Score = 46.2 bits (108), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 82/159 (51%), Gaps = 21/159 (13%)
Query: 502 RFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC 561
+F D+ E K+YYI+N A + ++++ + + T T VIPC E E ++P++ Y
Sbjct: 80 KFKDVAE-GKIYYITNVC---AEISYFAVDHPFVLRCTSWTEVIPCPE-EFKSLPTL-YR 133
Query: 562 FVPLKTIAEISPDENIDVLGVCIDA-----AELSSVTGKTNQKTYMK-------RDITLV 609
F+ + ++ E+ E I V +D ++ SS G +K+ + + ITL
Sbjct: 134 FISMSSL-EVDYKELIAYKRVFVDVIGYVQSKESSRVGSKIKKSKIDETAIVSIQTITLA 192
Query: 610 DQSQASVTMTLWGKEAETF--DASNKPVIAVKAARVSEF 646
D S+++ +G+ E + D + +IA+K+A++S F
Sbjct: 193 DTENHSISVVFFGESIERYLADINVGDIIAIKSAKISCF 231
Score = 43.1 bits (100), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 83/167 (49%), Gaps = 23/167 (13%)
Query: 10 FSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDA 69
+ ++++ + + T T VIPC E E ++P++ Y F+ + ++ E+ E I V +D
Sbjct: 101 YFAVDHPFVLRCTSWTEVIPCPE-EFKSLPTL-YRFISMSSL-EVDYKELIAYKRVFVDV 157
Query: 70 -----AELSSVTGKTNQKTYMK-------RDITLVDQSQASVTMTLWGKEAETF--DASN 115
++ SS G +K+ + + ITL D S+++ +G+ E + D +
Sbjct: 158 IGYVQSKESSRVGSKIKKSKIDETAIVSIQTITLADTENHSISVVFFGESIERYLADINV 217
Query: 116 KPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDI---PECHKLQGWF 159
+IA+K+A++S F LSL SSV + DI + +L+ W
Sbjct: 218 GDIIAIKSAKISCFNR---LSLIYSSVTYHDKDIEHLKQYRELKDWL 261
>gi|3695387|gb|AAC62789.1| contains similarity to replication protein A1 [Arabidopsis
thaliana]
gi|10177641|dbj|BAB10788.1| replication protein A1-like [Arabidopsis thaliana]
Length = 1073
Score = 46.2 bits (108), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 81/386 (20%), Positives = 142/386 (36%), Gaps = 84/386 (21%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI--AEISPDENIDVL 63
A+ +F N+ Y+M+F T V+ C N P I E++P +D +
Sbjct: 33 ASSQFRPTNHLYKMAFQVRTEVMGCASVSDSNF----LTLAPFSKIQSGELNPHMLVDAI 88
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF-----DASNKPV 118
G I EL + + N K K D + DQ + +TLWG A+ ++ K V
Sbjct: 89 GQIITVGELEEL--EANNKPTTKIDFEIRDQMDERMQVTLWGTYAQQVYRACQESEGKNV 146
Query: 119 I-AVKAARVSEFQ---------------------------GGKTLSLSM-SSVLSLNPDI 149
I ++ A++ ++ G K+LS S +S + +NPD
Sbjct: 147 IFLIRFAKIKSYKGIFSFFVPIPFLSILHDLWSLKCYETAGVKSLSNSFDASQVHVNPDF 206
Query: 150 PECHKLQGWFSTQTNT--------RFEPVSQRTGGMG---GGAAGNLLLMREIQDQQLGM 198
PE H RFE V+ + +LL E+
Sbjct: 207 PEAHHFSQTLPNDGAICVYRTRVPRFEMVAVKRIDYSVYTRNTIEDLLSSTEV------- 259
Query: 199 GDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGM-----------YRCEKCN 247
G C++ I ++ + + CNKKV + G+ + C+ C
Sbjct: 260 GKVRVLCTIYAI-----DTDWAWYYISCKTCNKKVNHIHAGVNGVNNKGKKPKFWCDTCK 314
Query: 248 KEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG-------ESTEDHP-A 299
R ++ + D T+ + LF + I+G +A V E ED P +
Sbjct: 315 SVVTNVVSRYMIYAKVMDSTSEAKLVLFDSICFEIIGESATSVLNGSVNEIEDPEDLPDS 374
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+K + ++F + + ++ + K+I
Sbjct: 375 VKNLIGKTFLFLVWVEKDNISDGKEI 400
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 491 IRATMFNDECNRF-HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNE 549
+ AT+ + ++F H +I + V+ I L A+ +F N+ Y+M+F T V+ C
Sbjct: 1 MHATVKKELVSKFVHKLIVGEWVF-IEIFRLTYASSQFRPTNHLYKMAFQVRTEVMGCAS 59
Query: 550 DEVGNMPSVKYCFVPLKTI--AEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDIT 607
N P I E++P +D +G I EL + + N K K D
Sbjct: 60 VSDSNF----LTLAPFSKIQSGELNPHMLVDAIGQIITVGELEEL--EANNKPTTKIDFE 113
Query: 608 LVDQSQASVTMTLWGKEAETF-----DASNKPVI-AVKAARVSEFQG 648
+ DQ + +TLWG A+ ++ K VI ++ A++ ++G
Sbjct: 114 IRDQMDERMQVTLWGTYAQQVYRACQESEGKNVIFLIRFAKIKSYKG 160
>gi|413922380|gb|AFW62312.1| hypothetical protein ZEAMMB73_585961 [Zea mays]
Length = 482
Score = 45.8 bits (107), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 13/166 (7%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN--IDVL 63
A F ++ Y + T + NED + P + P + ++ + IDV+
Sbjct: 33 AKLSFKPVHGKYMIRLHPKTLLEEVNEDP-QDFPKYTFHLTPFPELPQLEGNNEYFIDVI 91
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS--------N 115
G CI A ++ ++ MKR I LVD + ++LWG+ AE F N
Sbjct: 92 G-CITALSDATPFQTSSGIVRMKRLIHLVDLRGNKIEVSLWGRRAEEFPGQQVFKASEMN 150
Query: 116 KPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST 161
++ V ++G LS ++ ++PE H++ ++++
Sbjct: 151 HVIVIFVGTSVKSYRGSPPF-LSGTAACRWYINLPEIHEINTFYAS 195
Score = 42.4 bits (98), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 4/124 (3%)
Query: 507 IEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLK 566
+++ K+ + + A F ++ Y + T + NED + P + P
Sbjct: 17 LQESKILIMRKIYVDNAKLSFKPVHGKYMIRLHPKTLLEEVNEDP-QDFPKYTFHLTPFP 75
Query: 567 TIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE 624
+ ++ + IDV+G CI A ++ ++ MKR I LVD + ++LWG+
Sbjct: 76 ELPQLEGNNEYFIDVIG-CITALSDATPFQTSSGIVRMKRLIHLVDLRGNKIEVSLWGRR 134
Query: 625 AETF 628
AE F
Sbjct: 135 AEEF 138
>gi|402220879|gb|EJU00949.1| hypothetical protein DACRYDRAFT_16343 [Dacryopinax sp. DJM-731 SS1]
Length = 578
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 79/204 (38%), Gaps = 15/204 (7%)
Query: 77 GKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLS 136
G + M+ D+ LVD S SV + + + + ++ V +K V G +
Sbjct: 273 GHASAAPMMRIDMWLVDDSGRSVCLVAFNEFWAELEGTDGCVALLKNIAVDCTYGMSLKT 332
Query: 137 LSMSSVLSLNPDI-PECHKLQGWFSTQTN--TRFEPVSQRTGGMGGGAAGNLLLM----- 188
++ + + P I P L W+ + +++ +S G A LM
Sbjct: 333 VASYTKVFFEPAIIPGYADLTAWWEAAKDNPSQWHLLSTSCSADGTIALAACSLMTAPPI 392
Query: 189 ---REIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKV----IDQNNGMY 241
++ + L KA + G + + + + TY C + DCN+KV +D NN Y
Sbjct: 393 VNIHQVHAECLDQAAKAMTFHIAGTLDINKQCSVTYAGCATLDCNRKVHQSFLDPNNLHY 452
Query: 242 RCEKCNKEFNTFTYRLILPVMIGD 265
C + F+ + L I D
Sbjct: 453 HCPTGKQSFSVPIAKYCLSFTIID 476
>gi|242047974|ref|XP_002461733.1| hypothetical protein SORBIDRAFT_02g007190 [Sorghum bicolor]
gi|241925110|gb|EER98254.1| hypothetical protein SORBIDRAFT_02g007190 [Sorghum bicolor]
Length = 735
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 95/434 (21%), Positives = 164/434 (37%), Gaps = 89/434 (20%)
Query: 382 LNIIKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAA-TNTNGSNGVHNNVAIPRQASAPVV 440
LN++ PG E+ + + T+T N + P N+ +N H V + Q
Sbjct: 183 LNLL-PGNEVEYYSADSISKCTDTCNDADILYPIEYLNSLSANKFHCIVELTMQG----- 236
Query: 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGK----LFSIDLLDESGEIRATMF 496
+ P+ L P + I RV+ R W S K F + ++D+ G
Sbjct: 237 KRTPLSELRPMNTMYNIHVRVS-----RTWEYRGKSEKNPLIHFDMVVIDQKGYAMYCEV 291
Query: 497 NDEC-NRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNM 555
+ E +E+ KV YI ++ A + ++ Y + T + N ++ +
Sbjct: 292 SPEVLPHMKQYLEEGKVLYIWKACVERAKPGYRVVDAPYMLKLIMRTEIFEGNSNDT-SF 350
Query: 556 PSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQAS 615
P KY ++ N+DV+G I A ++V T+ M+R ITL D +
Sbjct: 351 P--KY--------HDLQSFLNVDVIGK-ITAISNAAVARNTSGDLMMRRLITLQDHKGNT 399
Query: 616 VTMTLWGKEAETFDAS-------NKPVIAV-------------------KAARVSEFQGN 649
+ ++L G+ A FDA N VIA+ A R + +
Sbjct: 400 IDLSLSGQRALEFDAEAVFDIGQNHHVIAIFVGTLMKIYREDYKFLSGTSACRWYINEND 459
Query: 650 LLLMR-----------EIQDQQL--------GMGDK-----------ADYCSVRGIIQVF 679
+ MR IQ QL G+ +K D C+V +I +
Sbjct: 460 IPAMRTFQRGLPYQVTPIQKLQLQSEDYMEQGVEEKTLFDLKHIDPLTDKCTV-TLISLA 518
Query: 680 RGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTL 739
Y+AC + CN +I N+G Y C K + ++ + + D T S+
Sbjct: 519 EKEQWCYRAC--KVCNSTLILGNDG-YDCTKDGCSCKQYDWKYKVCFIAADDTYSLQFMF 575
Query: 740 FQNEAESILGVTAQ 753
F+ + ++G +A+
Sbjct: 576 FEKKGVELIGKSAE 589
Score = 43.9 bits (102), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 99/241 (41%), Gaps = 23/241 (9%)
Query: 59 NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDAS---- 114
N+DV+G I A ++V T+ M+R ITL D ++ ++L G+ A FDA
Sbjct: 361 NVDVIGK-ITAISNAAVARNTSGDLMMRRLITLQDHKGNTIDLSLSGQRALEFDAEAVFD 419
Query: 115 ---NKPVIAVKAARVSEF--QGGKTLSLSMSSVLSLNP-DIPECHKLQGWFSTQTNTRFE 168
N VIA+ + + + K LS + + +N DIP Q Q +
Sbjct: 420 IGQNHHVIAIFVGTLMKIYREDYKFLSGTSACRWYINENDIPAMRTFQRGLPYQVTPIQK 479
Query: 169 PVSQRTGGMGGGAAGNLLL-MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQ 227
Q M G L ++ I D C+V +I + Y+AC +
Sbjct: 480 LQLQSEDYMEQGVEEKTLFDLKHIDPL-------TDKCTV-TLISLAEKEQWCYRAC--K 529
Query: 228 DCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTA 287
CN +I N+G Y C K + ++ + + D T S+ F+ + ++G +A
Sbjct: 530 VCNSTLILGNDG-YDCTKDGCSCKQYDWKYKVCFIAADDTYSLQFMFFEKKGVELIGKSA 588
Query: 288 Q 288
+
Sbjct: 589 E 589
>gi|87241182|gb|ABD33040.1| Nucleic acid-binding, OB-fold, subgroup [Medicago truncatula]
Length = 224
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 98/220 (44%), Gaps = 37/220 (16%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREW--NNARGSGKLFSIDL--LDESGE-IRATMFNDE 499
I ++SP + WT+ RV +R W N + FS++L +D G+ I A++
Sbjct: 8 ISNVSPRKQSWTLVVRV-----VRAWFGQNYKNKKLPFSMELVLIDRKGDRIGASIRRTL 62
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK 559
+F + +++ V+ IS+ + + N+Y+++FT +T V + +P+
Sbjct: 63 IYKFKNQLQEGMVFTISSFNVASNIGSYRPSRNEYKLNFTINTKV---KLSKTVLVPTNV 119
Query: 560 YCFVPLKTIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVT 617
Y F P + S D N +DV+GV I G +K Y +RD T
Sbjct: 120 YSFTPAPNVFNESYDNNYLVDVIGVMI---------GVGVEKEY-ERDGTY------RFK 163
Query: 618 MTLWGKEAETFDA------SNKPVIAVKAARVSEFQGNLL 651
TL+G+ E ++ S V+A+ +V FQ L+
Sbjct: 164 CTLFGEYVEELNSFLSSGESQNVVVAIMLTKVKLFQAFLV 203
>gi|357509383|ref|XP_003624980.1| hypothetical protein MTR_7g089660 [Medicago truncatula]
gi|355499995|gb|AES81198.1| hypothetical protein MTR_7g089660 [Medicago truncatula]
Length = 236
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 98/220 (44%), Gaps = 37/220 (16%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREW--NNARGSGKLFSIDL--LDESGE-IRATMFNDE 499
I ++SP + WT+ RV +R W N + FS++L +D G+ I A++
Sbjct: 8 ISNVSPRKQSWTLVVRV-----VRAWFGQNYKNKKLPFSMELVLIDRKGDRIGASIRRTL 62
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK 559
+F + +++ V+ IS+ + + N+Y+++FT +T V + +P+
Sbjct: 63 IYKFKNQLQEGMVFTISSFNVASNIGSYRPSRNEYKLNFTINTKV---KLSKTVLVPTNV 119
Query: 560 YCFVPLKTIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVT 617
Y F P + S D N +DV+GV I G +K Y +RD T
Sbjct: 120 YSFTPAPNVFNESYDNNYLVDVIGVMI---------GVGVEKEY-ERDGTY------RFK 163
Query: 618 MTLWGKEAETFDA------SNKPVIAVKAARVSEFQGNLL 651
TL+G+ E ++ S V+A+ +V FQ L+
Sbjct: 164 CTLFGEYVEELNSFLSSGESQNVVVAIMLTKVKLFQAFLV 203
>gi|242089441|ref|XP_002440553.1| hypothetical protein SORBIDRAFT_09g003015 [Sorghum bicolor]
gi|241945838|gb|EES18983.1| hypothetical protein SORBIDRAFT_09g003015 [Sorghum bicolor]
Length = 156
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 9/157 (5%)
Query: 437 APVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDL--LDESG-EIRA 493
+P + + +L P Q + TI RV K E++ G + +DL LDE G +
Sbjct: 1 SPTMAFDLLPALRPRQWRSTICVRVCRKW---EYHGGTDDGPIQHVDLVLLDEQGNSMYG 57
Query: 494 TMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVG 553
+ E ++E+ +Y IS + A + +++ Y + FT TT+ D +
Sbjct: 58 EIPQQEVETKSPLLEEGGIYIISRFRVSNAKSGYRPVDSPYMVEFTLHTTISAAKTDLLA 117
Query: 554 NMPSVKYCFVPLKTIAEISPDEN--IDVLGVCIDAAE 588
P Y P+ +A + D +D +GV ++ +E
Sbjct: 118 -FPQYAYKITPIDALATHAGDTKNFLDTIGVLVEVSE 153
>gi|358343841|ref|XP_003636004.1| Replication protein A1-like protein [Medicago truncatula]
gi|355501939|gb|AES83142.1| Replication protein A1-like protein [Medicago truncatula]
Length = 540
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 18/179 (10%)
Query: 455 WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNRFHDMIEKDKVY 513
W + +VT+K W+ + + + ++D G +I+ + + +I+ + Y
Sbjct: 18 WKVAVKVTDK-----WSVVKDGMEHMEMVIVDAKGTDIQVIIPTAYRAEYEKLIKVNSTY 72
Query: 514 YISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI--AEI 571
+SN + P + F + +N Y++ +T TT + N V ++P F PL I +
Sbjct: 73 TLSNFQVFPNDLVFKASDNKYKLKWTGGTTAVDAN---VHDIPLPNMKFKPLAEIIAGKW 129
Query: 572 SPDENIDVLGVC--IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETF 628
D + V+G I ++ + TGK Q ++ +D+ S S+ TLW A F
Sbjct: 130 RADLLVHVIGYVHEIGYCQVMAGTGKKLQVNFLMKDL-----SDISLNCTLWEDYAAKF 183
>gi|52076459|dbj|BAD45339.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 457
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 17/172 (9%)
Query: 467 IREWN----NARGSGKLFSID--LLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTL 520
IR W+ ++ + L SID LLDE T+ +F ++ K VY ISN
Sbjct: 25 IRLWDAINMRSKSADPLISIDGILLDE----HITVPKRFAKQFRPLLNKGSVYLISNTVA 80
Query: 521 KPANKKFSSIN-NDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI--AEISPDENI 577
A +K + +Y + F H T + P E +P + F P + IS I
Sbjct: 81 IDAKRKTNIYQCQNYILQFKHDTRIQPL-ESRGLTIPKFFFDFCPFDEVLGKNISSKPLI 139
Query: 578 DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD 629
D++GV V+ +++K R I + + + + + LWG+ E+F+
Sbjct: 140 DLIGVISYIGPYDFVSPTSDKKL---RRIKIQNLEEQTQDVLLWGQYGESFN 188
>gi|294876753|ref|XP_002767785.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239869630|gb|EER00503.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 143
Score = 45.1 bits (105), Expect = 0.14, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 426 HNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL 485
H A R+ S P +T I +L W ++ RV +K+ I +G+LF +
Sbjct: 17 HPRRASVRRTSQPYSRTL-ISNLRVGSTDWCLRGRVVSKSEIF----GISTGELFHAHIS 71
Query: 486 DE-SGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTV 544
DE S ++ F++ + FHD I+ +YY N + A+ KF+ D E+ F S +
Sbjct: 72 DEDSNTVKLLFFDEAAHIFHDSIQIGAIYYFRNGKVLRAHSKFNK-EADVEIKFDTSAVI 130
>gi|388496496|gb|AFK36314.1| unknown [Lotus japonicus]
Length = 242
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 42/219 (19%)
Query: 452 QNKWTIKARVTNKTPIREWNNARGSG-KL-FSIDL--LDESG-EIRATMFNDECNRFHDM 506
++ W I +V +R W + SG KL FS++L +D G +I A++ RFH +
Sbjct: 15 KDTWNIVTKV-----VRLWVSPSFSGGKLPFSMELVLMDSKGCQIHASVRKTLVYRFHPL 69
Query: 507 IEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK--YCFVP 564
+ + +VY IS + F + + ++++F T V E+GN P K Y F+
Sbjct: 70 LTEGRVYQISYFGVGDNLGDFRTTTHQFKINFHIHTKV-----KEIGNCPITKSPYSFIS 124
Query: 565 LKTIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQKTY------MKRDITLVDQSQASV 616
L I PD + +D++G+ +TG + ++ Y KR + Q +
Sbjct: 125 LSEIMFNDPDPSYLMDIIGI---------LTGSSGEQEYEKDGKIQKRVTIELFQDGVRL 175
Query: 617 TMTLWGK-------EAETFDASNKPVIAVKAARVSEFQG 648
+G + D +N V+ V+ A++ F+G
Sbjct: 176 ECAFFGNYVGQILGQLAAGDMTNA-VVVVQYAKIKPFRG 213
>gi|302823886|ref|XP_002993591.1| hypothetical protein SELMODRAFT_431648 [Selaginella moellendorffii]
gi|300138603|gb|EFJ05366.1| hypothetical protein SELMODRAFT_431648 [Selaginella moellendorffii]
Length = 160
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 188 MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKAC----PSQDCNKKVIDQNNGMYRC 243
+ EI + QL + + + V ++ + Y AC ++ C KK +G + C
Sbjct: 38 LSEISNMQLKVLESSPIYRVIATVKEMKTDEFYYNACINVVNARQCGKKTTRTADGWF-C 96
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG 291
CN E ++ L + I D ++ VW FQ + I+G++A+E+
Sbjct: 97 NYCNFESANMEFKYALKMCIEDSSSHVWAIAFQEATQEIVGMSAKELA 144
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 653 MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKAC----PSQDCNKKVIDQNNGMYRC 708
+ EI + QL + + + V ++ + Y AC ++ C KK +G + C
Sbjct: 38 LSEISNMQLKVLESSPIYRVIATVKEMKTDEFYYNACINVVNARQCGKKTTRTADGWF-C 96
Query: 709 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVG 756
CN E ++ L + I D ++ VW FQ + I+G++A+E+
Sbjct: 97 NYCNFESANMEFKYALKMCIEDSSSHVWAIAFQEATQEIVGMSAKELA 144
>gi|389851474|ref|YP_006353708.1| replication factor A complex, RPA41 subunit [Pyrococcus sp. ST04]
gi|388248780|gb|AFK21633.1| putative replication factor A complex, RPA41 subunit [Pyrococcus
sp. ST04]
Length = 351
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 12/105 (11%)
Query: 199 GDKADYCSVRGII-QVFRGSNTTYKACPSQDCNKKV-IDQNNGMYRC-EKCNKEFNTFTY 255
GD+ + VRG I +V+R Y ACP +C KKV D G++ C E E T
Sbjct: 189 GDR--FVEVRGTIAKVYR--VLVYDACP--ECKKKVDYDPGMGVWICPEHGEVEPIKIT- 241
Query: 256 RLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPAL 300
IL + D T + VTLF ++AE +LGV+ E+ E + ++
Sbjct: 242 --ILDFGLDDGTGYIRVTLFGDDAEELLGVSPNEISEKIREMESM 284
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 12/105 (11%)
Query: 664 GDKADYCSVRGII-QVFRGSNTTYKACPSQDCNKKV-IDQNNGMYRC-EKCNKEFNTFTY 720
GD+ + VRG I +V+R Y ACP +C KKV D G++ C E E T
Sbjct: 189 GDR--FVEVRGTIAKVYR--VLVYDACP--ECKKKVDYDPGMGVWICPEHGEVEPIKIT- 241
Query: 721 RLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPAL 765
IL + D T + VTLF ++AE +LGV+ E+ E + ++
Sbjct: 242 --ILDFGLDDGTGYIRVTLFGDDAEELLGVSPNEISEKIREMESM 284
>gi|336121122|ref|YP_004575897.1| OB-fold tRNA/helicase-type nucleic acid binding protein
[Methanothermococcus okinawensis IH1]
gi|334855643|gb|AEH06119.1| nucleic acid binding OB-fold tRNA/helicase-type
[Methanothermococcus okinawensis IH1]
Length = 641
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 23/187 (12%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGS-GKLFSIDLLDESGEIRATMFNDECNRF 503
I ++ Q I ++ + + +RE++ G+ GK+ SI + D +G IR T++ND+ +
Sbjct: 63 IKDIAEGQRNVEITGKIMDISDVREFSRKDGTKGKVRSIIVADNTGSIRLTLWNDKADLV 122
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+++ +K V I+N + N K +N+ +++ T N DE P VK C+
Sbjct: 123 NNL-KKGDVVEITNAFSRKWNNKI-ELNSGSDLTITKIE-----NYDE-SKYPVVKECY- 173
Query: 564 PLKTIAEISPDENIDVLGVCI---DAAELSSVTGKTNQ-KTYMKRDITLVDQSQASVTMT 619
I+E++P+ + G I D E G T + K+++ +D T ++ T
Sbjct: 174 ---NISELTPNMPATIRGEIIASYDKREFPRKDGTTGRVKSFILKDDT------GTIRGT 224
Query: 620 LWGKEAE 626
LW AE
Sbjct: 225 LWDDLAE 231
>gi|357470779|ref|XP_003605674.1| hypothetical protein MTR_4g036240 [Medicago truncatula]
gi|355506729|gb|AES87871.1| hypothetical protein MTR_4g036240 [Medicago truncatula]
Length = 393
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 93/223 (41%), Gaps = 36/223 (16%)
Query: 194 QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTF 253
QQ GM Y + + Q+ N Y AC CNK V GM+ CEKCN+
Sbjct: 116 QQEGM-----YVVLGTVKQIVNPENWYYTACM---CNKSVYPAE-GMHFCEKCNRHVVKV 166
Query: 254 TYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQ------ 307
R + V + D ++ LF +A + + ++ E+ H A + L T+
Sbjct: 167 FPRYSIKVRVVDDSDCATFVLFDRDATMLFNKSCADILET---HRADEGVLPTEIAALVN 223
Query: 308 --YIFRLRAK------LEHYNGTKKI-PDGVNINSFAML-----ATQLNDIITDGTLSEF 353
Y+F++ K E KK+ DGV IN F AT + + G+LS
Sbjct: 224 CTYLFKVEFKTAISPRFEQSFRVKKVCTDGVIINQFKAKWAKEEATFIKNTNEMGSLSSL 283
Query: 354 TIVQIKRYIVSGVSSGSATNRSVL---IILELNIIKPGTEIGF 393
+ + K +V G SS + + L I + NII GT IG
Sbjct: 284 -LDKGKDVLVVGSSSVQSHDLGSLSETIDKDKNIIVEGTPIGI 325
>gi|308081030|ref|NP_001182790.1| uncharacterized protein LOC100500983 [Zea mays]
gi|195623976|gb|ACG33818.1| hypothetical protein [Zea mays]
Length = 305
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 17/194 (8%)
Query: 448 LSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL---DESGEIRATMFNDECNRFH 504
L+P++ I+ V+ K R A SG L +D++ E I + + +
Sbjct: 9 LAPHKIHAKIQVHVSRKWLFR---GATDSGPLQHVDMVLSDREGNAIYVEIPGNLAEQKA 65
Query: 505 DMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV- 563
IE+ VY IS + A F ++ D + FT T V V + P+ +V
Sbjct: 66 TNIEEGGVYDISRFRVCAAKTVFKIVDGDKMIQFTFHTIV-----KRVTSPPTTFPLYVY 120
Query: 564 PLKTIAEISP-----DENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM 618
L + I P + +DVLGV + EL+ V ++ + R I + D S ++ +
Sbjct: 121 RLTSFDLIEPHVQTTNNFVDVLGVITEIHELTPVHVRSQLTQTVTRTIIIEDLSNKTMKI 180
Query: 619 TLWGKEAETFDASN 632
TLW +A F+ +
Sbjct: 181 TLWADQAIMFNLHD 194
Score = 43.5 bits (101), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 60 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA------ETFDA 113
+DVLGV + EL+ V ++ + R I + D S ++ +TLW +A + +DA
Sbjct: 139 VDVLGVITEIHELTPVHVRSQLTQTVTRTIIIEDLSNKTMKITLWADQAIMFNLHDVYDA 198
Query: 114 -SNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPEC 152
+NK ++ + + +F G LS + NP IPE
Sbjct: 199 NTNKLILVLFVGCLPKFFKGVYLSGGPACRWYFNPTIPEA 238
>gi|413947042|gb|AFW79691.1| hypothetical protein ZEAMMB73_552852 [Zea mays]
Length = 378
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 21/128 (16%)
Query: 47 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTN-QKTY-----------MKRDITLVDQ 94
PL+ I I DE + +L + D L T T+ TY + +DI + D
Sbjct: 36 PLRHINLILADEQLTLLRIS-DVYTLQHTTYYTHFANTYYITHAGYNNSSIVKDIFIKDI 94
Query: 95 SQASVTMTLWGKEAETFDASN--------KPVIAVKAARVSEFQGGKTLSLSMSSVLSLN 146
S AS+ +TLWG +A F N VI +F+G LS + ++ N
Sbjct: 95 SDASLKITLWGDQASGFSIDNVCNQSNNKSIVIMFVGCLAKQFKGQSYLSGTTTTTWYFN 154
Query: 147 PDIPECHK 154
P+IPE +
Sbjct: 155 PNIPEAQE 162
>gi|356927738|gb|AET42528.1| hypothetical protein EXVG_00343 [Emiliania huxleyi virus 202]
Length = 201
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 476 SGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYE 535
+G + + DESG I T +ND ++F +IE++K Y IS T+K AN + + + +E
Sbjct: 133 NGFMCKFRIQDESGNIGMTAWNDTYDKFDQLIEQNKTYVISGMTVKKANPAYET-QHTHE 191
Query: 536 MSFTHSTTV 544
++ ++TV
Sbjct: 192 ITLKSTSTV 200
>gi|302143227|emb|CBI20522.3| unnamed protein product [Vitis vinifera]
Length = 78
Score = 44.7 bits (104), Expect = 0.22, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 10/78 (12%)
Query: 74 SVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ETFDASNK-PVIAVKAARVS 127
S+ K+N+ KRDIT+ D+++ SV ++LW E D ++K P++A+K+ +V
Sbjct: 2 SIRRKSNKDIVPKRDITIADKTKKSVVVSLWNDHGTNVGQELLDNADKFPIVAIKSLKVG 61
Query: 128 EFQGGKTLSLSMSSVLSL 145
E G+ L L + SVL L
Sbjct: 62 E---GRVL-LGLISVLHL 75
Score = 43.1 bits (100), Expect = 0.61, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 8/68 (11%)
Query: 591 SVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ETFDASNK-PVIAVKAARVS 644
S+ K+N+ KRDIT+ D+++ SV ++LW E D ++K P++A+K+ +V
Sbjct: 2 SIRRKSNKDIVPKRDITIADKTKKSVVVSLWNDHGTNVGQELLDNADKFPIVAIKSLKVG 61
Query: 645 EFQGNLLL 652
E G +LL
Sbjct: 62 E--GRVLL 67
>gi|77552759|gb|ABA95556.1| hypothetical protein LOC_Os11g47400 [Oryza sativa Japonica Group]
Length = 296
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 229 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 288
CNK VI Q N Y C CNK T R L + I D T S T+F + A+S+L
Sbjct: 36 CNKIVI-QKNDKYHCRNCNKYPENTTPRYRLRLQISDHTTSTSCTIFDDVAQSMLETPVS 94
Query: 289 EV-----GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFA---MLATQ 340
+ G++ E +++ Q IF+ KL N T+ P+ V +F ML Q
Sbjct: 95 SLLNLLDGKNDEIPNIIQQLCGKQLIFKF--KLSEQNLTEGTPNYVVKKTFVPDYMLEKQ 152
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 694 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 753
CNK VI Q N Y C CNK T R L + I D T S T+F + A+S+L
Sbjct: 36 CNKIVI-QKNDKYHCRNCNKYPENTTPRYRLRLQISDHTTSTSCTIFDDVAQSMLETPVS 94
Query: 754 EV-----GESTEDHPALKKALFTQYIFRLR 778
+ G++ E +++ Q IF+ +
Sbjct: 95 SLLNLLDGKNDEIPNIIQQLCGKQLIFKFK 124
>gi|357464609|ref|XP_003602586.1| hypothetical protein MTR_3g095950 [Medicago truncatula]
gi|355491634|gb|AES72837.1| hypothetical protein MTR_3g095950 [Medicago truncatula]
Length = 203
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 38/220 (17%)
Query: 443 HPIVS-LSPYQNKWTIKARVTNKTPIREW--NNARGSGKLFSIDL--LDESGE-IRATMF 496
H +S +SP + WT+ RV +R W + + FS++L +D G+ I A++
Sbjct: 5 HNFISNVSPRKQSWTLVVRV-----VRAWFGQDYKNKKLPFSMELVLIDRKGDRIGASIR 59
Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
+F + +++ V+ IS+ + + N+Y+++FT +T V V P
Sbjct: 60 RTLIYKFKNQLQEGMVFTISSFNVASNIGSYRPSRNEYKLNFTINTKVKLSKTVLV---P 116
Query: 557 SVKYCFVPLKTIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA 614
+ Y F P + S D N +DV+GV I G +K Y +RD T
Sbjct: 117 TNVYSFTPAPDVFNESYDNNYLVDVIGVMI---------GVGVEKEY-ERDGTY------ 160
Query: 615 SVTMTLWGKEAETFDA------SNKPVIAVKAARVSEFQG 648
TL+G+ E ++ S V+A+ +V FQG
Sbjct: 161 RFKCTLFGEYVEELNSFLSSGESQNVVVAIMLTKVKLFQG 200
>gi|388495040|gb|AFK35586.1| unknown [Lotus japonicus]
Length = 333
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 18/176 (10%)
Query: 487 ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIP 546
+ G+I+A++ ++ D + VY I + PA + + N+ Y + F+ T V+P
Sbjct: 11 QEGKIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVP 70
Query: 547 CNEDEVGNMPSVKYCFV---PLKTIAEISPDENIDVLGVCIDAAELS-SVTGKTNQKTYM 602
E ++P + V L+TIA+ S D +DV+G + + V G ++ K M
Sbjct: 71 L---ECESIPRLGLSLVTPLQLETIADPS-DHLVDVVGFLTAVSPVRIDVKGSSHVKIMM 126
Query: 603 KRDITLVDQSQASVTMTLWG------KEAETFDASNKPVIAVKAARVSEFQGNLLL 652
+ L D++ S++ + G + + + KP++ V+ A++ +F+G LL
Sbjct: 127 ---MELYDEN-GSMSFVVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEGKNLL 178
>gi|297722237|ref|NP_001173482.1| Os03g0429900 [Oryza sativa Japonica Group]
gi|255674608|dbj|BAH92210.1| Os03g0429900 [Oryza sativa Japonica Group]
Length = 187
Score = 44.3 bits (103), Expect = 0.27, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 17/123 (13%)
Query: 457 IKARVTNKTPIREWN--NARGSGKLFSIDL--LDESG-EIRATMFNDECNRFHDMIEKDK 511
I ARV+ R WN + K+F DL LDE G I A ++ + +++++K
Sbjct: 18 ILARVS-----RLWNFTDLNNHTKIFHTDLVLLDEMGTSIHAQIYPPITEKMKPLLKEEK 72
Query: 512 VYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVG---NMPSVKYCFVPLKTI 568
VYYI + T++ AN+ + + N+ + F+ TT+ E+ + + P + + P + +
Sbjct: 73 VYYIDSFTVRAANRTYRPVANNLMILFSKWTTL----EEHINVPPHFPGITFSLTPFEDV 128
Query: 569 AEI 571
+
Sbjct: 129 PSL 131
>gi|242085936|ref|XP_002443393.1| hypothetical protein SORBIDRAFT_08g018773 [Sorghum bicolor]
gi|241944086|gb|EES17231.1| hypothetical protein SORBIDRAFT_08g018773 [Sorghum bicolor]
Length = 389
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 11/180 (6%)
Query: 467 IREW----NNARGSGKLFSIDLLDESGE-IRATMFNDECNRFHDMIEKDKVYYISNCTLK 521
+R+W N GS + + L DE G I + + + +++ D Y I +K
Sbjct: 31 MRKWTYDGNETGGSIRYIGLVLADEKGNAIYGHIIERDVHTKGPLLQLDSTYLIRKFYVK 90
Query: 522 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN--IDV 579
+ + Y + FT TTV P E+ + P Y P I + P IDV
Sbjct: 91 TSKSTYVLFEKKYMIEFTSFTTVTPA-ENPPDSFPKYVYNITPYSEINPVYPSSTKYIDV 149
Query: 580 LGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD-ASNKPVIAV 638
LG+ + K ++ R+I + D + + ++ + + D AS++PV+ +
Sbjct: 150 LGIVTSVDNVVDQRVKNKERVIPMREILIKDLNLKKNHVPIY--QPQPLDPASHEPVLPI 207
>gi|296089493|emb|CBI39312.3| unnamed protein product [Vitis vinifera]
Length = 156
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 38 MPSVKYCFVPLKTIAE-ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ 96
+P K+ FV ++ + ++ E +DV GV + S+ K+N + KRDIT+ D+++
Sbjct: 81 IPEAKFKFVDIEELGPYVNGKELVDVSGVVQSVSPTMSIRRKSNNEIVPKRDITIADKTK 140
Query: 97 ASVTMTLWGKEA 108
SV ++LW A
Sbjct: 141 KSVVVSLWNDHA 152
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 555 MPSVKYCFVPLKTIAE-ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ 613
+P K+ FV ++ + ++ E +DV GV + S+ K+N + KRDIT+ D+++
Sbjct: 81 IPEAKFKFVDIEELGPYVNGKELVDVSGVVQSVSPTMSIRRKSNNEIVPKRDITIADKTK 140
Query: 614 ASVTMTLWGKEA 625
SV ++LW A
Sbjct: 141 KSVVVSLWNDHA 152
>gi|357510051|ref|XP_003625314.1| hypothetical protein MTR_7g093810 [Medicago truncatula]
gi|355500329|gb|AES81532.1| hypothetical protein MTR_7g093810 [Medicago truncatula]
Length = 203
Score = 44.3 bits (103), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 38/220 (17%)
Query: 443 HPIVS-LSPYQNKWTIKARVTNKTPIREW--NNARGSGKLFSIDL--LDESGE-IRATMF 496
H +S +SP + WT+ RV +R W + + FS++L +D G+ I A++
Sbjct: 5 HNFISNVSPRKQSWTLVVRV-----VRAWFGQDYKNKKLPFSMELVLIDRKGDRIGASIR 59
Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
+F + +++ V+ IS+ + + N+Y+++FT +T V V P
Sbjct: 60 RTLIYKFKNQLQERMVFTISSFNVASNIGSYRPSRNEYKLNFTINTKVKLSKTVLV---P 116
Query: 557 SVKYCFVPLKTIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA 614
+ Y F P + S D N +DV+GV I G +K Y +RD T
Sbjct: 117 TNVYSFTPAPDVFNESYDNNYLVDVIGVMI---------GVGVEKEY-ERDGTY------ 160
Query: 615 SVTMTLWGKEAETFDA------SNKPVIAVKAARVSEFQG 648
TL+G+ E ++ S V+A+ +V FQG
Sbjct: 161 RFKCTLFGEYVEELNSFLSSGESQNVVVAIMLTKVKLFQG 200
>gi|296089491|emb|CBI39310.3| unnamed protein product [Vitis vinifera]
Length = 232
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 38 MPSVKYCFVPLKTIAE-ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ 96
+P K+ FV ++ + ++ E +DV GV + S+ K+N + KRDIT+ D+++
Sbjct: 157 IPEAKFKFVDIEELGPYVNGKELVDVSGVVQSVSPTMSIRRKSNNEIVPKRDITIADKTK 216
Query: 97 ASVTMTLWGKEA 108
SV ++LW A
Sbjct: 217 KSVVVSLWNDHA 228
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 555 MPSVKYCFVPLKTIAE-ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ 613
+P K+ FV ++ + ++ E +DV GV + S+ K+N + KRDIT+ D+++
Sbjct: 157 IPEAKFKFVDIEELGPYVNGKELVDVSGVVQSVSPTMSIRRKSNNEIVPKRDITIADKTK 216
Query: 614 ASVTMTLWGKEA 625
SV ++LW A
Sbjct: 217 KSVVVSLWNDHA 228
>gi|357459973|ref|XP_003600268.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
gi|355489316|gb|AES70519.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
Length = 437
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 93/222 (41%), Gaps = 36/222 (16%)
Query: 194 QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTF 253
QQ GM Y + + Q+ N Y AC CNK V GM+ CEKCN+
Sbjct: 50 QQEGM-----YVVLGTVKQIVNPENWYYTACM---CNKSVYPAE-GMHFCEKCNRHVVKV 100
Query: 254 TYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQ------ 307
R + V + D ++ LF +A + + ++ E+ H A + L T+
Sbjct: 101 FPRYSIKVRVVDDSDCATFVLFDRDATMLFNKSCADILET---HRADEGVLPTEIGALVN 157
Query: 308 --YIFRLRAK------LEHYNGTKKI-PDGVNINSFAML-----ATQLNDIITDGTLSEF 353
Y+F++ K E KK+ DGV IN F AT + + G+LS
Sbjct: 158 CTYLFKVEFKTAISPRFEQSFRVKKVCTDGVIINQFKAKWAKEEATFIKNTNEMGSLSSL 217
Query: 354 TIVQIKRYIVSGVSSGSATNRSVL---IILELNIIKPGTEIG 392
+ + K +V G SS + + L I + NII GT IG
Sbjct: 218 -LDKGKDMLVVGSSSVQSHDLGSLSETIDKDKNIIVEGTPIG 258
>gi|321459823|gb|EFX70872.1| hypothetical protein DAPPUDRAFT_327745 [Daphnia pulex]
Length = 159
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 31/137 (22%)
Query: 30 CNED-EVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRD 88
N+D EV P++ + FVP + + D +DV+G+ + E+ V +K
Sbjct: 52 LNDDGEVAEKPTITFKFVPFDQLPNLEDDSIVDVIGLVLHLQEMVLVKLSLLEK------ 105
Query: 89 ITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPD 148
+K ++A+ ++S G + L S+V+ +NPD
Sbjct: 106 ------------------------VEDKCIVALSGVKISNKFGRRYLETLSSTVVQVNPD 141
Query: 149 IPECHKLQGWFSTQTNT 165
+ E +L+ W+ + N
Sbjct: 142 MSEARELREWYYNRRNV 158
>gi|5732052|gb|AAD48951.1|AF147262_14 contains similarity to Oryza sativa replication protein A1
(GB:AF009179) [Arabidopsis thaliana]
gi|7267341|emb|CAB81115.1| AT4g07450 [Arabidopsis thaliana]
Length = 439
Score = 43.9 bits (102), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 113/311 (36%), Gaps = 53/311 (17%)
Query: 19 MSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI--DVLGVCIDAAELSSVT 76
+ F TTV PC D V + ++ I S + NI +V+G +D +++ +
Sbjct: 21 IGFVFKTTVSPC--DTVSD--ALFLSLAKFDVILSGSANSNILHNVMGQVVDRSKIQDLN 76
Query: 77 GKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD------ASNKPVIAVKAARVSEFQ 130
N K K D L DQ + TLWGK AE D A V ++ A+++ +
Sbjct: 77 A--NNKPTKKIDFHLRDQHDTRLACTLWGKYAEIVDQACQESADGTVVCLIRFAKINLYN 134
Query: 131 GGKTLSLSMS-SVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMR 189
K++S S S + ++P + E G F P T G G L R
Sbjct: 135 DTKSVSNSFDVSQVFVDPTLAEL----GLFKQSI-----PTDGLTLGSSGSFHKRLYAPR 185
Query: 190 EIQDQ-------------QLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 236
D +G C+V I + Y C + NKKV+++
Sbjct: 186 TGDDDGDYPRQTIKDVLTSSDVGKCKTVCTVSAIDTDWPW---YYFCCRAH--NKKVVEE 240
Query: 237 -----------NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGV 285
+ CE CN + L + I T LF + A+ I G
Sbjct: 241 EAIKLEDVKLPQKPRFWCEICNGFAKYVVAKFWLHLHIMGQTGEARCMLFDSHAKEIFGT 300
Query: 286 TAQEVGESTED 296
A E+ + + D
Sbjct: 301 IAPELLDGSFD 311
>gi|328701214|ref|XP_003241526.1| PREDICTED: chloride channel protein 2-like [Acyrthosiphon pisum]
Length = 521
Score = 43.9 bits (102), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 455 WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYY 514
W+I ARV K+ + + + G+GK F+ L+D++ EIRAT F ++ +R ++ K Y
Sbjct: 44 WSITARVLKKSDVLPFKH--GNGKYFTTILIDKTTEIRATAFGNDVDRLFSQLQDVK-YV 100
Query: 515 ISNCTLK 521
I N ++
Sbjct: 101 ICNTEIR 107
>gi|424812470|ref|ZP_18237710.1| replication factor-A C terminal domain, OB-fold nucleic acid
binding domain family protein [Candidatus Nanosalinarum
sp. J07AB56]
gi|339756692|gb|EGQ40275.1| replication factor-A C terminal domain, OB-fold nucleic acid
binding domain family protein [Candidatus Nanosalinarum
sp. J07AB56]
Length = 338
Score = 43.9 bits (102), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 97/218 (44%), Gaps = 33/218 (15%)
Query: 89 ITLVDQSQASVTMTLWGKEAE-TFDASNKPVIAVKAA-RVSEFQGGKTLSLSMSSVLSLN 146
+TL D++ +V M+LW ++ E T I + A V + QG L L + +S+
Sbjct: 104 LTLGDET-GTVRMSLWDEQVEMTEKIEEGDTIGIAGAYTVEDNQGNAELRLGDDAKVSM- 161
Query: 147 PDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCS 206
D E ++Q S T + V R G+ M + +Y +
Sbjct: 162 VDEEEVGEVQRSSSGSTQGQASEVMCR--GV--------------------MNENTNY-T 198
Query: 207 VRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDW 266
V+G++ S+ Y+ P + + V + ++G + + K YRL +P +I D
Sbjct: 199 VKGMVVAVYTSSPFYRVDP--ESGESVRENDDGEHVTD-SGKVVEDPGYRLAVPAVIDDG 255
Query: 267 TNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKAL 304
T+++ FQ A+ +L + ++VG DH A++KA+
Sbjct: 256 TDNIRAIFFQERAKQLLDLEGEDVG---GDHKAIEKAV 290
Score = 42.7 bits (99), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 671 SVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGD 730
+V+G++ S+ Y+ P + + V + ++G + + K YRL +P +I D
Sbjct: 198 TVKGMVVAVYTSSPFYRVDP--ESGESVRENDDGEHVTD-SGKVVEDPGYRLAVPAVIDD 254
Query: 731 WTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKAL 769
T+++ FQ A+ +L + ++VG DH A++KA+
Sbjct: 255 GTDNIRAIFFQERAKQLLDLEGEDVG---GDHKAIEKAV 290
>gi|357459981|ref|XP_003600272.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
gi|355489320|gb|AES70523.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
Length = 701
Score = 43.9 bits (102), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 93/222 (41%), Gaps = 36/222 (16%)
Query: 194 QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTF 253
QQ GM Y + + Q+ N Y AC CNK V GM+ CEKCN+
Sbjct: 424 QQEGM-----YVVLGTVKQIVNPENWYYTACM---CNKSVYPAE-GMHFCEKCNRHVVKV 474
Query: 254 TYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQ------ 307
R + V + D ++ LF +A + + ++ E+ H A + L T+
Sbjct: 475 FPRYSIKVRVVDDSDCATFVLFDRDATMLFNKSCADILET---HRADEGVLPTEIGALVN 531
Query: 308 --YIFRLRAK------LEHYNGTKKI-PDGVNINSFAML-----ATQLNDIITDGTLSEF 353
Y+F++ K E KK+ DGV IN F AT + + G+LS
Sbjct: 532 CTYLFKVEFKTAISPRFEQSFRVKKVCTDGVIINQFKAKWAKEEATFIKNTNEMGSLSSL 591
Query: 354 TIVQIKRYIVSGVSSGSATNRSVL---IILELNIIKPGTEIG 392
+ + K +V G SS + + L I + NII GT IG
Sbjct: 592 -LDKGKDMLVVGSSSVQSHDLGSLSETIDKDKNIIVEGTPIG 632
>gi|357467297|ref|XP_003603933.1| hypothetical protein MTR_3g116750 [Medicago truncatula]
gi|355492981|gb|AES74184.1| hypothetical protein MTR_3g116750 [Medicago truncatula]
Length = 203
Score = 43.9 bits (102), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 33/215 (15%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDL--LDESGE-IRATMFNDECN 501
I ++SP + WT+ RV +++ N + FS++L +D G+ I A++
Sbjct: 8 ISNVSPRKQSWTLVVRVARAWFGQDYKNKKLP---FSMELVLIDRKGDRIGASIRRTLIY 64
Query: 502 RFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC 561
+F + +++ V+ IS+ + + N+Y+++FT +T V V P+ Y
Sbjct: 65 KFKNQLQEGMVFTISSFNVASNIGSYRPSRNEYKLNFTINTKVKLSKTVLV---PTNVYS 121
Query: 562 FVPLKTIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMT 619
F P + S D N +DV+GV I G +K Y +RD T T
Sbjct: 122 FTPAPDVFNESYDNNYLVDVIGVMI---------GVGVEKEY-ERDGTY------RFKCT 165
Query: 620 LWGKEAETFDA------SNKPVIAVKAARVSEFQG 648
L+G+ E ++ S V+A+ +V FQG
Sbjct: 166 LFGEYVEELNSFLSSGESQNVVVAIMLTKVKLFQG 200
>gi|409081933|gb|EKM82291.1| hypothetical protein AGABI1DRAFT_104332 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 255
Score = 43.9 bits (102), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 74/181 (40%), Gaps = 28/181 (15%)
Query: 485 LDESGEIRATMFND-ECNRFHDMIEKDKVYYISNCT---LKPANKKFSSINNDYEMSFTH 540
+DESGE+RA D + +D ++ KVY+I N + L ++ + + +
Sbjct: 1 MDESGEVRAEADTDFYADEIYDRLQVGKVYHIYNLSNRGLFEGRTFLFNLKDRSLLGISS 60
Query: 541 STTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI----------------DVLGVCI 584
T C+ + +P ++ F P+ + + + I DVL +
Sbjct: 61 WTMFEECSV--ISRLPQYRFSFTPIPRLVNMEVNHEITSIYDPYNDTLLTWSVDVLAIVK 118
Query: 585 DAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVS 644
D SV T + R + + DQS+ + + LW AE F A ++A + A +
Sbjct: 119 DV----SVIDDTLKIPV--RQVIIFDQSEVELLVKLWSYNAEEFVARPGDIVAFRNAHLL 172
Query: 645 E 645
E
Sbjct: 173 E 173
>gi|357444707|ref|XP_003592631.1| Replication factor A protein [Medicago truncatula]
gi|355481679|gb|AES62882.1| Replication factor A protein [Medicago truncatula]
Length = 301
Score = 43.9 bits (102), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 7/145 (4%)
Query: 484 LLDE-SGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHST 542
L+DE G I AT D +F M+++ Y + N + + ++ +++ H++
Sbjct: 38 LVDEKGGRIHATARKDLVAKFRSMVQEGGTYQLENAIVGFNESPYKVTSHKHKLKMMHNS 97
Query: 543 TVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDE-NIDVLGVCIDAAELSSVTGKTNQKTY 601
T + + P + F P I + +E + DV+G I+ ++ T K +K+
Sbjct: 98 TFTKVHSPSI---PMNVFKFKPFNEILSSTVEEVSTDVIGHVIERGDIRE-TEKDGRKSR 153
Query: 602 MKRDITLVDQSQASVTMTLWGKEAE 626
+ D+TL D + +LWGK A+
Sbjct: 154 VI-DLTLEDLENNRLHCSLWGKHAD 177
>gi|18542918|gb|AAL75753.1| Putative helicase [Oryza sativa Japonica Group]
gi|31429797|gb|AAP51799.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 1084
Score = 43.9 bits (102), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 17/123 (13%)
Query: 457 IKARVTNKTPIREWN--NARGSGKLFSIDL--LDESG-EIRATMFNDECNRFHDMIEKDK 511
I ARV+ R WN + K+F DL LDE G I A ++ + +++++K
Sbjct: 786 ILARVS-----RLWNFTDLNDDTKIFHTDLVLLDEMGTSIHAQIYPPITEKMKPLLKEEK 840
Query: 512 VYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVG---NMPSVKYCFVPLKTI 568
VYYI + T++ AN+ + + N+ + F+ TT+ E+ + + P + + P + +
Sbjct: 841 VYYIDSFTVRAANRTYRLVANNLMILFSKWTTL----EEHINVPPHFPGITFSLTPFEDV 896
Query: 569 AEI 571
+
Sbjct: 897 PSL 899
>gi|347482145|gb|AEO98086.1| hypothetical protein ELVG_00338 [Emiliania huxleyi virus 203]
gi|347601189|gb|AEP15675.1| hypothetical protein EQVG_00266 [Emiliania huxleyi virus 207]
gi|357972746|gb|AET98019.1| hypothetical protein EPVG_00131 [Emiliania huxleyi virus 201]
Length = 211
Score = 43.9 bits (102), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI + + I+ +T K R + N G + + D++G I T +ND +F
Sbjct: 115 PIAEVGTTPGNFKIQGVITFKN-CRSYKN----GFMCKFRIQDDTGNIGMTAWNDTYEQF 169
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTV 544
++E+++ Y IS T+K AN + + + +E++ H+TTV
Sbjct: 170 DQLLEQNQTYTISEMTVKKANPTYET-QHTHEITLKHTTTV 209
>gi|297720719|ref|NP_001172721.1| Os01g0932000 [Oryza sativa Japonica Group]
gi|255674031|dbj|BAH91451.1| Os01g0932000 [Oryza sativa Japonica Group]
Length = 129
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 459 ARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNC 518
ARV+ + E+ + + + K++ IDL+ ++ F ++ + KVYY+ +
Sbjct: 20 ARVSR---LWEFTDCKDATKIYHIDLVLVDEKV-----------FKPLLTEGKVYYLDSY 65
Query: 519 TLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENID 578
+K +NK + + N M+FT T+V C D N P+V Y PL ++ D+N
Sbjct: 66 RVKTSNKSYRPVANPLMMTFTKWTSVEQC-LDVPFNFPTVVYSLTPLNEVSNFV-DKNES 123
Query: 579 VLG 581
+G
Sbjct: 124 FVG 126
>gi|328703227|ref|XP_003242133.1| PREDICTED: hypothetical protein LOC100571126 [Acyrthosiphon pisum]
Length = 369
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 69/162 (42%), Gaps = 18/162 (11%)
Query: 455 WTIKARV--TNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKV 512
+ +K RV N P N SG + + D EI F + C ++ KD V
Sbjct: 18 FVVKGRVKFINVEP-----NRNSSGSHLNAIIFDNISEIEVVAFKN-CENIAKLLPKDSV 71
Query: 513 YYISNCTLKPANKKFSSINNDYEMSF-THSTTVIPCNEDEV--GNMPSVKYCF-VPLKTI 568
I N TL+ NK + + Y++ ++ V N DEV + P KY LKT
Sbjct: 72 VTIGNGTLREVNKDYKKTKHKYQIILESNDPKVQIVNNDEVNISDFPLRKYTSGADLKT- 130
Query: 569 AEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVD 610
++ IDV+GVC +V G Q+ ++R LVD
Sbjct: 131 --LTTGMIIDVIGVCTQIDNEKTVNG---QQQIIRRGNILVD 167
>gi|413937358|gb|AFW71909.1| hypothetical protein ZEAMMB73_180301 [Zea mays]
Length = 848
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 9/122 (7%)
Query: 503 FHDMIEKDKVYYISNC--TLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKY 560
F+ ++ + VY + N L P F +N E+ FTH T V P V P K+
Sbjct: 56 FNSLLHEKHVYKMHNVWFGLNPGAFNFRHLNGTMELYFTHQTIVEPY-AVPVQMPPFPKH 114
Query: 561 CFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTL 620
F+ L IAE+ +D++ + + L ++ +T T+ R I ++D + T+ +
Sbjct: 115 IFLNLDDIAELPNRTLVDIMAIVV---HLDTIH-RTMWGTF--RKIVIMDARWSLHTIKV 168
Query: 621 WG 622
WG
Sbjct: 169 WG 170
>gi|440292825|gb|ELP86002.1| hypothetical protein EIN_234190 [Entamoeba invadens IP1]
Length = 344
Score = 43.5 bits (101), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 89/210 (42%), Gaps = 20/210 (9%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATM--FNDECN 501
P ++ N TIK RV +K+ I G+ F LL ++ E T+ +++EC
Sbjct: 142 PFAVITTMTNNVTIKGRVISKSNITR--TVTGTKLCF---LLQDANENEMTVNCYDNECE 196
Query: 502 RFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC 561
+ DM + VY+I K + +++ T+ T IP E E ++PS K
Sbjct: 197 QAFDMFQVGSVYFIYCRQFKEIKSSIHLREKEIDVNMTY-TCEIPTQESE-NDIPS-KGL 253
Query: 562 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
+ + + ++ DV GV I + +VT K Y R I +VDQS + + W
Sbjct: 254 ITTISYLKNATVEKLYDVSGVVIKINKEDNVTK--GGKVY--RTILVVDQSNYIIEIKFW 309
Query: 622 GKEAETFDASNKPVIAVKAARVSEFQGNLL 651
G D S P ++ F+ LL
Sbjct: 310 G------DTSTLPDKLEMFKKIYTFRNVLL 333
>gi|110289352|gb|AAP54489.2| hypothetical protein LOC_Os10g35880 [Oryza sativa Japonica Group]
Length = 1169
Score = 43.1 bits (100), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 106/267 (39%), Gaps = 37/267 (13%)
Query: 484 LLDESGEIRATMFNDECN-RFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHST 542
L+D+ G A C+ +F ++I + KVYY+ ++ ++++ +NN + FT T
Sbjct: 377 LIDQEGTSIAAQIYPPCDLQFREIITEGKVYYLEYYRVREWSRRYRPVNNSLSICFTRWT 436
Query: 543 TVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYM 602
V D + P Y P + + D + G S++G + K Y+
Sbjct: 437 KVEQV-ADPAADFPLYTYSLTPYGGLRQ-RVDRKEEFTGDI-------SLSGNSACKWYI 487
Query: 603 KRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLG 662
+ V+ + S+ GK E P AV A R Q ++ +I+D
Sbjct: 488 NVNTPEVNSFKESIQ----GK-YEPIKMIELP--AVGAVRTGAEQKSIA---QIKDLNPF 537
Query: 663 MGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRL 722
M K ++ I ++ S+ Y AC S C++ K + +YR
Sbjct: 538 MFRKNEFMVTVVIKKIDTESSWWYPACDS----------------CKRTAKPYGK-SYRF 580
Query: 723 ILPVMIGDWTNSVWVTLFQNEAESILG 749
L ++ GD T LF A+ I+G
Sbjct: 581 KLSLIAGDDTGDTKFVLFGRTAQRIIG 607
>gi|390341544|ref|XP_003725476.1| PREDICTED: uncharacterized protein C16orf73 homolog
[Strongylocentrotus purpuratus]
Length = 834
Score = 43.1 bits (100), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 113/257 (43%), Gaps = 25/257 (9%)
Query: 58 ENIDVLGVCIDAAELSSVTGKTNQKTYMKR-DITLVDQSQASVTMTLWGKEA----ETFD 112
E+I++L + + K ++T KR +++ D++ +S +M +W +E + +
Sbjct: 532 EHINLLTLVKKVGTPKDIVTKGGRET--KRCEVSFFDETCSSFSMVIWDEEVIDLVQQWQ 589
Query: 113 ASNKPVIAVKA-ARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS 171
A + AV A+ +F+ S+ S+ +NPD E H L F + E
Sbjct: 590 AKETVIFAVDVVAKYDDFRNTMVASVDSKSIFIINPDTREAHSLYK-FGQSSTADEESAE 648
Query: 172 QRTGGMGGGAAGNLLLMREIQ----DQQLGMGDKADYCSVRGIIQVF--RGSNTTYKACP 225
+ + A ++ ++ E++ D+Q M ++DY V + + G + +
Sbjct: 649 ETKDSVDLQAIHDVYMVDELKAKMCDKQ-SMMMQSDYGIVYAFLSAYDLDGPTSAVLSMR 707
Query: 226 SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLI---LPVMIGDWT---NSVWVTLFQNEA 279
C+K+V D+ G C+ + ++ L V + D + N V+V + A
Sbjct: 708 CTSCHKRV-DKETGTCLNSNCSAAITDQSQAILNYDLRVNLSDLSGTINGVYVGGYV--A 764
Query: 280 ESILGVTAQEVGESTED 296
E I+G +A+E + +ED
Sbjct: 765 EQIIGKSAEEFSKCSED 781
>gi|321466460|gb|EFX77455.1| hypothetical protein DAPPUDRAFT_247535 [Daphnia pulex]
Length = 130
Score = 42.7 bits (99), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIV-SGVSSGSATNR---SVLIILEL 382
DG +FAML+ QLN +I DG L FT+V++ R+ V S ++ AT++ ++ + ++
Sbjct: 59 DGKYSYAFAMLSAQLNHLIADGKLEIFTVVKVVRFTVNSVIAKAPATDKVYNKIITLHDV 118
Query: 383 NIIKPGTEI 391
++ G E+
Sbjct: 119 ELLVSGKEV 127
>gi|357498603|ref|XP_003619590.1| Replication factor-a protein 1 (Rpa1) family protein [Medicago
truncatula]
gi|355494605|gb|AES75808.1| Replication factor-a protein 1 (Rpa1) family protein [Medicago
truncatula]
Length = 539
Score = 42.7 bits (99), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 93/407 (22%), Positives = 160/407 (39%), Gaps = 65/407 (15%)
Query: 37 NMPSVKYCFVPLKTIAEISP-----DENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITL 91
+ P++ K EI D IDV+G D TN+K + R +T
Sbjct: 130 DFPAIPLASFRFKDFGEILAGNYRNDLLIDVIGAFQDIT-------NTNKKGTIIRSVTF 182
Query: 92 V--DQSQASVTMTLWGKEA----ETFDASNKP---VIAVKAARVSEFQGGKTLSLSMS-- 140
+ D S + TLW + A + F +N P I +K R E QG L ++ +
Sbjct: 183 LLKDASGLMIHATLWDESAKQFFDAFSQANGPETIFIVLKHVRAREAQGIYPLCVTNTWS 242
Query: 141 -SVLSLNPDIPECHKLQGWFST----QTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQ 195
+ + +N +IPE + + F+ N + +SQ T G G++ M +
Sbjct: 243 GTKVIINAEIPEIAEFKTRFAELPIDDVNAS-QQLSQLTQGSQMTQQGDI--MNKAHFLT 299
Query: 196 LGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCN--KKVIDQNNGMYRCEKCNKEFNTF 253
L + + ++ I + N CN K + +NG +C + N +
Sbjct: 300 LSEVNHVMHETICVTIAEIKKINANKYGWIYDGCNFCTKGVRMDNGQLKC-RGNHINDEA 358
Query: 254 TYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGES-TEDHPA-----LKKALFTQ 307
R + V + L++N+ SI+G++AQE+ E E HP L + + Q
Sbjct: 359 KPRFRVEVEAVYKNDKAKFLLWENDVASIMGMSAQELKEQLVEFHPTTYPPILDQVVCPQ 418
Query: 308 YIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVS 367
+F+++A L S Q++D +G L K++ + VS
Sbjct: 419 KVFKIKACL---------------GSSPYSVIQISD--NEGLLKNLE----KQFGLGEVS 457
Query: 368 SGSATNRSVLIILELNIIKPGTEIGFKIGNPQPLNTNTDNSSTQQTP 414
S A +L ++ + +K E+ N Q L TD+S + TP
Sbjct: 458 SKLA----LLDEVKFDEVKESQELVVDTLNTQSLCDETDHSCSSATP 500
>gi|325957925|ref|YP_004289391.1| Replication factor-A domain-containing protein [Methanobacterium
sp. AL-21]
gi|325329357|gb|ADZ08419.1| Replication factor-A domain protein [Methanobacterium sp. AL-21]
Length = 793
Score = 42.7 bits (99), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 72/321 (22%), Positives = 138/321 (42%), Gaps = 52/321 (16%)
Query: 469 EWNNARGS-GKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKF 527
E+N G+ GK+ ++++ D +G IR++ ++D+ + + +K N +
Sbjct: 439 EFNRDDGTTGKVRTVEIGDGTGVIRSSFWDDKAD----------FAFNEGKPIKIENART 488
Query: 528 SSINNDYEMSFTHSTTVIPCNEDEVGNMPS---VKYCFVPLKTIAEISPDE-NIDVLGVC 583
N + ++S + ++ +E+ +PS ++ KTI++++ DE N+ ++G
Sbjct: 489 RLGNYNMDLSIGKTARIVDPTPEEIEALPSMNEIEDSLYSTKTISQLNEDERNVRIVGRV 548
Query: 584 I---DAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE----TFDAS--NKP 634
+ D E G + R + + D + + + W +AE T DA P
Sbjct: 549 VNLYDPNEFQRGDGTNG----LVRTVEIADGT-GVLRSSFWDDKAEMSLNTGDAIKIENP 603
Query: 635 VIAVKAARVSEFQG-NLLLMREIQDQQLGMGDKADY-------------------CSVRG 674
I+++ + G N L+ + D+ + D V G
Sbjct: 604 RISMRDDHLEISVGRNTLVTKATVDESEKLPSFDDIKEMIYKTKKIDDIEEEDRNIKVTG 663
Query: 675 IIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNS 734
I G+ Y+ CP+ CNK++ +N Y CE C +E Y +I+P +I D T +
Sbjct: 664 EITEAYGNRILYEMCPN--CNKRLTLIDNS-YECEICGEEIEEPRYLMIVPCVIEDSTGT 720
Query: 735 VWVTLFQNEAESILGVTAQEV 755
+ VT F AE ++G+ EV
Sbjct: 721 MRVTFFSAAAEELVGMKINEV 741
>gi|402220342|gb|EJU00414.1| nucleic acid-binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 209
Score = 42.7 bits (99), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 11/148 (7%)
Query: 178 GGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQN 237
G A+ + + ++ + L +A + G I + + ++ TY C CN+KV D +
Sbjct: 11 GLNASIKMYTIAKVYAEGLNAQPRAQTFCIEGTIVIDKANSVTYLGCAMPHCNRKVHDSD 70
Query: 238 NG---MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGEST 294
G Y C C + F + + I + W T F + ++LGV + +
Sbjct: 71 IGTNMHYLCPTCKQSFMMPMPKYCICFQIVSGNDHKWATAFNTASTALLGVPVATMMDIF 130
Query: 295 EDH----PA----LKKALFTQYIFRLRA 314
D+ P L++A++ +Y+ ++
Sbjct: 131 ADNNMYKPVHSYNLQQAMYGKYLMTIQG 158
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 60/141 (42%), Gaps = 11/141 (7%)
Query: 650 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNG---MY 706
+ + ++ + L +A + G I + + ++ TY C CN+KV D + G Y
Sbjct: 18 MYTIAKVYAEGLNAQPRAQTFCIEGTIVIDKANSVTYLGCAMPHCNRKVHDSDIGTNMHY 77
Query: 707 RCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH---- 762
C C + F + + I + W T F + ++LGV + + D+
Sbjct: 78 LCPTCKQSFMMPMPKYCICFQIVSGNDHKWATAFNTASTALLGVPVATMMDIFADNNMYK 137
Query: 763 PA----LKKALFTQYIFRLRA 779
P L++A++ +Y+ ++
Sbjct: 138 PVHSYNLQQAMYGKYLMTIQG 158
>gi|77552440|gb|ABA95237.1| hypothetical protein LOC_Os11g44840 [Oryza sativa Japonica Group]
Length = 757
Score = 42.7 bits (99), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 10/193 (5%)
Query: 99 VTMTLWGK-EAETFDAS---NKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHK 154
V +TLWG A D + V V E++ + ++ S+ + L+ +IP +
Sbjct: 154 VKITLWGDILANMVDDDLLGKQTVFIATGLLVKEYEKLLSFGVTSSTEVFLDMEIPASME 213
Query: 155 LQGWFSTQT--NTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADY-CSVRGII 211
+ + + T E + G + N ++EI + + + ++ C+V+ I
Sbjct: 214 ILSRHNAEKVLPTMIEVDASTQGTIEEQMFYNRKTLKEITELRYSNIQQKEFICTVKAKI 273
Query: 212 QVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW 271
+ + N Y +C C + + + +Y C C KE R ++ + I D T
Sbjct: 274 EEIKSRNWWYMSCDKCFCGTR---KESNVYICNSCGKEAVNPKPRYVINLEISDHTTRTT 330
Query: 272 VTLFQNEAESILG 284
T+F EAE I G
Sbjct: 331 CTIFNEEAERIFG 343
Score = 39.7 bits (91), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 670 CSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIG 729
C+V+ I+ + N Y +C C + + + +Y C C KE R ++ + I
Sbjct: 267 CTVKAKIEEIKSRNWWYMSCDKCFCGTR---KESNVYICNSCGKEAVNPKPRYVINLEIS 323
Query: 730 DWTNSVWVTLFQNEAESILG 749
D T T+F EAE I G
Sbjct: 324 DHTTRTTCTIFNEEAERIFG 343
>gi|115435624|ref|NP_001042570.1| Os01g0244200 [Oryza sativa Japonica Group]
gi|113532101|dbj|BAF04484.1| Os01g0244200 [Oryza sativa Japonica Group]
Length = 2498
Score = 42.7 bits (99), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 107/267 (40%), Gaps = 37/267 (13%)
Query: 484 LLDESGEIRATMFNDECN-RFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHST 542
L+D+ G A C+ +F ++I + KVYY+ ++ ++++ +NN + FT T
Sbjct: 1706 LIDQEGTSIAAQIYPPCDLQFREIITEGKVYYLEYYRVREWSRRYRPVNNSLSICFTRWT 1765
Query: 543 TVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYM 602
V D + P Y P + + D + G S++G + K Y+
Sbjct: 1766 KVEQV-ADPAADFPLYTYSLTPYGGLRQ-RVDRKEEFTGDI-------SLSGNSACKWYI 1816
Query: 603 KRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLG 662
+ V+ + S+ GK E P AV A R Q ++ +I+D
Sbjct: 1817 NVNTPEVNSFKESIQ----GK-YEPIKMIELP--AVGAVRTGAEQKSIA---QIKDLNPF 1866
Query: 663 MGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRL 722
M K ++ I ++ S+ Y AC + C++ K + +YR+
Sbjct: 1867 MFRKNEFMVTVVIKKIDTESSWWYPACDT----------------CKRTAKPYGK-SYRI 1909
Query: 723 ILPVMIGDWTNSVWVTLFQNEAESILG 749
L ++ GD T LF A+ I+G
Sbjct: 1910 KLSLIAGDDTGDTKFVLFGRTAQRIIG 1936
>gi|391326848|ref|XP_003737922.1| PREDICTED: uncharacterized protein LOC100908623 [Metaseiulus
occidentalis]
Length = 107
Score = 42.7 bits (99), Expect = 0.85, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 400 PLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKA 459
P D + + +T + GS G+H +P P ++ P+ + + ++
Sbjct: 12 PRKRQADRAENDRGEPST-SEGSAGIH----VP-----PEKKSKPLHEIRLGKGCGQVEG 61
Query: 460 RVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFND 498
RV +KTP++ W+ G+GK+F+ + D SGEI D
Sbjct: 62 RVKSKTPVKHWSKGDGNGKIFNFVMSDTSGEINVIASGD 100
>gi|361069979|gb|AEW09301.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
gi|383157669|gb|AFG61167.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
gi|383157671|gb|AFG61168.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
gi|383157673|gb|AFG61169.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
gi|383157675|gb|AFG61170.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
gi|383157677|gb|AFG61171.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
gi|383157679|gb|AFG61172.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
gi|383157681|gb|AFG61173.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
gi|383157683|gb|AFG61174.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
Length = 94
Score = 42.7 bits (99), Expect = 0.85, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 119 IAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST 161
IAV+AA+VS++ G +LS + S L +NPD+P KL+ W+ T
Sbjct: 1 IAVRAAKVSDYSG-VSLSTTGRSTLMINPDLPVAQKLRSWYDT 42
>gi|77551838|gb|ABA94635.1| hypothetical protein LOC_Os11g38310 [Oryza sativa Japonica Group]
Length = 764
Score = 42.4 bits (98), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 10/193 (5%)
Query: 99 VTMTLWGK-EAETFDAS---NKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHK 154
V +TLWG A D + V V E++ + ++ S+ + L+ +IP +
Sbjct: 154 VKITLWGDILANMVDDDLLGKQTVFIATGLLVKEYEKLLSFGVTSSTEVFLDMEIPASME 213
Query: 155 LQGWFSTQT--NTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADY-CSVRGII 211
+ + + T E + G + N ++EI + + + ++ C+V+ I
Sbjct: 214 ILSRHNAEKVLPTMIEVDASTQGTIEEQMFYNRKTLKEITELRYSNIQQKEFICTVKAKI 273
Query: 212 QVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW 271
+ + N Y +C C + + + +Y C C KE R ++ + I D T
Sbjct: 274 EEIKSRNWWYMSCDKCFCGTR---KESNVYICNSCGKEAVNPKPRYVINLEISDHTTRTT 330
Query: 272 VTLFQNEAESILG 284
T+F EAE I G
Sbjct: 331 CTIFNEEAERIFG 343
Score = 39.7 bits (91), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 670 CSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIG 729
C+V+ I+ + N Y +C C + + + +Y C C KE R ++ + I
Sbjct: 267 CTVKAKIEEIKSRNWWYMSCDKCFCGTR---KESNVYICNSCGKEAVNPKPRYVINLEIS 323
Query: 730 DWTNSVWVTLFQNEAESILG 749
D T T+F EAE I G
Sbjct: 324 DHTTRTTCTIFNEEAERIFG 343
>gi|402217335|gb|EJT97416.1| hypothetical protein DACRYDRAFT_18788 [Dacryopinax sp. DJM-731 SS1]
Length = 444
Score = 42.4 bits (98), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 102/242 (42%), Gaps = 31/242 (12%)
Query: 73 SSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGG 132
S++T + N + ++ ++ +VD S+ + + +WG+EA F+A + VI ++AA+V + G
Sbjct: 181 STLTPRVNDRMTIQ-EVQVVDASRYTCRVAVWGEEAIKFNAIIRDVIIIQAAQVCKHAGT 239
Query: 133 KTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGG------------- 179
L + S +L N +L + T + M G
Sbjct: 240 SLLLEAGSKILFENGG-----QLMTFMELSDITFGASATACLSSMSGQDKLTTISDAIYN 294
Query: 180 --GAAGNLLLMREIQDQQLGMGDKADYCSVR-----GIIQVFRG----SNTTYKACPSQD 228
G+ GN L + + D+ Y + + G++ F T +A ++D
Sbjct: 295 ELGSDGNKTLFKTFAYLKDICTDQIAYHACQMLRCNGLVNPFMAEVPIQPQTDQAYVNED 354
Query: 229 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 288
+K+ + + ++ C C+K F+ L V I D S+ +T+F E +L +
Sbjct: 355 -SKETLFKMKQLWECCVCHKSFDDSCICYQLEVQITDGKESITMTMFDKVIEEMLQIPVH 413
Query: 289 EV 290
+V
Sbjct: 414 QV 415
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 590 SSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGN 649
S++T + N + ++ ++ +VD S+ + + +WG+EA F+A + VI ++AA+V + G
Sbjct: 181 STLTPRVNDRMTIQ-EVQVVDASRYTCRVAVWGEEAIKFNAIIRDVIIIQAAQVCKHAGT 239
Query: 650 LLLM 653
LL+
Sbjct: 240 SLLL 243
>gi|218198314|gb|EEC80741.1| hypothetical protein OsI_23219 [Oryza sativa Indica Group]
Length = 667
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 10/193 (5%)
Query: 99 VTMTLWGK-EAETFDAS---NKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHK 154
V +TLWG A D + V V E++ + ++ S+ + L+ +IP +
Sbjct: 96 VKITLWGDILANMVDDDLLGKQTVFIATGLLVKEYEKLLSFGVTSSTEVFLDMEIPASME 155
Query: 155 LQGWFSTQT--NTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADY-CSVRGII 211
+ + + T E + G + N ++EI + + + ++ C+V+ I
Sbjct: 156 ILSRHNAEKVLPTMIEVDASTQGTIEEQMFYNRKTLKEITELRYSNIQQKEFICTVKAKI 215
Query: 212 QVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW 271
+ + N Y +C C + + + +Y C C KE R ++ + I D T
Sbjct: 216 EEIKSRNWWYMSCDKCFCGTR---KESNVYICNSCGKEAVNPKPRYVINLEISDHTTRTT 272
Query: 272 VTLFQNEAESILG 284
T+F EAE I G
Sbjct: 273 CTIFNEEAERIFG 285
Score = 39.7 bits (91), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 670 CSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIG 729
C+V+ I+ + N Y +C C + + + +Y C C KE R ++ + I
Sbjct: 209 CTVKAKIEEIKSRNWWYMSCDKCFCGTR---KESNVYICNSCGKEAVNPKPRYVINLEIS 265
Query: 730 DWTNSVWVTLFQNEAESILG 749
D T T+F EAE I G
Sbjct: 266 DHTTRTTCTIFNEEAERIFG 285
>gi|359493963|ref|XP_003634702.1| PREDICTED: replication factor A protein 1-like [Vitis vinifera]
gi|302143225|emb|CBI20520.3| unnamed protein product [Vitis vinifera]
Length = 75
Score = 42.4 bits (98), Expect = 1.1, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 241 YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 290
Y CE C K + + R I+ V + D + W++LF +AE I G +A E+
Sbjct: 9 YWCEGCQKNDDECSLRYIMVVKVSDASGEAWLSLFNEQAERIFGYSADEL 58
Score = 42.4 bits (98), Expect = 1.1, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 706 YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 755
Y CE C K + + R I+ V + D + W++LF +AE I G +A E+
Sbjct: 9 YWCEGCQKNDDECSLRYIMVVKVSDASGEAWLSLFNEQAERIFGYSADEL 58
>gi|358349135|ref|XP_003638595.1| hypothetical protein MTR_137s0043 [Medicago truncatula]
gi|355504530|gb|AES85733.1| hypothetical protein MTR_137s0043 [Medicago truncatula]
Length = 372
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 7/145 (4%)
Query: 484 LLDE-SGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHST 542
L+DE G I AT D +F M+++ Y + N + + ++ +++S H++
Sbjct: 27 LVDEKGGRIHATCRKDLVAKFRSMVQEGGAYQLENAMVGFNESPYKVTSHKHKLSMMHNS 86
Query: 543 TVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDE-NIDVLGVCIDAAELSSVTGKTNQKTY 601
T + + P + F P I + +E + DV+G I+ ++ T K +K
Sbjct: 87 TFTKVHSPAI---PMNVFEFKPFNEILSSTVEEVSTDVIGHVIERGDIRE-TEKDGRKNR 142
Query: 602 MKRDITLVDQSQASVTMTLWGKEAE 626
+ D+TL D + +LWG+ A+
Sbjct: 143 VI-DLTLEDLENNRLHCSLWGEHAD 166
>gi|413935987|gb|AFW70538.1| hypothetical protein ZEAMMB73_690566 [Zea mays]
Length = 428
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 87 RDITLVDQSQASVTMTLWGKEAETFDAS-------NKPVIAVKAARVSE-FQGGKTLSLS 138
RDI + + S S+ +TLWG +A +F S N+P++ + +++ F+G LS +
Sbjct: 68 RDIFIKNTSDMSLKITLWGNQASSFSISDVYNQSNNQPIVILLVGFLAKRFKGQPYLSST 127
Query: 139 MSSVLSLNPDIPE 151
+S NP IPE
Sbjct: 128 TASSWYFNPGIPE 140
>gi|57899245|dbj|BAD87490.1| replication protein-like [Oryza sativa Japonica Group]
Length = 269
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 71/158 (44%), Gaps = 9/158 (5%)
Query: 456 TIKARVTNKTPIREWNNARGSGKLFSIDLL---DESGEIRATMFNDECNRFHDMIEKDKV 512
T+ RV+ + E+++ G L I L+ ++ I A ++ +F +I + KV
Sbjct: 17 TLLVRVSR---LWEYHDQDDEGDLRHIGLVLVGEKGYAIAAMIYPPWGKKFKPLISEGKV 73
Query: 513 YYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI- 571
Y ++ +KP K + ++N ++FT T + + + G Y P + +
Sbjct: 74 YLLTYYRVKPCTKHYRPVDNKMMINFTRWTGIEEYVDVQAG-FGHYAYTLTPYQELRSRV 132
Query: 572 -SPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITL 608
D DV+GV D + +++V + +KR++ +
Sbjct: 133 DRKDSFTDVIGVITDISSVTTVRTRVRDSDSLKRNVYM 170
>gi|73668500|ref|YP_304515.1| replication factor A [Methanosarcina barkeri str. Fusaro]
gi|72395662|gb|AAZ69935.1| replication factor-A protein [Methanosarcina barkeri str. Fusaro]
Length = 484
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGS-GKLFSIDLLDESGEIRATMFNDECNR 502
PI + N + RV + IR + GS G++ ++ L D +G+IR T+++++ N
Sbjct: 278 PIEDIRADMNNINVSGRVLDIGEIRTFEKKDGSPGRVGNLLLGDSTGKIRLTLWDEKTNF 337
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
D+V + + A + ++ N E++ + +I +E E+ + F
Sbjct: 338 L------DEVDFDETIEVLHAYSRENAFNQQVELNLGNRG-IIQKSEKEI----EYREKF 386
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
IA+I P E+ V G + EL + + + ++ L D++ S+ +TLWG
Sbjct: 387 TD---IADIIPGESYSVQGKVSEIGELREFEREDGTENVVA-NLQLKDET-GSIRLTLWG 441
Query: 623 KEA 625
++A
Sbjct: 442 EQA 444
>gi|357456577|ref|XP_003598569.1| hypothetical protein MTR_3g015660 [Medicago truncatula]
gi|355487617|gb|AES68820.1| hypothetical protein MTR_3g015660 [Medicago truncatula]
Length = 284
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 83/185 (44%), Gaps = 8/185 (4%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNR 502
PI ++S + + RV + IR+ S ++ L+DE G AT D +
Sbjct: 7 PISAVSGGRKNLKMCVRVAHIWLIRD-KKVPTSIIFMNMLLVDEKGGCFHATARKDLVAK 65
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F M+++ Y + N + + ++ +++S H++T + + P + F
Sbjct: 66 FRSMVQEGGTYQLENAIVGFNESPYKVTSHKHKLSMMHTSTFTKVHSPAI---PMNVFEF 122
Query: 563 VPLKTIAEISPDE-NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
P I + +E + DV+G I+ ++ T K +K+ + D+TL D + +LW
Sbjct: 123 KPFNGILSSTVEEVSTDVIGHVIERGDIRE-TEKDGRKSRVI-DLTLEDLENNRLHCSLW 180
Query: 622 GKEAE 626
G+ A+
Sbjct: 181 GEHAD 185
>gi|77552149|gb|ABA94946.1| hypothetical protein LOC_Os11g41180 [Oryza sativa Japonica Group]
Length = 800
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 10/193 (5%)
Query: 99 VTMTLWGK-EAETFDAS---NKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHK 154
V +TLWG A D + V V E++ + ++ S+ + L+ +IP +
Sbjct: 154 VKITLWGDILANMVDDDLLGKQTVFIATGLLVKEYEKLLSFGVTSSTEVFLDMEIPASME 213
Query: 155 LQGWFSTQT--NTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADY-CSVRGII 211
+ + + T E + G + N ++EI + + + ++ C+V+ I
Sbjct: 214 ILSRHNAEKVLPTMIEVDASTQGTIEEQMFYNRKTLKEITELRYSNIQQKEFICTVKAKI 273
Query: 212 QVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW 271
+ + N Y +C C + + + +Y C C KE R ++ + I D T
Sbjct: 274 EEIKSRNWWYMSCDKCFCGTR---KESNVYICNSCGKEAVNPKPRYVINLEISDHTTRTT 330
Query: 272 VTLFQNEAESILG 284
T+F EAE I G
Sbjct: 331 CTIFNEEAERIFG 343
Score = 39.3 bits (90), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 670 CSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIG 729
C+V+ I+ + N Y +C C + + + +Y C C KE R ++ + I
Sbjct: 267 CTVKAKIEEIKSRNWWYMSCDKCFCGTR---KESNVYICNSCGKEAVNPKPRYVINLEIS 323
Query: 730 DWTNSVWVTLFQNEAESILG 749
D T T+F EAE I G
Sbjct: 324 DHTTRTTCTIFNEEAERIFG 343
>gi|414589167|tpg|DAA39738.1| TPA: hypothetical protein ZEAMMB73_875706 [Zea mays]
Length = 487
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 115 NKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQR 173
+ P++A+K+ +VS+FQG ++ S+ L +NPD+ E L W+ ++ + P+S
Sbjct: 229 SSPIVAIKSLKVSDFQGVSLPTIGRST-LEINPDLLEAKNLMSWYVSEGKDISLAPISAE 287
Query: 174 TGGMGGGA 181
G G
Sbjct: 288 AGATRAGG 295
>gi|55168169|gb|AAV44036.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 820
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 10/193 (5%)
Query: 99 VTMTLWGK-EAETFDAS---NKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHK 154
V +TLWG A D + V V E++ + ++ S+ + L+ +IP +
Sbjct: 154 VKITLWGDILANMVDDDLLGKQTVFIATGLLVKEYEKLLSFGVTSSTEVFLDMEIPASME 213
Query: 155 LQGWFSTQT--NTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADY-CSVRGII 211
+ + + T E + G + N ++EI + + + ++ C+V+ I
Sbjct: 214 ILSRHNAEKVLPTMIEVDASTQGTIEEQMFYNRKTLKEITELRYSNIQQKEFICTVKAKI 273
Query: 212 QVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW 271
+ + N Y +C C + + + +Y C C KE R ++ + I D T
Sbjct: 274 EEIKSRNWWYMSCDKCFCGTR---KESNVYICNSCGKEAVNPKPRYVINLEISDHTTRTT 330
Query: 272 VTLFQNEAESILG 284
T+F EAE I G
Sbjct: 331 CTIFNEEAERIFG 343
Score = 39.3 bits (90), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 670 CSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIG 729
C+V+ I+ + N Y +C C + + + +Y C C KE R ++ + I
Sbjct: 267 CTVKAKIEEIKSRNWWYMSCDKCFCGTR---KESNVYICNSCGKEAVNPKPRYVINLEIS 323
Query: 730 DWTNSVWVTLFQNEAESILG 749
D T T+F EAE I G
Sbjct: 324 DHTTRTTCTIFNEEAERIFG 343
>gi|413925396|gb|AFW65328.1| putative peptidase C48 domain family protein [Zea mays]
Length = 1358
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 8/136 (5%)
Query: 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNR-FHDMIEKD 510
Q K++I ARV K PI R L I+ +I A E + F+ ++ +
Sbjct: 267 QRKYSIVARVEVKFPIEPRYRDRQHYILSDIN----GAKIEAIANRYEIVKYFNSLLHEK 322
Query: 511 KVYYISNC--TLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI 568
VY + N L P F +N E+ FTH T V P V P K+ F+ L I
Sbjct: 323 HVYKMHNVWFGLNPGAFNFRHLNGTMELYFTHQTVVEPYAV-PVQMPPFPKHIFLNLDDI 381
Query: 569 AEISPDENIDVLGVCI 584
AE+ +D++ + +
Sbjct: 382 AELPNRTLVDIMAIVV 397
>gi|413937359|gb|AFW71910.1| hypothetical protein ZEAMMB73_094583 [Zea mays]
Length = 206
Score = 41.6 bits (96), Expect = 1.6, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 8/136 (5%)
Query: 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNR-FHDMIEKD 510
Q K++I ARV K PI R L I+ +I A E + F+ ++ +
Sbjct: 48 QRKYSIVARVEVKFPIEPRYRDRQHYILSDIN----GAKIEAIANRYEIVKYFNSLLHEK 103
Query: 511 KVYYISNC--TLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI 568
VY + N L P F +N E+ FTH T V P V P K+ F+ L I
Sbjct: 104 HVYKMHNVWFGLNPGAFNFRHLNGTMELYFTHQTIVEP-YAVPVQMPPFPKHIFLNLDDI 162
Query: 569 AEISPDENIDVLGVCI 584
AE+ +D++ + +
Sbjct: 163 AELPNRTLVDIMAIVV 178
>gi|426199763|gb|EKV49687.1| hypothetical protein AGABI2DRAFT_176347 [Agaricus bisporus var.
bisporus H97]
Length = 371
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 29/209 (13%)
Query: 457 IKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFND-ECNRFHDMIEKDKVYYI 515
I+ RVT K+ + + + + F I L+DESGE+RA + D + +D + ++Y I
Sbjct: 85 IQVRVTFKSRLHDPRHPTQNLG-FYIHLMDESGEVRAEVDTDLLADEIYDRFQVGRLYNI 143
Query: 516 SNCTLKPANKKFSSINN--DYEMSFTHSTTVI-PCNEDEVGNMPSVKYCFVPLKTIAEIS 572
+ K + + + N D + S TVI C+ + +P ++ F P+ + ++
Sbjct: 144 YHSGHKGFFEGRTFLYNLKDRSLLDISSWTVIEECS--VISRLPPYRFSFTPIPRLVKME 201
Query: 573 PDENI----------------DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
++ I DVL + D SV T + R + + DQS+ +
Sbjct: 202 RNDKITSTYDPYNDTLLTWSVDVLAIVKDV----SVIDDTLKVPV--RQVIIFDQSELEL 255
Query: 617 TMTLWGKEAETFDASNKPVIAVKAARVSE 645
+ L+ AE F A ++A + A + E
Sbjct: 256 LVKLFSYNAEEFVARPGDIVAFRNAHLLE 284
>gi|414587963|tpg|DAA38534.1| TPA: hypothetical protein ZEAMMB73_990141 [Zea mays]
Length = 372
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 22/200 (11%)
Query: 98 SVTMTLWGKEAETFD-------ASNKPVIAVKAARVSE-FQGGKTLSLSMSSVLSLNPDI 149
S+ +TLWG +A F +SN+P++ + +++ F+G LS + +S NP I
Sbjct: 2 SLKITLWGNQASNFSISDVYNQSSNQPIVILLVGFLAKRFKGQPYLSGTTASSWYFNPGI 61
Query: 150 PECHKLQGWFSTQTNTRFEPVSQRTGG---MGGGAAGNL--LLMREIQDQQLGMGDKADY 204
PE Q ++S N + + Q T + NL + E+ D M Y
Sbjct: 62 PEA---QTYYSRLQNNDLQLI-QPTAAEEEIQVSQPPNLEHKTVEELLDIDPDMFPPEGY 117
Query: 205 CSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIG 264
I ++ + S Y +C C+K + G Y C C F Y+L +
Sbjct: 118 RCTVTISRIVQNSKWWYPSC--SRCHKSSSQTSTG-YHCTSCGCTDINFRYKLSF--IAT 172
Query: 265 DWTNSVWVTLFQNEAESILG 284
D T F + A I+G
Sbjct: 173 DGTCEAEFFCFDSIARKIVG 192
>gi|321456442|gb|EFX67550.1| hypothetical protein DAPPUDRAFT_330970 [Daphnia pulex]
Length = 200
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 18/136 (13%)
Query: 33 DEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDIT-- 90
+E P++ + FVP + D +DV+G+ + E V KT T + R +T
Sbjct: 43 EEAAEKPTITFNFVPFDQLPNQENDSIVDVIGLVLHLQEKVLVETKT---TKISRSLTAE 99
Query: 91 LVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIP 150
VD S L K A +K ++A+ ++S G + L S+V+ +N D+
Sbjct: 100 FVDSS-------LLEKVA------DKCIVALPGVKISNKFGRRYLETLSSTVVQINADMT 146
Query: 151 ECHKLQGWFSTQTNTR 166
E +L+ W T R
Sbjct: 147 EVRELREWTCDFTQKR 162
>gi|297724261|ref|NP_001174494.1| Os05g0523100 [Oryza sativa Japonica Group]
gi|255676500|dbj|BAH93222.1| Os05g0523100 [Oryza sativa Japonica Group]
Length = 1068
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 10/193 (5%)
Query: 99 VTMTLWGK-EAETFDAS---NKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHK 154
V +TLWG A D + V V E++ + ++ S+ + L+ +IP +
Sbjct: 402 VKITLWGDILANMVDDDLLGKQTVFIATGLLVKEYEKLLSFGVTSSTEVFLDMEIPASME 461
Query: 155 LQGWFSTQT--NTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADY-CSVRGII 211
+ + + T E + G + N ++EI + + + ++ C+V+ I
Sbjct: 462 ILSRHNAEKVLPTMIEVDASTQGTIEEQMFYNRKTLKEITELRYSNIQQKEFICTVKAKI 521
Query: 212 QVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW 271
+ + N Y +C C + + + +Y C C KE R ++ + I D T
Sbjct: 522 EEIKSRNWWYMSCDKCFCGTR---KESNVYICNSCGKEAVNPKPRYVINLEISDHTTRTT 578
Query: 272 VTLFQNEAESILG 284
T+F EAE I G
Sbjct: 579 CTIFNEEAERIFG 591
Score = 39.7 bits (91), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 670 CSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIG 729
C+V+ I+ + N Y +C C + + + +Y C C KE R ++ + I
Sbjct: 515 CTVKAKIEEIKSRNWWYMSCDKCFCGTR---KESNVYICNSCGKEAVNPKPRYVINLEIS 571
Query: 730 DWTNSVWVTLFQNEAESILG 749
D T T+F EAE I G
Sbjct: 572 DHTTRTTCTIFNEEAERIFG 591
>gi|321448671|gb|EFX61535.1| hypothetical protein DAPPUDRAFT_121550 [Daphnia pulex]
Length = 688
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 489 GEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSIN-NDYEMSFTHSTTVIPC 547
GEIRAT++ + N + ++ +KVY +SN + + +++SSI Y+++F T
Sbjct: 507 GEIRATIWRENLNLWQQRLKVNKVYDVSNFKVLKSEQRYSSIRPGKYQINFDKWTKCDAV 566
Query: 548 NE-DEVGNMPSVKY---CFVPLKTIAEISPDENI-DVLGVCID 585
+ D + N P + + F ++T+ S D I D+ G+ ID
Sbjct: 567 GDSDLIPNFPVLNWQLKTFSEIQTMNRYSEDVIIVDIFGLYID 609
>gi|358055798|dbj|GAA98143.1| hypothetical protein E5Q_04826 [Mixia osmundae IAM 14324]
Length = 290
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 406 DNSSTQQTPAATNTN--GSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTN 463
D S T T A T + G G+ + IP + + +++ H + +I A +
Sbjct: 121 DASRTADTQAGTESRAQGIFGIDLFMIIPLKRAHEMLKQH-----GQFGASISILAAIIE 175
Query: 464 KTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNRFHDMIEKDKVYYISNCTL 520
T +RE + RG+ KL ++++ DESG +R + D + + + + V +++N L
Sbjct: 176 VTELRELSTKRGTNKLVTVEVWDESGSTLRIAAWGDVAQHWRNTVRRGDVVHVNNIRL 233
>gi|298710030|emb|CBJ31748.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 212
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 10/75 (13%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFK 394
+MLATQ N++I+ G L E I+ + YIV+ V N+ ++I+L+L++ T K
Sbjct: 22 SMLATQQNEMISSGDLKELCIITLSDYIVNVVQ-----NKRLIILLKLDVTSGPTP---K 73
Query: 395 IGNPQPLNTNTDNSS 409
IG+ P+N + D+S+
Sbjct: 74 IGD--PINFSEDSSA 86
>gi|7939544|dbj|BAA95747.1| replication protein-like [Arabidopsis thaliana]
Length = 170
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 15/171 (8%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNN-ARGSGKLFSIDLLDESGE-IRATMFNDECN 501
P+ SL PY+N W I+ ++ + W + G+ + L++E G+ + A + ++
Sbjct: 11 PLKSLKPYKNAWRIQVKL-----LHVWRQYSVKVGESIEMILVNEVGDKMYAPVRREQIE 65
Query: 502 RFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC 561
+ + + I+ TL + ++ + Y++ F TTV PC D V + ++
Sbjct: 66 KIERCLTEGVWKIITTITLNHTSGQYRISDLKYKIGFVFKTTVSPC--DTVFD--ALFLS 121
Query: 562 FVPLKTIAEISPDENI--DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVD 610
I S + NI DV+G +D +E+ + N K+ K D L D
Sbjct: 122 LAKFDVILSGSANSNILHDVMGQVVDRSEIKDLNA--NNKSTKKIDFHLRD 170
>gi|297822327|ref|XP_002879046.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297324885|gb|EFH55305.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 242
Score = 41.2 bits (95), Expect = 2.3, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 71/154 (46%), Gaps = 14/154 (9%)
Query: 443 HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNR 502
H + L P W I+ +V + N R + +L +D D+ +I + ++
Sbjct: 5 HDVSILRPCITGWHIRVKVLRMITV--CINPRNALRLVLVD--DKGFKIDCWINSEYAKH 60
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV--KY 560
+ + +E+D+ + + + + + N+++ MS +T V+P + PS +
Sbjct: 61 YAEFLEEDRWFSFTEFRVLENSDRVRLTNHNFRMSVFGTTVVLPADP------PSTEPRD 114
Query: 561 CFVPLKTIAEISPDEN--IDVLGVCIDAAELSSV 592
F P +I + + DE+ ID++GV D EL +V
Sbjct: 115 SFTPFSSIIDGTVDESVLIDLIGVLSDVGELVNV 148
>gi|159906009|ref|YP_001549671.1| replication factor A [Methanococcus maripaludis C6]
gi|159887502|gb|ABX02439.1| nucleic acid binding OB-fold tRNA/helicase-type [Methanococcus
maripaludis C6]
Length = 642
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 73/367 (19%), Positives = 147/367 (40%), Gaps = 34/367 (9%)
Query: 427 NNVAIPRQA--SAPVVQTHPIVSLSPYQNKW-TIKARVTNKTPIREWNNARGSGKLFSID 483
+N+ I ++ V+ I L+ + ++ TI V N + RE + + ++ I
Sbjct: 259 DNIGIVEESVKEEKSVEKMNISELASFDGEYVTISGNVANISGSREVQFSDRTAEVQDIY 318
Query: 484 LLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTT 543
L D +G ++ + N +D+ E D + +SNC L+ D ++
Sbjct: 319 LNDGTGMVKIAFWGANRNILNDLKEGDYLN-VSNCKLRTYTDNTGEKRADLTYNYMS--- 374
Query: 544 VIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMK 603
+DE + V+ ++ + ++ V+G+ +A ++ + ++N T
Sbjct: 375 --ELKKDETASEKIVEKITAIGDILSGSADSSDLTVIGMVTNAYPVNEFS-RSNGGTGKV 431
Query: 604 RDITLVDQSQASVTMTLWGKEAETFDASNKPVI------AVKAARVSEFQGNLLLMREIQ 657
R+I L D S S+ M LW +AE + S V+ A ++ + E+
Sbjct: 432 RNIQL-DDSTGSIRMALWDSDAE-IEISEGDVVKLIHGFAKESGEYMDLSTGRFGRIEVN 489
Query: 658 DQQLGMGDKADYCS---------VRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 708
+ + + +Y + + G + +R + CP +C K+V +N Y C
Sbjct: 490 PEGISIKSPRNYIADLEEGVSTEISGTVVDYRKQDVILSLCP--NCRKRVSLVDN-KYTC 546
Query: 709 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 768
E C + T L+ + I D T + ++ N E + ++ ++ E D AL
Sbjct: 547 EVCGEV--TPNELLVSNLTIDDGTGVINCRIYGNNVEKVTELSKNKIKEMNLD--ALSNV 602
Query: 769 LFTQYIF 775
L +F
Sbjct: 603 LGKDVLF 609
>gi|357519361|ref|XP_003629969.1| Replication factor A protein [Medicago truncatula]
gi|355523991|gb|AET04445.1| Replication factor A protein [Medicago truncatula]
Length = 296
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 94/218 (43%), Gaps = 21/218 (9%)
Query: 443 HPIVS-LSPYQNKWTIKARVTNKTPIREW--NNARGSGKLFSID--LLDESG-EIRATMF 496
H +S +SP + WT+ RV +R W + + FS++ L+D G +I A++
Sbjct: 5 HDFISNVSPRKQSWTLVVRV-----VRAWFGQDYKNKKLPFSMEFVLIDRKGDQIGASIR 59
Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
+F + +++ V+ IS+ + + + +N+Y+++FT +T V V P
Sbjct: 60 RTLIYKFKEQLQEGMVFTISSFDVASNSGSYRPSHNEYKLNFTINTKVKLSKTILV---P 116
Query: 557 SVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
Y F P + S D N ++ V + + T K ++ +D +
Sbjct: 117 INVYSFTPAPDVFNESYDNNY-LVDVIGVIIGVGVEREYEREGTKTKMNVIELDSNGYRF 175
Query: 617 TMTLWGKEAETF------DASNKPVIAVKAARVSEFQG 648
TL+G+ E D S V+A+ +V FQG
Sbjct: 176 KCTLFGEYVEELNSLLSSDESQNVVVAIMLTKVKLFQG 213
>gi|391331509|ref|XP_003740187.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 278
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 73/195 (37%), Gaps = 42/195 (21%)
Query: 457 IKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYIS 516
+ R+ +KTPI+ W +GKLF+ L D SG+I + ++ I K
Sbjct: 77 VLGRIKSKTPIKVWTKGTDTGKLFNFVLSDMSGDINVISSGNAAEEIYEKITLSK----- 131
Query: 517 NCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN 576
++P D ++P ++ L +A +
Sbjct: 132 ---------------------------IVPIAGD---DLPEIQSLTTILSDLATKPANSV 161
Query: 577 IDVLGVCIDAAELSSVT---GKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNK 633
ID+ V D S T G + QK IT++D+S + + +W + FD
Sbjct: 162 IDIRVVIFDVGPPQSFTCHDGTSRQKQI----ITVLDKSMRMINVGVWSEFVGKFDDKEG 217
Query: 634 PVIAVKAARVSEFQG 648
+ + ++ +++G
Sbjct: 218 QAVINRNLQIRDYKG 232
Score = 40.0 bits (92), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 27 VIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVT---GKTNQKT 83
++P D ++P ++ L +A + ID+ V D S T G + QK
Sbjct: 132 IVPIAGD---DLPEIQSLTTILSDLATKPANSVIDIRVVIFDVGPPQSFTCHDGTSRQKQ 188
Query: 84 YMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVL 143
IT++D+S + + +W + FD + + ++ +++G + LS + +++L
Sbjct: 189 I----ITVLDKSMRMINVGVWSEFVGKFDDKEGQAVINRNLQIRDYKGVRQLSSTSNTML 244
Query: 144 SLNPDIPECHKLQGWFST 161
+ D E +LQ WF T
Sbjct: 245 AAITD-TETRELQTWFET 261
>gi|414587964|tpg|DAA38535.1| TPA: hypothetical protein ZEAMMB73_990141, partial [Zea mays]
Length = 314
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 22/200 (11%)
Query: 98 SVTMTLWGKEAETFD-------ASNKPVIAVKAARVSE-FQGGKTLSLSMSSVLSLNPDI 149
S+ +TLWG +A F +SN+P++ + +++ F+G LS + +S NP I
Sbjct: 2 SLKITLWGNQASNFSISDVYNQSSNQPIVILLVGFLAKRFKGQPYLSGTTASSWYFNPGI 61
Query: 150 PECHKLQGWFSTQTNTRFEPVSQRTGG---MGGGAAGNL--LLMREIQDQQLGMGDKADY 204
PE Q ++S N + + Q T + NL + E+ D M Y
Sbjct: 62 PEA---QTYYSRLQNNDLQLI-QPTAAEEEIQVSQPPNLEHKTVEELLDIDPDMFPPEGY 117
Query: 205 CSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIG 264
I ++ + S Y +C C+K + G Y C C F Y+L +
Sbjct: 118 RCTVTISRIVQNSKWWYPSC--SRCHKSSSQTSTG-YHCTSCGCTDINFRYKLSF--IAT 172
Query: 265 DWTNSVWVTLFQNEAESILG 284
D T F + A I+G
Sbjct: 173 DGTCEAEFFCFDSIARKIVG 192
>gi|321455965|gb|EFX67084.1| hypothetical protein DAPPUDRAFT_115765 [Daphnia pulex]
Length = 673
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 489 GEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSIN-NDYEMSFTHSTTVIPC 547
GEIRAT++ + N + ++ +KVY +SN + + +++SSI Y+++F T
Sbjct: 522 GEIRATIWRENLNLWQQRLKVNKVYDVSNFKVLKSEQRYSSIRPGKYQINFDKWTKCDAV 581
Query: 548 NE-DEVGNMPSVKY---CFVPLKTIAEISPDENI-DVLGVCID 585
+ D + N P + + F ++T+ S D I D+ G+ ID
Sbjct: 582 GDSDLIPNFPVLNWQLKTFSEIQTMNRYSEDVIIVDIFGLYID 624
>gi|414888073|tpg|DAA64087.1| TPA: hypothetical protein ZEAMMB73_996720 [Zea mays]
Length = 483
Score = 40.8 bits (94), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 87/200 (43%), Gaps = 21/200 (10%)
Query: 469 EWNNARGSGKLFSIDLL--DESG-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANK 525
E+ A +G + ID++ D +G I + + D + K+Y ++ ++ A
Sbjct: 27 EFRGAVDNGPILHIDMILTDCTGNAIHCQIPSFLAATRGDEFQVGKIYKMTRFSVARAKS 86
Query: 526 KFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN-----IDVL 580
+ ++ D + TT+ C+ G P Y L + +I PD + DVL
Sbjct: 87 TYKPVDGDLMLYVKPYTTLELCHTSPSG-FPLYVYH---LTSYDKIDPDGSNARNFHDVL 142
Query: 581 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN-------K 633
G+ + + + V G + + R + + + S + +TLWGK A+ F +N
Sbjct: 143 GIITEISAIKPV-GNAHIPSSYNRHVLIKNLSDDILKITLWGKRAQEFSLTNTYDPQKQT 201
Query: 634 PVIAVKAARVS-EFQGNLLL 652
P++ + + E+QG +LL
Sbjct: 202 PIVVLFVGCLPKEYQGEVLL 221
>gi|391333915|ref|XP_003741355.1| PREDICTED: uncharacterized protein LOC100901486 [Metaseiulus
occidentalis]
Length = 1310
Score = 40.8 bits (94), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 507 IEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLK 566
IE K Y I+ +KP N KF + N+D+E+ T + + E + +P +K P+
Sbjct: 1110 IEIGKCYQITIFRVKPVNVKFENANHDFEVQLTKLSKI---REIDNAIIPELKTDLTPIV 1166
Query: 567 TIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS 612
I + ++ ++V+ + D +V + + K ++++TLVD S
Sbjct: 1167 EILGRNGNDFVNVMAIVYDVEPAQTVDCR-DAKPRTRQNVTLVDNS 1211
>gi|134045604|ref|YP_001097090.1| replication factor A [Methanococcus maripaludis C5]
gi|132663229|gb|ABO34875.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Methanococcus
maripaludis C5]
Length = 642
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 71/352 (20%), Positives = 143/352 (40%), Gaps = 32/352 (9%)
Query: 440 VQTHPIVSLSPYQNKW-TIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFND 498
V+ I L+ + ++ TI +TN + RE + + ++ + L D +G ++ +
Sbjct: 274 VEKMNISELTSFDGEYVTISGNITNISGSREVQFSDRNAEVQDMYLNDGTGMVKIAFWGP 333
Query: 499 ECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV 558
N +D+ E D + +SNC L+ D ++ +DE + V
Sbjct: 334 NRNILNDLKEGDYLN-VSNCKLRTYTDNTGEKRADLTYNYMS-----ELKKDESASEKIV 387
Query: 559 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM 618
+ ++ + ++ V+G+ +A ++ + ++N T R+I L D S S+ M
Sbjct: 388 EKITAIGDILSGSADSSDVTVIGMVTNAYPVNEFS-RSNGGTGKVRNIML-DDSTGSIRM 445
Query: 619 TLWGKEAETFDASNKPVI------AVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCS- 671
LW +AET + S V+ A ++ + E+ + + + +Y +
Sbjct: 446 ALWDGDAET-EISEGDVVKLIHGYAKESGEYMDLSTGRFGRIEVNPEGISIKSPRNYIAD 504
Query: 672 --------VRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLI 723
+ G + +R + CP +C K+V +N Y CE C + T L+
Sbjct: 505 LEEGISTEISGTVVDYRKQDVILSLCP--NCRKRVSLVDN-KYTCEVCGEV--TPNELLV 559
Query: 724 LPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIF 775
+ + D T + ++ N E I ++ ++ E D AL L +F
Sbjct: 560 SNLTLDDGTGVINCRIYGNNVEKITELSKDKLKEMNLD--ALSNVLGKDVLF 609
>gi|15679383|ref|NP_276500.1| replication factor A-like protein [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2622494|gb|AAB85861.1| replication factor A related protein [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 181
Score = 40.4 bits (93), Expect = 3.4, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 17/138 (12%)
Query: 159 FSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADY------CSVRGIIQ 212
S ++R EP S+R L E+Q+ D AD + G +
Sbjct: 3 LSIGNSSRIEPASERD-------LEGLPSFDELQEMLYPHRDIADLDEDSRNVLIEGELI 55
Query: 213 VFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWV 272
G CPS CN+++ + + C C + + Y L++P I D T V +
Sbjct: 56 EMSGRRILSIKCPS--CNERLDLSDENI--CNFCGELVDEPRYLLMIPGRIMDDTGEVMI 111
Query: 273 TLFQNEAESILGVTAQEV 290
T F EAESIL +T EV
Sbjct: 112 TFFGREAESILEMTTDEV 129
Score = 40.0 bits (92), Expect = 5.0, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 645 EFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNG 704
E Q L R+I D + + + + G + G CPS CN+++ +
Sbjct: 27 ELQEMLYPHRDIAD----LDEDSRNVLIEGELIEMSGRRILSIKCPS--CNERLDLSDEN 80
Query: 705 MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 755
+ C C + + Y L++P I D T V +T F EAESIL +T EV
Sbjct: 81 I--CNFCGELVDEPRYLLMIPGRIMDDTGEVMITFFGREAESILEMTTDEV 129
>gi|403273262|ref|XP_003928439.1| PREDICTED: uncharacterized protein C16orf73 homolog [Saimiri
boliviensis boliviensis]
Length = 465
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 105/242 (43%), Gaps = 17/242 (7%)
Query: 88 DITLVDQSQASVTMTLWGKEAETFDASNKP---VIAVKAARVS--EFQGGKTLSLSMSSV 142
++ L D++++S MT W E+ P VI R+S +F+ T ++ ++
Sbjct: 193 EVRLYDETESSFAMTCWDNESILLAQCWMPRETVIFASDVRISFDKFRNCMTATVISKTI 252
Query: 143 LSLNPDIPECHKLQGWF--STQTNTRFEPV-SQRTGGMGGGAAGNLLLMREIQDQQLGMG 199
++ NPD PE + L + + +TN + + S + ++ + +++ + L
Sbjct: 253 ITTNPDTPEANILLNFIRENKETNALDDEIDSYFKESINLSTIVDVYTVEQLKVKALKNE 312
Query: 200 DKAD--YCSVRGIIQVFRGSNTTYKACPSQ--DCNKKVIDQNNGMYRCEKCNKEFNTFTY 255
KAD Y + I N T K ++ C V + +N C K + +F +
Sbjct: 313 GKADPFYGILYAYISTLNVDNETTKVVRNRCSSCGYIVNEASNMCTTCNKNSLDFKSVFV 372
Query: 256 RLILPVMIGDWTNSVW-VTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRA 314
+ + + D T ++ +L N AE LG T E T++ K AL Q++ R+
Sbjct: 373 SFEMLIDLTDHTGTLHSCSLTGNVAEKTLGCTVNEFLAMTDEQ---KTALKWQFLLE-RS 428
Query: 315 KL 316
K+
Sbjct: 429 KI 430
>gi|357451089|ref|XP_003595821.1| Replication factor A protein [Medicago truncatula]
gi|124360115|gb|ABN08131.1| Nucleic acid-binding, OB-fold, subgroup [Medicago truncatula]
gi|355484869|gb|AES66072.1| Replication factor A protein [Medicago truncatula]
Length = 185
Score = 40.4 bits (93), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 83/184 (45%), Gaps = 25/184 (13%)
Query: 484 LLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHST 542
L+D SG +I AT+ +F +++ KVY +S + + + ++Y+++F +T
Sbjct: 3 LMDASGNKIHATVRRTLIYKFEKDLQEGKVYSMSGFGVAANLGSYRTTKHEYKLNFQFNT 62
Query: 543 TVIPCNEDEV-GNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTY 601
V C ++ V ++ + V + E D +DV+G+ +TG Q+ Y
Sbjct: 63 KVKLCGKNSVPDDIYPISNSIVVFNS--EYDTDYLVDVMGM---------LTGVGMQREY 111
Query: 602 ------MKRDITLVDQSQASVTMTLWGKEAETFDA------SNKPVIAVKAARVSEFQGN 649
K ++ +TL+G+ A+ +A +NK ++ V A+V +QGN
Sbjct: 112 ERNGAKTKMVAMKLNYDGFKFKVTLFGQYADELNAFVAAGETNKVIVVVLLAKVKIWQGN 171
Query: 650 LLLM 653
+
Sbjct: 172 IFFF 175
>gi|402222340|gb|EJU02407.1| nucleic acid-binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 363
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 50/272 (18%), Positives = 98/272 (36%), Gaps = 21/272 (7%)
Query: 36 GNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAE-------LSSVTGKTNQKTYMKRD 88
G + + Y F + ++ + ++D++ + + + G + D
Sbjct: 69 GRILCIFYDFRRINSLEWFNDSRHVDLVAIIVRLGQPIKGMKKFKDQEGNERELITDHVD 128
Query: 89 ITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPD 148
+ L D S V + + F VI +K A + ++ +L + L
Sbjct: 129 VYLGDNSGEFVLLAAFDDYGPQFIGREGEVITIKNALIDKYGNSVSLKTKEFTTELLFES 188
Query: 149 IPECHK-LQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLL--------MREIQDQQLGMG 199
HK L+ WF + + + + TG + + ++EI +G
Sbjct: 189 GNHAHKVLKEWFESPGSIA-DTLCLMTGTYSADSVPDSWFTANIPTKTIKEIFTDGIGAH 247
Query: 200 DKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNG---MYRCEKCNKEFNTFTYR 256
VRG + + TY ACP+ +CNKK +G ++ C C + + +
Sbjct: 248 GVRSQVKVRGTVSFYSDREYTYLACPNPNCNKKAQVAESGNSTVWWCTHCKTVYLVPSEK 307
Query: 257 LILPVMIGDWTN-SVWVTLFQNEAESILGVTA 287
L + + D + W+T F E + G A
Sbjct: 308 YRLNMQMRDTMGLNNWITAFNGAMERLFGQYA 339
Score = 39.3 bits (90), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 64/338 (18%), Positives = 114/338 (33%), Gaps = 74/338 (21%)
Query: 486 DESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVI 545
DE+GEI A + D+ + +E K+Y I N L ++ F+ N+ ++ HS I
Sbjct: 5 DETGEIDAVAW-DKAVDLSERLEIGKLYQIPNAKLVDSSDCFTRTNHWLQVQI-HSNDKI 62
Query: 546 PCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAE-------LSSVTGKTNQ 598
+D G + + Y F + ++ + ++D++ + + + G +
Sbjct: 63 YELQDS-GRILCIFYDFRRINSLEWFNDSRHVDLVAIIVRLGQPIKGMKKFKDQEGNERE 121
Query: 599 KTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA-----------RVSEFQ 647
D+ L D S V + + F VI +K A + EF
Sbjct: 122 LITDHVDVYLGDNSGEFVLLAAFDDYGPQFIGREGEVITIKNALIDKYGNSVSLKTKEFT 181
Query: 648 GNLLL-------------------------------------------------MREIQD 658
LL ++EI
Sbjct: 182 TELLFESGNHAHKVLKEWFESPGSIADTLCLMTGTYSADSVPDSWFTANIPTKTIKEIFT 241
Query: 659 QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNG---MYRCEKCNKEF 715
+G VRG + + TY ACP+ +CNKK +G ++ C C +
Sbjct: 242 DGIGAHGVRSQVKVRGTVSFYSDREYTYLACPNPNCNKKAQVAESGNSTVWWCTHCKTVY 301
Query: 716 NTFTYRLILPVMIGDWTN-SVWVTLFQNEAESILGVTA 752
+ + L + + D + W+T F E + G A
Sbjct: 302 LVPSEKYRLNMQMRDTMGLNNWITAFNGAMERLFGQYA 339
>gi|357470041|ref|XP_003605305.1| Replication factor A protein [Medicago truncatula]
gi|355506360|gb|AES87502.1| Replication factor A protein [Medicago truncatula]
Length = 283
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 28/167 (16%)
Query: 15 NDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN--IDVLGVCIDAAEL 72
N+Y+++FT +T V V P+ Y F + S D N +DV+GV
Sbjct: 76 NEYKLNFTINTKVKLSKTVLV---PTNVYSFTSAYDVFNESYDNNFLVDVIGV------- 125
Query: 73 SSVTGKTNQKTY------MKRDITLVDQSQASVTMTLWGKEAETFDA------SNKPVIA 120
+TG ++ Y K ++ +D + TL+G+ E + S V+A
Sbjct: 126 --MTGVGVEREYERDGVKTKMNVIELDSNGYRFKCTLFGEYVEELSSFLSSGESQNVVVA 183
Query: 121 VKAARVSEFQGGKTLSLSMSSV-LSLNPDIPECHKLQGWF-STQTNT 165
+ A+V FQG L + SS ++ NP+I E +L+ F S TN+
Sbjct: 184 IMLAKVKLFQGKPALQNAFSSTRITFNPEIGETKELRKSFLSANTNS 230
>gi|391331574|ref|XP_003740219.1| PREDICTED: uncharacterized protein LOC100897820 [Metaseiulus
occidentalis]
Length = 813
Score = 40.4 bits (93), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 60 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVI 119
+ + V D EL + + + + K KR LVD ++ VT+ LW +A + V+
Sbjct: 699 VSLYCVVYDVGELQTYSCR-DGKVRTKRSARLVDDTRRIVTINLWSDQAHALNEKEDTVV 757
Query: 120 AVKAARVSEFQGGKTLSLSMSSVLSLNPD--IPECHKLQGWFSTQ 162
++ A + E+ G + LS ++V+ D P L W+ +
Sbjct: 758 FIRNAALREYNGKRELSTISNTVVEKADDNESPLIESLLKWYKEE 802
>gi|297811003|ref|XP_002873385.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319222|gb|EFH49644.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 195
Score = 40.4 bits (93), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 38 MPSVKYCFVPLKTIAEISPDENI-------DVLGVCIDAAELSSVTGKTNQKTYMKRDIT 90
+P +K+ FVP I E DV+GV + +S+ + + + KRDIT
Sbjct: 8 IPEIKFNFVPTDKFGYIRKSERPLLCYFIPDVIGVVQIVSPNNSIRRRNDNELIPKRDIT 67
Query: 91 LVDQSQASVTMTLW-----GKEAETFDASNKPVIAVKAARVSEFQGG 132
+ D+++ +V ++LW G E D +A K+ + +FQ G
Sbjct: 68 VADETKKTVVVSLWNDLPTGIGQELLD------MADKSLKAGDFQLG 108
>gi|77556294|gb|ABA99090.1| hypothetical protein LOC_Os12g32690 [Oryza sativa Japonica Group]
Length = 1312
Score = 40.4 bits (93), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 7/130 (5%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL--DESGEIRATMFNDECNR 502
I SL T++ R++ + E+++ L I L+ D+ G A M C++
Sbjct: 615 IASLELSDGNPTLRIRISR---LWEYHDQNDETNLHHIGLVLVDQKGSSIAAMIYPPCDK 671
Query: 503 -FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYC 561
F +I + KVY ++ +KP K + ++N ++FT +TV C D N Y
Sbjct: 672 KFKPLITEGKVYLLTYYRVKPCTKHYWPVDNKLAITFTWWSTVEEC-VDVPDNFAQYAYS 730
Query: 562 FVPLKTIAEI 571
P + +
Sbjct: 731 LTPFNELRSL 740
>gi|433639732|ref|YP_007285492.1| single-stranded DNA-binding protein [Halovivax ruber XH-70]
gi|433291536|gb|AGB17359.1| single-stranded DNA-binding protein [Halovivax ruber XH-70]
Length = 486
Score = 40.4 bits (93), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 99/214 (46%), Gaps = 26/214 (12%)
Query: 420 NGSNGVHNNV--AIPR---QASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNAR 474
+G +GV NV A P + V TH + +L+ + T+ V IR ++
Sbjct: 144 DGYSGVEVNVDEAQPDDDTEIEVNVSDTHTVEALTIGLSDVTLVGEVLETGSIRTFDRDD 203
Query: 475 GS-GKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINND 533
GS GK+ ++ L DE+G +R T+++++ + I+ +V + + +K +
Sbjct: 204 GSEGKVSNLTLGDETGRVRVTLWDEQAD-LATEIDDSEVVEVVDGYVKERDGNL------ 256
Query: 534 YEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKT-IAEISPDENIDVLGVCIDAAELSSV 592
E+ + TV +ED V+Y VP T I ++ D+ +D+ GV A + +
Sbjct: 257 -ELHVGNQGTVEVVDED-------VQY--VPDSTPIEDVEIDQTVDLKGVVRSADPVRTF 306
Query: 593 TGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE 626
+ + R+I + D + + + LWG++A+
Sbjct: 307 D-RDDGSEGQVRNIRVQDAT-GDLRVALWGEKAD 338
>gi|119606012|gb|EAW85606.1| hypothetical protein MGC35212, isoform CRA_c [Homo sapiens]
Length = 471
Score = 40.4 bits (93), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 103/242 (42%), Gaps = 17/242 (7%)
Query: 88 DITLVDQSQASVTMTLWGKEAETFDASNKP---VIAVKAARVS--EFQGGKTLSLSMSSV 142
++ L D++++S MT W E+ S P VI R++ +F+ T ++ ++
Sbjct: 195 EVRLYDETESSFAMTCWDNESILLAQSWMPRETVIFASDVRINFDKFRNCMTATVISKTI 254
Query: 143 LSLNPDIPECHKLQGWFSTQTNTRF---EPVSQRTGGMGGGAAGNLLLMREIQDQQLGMG 199
++ NPDIPE + L + T E S + ++ + +++ + L
Sbjct: 255 ITTNPDIPEANILLNFIRENKETNVLDDEIDSYFKESINLSTIVDVYTVEQLKGKALKNE 314
Query: 200 DKAD--YCSVRGIIQVFRGSNTTYKACPSQ--DCNKKVIDQNNGMYRCEKCNKEFNTFTY 255
KAD Y + I + T K ++ C V + +N C K + +F +
Sbjct: 315 GKADPSYGILYAYISTLNIDDETTKVVRNRCSSCGYIVNEASNMCTTCNKNSLDFKSVFL 374
Query: 256 RLILPVMIGDWTNSVW-VTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRA 314
+ + + D T ++ +L + AE LG T E T++ K AL Q++ R+
Sbjct: 375 SFHVLIDLTDHTGTLHSCSLTGSVAEETLGCTVHEFLAMTDEQ---KTALKWQFLLE-RS 430
Query: 315 KL 316
K+
Sbjct: 431 KI 432
>gi|357488491|ref|XP_003614533.1| hypothetical protein MTR_5g055160 [Medicago truncatula]
gi|355515868|gb|AES97491.1| hypothetical protein MTR_5g055160 [Medicago truncatula]
Length = 270
Score = 40.4 bits (93), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 15/147 (10%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGK----LFSIDLLDESGE-IRATMFNDE 499
I ++SP + WT+ RV +R W K + L++ G+ I A++
Sbjct: 8 ISNVSPRKQSWTLVVRV-----VRAWFGQDYKNKKLPFFMELVLMNRKGDRIGASIRRTL 62
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVK 559
+F + +++ V+ IS+ + N + N+Y++ FT +T V + +P+
Sbjct: 63 IYKFKEQLQEGMVFTISSFNVASNNGSYRPSCNEYKLDFTINTKV---KLSKTVLVPTNV 119
Query: 560 YCFVPLKTIAEISPDEN--IDVLGVCI 584
Y F P + S D N +DV+GV I
Sbjct: 120 YSFTPAPHVFNESYDNNYLVDVIGVMI 146
>gi|254675138|ref|NP_001157032.1| meiosis-specific with OB domain-containing protein isoform 1 [Homo
sapiens]
Length = 471
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 103/242 (42%), Gaps = 17/242 (7%)
Query: 88 DITLVDQSQASVTMTLWGKEAETFDASNKP---VIAVKAARVS--EFQGGKTLSLSMSSV 142
++ L D++++S MT W E+ S P VI R++ +F+ T ++ ++
Sbjct: 195 EVRLYDETESSFAMTCWDNESILLAQSWMPRETVIFASDVRINFDKFRNCMTATVISKTI 254
Query: 143 LSLNPDIPECHKLQGWFSTQTNTRF---EPVSQRTGGMGGGAAGNLLLMREIQDQQLGMG 199
++ NPDIPE + L + T E S + ++ + +++ + L
Sbjct: 255 ITTNPDIPEANILLNFIRENKETNVLDDEIDSYFKESINLSTIVDVYTVEQLKGKALKNE 314
Query: 200 DKAD--YCSVRGIIQVFRGSNTTYKACPSQ--DCNKKVIDQNNGMYRCEKCNKEFNTFTY 255
KAD Y + I + T K ++ C V + +N C K + +F +
Sbjct: 315 GKADPSYGILYAYISTLNIDDETTKVVRNRCSSCGYIVNEASNMCTTCNKNSLDFKSVFL 374
Query: 256 RLILPVMIGDWTNSVW-VTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRA 314
+ + + D T ++ +L + AE LG T E T++ K AL Q++ R+
Sbjct: 375 SFHVLIDLTDHTGTLHSCSLTGSVAEETLGCTVHEFLAMTDEQ---KTALKWQFLLE-RS 430
Query: 315 KL 316
K+
Sbjct: 431 KI 432
>gi|4263834|gb|AAD15477.1| putative replication protein A1 [Arabidopsis thaliana]
Length = 527
Score = 40.0 bits (92), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 514 YISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI--AEI 571
+I L A+ +F N+ Y+M+F T V+ C N + P I E+
Sbjct: 24 FIEIFGLTYASGQFRPTNHLYKMAFHVRTKVMGCASVSDSNFLT----LAPFSKIQSGEL 79
Query: 572 SPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE 626
+P +D +G I EL + + N K K D + DQ + +TLWG A+
Sbjct: 80 NPHMLVDAIGQIITVGELEEL--EANNKPTTKIDFEIRDQMDERMQVTLWGTYAQ 132
Score = 39.7 bits (91), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 8/106 (7%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTI--AEISPDENIDVL 63
A+ +F N+ Y+M+F T V+ C N + P I E++P +D +
Sbjct: 33 ASGQFRPTNHLYKMAFHVRTKVMGCASVSDSNFLT----LAPFSKIQSGELNPHMLVDAI 88
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE 109
G I EL + + N K K D + DQ + +TLWG A+
Sbjct: 89 GQIITVGELEEL--EANNKPTTKIDFEIRDQMDERMQVTLWGTYAQ 132
>gi|395646800|ref|ZP_10434660.1| nucleic acid binding OB-fold tRNA/helicase-type [Methanofollis
liminatans DSM 4140]
gi|395443540|gb|EJG08297.1| nucleic acid binding OB-fold tRNA/helicase-type [Methanofollis
liminatans DSM 4140]
Length = 603
Score = 40.0 bits (92), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 95/229 (41%), Gaps = 28/229 (12%)
Query: 567 TIAEISPDENI--DVLGVCIDAAELSSVTGKTNQKTYMKRD----ITLVDQSQASVTMTL 620
++ EI D I V+ VC A ++SV K Q+ + + LV +V T+
Sbjct: 344 SVIEIESDTPIVPAVIPVCDLAPGVASVRVKMVQEWEARHERILQTGLVGDESGTVKFTI 403
Query: 621 WGKEAETFDASNKPVIAVKAARVSEFQGNL--------LLMREIQDQQLGMGDKADYCSV 672
W KE S V + V E+QG L +L E ++G G
Sbjct: 404 W-KEEGVEPLSPNMVYTIYYTTVDEYQGRLSITLNGAMVLAEEGATLEVGTGG---MTLT 459
Query: 673 RGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWT 732
I+ + GS K CP + CN+ + +N C ++ N F Y L + ++ D
Sbjct: 460 GAIVNIGPGSGLI-KRCPVEGCNRVLSKRNY----C-PVHEVQNDFRYDLRIKAVLDDGV 513
Query: 733 NSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAKL 781
+ + + + E++ G+T ++ ++ ++ P +F +RLR L
Sbjct: 514 KAHNILMQKEVVEAVAGLTLEDAVKTVQESPLGMDDIF----YRLRDAL 558
>gi|357488167|ref|XP_003614371.1| hypothetical protein MTR_5g050810 [Medicago truncatula]
gi|355515706|gb|AES97329.1| hypothetical protein MTR_5g050810 [Medicago truncatula]
Length = 186
Score = 40.0 bits (92), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 18/194 (9%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDE-SGEIRATMFNDECNR 502
PI ++S + + RV + IRE S ++ L+DE G I AT D +
Sbjct: 7 PISAVSGGRKNLKMCVRVAHIWLIRE-KKVPASIIFMNMLLVDEKGGRIHATARKDLVAK 65
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
F M+++ Y + N + + ++ +++S H++T + + +P + F
Sbjct: 66 FRSMVQEGGTYQLENAIVGFNESPYKVTSHKHKLSMMHNSTFTKVH---LPAIPMNVFEF 122
Query: 563 VPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG 622
P I + DE + ++ T K +K+ + D+TL D + +LWG
Sbjct: 123 KPFNEILSSTADE--------VSTGDIRE-TEKDGRKSRVI-DLTLKDLENNRLHCSLWG 172
Query: 623 KEAE---TFDASNK 633
+ A+ TF NK
Sbjct: 173 EHADKIVTFGIMNK 186
>gi|448376675|ref|ZP_21559675.1| replication factor A [Halovivax asiaticus JCM 14624]
gi|445656411|gb|ELZ09245.1| replication factor A [Halovivax asiaticus JCM 14624]
Length = 476
Score = 39.7 bits (91), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 99/214 (46%), Gaps = 26/214 (12%)
Query: 420 NGSNGVHNNV--AIPR---QASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNAR 474
+G +GV NV A P + V TH + +L+ + T+ V IR ++
Sbjct: 134 DGYSGVEVNVDEAQPDDDTEIEVNVSDTHTVENLTIGLSDVTLVGEVLETGSIRTFDRDD 193
Query: 475 GS-GKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINND 533
GS GK+ ++ L DE+G +R T+++++ + I+ +V + + +K +
Sbjct: 194 GSKGKVSNLTLGDETGRVRVTLWDEQAD-LATEIDDSEVVEVVDGYVKERDGNL------ 246
Query: 534 YEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKT-IAEISPDENIDVLGVCIDAAELSSV 592
E+ + TV +ED V+Y VP T I ++ D+ +D+ GV A + +
Sbjct: 247 -ELHVGNQGTVEVVDED-------VQY--VPDSTPIEDVEIDQTVDLKGVVRSADPVRTF 296
Query: 593 TGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE 626
+ + R+I + D + + + LWG++A+
Sbjct: 297 D-RDDGSEGQVRNIRVQDAT-GDLRVALWGEKAD 328
>gi|302825612|ref|XP_002994408.1| hypothetical protein SELMODRAFT_432333 [Selaginella moellendorffii]
gi|300137673|gb|EFJ04528.1| hypothetical protein SELMODRAFT_432333 [Selaginella moellendorffii]
Length = 203
Score = 39.7 bits (91), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 71/181 (39%), Gaps = 26/181 (14%)
Query: 98 SVTMTLWGKEAETFDA--------SNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDI 149
S+ M LW +AE + KP + +K +R+S++ G K++S++ S L ++P++
Sbjct: 41 SIDMCLWDSKAEDEGSEIEEKPGRGQKPTVCLKGSRISDYNG-KSISVTGGSTLLVDPEL 99
Query: 150 PECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRG 209
+ L W NT T + E+ L GD
Sbjct: 100 EDVSWLCEWMVASYNTTI--FVHVTNSSSKAVISGTKTVSEMLSINLKTGDFY----YPA 153
Query: 210 IIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNS 269
++V GS C KKV + M++C C+ + ++ L + I D T
Sbjct: 154 CVKVVNGSQ----------CGKKVTQVSESMWQC-TCDTDSGDIHFKYALHLCILDSTGH 202
Query: 270 V 270
+
Sbjct: 203 I 203
>gi|351711303|gb|EHB14222.1| hypothetical protein GW7_05746 [Heterocephalus glaber]
Length = 471
Score = 39.7 bits (91), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 98/237 (41%), Gaps = 14/237 (5%)
Query: 79 TNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKP---VIAVKAARVS--EFQGGK 133
++Q+ + ++ L D++++S MT W E S P VI R++ +F+
Sbjct: 186 SDQRKGQRCEVKLYDETESSFAMTCWDNEFILLAQSWMPQETVIFASDVRINFDKFRNCM 245
Query: 134 TLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRF---EPVSQRTGGMGGGAAGNLLLMRE 190
T ++ ++++ NPD PE + L + T E S + ++ + +
Sbjct: 246 TATVISKTIITTNPDTPEANILLNFIRENRETNILTDENASYLKESINLNTIVDIYTVEQ 305
Query: 191 IQDQQLGMGDKAD--YCSVRGIIQVFRGSNTTYKACPSQ--DCNKKVIDQNNGMYRCEKC 246
++ + L KA+ Y + I + T K ++ C V + +N C K
Sbjct: 306 LKAKALKNEGKAEPFYGILYAYISTLNIDDETVKVVRNKCSSCGYIVNEVSNTCTTCNKD 365
Query: 247 NKEFNTFTYRLILPVMIGDWTNSVW-VTLFQNEAESILGVTAQE-VGESTEDHPALK 301
+ F + + V I D T ++ +L N AE LG T E + + E ALK
Sbjct: 366 SSGFKSVFLSFHMLVDITDHTGTLHSCSLTGNVAEDTLGCTVDEFLAMTDEQKTALK 422
>gi|357459409|ref|XP_003599985.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
gi|355489033|gb|AES70236.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
Length = 537
Score = 39.7 bits (91), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 13/145 (8%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSID--LLDESG-EIRATMFNDEC 500
PI +S + W IKARV + ++N + FSI+ L+D G I A++
Sbjct: 7 PISQISSSKPAWNIKARVVRLWKVSDFNR---NTLPFSIEMVLMDSEGSRIHASIKKTLL 63
Query: 501 NRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIP-CNEDEVGNMPSVK 559
+F I + KVY N + + + ++ Y+++F T + C G+
Sbjct: 64 YKFQSEIREGKVYSFENMGIAANGGSYKTTHHPYKLNFQFGTKCLSLCGALVSGS----D 119
Query: 560 YCFVPLKTIAEISPDEN--IDVLGV 582
+ FVP+ I S D + +DV+G+
Sbjct: 120 FKFVPISDIVGGSYDCDYLVDVIGM 144
>gi|347481642|gb|AEO97628.1| hypothetical protein ENVG_00348 [Emiliania huxleyi virus 84]
gi|347600587|gb|AEP15074.1| hypothetical protein EOVG_00137 [Emiliania huxleyi virus 88]
Length = 211
Score = 39.7 bits (91), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 476 SGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYE 535
+G + + D++G I T +ND +F ++E ++ Y IS T+K AN + + + +E
Sbjct: 142 NGFMCKFRIQDDTGNIGMTAWNDTYEKFDQLLEPNQTYVISGMTVKKANPAYET-QHTHE 200
Query: 536 MSFTHSTTV 544
++ ++TTV
Sbjct: 201 ITLKNTTTV 209
>gi|357439657|ref|XP_003590106.1| hypothetical protein MTR_1g044430 [Medicago truncatula]
gi|355479154|gb|AES60357.1| hypothetical protein MTR_1g044430 [Medicago truncatula]
Length = 552
Score = 39.7 bits (91), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 197 GMGDKAD--YCSVRGIIQVF-RGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTF 253
G+ D A+ + +V G + V S+ Y +C CNKKV + MY C KCNK
Sbjct: 197 GLKDCAEEKFFAVFGTVNVIVDDSDWWYTSCVV--CNKKVY-PDEKMYFCSKCNKHVLNV 253
Query: 254 TYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGES 293
T R ++ V+ D T+S LF +A + T ++ ES
Sbjct: 254 TPRYMIKVV--DHTDSATFVLFDRDAAELFKKTCADMIES 291
Score = 39.7 bits (91), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 662 GMGDKAD--YCSVRGIIQVF-RGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTF 718
G+ D A+ + +V G + V S+ Y +C CNKKV + MY C KCNK
Sbjct: 197 GLKDCAEEKFFAVFGTVNVIVDDSDWWYTSCVV--CNKKVY-PDEKMYFCSKCNKHVLNV 253
Query: 719 TYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGES 758
T R ++ V+ D T+S LF +A + T ++ ES
Sbjct: 254 TPRYMIKVV--DHTDSATFVLFDRDAAELFKKTCADMIES 291
>gi|73852605|ref|YP_293889.1| putative nucleic acid-binding protein [Emiliania huxleyi virus 86]
gi|72415321|emb|CAI65558.1| putative nucleic acid-binding protein [Emiliania huxleyi virus 86]
gi|283481349|emb|CAZ69465.1| putative nucleic acid-binding protein [Emiliania huxleyi virus
99B1]
Length = 202
Score = 39.3 bits (90), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 476 SGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYE 535
+G + + D++G I T +ND +F ++E ++ Y IS T+K AN + + + +E
Sbjct: 133 NGFMCKFRIQDDTGNIGMTAWNDTYEKFDQLLEPNQTYVISGMTVKKANPVYET-QHTHE 191
Query: 536 MSFTHSTTV 544
++ ++TTV
Sbjct: 192 ITLKNTTTV 200
>gi|348538802|ref|XP_003456879.1| PREDICTED: uncharacterized protein CXorf57 homolog [Oreochromis
niloticus]
Length = 855
Score = 39.3 bits (90), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 15/144 (10%)
Query: 482 IDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHS 541
++ D+SG + ++N+ C F+ + V Y+ N TLK + S D+ T +
Sbjct: 280 FEVADQSGTMSLVLWNELCPEFYQRLNVGTVLYLQNYTLKQSYSNRSRPQMDHHRMKTFN 339
Query: 542 TTVI---PCNEDEV------------GNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDA 586
+ I P N V +P + Y F + +++ + D++G+
Sbjct: 340 SVEICLNPRNPASVITVVSPKSILPQWGLPDISYQFTARSELEKLANNSACDIIGLVTFV 399
Query: 587 AELSSVTGKTNQKTYMKRDITLVD 610
+ V K +K + R + VD
Sbjct: 400 GRVERVKSKGKEKFWTYRWVHAVD 423
>gi|332240026|ref|XP_003269191.1| PREDICTED: meiosis-specific with OB domain-containing protein
isoform 1 [Nomascus leucogenys]
Length = 471
Score = 38.9 bits (89), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 113/270 (41%), Gaps = 18/270 (6%)
Query: 60 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKP-- 117
I+VL E T ++++ + ++ L D++++S MT W E+ S P
Sbjct: 168 INVLAAVKSVGETKYFT-TSDRRKGQRCEVRLYDETESSFAMTCWDNESILLAQSWMPRE 226
Query: 118 -VIAVKAARVS--EFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRF---EPVS 171
VI R+S +F+ T ++ ++++ NPD PE + L + T E S
Sbjct: 227 TVIFASDIRISFDKFRNCMTATVISKTIITTNPDTPEANILLNFIRENKETNIMDDEIDS 286
Query: 172 QRTGGMGGGAAGNLLLMREIQDQQLGMGDKAD--YCSVRGIIQVFRGSNTTYKACPSQ-- 227
+ ++ + +++ + L KAD Y + I + T K ++
Sbjct: 287 YFKESINLNTIVDVYTVEQLKGKALKNEGKADPSYGILYAYISTLNIDDETTKVVRNRCS 346
Query: 228 DCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW-VTLFQNEAESILGVT 286
C V + +N C K + +F + + + + D T ++ +L + AE LG T
Sbjct: 347 SCGYIVNEASNMCATCNKNSLDFKSVFLSFDMLIDLTDHTGTLHSCSLTGSVAEETLGCT 406
Query: 287 AQEVGESTEDHPALKKALFTQYIFRLRAKL 316
E T++ K AL Q++ R+K+
Sbjct: 407 VNEFLAMTDEQ---KTALKWQFLLE-RSKI 432
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.131 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,058,911,459
Number of Sequences: 23463169
Number of extensions: 508576562
Number of successful extensions: 1462835
Number of sequences better than 100.0: 981
Number of HSP's better than 100.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 331
Number of HSP's that attempted gapping in prelim test: 1456132
Number of HSP's gapped (non-prelim): 2763
length of query: 786
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 635
effective length of database: 8,816,256,848
effective search space: 5598323098480
effective search space used: 5598323098480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 81 (35.8 bits)