BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15132
(786 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24492|RFA1_DROME Replication protein A 70 kDa DNA-binding subunit OS=Drosophila
melanogaster GN=RpA-70 PE=1 SV=1
Length = 603
Score = 408 bits (1048), Expect = e-113, Method: Compositional matrix adjust.
Identities = 216/524 (41%), Positives = 300/524 (57%), Gaps = 69/524 (13%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DG NS+AMLA+QLN + +G L EFTIVQ+ +Y+ S V A R VLII EL +
Sbjct: 46 ISDGKYFNSYAMLASQLNVMQHNGELEEFTIVQLDKYVTSLVGKDGAGKR-VLIISELTV 104
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQ-TPAATNTNGSNGVHNN-------VAIPRQAS 436
+ PG E+ KIG P +N++ Q P T+ S + I +S
Sbjct: 105 VNPGAEVKSKIGEP----VTYENAAKQDLAPKPAVTSNSKPIAKKEPSHNNNNNIVMNSS 160
Query: 437 APVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMF 496
THPI SLSPYQNKW IKARVT+K+ IR W+NARG GKLFS+DL+DESGEIRAT F
Sbjct: 161 INSGMTHPISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDLMDESGEIRATAF 220
Query: 497 NDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMP 556
++C++F+D+I+ D VYYIS C LKPANK++SS+NN YEM+F+ T V C + + +P
Sbjct: 221 KEQCDKFYDLIQVDSVYYISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIP 280
Query: 557 SVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
+KY VP+ ++ + +D +G+C + EL S +T K + KRDITLVD S +++
Sbjct: 281 EIKYNLVPISDVSGMENKAAVDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAI 340
Query: 617 TMTLWGKEAETFDASNKPVIAVKAARVSEFQ----------------------------- 647
++TLWG +A FD +PVI VK R++EF
Sbjct: 341 SLTLWGDDAVNFDGHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWF 400
Query: 648 --------GNLLLMR--------------EIQDQQLGMGDKADYCSVRGIIQVFRGSNTT 685
N++ R + + + LG GDK DY + ++ + + N
Sbjct: 401 DNGGGDSVANMVSARTGGGSFSTEWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQENAF 460
Query: 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
Y+ACP DCNKKV+D+ N +RCEKCN F F YRL++ + IGDWT++ WV+ F E
Sbjct: 461 YRACPQSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGE 520
Query: 746 SILGVTAQEVGESTEDHPALKKAL-----FTQYIFRLRAKLEHY 784
+LG T+QEVGE+ E+ PA + + FT +IF+LR K E Y
Sbjct: 521 QLLGHTSQEVGEALENDPAKAEQIFSALNFTSHIFKLRCKNEVY 564
Score = 279 bits (714), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 138/321 (42%), Positives = 203/321 (63%), Gaps = 8/321 (2%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK++SS+NN YEM+F+ T V C + + +P +KY VP+ ++ + +D +G
Sbjct: 246 PANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNLVPISDVSGMENKAAVDTIG 305
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+C + EL S +T K + KRDITLVD S +++++TLWG +A FD +PVI VK
Sbjct: 306 ICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWGDDAVNFDGHVQPVILVKGT 365
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST-QTNTRFEPVSQRTGGMGGGAAG 183
R++EF GGK+LSL S++ +NPDIPE HKL+GWF ++ VS RTG GG +
Sbjct: 366 RINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWFDNGGGDSVANMVSARTG--GGSFST 423
Query: 184 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
+ +++ + + LG GDK DY + ++ + + N Y+ACP DCNKKV+D+ N +RC
Sbjct: 424 EWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQENAFYRACPQSDCNKKVVDEGNDQFRC 483
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKA 303
EKCN F F YRL++ + IGDWT++ WV+ F E +LG T+QEVGE+ E+ PA +
Sbjct: 484 EKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLGHTSQEVGEALENDPAKAEQ 543
Query: 304 L-----FTQYIFRLRAKLEHY 319
+ FT +IF+LR K E Y
Sbjct: 544 IFSALNFTSHIFKLRCKNEVY 564
>sp|P27694|RFA1_HUMAN Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens
GN=RPA1 PE=1 SV=2
Length = 616
Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust.
Identities = 210/543 (38%), Positives = 303/543 (55%), Gaps = 88/543 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ + LS + QI R+IV+ + G R V+I++EL +
Sbjct: 46 MSDGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDG----RRVVILMELEV 101
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNT---------NGSNGVHNNVAIPR-- 433
+K +G KIGNP P N A + NGS+G+ + V+
Sbjct: 102 LKSAEAVGVKIGNPVPYNEGLGQPQVAPPAPAASPAASSRPQPQNGSSGMGSTVSKAYGA 161
Query: 434 -----QASAPVV---------QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
+A+ P + + PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKL
Sbjct: 162 SKTFGKAAGPSLSHTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKL 221
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FS++L+DESGEIRAT FN++ ++F +IE +KVYY S TLK ANK+F+++ NDYEM+F
Sbjct: 222 FSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFN 281
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
+ T+V+PC +D ++P+V++ F + + S D +D++G+C + + +T ++N +
Sbjct: 282 NETSVMPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNR 339
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL-------- 651
KR+I L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G L
Sbjct: 340 EVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTI 399
Query: 652 --------------------------------------------LMREIQDQQLGMGDKA 667
+ E++ + LG GDK
Sbjct: 400 IANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGSNTNWKTLYEVKSENLGQGDKP 459
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF F YR+IL V
Sbjct: 460 DYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVN 519
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLE 782
I D+ + WVT FQ AE+ILG A +GE + + + A F +IFR+R K+E
Sbjct: 520 IADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVE 579
Query: 783 HYN 785
YN
Sbjct: 580 TYN 582
Score = 283 bits (723), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 141/328 (42%), Positives = 208/328 (63%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F + + S D +D++G+
Sbjct: 265 ANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGI 322
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T ++N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 323 CKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGAR 382
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + NPDIPE +KL+GWF + + VS ++GG+GG
Sbjct: 383 VSDF-GGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQA-LDGVSISDLKSGGVGGSNT 440
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 441 -NWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 499
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG A +GE + +
Sbjct: 500 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFE 559
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F +IFR+R K+E YN +I
Sbjct: 560 EVFQNANFRSFIFRVRVKVETYNDESRI 587
>sp|Q8VEE4|RFA1_MOUSE Replication protein A 70 kDa DNA-binding subunit OS=Mus musculus
GN=Rpa1 PE=2 SV=1
Length = 623
Score = 377 bits (967), Expect = e-103, Method: Compositional matrix adjust.
Identities = 208/552 (37%), Positives = 300/552 (54%), Gaps = 97/552 (17%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ G L+ + Q+ ++IV+ + G R V+++++L +
Sbjct: 46 MSDGLNTLSSFMLATQLNTLVEGGQLASNCVCQVHKFIVNTLKDG----RKVVVLMDLEV 101
Query: 385 IKPGTEIGFKIGNPQPLNTN---------------TDNSSTQQTPAATN---TNGSNGVH 426
+K ++G KIGNP P N + ++ TP A+ NGS G+
Sbjct: 102 MKSAEDVGLKIGNPVPYNEGYGQQQQQQQQQQQQAVPSPASAATPPASKPQPQNGSLGMG 161
Query: 427 NNVAIPRQASAPV----------------VQTHPIVSLSPYQNKWTIKARVTNKTPIREW 470
+ A AS P + PI SL+PYQ+KWTI ARVTNK+ IR W
Sbjct: 162 STAAKAYGASKPFGKPAGTGLLQPSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTW 221
Query: 471 NNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSI 530
+N+RG GKLFS++L+DESGEIRAT FN++ ++F +IE +KVYY S LK ANK+FS++
Sbjct: 222 SNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGALKIANKQFSAV 281
Query: 531 NNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELS 590
NDYEM+F + T+V+PC + ++P+V++ F + + + D +D++G+C +
Sbjct: 282 KNDYEMTFNNETSVLPCEDGH--HLPTVQFDFTGIGDLESKAKDALVDIIGICKSYEDSI 339
Query: 591 SVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG-- 648
+T K+N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G
Sbjct: 340 KITVKSNNREVAKRNIYLMDMSGKVVTTTLWGEDADKFDGSRQPVMAIKGARVSDFGGRS 399
Query: 649 --------------------------------------------------NLLLMREIQD 658
N + E +
Sbjct: 400 LSVLSSSTVIVNPDIPEAYKLRGWFDSEGQALDGVSISDHRSGGAGGGNTNWKTLHEAKS 459
Query: 659 QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTF 718
+ LG GDKADY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC++EF F
Sbjct: 460 ENLGQGDKADYFSTVAAVVFLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDREFPNF 519
Query: 719 TYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQY 773
YR+IL I D+ + WVT FQ AE+ILG +GE E + + A F +
Sbjct: 520 KYRMILSANIADFQENQWVTCFQESAEAILGQNTMYLGELKEKNEQAFEEVFQNANFRSF 579
Query: 774 IFRLRAKLEHYN 785
FR+R KLE YN
Sbjct: 580 TFRIRVKLETYN 591
Score = 276 bits (706), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 143/328 (43%), Positives = 206/328 (62%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+FS++ NDYEM+F + T+V+PC + ++P+V++ F + + + D +D++G+
Sbjct: 274 ANKQFSAVKNDYEMTFNNETSVLPCEDGH--HLPTVQFDFTGIGDLESKAKDALVDIIGI 331
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + +T K+N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 332 CKSYEDSIKITVKSNNREVAKRNIYLMDMSGKVVTTTLWGEDADKFDGSRQPVMAIKGAR 391
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + +NPDIPE +KL+GWF ++ + VS R+GG GGG
Sbjct: 392 VSDF-GGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQA-LDGVSISDHRSGGAGGGNT 449
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E + + LG GDKADY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 450 -NWKTLHEAKSENLGQGDKADYFSTVAAVVFLRKENCMYQACPTQDCNKKVIDQQNGLYR 508
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC++EF F YR+IL I D+ + WVT FQ AE+ILG +GE E +
Sbjct: 509 CEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAILGQNTMYLGELKEKNEQAFE 568
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F + FR+R KLE YN +I
Sbjct: 569 EVFQNANFRSFTFRIRVKLETYNDESRI 596
>sp|Q5ZJJ2|RFA1_CHICK Replication protein A 70 kDa DNA-binding subunit OS=Gallus gallus
GN=RPA1 PE=2 SV=1
Length = 614
Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust.
Identities = 213/541 (39%), Positives = 299/541 (55%), Gaps = 86/541 (15%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGVN S MLATQLN ++ + LS I Q+ R+IV+ + G R V+I+++L++
Sbjct: 45 MSDGVNTLSSFMLATQLNPLVEEERLSAHCICQVNRFIVNSLKDG----RRVVILMDLDV 100
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAI-----PR------ 433
+K +G +GNP P N + A N N+++ P+
Sbjct: 101 LKTADMVGGTVGNPVPYNEGQGQQRSSAPTANAAPNKPQQQDGNLSVAGSAAPKYHAPSN 160
Query: 434 ---QASAPV-VQTH--------PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFS 481
+ASAP V+T PI SL+PYQ+KWTI ARVT K IR W+N+RG GKLFS
Sbjct: 161 QFSKASAPSSVKTPGGTQSKVVPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFS 220
Query: 482 IDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHS 541
I+L+DESGEIRAT FND+ ++F +IE +KVYY + LK ANK+++++ NDYE++F +
Sbjct: 221 IELVDESGEIRATAFNDQADKFFPLIELNKVYYFTKGNLKTANKQYTAVKNDYEITFNNE 280
Query: 542 TTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTY 601
T+V+PC D+ ++PSV++ FV + + D +DV+G+C +++ + K + +
Sbjct: 281 TSVVPC--DDAQHLPSVQFDFVSISDLENTPKDSIVDVIGICKSYEDVTKIVVKASNREV 338
Query: 602 MKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG------------- 648
KR++ L+D S VT TLWG EAE FD S +PVIA+K ARVS+F G
Sbjct: 339 SKRNVHLMDTSGKLVTATLWGNEAEKFDGSRQPVIAIKGARVSDFGGRSLSVLSSSTVVV 398
Query: 649 ---------------------------------------NLLLMREIQDQQLGMGDKADY 669
N + E + ++LG GDKADY
Sbjct: 399 NPDSPEAFKLRGWFDSEGQLLECASISDVRGGSASGVNTNWKTLYEAKSERLGQGDKADY 458
Query: 670 CSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIG 729
S G I R N Y+ACPSQDCNKKVIDQ NG+YRCEKC++EF F YR++L V I
Sbjct: 459 FSCVGTIVHLRKENCMYQACPSQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMMLLVTIA 518
Query: 730 DWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHY 784
D + WVT FQ AE ILG +A +GE + + + A F Y F++R KLE Y
Sbjct: 519 DSLDYQWVTCFQESAEFILGQSATFLGELKDKNEQAFEEVFQNANFNTYEFKIRVKLETY 578
Query: 785 N 785
N
Sbjct: 579 N 579
Score = 272 bits (695), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 142/326 (43%), Positives = 202/326 (61%), Gaps = 9/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+++++ NDYE++F + T+V+PC D+ ++PSV++ FV + + D +DV+G+
Sbjct: 262 ANKQYTAVKNDYEITFNNETSVVPC--DDAQHLPSVQFDFVSISDLENTPKDSIVDVIGI 319
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C +++ + K + + KR++ L+D S VT TLWG EAE FD S +PVIA+K AR
Sbjct: 320 CKSYEDVTKIVVKASNREVSKRNVHLMDTSGKLVTATLWGNEAEKFDGSRQPVIAIKGAR 379
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGMGGGAAGN 184
VS+F GG++LS+ SS + +NPD PE KL+GWF ++ +S GG G N
Sbjct: 380 VSDF-GGRSLSVLSSSTVVVNPDSPEAFKLRGWFDSEGQLLECASISDVRGGSASGVNTN 438
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ E + ++LG GDKADY S G I R N Y+ACPSQDCNKKVIDQ NG+YRCE
Sbjct: 439 WKTLYEAKSERLGQGDKADYFSCVGTIVHLRKENCMYQACPSQDCNKKVIDQQNGLYRCE 498
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PA 299
KC++EF F YR++L V I D + WVT FQ AE ILG +A +GE + +
Sbjct: 499 KCDREFPNFKYRMMLLVTIADSLDYQWVTCFQESAEFILGQSATFLGELKDKNEQAFEEV 558
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F Y F++R KLE YN +I
Sbjct: 559 FQNANFNTYEFKIRVKLETYNDESRI 584
>sp|Q5R7Q4|RFA1_PONAB Replication protein A 70 kDa DNA-binding subunit OS=Pongo abelii
GN=RPA1 PE=2 SV=1
Length = 616
Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust.
Identities = 207/543 (38%), Positives = 299/543 (55%), Gaps = 88/543 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S M ATQLN ++ LS + QI R+IV+ + G R V+I++EL +
Sbjct: 46 MSDGLNTLSSFMSATQLNPLVEQEQLSSNCVCQINRFIVNTLKDG----RRVVILMELEV 101
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNT---------NGSNGVHNNVAIPR-- 433
+K +G KIGNP P N A + NG++G + V+
Sbjct: 102 LKSAEVVGVKIGNPVPYNEGLGQPQVAPPAPAASPAASSRPQPQNGTSGAGSTVSKAYGA 161
Query: 434 -----QASAPVVQTH---------PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKL 479
+A+ P + + PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG KL
Sbjct: 162 SKTFGKAAGPSLSHNSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEEKL 221
Query: 480 FSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFT 539
FS++L+DESGEIRAT FN++ ++F +IE +KVYY S TLK ANK+F+++ NDYEM+F
Sbjct: 222 FSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFN 281
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQK 599
+ T+V+PC +D ++P+V++ F + + S D +D++G+C + + +T ++N +
Sbjct: 282 NETSVMPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNR 339
Query: 600 TYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL-------- 651
KR+I L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G L
Sbjct: 340 EVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTI 399
Query: 652 --------------------------------------------LMREIQDQQLGMGDKA 667
+ E++ + LG GDK
Sbjct: 400 IANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGGNTNWKTLYEVKSENLGQGDKP 459
Query: 668 DYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVM 727
DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC+ EF F YR+IL V
Sbjct: 460 DYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVN 519
Query: 728 IGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLE 782
I D+ + WVT FQ AE+ILG A +GE + + + A F +IFR+R K+E
Sbjct: 520 IADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVE 579
Query: 783 HYN 785
YN
Sbjct: 580 TYN 582
Score = 286 bits (731), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 142/328 (43%), Positives = 209/328 (63%), Gaps = 13/328 (3%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F + + S D +D++G+
Sbjct: 265 ANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGI 322
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T ++N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 323 CKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGAR 382
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVS---QRTGGMGGGAA 182
VS+F GG++LS+ SS + NPDIPE +KL+GWF + + VS ++GG+GGG
Sbjct: 383 VSDF-GGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQA-LDGVSISDLKSGGVGGGNT 440
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 441 -NWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 499
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH----- 297
CEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG A +GE + +
Sbjct: 500 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFE 559
Query: 298 PALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F +IFR+R K+E YN +I
Sbjct: 560 EVFQNANFRSFIFRVRVKVETYNDESRI 587
>sp|Q6NY74|RFA1_DANRE Replication protein A 70 kDa DNA-binding subunit OS=Danio rerio
GN=rpa1 PE=1 SV=1
Length = 601
Score = 360 bits (924), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 203/544 (37%), Positives = 305/544 (56%), Gaps = 80/544 (14%)
Query: 315 KLEHYNGTKK----IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGS 370
K++ NG + + DG++ S ML+TQLN + L+ + +KR + + + G
Sbjct: 31 KIDGGNGVSRFRVMMSDGLHTMSSFMLSTQLNPMAEQNQLATNCVCVLKRSVTNVLKDG- 89
Query: 371 ATNRSVLIILELNIIKPGTEIGFKIGNPQP-LNTNTDNSSTQQTPAATNTNGSNGVHNNV 429
R V++IL++ ++K ++ KIG+P P + + ST P A NG +
Sbjct: 90 ---RRVVVILDIEVLKSADQMPGKIGDPTPYVEGQSKAPSTAPAPTARPLQPQNGSDGST 146
Query: 430 AIP-------RQASAPVV-----QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSG 477
P + +AP + PI SL+PYQ+KWTI+ARVTNK+ IR W+N+RG G
Sbjct: 147 YRPSAQSFGKKPMAAPNTPGGSSKVVPIASLNPYQSKWTIRARVTNKSAIRTWSNSRGDG 206
Query: 478 KLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMS 537
KLFS++L+DESGEIRAT FN+E ++F +IE+ KV+YIS TLK ANK+FSS+ NDYEM+
Sbjct: 207 KLFSMELVDESGEIRATGFNNEVDKFFSLIEQGKVFYISKGTLKIANKQFSSLKNDYEMT 266
Query: 538 FTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTN 597
T++IPC ++ ++P ++ FV + + D +DV+GVC +A +++ + K N
Sbjct: 267 LNGETSIIPC--EDSNDVPMLQCDFVSIADLESREKDTILDVIGVCKNAEDVARIMTK-N 323
Query: 598 QKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL------ 651
+ KR+I L+D S + +T+WG +AETFD S +P++A+K AR+S+F G L
Sbjct: 324 SREVSKRNIQLIDMSGRVIQLTMWGSDAETFDGSGQPILAIKGARLSDFGGRSLSTLYSS 383
Query: 652 ---------------------------------------------LMREIQDQQLGMGDK 666
+ E++++ LG GDK
Sbjct: 384 TVMINPDIPEAYKLRGWYDKEGHALDGQSMTELRGPGGGGNTNWKTLAEVKNEHLGHGDK 443
Query: 667 ADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPV 726
ADY S I R N Y+ACPS+DCNKKV+DQ NGM+RCEKC+KEF F YRL+L
Sbjct: 444 ADYFSCIATIVYIRKENCLYQACPSKDCNKKVVDQQNGMFRCEKCDKEFPDFKYRLMLSA 503
Query: 727 MIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----LKKALFTQYIFRLRAKL 781
I D+ ++ WVT FQ+ AE++LG + +G+ + + A + A F ++FR R KL
Sbjct: 504 NIADFGDNQWVTCFQDTAETLLGQNSSYLGQLKDTNEAAFDEVFQHANFNTFVFRNRVKL 563
Query: 782 EHYN 785
E YN
Sbjct: 564 ETYN 567
Score = 275 bits (702), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 136/325 (41%), Positives = 204/325 (62%), Gaps = 9/325 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+FSS+ NDYEM+ T++IPC ++ ++P ++ FV + + D +DV+GV
Sbjct: 252 ANKQFSSLKNDYEMTLNGETSIIPC--EDSNDVPMLQCDFVSIADLESREKDTILDVIGV 309
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C +A +++ + K N + KR+I L+D S + +T+WG +AETFD S +P++A+K AR
Sbjct: 310 CKNAEDVARIMTK-NSREVSKRNIQLIDMSGRVIQLTMWGSDAETFDGSGQPILAIKGAR 368
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
+S+F GG++LS SS + +NPDIPE +KL+GW+ + + G GGG N
Sbjct: 369 LSDF-GGRSLSTLYSSTVMINPDIPEAYKLRGWYDKEGHALDGQSMTELRGPGGGGNTNW 427
Query: 186 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 245
+ E++++ LG GDKADY S I R N Y+ACPS+DCNKKV+DQ NGM+RCEK
Sbjct: 428 KTLAEVKNEHLGHGDKADYFSCIATIVYIRKENCLYQACPSKDCNKKVVDQQNGMFRCEK 487
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----L 300
C+KEF F YRL+L I D+ ++ WVT FQ+ AE++LG + +G+ + + A
Sbjct: 488 CDKEFPDFKYRLMLSANIADFGDNQWVTCFQDTAETLLGQNSSYLGQLKDTNEAAFDEVF 547
Query: 301 KKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F ++FR R KLE YN +I
Sbjct: 548 QHANFNTFVFRNRVKLETYNDESRI 572
>sp|Q92372|RFA1_SCHPO Replication factor A protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ssb1 PE=1 SV=1
Length = 609
Score = 312 bits (799), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 185/530 (34%), Positives = 288/530 (54%), Gaps = 93/530 (17%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGF- 393
+ML+TQLN ++ + L + VQ+ ++ V+ + R +LI+L LN++ TE+G
Sbjct: 60 SMLSTQLNHLVAENKLQKGAFVQLTQFTVNVMKE-----RKILIVLGLNVL---TELGVM 111
Query: 394 -KIGNPQPLNT---------NTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQT- 442
KIGNP L T +N+S +T +T+TN G NN A A P+++
Sbjct: 112 DKIGNPAGLETVDALRQQQNEQNNASAPRTGISTSTNSFYG--NNAAATAPAPPPMMKKP 169
Query: 443 ----------HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIR 492
+PI LSPYQNKWTI+ARVTNK+ ++ W+N RG GKLFS++LLDESGEIR
Sbjct: 170 AAPNSLSTIIYPIEGLSPYQNKWTIRARVTNKSEVKHWHNQRGEGKLFSVNLLDESGEIR 229
Query: 493 ATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEV 552
AT FND+ + F+D++++ VYYIS C + A K+++++ N+YE+ F T + ED+
Sbjct: 230 ATGFNDQVDAFYDILQEGSVYYISRCRVNIAKKQYTNVQNEYELMFERDTEIRKA-EDQT 288
Query: 553 GNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS 612
+P K+ FV L+ + +++ D IDV+GV + + +T + + + KRDIT+VDQ+
Sbjct: 289 A-VPVAKFSFVSLQEVGDVAKDAVIDVIGVLQNVGPVQQITSRATSRGFDKRDITIVDQT 347
Query: 613 QASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMR---------EIQD----- 658
+ +TLWGK A F S + ++A K +V++FQG L M +IQ+
Sbjct: 348 GYEMRVTLWGKTAIEFSVSEESILAFKGVKVNDFQGRSLSMLTSSTMSVDPDIQESHLLK 407
Query: 659 ---------------------------------------QQLGMGDKADYCSVRGIIQVF 679
+ LGM + DY S++G I
Sbjct: 408 GWYDGQGRGQEFAKHSVISSTLSTTGRSAERKNIAEVQAEHLGMSETPDYFSLKGTIVYI 467
Query: 680 RGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTL 739
R N +Y ACP+ DCNKKV DQ G +RCEKCNKE++ YR I+ + +GD T +W+ +
Sbjct: 468 RKKNVSYPACPAADCNKKVFDQ-GGSWRCEKCNKEYDAPQYRYIITIAVGDHTGQLWLNV 526
Query: 740 FQNEAESILGVTAQEVGESTEDHP-----ALKKALFTQYIFRLRAKLEHY 784
F + + I+ TA E+ + E+ + +A + YIF+ RAK +++
Sbjct: 527 FDDVGKLIMHKTADELNDLQENDENAFMNCMAEACYMPYIFQCRAKQDNF 576
Score = 219 bits (559), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 114/329 (34%), Positives = 189/329 (57%), Gaps = 15/329 (4%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+++++ N+YE+ F T + ED+ +P K+ FV L+ + +++ D IDV+GV
Sbjct: 260 AKKQYTNVQNEYELMFERDTEIRKA-EDQTA-VPVAKFSFVSLQEVGDVAKDAVIDVIGV 317
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ + +T + + + KRDIT+VDQ+ + +TLWGK A F S + ++A K +
Sbjct: 318 LQNVGPVQQITSRATSRGFDKRDITIVDQTGYEMRVTLWGKTAIEFSVSEESILAFKGVK 377
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTN----TRFEPVSQRTGGMGGGA 181
V++FQ G++LS+ SS +S++PDI E H L+GW+ Q + +S G A
Sbjct: 378 VNDFQ-GRSLSMLTSSTMSVDPDIQESHLLKGWYDGQGRGQEFAKHSVISSTLSTTGRSA 436
Query: 182 AGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMY 241
+ E+Q + LGM + DY S++G I R N +Y ACP+ DCNKKV DQ G +
Sbjct: 437 ERKNIA--EVQAEHLGMSETPDYFSLKGTIVYIRKKNVSYPACPAADCNKKVFDQ-GGSW 493
Query: 242 RCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP--- 298
RCEKCNKE++ YR I+ + +GD T +W+ +F + + I+ TA E+ + E+
Sbjct: 494 RCEKCNKEYDAPQYRYIITIAVGDHTGQLWLNVFDDVGKLIMHKTADELNDLQENDENAF 553
Query: 299 --ALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ +A + YIF+ RAK +++ G ++
Sbjct: 554 MNCMAEACYMPYIFQCRAKQDNFKGEMRV 582
>sp|Q5FW17|RFA1_XENTR Replication protein A 70 kDa DNA-binding subunit OS=Xenopus
tropicalis GN=rpa1 PE=2 SV=1
Length = 609
Score = 292 bits (747), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 188/538 (34%), Positives = 265/538 (49%), Gaps = 87/538 (16%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ + L+ I Q+ R+IV+ + G R V+I++E+ +
Sbjct: 46 MSDGLNTLSSFMLATQLNFLVDNNLLATNCICQVSRFIVNNLKDG----RRVIIVMEMEV 101
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNSSTQQT------------------PAATNTNGSN--G 424
+K + KIGNP P N P + N S G
Sbjct: 102 LKSADLVKGKIGNPHPYNDGQGPPQPAAPAPASAPPPSKPQNISAPPPPSMNRGASKLFG 161
Query: 425 VHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDL 484
+ V P + + VV PI SL+PYQ+KWT++ARVTNK IR W+N+RG GKLFSI++
Sbjct: 162 GGSVVNTPGGSQSKVV---PIASLNPYQSKWTVRARVTNKGQIRTWSNSRGEGKLFSIEM 218
Query: 485 LDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTV 544
+DESGEIRAT FN++ ++F +IE +KVYY S TLK ANK+++S+ NDYEM+F T+V
Sbjct: 219 VDESGEIRATAFNEQADKFFSLIEVNKVYYFSKGTLKIANKQYTSVKNDYEMTFNSETSV 278
Query: 545 ----------------IPCNEDEVGNMPSVKYCFVPLKTIAEIS-----------PDENI 577
+P E E N +V K E++ NI
Sbjct: 279 IPCDDSADVPMVQFEFVPIGELESKNKDTVLDIIGICKNAEEVTKVTIRSNNREVSKRNI 338
Query: 578 DVLG-------------------------VCIDAAELSSVTGKTNQKTYMKRDITLVDQS 612
+++ V I A LS G++ + D
Sbjct: 339 NLMDSSGKVVSTTLWGEDADKFDGSRQPVVAIKGARLSDFGGRSLSVLSSSTVMINPDIP 398
Query: 613 QASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSV 672
+A + E + + ++ + +LL E++ + LG G+KADY +
Sbjct: 399 EAFKLRAWFDSEGQVVEGTSISESRGGTGGGNTNWKSLL---EVKTENLGHGEKADYFTS 455
Query: 673 RGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWT 732
I R N Y+ACPSQDCNKKVIDQ NG++RCEKC+KEF + YRLIL I D+
Sbjct: 456 VATIVYLRKENCLYQACPSQDCNKKVIDQQNGLFRCEKCDKEFPNYKYRLILSANIADFG 515
Query: 733 NSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKALFTQYIFRLRAKLEHYN 785
+ W+T FQ AESILG A +GE E + + A F Y FR+R KLE YN
Sbjct: 516 ENQWITCFQESAESILGQNATYLGELKEKNEQAYDEVFQNANFRSYTFRIRVKLETYN 573
Score = 269 bits (687), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 142/325 (43%), Positives = 205/325 (63%), Gaps = 8/325 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+++S+ NDYEM+F T+VIPC D+ ++P V++ FVP+ + + D +D++G+
Sbjct: 257 ANKQYTSVKNDYEMTFNSETSVIPC--DDSADVPMVQFEFVPIGELESKNKDTVLDIIGI 314
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C +A E++ VT ++N + KR+I L+D S V+ TLWG++A+ FD S +PV+A+K AR
Sbjct: 315 CKNAEEVTKVTIRSNNREVSKRNINLMDSSGKVVSTTLWGEDADKFDGSRQPVVAIKGAR 374
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAGNL 185
+S+F GG++LS+ SS + +NPDIPE KL+ WF ++ + G GG N
Sbjct: 375 LSDF-GGRSLSVLSSSTVMINPDIPEAFKLRAWFDSEGQVVEGTSISESRGGTGGGNTNW 433
Query: 186 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 245
+ E++ + LG G+KADY + I R N Y+ACPSQDCNKKVIDQ NG++RCEK
Sbjct: 434 KSLLEVKTENLGHGEKADYFTSVATIVYLRKENCLYQACPSQDCNKKVIDQQNGLFRCEK 493
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PAL 300
C+KEF + YRLIL I D+ + W+T FQ AESILG A +GE E +
Sbjct: 494 CDKEFPNYKYRLILSANIADFGENQWITCFQESAESILGQNATYLGELKEKNEQAYDEVF 553
Query: 301 KKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F Y FR+R KLE YN +I
Sbjct: 554 QNANFRSYTFRIRVKLETYNDESRI 578
>sp|Q01588|RFA1_XENLA Replication protein A 70 kDa DNA-binding subunit OS=Xenopus laevis
GN=rpa1 PE=1 SV=1
Length = 609
Score = 270 bits (689), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 138/340 (40%), Positives = 209/340 (61%), Gaps = 22/340 (6%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ + L+ I Q+ R+IV+ + G R V+I++EL++
Sbjct: 46 MSDGLNTLSSFMLATQLNSLVDNNLLATNCICQVSRFIVNNLKDG----RRVIIVMELDV 101
Query: 385 IKPGTEIGFKIGNPQPLNTNTDNS----------------STQQTPAATNTNGSNGVHNN 428
+K + KIGNPQP N P + G++ +
Sbjct: 102 LKSADLVMGKIGNPQPYNDGQPQPAAPAPASAPAPAPSKLQNNSAPPPSMNRGTSKLFGG 161
Query: 429 VAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDES 488
++ + PI SL+PYQ+KWT++ARVTNK IR W+N+RG GKLFSI+++DES
Sbjct: 162 GSLLNTPGGSQSKVVPIASLNPYQSKWTVRARVTNKGQIRTWSNSRGEGKLFSIEMVDES 221
Query: 489 GEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
GEIRAT FN++ ++F +IE +KVYY S TLK ANK+++S+ NDYEM+F T+VIPC
Sbjct: 222 GEIRATAFNEQADKFFSIIEVNKVYYFSKGTLKIANKQYTSVKNDYEMTFNSETSVIPC- 280
Query: 549 EDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITL 608
D+ ++P V++ FV + + + D +D++GVC + E++ VT K+N + KR I L
Sbjct: 281 -DDSADVPMVQFEFVSIGELESKNKDTVLDIIGVCKNVEEVTKVTIKSNNREVSKRSIHL 339
Query: 609 VDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQG 648
+D S V+ TLWG++A+ FD S +PV+A+K AR+S+F G
Sbjct: 340 MDSSGKVVSTTLWGEDADKFDGSRQPVVAIKGARLSDFGG 379
Score = 268 bits (685), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 146/326 (44%), Positives = 205/326 (62%), Gaps = 9/326 (2%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+++S+ NDYEM+F T+VIPC D+ ++P V++ FV + + + D +D++GV
Sbjct: 256 ANKQYTSVKNDYEMTFNSETSVIPC--DDSADVPMVQFEFVSIGELESKNKDTVLDIIGV 313
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + E++ VT K+N + KR I L+D S V+ TLWG++A+ FD S +PV+A+K AR
Sbjct: 314 CKNVEEVTKVTIKSNNREVSKRSIHLMDSSGKVVSTTLWGEDADKFDGSRQPVVAIKGAR 373
Query: 126 VSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNT-RFEPVSQRTGGMGGGAAGN 184
+S+F GG++LS+ SS + +NPDIPE KL+ WF ++ +S+ GG GG N
Sbjct: 374 LSDF-GGRSLSVLSSSTVMINPDIPEAFKLRAWFDSEGQVVEGTSISESRGGGTGGGNTN 432
Query: 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+ E++++ LG G+KADY + I R N Y+ACPSQDCNKKVIDQ NG++RCE
Sbjct: 433 WKSLLEVKNENLGHGEKADYFTSVATIVYLRKENCLYQACPSQDCNKKVIDQQNGLFRCE 492
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PA 299
KCNKEF F YRLIL I D+ + W+T FQ AESILG A +GE E +
Sbjct: 493 KCNKEFPNFKYRLILSANIADFGENQWITCFQESAESILGQNATYLGELKEKNEQAYDEV 552
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F Y FR R KLE YN +I
Sbjct: 553 FQNANFRSYTFRARVKLETYNDESRI 578
Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 86/138 (62%), Gaps = 5/138 (3%)
Query: 653 MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCN 712
+ E++++ LG G+KADY + I R N Y+ACPSQDCNKKVIDQ NG++RCEKCN
Sbjct: 436 LLEVKNENLGHGEKADYFTSVATIVYLRKENCLYQACPSQDCNKKVIDQQNGLFRCEKCN 495
Query: 713 KEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKK 767
KEF F YRLIL I D+ + W+T FQ AESILG A +GE E + +
Sbjct: 496 KEFPNFKYRLILSANIADFGENQWITCFQESAESILGQNATYLGELKEKNEQAYDEVFQN 555
Query: 768 ALFTQYIFRLRAKLEHYN 785
A F Y FR R KLE YN
Sbjct: 556 ANFRSYTFRARVKLETYN 573
>sp|P22336|RFA1_YEAST Replication factor A protein 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFA1 PE=1 SV=1
Length = 621
Score = 234 bits (598), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 148/456 (32%), Positives = 232/456 (50%), Gaps = 87/456 (19%)
Query: 396 GNPQPLNTNTDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKW 455
G P L++N++ ++ ++ A N N Q + P+ I LSPYQN W
Sbjct: 153 GVPDMLHSNSNLNANERKFANENPNS------------QKTRPIF---AIEQLSPYQNVW 197
Query: 456 TIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYI 515
TIKARV+ K I+ W+N RG GKLF+++ LD SGEIRAT FND +F++++++ KVYY+
Sbjct: 198 TIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEIRATAFNDFATKFNEILQEGKVYYV 257
Query: 516 SNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDE 575
S L+PA +F+++ + YE++ T + C ++ N+P + F+ L I +
Sbjct: 258 SKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFDE--SNVPKTHFNFIKLDAIQNQEVNS 315
Query: 576 NIDVLGV--CIDAA-ELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN 632
N+DVLG+ I+ EL+S G K + +RDIT+VD S S+++ LW ++A F+
Sbjct: 316 NVDVLGIIQTINPHFELTSRAG----KKFDRRDITIVDDSGFSISVGLWNQQALDFNLPE 371
Query: 633 KPVIAVKAARVSEFQGNLLLMR---------EIQD---------------------QQLG 662
V A+K RV++F G L M EI + Q+ G
Sbjct: 372 GSVAAIKGVRVTDFGGKSLSMGFSSTLIPNPEIPEAYALKGWYDSKGRNANFITLKQEPG 431
Query: 663 MG----------------------------DKADYCSVRGIIQVFRGSNTTYKACPSQDC 694
MG +K D+ SV+ I + N Y AC +++C
Sbjct: 432 MGGQSAASLTKFIAQRITIARAQAENLGRSEKGDFFSVKAAISFLKVDNFAYPACSNENC 491
Query: 695 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 754
NKKV++Q +G +RCEKC+ +R IL + I D TN +W+TLF ++A+ +LGV A
Sbjct: 492 NKKVLEQPDGTWRCEKCDTNNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANT 551
Query: 755 VGESTEDHP-----ALKKALFTQYIFRLRAKLEHYN 785
+ E+ P + +Y FR+RA+ + YN
Sbjct: 552 LMSLKEEDPNEFTKITQSIQMNEYDFRIRAREDTYN 587
Score = 201 bits (511), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 185/334 (55%), Gaps = 18/334 (5%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA +F+++ + YE++ T + C ++ N+P + F+ L I + N+DVLG
Sbjct: 264 PAKPQFTNLTHPYELNLDRDTVIEECFDE--SNVPKTHFNFIKLDAIQNQEVNSNVDVLG 321
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+ +T + +K + +RDIT+VD S S+++ LW ++A F+ V A+K
Sbjct: 322 IIQTINPHFELTSRAGKK-FDRRDITIVDDSGFSISVGLWNQQALDFNLPEGSVAAIKGV 380
Query: 125 RVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTGGMGGGAAG 183
RV++F GGK+LS+ SS L NP+IPE + L+GW+ ++ N F + Q G MGG +A
Sbjct: 381 RVTDF-GGKSLSMGFSSTLIPNPEIPEAYALKGWYDSKGRNANFITLKQEPG-MGGQSAA 438
Query: 184 NL-------LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 236
+L + + Q + LG +K D+ SV+ I + N Y AC +++CNKKV++Q
Sbjct: 439 SLTKFIAQRITIARAQAENLGRSEKGDFFSVKAAISFLKVDNFAYPACSNENCNKKVLEQ 498
Query: 237 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 296
+G +RCEKC+ +R IL + I D TN +W+TLF ++A+ +LGV A + E+
Sbjct: 499 PDGTWRCEKCDTNNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEE 558
Query: 297 HP-----ALKKALFTQYIFRLRAKLEHYNGTKKI 325
P + +Y FR+RA+ + YN +I
Sbjct: 559 DPNEFTKITQSIQMNEYDFRIRAREDTYNDQSRI 592
>sp|O97472|RFA1_CAEBR Probable replication factor A 73 kDa subunit OS=Caenorhabditis
briggsae GN=rpa-1 PE=3 SV=1
Length = 658
Score = 172 bits (437), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 126/407 (30%), Positives = 196/407 (48%), Gaps = 76/407 (18%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNR 502
PI ++PY N + I V+ K I+ N + K+F+ ++ D +G+ IR T FN+
Sbjct: 225 PIAMVTPYVNNFRIHGMVSRKEDIK--NIPAKNMKIFNFEITDSNGDTIRCTAFNETAES 282
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
FH I ++ YY+S +++ ANKKF++ +DYE++ + + V + G + +
Sbjct: 283 FHSTITENLSYYLSGGSVRQANKKFNNTGHDYEITLRNDSVV-----EAGGELLAAPKLN 337
Query: 563 VPLKTIAEISPD--ENIDVLGVC----IDAAELSSVTGKTNQKTYMKRDITLVDQSQASV 616
+ ++AEI+ E IDVL + +A E +S G KT KR++ L+D+SQA V
Sbjct: 338 LKRVSLAEIAGHCGEMIDVLVIVEKMDAEATEFTSKAG----KTLTKREMELIDESQALV 393
Query: 617 TMTLWGKEA--ETFDASNKPVIAVKAARVSEFQGNLLL---------------------- 652
+TLWG EA D + VIA K EF G L
Sbjct: 394 RLTLWGDEAIKANVDDYHGKVIAFKGVIPREFNGGYSLGTGSGTRIIPVPEISGVSELYD 453
Query: 653 --------------------MRE-------IQDQQLGM-GDKADYCSVRGIIQVFRGSNT 684
M E +Q+ Q G DK DY SV+ +I ++
Sbjct: 454 WYTTEKPHSELKLISQTSGGMSEAPRTIAGLQEMQFGKDSDKGDYASVKAMITRINPNSA 513
Query: 685 TYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEA 744
YK C S+ C KKVI +++G YRCEKCNK N F + ++ + D T V+VT F + A
Sbjct: 514 LYKGCASEGCQKKVI-ESDGEYRCEKCNKSMNKFKWLYMMQFELSDETGQVYVTAFGDSA 572
Query: 745 ESILGVTAQEVGESTED-----HPALKKALFTQYIFRLRAKLEHYNK 786
++G TAQEVG+ ++ + ++ F ++RLR K+E YN+
Sbjct: 573 AKVVGKTAQEVGDLKDENLNEYNATFERLQFVPKMWRLRCKMETYNE 619
Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/330 (33%), Positives = 174/330 (52%), Gaps = 29/330 (8%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPD--ENIDVL 63
ANKKF++ +DYE++ + + V + G + + + ++AEI+ E IDVL
Sbjct: 303 ANKKFNNTGHDYEITLRNDSVV-----EAGGELLAAPKLNLKRVSLAEIAGHCGEMIDVL 357
Query: 64 GVC----IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA--ETFDASNKP 117
+ +A E +S GKT KR++ L+D+SQA V +TLWG EA D +
Sbjct: 358 VIVEKMDAEATEFTSKAGKT----LTKREMELIDESQALVRLTLWGDEAIKANVDDYHGK 413
Query: 118 VIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQT-NTRFEPVSQRTGG 176
VIA K EF GG +L + + P+I +L W++T+ ++ + +SQ +GG
Sbjct: 414 VIAFKGVIPREFNGGYSLGTGSGTRIIPVPEISGVSELYDWYTTEKPHSELKLISQTSGG 473
Query: 177 MGGGAAGNLLLMREIQDQQLGM-GDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVID 235
M + +Q+ Q G DK DY SV+ +I ++ YK C S+ C KKVI
Sbjct: 474 MSEAPR----TIAGLQEMQFGKDSDKGDYASVKAMITRINPNSALYKGCASEGCQKKVI- 528
Query: 236 QNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE 295
+++G YRCEKCNK N F + ++ + D T V+VT F + A ++G TAQEVG+ +
Sbjct: 529 ESDGEYRCEKCNKSMNKFKWLYMMQFELSDETGQVYVTAFGDSAAKVVGKTAQEVGDLKD 588
Query: 296 D-----HPALKKALFTQYIFRLRAKLEHYN 320
+ + ++ F ++RLR K+E YN
Sbjct: 589 ENLNEYNATFERLQFVPKMWRLRCKMETYN 618
>sp|Q23696|RFA1_CRIFA Replication factor A 51 kDa subunit OS=Crithidia fasciculata
GN=RPA1 PE=1 SV=1
Length = 467
Score = 162 bits (410), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 129/213 (60%), Gaps = 3/213 (1%)
Query: 441 QTHPIVSLSPY-QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE 499
Q PI SL+P+ KW I+ARV +K+ IR WN GKLFS L+DES IRAT+FND
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVADKSDIRTWNKPTSQGKLFSFTLIDESAAIRATVFNDA 67
Query: 500 CNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED-EVGNMPSV 558
+ F ++ +VYY S +K AN++FS++NNDYE++F ++ VI +D +P
Sbjct: 68 VDTFEPLVVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRASEVILARQDSSAAALPMQ 127
Query: 559 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM 618
+Y FVP++ + + +DVLGV + E+SS+T K+ + +KR++ + D S A+V +
Sbjct: 128 RYNFVPIELLKQREVGSLVDVLGVVLKVDEISSITQKSTGRELIKRNVKIGDMS-AAVEV 186
Query: 619 TLWGKEAETFDASNKPVIAVKAARVSEFQGNLL 651
T W EA+ ++ V+A++ +V F G L
Sbjct: 187 TFWNDEAKAWNYPVGTVVALRQLKVGSFDGVTL 219
Score = 153 bits (386), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 103/325 (31%), Positives = 170/325 (52%), Gaps = 18/325 (5%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDE-VGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
AN++FS++NNDYE++F ++ VI +D +P +Y FVP++ + + +DVLG
Sbjct: 91 ANRRFSNVNNDYELTFDRASEVILARQDSSAAALPMQRYNFVPIELLKQREVGSLVDVLG 150
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
V + E+SS+T K+ + +KR++ + D S A+V +T W EA+ ++ V+A++
Sbjct: 151 VVLKVDEISSITQKSTGRELIKRNVKIGDMS-AAVEVTFWNDEAKAWNYPVGTVVALRQL 209
Query: 125 RVSEFQGGKTLSLSMSSVLSLNP-DIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGGAAG 183
+V F G TLS + + + +NP D+P+ KL W+ + +S + G GGG G
Sbjct: 210 KVGSFD-GVTLSSTYQTKIDVNPADLPDVKKLATWYVSTGGANVVSLSSQGLGAGGGGGG 268
Query: 184 NLLLMR----EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ--N 237
R EIQ + +G G K +Y VR + F+ Y ACP+ CNKKV ++
Sbjct: 269 EGNRGRKYLDEIQSEGIGRGAKPEYVDVRCVPIYFKQDAQWYDACPT--CNKKVTEEGAQ 326
Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH 297
+RCEKC+ T R ++ + + D + VW+TLF G+ A E+ ++
Sbjct: 327 GDRFRCEKCDATV-VPTQRYLVSIQVTDNVSQVWLTLFNEAGVEFFGMEASELKRRAQED 385
Query: 298 P----ALKKALFTQ-YIFRLRAKLE 317
P L +A + + RLR K E
Sbjct: 386 PLYIAKLAQARMNRPVVMRLRVKEE 410
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 10/137 (7%)
Query: 653 MREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ--NNGMYRCEK 710
+ EIQ + +G G K +Y VR + F+ Y ACP+ CNKKV ++ +RCEK
Sbjct: 277 LDEIQSEGIGRGAKPEYVDVRCVPIYFKQDAQWYDACPT--CNKKVTEEGAQGDRFRCEK 334
Query: 711 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP----ALK 766
C+ T R ++ + + D + VW+TLF G+ A E+ ++ P L
Sbjct: 335 CDATV-VPTQRYLVSIQVTDNVSQVWLTLFNEAGVEFFGMEASELKRRAQEDPLYIAKLA 393
Query: 767 KALFTQ-YIFRLRAKLE 782
+A + + RLR K E
Sbjct: 394 QARMNRPVVMRLRVKEE 410
>sp|Q19537|RFA1_CAEEL Probable replication factor A 73 kDa subunit OS=Caenorhabditis
elegans GN=rpa-1 PE=1 SV=1
Length = 655
Score = 160 bits (404), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 127/423 (30%), Positives = 197/423 (46%), Gaps = 76/423 (17%)
Query: 430 AIP----RQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL 485
A+P R AS PI ++PY + + I V+ K IR + + K+F+ ++
Sbjct: 207 AVPPPARRTASNTERGVMPIAMVTPYVSNFKIHGMVSRKEEIRTF--PAKNTKVFNFEIT 264
Query: 486 DESGE-IRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTV 544
D +G+ IR T FN+ + I ++ YY+S ++K ANKKF++ +DYE++ S ++
Sbjct: 265 DSNGDTIRCTAFNEVAESLYTTITENLSYYLSGGSVKQANKKFNNTGHDYEITL-RSDSI 323
Query: 545 IPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVC----IDAAELSSVTGKTNQKT 600
I E+ P + V L IA + + IDVL V +A E +S GK+
Sbjct: 324 IEAG-GELLAAPKLILKRVKLGEIAGYA-GQLIDVLVVVEKMDPEATEFTSKAGKS---- 377
Query: 601 YMKRDITLVDQSQASVTMTLWGKEA--ETFDASNKPVIAVKAARVSEFQGNLLL------ 652
+KR++ L+D+S A V +TLWG EA D + VIA K EF G L
Sbjct: 378 LIKREMELIDESGALVRLTLWGDEATKALVDDYVQKVIAFKGVIPREFNGGFSLGTGSAT 437
Query: 653 -------------------------------------------MREIQDQQLGM-GDKAD 668
+ +Q+ Q G DK D
Sbjct: 438 RIISVPEIAGVSELYDWYANVKPTTEVKMMSQAAGGSNEAPRTIAGLQEMQFGKDSDKGD 497
Query: 669 YCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMI 728
Y +V+ +I +N Y+ C S+ C KK++ +N G YRCEKCNK N F + ++ +
Sbjct: 498 YATVKAMITRVNPTNALYRGCASEGCQKKLVGEN-GDYRCEKCNKNMNKFKWLYMMQFEL 556
Query: 729 GDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIF-----RLRAKLEH 783
D T V+VT F + A I+G +A E+GE ++ P A+F + F RLR K++
Sbjct: 557 SDETGQVYVTAFGDSAAKIVGKSAAELGELHDESPDEYNAIFERLQFVPKMWRLRCKMDS 616
Query: 784 YNK 786
YN+
Sbjct: 617 YNE 619
Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/328 (33%), Positives = 168/328 (51%), Gaps = 25/328 (7%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANKKF++ +DYE++ S ++I E+ P + V L IA + + IDVL V
Sbjct: 303 ANKKFNNTGHDYEITL-RSDSIIEAG-GELLAAPKLILKRVKLGEIAGYA-GQLIDVLVV 359
Query: 66 C----IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA--ETFDASNKPVI 119
+A E +S GK+ +KR++ L+D+S A V +TLWG EA D + VI
Sbjct: 360 VEKMDPEATEFTSKAGKS----LIKREMELIDESGALVRLTLWGDEATKALVDDYVQKVI 415
Query: 120 AVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFS-TQTNTRFEPVSQRTGGMG 178
A K EF GG +L ++ + P+I +L W++ + T + +SQ GG
Sbjct: 416 AFKGVIPREFNGGFSLGTGSATRIISVPEIAGVSELYDWYANVKPTTEVKMMSQAAGGSN 475
Query: 179 GGAAGNLLLMREIQDQQLGM-GDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQN 237
+ +Q+ Q G DK DY +V+ +I +N Y+ C S+ C KK++ +N
Sbjct: 476 EAPR----TIAGLQEMQFGKDSDKGDYATVKAMITRVNPTNALYRGCASEGCQKKLVGEN 531
Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH 297
G YRCEKCNK N F + ++ + D T V+VT F + A I+G +A E+GE ++
Sbjct: 532 -GDYRCEKCNKNMNKFKWLYMMQFELSDETGQVYVTAFGDSAAKIVGKSAAELGELHDES 590
Query: 298 PALKKALFTQYIF-----RLRAKLEHYN 320
P A+F + F RLR K++ YN
Sbjct: 591 PDEYNAIFERLQFVPKMWRLRCKMDSYN 618
>sp|Q58559|RPA_METJA Replication factor A OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rpa PE=1 SV=1
Length = 645
Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 26/155 (16%)
Query: 347 DGTLSEFTIVQIKRYIVSGVSSGSATNRSVLI--ILELNIIKPGTEIGFKIGNPQPLNTN 404
DG+L ++ + I + S T R L + EL++ K G I + + N
Sbjct: 97 DGSLGKYKRITI--------ADKSGTIRMTLWDDLAELDV-KVGDVIKIERARARKWRNN 147
Query: 405 TDNSSTQQTPAATNTNGSNGVHNNVAIPRQASAPVVQ-THPIVSLSPYQNKWTIKARVTN 463
+ SST +T N + P ++ T+ I LSP T + V +
Sbjct: 148 LELSSTSETKIKKLEN------------YEGELPEIKDTYNIGELSPGMTA-TFEGEVIS 194
Query: 464 KTPIREWNNARGS-GKLFSIDLLDESGEIRATMFN 497
PI+E+ A GS GKL S + DE+G IR T+++
Sbjct: 195 ALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWD 229
>sp|Q9D513|MEIOB_MOUSE Meiosis-specific with OB domain-containing protein OS=Mus musculus
GN=Meiob PE=2 SV=3
Length = 470
Score = 37.4 bits (85), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 99/233 (42%), Gaps = 13/233 (5%)
Query: 88 DITLVDQSQASVTMTLWGKEAETFDAS---NKPVIAVKAARVS--EFQGGKTLSLSMSSV 142
++ L D+++ S TMT W E+ S + VI R++ +FQ ++ ++
Sbjct: 195 EVKLFDETEPSFTMTCWDNESILLAQSWMARETVIFASDVRINFNKFQNCMAATVISKTI 254
Query: 143 LSLNPDIPECHKLQGWF--STQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGD 200
+++NPD PE + L + + +TN E S + ++ + +++ + L
Sbjct: 255 ITVNPDTPEANILLNYIRENKETNVADEIDSYLKESVNLNTIVDVYTVEQLKVKALKSEG 314
Query: 201 KAD--YCSVRGIIQVFRGSNTTYKACPSQ--DCNKKVIDQNNGMYRCEKCNKEFNTFTYR 256
KAD Y + I + T K ++ C V + +N C + + +F
Sbjct: 315 KADPFYGILYAYISTLNIDDETTKVVRNRCSSCGYIVNEASNTCTICNQDSSRLKSFFLS 374
Query: 257 LILPVMIGDWTNSVW-VTLFQNEAESILGVTAQE-VGESTEDHPALKKALFTQ 307
+ V + D T ++ +L + AE LG T E + ++E LK L +
Sbjct: 375 FDVLVDLTDHTGTLHSCSLSGSIAEETLGCTINEFLTMTSEQKTKLKWQLLLE 427
>sp|Q4R8G6|MEIOB_MACFA Meiosis-specific with OB domain-containing protein OS=Macaca
fascicularis GN=MEIOB PE=2 SV=1
Length = 471
Score = 37.0 bits (84), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 102/242 (42%), Gaps = 17/242 (7%)
Query: 88 DITLVDQSQASVTMTLWGKEAETFDASNKP---VIAVKAARVS--EFQGGKTLSLSMSSV 142
++ L D+++ S MT W E+ S P VI V R+S +F+ T ++ ++
Sbjct: 195 EVRLYDETEFSFAMTCWDNESILLAQSWMPRETVIFVSDVRISFDKFRNCMTATVISKTI 254
Query: 143 LSLNPDIPECHKLQGWFSTQTNTRF---EPVSQRTGGMGGGAAGNLLLMREIQDQQLGMG 199
++ NP+ PE + L + T E S + ++ + +++ + L
Sbjct: 255 ITTNPETPEANILLNFIRENKETNVLDDEIESYFKESINLSTIVDVYTVEQLKGKALKNE 314
Query: 200 DKAD--YCSVRGIIQVFRGSNTTYKACPSQ--DCNKKVIDQNNGMYRCEKCNKEFNTFTY 255
KAD Y + I + T K ++ C V + +N C K + +F +
Sbjct: 315 GKADPSYGILYAYISTLNIDDETTKVVRNRCSTCGYIVNEASNMCTICNKNSLDFKSVFL 374
Query: 256 RLILPVMIGDWTNSVW-VTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRA 314
+ + + D T ++ +L + AE LG T E T++ K AL Q++ R+
Sbjct: 375 SFDMLIDLTDHTGTLHSCSLTGSVAEETLGCTVNEFLAMTDEQ---KTALKWQFLLE-RS 430
Query: 315 KL 316
K+
Sbjct: 431 KI 432
>sp|B0BMX9|MEIOB_RAT Meiosis-specific with OB domain-containing protein OS=Rattus
norvegicus GN=Meiob PE=2 SV=1
Length = 470
Score = 37.0 bits (84), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 103/245 (42%), Gaps = 14/245 (5%)
Query: 88 DITLVDQSQASVTMTLWGKEAETFDAS---NKPVIAVKAARVS--EFQGGKTLSLSMSSV 142
++ L D+++ S TMT W E+ S + VI R++ +FQ ++ ++
Sbjct: 195 EVKLFDETEPSFTMTCWDNESILLAQSWMARETVIFASDVRINFNKFQNCMAATVISKTI 254
Query: 143 LSLNPDIPECHKLQGWF--STQTNTRFEPVSQRTGGMGGGAAGNLLLMREIQDQQLGMGD 200
+++NPD PE + L + + +T+ E S + N+ + +++ + L
Sbjct: 255 ITVNPDTPEANILLNFIRENKETSIADEIDSYLKESVNLNTIVNVYTVEQLKGKALENEG 314
Query: 201 KAD--YCSVRGIIQVFRGSNTTYKACPSQ--DCNKKVIDQNNGMYRCEKCNKEFNTFTYR 256
K D Y + I + T K ++ C V D +N C K + +F
Sbjct: 315 KVDPFYGILYAYISTLNIDDETTKVVRNRCSSCGYIVNDASNTCTICSKDSSRSRSFCLS 374
Query: 257 LILPVMIGDWTNSVW-VTLFQNEAESILGVTAQE-VGESTEDHPALK-KALFTQYIFRLR 313
+ V + D T ++ +L + AE LG T E + ++E LK + L + L+
Sbjct: 375 FDVLVDLTDHTGTLRSCSLSGSVAEETLGCTINEFLTMTSEQKTKLKWQLLLERSKIYLK 434
Query: 314 AKLEH 318
L H
Sbjct: 435 LILSH 439
>sp|Q8N635|MEIOB_HUMAN Meiosis-specific with OB domain-containing protein OS=Homo sapiens
GN=MEIOB PE=2 SV=3
Length = 442
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 88 DITLVDQSQASVTMTLWGKEAETFDASNKP---VIAVKAARVS--EFQGGKTLSLSMSSV 142
++ L D++++S MT W E+ S P VI R++ +F+ T ++ ++
Sbjct: 195 EVRLYDETESSFAMTCWDNESILLAQSWMPRETVIFASDVRINFDKFRNCMTATVISKTI 254
Query: 143 LSLNPDIPECHKLQGW 158
++ NPDIPE + L +
Sbjct: 255 ITTNPDIPEANILLNF 270
>sp|Q6P1J6|PLB1_HUMAN Phospholipase B1, membrane-associated OS=Homo sapiens GN=PLB1 PE=1
SV=3
Length = 1458
Score = 34.7 bits (78), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 485 LDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTV 544
L+E G+ T F+++C F D + + N L+P +K +S N FTHS
Sbjct: 1332 LNERGDTDLTFFSEDCFHFSDRGHAEMAIALWNNMLEPVGRKTTSNN------FTHSRAK 1385
Query: 545 IPCNEDE 551
+ C E
Sbjct: 1386 LKCPSPE 1392
>sp|Q15YQ7|Y451_PSEA6 Putative reductase Patl_0451 OS=Pseudoalteromonas atlantica (strain
T6c / ATCC BAA-1087) GN=Patl_0451 PE=3 SV=1
Length = 393
Score = 34.3 bits (77), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 67/151 (44%), Gaps = 22/151 (14%)
Query: 487 ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIP 546
E G++ +++ R D E +VY TLKP + +++ D + H ++ P
Sbjct: 128 EMGQVDLVIYSLASPRRTDP-ETGEVY---KSTLKPVGQAYTTKTYDTDKDRIHDISLEP 183
Query: 547 CNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDI 606
NEDE+ +TI ++ E+ ++ + A+L + KT TY+ +++
Sbjct: 184 ANEDEIA------------QTI-KVMGGEDWELWLDALAEADLLAYGCKTTAYTYIGKEL 230
Query: 607 TLVDQSQASVTMTLWGKEAETFDASNKPVIA 637
T QA++ GK E D + +++
Sbjct: 231 TWPIYGQATI-----GKAKEDLDRAAAAIVS 256
>sp|Q8TF39|ZN483_HUMAN Zinc finger protein 483 OS=Homo sapiens GN=ZNF483 PE=1 SV=3
Length = 744
Score = 33.5 bits (75), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 173 RTGGMGGGAAGNLLLMREIQDQQ-LGMGDKADYCSVRGIIQVFRGSNTTYKA-----CPS 226
R GG + + E Q +Q + +GD++ CS GII + R + + K C
Sbjct: 359 RKSNDGGKVLSHSSALTEHQKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTPMCEKCRK 418
Query: 227 QDCNKKVIDQNNG------MYRCEKCNKEF 250
C + ++++ G ++C KC K F
Sbjct: 419 DSCQEAALNKDEGNESGEKTHKCSKCGKAF 448
Score = 33.5 bits (75), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 633 KPVIAVKAARVSEFQGNLL-----LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYK 687
K A + +R S G +L L + Q++ +GD++ CS GII + R + + K
Sbjct: 350 KEKTAGEKSRKSNDGGKVLSHSSALTEHQKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRK 409
Query: 688 A-----CPSQDCNKKVIDQNNG------MYRCEKCNKEF 715
C C + ++++ G ++C KC K F
Sbjct: 410 TPMCEKCRKDSCQEAALNKDEGNESGEKTHKCSKCGKAF 448
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 285,914,065
Number of Sequences: 539616
Number of extensions: 12183768
Number of successful extensions: 46093
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 45727
Number of HSP's gapped (non-prelim): 281
length of query: 786
length of database: 191,569,459
effective HSP length: 126
effective length of query: 660
effective length of database: 123,577,843
effective search space: 81561376380
effective search space used: 81561376380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)