Query psy15132
Match_columns 786
No_of_seqs 427 out of 1388
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 21:25:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15132.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15132hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gop_C Putative uncharacterize 100.0 1.5E-74 5.3E-79 653.5 38.1 344 441-786 2-413 (444)
2 4gop_C Putative uncharacterize 100.0 1.3E-64 4.6E-69 572.2 32.3 340 2-350 80-436 (444)
3 1jmc_A Protein (replication pr 100.0 5.8E-44 2E-48 373.1 25.7 210 439-650 5-215 (246)
4 1l1o_C Replication protein A 7 100.0 1.3E-36 4.5E-41 300.3 15.3 163 182-350 4-171 (181)
5 1l1o_C Replication protein A 7 100.0 1.1E-34 3.8E-39 286.5 16.6 137 650-786 7-148 (181)
6 3u50_C Telomerase-associated p 100.0 1E-34 3.6E-39 279.7 11.9 148 185-344 8-171 (172)
7 3u50_C Telomerase-associated p 100.0 1.8E-33 6.2E-38 271.1 10.2 130 651-786 9-154 (172)
8 1jmc_A Protein (replication pr 100.0 1.1E-30 3.8E-35 272.5 17.7 160 2-164 85-244 (246)
9 1ynx_A Replication factor-A pr 100.0 4.2E-29 1.4E-33 228.0 13.1 112 440-551 2-113 (114)
10 2b29_A Replication protein A 7 99.6 1.1E-15 3.9E-20 139.7 7.6 79 319-402 43-122 (123)
11 3dm3_A Replication factor A; p 99.5 6.1E-14 2.1E-18 125.1 10.2 99 440-549 3-102 (105)
12 1o7i_A SSB, SSO2364, single st 99.5 5.8E-13 2E-17 122.1 13.4 109 442-571 2-110 (119)
13 3e0e_A Replication protein A; 99.5 2.3E-13 8E-18 119.9 10.0 93 443-547 3-96 (97)
14 2k50_A Replication factor A re 99.4 1.5E-12 5.2E-17 118.7 10.8 105 42-151 4-110 (115)
15 1o7i_A SSB, SSO2364, single st 99.4 2.5E-12 8.6E-17 117.9 11.8 104 45-155 2-107 (119)
16 3dm3_A Replication factor A; p 99.3 1.2E-11 4.1E-16 110.2 12.6 94 44-144 4-98 (105)
17 2k50_A Replication factor A re 99.2 6E-11 2E-15 108.1 12.2 104 440-551 5-109 (115)
18 2k75_A Uncharacterized protein 99.2 5.4E-11 1.8E-15 106.4 10.4 95 441-551 2-97 (106)
19 3e0e_A Replication protein A; 99.1 7.5E-10 2.6E-14 97.4 12.7 91 47-144 4-94 (97)
20 1wjj_A Hypothetical protein F2 99.0 7.5E-10 2.6E-14 103.6 11.0 99 440-549 14-122 (145)
21 2k75_A Uncharacterized protein 98.9 1.6E-08 5.5E-13 90.3 12.2 92 43-145 1-92 (106)
22 2kbn_A Conserved protein; nucl 98.8 3.2E-08 1.1E-12 88.8 11.4 94 441-550 4-97 (109)
23 1wjj_A Hypothetical protein F2 98.4 5.1E-07 1.7E-11 84.4 9.1 100 43-147 14-121 (145)
24 2kbn_A Conserved protein; nucl 98.4 1.7E-06 5.8E-11 77.5 12.1 90 45-147 5-95 (109)
25 1xjv_A Protection of telomeres 98.2 3.2E-05 1.1E-09 81.9 16.8 94 42-143 3-98 (294)
26 1qzg_A Protection of telomeres 98.1 2.6E-05 8.9E-10 75.6 12.3 95 43-140 27-128 (187)
27 1ynx_A Replication factor-A pr 98.1 2.1E-05 7.2E-10 71.0 10.9 99 45-148 4-111 (114)
28 1xjv_A Protection of telomeres 98.1 5.6E-05 1.9E-09 80.0 15.9 191 441-645 5-243 (294)
29 1qzg_A Protection of telomeres 97.8 7.4E-05 2.5E-09 72.4 9.7 86 560-649 27-120 (187)
30 1jb7_A Telomere-binding protei 97.4 0.0061 2.1E-07 68.5 19.6 287 439-757 35-453 (495)
31 1miu_A BRCA2, breast cancer ty 97.2 0.0021 7.2E-08 74.2 13.6 153 478-646 511-671 (738)
32 3u58_A Tetrahymena TEB1 AB; te 97.1 0.04 1.4E-06 49.4 17.9 159 442-628 11-174 (213)
33 3u4v_A Telomerase-associated p 97.0 0.0066 2.3E-07 49.6 10.7 87 442-539 15-104 (117)
34 1jb7_A Telomere-binding protei 97.0 0.0031 1.1E-07 70.9 11.5 104 40-149 33-153 (495)
35 1se8_A Single-strand binding p 94.0 1.1 3.8E-05 46.9 15.9 180 452-647 5-211 (301)
36 4hik_A Protection of telomeres 93.8 0.68 2.3E-05 42.8 12.1 99 48-157 5-135 (143)
37 4gop_B Putative uncharacterize 93.8 0.23 7.7E-06 45.8 9.0 62 575-649 37-103 (136)
38 4gop_B Putative uncharacterize 93.7 0.32 1.1E-05 44.8 9.9 68 58-138 37-109 (136)
39 3kdf_D Replication protein A 3 93.5 0.64 2.2E-05 42.4 11.4 80 58-152 32-115 (132)
40 2fxq_A Single-strand binding p 93.1 2 6.8E-05 44.1 15.7 179 452-646 5-206 (264)
41 3kdf_D Replication protein A 3 92.5 0.36 1.2E-05 44.2 8.2 63 575-649 32-98 (132)
42 3u4z_A Telomerase-associated p 92.3 2.9 0.0001 33.7 11.9 85 450-550 10-96 (109)
43 3kf6_A Protein STN1; OB fold, 92.2 1.2 3.9E-05 42.1 11.4 86 58-160 48-138 (159)
44 3ebe_A Protein MCM10 homolog; 90.6 0.7 2.4E-05 45.3 8.3 98 439-545 35-143 (200)
45 2pi2_A Replication protein A 3 90.1 1.1 3.7E-05 46.3 9.8 69 58-138 72-144 (270)
46 2pi2_A Replication protein A 3 89.5 0.81 2.8E-05 47.2 8.3 63 575-649 72-138 (270)
47 3mxn_A RECQ-mediated genome in 89.0 0.52 1.8E-05 43.9 5.6 41 257-297 60-100 (157)
48 1miu_A BRCA2, breast cancer ty 88.2 2.8 9.7E-05 48.6 12.2 128 6-148 556-692 (738)
49 3mxn_A RECQ-mediated genome in 88.0 0.47 1.6E-05 44.2 4.6 64 666-761 36-99 (157)
50 3rn5_A Interferon-inducible pr 88.0 19 0.00066 34.5 18.2 164 456-646 14-181 (208)
51 3eiv_A Single-stranded DNA-bin 86.7 3 0.0001 40.8 9.7 63 452-517 4-81 (199)
52 3kf6_A Protein STN1; OB fold, 86.5 2.3 7.8E-05 40.1 8.6 63 575-649 48-115 (159)
53 3vdy_A SSB, single-stranded DN 86.5 3.4 0.00012 36.6 9.4 65 451-518 4-79 (116)
54 1txy_A Primosomal replication 85.8 1.6 5.5E-05 38.0 6.7 64 452-518 2-77 (104)
55 3koj_A Uncharacterized protein 85.5 5.1 0.00017 35.1 9.7 65 451-517 10-81 (108)
56 2vw9_A Single-stranded DNA bin 85.1 4 0.00014 37.2 9.3 64 452-518 2-78 (134)
57 3fhw_A Primosomal replication 84.8 5.7 0.0002 35.2 9.8 65 452-520 1-77 (115)
58 1z9f_A Single-strand binding p 84.2 4 0.00014 38.1 9.0 66 449-517 13-91 (153)
59 3tqy_A Single-stranded DNA-bin 84.1 3.3 0.00011 39.0 8.4 65 451-518 7-85 (158)
60 3u58_A Tetrahymena TEB1 AB; te 83.0 9.9 0.00034 34.0 10.4 84 449-548 127-212 (213)
61 3i7f_A Aspartyl-tRNA synthetas 83.0 6.7 0.00023 44.4 11.8 99 440-547 48-153 (548)
62 3afp_A Single-stranded DNA-bin 82.1 7.4 0.00025 36.9 10.1 63 452-517 4-81 (168)
63 3k8a_A Putative primosomal rep 81.3 8.1 0.00028 33.4 9.2 62 453-519 8-81 (103)
64 1eov_A ASPRS, aspartyl-tRNA sy 80.6 6.9 0.00024 43.8 10.8 98 441-547 22-130 (487)
65 3ulp_A Single-strand binding p 80.3 7.5 0.00026 34.8 9.1 64 452-518 6-84 (124)
66 3ebe_A Protein MCM10 homolog; 79.8 3 0.0001 40.8 6.6 80 43-127 36-123 (200)
67 4dni_A Fusion protein of RNA-e 78.7 59 0.002 32.9 17.8 167 452-646 30-228 (257)
68 3en2_A Probable primosomal rep 77.5 9.6 0.00033 32.9 8.3 64 452-519 2-77 (101)
69 1v1q_A Primosomal replication 76.1 5.6 0.00019 36.2 6.8 63 453-518 20-94 (134)
70 4hik_A Protection of telomeres 75.9 7.6 0.00026 35.8 7.7 47 490-542 66-112 (143)
71 1qvc_A Single stranded DNA bin 75.1 5.8 0.0002 36.6 6.9 64 452-518 5-82 (145)
72 4dam_A Single-stranded DNA-bin 74.4 5.3 0.00018 36.1 6.2 62 452-517 15-91 (128)
73 1eqq_A Single stranded DNA bin 74.2 3.4 0.00012 39.6 5.1 64 452-518 6-83 (178)
74 3m4p_A Ehasnrs, asparaginyl-tR 73.6 12 0.00042 41.3 10.2 98 441-547 18-122 (456)
75 1ffk_W Ribosomal protein L37AE 73.2 1.4 4.9E-05 35.6 1.8 31 223-255 29-60 (73)
76 3lgj_A Single-stranded DNA-bin 73.1 12 0.00041 35.5 8.6 64 452-518 23-101 (169)
77 3pgz_A Single-stranded DNA-bin 72.7 9.5 0.00033 37.0 7.8 63 452-517 26-103 (193)
78 3ull_A DNA binding protein; DN 72.2 12 0.0004 33.9 8.0 65 451-518 13-97 (132)
79 3jyw_9 60S ribosomal protein L 72.1 1.7 5.8E-05 35.0 2.0 28 223-252 28-56 (72)
80 1se8_A Single-strand binding p 71.5 11 0.00039 39.2 8.8 63 452-518 129-204 (301)
81 3cc2_Z 50S ribosomal protein L 71.4 1.4 4.8E-05 38.7 1.5 27 223-251 62-89 (116)
82 1vq8_Z 50S ribosomal protein L 70.2 1.6 5.5E-05 36.3 1.5 26 223-250 29-55 (83)
83 3rlo_A Gamma-interferon-induci 69.3 82 0.0028 30.1 19.8 161 456-644 11-175 (204)
84 3j21_i 50S ribosomal protein L 69.2 1.8 6E-05 35.9 1.5 27 223-251 37-64 (83)
85 1x54_A Asparaginyl-tRNA synthe 68.1 24 0.00082 38.7 10.9 91 443-547 5-101 (434)
86 1wyd_A Hypothetical aspartyl-t 65.8 21 0.00071 39.2 9.8 89 444-547 6-98 (429)
87 3nem_A Aspartyl-tRNA synthetas 65.4 30 0.001 38.0 11.0 92 443-548 5-102 (438)
88 1c0a_A Aspartyl tRNA synthetas 64.6 31 0.0011 39.4 11.3 96 444-548 5-106 (585)
89 3bju_A Lysyl-tRNA synthetase; 64.2 22 0.00076 39.9 9.9 79 453-547 56-141 (521)
90 3iz5_m 60S ribosomal protein L 64.0 2.6 8.7E-05 35.6 1.5 28 223-252 38-66 (92)
91 1vq8_Z 50S ribosomal protein L 62.4 2.8 9.6E-05 34.8 1.5 26 688-715 29-55 (83)
92 3k81_C MP18 RNA editing comple 62.0 36 0.0012 32.0 9.2 70 449-523 19-104 (164)
93 3jyw_9 60S ribosomal protein L 61.5 4.1 0.00014 32.8 2.2 28 688-717 28-56 (72)
94 3izc_m 60S ribosomal protein R 61.0 3 0.0001 35.2 1.4 28 223-252 38-66 (92)
95 4gs3_A Single-stranded DNA-bin 60.4 52 0.0018 28.6 9.3 64 57-123 11-76 (107)
96 4ex5_A Lysine--tRNA ligase; st 60.2 31 0.0011 38.7 10.0 79 453-547 87-169 (529)
97 4a17_Y RPL37A, 60S ribosomal p 59.7 2.9 9.8E-05 35.9 1.1 30 223-254 38-68 (103)
98 1l0w_A Aspartyl-tRNA synthetas 59.7 36 0.0012 38.8 10.6 96 444-548 6-104 (580)
99 1n9w_A Aspartyl-tRNA synthetas 59.3 32 0.0011 37.5 9.8 83 444-547 4-88 (422)
100 3f2b_A DNA-directed DNA polyme 59.2 19 0.00064 43.9 8.4 73 441-517 6-80 (1041)
101 4gs3_A Single-stranded DNA-bin 58.8 58 0.002 28.2 9.4 66 576-645 13-80 (107)
102 2xgt_A Asparaginyl-tRNA synthe 58.8 30 0.001 38.0 9.5 93 444-546 2-96 (435)
103 3k7u_C MP18 RNA editing comple 58.4 52 0.0018 30.3 9.6 67 451-522 5-87 (148)
104 2xvs_A Tetratricopeptide repea 57.8 23 0.0008 33.3 7.0 73 440-522 61-135 (166)
105 3j21_g 50S ribosomal protein L 56.6 5.4 0.00018 29.8 2.0 25 222-251 15-39 (51)
106 3j21_i 50S ribosomal protein L 55.9 4.5 0.00015 33.5 1.6 26 688-715 37-63 (83)
107 3cc2_Z 50S ribosomal protein L 55.7 4.2 0.00014 35.7 1.5 26 688-715 62-88 (116)
108 1pft_A TFIIB, PFTFIIBN; N-term 52.6 9.9 0.00034 28.0 3.0 29 687-717 6-36 (50)
109 1ffk_W Ribosomal protein L37AE 51.8 5.4 0.00018 32.2 1.4 32 687-720 28-60 (73)
110 3en2_A Probable primosomal rep 51.2 47 0.0016 28.5 7.4 68 577-649 5-85 (101)
111 3a74_A Lysyl-tRNA synthetase; 50.4 55 0.0019 36.4 10.0 79 453-547 57-139 (493)
112 1e1o_A Lysyl-tRNA synthetase, 50.4 40 0.0014 37.7 8.8 79 453-547 65-148 (504)
113 2fxq_A Single-strand binding p 50.4 47 0.0016 33.6 8.8 63 452-518 128-200 (264)
114 3iz5_m 60S ribosomal protein L 49.8 6.1 0.00021 33.3 1.5 27 688-716 38-65 (92)
115 3j21_g 50S ribosomal protein L 49.3 6.8 0.00023 29.3 1.5 25 686-715 14-38 (51)
116 3izc_m 60S ribosomal protein R 49.1 6.3 0.00022 33.2 1.5 27 688-716 38-65 (92)
117 2pk7_A Uncharacterized protein 47.9 7.5 0.00026 31.1 1.7 29 686-716 8-37 (69)
118 4a17_Y RPL37A, 60S ribosomal p 47.6 5.8 0.0002 34.0 1.1 27 688-716 38-65 (103)
119 1pft_A TFIIB, PFTFIIBN; N-term 47.3 15 0.00053 26.9 3.3 27 223-251 7-35 (50)
120 2jr6_A UPF0434 protein NMA0874 47.1 7.7 0.00026 30.9 1.6 29 686-716 8-37 (68)
121 2js4_A UPF0434 protein BB2007; 47.0 7.5 0.00026 31.1 1.6 29 686-716 8-37 (70)
122 2hf1_A Tetraacyldisaccharide-1 46.8 7.7 0.00026 30.9 1.6 29 686-716 8-37 (68)
123 1gm5_A RECG; helicase, replica 46.4 13 0.00043 44.2 4.2 69 441-517 155-225 (780)
124 3koj_A Uncharacterized protein 45.9 48 0.0016 28.8 6.8 69 58-130 12-89 (108)
125 2js4_A UPF0434 protein BB2007; 42.4 11 0.00037 30.2 1.8 28 221-250 8-36 (70)
126 3fhw_A Primosomal replication 41.5 67 0.0023 28.2 7.0 59 577-640 4-74 (115)
127 2jr6_A UPF0434 protein NMA0874 41.4 11 0.00037 30.0 1.7 28 221-250 8-36 (68)
128 2hf1_A Tetraacyldisaccharide-1 41.4 11 0.00037 30.0 1.7 28 221-250 8-36 (68)
129 3au7_A TIAS, putative uncharac 40.3 47 0.0016 35.9 7.0 68 443-518 276-345 (402)
130 2pk7_A Uncharacterized protein 40.1 11 0.00037 30.1 1.5 27 222-250 9-36 (69)
131 2jny_A Uncharacterized BCR; st 39.5 12 0.0004 29.7 1.6 29 686-716 10-39 (67)
132 3k8a_A Putative primosomal rep 37.8 1.2E+02 0.0042 25.9 8.0 70 576-649 9-89 (103)
133 3j20_Y 30S ribosomal protein S 37.2 18 0.0006 26.9 2.2 27 221-249 19-46 (50)
134 2oq0_A Gamma-interferon-induci 36.2 3E+02 0.01 26.4 18.4 163 456-645 17-184 (206)
135 2jny_A Uncharacterized BCR; st 35.8 15 0.00051 29.1 1.7 28 221-250 10-38 (67)
136 2hpi_A DNA polymerase III alph 35.5 20 0.0007 44.3 3.6 63 454-521 1044-1106(1220)
137 1txy_A Primosomal replication 35.3 1.3E+02 0.0044 25.6 7.9 60 577-640 5-76 (104)
138 1v1q_A Primosomal replication 34.6 1.3E+02 0.0045 27.1 8.1 62 576-640 21-93 (134)
139 2akl_A PHNA-like protein PA012 34.3 17 0.00058 32.5 2.0 28 686-715 27-54 (138)
140 2akl_A PHNA-like protein PA012 33.3 16 0.00054 32.7 1.5 27 221-249 27-53 (138)
141 3vdy_A SSB, single-stranded DN 29.4 1.2E+02 0.0042 26.2 6.9 68 576-646 7-85 (116)
142 2jne_A Hypothetical protein YF 29.3 23 0.00079 30.0 1.8 25 222-249 33-57 (101)
143 1dl6_A Transcription factor II 28.8 29 0.001 26.5 2.2 28 687-716 12-41 (58)
144 2kpi_A Uncharacterized protein 28.5 25 0.00086 26.7 1.8 28 686-716 10-39 (56)
145 2hpi_A DNA polymerase III alph 28.3 45 0.0015 41.3 5.0 74 562-643 1026-1105(1220)
146 1dl6_A Transcription factor II 28.1 27 0.00091 26.7 1.9 27 223-251 13-41 (58)
147 2jrp_A Putative cytoplasmic pr 26.8 29 0.00098 28.5 1.9 20 228-248 7-26 (81)
148 2vv6_A FIXL, sensor protein FI 26.6 50 0.0017 27.5 3.7 31 261-293 6-36 (119)
149 2vw9_A Single-stranded DNA bin 25.4 1.3E+02 0.0045 26.9 6.5 33 98-130 50-85 (134)
150 2con_A RUH-035 protein, NIN on 25.3 22 0.00075 29.1 1.0 45 683-737 12-56 (79)
151 3u6p_A Formamidopyrimidine-DNA 25.3 27 0.00092 35.7 1.9 25 222-248 246-273 (273)
152 3tqy_A Single-stranded DNA-bin 25.2 1.1E+02 0.0036 28.4 5.9 68 576-646 10-91 (158)
153 1ee8_A MUTM (FPG) protein; bet 25.2 32 0.0011 35.1 2.5 25 222-248 236-263 (266)
154 2vv6_A FIXL, sensor protein FI 24.5 67 0.0023 26.7 4.2 29 726-756 6-34 (119)
155 2cr8_A MDM4 protein; ZF-ranbp 24.3 19 0.00064 26.6 0.3 8 240-247 11-18 (53)
156 1k82_A Formamidopyrimidine-DNA 23.6 30 0.001 35.3 1.9 28 219-248 234-268 (268)
157 2e72_A POGO transposable eleme 23.6 31 0.0011 25.2 1.4 14 702-715 9-22 (49)
158 2xzf_A Formamidopyrimidine-DNA 23.6 31 0.001 35.3 2.0 28 219-248 236-270 (271)
159 1k3x_A Endonuclease VIII; hydr 23.3 31 0.0011 35.0 1.9 24 223-248 236-262 (262)
160 2kpi_A Uncharacterized protein 23.0 36 0.0012 25.8 1.8 27 221-250 10-38 (56)
161 2jne_A Hypothetical protein YF 22.4 34 0.0012 29.0 1.6 26 686-714 32-57 (101)
162 3eiv_A Single-stranded DNA-bin 22.0 1.9E+02 0.0064 27.9 7.1 68 576-646 6-88 (199)
163 4dni_A Fusion protein of RNA-e 21.9 2.3E+02 0.0079 28.5 8.0 64 453-522 147-227 (257)
164 2jrp_A Putative cytoplasmic pr 21.4 37 0.0013 27.9 1.6 6 708-713 34-39 (81)
165 1ll8_A PAS kinase; PAS domain, 21.4 55 0.0019 27.0 2.9 30 262-293 12-42 (114)
166 1d06_A Nitrogen fixation regul 21.3 71 0.0024 27.1 3.7 30 262-293 30-59 (130)
167 2k4x_A 30S ribosomal protein S 21.1 47 0.0016 25.1 2.0 26 222-249 19-45 (55)
No 1
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=100.00 E-value=1.5e-74 Score=653.51 Aligned_cols=344 Identities=42% Similarity=0.779 Sum_probs=325.1
Q ss_pred ceeeecccCCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEE
Q psy15132 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTL 520 (786)
Q Consensus 441 ~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V 520 (786)
+++||++|+|++++|+|+|||++||++|.|++++++|++|+|+|+|++|+|+||+|++++++|++.|++|+||+|++|.|
T Consensus 2 ~~~~I~~L~p~~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G~I~at~~~~~~~~f~~~l~eG~vy~Is~~~V 81 (444)
T 4gop_C 2 PIYPIEGLSPYQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSGEIKATGFNDAVDRFYPLLQENHVYLISKARV 81 (444)
T ss_dssp -CCCSTTCCTTCCSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSCEEEEEEETHHHHHHTTTCCTTCEEEEESCEE
T ss_pred CceeHHHCCCCCcceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCCEEEEEEeHHHHHHHHHheecCCEEEEcCCEE
Confidence 58999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred eccCCcccccCCceEEEEccccEEEEccCCCCCCCCcceeeccCcccccccCCCceeeEEEEEEEcccceeEEeecCCce
Q psy15132 521 KPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKT 600 (786)
Q Consensus 521 ~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g~~ 600 (786)
++++++|++++|+|||+|+.+|.|+++++.. .+|.+.|+|++|++|.+...+..|||||+|++|+++.++++|++|++
T Consensus 82 ~~~~~~y~~~~~~~ei~~~~~T~V~~~~d~~--~iP~~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~i~~k~~g~~ 159 (444)
T 4gop_C 82 NIAKKQFSNLQNEYEITFENSTEIEECTDAT--DVPEVKYEFVRINELESVEANQQCDVIGILDSYGELSEIVSKASQRP 159 (444)
T ss_dssp EECCGGGCSCCCSEEEEECTTCEEEECSCCS--SSCCCCCCBCCGGGGGGSCSSCCCBEEEEEEEECCCEEECCTTTCSC
T ss_pred EecCCccccCCCCEEEEEcCCcEEEEccCcc--cCcceeecccCHHHHhccCCCCceEEEEEEEEcCCcEEEEEccCCce
Confidence 9999999999999999999999999998865 79999999999999999888899999999999999999998877999
Q ss_pred eeEEEEEEeeccccEEEEEEecccccccc----CCCCCEEEEEeEEEeecCCc-c-------------------------
Q psy15132 601 YMKRDITLVDQSQASVTMTLWGKEAETFD----ASNKPVIAVKAARVSEFQGN-L------------------------- 650 (786)
Q Consensus 601 ~~kr~i~l~D~s~~~i~~tLWg~~a~~~~----~~~~~vv~i~~~~V~~f~G~-L------------------------- 650 (786)
..+|+++|+|+||.+|+|||||++|+.|+ ...++||+|+++||++|+|+ |
T Consensus 160 ~~kr~i~L~D~sg~~i~~tLWg~~A~~f~~~~~~~~~~VV~i~~~kV~~f~G~~ls~~~~s~i~inPdipea~~l~~w~~ 239 (444)
T 4gop_C 160 VQKRELTLVDQGNRSVKLTLWGKTAETFPTNAGVDEKPVLAFKGVKVGDFGGRSLSMFSSSTMLINPDITESHVLRGWYD 239 (444)
T ss_dssp EEEEEEEEECTTCBEEEEEEEHHHHHTSTTSTTSSSCCEEEEESCEEECTTSSEEECCTTCEEEESCSSHHHHHHHHHHH
T ss_pred eeEEEEEEEeCCCCEEEEEEEhhhhhhhhhhhccCCCCEEEEEeEEEeecCCeEEeccccceEEECCCCHHHHHHHHHHH
Confidence 99999999999999999999999999998 78899999999999999987 4
Q ss_pred ---------------------------------ccHHhHHhhcCCCCCCCceEEEEEEEEEEecCceEEeCCCCcccccc
Q psy15132 651 ---------------------------------LLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKK 697 (786)
Q Consensus 651 ---------------------------------~ti~e~~~~~l~~~~~~~~~~v~a~I~~i~~~~~~Y~aC~~~~C~kk 697 (786)
+||+|++++++|.+++++||.|+|+|+.|+.++|||+|||.++|+||
T Consensus 240 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kti~~i~~~~~g~~~~~~~~~v~atI~~i~~~~~~Y~aC~~~~C~kk 319 (444)
T 4gop_C 240 NDGAHAQFQPYTNGGVGGGAMGGGGAGANMAERRTIVQVKDENLGMSEKPDYFNVRATVVYIKQENLYYTACASEGCNKK 319 (444)
T ss_dssp HHTTTSCCBCCCCCC---------CTTCCSSEECCHHHHHHTTTTSSSSCEEEEEEEEEEEECCTTCEEEECCSTTCCCB
T ss_pred cCCCCcccccccccccccccccccccccccccceeHHHHhhhccCCCCCCcEEEEEEEEEEEcCCceEEccCCcccCCCc
Confidence 23556666677777889999999999999999999999997779999
Q ss_pred ccccCCceeeeCCCCCcCCceeEEEEEEEEEEecCCcEEEEEehhhHHHHhCCChHHHhccccChH-----HHHHhcCCe
Q psy15132 698 VIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----ALKKALFTQ 772 (786)
Q Consensus 698 v~~~~~g~~~C~~C~~~~~~~~~ry~l~~~i~D~Tg~~~~~~F~~~ae~llG~sa~el~~~~~~~~-----~~~~~~~k~ 772 (786)
|.+.++|.|+|++|++..++|.|||+|++.|+|+||++|+++|++.|++|||+||+||.+++++++ +++++.|++
T Consensus 320 v~~~~~g~~~C~~C~~~~~~~~~ry~l~~~v~D~Tg~~~~~~F~~~a~~llG~sa~el~~~~~~d~~~~~~~~~~~~~k~ 399 (444)
T 4gop_C 320 VNLDHENNWRCEKCDRSYATPEYRYILSTNVADATGQMWLSGFNEDATQLIGMSAGELHKLREESESEFSAALHRAANRM 399 (444)
T ss_dssp EEECTTSCEEETTTTEEESSCEEEECEEEEEEETTEEEEEEECHHHHHHHTTSCHHHHHHHHTTCHHHHHHHHHTTSSCE
T ss_pred cccCCCccEECCCCCCcCccccEEEEEEEEEEeCCCCEEEEEehHHHHHHcCCCHHHHHHHHhcChHHHHHHHHHhhCcE
Confidence 987778999999999999999999999999999999999999999999999999999999988764 889999999
Q ss_pred EEEEEEEEeeccCC
Q psy15132 773 YIFRLRAKLEHYNK 786 (786)
Q Consensus 773 ~~f~v~~k~~~y~~ 786 (786)
|+|+||+++|+|||
T Consensus 400 ~~f~~~~k~~~y~~ 413 (444)
T 4gop_C 400 YMFNCRAKMDTFND 413 (444)
T ss_dssp EEEEEEEEEEEETT
T ss_pred EEEEEEEEeeeeCC
Confidence 99999999999997
No 2
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=100.00 E-value=1.3e-64 Score=572.24 Aligned_cols=340 Identities=35% Similarity=0.652 Sum_probs=304.7
Q ss_pred ccccccCCCcCCCCCeEEEEccCcEEEEccCCCCCCCCceeEeecCccchhccCCCCceEEEEEEEEeccceeEeeccCC
Q psy15132 2 LAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQ 81 (786)
Q Consensus 2 ~v~~A~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g 81 (786)
.|++|+++|++++|+|||.|+.+|.|++|+++ .+||.+.|+|++|++|.+.+.+.+|||||+|++|++++++++|++|
T Consensus 80 ~V~~~~~~y~~~~~~~ei~~~~~T~V~~~~d~--~~iP~~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~i~~k~~g 157 (444)
T 4gop_C 80 RVNIAKKQFSNLQNEYEITFENSTEIEECTDA--TDVPEVKYEFVRINELESVEANQQCDVIGILDSYGELSEIVSKASQ 157 (444)
T ss_dssp EEEECCGGGCSCCCSEEEEECTTCEEEECSCC--SSSCCCCCCBCCGGGGGGSCSSCCCBEEEEEEEECCCEEECCTTTC
T ss_pred EEEecCCccccCCCCEEEEEcCCcEEEEccCc--ccCcceeecccCHHHHhccCCCCceEEEEEEEEcCCcEEEEEccCC
Confidence 57899999999999999999999999999764 5799999999999999998889999999999999999999988778
Q ss_pred ceeeEEEEEEEeCCCCEEEEEeccccccccc----CCCCcEEEEEeEEEeeeCCceeeeecceeEEEECCCchHHHHHHh
Q psy15132 82 KTYMKRDITLVDQSQASVTMTLWGKEAETFD----ASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQG 157 (786)
Q Consensus 82 ~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~----~~~~~Vi~i~~~kv~~f~g~~~ls~~~~s~i~~npd~pe~~~l~~ 157 (786)
++..+|+|+|.|+||.+|+|||||++|..|+ .+.++||+|+++||++|+| ++||++++|+|++|||+|||.+|++
T Consensus 158 ~~~~kr~i~L~D~sg~~i~~tLWg~~A~~f~~~~~~~~~~VV~i~~~kV~~f~G-~~ls~~~~s~i~inPdipea~~l~~ 236 (444)
T 4gop_C 158 RPVQKRELTLVDQGNRSVKLTLWGKTAETFPTNAGVDEKPVLAFKGVKVGDFGG-RSLSMFSSSTMLINPDITESHVLRG 236 (444)
T ss_dssp SCEEEEEEEEECTTCBEEEEEEEHHHHHTSTTSTTSSSCCEEEEESCEEECTTS-SEEECCTTCEEEESCSSHHHHHHHH
T ss_pred ceeeEEEEEEEeCCCCEEEEEEEhhhhhhhhhhhccCCCCEEEEEeEEEeecCC-eEEeccccceEEECCCCHHHHHHHH
Confidence 8899999999999999999999999999998 6789999999999999976 6999999999999999999999999
Q ss_pred hhhccC-CCceeeecccc-------CCCCCCCcchhhhHHHHHhhcCCCCCCCcEEEEEEEEEEEecCceEEeCCCCCCC
Q psy15132 158 WFSTQT-NTRFEPVSQRT-------GGMGGGAAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDC 229 (786)
Q Consensus 158 w~~~~~-~~~~~~~s~~~-------~~~~~~~~~~~~ti~ei~~~~l~~~~~~~~~~v~a~I~~i~~~~~~Y~aC~~~~C 229 (786)
||++.+ ...|.+++... .+.+.....+++||+||++.+++.+++++||+|+|+|+.|+.++|||+|||++.|
T Consensus 237 w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kti~~i~~~~~g~~~~~~~~~v~atI~~i~~~~~~Y~aC~~~~C 316 (444)
T 4gop_C 237 WYDNDGAHAQFQPYTNGGVGGGAMGGGGAGANMAERRTIVQVKDENLGMSEKPDYFNVRATVVYIKQENLYYTACASEGC 316 (444)
T ss_dssp HHHHHTTTSCCBCCCCCC---------CTTCCSSEECCHHHHHHTTTTSSSSCEEEEEEEEEEEECCTTCEEEECCSTTC
T ss_pred HHHcCCCCcccccccccccccccccccccccccccceeHHHHhhhccCCCCCCcEEEEEEEEEEEcCCceEEccCCcccC
Confidence 999887 34566665543 1111223457899999999999988999999999999999999999999995559
Q ss_pred CcceeeCCCceeecccCCCcCCceeEeeeeeEEEEecCCcEEEEeehHHHHHHhCCChhhhhccCCCh-----HHHHHhc
Q psy15132 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH-----PALKKAL 304 (786)
Q Consensus 230 ~kKv~~~~~~~~~C~~C~~~~~~~~~ry~l~~~v~D~Tg~~~~~~F~~~a~~ilg~sa~el~~~~e~~-----~~~~~~~ 304 (786)
+|||.+.++|.|+|++|+++.++|.|||+|++.|+|+||++|+++||+.|++|||++|+||.++.+++ ..+.++.
T Consensus 317 ~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~v~D~Tg~~~~~~F~~~a~~llG~sa~el~~~~~~d~~~~~~~~~~~~ 396 (444)
T 4gop_C 317 NKKVNLDHENNWRCEKCDRSYATPEYRYILSTNVADATGQMWLSGFNEDATQLIGMSAGELHKLREESESEFSAALHRAA 396 (444)
T ss_dssp CCBEEECTTSCEEETTTTEEESSCEEEECEEEEEEETTEEEEEEECHHHHHHHTTSCHHHHHHHHTTCHHHHHHHHHTTS
T ss_pred CCccccCCCccEECCCCCCcCccccEEEEEEEEEEeCCCCEEEEEehHHHHHHcCCCHHHHHHHHhcChHHHHHHHHHhh
Confidence 99999777889999999999999999999999999999999999999999999999999999987653 3588899
Q ss_pred CCEEEEEEeeecccccCccccCCCcceeeEEEeecccccccccCCc
Q psy15132 305 FTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDIITDGTL 350 (786)
Q Consensus 305 ~k~~~f~v~~k~e~y~~~~~~sDG~~~~~~~~la~~ln~~v~~~~L 350 (786)
|++|+|+|++++++|+|+.++ ++ +++-+.++|+..++..|
T Consensus 397 ~k~~~f~~~~k~~~y~~~~r~---~~---~v~~~~~~d~~~~~~~l 436 (444)
T 4gop_C 397 NRMYMFNCRAKMDTFNDTARV---RY---TISRAAPVDFAKAGMEL 436 (444)
T ss_dssp SCEEEEEEEEEEEEETTEEEE---EE---EEEEEEECCHHHHHHHH
T ss_pred CcEEEEEEEEEeeeeCCeeEE---EE---EEEEeeeCCHHHHHHHH
Confidence 999999999999999998876 44 67888888887766544
No 3
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=100.00 E-value=5.8e-44 Score=373.06 Aligned_cols=210 Identities=49% Similarity=0.898 Sum_probs=200.9
Q ss_pred CCceeeecccCCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcce
Q psy15132 439 VVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNC 518 (786)
Q Consensus 439 ~~~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~ 518 (786)
++.++||++|+|++++|+|+|||++|+++|.|++++++|++|+|+|+|++|+|+|++|++++++|++.|++|+||+|++|
T Consensus 5 ~~~~~~I~~L~p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G~I~at~~~~~~~~~~~~l~~G~vy~i~~~ 84 (246)
T 1jmc_A 5 QSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKG 84 (246)
T ss_dssp --CBCCGGGCCTTCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSCEEEEEEEHHHHHHHGGGCCTTCEEEEECC
T ss_pred ccceEEHHHCCCCCCceEEEEEEEEecccceeeCCCCCceEEEEEEECCCCeEEEEEChHHHHHhhhhcccCCEEEECCC
Confidence 45789999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred EEeccCCcccccCCceEEEEccccEEEEccCCCCCCCCcceeeccCcccccccCCCceeeEEEEEEEcccceeEEeecCC
Q psy15132 519 TLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQ 598 (786)
Q Consensus 519 ~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g 598 (786)
.|++++++|++++|+|||+|+.+|.|++|++.+ ++|.+.|+|++|++|.+...+..|||||+|++|+++.++++|++|
T Consensus 85 ~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~~~~--~iP~~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~~~~k~~g 162 (246)
T 1jmc_A 85 TLKIANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNN 162 (246)
T ss_dssp EEEECCGGGCCCCCSEEEECCTTCEEEECCSCS--CCCCCCCCBCCGGGGGGSCTTCEEEEEEEEEEECCCEEEEETTTT
T ss_pred EEEEcccCcccCCCCEEEEEcCCcEEEEccCcc--cCCcceeeeEEHHHHhcccCCCceeEEEEEEEecCeEEEEEecCC
Confidence 999999999999999999999999999998876 799999999999999998788999999999999999999998779
Q ss_pred ceeeEEEEEEeeccccEEEEEEeccccccccCCCCCEEEEEeEEEeecCCc-c
Q psy15132 599 KTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGN-L 650 (786)
Q Consensus 599 ~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~vv~i~~~~V~~f~G~-L 650 (786)
++..+|++.|+|+||.+|+|||||++|+.|+...++||+|+++||++|+|+ |
T Consensus 163 ~~~~~r~~~l~D~sg~~i~~tLWg~~a~~~~~~~~~vv~i~~~~v~~f~g~~l 215 (246)
T 1jmc_A 163 REVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDFGGRSL 215 (246)
T ss_dssp EEEEEEEEEEECTTCCEEEEEEEHHHHHHCCCTTCCEEEEEEEEEECTTSSEE
T ss_pred CccEEEEEEEECCCCCEEEEEEEchhhhhcccCCCCEEEEEEEEEEecCCeEE
Confidence 999999999999999999999999999999999999999999999999887 5
No 4
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=100.00 E-value=1.3e-36 Score=300.33 Aligned_cols=163 Identities=43% Similarity=0.749 Sum_probs=143.6
Q ss_pred cchhhhHHHHHhhcCCCCCCCcEEEEEEEEEEEecCceEEeCCCCCCCCcceeeCCCceeecccCCCcCCceeEeeeeeE
Q psy15132 182 AGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPV 261 (786)
Q Consensus 182 ~~~~~ti~ei~~~~l~~~~~~~~~~v~a~I~~i~~~~~~Y~aC~~~~C~kKv~~~~~~~~~C~~C~~~~~~~~~ry~l~~ 261 (786)
..+++||+||++++||.+++|+||+|+|+|++|+.++|||+|||++.|+|||.++++|.|+|++|++++++|.|||+|++
T Consensus 4 ~~~~kti~qi~~~~lg~~~k~~~f~v~atI~~i~~d~~~Y~aC~~~~CnKKv~~~~~g~~~CekC~~~~~~~~~ry~l~~ 83 (181)
T 1l1o_C 4 NTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSV 83 (181)
T ss_dssp CCCBCCHHHHHHHTTTSSSSCEEEEEEEEEEEECCSTTEEEBCCSTTCCCBCEEETTTEEEETTTTEEESSCCEEEEEEE
T ss_pred ccceEEHHHHhhhccCCCCCCcEEEEEEEEEEEeCCCEEECCCCchhcCCccccCCCCeEECCCCCCcCCCceEEEEEEE
Confidence 35689999999999999999999999999999999999999999556999999878899999999999999999999999
Q ss_pred EEEecCCcEEEEeehHHHHHHhCCChhhhhccCCChH-----HHHHhcCCEEEEEEeeecccccCccccCCCcceeeEEE
Q psy15132 262 MIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----ALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAM 336 (786)
Q Consensus 262 ~v~D~Tg~~~~~~F~~~a~~ilg~sa~el~~~~e~~~-----~~~~~~~k~~~f~v~~k~e~y~~~~~~sDG~~~~~~~~ 336 (786)
.|+||||++|+++||+.|++|||+||+||.++.++++ .|.+++|++|.|+|++++++||++.++ ++ +++
T Consensus 84 ~i~D~Tg~~~~t~F~~~ae~ilG~sA~el~~l~e~~~~~~~~~~~~~~~~~~~f~l~vk~e~yn~e~r~---~~---~v~ 157 (181)
T 1l1o_C 84 NIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRI---KA---TVM 157 (181)
T ss_dssp EEECSSCEEEEEEEHHHHHHHHSSCHHHHHHHTTSCHHHHHHHHHHTTTCEEEEEEEEECCCC-----C---EE---EEE
T ss_pred EEEeCCCCEEEEEEhHHHHHHhCCCHHHHHHHHhhChHHHHHHHHHhcCceEEEEEEEEEeecCCEEEE---EE---EEE
Confidence 9999999999999999999999999999999876643 578899999999999999999998776 44 677
Q ss_pred eecccccccccCCc
Q psy15132 337 LATQLNDIITDGTL 350 (786)
Q Consensus 337 la~~ln~~v~~~~L 350 (786)
-..++|+..++..|
T Consensus 158 ~~~~vd~~~e~~~L 171 (181)
T 1l1o_C 158 DVKPVDYREYGRRL 171 (181)
T ss_dssp EEEECCHHHHHHHH
T ss_pred EeeeCCHHHHHHHH
Confidence 88889887776554
No 5
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=100.00 E-value=1.1e-34 Score=286.54 Aligned_cols=137 Identities=48% Similarity=0.886 Sum_probs=129.8
Q ss_pred cccHHhHHhhcCCCCCCCceEEEEEEEEEEecCceEEeCCCCccccccccccCCceeeeCCCCCcCCceeEEEEEEEEEE
Q psy15132 650 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIG 729 (786)
Q Consensus 650 L~ti~e~~~~~l~~~~~~~~~~v~a~I~~i~~~~~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~i~ 729 (786)
.+||+|++++++|.+++|+||+|+|+|+.|+.++|||+|||+++|+|||++.++|.|+|++|++.+++|.|||+|++.|+
T Consensus 7 ~kti~qi~~~~lg~~~k~~~f~v~atI~~i~~d~~~Y~aC~~~~CnKKv~~~~~g~~~CekC~~~~~~~~~ry~l~~~i~ 86 (181)
T 1l1o_C 7 WKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIA 86 (181)
T ss_dssp BCCHHHHHHHTTTSSSSCEEEEEEEEEEEECCSTTEEEBCCSTTCCCBCEEETTTEEEETTTTEEESSCCEEEEEEEEEE
T ss_pred eEEHHHHhhhccCCCCCCcEEEEEEEEEEEeCCCEEECCCCchhcCCccccCCCCeEECCCCCCcCCCceEEEEEEEEEE
Confidence 48999999999999999999999999999999999999999777999999878899999999999999999999999999
Q ss_pred ecCCcEEEEEehhhHHHHhCCChHHHhccccChH-----HHHHhcCCeEEEEEEEEeeccCC
Q psy15132 730 DWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----ALKKALFTQYIFRLRAKLEHYNK 786 (786)
Q Consensus 730 D~Tg~~~~~~F~~~ae~llG~sa~el~~~~~~~~-----~~~~~~~k~~~f~v~~k~~~y~~ 786 (786)
|+||++|+++|++.|++|||+||+||.++.++++ +|+++.|++|+|++++++|+|||
T Consensus 87 D~Tg~~~~t~F~~~ae~ilG~sA~el~~l~e~~~~~~~~~~~~~~~~~~~f~l~vk~e~yn~ 148 (181)
T 1l1o_C 87 DFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETYND 148 (181)
T ss_dssp CSSCEEEEEEEHHHHHHHHSSCHHHHHHHTTSCHHHHHHHHHHTTTCEEEEEEEEECCCC--
T ss_pred eCCCCEEEEEEhHHHHHHhCCCHHHHHHHHhhChHHHHHHHHHhcCceEEEEEEEEEeecCC
Confidence 9999999999999999999999999999988764 88999999999999999999996
No 6
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=100.00 E-value=1e-34 Score=279.73 Aligned_cols=148 Identities=18% Similarity=0.320 Sum_probs=127.4
Q ss_pred hhhHHHHHhhcCCCCCCCcEEEEEEEEEEEecC-ceEEeCCCCCCCCcceeeCCCceeecccCCCcCCceeEeeeeeEEE
Q psy15132 185 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGS-NTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMI 263 (786)
Q Consensus 185 ~~ti~ei~~~~l~~~~~~~~~~v~a~I~~i~~~-~~~Y~aC~~~~C~kKv~~~~~~~~~C~~C~~~~~~~~~ry~l~~~v 263 (786)
++||+|+++++||.+++ || |+|+|.+|+.+ +|||+||| .|||||.++.+|.|+|++|+++ ++|.|||+|++.|
T Consensus 8 ~~~i~~~~~e~lG~~~~--~f-v~atI~~Ik~d~~~~Y~ACp--~CnKKV~~~~~g~~~CekC~~~-~~~~~RYil~~~i 81 (172)
T 3u50_C 8 EEIIQQAQASEIGQKKE--FY-VYGNLVSIQMKNKLYYYRCT--CQGKSVLKYHGDSFFCESCQQF-INPQVHLMLRAFV 81 (172)
T ss_dssp HHHHHHHHTCCTTCEEE--EE-EEEEEECCCCSSCCEEEECT--TSCCCEEEETTTEEEETTTTEE-CCCEEEECEEEEE
T ss_pred HHHHHHHHHhhCCCCCC--EE-EEEEEEEEcCCCcEEehhch--hhCCEeeeCCCCeEECCCCCCC-CCceEEEEEEEEE
Confidence 58999999999998776 99 99999999999 99999999 7999999778899999999999 9999999999999
Q ss_pred EecCCcEEEEeehHHHHHHhCC-C-------hhhh-hccCCCh-H-----HHHHhcCCEEEEEEeeecccccCccccCCC
Q psy15132 264 GDWTNSVWVTLFQNEAESILGV-T-------AQEV-GESTEDH-P-----ALKKALFTQYIFRLRAKLEHYNGTKKIPDG 328 (786)
Q Consensus 264 ~D~Tg~~~~~~F~~~a~~ilg~-s-------a~el-~~~~e~~-~-----~~~~~~~k~~~f~v~~k~e~y~~~~~~sDG 328 (786)
+|+||++|+++||+.|++|||+ + |+|| .++.|++ + .+.++.|++|.|+||+|+|+|||+.++
T Consensus 82 ~D~TG~~wvt~F~e~ae~ilG~~~~~~~~~~A~eL~~~l~e~~~~~~~~~~~~~~~~k~~~frlr~k~e~ynde~Rv--- 158 (172)
T 3u50_C 82 QDSTGTIPVMIFDQQSSQLINQIDPSIHVQEAGQYVKNCIENGQEEIIRQLFSKLDFARFIFEIQFENKEFNNEQEI--- 158 (172)
T ss_dssp EETTEEEEEEECHHHHHHHHHHHCTTSCGGGHHHHHHHHHTTTCHHHHHHHHHTTTTCEEEEEEEEEECC------E---
T ss_pred EeCCCCEEEEEEhHHHHHHhCCCCCccchhhHHHHHHHHHhcCcHHHHHHHHHhhcCcEEEEEEEEEEcccCCEeEE---
Confidence 9999999999999999999999 9 9999 7776543 2 478899999999999999999998887
Q ss_pred cceeeEEEeecccccc
Q psy15132 329 VNINSFAMLATQLNDI 344 (786)
Q Consensus 329 ~~~~~~~~la~~ln~~ 344 (786)
++ +++-+.++|+.
T Consensus 159 r~---tv~~~~p~~~~ 171 (172)
T 3u50_C 159 AY---KVLKIEKENIK 171 (172)
T ss_dssp EE---EEEEEEEC---
T ss_pred EE---EEEEeeecCcC
Confidence 44 67888888763
No 7
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=100.00 E-value=1.8e-33 Score=271.12 Aligned_cols=130 Identities=18% Similarity=0.376 Sum_probs=120.3
Q ss_pred ccHHhHHhhcCCCCCCCceEEEEEEEEEEecC-ceEEeCCCCccccccccccCCceeeeCCCCCcCCceeEEEEEEEEEE
Q psy15132 651 LLMREIQDQQLGMGDKADYCSVRGIIQVFRGS-NTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIG 729 (786)
Q Consensus 651 ~ti~e~~~~~l~~~~~~~~~~v~a~I~~i~~~-~~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~i~ 729 (786)
+||+++++++||++++ || |+|+|+.|+.+ +|+|+||| .|||||++..+|.|+|++|++. ++|.|||+|++.|+
T Consensus 9 ~~i~~~~~e~lG~~~~--~f-v~atI~~Ik~d~~~~Y~ACp--~CnKKV~~~~~g~~~CekC~~~-~~~~~RYil~~~i~ 82 (172)
T 3u50_C 9 EIIQQAQASEIGQKKE--FY-VYGNLVSIQMKNKLYYYRCT--CQGKSVLKYHGDSFFCESCQQF-INPQVHLMLRAFVQ 82 (172)
T ss_dssp HHHHHHHTCCTTCEEE--EE-EEEEEECCCCSSCCEEEECT--TSCCCEEEETTTEEEETTTTEE-CCCEEEECEEEEEE
T ss_pred HHHHHHHHhhCCCCCC--EE-EEEEEEEEcCCCcEEehhch--hhCCEeeeCCCCeEECCCCCCC-CCceEEEEEEEEEE
Confidence 6789999999998877 88 99999999999 99999999 5999999778999999999999 99999999999999
Q ss_pred ecCCcEEEEEehhhHHHHhCC-C-------hHHH-hccccCh-H-----HHHHhcCCeEEEEEEEEeeccCC
Q psy15132 730 DWTNSVWVTLFQNEAESILGV-T-------AQEV-GESTEDH-P-----ALKKALFTQYIFRLRAKLEHYNK 786 (786)
Q Consensus 730 D~Tg~~~~~~F~~~ae~llG~-s-------a~el-~~~~~~~-~-----~~~~~~~k~~~f~v~~k~~~y~~ 786 (786)
|+||++|+++|++.|++|||+ | |+|| .++++++ + +++++.|++|+|+||+|+|+|||
T Consensus 83 D~TG~~wvt~F~e~ae~ilG~~~~~~~~~~A~eL~~~l~e~~~~~~~~~~~~~~~~k~~~frlr~k~e~ynd 154 (172)
T 3u50_C 83 DSTGTIPVMIFDQQSSQLINQIDPSIHVQEAGQYVKNCIENGQEEIIRQLFSKLDFARFIFEIQFENKEFNN 154 (172)
T ss_dssp ETTEEEEEEECHHHHHHHHHHHCTTSCGGGHHHHHHHHHTTTCHHHHHHHHHTTTTCEEEEEEEEEECC---
T ss_pred eCCCCEEEEEEhHHHHHHhCCCCCccchhhHHHHHHHHHhcCcHHHHHHHHHhhcCcEEEEEEEEEEcccCC
Confidence 999999999999999999999 9 9999 8888766 3 88999999999999999999997
No 8
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=99.97 E-value=1.1e-30 Score=272.47 Aligned_cols=160 Identities=42% Similarity=0.811 Sum_probs=151.4
Q ss_pred ccccccCCCcCCCCCeEEEEccCcEEEEccCCCCCCCCceeEeecCccchhccCCCCceEEEEEEEEeccceeEeeccCC
Q psy15132 2 LAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQ 81 (786)
Q Consensus 2 ~v~~A~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g 81 (786)
.|++|+++|++++|+|||.|+.+|.|++|++. .++|.+.|+|++|++|.+++.+.+|||||+|+++++++++++|++|
T Consensus 85 ~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~~~--~~iP~~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~~~~k~~g 162 (246)
T 1jmc_A 85 TLKIANKQFTAVKNDYEMTFNNETSVMPCEDD--HHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNN 162 (246)
T ss_dssp EEEECCGGGCCCCCSEEEECCTTCEEEECCSC--SCCCCCCCCBCCGGGGGGSCTTCEEEEEEEEEEECCCEEEEETTTT
T ss_pred EEEEcccCcccCCCCEEEEEcCCcEEEEccCc--ccCCcceeeeEEHHHHhcccCCCceeEEEEEEEecCeEEEEEecCC
Confidence 47899999999999999999999999999764 4799999999999999998889999999999999999999998778
Q ss_pred ceeeEEEEEEEeCCCCEEEEEecccccccccCCCCcEEEEEeEEEeeeCCceeeeecceeEEEECCCchHHHHHHhhhhc
Q psy15132 82 KTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST 161 (786)
Q Consensus 82 ~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~Vi~i~~~kv~~f~g~~~ls~~~~s~i~~npd~pe~~~l~~w~~~ 161 (786)
++..+|+|.|.|+||.+|+|||||++|..|+...++||+|+++||++| |+++|+++++|+|++|||+|||++|++||++
T Consensus 163 ~~~~~r~~~l~D~sg~~i~~tLWg~~a~~~~~~~~~vv~i~~~~v~~f-~g~~ls~~~~s~i~inpd~pe~~~l~~w~~~ 241 (246)
T 1jmc_A 163 REVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGARVSDF-GGRSLSVLSSSTIIANPDIPEAYKLRGWFDA 241 (246)
T ss_dssp EEEEEEEEEEECTTCCEEEEEEEHHHHHHCCCTTCCEEEEEEEEEECT-TSSEEECCSSCEEESSCCSHHHHHHHHHHHH
T ss_pred CccEEEEEEEECCCCCEEEEEEEchhhhhcccCCCCEEEEEEEEEEec-CCeEEEecCcceEEECCCCHHHHHHHHHHHh
Confidence 899999999999999999999999999999988999999999999999 6799999999999999999999999999998
Q ss_pred cCC
Q psy15132 162 QTN 164 (786)
Q Consensus 162 ~~~ 164 (786)
+|.
T Consensus 242 ~g~ 244 (246)
T 1jmc_A 242 EGQ 244 (246)
T ss_dssp TTC
T ss_pred cCC
Confidence 763
No 9
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.2e-29 Score=228.01 Aligned_cols=112 Identities=45% Similarity=0.865 Sum_probs=108.4
Q ss_pred CceeeecccCCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceE
Q psy15132 440 VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCT 519 (786)
Q Consensus 440 ~~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~ 519 (786)
.+++||++|+|++++|+|+|||++||++|.|++.+|+|++|+++|+|++|+|+||+|++++++|++.|++|+||+|++|.
T Consensus 2 ~~~~~Is~L~p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G~I~at~~~~~~~~f~~~l~eG~vy~Is~~~ 81 (114)
T 1ynx_A 2 RPIFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEIRATAFNDFATKFNEILQEGKVYYVSKAK 81 (114)
T ss_dssp CCBCCGGGCCTTTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTEEEEEEECHHHHHHHHHHSCSSSEEEEESCE
T ss_pred CceEEHHHCCCCCCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCCeEEEEECHHHHHHHHhhcccCcEEEECCcE
Confidence 46899999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred EeccCCcccccCCceEEEEccccEEEEccCCC
Q psy15132 520 LKPANKKFSSINNDYEMSFTHSTTVIPCNEDE 551 (786)
Q Consensus 520 V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~ 551 (786)
|++++++|++++|+|||+|+++|.|++|+|+.
T Consensus 82 V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~ 113 (114)
T 1ynx_A 82 LQPAKPQFTNLTHPYELNLDRDTVIEECFDES 113 (114)
T ss_dssp EEECCTTTSSSSSCEEEEECSSCEEEESCCCC
T ss_pred EEECCCCcccCCCCEEEEECCCCEEEECCCCC
Confidence 99999999999999999999999999998753
No 10
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=99.59 E-value=1.1e-15 Score=139.72 Aligned_cols=79 Identities=41% Similarity=0.658 Sum_probs=71.7
Q ss_pred ccCccccCCCcceeeEE-EeecccccccccCCcccceEEEEceeEeeeeecCCCCccEEEEEEeeeeeccCcccCccccC
Q psy15132 319 YNGTKKIPDGVNINSFA-MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKIGN 397 (786)
Q Consensus 319 y~~~~~~sDG~~~~~~~-~la~~ln~~v~~~~L~~~~iikl~~~~~~~~~~~~~~~~~~~ii~~~~v~~~~~~~~~~ig~ 397 (786)
-.+|+++|||.|++ ++ ||++|+|+++++|+|++|+||||++|+++.+++| |+++||+++||+.++++++.+||+
T Consensus 43 ~RyRl~lSDG~~~~-~~~mLatqln~~v~~g~l~~~sIirl~~y~~~~v~~~----k~vliIl~levl~~~e~~~~~iG~ 117 (123)
T 2b29_A 43 PRYRLLMSDGLNTL-SSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDG----RRVVILMELEVLKSAEAVGVKIGN 117 (123)
T ss_dssp CEEEEEEECSSEEE-EEEEECGGGHHHHHTTSSCTTCEEEEEEEEEEECSSS----CEEEEEEEEEEEECSTTSCSCCSC
T ss_pred ceEEEEEECcchhe-eeehhHHHHHHHHhcCCccCCCEEEEEEEEEEEecCC----cEEEEEEeeEEeecccccCCccCC
Confidence 35689999999976 55 9999999999999999999999999999999644 899999999999997778889999
Q ss_pred CccCC
Q psy15132 398 PQPLN 402 (786)
Q Consensus 398 p~~~~ 402 (786)
|.+++
T Consensus 118 P~~~~ 122 (123)
T 2b29_A 118 PVPYN 122 (123)
T ss_dssp CEECC
T ss_pred CccCC
Confidence 99875
No 11
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=99.50 E-value=6.1e-14 Score=125.08 Aligned_cols=99 Identities=23% Similarity=0.286 Sum_probs=88.4
Q ss_pred CceeeecccCCCCCceEEEEEEeecCCcceecCCCC-CceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcce
Q psy15132 440 VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARG-SGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNC 518 (786)
Q Consensus 440 ~~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~-~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~ 518 (786)
..++||++|.|+ .+|+|.|||+.++++|.|.+.+| +++++++.|.|++|.|++|+|++.++. .|++|++|.| ++
T Consensus 3 ~~~~~I~dL~~~-~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~a~~---~l~~Gdvv~i-~g 77 (105)
T 3dm3_A 3 KDTYNIGELSPG-MTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLTDI---DVGRGDYVRV-RG 77 (105)
T ss_dssp -CEECGGGCCSS-EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGGGS---CCCTTCEEEE-EE
T ss_pred ccceEHHHCCCC-CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECccccc---ccCCCCEEEE-EE
Confidence 357899999999 79999999999999999987655 589999999999999999999998875 7999999999 99
Q ss_pred EEeccCCcccccCCceEEEEccccEEEEccC
Q psy15132 519 TLKPANKKFSSINNDYEMSFTHSTTVIPCNE 549 (786)
Q Consensus 519 ~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d 549 (786)
+|+.+. .+.+||+++..|.|++++.
T Consensus 78 ~vk~~~------~g~~eL~~g~~~~i~~~~~ 102 (105)
T 3dm3_A 78 YIREGY------YGGLECTANYVEILKKGEK 102 (105)
T ss_dssp EEEECT------TSSEEEEEEEEEEEECCC-
T ss_pred EEEEcc------CCCEEEEeCCceEEEeccc
Confidence 998864 3689999999999998864
No 12
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=99.45 E-value=5.8e-13 Score=122.15 Aligned_cols=109 Identities=18% Similarity=0.267 Sum_probs=94.7
Q ss_pred eeeecccCCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEEe
Q psy15132 442 THPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLK 521 (786)
Q Consensus 442 ~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~ 521 (786)
+.+|++|.|+.++|.+.++|..++++|.|.+.+|.+++++++|.|++|+|++++|++.++ .|++|++|.|++++|.
T Consensus 2 f~~I~dL~~~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~I~~tlW~~~~~----~~~~G~vv~i~~g~v~ 77 (119)
T 1o7i_A 2 EEKVGNLKPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHAG----SIKEGQVVKIENAWTT 77 (119)
T ss_dssp BCCGGGCCTTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGGTT----CCCTTCEEEEEEEEEE
T ss_pred cEEHHHCcCCCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCEEEEEEECChhh----cCCCCCEEEEEeEEEE
Confidence 468999999988999999999999999998777667899999999999999999999874 4899999999999997
Q ss_pred ccCCcccccCCceEEEEccccEEEEccCCCCCCCCcceeeccCccccccc
Q psy15132 522 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEI 571 (786)
Q Consensus 522 ~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~ 571 (786)
.. ++.++|++++.+.|+++++. +|..+++|.+.
T Consensus 78 ~~-------~g~~qL~i~~~~~i~~~~~~----------~~~~~~~l~~~ 110 (119)
T 1o7i_A 78 AF-------KGQVQLNAGSKTKIAEASED----------GFPESSQIPEN 110 (119)
T ss_dssp EE-------TTEEEEEECTTCEEEECCCT----------TCCCGGGSCCC
T ss_pred Ee-------CCEEEEEECCCEEEEEcCCc----------CCCcHHHhhhc
Confidence 64 47799999999999998642 35567777765
No 13
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=99.45 E-value=2.3e-13 Score=119.86 Aligned_cols=93 Identities=26% Similarity=0.360 Sum_probs=80.2
Q ss_pred eeecccCCCCCceEEEEEEeecCCcceecCCCC-CceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEEe
Q psy15132 443 HPIVSLSPYQNKWTIKARVTNKTPIREWNNARG-SGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLK 521 (786)
Q Consensus 443 ~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~-~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~ 521 (786)
.||++|+|+ .+|+|.|||+.++++|.|.+.+| +++++++.|.|++|+|++|+|++.++. .|++|++|.| ++.|+
T Consensus 3 ~kI~dl~~g-~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~I~~tlW~~~~~~---~i~~Gdvv~i-~g~v~ 77 (97)
T 3e0e_A 3 YKISELMPN-LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELADF---EVKKGDIAEV-SGYVK 77 (97)
T ss_dssp ECGGGCCTT-EEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGGGGC---CCCTTCEEEE-EEEEE
T ss_pred eEHHHCCCC-CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECCcccc---ccCCCCEEEE-EEEEE
Confidence 589999999 89999999999999999987555 589999999999999999999999875 7999999999 88886
Q ss_pred ccCCcccccCCceEEEEccccEEEEc
Q psy15132 522 PANKKFSSINNDYEMSFTHSTTVIPC 547 (786)
Q Consensus 522 ~a~~~y~~~~~~yei~f~~~T~I~~~ 547 (786)
.. .+.+||++++++.|+.+
T Consensus 78 ~~-------~~~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 78 QG-------YSGLEISVDNIGIIEKS 96 (97)
T ss_dssp EC---------CEEEEEEEEEEEECC
T ss_pred Ec-------CCeEEEEECCCcEEEEC
Confidence 65 24889999999999864
No 14
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=99.38 E-value=1.5e-12 Score=118.69 Aligned_cols=105 Identities=12% Similarity=0.226 Sum_probs=91.7
Q ss_pred eEeecCccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEeccccccccc-CCCCcEEE
Q psy15132 42 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD-ASNKPVIA 120 (786)
Q Consensus 42 ~~~f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~-~~~~~Vi~ 120 (786)
.|+|+++++|. .+..+|++|+|+++++++++++|+ |++...++++|.|+|| +|++|+||+.+..+. ...++++.
T Consensus 4 ~~~~~~I~~L~---~g~~v~i~~~V~~~~~~~~~~~k~-G~~~~~~~~~l~D~TG-~I~~t~w~~~~~~~~~l~~G~vv~ 78 (115)
T 2k50_A 4 EHRMDTISKLE---EGAETPVTGRVMKISSPRTFTTRK-GREGKLANVIIADDTG-ELRAVFWTENIKLLKKFREGDVIR 78 (115)
T ss_dssp TTCCCCTTTCC---TTCEEEEEEEEEEECCCEECCCTT-SSCCEEEEEEEEETTE-EEEEEEETTGGGGGGTCCTTSEEE
T ss_pred ccceEEHHHCC---CCCEeEEEEEEEECCCceEEEcCC-CCEEEEEEEEEEeCCC-eEEEEEeCchhhhhhcCCCCCEEE
Confidence 46778887775 578899999999999999888775 6556789999999999 999999999987654 47899999
Q ss_pred EEeEEEee-eCCceeeeecceeEEEECCCchH
Q psy15132 121 VKAARVSE-FQGGKTLSLSMSSVLSLNPDIPE 151 (786)
Q Consensus 121 i~~~kv~~-f~g~~~ls~~~~s~i~~npd~pe 151 (786)
|++++|++ |+|..+|++...|.+..+||+..
T Consensus 79 i~g~~v~~~f~g~~qL~~~~~~~i~~~~~~~~ 110 (115)
T 2k50_A 79 IKDVNIRGGFGGRKEAHLMPRSTVEVLDPLEH 110 (115)
T ss_dssp EEEEEECCCSSSSCEEEECTTCCEEEESSCCC
T ss_pred EEeeEEccccCCeEEEEECCCceEEECCcccc
Confidence 99999987 99999999999999999998753
No 15
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=99.37 E-value=2.5e-12 Score=117.88 Aligned_cols=104 Identities=19% Similarity=0.327 Sum_probs=88.5
Q ss_pred ecCccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccccccCCCCcEEEEEeE
Q psy15132 45 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124 (786)
Q Consensus 45 f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~Vi~i~~~ 124 (786)
|++|++|.. ....+|++|+|+++++++++++|+ |+ ...+++.|.|+|| +|++|||++.|..| ..++||.++++
T Consensus 2 f~~I~dL~~--~~~~v~~~~~V~~~~~~~~~~~k~-G~-~~~~~~~l~D~TG-~I~~tlW~~~~~~~--~~G~vv~i~~g 74 (119)
T 1o7i_A 2 EEKVGNLKP--NMESVNVTVRVLEASEARQIQTKN-GV-RTISEAIVGDETG-RVKLTLWGKHAGSI--KEGQVVKIENA 74 (119)
T ss_dssp BCCGGGCCT--TCSSEEEEEEEEEECCCEEECCTT-CC-EEEEEEEEEETTE-EEEEEEEGGGTTCC--CTTCEEEEEEE
T ss_pred cEEHHHCcC--CCCcEEEEEEEEECCCCeeEEecC-CC-EEEEEEEEEeCCC-EEEEEEECChhhcC--CCCCEEEEEeE
Confidence 566777754 234799999999999999988874 65 6789999999999 69999999999765 67899999999
Q ss_pred EEeeeCCceeeeecceeEEEECC--CchHHHHH
Q psy15132 125 RVSEFQGGKTLSLSMSSVLSLNP--DIPECHKL 155 (786)
Q Consensus 125 kv~~f~g~~~ls~~~~s~i~~np--d~pe~~~l 155 (786)
+|.+|+|..+|++...|.|..+| ++|++.+|
T Consensus 75 ~v~~~~g~~qL~i~~~~~i~~~~~~~~~~~~~l 107 (119)
T 1o7i_A 75 WTTAFKGQVQLNAGSKTKIAEASEDGFPESSQI 107 (119)
T ss_dssp EEEEETTEEEEEECTTCEEEECCCTTCCCGGGS
T ss_pred EEEEeCCEEEEEECCCEEEEEcCCcCCCcHHHh
Confidence 99999999999999999999887 46776664
No 16
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=99.32 E-value=1.2e-11 Score=110.23 Aligned_cols=94 Identities=15% Similarity=0.212 Sum_probs=80.8
Q ss_pred eecCccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccccccCCCCcEEEEEe
Q psy15132 44 CFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKA 123 (786)
Q Consensus 44 ~f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~Vi~i~~ 123 (786)
+|++|++|.. +..+||+|+|++++++++++++ +|++..+|+++|.|+|| +|++||||+.|.. ....+++|.| .
T Consensus 4 ~~~~I~dL~~---~~~v~v~g~V~~~~~~r~~~~~-~G~~~~v~~~~l~D~TG-~IrvtlW~~~a~~-~l~~Gdvv~i-~ 76 (105)
T 3dm3_A 4 DTYNIGELSP---GMTATFEGEVISALPIKEFKRA-DGSIGKLKSFIVRDETG-SIRVTLWDNLTDI-DVGRGDYVRV-R 76 (105)
T ss_dssp CEECGGGCCS---SEEEEEEEEEEEEEEEEEEECT-TSCEEEEEEEEEEETTE-EEEEEEEGGGGGS-CCCTTCEEEE-E
T ss_pred cceEHHHCCC---CCeEEEEEEEEECCCceEEEcC-CCCeeEEEEEEEECCCC-cEEEEEECccccc-ccCCCCEEEE-E
Confidence 4677888764 4789999999999999999876 58788999999999999 8999999999986 5678899999 7
Q ss_pred EEEeee-CCceeeeecceeEEE
Q psy15132 124 ARVSEF-QGGKTLSLSMSSVLS 144 (786)
Q Consensus 124 ~kv~~f-~g~~~ls~~~~s~i~ 144 (786)
++++.+ +|+.+|+++..|.|.
T Consensus 77 g~vk~~~~g~~eL~~g~~~~i~ 98 (105)
T 3dm3_A 77 GYIREGYYGGLECTANYVEILK 98 (105)
T ss_dssp EEEEECTTSSEEEEEEEEEEEE
T ss_pred EEEEEccCCCEEEEeCCceEEE
Confidence 777776 468999999888765
No 17
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=99.23 E-value=6e-11 Score=108.08 Aligned_cols=104 Identities=20% Similarity=0.332 Sum_probs=89.5
Q ss_pred CceeeecccCCCCCceEEEEEEeecCCcceecCCCC-CceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcce
Q psy15132 440 VQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARG-SGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNC 518 (786)
Q Consensus 440 ~~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~-~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~ 518 (786)
.++.||++|.|+.. .+|.++|..++++|.|.+.+| ++.++++.|.|++|+|++++|++.++.+ +.|++|++|.|++.
T Consensus 5 ~~~~~I~~L~~g~~-v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~I~~t~w~~~~~~~-~~l~~G~vv~i~g~ 82 (115)
T 2k50_A 5 HRMDTISKLEEGAE-TPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENIKLL-KKFREGDVIRIKDV 82 (115)
T ss_dssp TCCCCTTTCCTTCE-EEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGGGGG-GTCCTTSEEEEEEE
T ss_pred cceEEHHHCCCCCE-eEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCeEEEEEeCchhhhh-hcCCCCCEEEEEee
Confidence 35679999999865 599999999999999977665 3799999999999999999999987765 77999999999999
Q ss_pred EEeccCCcccccCCceEEEEccccEEEEccCCC
Q psy15132 519 TLKPANKKFSSINNDYEMSFTHSTTVIPCNEDE 551 (786)
Q Consensus 519 ~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~ 551 (786)
.|+.. |+ +.++|.+...+.|++++|..
T Consensus 83 ~v~~~---f~---g~~qL~~~~~~~i~~~~~~~ 109 (115)
T 2k50_A 83 NIRGG---FG---GRKEAHLMPRSTVEVLDPLE 109 (115)
T ss_dssp EECCC---SS---SSCEEEECTTCCEEEESSCC
T ss_pred EEccc---cC---CeEEEEECCCceEEECCccc
Confidence 88653 43 67999999999999997643
No 18
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=99.20 E-value=5.4e-11 Score=106.39 Aligned_cols=95 Identities=16% Similarity=0.234 Sum_probs=82.0
Q ss_pred ceeeecccCCCCCceEEEEEEeecCCcceecCCCC-CceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceE
Q psy15132 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARG-SGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCT 519 (786)
Q Consensus 441 ~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~-~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~ 519 (786)
++++|++|.|+...+++.+||+.+++.| ..+ +| ++++.++.|.|++|+|++++|++. |++|++|.|.|+.
T Consensus 2 ~~~kI~dl~pg~~~v~v~~~V~~~~~~~-~~k-~G~~~~v~~~~l~DeTG~I~~tlW~~~-------l~~Gdvv~i~ng~ 72 (106)
T 2k75_A 2 DLVKIRDVSLSTPYVSVIGKITGIHKKE-YES-DGTTKSVYQGYIEDDTARIRISSFGKQ-------LQDSDVVRIDNAR 72 (106)
T ss_dssp CBCCSTTCCTTCSEEEEEEEEEEEEEEE-EEE-TTEEEEEEEEEEECSSCEEEEEEESSC-------CCTTEEEEEEEEE
T ss_pred CcEEHHHcCCCCceEEEEEEEEEccccc-ccc-CCCeeEEEEEEEEcCCCeEEEEEEcCc-------cCCCCEEEEEeeE
Confidence 3578999999988899999999999987 332 33 356999999999999999999987 9999999999999
Q ss_pred EeccCCcccccCCceEEEEccccEEEEccCCC
Q psy15132 520 LKPANKKFSSINNDYEMSFTHSTTVIPCNEDE 551 (786)
Q Consensus 520 V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~ 551 (786)
+... ++.++|++++.+.|+++.+..
T Consensus 73 v~~~-------~g~~~L~v~~~~~I~~~~~~~ 97 (106)
T 2k75_A 73 VAQF-------NGYLSLSVGDSSRIESVNVNI 97 (106)
T ss_dssp EEEE-------TTEEEEEECTTSEEEECCSCC
T ss_pred EeEE-------CCEEEEEECCcEEEEECCCCC
Confidence 8763 477899999999999997643
No 19
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=99.10 E-value=7.5e-10 Score=97.36 Aligned_cols=91 Identities=15% Similarity=0.218 Sum_probs=73.6
Q ss_pred CccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccccccCCCCcEEEEEeEEE
Q psy15132 47 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARV 126 (786)
Q Consensus 47 ~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~Vi~i~~~kv 126 (786)
+++|| .++..++++|.|+++++++++.+++ |.+...+++.|.|+|| +|++|||+++|.. ..+.+++|.+ .++|
T Consensus 4 kI~dl---~~g~~v~i~~~V~~~~~~r~~~~~~-G~~~~v~~~~l~DeTG-~I~~tlW~~~~~~-~i~~Gdvv~i-~g~v 76 (97)
T 3e0e_A 4 KISEL---MPNLSGTINAEVVTAYPKKEFSRKD-GTKGQLKSLFLKDDTG-SIRGTLWNELADF-EVKKGDIAEV-SGYV 76 (97)
T ss_dssp CGGGC---CTTEEEEEEEEEEEECCCEEEC-----CCEEEEEEEEEETTE-EEEEEEEGGGGGC-CCCTTCEEEE-EEEE
T ss_pred EHHHC---CCCCcEEEEEEEEECCCceEEEcCC-CCeeEEEEEEEECCCC-cEEEEEECCcccc-ccCCCCEEEE-EEEE
Confidence 34555 4568999999999999999987764 7677899999999999 9999999999986 5578999999 6799
Q ss_pred eeeCCceeeeecceeEEE
Q psy15132 127 SEFQGGKTLSLSMSSVLS 144 (786)
Q Consensus 127 ~~f~g~~~ls~~~~s~i~ 144 (786)
..|.|...|+++..+.|.
T Consensus 77 ~~~~~~~el~~g~~~~i~ 94 (97)
T 3e0e_A 77 KQGYSGLEISVDNIGIIE 94 (97)
T ss_dssp EEC--CEEEEEEEEEEEE
T ss_pred EEcCCeEEEEECCCcEEE
Confidence 999999999999888764
No 20
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=99.05 E-value=7.5e-10 Score=103.62 Aligned_cols=99 Identities=12% Similarity=0.142 Sum_probs=85.0
Q ss_pred CceeeecccCCCCCceEEEEEEeecCCcc---eecCCCC-------CceEEEEEEEcCCCcEEEEEcchhHHHhhhhccC
Q psy15132 440 VQTHPIVSLSPYQNKWTIKARVTNKTPIR---EWNNARG-------SGKLFSIDLLDESGEIRATMFNDECNRFHDMIEK 509 (786)
Q Consensus 440 ~~~~~I~~L~p~~~~w~I~~RV~~k~~~r---~~~~~~~-------~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~ 509 (786)
..+++|++|.|+..+.++.|||+..+.++ .+.+.+| .+++.++.|.|++|.|+.|+|+++++ .|++
T Consensus 14 p~~~kI~dL~pg~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~I~ftlW~e~~~----~l~~ 89 (145)
T 1wjj_A 14 PVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQVD----LMKP 89 (145)
T ss_dssp CSSCCSTTCCTTCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCEEEEEECTTHHH----HTCT
T ss_pred ccceEHHHcCCCCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcEEEEEEecCCcC----cCCC
Confidence 34789999999998899999999999888 5544334 67899999999999999999999775 4889
Q ss_pred CcEEEEcceEEeccCCcccccCCceEEEEccccEEEEccC
Q psy15132 510 DKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNE 549 (786)
Q Consensus 510 G~vy~is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d 549 (786)
|++|.|.|+.++.. ...++|.+++++.|+..++
T Consensus 90 Gd~v~i~na~v~~~-------~G~~~L~vgk~g~Ie~~~e 122 (145)
T 1wjj_A 90 GATVILRNSRIDMF-------KGTMRLGVDKWGRIEATGA 122 (145)
T ss_dssp TCEEEEEEEEEEEE-------TTEEEEEECTTCCBCCCSC
T ss_pred CCEEEEeccEEEeE-------CCEEEEEECCCEEEEECCC
Confidence 99999999999764 3678999999999988764
No 21
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=98.87 E-value=1.6e-08 Score=90.26 Aligned_cols=92 Identities=18% Similarity=0.268 Sum_probs=77.7
Q ss_pred EeecCccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccccccCCCCcEEEEE
Q psy15132 43 YCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVK 122 (786)
Q Consensus 43 ~~f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~Vi~i~ 122 (786)
|+|++++||.. ....++++|.|.++++.+ .++ +|++...+++.|.|+|| +|.+|||++. ...|.+|-++
T Consensus 1 ~~~~kI~dl~p--g~~~v~v~~~V~~~~~~~--~~k-~G~~~~v~~~~l~DeTG-~I~~tlW~~~-----l~~Gdvv~i~ 69 (106)
T 2k75_A 1 SDLVKIRDVSL--STPYVSVIGKITGIHKKE--YES-DGTTKSVYQGYIEDDTA-RIRISSFGKQ-----LQDSDVVRID 69 (106)
T ss_dssp CCBCCSTTCCT--TCSEEEEEEEEEEEEEEE--EEE-TTEEEEEEEEEEECSSC-EEEEEEESSC-----CCTTEEEEEE
T ss_pred CCcEEHHHcCC--CCceEEEEEEEEEccccc--ccc-CCCeeEEEEEEEEcCCC-eEEEEEEcCc-----cCCCCEEEEE
Confidence 46777888754 124599999999999877 344 47666789999999999 9999999998 5789999999
Q ss_pred eEEEeeeCCceeeeecceeEEEE
Q psy15132 123 AARVSEFQGGKTLSLSMSSVLSL 145 (786)
Q Consensus 123 ~~kv~~f~g~~~ls~~~~s~i~~ 145 (786)
++++..|+|..+|+++..|.|..
T Consensus 70 ng~v~~~~g~~~L~v~~~~~I~~ 92 (106)
T 2k75_A 70 NARVAQFNGYLSLSVGDSSRIES 92 (106)
T ss_dssp EEEEEEETTEEEEEECTTSEEEE
T ss_pred eeEEeEECCEEEEEECCcEEEEE
Confidence 99999999999999999888864
No 22
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=98.79 E-value=3.2e-08 Score=88.83 Aligned_cols=94 Identities=17% Similarity=0.195 Sum_probs=77.1
Q ss_pred ceeeecccCCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEE
Q psy15132 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTL 520 (786)
Q Consensus 441 ~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V 520 (786)
++.+|++|.|+..+.++.+||+.++..| .......++|.|++|+|++|+|++. -.+.|++|++|.|.|+.+
T Consensus 4 ~~~kI~dl~~~~~~v~v~~~V~~~~~~~------~~~~~~~~~l~DeTG~I~~t~W~~~---~~~~~~~G~~V~i~n~~v 74 (109)
T 2kbn_A 4 QLTKIVDIVENGQWANLKAKVIQLWENT------HESISQVGLLGDETGIIKFTIWKNA---ELPLLEQGESYLLRSVVV 74 (109)
T ss_dssp CBCCTTTCCSTTCEEEEEEEEEEEEECC------CSSEEEEEEEECTTCCEEEEEEGGG---CCCCCCTTCEEEEEEEEE
T ss_pred CceEHHHCCCCCCcEEEEEEEEEeEcCC------CCeEEEEEEEECCCCeEEEEEECcc---cccccCCCCEEEEEEEEE
Confidence 4678999999877889999999765422 2346678999999999999999943 125799999999999999
Q ss_pred eccCCcccccCCceEEEEccccEEEEccCC
Q psy15132 521 KPANKKFSSINNDYEMSFTHSTTVIPCNED 550 (786)
Q Consensus 521 ~~a~~~y~~~~~~yei~f~~~T~I~~~~d~ 550 (786)
+.. +...+|++++.+.|++.++.
T Consensus 75 ~~~-------~G~~~L~v~~~~~I~~~~~~ 97 (109)
T 2kbn_A 75 GEY-------NDRFQVQVNKNSSIEKLSEP 97 (109)
T ss_dssp EEE-------TTEEEEEECSSSEEEECSSC
T ss_pred EEE-------CCEEEEEECCceEEEECCCc
Confidence 774 36789999999999987654
No 23
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=98.44 E-value=5.1e-07 Score=84.43 Aligned_cols=100 Identities=12% Similarity=0.167 Sum_probs=79.0
Q ss_pred EeecCccchhccCCCCceEEEEEEEEeccceeEee--ccCCc------eeeEEEEEEEeCCCCEEEEEecccccccccCC
Q psy15132 43 YCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTG--KTNQK------TYMKRDITLVDQSQASVTMTLWGKEAETFDAS 114 (786)
Q Consensus 43 ~~f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~--k~~g~------~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~ 114 (786)
=.|++++||..- ...+++.|.|.+++++..++. +.+|. +...++..|.|+|| +|.+|||++++..+ .
T Consensus 14 p~~~kI~dL~pg--~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG-~I~ftlW~e~~~~l--~ 88 (145)
T 1wjj_A 14 PVFVKVEQLKPG--TTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETG-CILFTARNDQVDLM--K 88 (145)
T ss_dssp CSSCCSTTCCTT--CCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSC-EEEEEECTTHHHHT--C
T ss_pred ccceEHHHcCCC--CCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCc-EEEEEEecCCcCcC--C
Confidence 357788888642 346999999999998652222 22343 56678999999999 99999999988764 4
Q ss_pred CCcEEEEEeEEEeeeCCceeeeecceeEEEECC
Q psy15132 115 NKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNP 147 (786)
Q Consensus 115 ~~~Vi~i~~~kv~~f~g~~~ls~~~~s~i~~np 147 (786)
.|.+|-|+++.++.|+|..+|+++..+.|...+
T Consensus 89 ~Gd~v~i~na~v~~~~G~~~L~vgk~g~Ie~~~ 121 (145)
T 1wjj_A 89 PGATVILRNSRIDMFKGTMRLGVDKWGRIEATG 121 (145)
T ss_dssp TTCEEEEEEEEEEEETTEEEEEECTTCCBCCCS
T ss_pred CCCEEEEeccEEEeECCEEEEEECCCEEEEECC
Confidence 799999999999999999999999888876543
No 24
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=98.44 E-value=1.7e-06 Score=77.50 Aligned_cols=90 Identities=13% Similarity=0.178 Sum_probs=70.1
Q ss_pred ecCccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecc-cccccccCCCCcEEEEEe
Q psy15132 45 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG-KEAETFDASNKPVIAVKA 123 (786)
Q Consensus 45 f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg-~~a~~~~~~~~~Vi~i~~ 123 (786)
|++++||.. .+..+++.|.|+++++. + ++. ..+.+.|.|+|| +|++|+|+ +.+.. ...+.+|-+++
T Consensus 5 ~~kI~dl~~--~~~~v~v~~~V~~~~~~-----~-~~~--~~~~~~l~DeTG-~I~~t~W~~~~~~~--~~~G~~V~i~n 71 (109)
T 2kbn_A 5 LTKIVDIVE--NGQWANLKAKVIQLWEN-----T-HES--ISQVGLLGDETG-IIKFTIWKNAELPL--LEQGESYLLRS 71 (109)
T ss_dssp BCCTTTCCS--TTCEEEEEEEEEEEEEC-----C-CSS--EEEEEEEECTTC-CEEEEEEGGGCCCC--CCTTCEEEEEE
T ss_pred ceEHHHCCC--CCCcEEEEEEEEEeEcC-----C-CCe--EEEEEEEECCCC-eEEEEEECcccccc--cCCCCEEEEEE
Confidence 344555543 26789999999999863 2 232 456799999999 99999999 44432 36799999999
Q ss_pred EEEeeeCCceeeeecceeEEEECC
Q psy15132 124 ARVSEFQGGKTLSLSMSSVLSLNP 147 (786)
Q Consensus 124 ~kv~~f~g~~~ls~~~~s~i~~np 147 (786)
+++.+|+|..+|+++..+.|..-+
T Consensus 72 ~~v~~~~G~~~L~v~~~~~I~~~~ 95 (109)
T 2kbn_A 72 VVVGEYNDRFQVQVNKNSSIEKLS 95 (109)
T ss_dssp EEEEEETTEEEEEECSSSEEEECS
T ss_pred EEEEEECCEEEEEECCceEEEECC
Confidence 999999999999999988886543
No 25
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=98.18 E-value=3.2e-05 Score=81.85 Aligned_cols=94 Identities=16% Similarity=0.198 Sum_probs=75.5
Q ss_pred eEeecCccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccccccC--CCCcEE
Q psy15132 42 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDA--SNKPVI 119 (786)
Q Consensus 42 ~~~f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~--~~~~Vi 119 (786)
.|.|++|++|. .+..+||||+|++++++.. + +|+ -....|+|.|.|...|.|.+|.+..+.+.. ..|+||
T Consensus 3 ~y~y~~l~~l~---~~~~vnvigVV~~~~~p~~--s--~G~-d~~~tl~I~D~S~~gl~v~iF~~~~~~LP~v~~~GDII 74 (294)
T 1xjv_A 3 NYIYTPLNQLK---GGTIVNVYGVVKFFKPPYL--S--KGT-DYCSVVTIVDQTNVKLTCLLFSGNYEALPIIYKNGDIV 74 (294)
T ss_dssp CCCCCCGGGCC---SSEEEEEEEEEEEEEEEEE--C--SSS-SEEEEEEEECTTCCEEEEEEEESSGGGSCCCCSTTCEE
T ss_pred cceEEEHHHhh---CCCeeEEEEEEEEcCCCcc--C--CCC-eEEEEEEEEcCCCCCEEEEEECCChHHCCCCCCCCCEE
Confidence 47889999873 4889999999999987743 2 354 468899999999999999999988877763 789999
Q ss_pred EEEeEEEeeeCCceeeeecceeEE
Q psy15132 120 AVKAARVSEFQGGKTLSLSMSSVL 143 (786)
Q Consensus 120 ~i~~~kv~~f~g~~~ls~~~~s~i 143 (786)
.++.++|..|+|...+....+..+
T Consensus 75 ~l~~vki~~~~g~~~~v~~~~~s~ 98 (294)
T 1xjv_A 75 RFHRLKIQVYKKETQGITSSGFAS 98 (294)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEEEEECCeEEEEccCCeEE
Confidence 999999999998777644443333
No 26
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=98.08 E-value=2.6e-05 Score=75.56 Aligned_cols=95 Identities=8% Similarity=0.153 Sum_probs=76.8
Q ss_pred EeecCccchhc-cCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCC----CCEEEEEecccccccccC--CC
Q psy15132 43 YCFVPLKTIAE-ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS----QASVTMTLWGKEAETFDA--SN 115 (786)
Q Consensus 43 ~~f~~~~~i~~-~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s----~~~i~~tLWg~~a~~~~~--~~ 115 (786)
+.|+++.++.+ +..+..|||||||++.+++.. +. .|+.-....|+|.|+| +..|.|.++.+..+.+.. ..
T Consensus 27 ~~~~~~r~~l~~~~~g~~VNviGVVvd~~~P~~--S~-rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V~~~ 103 (187)
T 1qzg_A 27 LTFQSIRSSQELQKKNTIVNLFGIVKDFTPSRQ--SL-HGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQV 103 (187)
T ss_dssp EEEECHHHHTSCCSSCEEEEEEEEEEEEEEEEE--CS-STTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCST
T ss_pred eeEEEHHHHHhhccCCCEEEEEEEEEEccCcee--cC-CCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCCCCC
Confidence 67888888764 567899999999999998743 20 2543578899999998 668999999998888874 68
Q ss_pred CcEEEEEeEEEeeeCCceeeeecce
Q psy15132 116 KPVIAVKAARVSEFQGGKTLSLSMS 140 (786)
Q Consensus 116 ~~Vi~i~~~kv~~f~g~~~ls~~~~ 140 (786)
|+||.+..++|..|+|...+-....
T Consensus 104 GDIIlL~rvkiq~~~g~~~~v~~~~ 128 (187)
T 1qzg_A 104 GQPLLLHQITLRSYRDRTQGLSKDQ 128 (187)
T ss_dssp TCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCEEEEEEEEEEEECCeEEEEEcCc
Confidence 9999999999999999887744443
No 27
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.07 E-value=2.1e-05 Score=71.00 Aligned_cols=99 Identities=14% Similarity=0.168 Sum_probs=77.8
Q ss_pred ecCccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEeccccccccc--CCCCcEEEEE
Q psy15132 45 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD--ASNKPVIAVK 122 (786)
Q Consensus 45 f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~--~~~~~Vi~i~ 122 (786)
+++|++|.... ...-|.|.|+.+++++.+..++ | +....++.|.|++| +|++|+|++.|..|. ...|.|+-|.
T Consensus 4 ~~~Is~L~p~~--~~w~I~~rV~~k~~~r~~~~~~-~-~g~~~~~~L~De~G-~I~at~~~~~~~~f~~~l~eG~vy~Is 78 (114)
T 1ynx_A 4 IFAIEQLSPYQ--NVWTIKARVSYKGEIKTWHNQR-G-DGKLFNVNFLDTSG-EIRATAFNDFATKFNEILQEGKVYYVS 78 (114)
T ss_dssp BCCGGGCCTTT--CCCEEEEEEEEEEEEEEEECSS-C-EEEEEEEEEEETTE-EEEEEECHHHHHHHHHHSCSSSEEEEE
T ss_pred eEEHHHCCCCC--CceEEEEEEEEeccceEEecCC-C-CceEEEEEEECCCC-eEEEEECHHHHHHHHhhcccCcEEEEC
Confidence 56677775432 3478999999999999987653 4 56678999999999 999999999999985 3789999999
Q ss_pred eEEEee----e---CCceeeeecceeEEEECCC
Q psy15132 123 AARVSE----F---QGGKTLSLSMSSVLSLNPD 148 (786)
Q Consensus 123 ~~kv~~----f---~g~~~ls~~~~s~i~~npd 148 (786)
+++|.. | .+...+++...|.|..-+|
T Consensus 79 ~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d 111 (114)
T 1ynx_A 79 KAKLQPAKPQFTNLTHPYELNLDRDTVIEECFD 111 (114)
T ss_dssp SCEEEECCTTTSSSSSCEEEEECSSCEEEESCC
T ss_pred CcEEEECCCCcccCCCCEEEEECCCCEEEECCC
Confidence 999876 3 2355777888887776554
No 28
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=98.07 E-value=5.6e-05 Score=79.97 Aligned_cols=191 Identities=8% Similarity=0.101 Sum_probs=117.8
Q ss_pred ceeeecccCCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCc-EEEEEcchhHHHhhhhccCCcEEEEcceE
Q psy15132 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNRFHDMIEKDKVYYISNCT 519 (786)
Q Consensus 441 ~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~-I~at~~~~~~~kf~~~l~~G~vy~is~~~ 519 (786)
.++||++|.. .....|.|.|+..+..+. .+|.....+|.|.|++-. |++.+|.+..+.+-...++|||+.+.+++
T Consensus 5 ~y~~l~~l~~-~~~vnvigVV~~~~~p~~---s~G~d~~~tl~I~D~S~~gl~v~iF~~~~~~LP~v~~~GDII~l~~vk 80 (294)
T 1xjv_A 5 IYTPLNQLKG-GTIVNVYGVVKFFKPPYL---SKGTDYCSVVTIVDQTNVKLTCLLFSGNYEALPIIYKNGDIVRFHRLK 80 (294)
T ss_dssp CCCCGGGCCS-SEEEEEEEEEEEEEEEEE---CSSSSEEEEEEEECTTCCEEEEEEEESSGGGSCCCCSTTCEEEEEEEE
T ss_pred eEEEHHHhhC-CCeeEEEEEEEEcCCCcc---CCCCeEEEEEEEEcCCCCCEEEEEECCChHHCCCCCCCCCEEEEEEEE
Confidence 5789999975 456799999997755443 245668899999998743 99999988666665566999999999999
Q ss_pred EeccCCcccccCCceEEEEccccEEEEccCCCCCC-CCcc---ee-------------------------eccCcccccc
Q psy15132 520 LKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN-MPSV---KY-------------------------CFVPLKTIAE 570 (786)
Q Consensus 520 V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~-iP~~---~~-------------------------~f~~i~dl~~ 570 (786)
++..+.. ..+..+....+-..+...... .|.. .| .|..|+||
T Consensus 81 i~~~~g~-------~~~v~~~~~s~~~f~g~~~~~~~p~~~~~~~~~~~~e~~~~~~Lr~w~~~~~~~~~~~~~L~di-- 151 (294)
T 1xjv_A 81 IQVYKKE-------TQGITSSGFASLTFEGTLGAPIIPRTSSKYFNFTTEDHKMVEALRVWASTHMSPSWTLLKLCDV-- 151 (294)
T ss_dssp EEEETTE-------EEEEEEEEEEEEEECCSTTCCCCCBCSCSSCCCCHHHHHHHHHHHHHHHHHCC---CCCCGGGC--
T ss_pred EEEECCe-------EEEEccCCeEEEEECCCCCCCcCCcccCCCcCCCHHHHHHHHHHHHHHHhccCCCCceeEHHHc--
Confidence 9865443 222223222222222211001 1111 11 23344444
Q ss_pred cCCCceeeEEEEEEEcccc--eeEEee-cCCceeeEEEEEEee--------c------cccEEEEEEeccccccc-cCCC
Q psy15132 571 ISPDENIDVLGVCIDAAEL--SSVTGK-TNQKTYMKRDITLVD--------Q------SQASVTMTLWGKEAETF-DASN 632 (786)
Q Consensus 571 ~~~~~~vDViGvV~~V~~~--~~i~~k-~~g~~~~kr~i~l~D--------~------s~~~i~~tLWg~~a~~~-~~~~ 632 (786)
..+.++|+++.|+.+... ..+..+ .||+......+...+ . ...++.+++|++.|.-. ....
T Consensus 152 -~~~~f~DLv~qVv~v~~~~~~~~~LyVwDgT~~~~~~~~~~~~~~~~~gd~~~~~~~~~lt~~V~~~d~h~~~~~~lk~ 230 (294)
T 1xjv_A 152 -QPMQYFDLTCQLLGKAEVDGASFLLKVWDGTRTPFPSWRVLIQDLVLEGDLSHIHRLQNLTIDILVYDNHVHVARSLKV 230 (294)
T ss_dssp -CSSCEEEEEEEEEEEEECSSSEEEEEEECSSCCSSCBCCCCCCSSCCEECHHHHHHHGGGSEEEEEETTHHHHHHHCCT
T ss_pred -ccCCeeeEEEEEEEEEecCCCeEEEEEECCCCCCCCccccccccccccCcccccccccCeeEEEEEEcchhHHHhcCCC
Confidence 446899999999987533 111111 234433222222111 1 11379999999988422 3688
Q ss_pred CCEEEEEeEEEee
Q psy15132 633 KPVIAVKAARVSE 645 (786)
Q Consensus 633 ~~vv~i~~~~V~~ 645 (786)
|..|.|.+++++.
T Consensus 231 Gd~V~l~Nv~~k~ 243 (294)
T 1xjv_A 231 GSFLRIYSLHTKL 243 (294)
T ss_dssp TCEEEEEEEEEEE
T ss_pred CcEEEEeeeEEEe
Confidence 9999999988764
No 29
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=97.79 E-value=7.4e-05 Score=72.39 Aligned_cols=86 Identities=9% Similarity=0.253 Sum_probs=71.0
Q ss_pred eeccCccccccc-CCCceeeEEEEEEEcccceeEEeec-CCceeeEEEEEEeecc----ccEEEEEEeccccccccC--C
Q psy15132 560 YCFVPLKTIAEI-SPDENIDVLGVCIDAAELSSVTGKT-NQKTYMKRDITLVDQS----QASVTMTLWGKEAETFDA--S 631 (786)
Q Consensus 560 ~~f~~i~dl~~~-~~~~~vDViGvV~~V~~~~~i~~k~-~g~~~~kr~i~l~D~s----~~~i~~tLWg~~a~~~~~--~ 631 (786)
+.|+++.++.+. ..+..|+|||+|+++++.. ++ .|+.-....+.|.|.| +..|.|.++.+..+.+.. .
T Consensus 27 ~~~~~~r~~l~~~~~g~~VNviGVVvd~~~P~----~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V~~ 102 (187)
T 1qzg_A 27 LTFQSIRSSQELQKKNTIVNLFGIVKDFTPSR----QSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQ 102 (187)
T ss_dssp EEEECHHHHTSCCSSCEEEEEEEEEEEEEEEE----ECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCS
T ss_pred eeEEEHHHHHhhccCCCEEEEEEEEEEccCce----ecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCCCC
Confidence 567888887654 5688999999999998874 22 3664557899999998 568999999998888873 7
Q ss_pred CCCEEEEEeEEEeecCCc
Q psy15132 632 NKPVIAVKAARVSEFQGN 649 (786)
Q Consensus 632 ~~~vv~i~~~~V~~f~G~ 649 (786)
.|+||.+.+++|+.|+|+
T Consensus 103 ~GDIIlL~rvkiq~~~g~ 120 (187)
T 1qzg_A 103 VGQPLLLHQITLRSYRDR 120 (187)
T ss_dssp TTCEEEEEEEEEEEETTE
T ss_pred CCCEEEEEEEEEEEECCe
Confidence 899999999999999995
No 30
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=97.39 E-value=0.0061 Score=68.52 Aligned_cols=287 Identities=14% Similarity=0.121 Sum_probs=163.2
Q ss_pred CCceeeecccCC-CCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCC-C------c-E-----EEEEcchhHHHhh
Q psy15132 439 VVQTHPIVSLSP-YQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDES-G------E-I-----RATMFNDECNRFH 504 (786)
Q Consensus 439 ~~~~~~I~~L~p-~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~-G------~-I-----~at~~~~~~~kf~ 504 (786)
.-.+++|+++.. ......|.|-|+.-+..+. .+|.....+|.|.|++ . + | .+.+|....+.+
T Consensus 35 ~y~y~~L~~a~~~~~~~VnviGVVvd~~~P~~---T~G~D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~e~L- 110 (495)
T 1jb7_A 35 KYEYVELAKASLTSAQPQHFYAVVIDATFPYK---TNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDL- 110 (495)
T ss_dssp -CCBCCTTTSCSSCCSCEEEEEEEEEECCCEE---CSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGGS-
T ss_pred CCccEEHHHHHhccCCeEEEEEEEeecCCcee---cCCCeEEEEEEEEeCCCCcccccccccccCceEEEEECCChHHC-
Confidence 346889997752 3456799999997776653 3455678899999964 2 1 7 999998765444
Q ss_pred hhc-cCCcEEEEcceEEeccCCccccc-CCce---EEEEccccEEE--Ec--c--CCCCCCCCcc----eeec-------
Q psy15132 505 DMI-EKDKVYYISNCTLKPANKKFSSI-NNDY---EMSFTHSTTVI--PC--N--EDEVGNMPSV----KYCF------- 562 (786)
Q Consensus 505 ~~l-~~G~vy~is~~~V~~a~~~y~~~-~~~y---ei~f~~~T~I~--~~--~--d~~~~~iP~~----~~~f------- 562 (786)
+.+ .+|||+.+.+++|+..++...-+ ...+ -..|....... ++ + +.+ ..|.. .|.|
T Consensus 111 P~V~~~GDII~LhrvkIq~~ng~~~~v~~~~~~SswavF~~~~~~~~~~i~~~~~~~~--~~P~~~S~~~~~~~~~d~~~ 188 (495)
T 1jb7_A 111 PIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSD--TTPFSFSSKHATIEKNEISI 188 (495)
T ss_dssp CCCCEETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEECSSSSCHHHHHHTCCCSCT--TSCSEESSSCCCCCTTHHHH
T ss_pred CCCCCCCCEEEEEEEEEEEECCcEEEEecCCCceEEEEEeCCccccccccCCcccCcc--cCCccccCCCccCCHHHHHH
Confidence 445 79999999999998776543321 1111 13333322000 00 0 000 11211 0111
Q ss_pred --------------------cCccccc-ccCCCceeeEEEEEEEcccceeEEeecCCceeeEEEEEEeeccccEEEEEEe
Q psy15132 563 --------------------VPLKTIA-EISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621 (786)
Q Consensus 563 --------------------~~i~dl~-~~~~~~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLW 621 (786)
.++..|. +...+.++|++|.|+.+.... + .+-.+.+-|.|+..- ++++
T Consensus 189 v~~LR~W~~~~~~~~~~~~~~~f~~L~~di~~~~f~DLv~qVv~~~~~d-------~---~~~~L~VwDgT~~~~-~~~~ 257 (495)
T 1jb7_A 189 LQNLRKWANQYFSSYSVISSDMYTALNKAQAQKGDFDVVAKILQVHELD-------E---YTNELKLKDASGQVF-YTLS 257 (495)
T ss_dssp HHHHHHHHHHHHHHSCSSCGGGSCCGGGGGGCSSCEEEEEEEEEEEECS-------S---SEEEEEEEETTCCEE-EEEE
T ss_pred HHHHHHHHHhcccccccccccchhhhhhhhccCCceeEEEEEeEEeccC-------C---CeEEEEEEeCCCCCc-ceee
Confidence 1222333 333468999999999985431 1 245677888887532 2333
Q ss_pred cccccccc-CCCCCEEEEEeEEEeecCCc-----------c------ccHH-hHHh------------------------
Q psy15132 622 GKEAETFD-ASNKPVIAVKAARVSEFQGN-----------L------LLMR-EIQD------------------------ 658 (786)
Q Consensus 622 g~~a~~~~-~~~~~vv~i~~~~V~~f~G~-----------L------~ti~-e~~~------------------------ 658 (786)
.. ..|. ..+|.|+.|...+..+-.+. | ..+. |+++
T Consensus 258 ~~--~~fP~~~~G~Vlri~~~~~de~~~~l~~~~~~~w~ni~~~~~~sk~~ke~~~~~l~~~~~~~~~~~~~~~~~~~~l 335 (495)
T 1jb7_A 258 LK--LKFPHVRTGEVVRIRSATYDETSTQKKVLILSHYSNIITFIQSSKLAKELRAKIQDDHSVEVASLKKNVSLNAVVL 335 (495)
T ss_dssp ET--TTCTTCCTTCEEEEEEEEECTTCCSSCEEEEEEEEEEEEECTTCHHHHHHHHHSCCCCHHHHHHTTSSSCSSCEEC
T ss_pred cc--ccCCceeeEEEEEEecCccchhhhhhhhhccccccceeEEcccchhhhhhhhcccchhhhhhhhcccccCCCCCcC
Confidence 22 1122 23477877776655543221 0 0010 1000
Q ss_pred -------hcCCC--------CC--CC-----ceEEEEEEEEEEecC---ceEEeCCCCccccccccccCCceeeeCCCCC
Q psy15132 659 -------QQLGM--------GD--KA-----DYCSVRGIIQVFRGS---NTTYKACPSQDCNKKVIDQNNGMYRCEKCNK 713 (786)
Q Consensus 659 -------~~l~~--------~~--~~-----~~~~v~a~I~~i~~~---~~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~ 713 (786)
.+.+. .+ .+ .-|.+...|+.+-+- .|.=+-|+ .|.+. .. ..| .|++
T Consensus 336 T~~~~~~~~~p~ttL~dIL~~~~~~~~v~~K~~fr~~VRVV~~~P~~i~df~~~~~~--~~~~~-~s-~~g-----~~~~ 406 (495)
T 1jb7_A 336 TEVDKKHAALPSTSLQDLFHHADSDKELQAQDTFRTQFYVTKIEPSDVKEWVKGYDR--KTKKS-SS-LKG-----ASGK 406 (495)
T ss_dssp EEECGGGTTSCBCCHHHHHHTTTTCHHHHTCSEEEEEEEEEEEESSSGGGGEEEEET--TTTEE-EC-STT-----CGGG
T ss_pred CeecccCCCCCcEEHHHHhcCcccCccccccccEEEEEEEEEecCCCHHHhhhhhcc--ccccc-cc-ccc-----ccCC
Confidence 00000 00 11 127888888877552 45544477 57764 22 122 2333
Q ss_pred cCCceeEEEEEEEEEEecC-------CcEEEEEehhhHHHHhCCChHHHhc
Q psy15132 714 EFNTFTYRLILPVMIGDWT-------NSVWVTLFQNEAESILGVTAQEVGE 757 (786)
Q Consensus 714 ~~~~~~~ry~l~~~i~D~T-------g~~~~~~F~~~ae~llG~sa~el~~ 757 (786)
. .+.|++.+.|.|.| +.+.+.++|+.|.++|++.|.+|.+
T Consensus 407 ~----~~~~~f~LlveD~t~~~~~~~~ri~l~v~g~~~a~Fl~l~a~nL~~ 453 (495)
T 1jb7_A 407 G----DNIFQVQFLVKDASTQLNNNTYRVLLYTQDGLGANFFNVKADNLHK 453 (495)
T ss_dssp C----EEEEEEEEEEECGGGTTBSEEEEEEEECTTSTTTTTTSSCCCCTTT
T ss_pred C----CceEEEEEEEecCCCCCCCcccEEEEEEeCcchheecCCChHhhhc
Confidence 2 34677788999999 9999999999999999999998854
No 31
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=97.23 E-value=0.0021 Score=74.23 Aligned_cols=153 Identities=10% Similarity=0.133 Sum_probs=108.3
Q ss_pred eEEEEEEEcCC---CcEEEEEcchhHHHhhhhccCCcEEEEcceEEeccCCcccccCCceEEEEccccEEEEccCCCCCC
Q psy15132 478 KLFSIDLLDES---GEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGN 554 (786)
Q Consensus 478 ~~~~~~L~D~~---G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~ 554 (786)
.++.+-+.|-. .+.-.++|+..-+ ..+.|+||++|.|.+....... .+.-....+|+-.+.|.+.+++..+. .
T Consensus 511 p~~klRV~d~~~~~k~~iLSIW~P~ed-l~s~L~EG~~y~iy~L~~s~s~--~~~~~~~lqLtAtk~T~~~~L~~~~~-~ 586 (738)
T 1miu_A 511 TVWKLRVTSYKKKEKSALLSIWRPSSD-LSSLLTEGKRYRIYHLAVSKSK--SKFERPSIQLTATKRTQYQQLPVSSE-T 586 (738)
T ss_dssp CEEEEEEEESSSSCCCEEEEEESCCHH-HHHHCCSSCEEEEEEECCCCCC--CSSSCCSCEEEEEEEEEEEEECCCHH-H
T ss_pred eeEEEEEEeccCCCceEEEEEeCCChH-HHhhccCCcEEEEEEeeccCCC--ccCccceEEEeecccceeEECCcchh-h
Confidence 34555566632 3688999997644 6778999999999997654432 22223567899999999999864321 1
Q ss_pred CCc-ce-eeccCcccccc---cCCCceeeEEEEEEEcccceeEEeecCCceeeEEEEEEeeccccEEEEEEecccccccc
Q psy15132 555 MPS-VK-YCFVPLKTIAE---ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD 629 (786)
Q Consensus 555 iP~-~~-~~f~~i~dl~~---~~~~~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~ 629 (786)
+++ +. =..++|++|.+ .....-+|++|+|+.|+... | ..-.+.|.|.+..-+-+-.|+..+++
T Consensus 587 ~~~~~~pR~~~~~~~l~~~~f~p~~~EvDivG~Vv~v~~~~-------~---~~~~vylsD~~~nll~Ikf~~~l~eD-- 654 (738)
T 1miu_A 587 LLQVYQPRESLHFSRLSDPAFQPPCSEVDVVGVVVSVVKPI-------G---LAPLVYLSDECLNLLVVKFGIDLNED-- 654 (738)
T ss_dssp HTTTCCCCCBCCSGGGGSSSCCTTTTEEEEEEEEEEEECCT-------T---SCCEEEEECSSSCEEEEEESSCCCSC--
T ss_pred hccccCCcceeeHHHhcCccccCCCCceeEEEEEEEEcccC-------c---ccceEEEEcCCCcEEEEEEecCchhh--
Confidence 111 11 12356777776 35678899999999996532 2 23378899999888899999999876
Q ss_pred CCCCCEEEEEeEEEeec
Q psy15132 630 ASNKPVIAVKAARVSEF 646 (786)
Q Consensus 630 ~~~~~vv~i~~~~V~~f 646 (786)
..++.+|++.+...+..
T Consensus 655 ~~~~~~va~sNL~~r~~ 671 (738)
T 1miu_A 655 IKPRVLIAASNLQCQPE 671 (738)
T ss_dssp CCSSCEEEEEEEECCSC
T ss_pred CccccEEEEeeeEeecc
Confidence 88899999999877643
No 32
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}
Probab=97.14 E-value=0.04 Score=49.37 Aligned_cols=159 Identities=18% Similarity=0.300 Sum_probs=109.8
Q ss_pred eeeecccCCCCCc--eEEEEEEeecCCcceecCCCCCceEEEEEEEcCCC-cEEEEEcchhHHHhhhhccCCcEEEEcce
Q psy15132 442 THPIVSLSPYQNK--WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNC 518 (786)
Q Consensus 442 ~~~I~~L~p~~~~--w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G-~I~at~~~~~~~kf~~~l~~G~vy~is~~ 518 (786)
...|+.|..+.++ +...+||+.|+. +|.+.. +.+.|-++-.|... +|...+|.. +|.-|..|++|+-|++.++
T Consensus 11 tllisqlqvgknrfsfkfegrvvykss--tfqnqq-dskyffitaqdannqeinlsfwqk-vdqsyqtlkvgqyyyfigg 86 (213)
T 3u58_A 11 TLLISQLQVGKNRFSFKFEGRVVYKSS--TFQNQQ-DSKYFFITAQDANNQEINLSFWQK-VDQSYQTLKVGQYYYFIGG 86 (213)
T ss_dssp EECGGGCCTTSCTTSEEEEEEEEEECC--CBCCST-TCCBEEEEEECTTSCEEEEEECSS-HHHHHHHCCTTCEEEEESC
T ss_pred hhhhhhhhhccceeeEEeeeEEEEeec--cccccc-cccEEEEEeecCCCceechHHHHH-hhhhhheeeeceEEEEEcc
Confidence 3568889888765 588899999986 777754 46889999999887 699999986 5777889999999999999
Q ss_pred EEeccCCcccccCCceEEEEcc-ccEEEEccCCCCCCCCcceeeccCcccccccCCCceeeEEEEEEEcccceeEEeecC
Q psy15132 519 TLKPANKKFSSINNDYEMSFTH-STTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTN 597 (786)
Q Consensus 519 ~V~~a~~~y~~~~~~yei~f~~-~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~ 597 (786)
.|+.- .+..|+.|.- +-.|.+-+.-..+.- .-.-|+++... ......|++.|+.+...
T Consensus 87 evkqf-------knnlelkfkfgdyqiipketlggsgg-----stllisevlkt-skqylsvlaqvvdiqss-------- 145 (213)
T 3u58_A 87 EVKQF-------KNNLELKFKFGDYQIIPKETLGGSGG-----STLLISEVLKT-SKQYLSVLAQVVDIQSS-------- 145 (213)
T ss_dssp EEEEC-------SSSEEEEECSSCCEEEESTTTTCSTT-----CCBCHHHHTTC-CCSEEEEEEEEEEEEEC--------
T ss_pred cHhhh-------ccceEEEEecCceEEechhhcCCCCC-----ceeehHHHHHH-hHHHHHHHHHhhccccC--------
Confidence 99763 4677888773 455655433210011 11224455443 34577888888776432
Q ss_pred CceeeEEEEEEeeccc-cEEEEEEeccccccc
Q psy15132 598 QKTYMKRDITLVDQSQ-ASVTMTLWGKEAETF 628 (786)
Q Consensus 598 g~~~~kr~i~l~D~s~-~~i~~tLWg~~a~~~ 628 (786)
.+ ...+.|.|.|. ..+.+.++-+.+-++
T Consensus 146 dk---nirlkicdnscnqelkvvifpdlcyew 174 (213)
T 3u58_A 146 DK---NIRLKICDNSCNQELKVVIFPDLCYEW 174 (213)
T ss_dssp SS---CEEEEEECTTCSCCEEEEECTTTTGGG
T ss_pred CC---ceEEEeecccccceeEEEEchhHhhHh
Confidence 11 13466788884 478899888766443
No 33
>3u4v_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 1.80A {Tetrahymena thermophila}
Probab=97.02 E-value=0.0066 Score=49.60 Aligned_cols=87 Identities=23% Similarity=0.399 Sum_probs=70.7
Q ss_pred eeeecccCCCCCc--eEEEEEEeecCCcceecCCCCCceEEEEEEEcCCC-cEEEEEcchhHHHhhhhccCCcEEEEcce
Q psy15132 442 THPIVSLSPYQNK--WTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNRFHDMIEKDKVYYISNC 518 (786)
Q Consensus 442 ~~~I~~L~p~~~~--w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G-~I~at~~~~~~~kf~~~l~~G~vy~is~~ 518 (786)
...|+.|..+.++ +...+||+.|+. +|.|.. +.+.|-++-.|... +|...+|.. +|.-|..|++|+-|++.++
T Consensus 15 tllisqlqvgknrfsfkfegrvvykss--tfqnqq-dskyffitaqdannqeinmsfwqk-vdqsyqtlkvgqyyyfigg 90 (117)
T 3u4v_A 15 TLLISQLQVGKNRFSFKFEGRVVYKSS--TFQNQQ-DSKYFFITAQDANNQEINMSFWQK-VDQSYQTLKVGQYYYFIGG 90 (117)
T ss_dssp EECGGGCCTTCCTTSCEEEEEEEEECC--CEECTT-SCEEEEEEEECTTSCEEEEEEESS-THHHHTTCCTTCEEEEESC
T ss_pred heehhhhhcccceeeEEeeeEEEEeec--cccccc-cccEEEEEeecCCCceechHHHHH-hhhhhheEeeceEEEEEcc
Confidence 4578889888765 588999999986 777754 46899999999887 699999986 5777889999999999999
Q ss_pred EEeccCCcccccCCceEEEEc
Q psy15132 519 TLKPANKKFSSINNDYEMSFT 539 (786)
Q Consensus 519 ~V~~a~~~y~~~~~~yei~f~ 539 (786)
.|+.- .+..|+.|.
T Consensus 91 evkqf-------knnlelkfk 104 (117)
T 3u4v_A 91 EVKQF-------KNNLELKFK 104 (117)
T ss_dssp EEEEE-------TTEEEEEEE
T ss_pred chhhh-------ccceEEEEe
Confidence 99763 356777765
No 34
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=96.96 E-value=0.0031 Score=70.93 Aligned_cols=104 Identities=22% Similarity=0.272 Sum_probs=77.8
Q ss_pred ceeEeecCccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCC-------EE-----EEEecccc
Q psy15132 40 SVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQA-------SV-----TMTLWGKE 107 (786)
Q Consensus 40 ~~~~~f~~~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~-------~i-----~~tLWg~~ 107 (786)
...|.|++|+++.. ..+..|||||||++++++.. + .|+ -....|+|.|.|-. .+ .|.++.+.
T Consensus 33 ~~~y~y~~L~~a~~-~~~~~VnviGVVvd~~~P~~--T--~G~-D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~ 106 (495)
T 1jb7_A 33 GHKYEYVELAKASL-TSAQPQHFYAVVIDATFPYK--T--NQE-RYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKR 106 (495)
T ss_dssp ---CCBCCTTTSCS-SCCSCEEEEEEEEEECCCEE--C--SSS-CEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESS
T ss_pred cCCCccEEHHHHHh-ccCCeEEEEEEEeecCCcee--c--CCC-eEEEEEEEEeCCCCcccccccccccCceEEEEECCC
Confidence 34589999998874 35789999999999998862 2 254 46889999998765 37 99999988
Q ss_pred cccccC--CCCcEEEEEeEEEeeeCCceeeeec--ceeEE-EECCCc
Q psy15132 108 AETFDA--SNKPVIAVKAARVSEFQGGKTLSLS--MSSVL-SLNPDI 149 (786)
Q Consensus 108 a~~~~~--~~~~Vi~i~~~kv~~f~g~~~ls~~--~~s~i-~~npd~ 149 (786)
.+.+.. ..|+||.++.++|..|+|...+... ..|.| ++.++.
T Consensus 107 ~e~LP~V~~~GDII~LhrvkIq~~ng~~~~v~~~~~~SswavF~~~~ 153 (495)
T 1jb7_A 107 FEDLPIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDK 153 (495)
T ss_dssp GGGSCCCCEETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEECSSS
T ss_pred hHHCCCCCCCCCEEEEEEEEEEEECCcEEEEecCCCceEEEEEeCCc
Confidence 777764 4699999999999999998775433 22454 555433
No 35
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=94.03 E-value=1.1 Score=46.94 Aligned_cols=180 Identities=10% Similarity=0.104 Sum_probs=96.4
Q ss_pred CCceEEEEEEeecCCcceecCCCCCceEEEEEEE------cCCC------c-EEEEEcchhHHHhhhh-ccCCcEEEEcc
Q psy15132 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------DESG------E-IRATMFNDECNRFHDM-IEKDKVYYISN 517 (786)
Q Consensus 452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D~~G------~-I~at~~~~~~~kf~~~-l~~G~vy~is~ 517 (786)
+++..|.+||...-.+|...+ | ..+.+|.|+ |++| + |++++|+.+++.+... |+.|+.++|.+
T Consensus 5 mN~V~LiGrL~~dPelr~t~~--G-~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae~~~~~~l~KG~~V~VeG 81 (301)
T 1se8_A 5 MNHVYLIGALARDPELRYTGN--G-MAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEG 81 (301)
T ss_dssp EEEEEEEEEESSCCEEEECTT--S-CEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEEEEEE
T ss_pred eeEEEEEEEECCCceEEECCC--C-CEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHHHHHhhCCCCCCEEEEEE
Confidence 467899999999888887643 2 256666653 2334 2 8999999999999998 99999999997
Q ss_pred e-EEeccCCcccccCCceEEEEccccEEEEccCCCCCCCCcceeeccCcccccccCCCceeeEEEEEEEcccceeEEeec
Q psy15132 518 C-TLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKT 596 (786)
Q Consensus 518 ~-~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~ 596 (786)
. +.+....+=......++|..+ .|+.+.... ... --....+.-......|-++|.|..--++ -.+.
T Consensus 82 ~L~~r~~~dkdG~~r~~~ev~a~---~i~~l~~~~-----~~~--~d~~gg~rm~~mmN~V~L~GrL~~dPel--r~t~- 148 (301)
T 1se8_A 82 TLEYRQWEAPEGGKRSAVNVKAL---RMEQLGTQP-----ELI--QDAGGGVRMSGAMNEVLVLGNVTRDPEI--RYTP- 148 (301)
T ss_dssp EEEEEEEC-----CEEEEEEEEE---EEEECSSCC-----CEE--ECTTSCEEEETCEEEEEEEEEECSCCEE--EECT-
T ss_pred EEEeeeEECCCCCEEEEEEEEEe---EEEEeeccc-----ccc--cccccccchhcceeEEEEEEEECcCCEE--EECC-
Confidence 4 332322110000112233322 233332111 000 0000000000011246788888653222 2223
Q ss_pred CCceeeEEEEEE----eeccc------cEEEEEEecccccccc-CCCCCEEEEEe-EEEeecC
Q psy15132 597 NQKTYMKRDITL----VDQSQ------ASVTMTLWGKEAETFD-ASNKPVIAVKA-ARVSEFQ 647 (786)
Q Consensus 597 ~g~~~~kr~i~l----~D~s~------~~i~~tLWg~~a~~~~-~~~~~vv~i~~-~~V~~f~ 647 (786)
+|+.+..-.|-. .|..| .-+.|++||..|+.+. ...|..|.+.| .+.+.|.
T Consensus 149 ~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~l~KG~~V~V~GrL~~~~y~ 211 (301)
T 1se8_A 149 AGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKELRKGDPVMIMGRLVNEGWT 211 (301)
T ss_dssp TCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTCCTTCEEEEEEEEEEEECC
T ss_pred CCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHhcCCCCEEEEEEEEeeeeEE
Confidence 366544333322 23223 2599999999988653 57788777775 3455563
No 36
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=93.85 E-value=0.68 Score=42.82 Aligned_cols=99 Identities=14% Similarity=0.207 Sum_probs=62.5
Q ss_pred ccchhccCCCCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeC----------------------CCCEEEEEecc
Q psy15132 48 LKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ----------------------SQASVTMTLWG 105 (786)
Q Consensus 48 ~~~i~~~~~~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~----------------------s~~~i~~tLWg 105 (786)
|+-|..+..+.++|++|.|+.+-.- + .+-.+.+.|- ...++.||||+
T Consensus 5 f~llkdv~~~~F~Dl~~qVv~~~~~--------~---~~~~LyVTDYT~N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd 73 (143)
T 4hik_A 5 FSLLSQITPHQRCSFYAQVIKTWYS--------D---KNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWD 73 (143)
T ss_dssp CCCGGGCCSSCEEEEEEEEEEEEEC--------S---SCEEEEEECSCCCTTSCCBCTTCTTCSCCCCCBSCCEEEEECH
T ss_pred hhhHHhCCCCCeEEEEEEEEEEEcC--------C---CeEEEEEecCCCCCcccccccCCCCccccCCCCcEEEEEEEEC
Confidence 4445566679999999999985321 0 1222333332 12389999999
Q ss_pred ccccccc--CCCCcEEEEEeEEEeeeCCc-eeeeeccee-------EEEECCCchHHHHHHh
Q psy15132 106 KEAETFD--ASNKPVIAVKAARVSEFQGG-KTLSLSMSS-------VLSLNPDIPECHKLQG 157 (786)
Q Consensus 106 ~~a~~~~--~~~~~Vi~i~~~kv~~f~g~-~~ls~~~~s-------~i~~npd~pe~~~l~~ 157 (786)
.+|.-.. ...|..|.|++++++.-.++ ..-.+...+ ...++|+.|...+|..
T Consensus 74 ~ha~~ar~~lk~Gd~v~L~Nv~iK~~~~g~LEG~l~~dr~~~~ki~v~~ld~~~~~lk~ll~ 135 (143)
T 4hik_A 74 EHDFYCRNYIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSEEPELNEIKS 135 (143)
T ss_dssp HHHHHHTTTCCTTCEEEEEEEEEEECTTSCEEEEECCCTTCCSCCEEEEECTTCGGGHHHHH
T ss_pred cHHHHHHhhCCCCCEEEEEeEEEeecCCceEEEEEcCCCCCCCcceEEEcCCCCHHHHHHHH
Confidence 9986542 46789999999988765433 222332221 2246776688877744
No 37
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=93.79 E-value=0.23 Score=45.77 Aligned_cols=62 Identities=11% Similarity=0.213 Sum_probs=46.0
Q ss_pred ceeeEEEEEEEcccceeEEeecCCceeeEEEEEEeeccccEEEEEEeccccc-----cccCCCCCEEEEEeEEEeecCCc
Q psy15132 575 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE-----TFDASNKPVIAVKAARVSEFQGN 649 (786)
Q Consensus 575 ~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~-----~~~~~~~~vv~i~~~~V~~f~G~ 649 (786)
..|.++|+|.++..- .....+.|.|.|| .|.+.+|.+..+ .-....|.+|.+.| +++.|+|+
T Consensus 37 ~~V~iVG~V~~~~~~-----------~~~~~~~ldD~TG-~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G-~v~~f~g~ 103 (136)
T 4gop_B 37 GQLTFVAVVRNISRN-----------ATNVAYSVEDGTG-QIEVRQWLDSSSDDSSKASEIRNNVYVRVLG-TLKSFQNR 103 (136)
T ss_dssp CEEEEEEEEEEEEEC-----------SSEEEEEEECSSC-EEEEEEECC--------CCSCCTTCEEEEEE-EEEEETTE
T ss_pred EEEEEEEEEEEEEec-----------CCeEEEEEECCCC-CEEEEEecccCCcccccccccCCCCEEEEEE-EEEEeCCE
Confidence 468999999987431 1366899999999 899999987543 11256788888877 58889996
No 38
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=93.74 E-value=0.32 Score=44.76 Aligned_cols=68 Identities=12% Similarity=0.224 Sum_probs=49.1
Q ss_pred CceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEeccccccc----c-cCCCCcEEEEEeEEEeeeCCc
Q psy15132 58 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET----F-DASNKPVIAVKAARVSEFQGG 132 (786)
Q Consensus 58 ~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~----~-~~~~~~Vi~i~~~kv~~f~g~ 132 (786)
..|.++|+|.++.+- .....++|-|.|| .|.+.+|.+.... . ....+.+|-+.| +++.|+|.
T Consensus 37 ~~V~iVG~V~~~~~~-----------~~~~~~~ldD~TG-~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G-~v~~f~g~ 103 (136)
T 4gop_B 37 GQLTFVAVVRNISRN-----------ATNVAYSVEDGTG-QIEVRQWLDSSSDDSSKASEIRNNVYVRVLG-TLKSFQNR 103 (136)
T ss_dssp CEEEEEEEEEEEEEC-----------SSEEEEEEECSSC-EEEEEEECC--------CCSCCTTCEEEEEE-EEEEETTE
T ss_pred EEEEEEEEEEEEEec-----------CCeEEEEEECCCC-CEEEEEecccCCcccccccccCCCCEEEEEE-EEEEeCCE
Confidence 478999999998421 1356799999999 8999999875431 1 125677877777 57899998
Q ss_pred eeeeec
Q psy15132 133 KTLSLS 138 (786)
Q Consensus 133 ~~ls~~ 138 (786)
+.|...
T Consensus 104 ~qi~~~ 109 (136)
T 4gop_B 104 RSISSG 109 (136)
T ss_dssp EEEEES
T ss_pred EEEEEE
Confidence 888754
No 39
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=93.47 E-value=0.64 Score=42.44 Aligned_cols=80 Identities=16% Similarity=0.221 Sum_probs=53.5
Q ss_pred CceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEeccccccc---c-cCCCCcEEEEEeEEEeeeCCce
Q psy15132 58 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET---F-DASNKPVIAVKAARVSEFQGGK 133 (786)
Q Consensus 58 ~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~---~-~~~~~~Vi~i~~~kv~~f~g~~ 133 (786)
..|.++|+|.++.+- .....++|-|.||.+|++..|.+.... . ....+.+|-+.| +++.|+|.+
T Consensus 32 ~~V~iVG~V~~~~~~-----------~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G-~l~~f~g~~ 99 (132)
T 3kdf_D 32 SQVTIVGIIRHAEKA-----------PTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAG-HLRSFQNKK 99 (132)
T ss_dssp CEEEEEEEEEEEEEC-----------SSEEEEEEECSSSSCEEEEEEC---------CCCCTTCEEEEEE-EEEEETTEE
T ss_pred EEEEEEEEEEEEEEc-----------CCeEEEEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEEE-EEEeECCEE
Confidence 468899999998421 135679999999989999999876432 1 125677777777 588899988
Q ss_pred eeeecceeEEEECCCchHH
Q psy15132 134 TLSLSMSSVLSLNPDIPEC 152 (786)
Q Consensus 134 ~ls~~~~s~i~~npd~pe~ 152 (786)
.|... .|..-.|..|.
T Consensus 100 qi~~~---~ir~v~d~Nei 115 (132)
T 3kdf_D 100 SLVAF---KIMPLEDMNEF 115 (132)
T ss_dssp EEEEE---EEEECSSTHHH
T ss_pred EEEEE---EEEEcCCccHH
Confidence 88753 44444455443
No 40
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=93.06 E-value=2 Score=44.10 Aligned_cols=179 Identities=12% Similarity=0.160 Sum_probs=96.8
Q ss_pred CCceEEEEEEeecCCcceecCCCCCceEEEEEEE------cCCC------c-EEEEEcchhHHHhhhhccCCcEEEEcce
Q psy15132 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------DESG------E-IRATMFNDECNRFHDMIEKDKVYYISNC 518 (786)
Q Consensus 452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D~~G------~-I~at~~~~~~~kf~~~l~~G~vy~is~~ 518 (786)
+++..|.|||.+--.+|...+ | ..+.+|.|+ |+.| . |++++|+.+++.....|+.|+.+.|.+.
T Consensus 5 ~N~v~L~G~l~~dpelr~t~~--G-~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~Ae~~~~~l~KG~~V~V~G~ 81 (264)
T 2fxq_A 5 LNQVFLIGTLTARPDMRYTPG--G-LAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEMWGDLLEKGQLIFVEGR 81 (264)
T ss_dssp EEEEEEEEEESSCCCCEECTT--C-CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTTCCTTCEEEEEEE
T ss_pred eeEEEEEEEeccCCeEEECCC--C-CEEEEEEEEECCcEECCCCCEecccEEEEEEEEchHHHHHHHhCCCCCEEEEEEE
Confidence 467899999999888887643 2 256666553 4445 2 8999999999999999999999999974
Q ss_pred E-EeccCCcccccCCceEEEEccccEEEEccCCCCCCCCcceeeccCcccccccCCCceeeEEEEEEEcccceeEEeecC
Q psy15132 519 T-LKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTN 597 (786)
Q Consensus 519 ~-V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~ 597 (786)
- .+.... =.......+|..+ .|..+........... .....-......|-++|.|..--++. .+. +
T Consensus 82 L~~~~~~~-dG~~r~~~ev~a~---~i~~l~~~~~~~~~d~------~g~~~m~~~~N~v~l~G~l~~dpe~r--~t~-~ 148 (264)
T 2fxq_A 82 LEYRQWEK-DGEKKSEVQVRAE---FIDPLEGRGRETLEDA------RGQPRLRRALNQVILMGNLTRDPDLR--YTP-Q 148 (264)
T ss_dssp EEEC----------CCEEEEEE---EEEECCCC--------------------CCCCEEEEEEEEESSCCCCE--ECT-T
T ss_pred EEeeeEEe-CCEEEEEEEEEEE---EEEECcCCcccccccc------ccccccccceEEEEEEEEECCCCEEE--ECC-C
Confidence 2 222211 0011122344433 2333321100000000 00000000123577889887533332 222 3
Q ss_pred CceeeEEEEEEeec-------cccEEEEEEecccccccc-CCCCCEEEEEe-EEEeec
Q psy15132 598 QKTYMKRDITLVDQ-------SQASVTMTLWGKEAETFD-ASNKPVIAVKA-ARVSEF 646 (786)
Q Consensus 598 g~~~~kr~i~l~D~-------s~~~i~~tLWg~~a~~~~-~~~~~vv~i~~-~~V~~f 646 (786)
|+.+..-.|-.-.. .-.-++|++||..|+.+. ...|..|.+.| .+.+.|
T Consensus 149 G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~~l~KG~~V~V~G~l~~~~~ 206 (264)
T 2fxq_A 149 GTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWASELRKGDGLLVIGRLVNDSW 206 (264)
T ss_dssp CCEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHTTCCTTCEEEEEEEEEEEEE
T ss_pred CCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhhhcCCCCEEEEEEEEEeeEE
Confidence 65544333322211 112699999999988553 56777777775 345556
No 41
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=92.51 E-value=0.36 Score=44.15 Aligned_cols=63 Identities=14% Similarity=0.259 Sum_probs=45.4
Q ss_pred ceeeEEEEEEEcccceeEEeecCCceeeEEEEEEeeccccEEEEEEecccccc----ccCCCCCEEEEEeEEEeecCCc
Q psy15132 575 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET----FDASNKPVIAVKAARVSEFQGN 649 (786)
Q Consensus 575 ~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~----~~~~~~~vv~i~~~~V~~f~G~ 649 (786)
..|.++|+|.++.+. .....+.|.|.||.+|.+..|.+.... -....|.+|.+.| +++.|+|+
T Consensus 32 ~~V~iVG~V~~~~~~-----------~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G-~l~~f~g~ 98 (132)
T 3kdf_D 32 SQVTIVGIIRHAEKA-----------PTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAG-HLRSFQNK 98 (132)
T ss_dssp CEEEEEEEEEEEEEC-----------SSEEEEEEECSSSSCEEEEEEC---------CCCCTTCEEEEEE-EEEEETTE
T ss_pred EEEEEEEEEEEEEEc-----------CCeEEEEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEEE-EEEeECCE
Confidence 468999999987431 245689999999988999999875422 1246788888877 58889986
No 42
>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila}
Probab=92.26 E-value=2.9 Score=33.70 Aligned_cols=85 Identities=18% Similarity=0.359 Sum_probs=63.5
Q ss_pred CCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCC--cEEEEEcchhHHHhhhhccCCcEEEEcceEEeccCCcc
Q psy15132 450 PYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG--EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKF 527 (786)
Q Consensus 450 p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G--~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~~a~~~y 527 (786)
....-.++.|.|+.. .. ..+-..+-+.|.+- +.++++|.++|-.|.+.+..++||++..|.-...
T Consensus 10 tskqylsvlaqvvdi------qs---sdknirlkicdnscnqelkvvifpdlcyewrdkfsinkwyyfnefvrqiy---- 76 (109)
T 3u4z_A 10 TSKQYLSVLAQVVDI------QS---SDKNIRLKICDNSCNQELKVVIFPDLCYEWRDKFSINKWYYFNEFVRQIY---- 76 (109)
T ss_dssp CCCSEEEEEEEEEEE------EC---CSSCEEEEEECSSCSSCEEEEECTTHHHHHTTTCCTTCEEEEEEEEEEES----
T ss_pred HHHHHHHHHHHHhhh------hc---CCCceEEEeecccccceeEEEEchhHHHHHHhhcchhhhhhHHHHHHHHh----
Confidence 344456788888842 11 23567888999884 6999999999999999999999999998854432
Q ss_pred cccCCceEEEEccccEEEEccCC
Q psy15132 528 SSINNDYEMSFTHSTTVIPCNED 550 (786)
Q Consensus 528 ~~~~~~yei~f~~~T~I~~~~d~ 550 (786)
+....+.-+-++.|.+.+|.
T Consensus 77 ---ndevqlknnihssikesddq 96 (109)
T 3u4z_A 77 ---NDEVQLKNNIHSSIKESDDQ 96 (109)
T ss_dssp ---SSCEEEECCTTCEEEECSSC
T ss_pred ---hhHHhHhhhhhhhhhccccc
Confidence 24456666678999887664
No 43
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=92.19 E-value=1.2 Score=42.12 Aligned_cols=86 Identities=15% Similarity=0.142 Sum_probs=58.3
Q ss_pred CceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccc---c--ccCCCCcEEEEEeEEEeeeCCc
Q psy15132 58 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE---T--FDASNKPVIAVKAARVSEFQGG 132 (786)
Q Consensus 58 ~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~---~--~~~~~~~Vi~i~~~kv~~f~g~ 132 (786)
..|+|+|+|.++.+ + -.+..++|=|.||..|+|.+|=+... . .....|.++-++| +|+.|+|.
T Consensus 48 ~~V~IvGiVv~~~~------~-----~~~~~ytIDD~TG~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G-~v~~fr~~ 115 (159)
T 3kf6_A 48 RWIQIVGYIAAIDI------Y-----EGKHVLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFG-KINSFRSE 115 (159)
T ss_dssp CEEEEEEEEEEEEE------E-----TTEEEEEEECSSSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEE-EEECSSSS
T ss_pred EEEEEEEEEEEEEE------e-----CCEEEEEEecCCCCeEEEEEEccCCCCcccccccCCCCCEEEEEE-EEEeeCCE
Confidence 46999999999752 1 13567888888898899999977621 1 1235688888887 68899999
Q ss_pred eeeeecceeEEEECCCchHHHHHHhhhh
Q psy15132 133 KTLSLSMSSVLSLNPDIPECHKLQGWFS 160 (786)
Q Consensus 133 ~~ls~~~~s~i~~npd~pe~~~l~~w~~ 160 (786)
+.|.+. ++..-.|.. .|++.|-.
T Consensus 116 rqI~~~---~i~~v~d~n--~Ev~~W~~ 138 (159)
T 3kf6_A 116 VELIAQ---SFEELRDPN--DEWKAWQK 138 (159)
T ss_dssp CEEEEE---EEEEECSTH--HHHHHHHH
T ss_pred EEEEEE---EEEECCCcH--HHHHHHHH
Confidence 988754 443333322 35555543
No 44
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=90.60 E-value=0.7 Score=45.32 Aligned_cols=98 Identities=16% Similarity=0.181 Sum_probs=62.3
Q ss_pred CCceeeecccC-----C--CCCceEEEEEEeecCCcceecCCCCCce-EEEEEEEc---CCCcEEEEEcchhHHHhhhhc
Q psy15132 439 VVQTHPIVSLS-----P--YQNKWTIKARVTNKTPIREWNNARGSGK-LFSIDLLD---ESGEIRATMFNDECNRFHDMI 507 (786)
Q Consensus 439 ~~~~~~I~~L~-----p--~~~~w~I~~RV~~k~~~r~~~~~~~~g~-~~~~~L~D---~~G~I~at~~~~~~~kf~~~l 507 (786)
..++.+|++|- | ...+|.+.|-|+.|++.|.-.+ |+ ..-+.|.| .+.++..-+|++..++++ .+
T Consensus 35 ~~k~~~l~~L~~~v~~~~~~e~dwv~~GVV~~Ks~pk~~~~----gk~y~~w~l~DL~~~~~~V~lfLFg~a~~~~~-k~ 109 (200)
T 3ebe_A 35 GRKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITPQSSNN----GKTFSIWRLNDLKDLDKYISLFLFGDVHKEHW-KT 109 (200)
T ss_dssp TCEECCGGGHHHHHHTTCSTTSCEEEEEEEEEEECC-----------CCEEEEEECSSSTTCCEEEEECHHHHHHHT-TC
T ss_pred CCeEEeHHHHHhhccCCCCCcCCEEEEEEEEecCCccCcCC----CCeEEEEEEEecCCCCcEEEEEEechHHHHhc-Cc
Confidence 34566776662 2 1359999999999999887433 33 23344544 445799999999998866 58
Q ss_pred cCCcEEEEcceEEeccCCcccccCCceEEEEccccEEE
Q psy15132 508 EKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVI 545 (786)
Q Consensus 508 ~~G~vy~is~~~V~~a~~~y~~~~~~yei~f~~~T~I~ 545 (786)
++|.|+-|-|..+.+.+.. .+.+-|.++....|.
T Consensus 110 ~~G~ViaiLNP~i~~~~~~----~~~~sLsv~~~~~Il 143 (200)
T 3ebe_A 110 DQGTVIGLLNANPMKPKEG----TDEVCLSVDNPQKVL 143 (200)
T ss_dssp CTTEEEEEESCEECCCCTT----CCCEEEECSSGGGEE
T ss_pred CCceEEEEECCEEccCCCC----CcceEEEECCcccEE
Confidence 9999999999987544322 234555554433333
No 45
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=90.06 E-value=1.1 Score=46.26 Aligned_cols=69 Identities=14% Similarity=0.245 Sum_probs=49.3
Q ss_pred CceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCCCEEEEEecccccc---cc-cCCCCcEEEEEeEEEeeeCCce
Q psy15132 58 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE---TF-DASNKPVIAVKAARVSEFQGGK 133 (786)
Q Consensus 58 ~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~---~~-~~~~~~Vi~i~~~kv~~f~g~~ 133 (786)
..|.++|+|+++.. +. ....++|.|.||.+|.+.+|.+... .. ....+.+|-+.| +|..|+|.+
T Consensus 72 ~~V~ivG~V~~i~~---------~~--~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G-~v~~f~g~~ 139 (270)
T 2pi2_A 72 SQVTIVGIIRHAEK---------AP--TNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAG-HLRSFQNKK 139 (270)
T ss_dssp SEEEEEEEEEEEEE---------CS--SEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEE-EEEEETTEE
T ss_pred EEEEEEEEEEEEEe---------cc--ceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEE-EEEecCCee
Confidence 36889999888732 11 3568999999987899999987543 11 235677887776 888999988
Q ss_pred eeeec
Q psy15132 134 TLSLS 138 (786)
Q Consensus 134 ~ls~~ 138 (786)
.|.+.
T Consensus 140 qi~i~ 144 (270)
T 2pi2_A 140 SLVAF 144 (270)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88754
No 46
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=89.54 E-value=0.81 Score=47.21 Aligned_cols=63 Identities=13% Similarity=0.254 Sum_probs=46.4
Q ss_pred ceeeEEEEEEEcccceeEEeecCCceeeEEEEEEeeccccEEEEEEeccccc----cccCCCCCEEEEEeEEEeecCCc
Q psy15132 575 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE----TFDASNKPVIAVKAARVSEFQGN 649 (786)
Q Consensus 575 ~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~----~~~~~~~~vv~i~~~~V~~f~G~ 649 (786)
..|+++|+|+++.. + .....++|.|.||.+|.+.+|.+... .-....+.+|.+.| +|+.|+|+
T Consensus 72 ~~V~ivG~V~~i~~---------~--~~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G-~v~~f~g~ 138 (270)
T 2pi2_A 72 SQVTIVGIIRHAEK---------A--PTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAG-HLRSFQNK 138 (270)
T ss_dssp SEEEEEEEEEEEEE---------C--SSEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEE-EEEEETTE
T ss_pred EEEEEEEEEEEEEe---------c--cceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEE-EEEecCCe
Confidence 35889999988632 1 24678999999997799999987532 12256788988876 88899997
No 47
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=88.98 E-value=0.52 Score=43.93 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=37.7
Q ss_pred eeeeEEEEecCCcEEEEeehHHHHHHhCCChhhhhccCCCh
Q psy15132 257 LILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH 297 (786)
Q Consensus 257 y~l~~~v~D~Tg~~~~~~F~~~a~~ilg~sa~el~~~~e~~ 297 (786)
|.|.+.|+|+|+.+.+.+=+++-+.++|.|+.|+.+++.++
T Consensus 60 W~l~a~IsDGS~~LdV~f~~~VLt~lIGfS~~E~~~lkkdp 100 (157)
T 3mxn_A 60 WSITAKVSDGTAYLDVDFVDEILTSLIGFSVPEMKQSKKDP 100 (157)
T ss_dssp CBCEEEEECSSCEEEEEECHHHHHHHHSCCHHHHHHHTTSH
T ss_pred EEEEEEEeCCceeEEEEeeHHHHHhhhCCCHHHHHHHhhCH
Confidence 77899999999999999999999999999999999987654
No 48
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=88.25 E-value=2.8 Score=48.57 Aligned_cols=128 Identities=16% Similarity=0.145 Sum_probs=88.6
Q ss_pred ccCCCcCCCCCeEEEEccCcEEEEccCCC----CCCCCceeEeecCccchhc---cCCCCceEEEEEEEEeccceeEeec
Q psy15132 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDE----VGNMPSVKYCFVPLKTIAE---ISPDENIDVLGVCIDAAELSSVTGK 78 (786)
Q Consensus 6 A~~~y~~~~~~yei~f~~~T~I~~~~d~~----~~~iP~~~~~f~~~~~i~~---~~~~~~vDViGvV~~v~~~~~i~~k 78 (786)
++.+.+.-...-+|+-...|.+.+.+..+ ..--|+. .++|++|.+ .....-+|++|+|..|+...
T Consensus 556 s~s~~~~~~~~lqLtAtk~T~~~~L~~~~~~~~~~~~pR~---~~~~~~l~~~~f~p~~~EvDivG~Vv~v~~~~----- 627 (738)
T 1miu_A 556 SKSKSKFERPSIQLTATKRTQYQQLPVSSETLLQVYQPRE---SLHFSRLSDPAFQPPCSEVDVVGVVVSVVKPI----- 627 (738)
T ss_dssp CCCCCSSSCCSCEEEEEEEEEEEEECCCHHHHTTTCCCCC---BCCSGGGGSSSCCTTTTEEEEEEEEEEEECCT-----
T ss_pred cCCCccCccceEEEeecccceeEECCcchhhhccccCCcc---eeeHHHhcCccccCCCCceeEEEEEEEEcccC-----
Confidence 33333333355789999999999986321 0112332 345667764 45678999999999996531
Q ss_pred cCCceeeEEEEEEEeCCCCEEEEEecccccccccCCCCcEEEEEeEEEeeeC--CceeeeecceeEEEECCC
Q psy15132 79 TNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQ--GGKTLSLSMSSVLSLNPD 148 (786)
Q Consensus 79 ~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~~~~~~Vi~i~~~kv~~f~--g~~~ls~~~~s~i~~npd 148 (786)
| ..--+.|.|.+..-+.+.+|+..+++ ...+.+||+.+....... |-..|-.+..|.+.-||-
T Consensus 628 --~---~~~~vylsD~~~nll~Ikf~~~l~eD--~~~~~~va~sNL~~r~~~~~~ip~~~a~~~t~fs~~pk 692 (738)
T 1miu_A 628 --G---LAPLVYLSDECLNLLVVKFGIDLNED--IKPRVLIAASNLQCQPESTSGVPTLFAGHFSIFSASPK 692 (738)
T ss_dssp --T---SCCEEEEECSSSCEEEEEESSCCCSC--CCSSCEEEEEEEECCSCCSSSCCCEEECTTCEEESSCC
T ss_pred --c---ccceEEEEcCCCcEEEEEEecCchhh--CccccEEEEeeeEeeccccccCceEEeccceEEecCcc
Confidence 2 12357899999889999999999977 788899999998664332 335566777888888884
No 49
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=88.01 E-value=0.47 Score=44.24 Aligned_cols=64 Identities=19% Similarity=0.356 Sum_probs=51.4
Q ss_pred CCceEEEEEEEEEEecCceEEeCCCCccccccccccCCceeeeCCCCCcCCceeEEEEEEEEEEecCCcEEEEEehhhHH
Q psy15132 666 KADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745 (786)
Q Consensus 666 ~~~~~~v~a~I~~i~~~~~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~i~D~Tg~~~~~~F~~~ae 745 (786)
.+..|.|+|.|+.+... +.. .+|.| .|.+.|+|+|+.+.+-+-+++-+
T Consensus 36 ~~~~~kVKafI~tl~~~---------------l~~-~~~~W----------------~l~a~IsDGS~~LdV~f~~~VLt 83 (157)
T 3mxn_A 36 EVTTVKVKAFIVTLTGN---------------LSS-SGGIW----------------SITAKVSDGTAYLDVDFVDEILT 83 (157)
T ss_dssp SCEEEEEEEEEEEECSC---------------CBC-GGGSC----------------BCEEEEECSSCEEEEEECHHHHH
T ss_pred CceEEEEEEEEEEeccc---------------eee-cCCEE----------------EEEEEEeCCceeEEEEeeHHHHH
Confidence 45679999999998542 221 12333 57899999999999999999999
Q ss_pred HHhCCChHHHhccccC
Q psy15132 746 SILGVTAQEVGESTED 761 (786)
Q Consensus 746 ~llG~sa~el~~~~~~ 761 (786)
.++|.|+.|+.+++.+
T Consensus 84 ~lIGfS~~E~~~lkkd 99 (157)
T 3mxn_A 84 SLIGFSVPEMKQSKKD 99 (157)
T ss_dssp HHHSCCHHHHHHHTTS
T ss_pred hhhCCCHHHHHHHhhC
Confidence 9999999999988754
No 50
>3rn5_A Interferon-inducible protein AIM2; OB fold, DNA binding, cytosolic, immune system-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 3rn2_A*
Probab=87.98 E-value=19 Score=34.48 Aligned_cols=164 Identities=13% Similarity=0.108 Sum_probs=114.0
Q ss_pred EEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEEeccCCcccccCCceE
Q psy15132 456 TIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYE 535 (786)
Q Consensus 456 ~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~~a~~~y~~~~~~ye 535 (786)
...|-|+.-.+.=.|..+.|..++|+-+++-++.-.++-+|+-.. .+.+..++++.||++.- +.--
T Consensus 14 P~~VmVLkaTepF~Ye~~E~~~~MFHATVATetqfF~VKVfn~~L---KeKF~pk~iI~ISdY~~-----------~~gf 79 (208)
T 3rn5_A 14 CLPVMVLKAKKPFTFETQEGKQEMFHATVATEKEFFFVKVFNTLL---KDKFIPKRIIIIARYYR-----------HSGF 79 (208)
T ss_dssp CEEEEEEEECCCEEEEETTEEEEEEEEEEECSSCEEEEEECCGGG---GGTCCTTCEEEEESBEE-----------CSSC
T ss_pred CeEEEEEeccCCeeeecccccceEEEEEEeeccceEEEEEecchh---hhhcCCCcEEEEEeccc-----------ccce
Confidence 456777777777788776655689999999999999999999754 67889999999999753 3346
Q ss_pred EEEccccEEEEccCCCCCCCCccee----eccCcccccccCCCceeeEEEEEEEcccceeEEeecCCceeeEEEEEEeec
Q psy15132 536 MSFTHSTTVIPCNEDEVGNMPSVKY----CFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ 611 (786)
Q Consensus 536 i~f~~~T~I~~~~d~~~~~iP~~~~----~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~ 611 (786)
|..++.|.|.++..+..-.+|.--. .--+|++|.....+.+|+=+=.|... +.+ + ...-..|.|+
T Consensus 80 LEi~~~SsVse~~~dq~~eVp~~ii~~A~~TPKI~~L~~q~~Gt~V~G~F~v~KK------~v~---~--~~~~YeI~Dn 148 (208)
T 3rn5_A 80 LEVNSASRVLDAESDQKVNVPLNIIRKAGETPKINTLQTQPLGTIVNGLFVVQKV------TEK---K--KNILFDLSDN 148 (208)
T ss_dssp EEECTTSEEEECCTTCCCCCCHHHHHHHHSCCCHHHHHTSCSSCEEEEEEEEEEE------EEC---S--SEEEEEEEET
T ss_pred EEEecccEEEEccCCceeecCHHHHHhcccCcchhhhhcCCCCCEEeEEEEEEEE------Eec---c--ceEEEEEecC
Confidence 7788889999986444225675421 12348888887778887643333321 111 1 2345788999
Q ss_pred cccEEEEEEeccccccccCCCCCEEEEEeEEEeec
Q psy15132 612 SQASVTMTLWGKEAETFDASNKPVIAVKAARVSEF 646 (786)
Q Consensus 612 s~~~i~~tLWg~~a~~~~~~~~~vv~i~~~~V~~f 646 (786)
|| .++|...|.... ....+|+-+.+.-..++..
T Consensus 149 TG-~MeVvv~G~~~~-i~CEeGDKLrL~cFeL~~~ 181 (208)
T 3rn5_A 149 TG-KMEVLGVRNEDT-MKCKEGDKVRLTFFTLSKN 181 (208)
T ss_dssp TE-EEEEEEECSTGG-GSCCTTCEEEEEEEEEEEC
T ss_pred CC-cEEEEEeccCcc-cccCCCCeeEEEEEEEecc
Confidence 99 799999998663 4567777665554455443
No 51
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=86.71 E-value=3 Score=40.77 Aligned_cols=63 Identities=5% Similarity=0.181 Sum_probs=49.1
Q ss_pred CCceEEEEEEeecCCcceecCCCCCceEEEEEEEcC-------CC-------c-EEEEEcchhHHHhhhhccCCcEEEEc
Q psy15132 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDE-------SG-------E-IRATMFNDECNRFHDMIEKDKVYYIS 516 (786)
Q Consensus 452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~-------~G-------~-I~at~~~~~~~kf~~~l~~G~vy~is 516 (786)
.++.+|.+||++.-++|...+ + ..+.+|.|+=. +| + |++++|+.+++.+...|+.|+.++|.
T Consensus 4 ~N~V~LiGrL~~DPElR~T~~--G-~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~L~KG~~V~Ve 80 (199)
T 3eiv_A 4 ETVITVVGNLVDDPELRFTPS--G-AAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQ 80 (199)
T ss_dssp CCEEEEEEEESSCCEEEECTT--C-CEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCEEEEE
T ss_pred ccEEEEEEEECCCCeEEECCC--C-CEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHhcCCCCEEEEE
Confidence 467899999999888887643 2 25667766421 12 2 99999999999999999999999998
Q ss_pred c
Q psy15132 517 N 517 (786)
Q Consensus 517 ~ 517 (786)
.
T Consensus 81 G 81 (199)
T 3eiv_A 81 G 81 (199)
T ss_dssp E
T ss_pred E
Confidence 6
No 52
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=86.51 E-value=2.3 Score=40.06 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=46.9
Q ss_pred ceeeEEEEEEEcccceeEEeecCCceeeEEEEEEeeccccEEEEEEeccccc-----cccCCCCCEEEEEeEEEeecCCc
Q psy15132 575 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAE-----TFDASNKPVIAVKAARVSEFQGN 649 (786)
Q Consensus 575 ~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~-----~~~~~~~~vv~i~~~~V~~f~G~ 649 (786)
..|+++|+|+++.+ + -.+..+.|-|.||..|+|.+|-+... ......|.+|.++| +|+.|+|.
T Consensus 48 ~~V~IvGiVv~~~~------~-----~~~~~ytIDD~TG~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G-~v~~fr~~ 115 (159)
T 3kf6_A 48 RWIQIVGYIAAIDI------Y-----EGKHVLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFG-KINSFRSE 115 (159)
T ss_dssp CEEEEEEEEEEEEE------E-----TTEEEEEEECSSSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEE-EEECSSSS
T ss_pred EEEEEEEEEEEEEE------e-----CCEEEEEEecCCCCeEEEEEEccCCCCcccccccCCCCCEEEEEE-EEEeeCCE
Confidence 46999999998752 1 13467888888898899999987621 12246788998887 68889885
No 53
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=86.49 E-value=3.4 Score=36.57 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=50.4
Q ss_pred CCCceEEEEEEeecCCcceecCCCCCceEEEEEEEc------CCC----c-EEEEEcchhHHHhhhhccCCcEEEEcce
Q psy15132 451 YQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD------ESG----E-IRATMFNDECNRFHDMIEKDKVYYISNC 518 (786)
Q Consensus 451 ~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D------~~G----~-I~at~~~~~~~kf~~~l~~G~vy~is~~ 518 (786)
.+++..|.|||.....+|...+ | ..+.+|.|+= +.| + |++++|+.+++.....|+.|+.+.+.+.
T Consensus 4 mmN~v~l~G~l~~dpe~r~t~~--G-~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~ 79 (116)
T 3vdy_A 4 MFNQVMLVGRLTKDPDLRYTSA--G-AAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGR 79 (116)
T ss_dssp CCCCEEEEEEESSCCEEEECTT--S-CEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred eEeEEEEEEEEccCcEEEECCC--C-CEEEEEEEEEeccccCCCCccccEEEEEEEECHHHHHHHHhCCCCCEEEEEEE
Confidence 4678999999998888886543 2 2566666532 234 2 9999999999999999999999999974
No 54
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=85.82 E-value=1.6 Score=37.98 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=51.0
Q ss_pred CCceEEEEEEeecCCcceecCCCCCceEEEEEEEc-----CCCc-------EEEEEcchhHHHhhhhccCCcEEEEcce
Q psy15132 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-----ESGE-------IRATMFNDECNRFHDMIEKDKVYYISNC 518 (786)
Q Consensus 452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D-----~~G~-------I~at~~~~~~~kf~~~l~~G~vy~is~~ 518 (786)
+++..+.||++.-.++|...+ | ..+.+|.|+= +.+- |++++|+..++.....|+.|+-+++.+.
T Consensus 2 ~N~v~L~G~l~~dpelR~t~~--G-~~v~~f~lA~~~~~~~~~~~r~~~~~~~vv~~g~~Ae~~~~~l~KG~~V~V~G~ 77 (104)
T 1txy_A 2 TNRLVLSGTVCRAPLRKVSPS--G-IPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGF 77 (104)
T ss_dssp CEEEEEEEEEEEEEEEEECTT--S-CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEEEEE
T ss_pred cEEEEEEEEECCCceEEECCC--C-CEEEEEEEEEeCccccCCceeceeEEEEEEEEhHHHHHHHhhCCCCCEEEEEEE
Confidence 467899999999988887643 2 2666776643 3355 9999999999999999999999999975
No 55
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=85.46 E-value=5.1 Score=35.09 Aligned_cols=65 Identities=8% Similarity=0.087 Sum_probs=51.3
Q ss_pred CCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCC------Cc-EEEEEcchhHHHhhhhccCCcEEEEcc
Q psy15132 451 YQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDES------GE-IRATMFNDECNRFHDMIEKDKVYYISN 517 (786)
Q Consensus 451 ~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~------G~-I~at~~~~~~~kf~~~l~~G~vy~is~ 517 (786)
.++...+.||+++--++|...+ |...+.+|.|+=.. -+ |++++|+.+++.....|+.|+-+.|.+
T Consensus 10 ~~~~v~LiGrL~~DPelR~t~~--g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~KG~~V~VeG 81 (108)
T 3koj_A 10 HMNSCILQATVVEAPQLRYAQD--NQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEG 81 (108)
T ss_dssp SCEEEEEEEEEEEEEEEEECTT--SSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEE
T ss_pred ccceEEEEEEECCCCEEEEeCC--CCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCCCCCEEEEEE
Confidence 4567899999999988887643 22367777765331 13 999999999999999999999999987
No 56
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=85.06 E-value=4 Score=37.22 Aligned_cols=64 Identities=20% Similarity=0.273 Sum_probs=49.6
Q ss_pred CCceEEEEEEeecCCcceecCCCCCceEEEEEEE------cCCC-------cEEEEEcchhHHHhhhhccCCcEEEEcce
Q psy15132 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------DESG-------EIRATMFNDECNRFHDMIEKDKVYYISNC 518 (786)
Q Consensus 452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D~~G-------~I~at~~~~~~~kf~~~l~~G~vy~is~~ 518 (786)
+++..|.+||..--.+|...+ | ..+.+|.|+ |+.| -|.+++|+.+++.....|+.|+.+.|.+.
T Consensus 2 mN~V~L~GrL~~dPelr~t~~--G-~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~ 78 (134)
T 2vw9_A 2 FNKVIMVGRLTRNVELKYLPS--G-SAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGR 78 (134)
T ss_dssp CCCEEEEEEESSCCEEEECTT--S-CEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred eeEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEeCCeECCCCCCccccEEEEEEEEcHHHHHHHHhCCCCCEEEEEEE
Confidence 467899999998888887643 2 256666553 4434 29999999999999999999999999974
No 57
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=84.78 E-value=5.7 Score=35.16 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=50.0
Q ss_pred CCceEEEEEEeecCCcceecCCCCCceEEEEEEEc-----CCCc-------EEEEEcchhHHHhhhhccCCcEEEEcceE
Q psy15132 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-----ESGE-------IRATMFNDECNRFHDMIEKDKVYYISNCT 519 (786)
Q Consensus 452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D-----~~G~-------I~at~~~~~~~kf~~~l~~G~vy~is~~~ 519 (786)
+++..+.||+++-.++|.-. .| ..+.+|.|+- +.|. |.+++|+..++.. ..|..|+-+.|+++-
T Consensus 1 MNkviL~GrL~~dPelRyTp--sG-~~V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~-~~l~kGs~V~VeGrL 76 (115)
T 3fhw_A 1 MNTLELSARVLECGAMRHTP--AG-LPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLL-ADTPLGTEMQVQGFL 76 (115)
T ss_dssp CEEEEEEEEEEEECCCEECT--TS-CEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHH-TTCCTTCEEEEEEEE
T ss_pred CCEEEEEEEECcCcceEECC--CC-CEEEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhh-hccCCCCEEEEEEEE
Confidence 46788999999999999543 23 2667777653 2342 9999999999887 889999999999864
Q ss_pred E
Q psy15132 520 L 520 (786)
Q Consensus 520 V 520 (786)
-
T Consensus 77 ~ 77 (115)
T 3fhw_A 77 A 77 (115)
T ss_dssp E
T ss_pred E
Confidence 3
No 58
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=84.24 E-value=4 Score=38.13 Aligned_cols=66 Identities=14% Similarity=0.216 Sum_probs=50.3
Q ss_pred CCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEE-c------CCC-----c-EEEEEcchhHHHhhhhccCCcEEEE
Q psy15132 449 SPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL-D------ESG-----E-IRATMFNDECNRFHDMIEKDKVYYI 515 (786)
Q Consensus 449 ~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~-D------~~G-----~-I~at~~~~~~~kf~~~l~~G~vy~i 515 (786)
-|..++..|.|||.+--.+|...+ | ..+.+|.|+ + ++| + |++++|+.+++.....|+.|+-+.|
T Consensus 13 ~~~~N~V~LiGrL~~DPelr~t~~--G-~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V 89 (153)
T 1z9f_A 13 MSFFNKIILIGRLVRDPEERYTLS--G-TPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFARTYLTKGRLVLV 89 (153)
T ss_dssp CSCCCCEEEEEEESSCCEEEECC-----CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHHHHCCTTCEEEE
T ss_pred ccceeEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHHHHHhhCCCCCEEEE
Confidence 456788999999998888887643 2 366677664 2 223 2 9999999999999999999999999
Q ss_pred cc
Q psy15132 516 SN 517 (786)
Q Consensus 516 s~ 517 (786)
.+
T Consensus 90 eG 91 (153)
T 1z9f_A 90 EG 91 (153)
T ss_dssp EE
T ss_pred EE
Confidence 97
No 59
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=84.07 E-value=3.3 Score=38.96 Aligned_cols=65 Identities=23% Similarity=0.329 Sum_probs=50.6
Q ss_pred CCCceEEEEEEeecCCcceecCCCCCceEEEEEE------EcC-CC------c-EEEEEcchhHHHhhhhccCCcEEEEc
Q psy15132 451 YQNKWTIKARVTNKTPIREWNNARGSGKLFSIDL------LDE-SG------E-IRATMFNDECNRFHDMIEKDKVYYIS 516 (786)
Q Consensus 451 ~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L------~D~-~G------~-I~at~~~~~~~kf~~~l~~G~vy~is 516 (786)
.+++..|.+||...-.+|...+ | ..+.+|.| .|+ +| + |++++|+.+++.+...|+.|+.++|.
T Consensus 7 ~mN~V~LiGrL~~dPelr~t~~--G-~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~l~KG~~V~Ve 83 (158)
T 3tqy_A 7 GVNKVILIGNLGQDPEVRYTPN--G-NAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEYLRKGSKIYIE 83 (158)
T ss_dssp CEEEEEEEEEESSSCEEEECTT--C-CEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHHCCTTCEEEEE
T ss_pred ccCEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhhcCCCCEEEEE
Confidence 4578999999999888887643 2 25555554 344 45 2 89999999999999999999999998
Q ss_pred ce
Q psy15132 517 NC 518 (786)
Q Consensus 517 ~~ 518 (786)
+.
T Consensus 84 G~ 85 (158)
T 3tqy_A 84 GS 85 (158)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 60
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}
Probab=83.03 E-value=9.9 Score=33.98 Aligned_cols=84 Identities=18% Similarity=0.352 Sum_probs=60.9
Q ss_pred CCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCC--cEEEEEcchhHHHhhhhccCCcEEEEcceEEeccCCc
Q psy15132 449 SPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG--EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKK 526 (786)
Q Consensus 449 ~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G--~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~~a~~~ 526 (786)
.....-..+.|.|+.. . . ..+-+.+-+.|.+- +.++++|.++|-.|.+.+..++||++..|.-...+
T Consensus 127 ktskqylsvlaqvvdi---q---s---sdknirlkicdnscnqelkvvifpdlcyewrdkfsinkwyyfnefvrqiyn-- 195 (213)
T 3u58_A 127 KTSKQYLSVLAQVVDI---Q---S---SDKNIRLKICDNSCNQELKVVIFPDLCYEWRDKFSINKWYYFNEFVRQIYN-- 195 (213)
T ss_dssp TCCCSEEEEEEEEEEE---E---E---CSSCEEEEEECTTCSCCEEEEECTTTTGGGTTCCCTTCEEEEEEEEECCSS--
T ss_pred HHhHHHHHHHHHhhcc---c---c---CCCceEEEeecccccceeEEEEchhHhhHhhhhcchhhhhhHHHHHHHHhh--
Confidence 3444556888988842 1 1 13557888999884 79999999999999999999999999988543322
Q ss_pred ccccCCceEEEEccccEEEEcc
Q psy15132 527 FSSINNDYEMSFTHSTTVIPCN 548 (786)
Q Consensus 527 y~~~~~~yei~f~~~T~I~~~~ 548 (786)
....+.-+-++.|.+.+
T Consensus 196 -----devqlknnihssikesd 212 (213)
T 3u58_A 196 -----DEVQLKNNIHSSIKESD 212 (213)
T ss_dssp -----SSCEEECCTTCEEEECC
T ss_pred -----hhhhhhhhhhhhhcccC
Confidence 34455555677777653
No 61
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=82.98 E-value=6.7 Score=44.38 Aligned_cols=99 Identities=20% Similarity=0.208 Sum_probs=70.5
Q ss_pred CceeeecccCCC--CCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcch-----hHHHhhhhccCCcE
Q psy15132 440 VQTHPIVSLSPY--QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFND-----ECNRFHDMIEKDKV 512 (786)
Q Consensus 440 ~~~~~I~~L~p~--~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~-----~~~kf~~~l~~G~v 512 (786)
...+.|.+|.+. ...++|+|||.++ |. .|++.=++|.|.+|.|++++-.+ ..-++...|..|++
T Consensus 48 ~~~~~i~~l~~~~~g~~V~v~Gwv~~~---R~------~gkl~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~~l~~es~ 118 (548)
T 3i7f_A 48 LKYTEIEELVPAMAEKTVTIRARVQAV---RG------KGNMVFLFLRKGIYTCQALVMKSETISKEFVQFCQKISAESI 118 (548)
T ss_dssp CCBCCGGGCSGGGTTCEEEEEEEEEEE---EE------CSSEEEEEEEETTEEEEEEEECSSSSCHHHHHHHHTCCTTEE
T ss_pred CceEEhhhcchhcCCCEEEEEEEEEEE---ec------CCCeEEEEEEECCeeEEEEEECCCccCHHHHHHHhCCCCCCE
Confidence 456788888743 3568999999853 33 36788889999999999998641 23345667999999
Q ss_pred EEEcceEEeccCCcccccCCceEEEEccccEEEEc
Q psy15132 513 YYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPC 547 (786)
Q Consensus 513 y~is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~ 547 (786)
+.+.+.-++...+.-+.....+||....-..+..+
T Consensus 119 V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a 153 (548)
T 3i7f_A 119 CDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLA 153 (548)
T ss_dssp EEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECC
T ss_pred EEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecC
Confidence 99997655443222223357899999876666655
No 62
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=82.11 E-value=7.4 Score=36.89 Aligned_cols=63 Identities=14% Similarity=0.317 Sum_probs=49.2
Q ss_pred CCceEEEEEEeecCCcceecCCCCCceEEEEEEE------cC-CC-------c-EEEEEcchhHHHhhhhccCCcEEEEc
Q psy15132 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------DE-SG-------E-IRATMFNDECNRFHDMIEKDKVYYIS 516 (786)
Q Consensus 452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D~-~G-------~-I~at~~~~~~~kf~~~l~~G~vy~is 516 (786)
.++..|.+||++--.+|...+ | ..+.+|.|+ |. +| + |++++|+.+++.....|+.|+.++|.
T Consensus 4 ~N~V~LiG~L~~dPelr~t~~--G-~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~Ve 80 (168)
T 3afp_A 4 DTTITIVGNLTADPELRFTSS--G-AAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVT 80 (168)
T ss_dssp CCEEEEEEEESSSCCCEECTT--S-CEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEE
T ss_pred cCEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEE
Confidence 577899999999888887643 2 366677665 21 12 2 99999999999999999999999999
Q ss_pred c
Q psy15132 517 N 517 (786)
Q Consensus 517 ~ 517 (786)
+
T Consensus 81 G 81 (168)
T 3afp_A 81 G 81 (168)
T ss_dssp E
T ss_pred E
Confidence 6
No 63
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=81.31 E-value=8.1 Score=33.44 Aligned_cols=62 Identities=19% Similarity=0.208 Sum_probs=48.6
Q ss_pred CceEEEEEEeecCCcceecCCCCCceEEEEEEEc-----CCC------c-EEEEEcchhHHHhhhhccCCcEEEEcceE
Q psy15132 453 NKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-----ESG------E-IRATMFNDECNRFHDMIEKDKVYYISNCT 519 (786)
Q Consensus 453 ~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D-----~~G------~-I~at~~~~~~~kf~~~l~~G~vy~is~~~ 519 (786)
++..+.||+++-.++|...+ | ..+.+|.|+= +.| . |++++|+.+++ ... |+.|+-++|.+.-
T Consensus 8 Nkv~LiG~L~~dPelRytp~--G-~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae-~~~-l~KG~~v~veGrL 81 (103)
T 3k8a_A 8 NLVSLAALIEKAFPIRYTPA--G-IPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAE-EWQ-YRQGDCATVEGFL 81 (103)
T ss_dssp EEEEEEEEEEEECCCEECTT--S-CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH-HST-TCTTCEEEEEEEE
T ss_pred cEEEEEEEECCCCceEECCC--C-CEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh-hhc-cCCCCEEEEEEEE
Confidence 78999999999999997643 2 3677776652 344 2 89999999999 555 9999999999863
No 64
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=80.63 E-value=6.9 Score=43.76 Aligned_cols=98 Identities=15% Similarity=0.194 Sum_probs=65.1
Q ss_pred ceeeecccCCC---CCceEEEEEEeecCCcceecCCCCCceE-EEEEEEcCCCcEEEEEcch-------hHHHhhhhccC
Q psy15132 441 QTHPIVSLSPY---QNKWTIKARVTNKTPIREWNNARGSGKL-FSIDLLDESGEIRATMFND-------ECNRFHDMIEK 509 (786)
Q Consensus 441 ~~~~I~~L~p~---~~~w~I~~RV~~k~~~r~~~~~~~~g~~-~~~~L~D~~G~I~at~~~~-------~~~kf~~~l~~ 509 (786)
+.+.|.+|... ....+|.|||.++ |. .|++ .=++|.|.+|.|++++-.+ ..-++...|..
T Consensus 22 ~~~~~~~l~~~~~~g~~V~v~GwV~~~---R~------~g~~l~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~~~~l~~ 92 (487)
T 1eov_A 22 KRVKFVDLDEAKDSDKEVLFRARVHNT---RQ------QGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNL 92 (487)
T ss_dssp CCCCGGGCCTTTTTTCEEEEEEEEEEE---EE------CSSSEEEEEEEETTEEEEEEEECCSSSSSCHHHHHHHTTCCT
T ss_pred ceeEHHHhcccccCCCEEEEEEEEEEe---ec------cCCccEEEEEEECCccEEEEEeccccccccHHHHHHHhcCCC
Confidence 34567777643 3468999999953 43 2565 6678999999999998532 22234467999
Q ss_pred CcEEEEcceEEeccCCcccccCCceEEEEccccEEEEc
Q psy15132 510 DKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPC 547 (786)
Q Consensus 510 G~vy~is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~ 547 (786)
|+++.+.+.-++...+.-+.....+||...+-..+..+
T Consensus 93 e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a 130 (487)
T 1eov_A 93 ESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISET 130 (487)
T ss_dssp TCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECC
T ss_pred CCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecc
Confidence 99999998655443221112236789988876666555
No 65
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=80.34 E-value=7.5 Score=34.76 Aligned_cols=64 Identities=20% Similarity=0.376 Sum_probs=49.4
Q ss_pred CCceEEEEEEeecCCcceecCCCCCceEEEEEEE------cC-CC------c-EEEEEcc-hhHHHhhhhccCCcEEEEc
Q psy15132 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------DE-SG------E-IRATMFN-DECNRFHDMIEKDKVYYIS 516 (786)
Q Consensus 452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D~-~G------~-I~at~~~-~~~~kf~~~l~~G~vy~is 516 (786)
.++..|.||+..--.+|...+ | ..+.+|.|+ |. +| + +++++|+ .+++.+...|+.|+.+.+.
T Consensus 6 ~N~v~l~Grl~~dpelr~t~~--G-~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae~~~~~l~KG~~V~V~ 82 (124)
T 3ulp_A 6 LNKIMLIGRVGCEPDIKILNG--G-DKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRRVYVQ 82 (124)
T ss_dssp EEEEEEEEEECSCCEEEECTT--S-CEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEE
T ss_pred ceEEEEEEEECCCcEEEECCC--C-CEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHHHHHhhcCCCCEEEEE
Confidence 467899999998888887643 2 256666553 32 24 2 9999999 7999999999999999998
Q ss_pred ce
Q psy15132 517 NC 518 (786)
Q Consensus 517 ~~ 518 (786)
+-
T Consensus 83 G~ 84 (124)
T 3ulp_A 83 GS 84 (124)
T ss_dssp EE
T ss_pred EE
Confidence 73
No 66
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=79.85 E-value=3 Score=40.81 Aligned_cols=80 Identities=20% Similarity=0.249 Sum_probs=54.0
Q ss_pred EeecCccchhc-cCCC----CceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCC--CEEEEEeccccccccc-CC
Q psy15132 43 YCFVPLKTIAE-ISPD----ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ--ASVTMTLWGKEAETFD-AS 114 (786)
Q Consensus 43 ~~f~~~~~i~~-~~~~----~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~--~~i~~tLWg~~a~~~~-~~ 114 (786)
..|++|.+|.. +..+ ...=++|+|.+.+++++- + +|+... -..|.|..+ .+|.+-|+|+...++. ..
T Consensus 36 ~k~~~l~~L~~~v~~~~~~e~dwv~~GVV~~Ks~pk~~--~-~gk~y~--~w~l~DL~~~~~~V~lfLFg~a~~~~~k~~ 110 (200)
T 3ebe_A 36 RKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITPQSS--N-NGKTFS--IWRLNDLKDLDKYISLFLFGDVHKEHWKTD 110 (200)
T ss_dssp CEECCGGGHHHHHHTTCSTTSCEEEEEEEEEEECC----------CCE--EEEEECSSSTTCCEEEEECHHHHHHHTTCC
T ss_pred CeEEeHHHHHhhccCCCCCcCCEEEEEEEEecCCccCc--C-CCCeEE--EEEEEecCCCCcEEEEEEechHHHHhcCcC
Confidence 57889999964 2221 233478999999888652 2 365543 356777666 5799999999888764 58
Q ss_pred CCcEEEEEeEEEe
Q psy15132 115 NKPVIAVKAARVS 127 (786)
Q Consensus 115 ~~~Vi~i~~~kv~ 127 (786)
.|.||||-+..+-
T Consensus 111 ~G~ViaiLNP~i~ 123 (200)
T 3ebe_A 111 QGTVIGLLNANPM 123 (200)
T ss_dssp TTEEEEEESCEEC
T ss_pred CceEEEEECCEEc
Confidence 8999999988763
No 67
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=78.71 E-value=59 Score=32.86 Aligned_cols=167 Identities=15% Similarity=0.195 Sum_probs=92.0
Q ss_pred CCceEEEEEEeecCCcceecCCCCCceEEEEEEEcC---CC----c-EEEEEcc-hhHHHhhhhccCCcEEEEcceEEec
Q psy15132 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDE---SG----E-IRATMFN-DECNRFHDMIEKDKVYYISNCTLKP 522 (786)
Q Consensus 452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~---~G----~-I~at~~~-~~~~kf~~~l~~G~vy~is~~~V~~ 522 (786)
.++..+.||+++- ++|.-.+ |.--+|+|.+.=. .| + |.+++|+ ..++...+.|+.|+-+.|.+ +++.
T Consensus 30 ~N~viLiGrLtrd-ElRyT~~--g~~a~~~lav~~~~~~~ge~~~df~~vv~wg~k~AE~~~~yl~kG~~V~VeG-rL~~ 105 (257)
T 4dni_A 30 VNHCVMLGVVQNI-QEGFVFE--DKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTG-RLRM 105 (257)
T ss_dssp SEEEEEEEEEEEE-EEEEETT--EEEEEEEEEEECCCCCSSCCCEEEEEEEECSHHHHHHHHHHCCTTCEEEEEE-EEEE
T ss_pred CcEEEEEEEEece-EEEECCC--CCEEEEEEEEEecCCCCCCCcccEEEEEEECCHHHHHHHHhccCCCEEEEEE-EEEE
Confidence 4678999999999 9987642 2124566654322 23 3 6777999 89999999999999998886 3333
Q ss_pred cCCcccccCCceEEEEcc----ccEEEEccCCCCCCCCcceeeccCcccccc---cCCCceeeEEEEEEEcccceeEEee
Q psy15132 523 ANKKFSSINNDYEMSFTH----STTVIPCNEDEVGNMPSVKYCFVPLKTIAE---ISPDENIDVLGVCIDAAELSSVTGK 595 (786)
Q Consensus 523 a~~~y~~~~~~yei~f~~----~T~I~~~~d~~~~~iP~~~~~f~~i~dl~~---~~~~~~vDViGvV~~V~~~~~i~~k 595 (786)
...+=......+|+.+.. ...+..+.+ ... +..-..|-++|.+ . +++.-.+
T Consensus 106 ~~~~dG~kr~~~evva~~v~~~~G~~~~v~~------------------~~g~~~M~~lNkV~LiGrL-~--DPElR~t- 163 (257)
T 4dni_A 106 VPQYDGSMRKYYHYPVIQVHPGCGSVLKVKL------------------ASGAGHMKSVNSVTLVGVV-H--DIQSGFV- 163 (257)
T ss_dssp EEEECSSSSSEEEEEEEEECTTTCEEEEGGG------------------SCSSCTTSCEEEEEEEEEE-E--EEEEEEE-
T ss_pred eECCCCCcEEEEEEEEEEEEecCCcceeeec------------------ccccccccccCEEEEEEEc-C--CCEEEEe-
Confidence 211111113445665553 111211111 111 1111247788888 2 2221111
Q ss_pred cCCceeeEEEEEE----eecc-------ccEEEEEEeccc--ccccc--CCCCCEEEEEe-EEEeec
Q psy15132 596 TNQKTYMKRDITL----VDQS-------QASVTMTLWGKE--AETFD--ASNKPVIAVKA-ARVSEF 646 (786)
Q Consensus 596 ~~g~~~~kr~i~l----~D~s-------~~~i~~tLWg~~--a~~~~--~~~~~vv~i~~-~~V~~f 646 (786)
. |+.+..-.|-. .|.. -.-++|++||+. |+ +. ...|.-|.+.| .+.+.|
T Consensus 164 ~-G~~Va~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AE-i~~~L~KG~~V~VeGrL~tr~~ 228 (257)
T 4dni_A 164 Y-EDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAE-VKQKVKEGNVVCVNGRLRLSPQ 228 (257)
T ss_dssp T-TEEEEEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHH-HHHHCCTTCEEEEEEEEEEEEE
T ss_pred C-CcEEEEEEEEECCCccCCCCceEccceEEEEEEEECCccHHH-HHhhCCCCCEEEEEEEEEeeeE
Confidence 2 54443322221 1211 125899999998 87 43 56777776665 344445
No 68
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=77.45 E-value=9.6 Score=32.86 Aligned_cols=64 Identities=16% Similarity=0.060 Sum_probs=48.7
Q ss_pred CCceEEEEEEeecCCcceecCCCCCceEEEEEEEc-----CCC------c-EEEEEcchhHHHhhhhccCCcEEEEcceE
Q psy15132 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-----ESG------E-IRATMFNDECNRFHDMIEKDKVYYISNCT 519 (786)
Q Consensus 452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D-----~~G------~-I~at~~~~~~~kf~~~l~~G~vy~is~~~ 519 (786)
+++..+.||+++-.++|.-. .| ..+.+|.|+- +.| . |.+++|+..++.... +..|+-+.|+++-
T Consensus 2 MN~v~L~GrLt~dPelRyTp--sG-~~V~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~-~~kGs~V~VeGrL 77 (101)
T 3en2_A 2 INRLQLVATLVEREVMRYTP--AG-VPIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDR-IAPGTVLECVGFL 77 (101)
T ss_dssp CCCEEEEEEEEEECCCEECT--TC-CEEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTT-SCTTCEEEEEEEE
T ss_pred cCEEEEEEEECcCccEEECC--CC-CEEEEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhh-cCCCCEEEEEEEE
Confidence 57899999999999988643 23 2566776643 233 2 999999999988775 7899999999874
No 69
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=76.08 E-value=5.6 Score=36.23 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=50.7
Q ss_pred CceEEEEEEeecCCcceecCCCCCceEEEEEEE-----cCCC------c-EEEEEcchhHHHhhhhccCCcEEEEcce
Q psy15132 453 NKWTIKARVTNKTPIREWNNARGSGKLFSIDLL-----DESG------E-IRATMFNDECNRFHDMIEKDKVYYISNC 518 (786)
Q Consensus 453 ~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~-----D~~G------~-I~at~~~~~~~kf~~~l~~G~vy~is~~ 518 (786)
++..+.||+++-.++|...+ | ..+.+|.|+ ++.| . |++++|+..++...+.|+.|+-++|.+.
T Consensus 20 NkViLiGrL~~DPElRyTps--G-~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~yl~KGs~V~VeGr 94 (134)
T 1v1q_A 20 NRLVLSGTVCRAPLRKVSPS--G-IPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGF 94 (134)
T ss_dssp EEEEEEEEEEEEEEEEECTT--C-CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEEE
T ss_pred eEEEEEEEECcCCceEECCC--C-CEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHhcCCCCEEEEEEE
Confidence 78999999999999887643 2 366666664 3345 2 9999999999999999999999999975
No 70
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=75.93 E-value=7.6 Score=35.76 Aligned_cols=47 Identities=13% Similarity=0.165 Sum_probs=38.2
Q ss_pred cEEEEEcchhHHHhhhhccCCcEEEEcceEEeccCCcccccCCceEEEEcccc
Q psy15132 490 EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHST 542 (786)
Q Consensus 490 ~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~~a~~~y~~~~~~yei~f~~~T 542 (786)
+|++++|.+.+.--.+.|++|+++.|.|.+++.... ...|-.+..++
T Consensus 66 tlqVtlwd~ha~~ar~~lk~Gd~v~L~Nv~iK~~~~------g~LEG~l~~dr 112 (143)
T 4hik_A 66 SIRCILWDEHDFYCRNYIKEGDYVVMKNVRTKIDHL------GYLECILHGDS 112 (143)
T ss_dssp CEEEEECHHHHHHHTTTCCTTCEEEEEEEEEEECTT------SCEEEEECCCT
T ss_pred EEEEEEECcHHHHHHhhCCCCCEEEEEeEEEeecCC------ceEEEEEcCCC
Confidence 599999999987777889999999999999988642 35666666554
No 71
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=75.11 E-value=5.8 Score=36.62 Aligned_cols=64 Identities=23% Similarity=0.363 Sum_probs=50.1
Q ss_pred CCceEEEEEEeecCCcceecCCCCCceEEEEEEEc------C-CC------c-EEEEEcchhHHHhhhhccCCcEEEEcc
Q psy15132 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD------E-SG------E-IRATMFNDECNRFHDMIEKDKVYYISN 517 (786)
Q Consensus 452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D------~-~G------~-I~at~~~~~~~kf~~~l~~G~vy~is~ 517 (786)
+++..|.+||..--.+|...+ | ..+.+|.|+= + +| + |++++|+.+++.+...|+.|+.+.|.+
T Consensus 5 mN~v~L~GrL~~dPelr~t~~--G-~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G 81 (145)
T 1qvc_A 5 VNKVILVGNLGQDPEVRYMPN--G-GAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEG 81 (145)
T ss_dssp EEEEEEEEEESSCCEEECCSS--S-CCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEE
T ss_pred eEEEEEEEEeCCCCEEEECCC--C-CEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhcCCCCEEEEEE
Confidence 467899999998888887643 2 3677777642 2 13 2 999999999999999999999999997
Q ss_pred e
Q psy15132 518 C 518 (786)
Q Consensus 518 ~ 518 (786)
.
T Consensus 82 ~ 82 (145)
T 1qvc_A 82 Q 82 (145)
T ss_dssp E
T ss_pred E
Confidence 4
No 72
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=74.36 E-value=5.3 Score=36.08 Aligned_cols=62 Identities=10% Similarity=0.069 Sum_probs=49.6
Q ss_pred CCceEEEEEEeecCCcceecCCCCCceEEEEEEE------cC-CC-------c-EEEEEcchhHHHhhhhccCCcEEEEc
Q psy15132 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------DE-SG-------E-IRATMFNDECNRFHDMIEKDKVYYIS 516 (786)
Q Consensus 452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D~-~G-------~-I~at~~~~~~~kf~~~l~~G~vy~is 516 (786)
.++..|.+|+..-..+|...+ |.+.+|.|+ |. +| + +++++|+.+++.....|+.|+-+.|.
T Consensus 15 ~N~V~LiGrL~~dPelr~t~~----G~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae~~~~~l~KG~~V~Ve 90 (128)
T 4dam_A 15 EIMICAVGNVATTPVFRDLAN----GPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQ 90 (128)
T ss_dssp CCEEEEEEEECSCCEEEEETT----EEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEE
T ss_pred eeEEEEEEEECCCCEEEEcCC----CCEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHHHHHHhcCCCCEEEEE
Confidence 367899999999888887643 367677664 32 23 3 99999999999999999999999998
Q ss_pred c
Q psy15132 517 N 517 (786)
Q Consensus 517 ~ 517 (786)
+
T Consensus 91 G 91 (128)
T 4dam_A 91 G 91 (128)
T ss_dssp E
T ss_pred E
Confidence 7
No 73
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=74.15 E-value=3.4 Score=39.65 Aligned_cols=64 Identities=25% Similarity=0.386 Sum_probs=49.6
Q ss_pred CCceEEEEEEeecCCcceecCCCCCceEEEEEEE------cCC-C------c-EEEEEcchhHHHhhhhccCCcEEEEcc
Q psy15132 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------DES-G------E-IRATMFNDECNRFHDMIEKDKVYYISN 517 (786)
Q Consensus 452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D~~-G------~-I~at~~~~~~~kf~~~l~~G~vy~is~ 517 (786)
.++..|.+||+..-.+|...+ | ..+.+|.|+ |.. | + |++++|+.+++.....|+.|+.++|.+
T Consensus 6 ~N~V~LiGrL~~dPelr~t~~--G-~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeG 82 (178)
T 1eqq_A 6 VNKVILVGNLGQDPEVRYMPN--G-GAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEG 82 (178)
T ss_dssp EEEEEEEEEESSSCCCCEETT--T-EECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHHHHHHCCTTCEEEECC
T ss_pred eeEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHHHHHHHHhcCCCCEEEEEE
Confidence 467899999999888887753 2 245555543 322 4 2 899999999999999999999999997
Q ss_pred e
Q psy15132 518 C 518 (786)
Q Consensus 518 ~ 518 (786)
.
T Consensus 83 r 83 (178)
T 1eqq_A 83 Q 83 (178)
T ss_dssp E
T ss_pred E
Confidence 4
No 74
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=73.63 E-value=12 Score=41.32 Aligned_cols=98 Identities=17% Similarity=0.134 Sum_probs=65.3
Q ss_pred ceeeecccCCCC-CceEEEEEEeecCCcceecCCCCCc-eEEEEEEEcCCCcEEEEEcchhHHHhh--hhccCCcEEEEc
Q psy15132 441 QTHPIVSLSPYQ-NKWTIKARVTNKTPIREWNNARGSG-KLFSIDLLDESGEIRATMFNDECNRFH--DMIEKDKVYYIS 516 (786)
Q Consensus 441 ~~~~I~~L~p~~-~~w~I~~RV~~k~~~r~~~~~~~~g-~~~~~~L~D~~G~I~at~~~~~~~kf~--~~l~~G~vy~is 516 (786)
..+.|++|.... ...+|.|||.++ |. .| ++.=++|.|.+|.|++++-.+....++ ..|..|+++.+.
T Consensus 18 ~~~~i~~~~~~~g~~V~v~Gwv~~~---R~------~Gk~~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~l~~g~~V~V~ 88 (456)
T 3m4p_A 18 IVCNIRDAAGLEGKLVTFKGWAYHI---RK------ARKTLIFVELRDGSGYCQCVIFGKELCEPEKVKLLTRECSLEIT 88 (456)
T ss_dssp CCEECCSTTCCCSSEEEEEEEEEEE---EC------CSSSEEEEEEECSSCEEEEEEESTTTTCHHHHTTCCTTCEEEEE
T ss_pred eEEEhhhhhhcCCCEEEEEEEEEEE---ec------CCCceEEEEEEeCCccEEEEEecccchhhHHhhcCCCccEEEEE
Confidence 446788886543 468999999853 32 34 577789999999999998763222222 358999999999
Q ss_pred ceEEeccCCcccc---cCCceEEEEccccEEEEc
Q psy15132 517 NCTLKPANKKFSS---INNDYEMSFTHSTTVIPC 547 (786)
Q Consensus 517 ~~~V~~a~~~y~~---~~~~yei~f~~~T~I~~~ 547 (786)
+--++...+.-++ +...+||...+-..+..+
T Consensus 89 G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a 122 (456)
T 3m4p_A 89 GRLNAYAGKNHPPEIADILNLEMQVTEWKVIGES 122 (456)
T ss_dssp EEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECC
T ss_pred eEEEecCCcccCcccCCCCcEEEEEeEEEEEecC
Confidence 7554332222111 227899998877666655
No 75
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=73.23 E-value=1.4 Score=35.57 Aligned_cols=31 Identities=23% Similarity=0.627 Sum_probs=24.1
Q ss_pred CCCCCCCCc-ceeeCCCceeecccCCCcCCceeE
Q psy15132 223 ACPSQDCNK-KVIDQNNGMYRCEKCNKEFNTFTY 255 (786)
Q Consensus 223 aC~~~~C~k-Kv~~~~~~~~~C~~C~~~~~~~~~ 255 (786)
-|| .|.| +|.....|.|.|.+|++.+.--.|
T Consensus 29 ~C~--fCgk~~vkR~a~GIW~C~~C~~~~AGGAy 60 (73)
T 1ffk_W 29 KCP--VCGFPKLKRASTSIWVCGHCGYKIAGGAY 60 (73)
T ss_pred cCC--CCCCceeEEEEeEEEECCCCCcEEECCCc
Confidence 689 8998 677667889999999987644333
No 76
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=73.08 E-value=12 Score=35.50 Aligned_cols=64 Identities=14% Similarity=0.210 Sum_probs=48.1
Q ss_pred CCceEEEEEEeecCCcceecCCCCCceEEEEEEE------cCC-C------c-EEEEEcch-hHHHhhhhccCCcEEEEc
Q psy15132 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------DES-G------E-IRATMFND-ECNRFHDMIEKDKVYYIS 516 (786)
Q Consensus 452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D~~-G------~-I~at~~~~-~~~kf~~~l~~G~vy~is 516 (786)
+++..|.|||...-.+|...+ | ..+.+|.|+ |+. | + |++++|+. +++.+...|+.|+.++|.
T Consensus 23 mNkV~LiGrL~~DPelr~t~~--G-~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~~~~~l~KG~~V~Ve 99 (169)
T 3lgj_A 23 LNKVMLIGYLGDDPESKTMTS--G-AEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVYIE 99 (169)
T ss_dssp EEEEEEEEEESSCCEEEECTT--S-CEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEEE
T ss_pred eeEEEEEEEECCCCeEEECCC--C-CEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHHHHHhCCCCCEEEEE
Confidence 468899999999888887643 2 256666543 221 4 3 99999999 999999999999999998
Q ss_pred ce
Q psy15132 517 NC 518 (786)
Q Consensus 517 ~~ 518 (786)
+-
T Consensus 100 Gr 101 (169)
T 3lgj_A 100 GK 101 (169)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 77
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=72.65 E-value=9.5 Score=36.95 Aligned_cols=63 Identities=21% Similarity=0.364 Sum_probs=47.8
Q ss_pred CCceEEEEEEeecCCcceecCCCCCceEEEEEEE------cC-CC------c-EEEEEcch-hHHHhhhhccCCcEEEEc
Q psy15132 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------DE-SG------E-IRATMFND-ECNRFHDMIEKDKVYYIS 516 (786)
Q Consensus 452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D~-~G------~-I~at~~~~-~~~kf~~~l~~G~vy~is 516 (786)
+++..|.+||..--.+|...+ + ..+.+|.|+ |. +| + |++++|++ +++.....|+.|+.++|.
T Consensus 26 mNkV~LiGrLg~DPElR~t~~--G-~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~~~~yL~KGs~V~Ve 102 (193)
T 3pgz_A 26 LNKVILIGNLGADPEIRRLNS--G-DQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVEQYLKKGSKIYIE 102 (193)
T ss_dssp EEEEEEEEEESSCCEEEECTT--S-CEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEE
T ss_pred cCEEEEEEEECCCCeEEECCC--C-CEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHHHHhhcCCCCEEEEE
Confidence 478899999999888887643 2 256666654 22 24 2 99999996 888888889999999998
Q ss_pred c
Q psy15132 517 N 517 (786)
Q Consensus 517 ~ 517 (786)
.
T Consensus 103 G 103 (193)
T 3pgz_A 103 G 103 (193)
T ss_dssp E
T ss_pred E
Confidence 6
No 78
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=72.18 E-value=12 Score=33.89 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=47.7
Q ss_pred CCCceEEEEEEeecCCcceecCCCCCceEEEEEEE------c------CCC------c-EEEEEcch-hHHHhhhhccCC
Q psy15132 451 YQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------D------ESG------E-IRATMFND-ECNRFHDMIEKD 510 (786)
Q Consensus 451 ~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D------~~G------~-I~at~~~~-~~~kf~~~l~~G 510 (786)
.+++..|.||+..-..+|...+ | ..+.+|.|+ | ++| . +++++|++ +++.....|+.|
T Consensus 13 ~mN~V~L~GrL~~dPelr~t~~--G-~~v~~f~lA~~~~~~~~~g~~~~~g~~~~~t~w~~v~~wg~~~Ae~~~~~l~KG 89 (132)
T 3ull_A 13 SLNRVHLLGRVGQDPVLRQVEG--K-NPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKG 89 (132)
T ss_dssp CEEEEEEEEEECSCCEEECCTT--S-CCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTT
T ss_pred cCcEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEecceeccccccccCCceecceEEEEEEEEchHHHHHHHhhCCCC
Confidence 3578899999999888887643 2 255555543 2 223 2 89999995 999999999999
Q ss_pred cEEEEcce
Q psy15132 511 KVYYISNC 518 (786)
Q Consensus 511 ~vy~is~~ 518 (786)
+.+.|.+.
T Consensus 90 ~~V~V~G~ 97 (132)
T 3ull_A 90 SRIYLEGK 97 (132)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEEE
Confidence 99999874
No 79
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=72.11 E-value=1.7 Score=34.97 Aligned_cols=28 Identities=32% Similarity=0.724 Sum_probs=22.2
Q ss_pred CCCCCCCCcc-eeeCCCceeecccCCCcCCc
Q psy15132 223 ACPSQDCNKK-VIDQNNGMYRCEKCNKEFNT 252 (786)
Q Consensus 223 aC~~~~C~kK-v~~~~~~~~~C~~C~~~~~~ 252 (786)
-|| .|.|. |.....|.|.|.+|++.+.-
T Consensus 28 ~C~--fCgk~~vkR~a~GIW~C~~C~~~~AG 56 (72)
T 3jyw_9 28 DCS--FCGKKTVKRGAAGIWTCSCCKKTVAG 56 (72)
T ss_dssp CCS--SCCSSCBSBCSSSCBCCSSSCCCCCC
T ss_pred cCC--CCCCceeEecCCCeEECCCCCCEEeC
Confidence 688 89765 55667899999999998654
No 80
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=71.49 E-value=11 Score=39.18 Aligned_cols=63 Identities=24% Similarity=0.342 Sum_probs=49.1
Q ss_pred CCceEEEEEEeecCCcceecCCCCCceEEEEEEE------cCCC-------cEEEEEcchhHHHhhhhccCCcEEEEcce
Q psy15132 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------DESG-------EIRATMFNDECNRFHDMIEKDKVYYISNC 518 (786)
Q Consensus 452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D~~G-------~I~at~~~~~~~kf~~~l~~G~vy~is~~ 518 (786)
+++..|.+||..--.+|...+ | ..+.+|.|+ |+.| -|++++|+.+++.+.. |+.|+.+.|.+.
T Consensus 129 mN~V~L~GrL~~dPelr~t~~--G-~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~-l~KG~~V~V~Gr 204 (301)
T 1se8_A 129 MNEVLVLGNVTRDPEIRYTPA--G-DAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKE-LRKGDPVMIMGR 204 (301)
T ss_dssp EEEEEEEEEECSCCEEEECTT--C-CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTT-CCTTCEEEEEEE
T ss_pred eeEEEEEEEECcCCEEEECCC--C-CEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHh-cCCCCEEEEEEE
Confidence 477899999998888887643 2 256666553 4445 2999999999999999 999999999974
No 81
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=71.41 E-value=1.4 Score=38.71 Aligned_cols=27 Identities=37% Similarity=1.073 Sum_probs=21.9
Q ss_pred CCCCCCCCc-ceeeCCCceeecccCCCcCC
Q psy15132 223 ACPSQDCNK-KVIDQNNGMYRCEKCNKEFN 251 (786)
Q Consensus 223 aC~~~~C~k-Kv~~~~~~~~~C~~C~~~~~ 251 (786)
-|| .|.+ +|.....|.|.|.+|++.+.
T Consensus 62 tCP--fCGk~~vKR~avGIW~C~~Cgk~fA 89 (116)
T 3cc2_Z 62 ACP--NCGEDRVDRQGTGIWQCSYCDYKFT 89 (116)
T ss_dssp ECS--SSCCEEEEEEETTEEEETTTCCEEE
T ss_pred cCC--CCCCceeEecCceeEECCCCCCEEE
Confidence 589 8998 66666788999999998753
No 82
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=70.22 E-value=1.6 Score=36.34 Aligned_cols=26 Identities=38% Similarity=1.108 Sum_probs=21.2
Q ss_pred CCCCCCCCc-ceeeCCCceeecccCCCcC
Q psy15132 223 ACPSQDCNK-KVIDQNNGMYRCEKCNKEF 250 (786)
Q Consensus 223 aC~~~~C~k-Kv~~~~~~~~~C~~C~~~~ 250 (786)
.|| .|.+ .+..+..|.|.|+.|+..+
T Consensus 29 ~Cp--~CG~~~v~r~atGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 29 ACP--NCGEDRVDRQGTGIWQCSYCDYKF 55 (83)
T ss_dssp ECS--SSCCEEEEEEETTEEEETTTCCEE
T ss_pred cCC--CCCCcceeccCCCeEECCCCCCEe
Confidence 699 8998 4556678899999999864
No 83
>3rlo_A Gamma-interferon-inducible protein 16; HIN200/OB fold/DNA binding, DNA binding/cytosolic DNA sensor cytosol, DNA binding protein; 1.80A {Homo sapiens} PDB: 3rnu_A* 3b6y_A 3rln_A
Probab=69.27 E-value=82 Score=30.15 Aligned_cols=161 Identities=12% Similarity=0.118 Sum_probs=111.6
Q ss_pred EEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEEeccCCcccccCCceE
Q psy15132 456 TIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYE 535 (786)
Q Consensus 456 ~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~~a~~~y~~~~~~ye 535 (786)
...|-|+.-.+.=.|..+. ..++|+-+++-++.-.++-+|+-. +.+.+..++++.||++.- +.--
T Consensus 11 P~~VmVLkaTepF~Ye~~E-~k~MFHATVATetqfF~VKVfn~~---LKeKF~pk~iI~ISdY~~-----------~~gf 75 (204)
T 3rlo_A 11 LKEVMVLNATESFVYEPKE-QKKMFHATVATENEVFRVKVFNID---LKEKFTPKKIIAIANYVC-----------RNGF 75 (204)
T ss_dssp CEEEEEEEECCCEEEETTT-TEEEEEEEEECSSCEEEEEECCGG---GTTTTCTTCEEEEESCEE-----------ETTE
T ss_pred CeEEEEEeccCCceecccc-cceEEEEEEeeccceEEEEEecch---hhhhcCCCcEEEEEeccc-----------ccce
Confidence 4567777777777887766 468999999999999999999975 467889999999999753 3346
Q ss_pred EEEccccEEEEccCCCCCCCCcceee----ccCcccccccCCCceeeEEEEEEEcccceeEEeecCCceeeEEEEEEeec
Q psy15132 536 MSFTHSTTVIPCNEDEVGNMPSVKYC----FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ 611 (786)
Q Consensus 536 i~f~~~T~I~~~~d~~~~~iP~~~~~----f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~ 611 (786)
|..++.|.|.++..+..-.+|.--.. --+|++|.....+.+|+=+=.|... +.+. ...-..|.|+
T Consensus 76 LEi~~~SsVse~~~dq~~eVp~~ii~~A~~TPKI~~L~~q~~Gt~V~G~F~v~KK------~v~~-----~~~~YeI~Dn 144 (204)
T 3rlo_A 76 LEVYPFTLVADVNADRNMEIPKGLIRSASVTPKINQLCSQTKGSFVNGVFEVHKK------NVRG-----EFTYYEIQDN 144 (204)
T ss_dssp EEECTTSEEEECCSSSCCCCCHHHHHHHHCCCCHHHHHTCSSCEEEEEEEEEEEE------EEET-----TEEEEEEEET
T ss_pred EEEecccEEEEccCCceeEcCHHHHHhcccCcchhhhhcCCCCCEEeEEEEEEEE------Eecc-----ceEEEEEecC
Confidence 78888999999864442256754221 1368888887778776643333321 1111 2345688999
Q ss_pred cccEEEEEEeccccccccCCCCCEEEEEeEEEe
Q psy15132 612 SQASVTMTLWGKEAETFDASNKPVIAVKAARVS 644 (786)
Q Consensus 612 s~~~i~~tLWg~~a~~~~~~~~~vv~i~~~~V~ 644 (786)
+| .++|...|.... ....+|+-+.+.-..++
T Consensus 145 TG-~MeVvv~G~~~~-i~CEeGDKLrL~cFeL~ 175 (204)
T 3rlo_A 145 TG-KMEVVVHGRLTT-INCEEGDKLKLTCFELA 175 (204)
T ss_dssp TE-EEEEEECGGGGG-CCCCTTCEEEEEEEEEE
T ss_pred CC-cEEEEEeccCcc-cccCCCCeeEEEEEEEe
Confidence 99 799999998663 45667776655444443
No 84
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=69.22 E-value=1.8 Score=35.90 Aligned_cols=27 Identities=37% Similarity=1.040 Sum_probs=21.6
Q ss_pred CCCCCCCCcc-eeeCCCceeecccCCCcCC
Q psy15132 223 ACPSQDCNKK-VIDQNNGMYRCEKCNKEFN 251 (786)
Q Consensus 223 aC~~~~C~kK-v~~~~~~~~~C~~C~~~~~ 251 (786)
-|| .|.|. |.....|.|.|.+|++.+.
T Consensus 37 ~Cp--fCGk~~vkR~a~GIW~C~kCg~~~A 64 (83)
T 3j21_i 37 TCP--VCGRKAVKRISTGIWQCQKCGATFA 64 (83)
T ss_dssp CCS--SSCSSCEEEEETTEEEETTTCCEEE
T ss_pred CCC--CCCCceeEecCcCeEEcCCCCCEEe
Confidence 689 89875 5556789999999998754
No 85
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=68.14 E-value=24 Score=38.74 Aligned_cols=91 Identities=10% Similarity=0.089 Sum_probs=62.9
Q ss_pred eeecccCCC--CCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhH--H--HhhhhccCCcEEEEc
Q psy15132 443 HPIVSLSPY--QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDEC--N--RFHDMIEKDKVYYIS 516 (786)
Q Consensus 443 ~~I~~L~p~--~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~--~--kf~~~l~~G~vy~is 516 (786)
+.+++|... ....+|.|||.++ |.. |++.=++|.|.+|.|++++-.+.+ + +....|..|+++.+.
T Consensus 5 ~~~~~l~~~~~~~~V~v~G~v~~~---R~~------g~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~ 75 (434)
T 1x54_A 5 VYCQEVKPELDGKKVRLAGWVYTN---MRV------GKKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVIVE 75 (434)
T ss_dssp CCGGGCCGGGTTCEEEEEEEEEEE---EEE------TTEEEEEEEETTEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEE
T ss_pred EEHHHhhHHhCCCEEEEEEEEEEE---ecC------CCeEEEEEEECCEEEEEEEECCcCCHHHHHHHhcCCCCCEEEEE
Confidence 346666532 3468999999953 432 577778999999999999965432 1 222569999999999
Q ss_pred ceEEeccCCcccccCCceEEEEccccEEEEc
Q psy15132 517 NCTLKPANKKFSSINNDYEMSFTHSTTVIPC 547 (786)
Q Consensus 517 ~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~ 547 (786)
+.-.+... ....+||...+-..+..+
T Consensus 76 G~v~~~~~-----~~~~~el~~~~~~vl~~~ 101 (434)
T 1x54_A 76 GIVKADER-----APGGAEVHVEKLEVIQAV 101 (434)
T ss_dssp EEEEECTT-----SGGGEEEEEEEEEEEECC
T ss_pred EEEEecCC-----CCccEEEEEeEEEEeecC
Confidence 86554422 135899998876666655
No 86
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=65.85 E-value=21 Score=39.16 Aligned_cols=89 Identities=13% Similarity=0.079 Sum_probs=61.6
Q ss_pred eecccCCC--CCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchh--HHHhhhhccCCcEEEEcceE
Q psy15132 444 PIVSLSPY--QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE--CNRFHDMIEKDKVYYISNCT 519 (786)
Q Consensus 444 ~I~~L~p~--~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~--~~kf~~~l~~G~vy~is~~~ 519 (786)
.+++|... ....+|.|||.++ |.. |++.=++|.|.+|.|++++-.+. .+. ...|..|+++.+.+.-
T Consensus 6 ~~~~l~~~~~~~~V~v~Gwv~~~---R~~------g~~~F~~lrD~~g~iQ~v~~~~~~~~~~-~~~l~~~~~v~v~G~v 75 (429)
T 1wyd_A 6 FIADVTPEYDGKEVIWAGWVHLL---RDL------GGKKFIILRDKTGLGQVVVDKNSSAFGI-SQELTQESVIQVRGIV 75 (429)
T ss_dssp CTTTCCGGGTTCEEEEEEEEEEE---EEE------TTEEEEEEEETTEEEEEEECTTSTTHHH-HTTCCTTCEEEEEEEE
T ss_pred EHHHhhHHhCCCEEEEEEEEEEE---ecC------CCeEEEEEEECCeeEEEEEeCChHHHHH-HHhCCCCCEEEEEEEE
Confidence 45555431 3468999999953 432 57777899999999999986542 222 2569999999999865
Q ss_pred EeccCCcccccCCceEEEEccccEEEEc
Q psy15132 520 LKPANKKFSSINNDYEMSFTHSTTVIPC 547 (786)
Q Consensus 520 V~~a~~~y~~~~~~yei~f~~~T~I~~~ 547 (786)
.+... ....+||...+-..+..+
T Consensus 76 ~~~~~-----~~~~~el~~~~~~vl~~~ 98 (429)
T 1wyd_A 76 KADKR-----APRGIELHAEEITLLSKA 98 (429)
T ss_dssp EECSS-----SGGGEEEEEEEEEEEECC
T ss_pred EecCC-----CCccEEEEEeEEEEeccC
Confidence 44321 135899998876666655
No 87
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=65.43 E-value=30 Score=37.99 Aligned_cols=92 Identities=11% Similarity=0.095 Sum_probs=63.2
Q ss_pred eeecccCCC--CCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhH----HHhhhhccCCcEEEEc
Q psy15132 443 HPIVSLSPY--QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDEC----NRFHDMIEKDKVYYIS 516 (786)
Q Consensus 443 ~~I~~L~p~--~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~----~kf~~~l~~G~vy~is 516 (786)
+.+++|... ....+|.|||.++ |. .|++.=++|.|.+|.|++++-.+.+ -+....|..|+++.+.
T Consensus 5 ~~~~~l~~~~~g~~V~v~Gwv~~~---R~------~g~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~ 75 (438)
T 3nem_A 5 HYSSEITEELNGQKVKVAGWVWEV---KD------LGGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVE 75 (438)
T ss_dssp CCGGGCCGGGTTCEEEEEEEEEEE---EE------ETTEEEEEEEETTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEE
T ss_pred EEHHHcchhcCCCEEEEEEEEEEE---ec------CCCeEEEEEEECCeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEE
Confidence 456666643 3568999999853 43 2577778999999999999876532 1233469999999998
Q ss_pred ceEEeccCCcccccCCceEEEEccccEEEEcc
Q psy15132 517 NCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548 (786)
Q Consensus 517 ~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~ 548 (786)
+.-++.. . ....+||...+-..+.++.
T Consensus 76 G~v~~~~-~----~~~~~el~~~~i~vl~~~~ 102 (438)
T 3nem_A 76 GVVNFTP-K----AKLGFEILPEKIVVLNRAE 102 (438)
T ss_dssp EEEEECT-T----STTSEEEEEEEEEEEECBC
T ss_pred EEEEeCC-C----CCCcEEEEEEEEEEEecCC
Confidence 7544322 1 2367999888766666553
No 88
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=64.62 E-value=31 Score=39.36 Aligned_cols=96 Identities=15% Similarity=0.182 Sum_probs=64.2
Q ss_pred eecccCCC--CCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHH--hhhhccCCcEEEEcceE
Q psy15132 444 PIVSLSPY--QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNR--FHDMIEKDKVYYISNCT 519 (786)
Q Consensus 444 ~I~~L~p~--~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~k--f~~~l~~G~vy~is~~~ 519 (786)
.+.+|... ....+|.|||.++ |. .|++.=++|.|.+|.|++++-.+..+. ....|..|+++.+.+.-
T Consensus 5 ~~~~l~~~~~g~~V~l~GwV~~~---R~------~G~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v 75 (585)
T 1c0a_A 5 YCGQLRLSHVGQQVTLCGWVNRR---RD------LGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTV 75 (585)
T ss_dssp CGGGCCGGGTTCEEEEEEEEEEE---EE------CSSCEEEEEEETTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEE
T ss_pred EHHHHHHHhCCCEEEEEEEEEEE---ec------CCCcEEEEEEECCeeEEEEEeCCchHHHHHHhcCCCCCEEEEEeEE
Confidence 34555432 3468999999853 33 357788899999999999986543222 23569999999999865
Q ss_pred EeccCCcccc--cCCceEEEEccccEEEEcc
Q psy15132 520 LKPANKKFSS--INNDYEMSFTHSTTVIPCN 548 (786)
Q Consensus 520 V~~a~~~y~~--~~~~yei~f~~~T~I~~~~ 548 (786)
++...+.-++ ..+.+||...+-..+..+.
T Consensus 76 ~~~~~~~~n~~~~~geiEl~~~~i~vl~~a~ 106 (585)
T 1c0a_A 76 RARDEKNINRDMATGEIEVLASSLTIINRAD 106 (585)
T ss_dssp EECCTTTCCTTSTTTTEEEEEEEEEEEECCC
T ss_pred EccCcccccccCCCccEEEEEeEEEEEeccC
Confidence 5443222222 2478999998876666653
No 89
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=64.22 E-value=22 Score=39.95 Aligned_cols=79 Identities=18% Similarity=0.264 Sum_probs=57.8
Q ss_pred CceEEEEEEeecCCcceecCCCCCc-eEEEEEEEcCCCcEEEEEcchhH------HHhhhhccCCcEEEEcceEEeccCC
Q psy15132 453 NKWTIKARVTNKTPIREWNNARGSG-KLFSIDLLDESGEIRATMFNDEC------NRFHDMIEKDKVYYISNCTLKPANK 525 (786)
Q Consensus 453 ~~w~I~~RV~~k~~~r~~~~~~~~g-~~~~~~L~D~~G~I~at~~~~~~------~kf~~~l~~G~vy~is~~~V~~a~~ 525 (786)
...+|.|||.++ |. .| ++.=++|.|.+|.|++++-.+.+ +++...|..|+++.+.+.-.+..
T Consensus 56 ~~V~v~Grv~~~---R~------~gkk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~-- 124 (521)
T 3bju_A 56 ITLKVAGRIHAK---RA------SGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTK-- 124 (521)
T ss_dssp CCEEEEEEEEEE---EE------SSSSEEEEEEEETTEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECT--
T ss_pred cEEEEEEEEEEE---ec------CCCCcEEEEEEECCEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecC--
Confidence 468999999953 43 35 77778999999999999865432 23345699999999998655432
Q ss_pred cccccCCceEEEEccccEEEEc
Q psy15132 526 KFSSINNDYEMSFTHSTTVIPC 547 (786)
Q Consensus 526 ~y~~~~~~yei~f~~~T~I~~~ 547 (786)
...+||...+...+..+
T Consensus 125 -----~ge~ei~~~~i~~l~~~ 141 (521)
T 3bju_A 125 -----KGELSIIPYEITLLSPC 141 (521)
T ss_dssp -----TCCEEEEEEEEEEEECC
T ss_pred -----CCCEEEEEeEEEEeecC
Confidence 35788888876666655
No 90
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=63.96 E-value=2.6 Score=35.60 Aligned_cols=28 Identities=29% Similarity=0.594 Sum_probs=21.8
Q ss_pred CCCCCCCCcc-eeeCCCceeecccCCCcCCc
Q psy15132 223 ACPSQDCNKK-VIDQNNGMYRCEKCNKEFNT 252 (786)
Q Consensus 223 aC~~~~C~kK-v~~~~~~~~~C~~C~~~~~~ 252 (786)
-|| .|.|. |.....|.|.|.+|++.+.-
T Consensus 38 ~Cp--fCgk~~vkR~a~GIW~C~~Cg~~~AG 66 (92)
T 3iz5_m 38 FCE--FCGKFAVKRKAVGIWGCKDCGKVKAG 66 (92)
T ss_dssp CCT--TTCSSCBEEEETTEEECSSSCCEEEC
T ss_pred cCc--ccCCCeeEecCcceEEcCCCCCEEeC
Confidence 689 89865 55567889999999987543
No 91
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=62.43 E-value=2.8 Score=34.83 Aligned_cols=26 Identities=38% Similarity=1.108 Sum_probs=20.2
Q ss_pred CCCCccccc-cccccCCceeeeCCCCCcC
Q psy15132 688 ACPSQDCNK-KVIDQNNGMYRCEKCNKEF 715 (786)
Q Consensus 688 aC~~~~C~k-kv~~~~~g~~~C~~C~~~~ 715 (786)
.|| .|.+ .+.....|.|.|+.|+..+
T Consensus 29 ~Cp--~CG~~~v~r~atGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 29 ACP--NCGEDRVDRQGTGIWQCSYCDYKF 55 (83)
T ss_dssp ECS--SSCCEEEEEEETTEEEETTTCCEE
T ss_pred cCC--CCCCcceeccCCCeEECCCCCCEe
Confidence 599 6998 4445567899999999864
No 92
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=62.02 E-value=36 Score=31.96 Aligned_cols=70 Identities=11% Similarity=0.148 Sum_probs=52.0
Q ss_pred CCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcC-------CC------c-EEEEEcchh-HHHhhhhccCCcEE
Q psy15132 449 SPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDE-------SG------E-IRATMFNDE-CNRFHDMIEKDKVY 513 (786)
Q Consensus 449 ~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~-------~G------~-I~at~~~~~-~~kf~~~l~~G~vy 513 (786)
-...++..+.||+.+--++|... ..+.+|.|+=. +| + +++++|+.. ++.....|+.|+-+
T Consensus 19 a~smNkViLiGrLg~DPElR~t~-----~~Va~fsLAt~~r~~~~~~ge~~~~Tdw~~Vv~wgk~lAE~~~~yL~KGs~V 93 (164)
T 3k81_C 19 CKSVNSVTLVGVVHDIQSGFVYE-----DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVV 93 (164)
T ss_dssp -CCEEEEEEEEEEECCCCEESSS-----CEECCEEEEECCC--------CCCCCEEEEEEECCHHHHHHHHHHCCTTCEE
T ss_pred hcCCcEEEEEEEeccCCEEEEcC-----ccEEEEEEEEcCceeeCCCCcCccceEEEEEEEECCHHHHHHHhhcCCCCEE
Confidence 34567899999999999988764 35656655422 23 3 999999999 99999999999999
Q ss_pred EEcc-eEEecc
Q psy15132 514 YISN-CTLKPA 523 (786)
Q Consensus 514 ~is~-~~V~~a 523 (786)
+|.+ .+.+.+
T Consensus 94 ~VeGrL~tr~w 104 (164)
T 3k81_C 94 CVNGRLRLSPQ 104 (164)
T ss_dssp EECCEEEEECC
T ss_pred EEEEEEEeeeE
Confidence 9987 444443
No 93
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=61.53 E-value=4.1 Score=32.77 Aligned_cols=28 Identities=32% Similarity=0.724 Sum_probs=20.8
Q ss_pred CCCCcccccc-ccccCCceeeeCCCCCcCCc
Q psy15132 688 ACPSQDCNKK-VIDQNNGMYRCEKCNKEFNT 717 (786)
Q Consensus 688 aC~~~~C~kk-v~~~~~g~~~C~~C~~~~~~ 717 (786)
-|| -|.|. |.-...|.|.|.+|++.+.-
T Consensus 28 ~C~--fCgk~~vkR~a~GIW~C~~C~~~~AG 56 (72)
T 3jyw_9 28 DCS--FCGKKTVKRGAAGIWTCSCCKKTVAG 56 (72)
T ss_dssp CCS--SCCSSCBSBCSSSCBCCSSSCCCCCC
T ss_pred cCC--CCCCceeEecCCCeEECCCCCCEEeC
Confidence 588 69874 43346799999999987643
No 94
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=61.04 E-value=3 Score=35.16 Aligned_cols=28 Identities=32% Similarity=0.724 Sum_probs=21.5
Q ss_pred CCCCCCCCcc-eeeCCCceeecccCCCcCCc
Q psy15132 223 ACPSQDCNKK-VIDQNNGMYRCEKCNKEFNT 252 (786)
Q Consensus 223 aC~~~~C~kK-v~~~~~~~~~C~~C~~~~~~ 252 (786)
-|| .|.|. |.....|.|.|.+|++.+.-
T Consensus 38 ~Cp--fCgk~~vkR~a~GIW~C~~C~~~~AG 66 (92)
T 3izc_m 38 DCS--FCGKKTVKRGAAGIWTCSCCKKTVAG 66 (92)
T ss_dssp CCS--SSCSSCCEEEETTEEECTTTCCEEEC
T ss_pred cCC--CCCCceeeecccceEEcCCCCCEEeC
Confidence 688 89754 55567889999999987543
No 95
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=60.37 E-value=52 Score=28.56 Aligned_cols=64 Identities=9% Similarity=0.178 Sum_probs=41.1
Q ss_pred CCceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCCC--CEEEEEecccccccccCCCCcEEEEEe
Q psy15132 57 DENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ--ASVTMTLWGKEAETFDASNKPVIAVKA 123 (786)
Q Consensus 57 ~~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s~--~~i~~tLWg~~a~~~~~~~~~Vi~i~~ 123 (786)
+..|-++|.++.-=+++. +. .|.....-.|-+--.++ .-|.|++|+..|+......|.-|.+.|
T Consensus 11 ~N~V~LiGrl~~dpelr~--t~-~G~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe~~~~~kG~~v~v~G 76 (107)
T 4gs3_A 11 NNTVTLVGKVFTPLEFSH--EL-YGEKFFNFILEVPRLSETKDYLPITISNRLFEGMNLEVGTRVKIEG 76 (107)
T ss_dssp CSCEEEEEEECSCCEEEE--EE-TTEEEEEEEEEEECTTSCEEEEEEEEEGGGSTTCCCCTTCEEEEEE
T ss_pred CCEEEEEEEECCCceEEE--ec-CCcEEEEEEEEeCCCCCCCcEEEEEEEhHHhhHHhhcCCCEEEEEE
Confidence 345779999987544433 22 47655444443322232 379999999999987655677666666
No 96
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=60.24 E-value=31 Score=38.75 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=56.3
Q ss_pred CceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHH----HhhhhccCCcEEEEcceEEeccCCccc
Q psy15132 453 NKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECN----RFHDMIEKDKVYYISNCTLKPANKKFS 528 (786)
Q Consensus 453 ~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~----kf~~~l~~G~vy~is~~~V~~a~~~y~ 528 (786)
...+|.|||.++ |. .|++.=++|.|.+|.|++++-.+.+. +....|..|+++.+.+.-++..
T Consensus 87 ~~V~v~GwV~~~---R~------~Gk~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~----- 152 (529)
T 4ex5_A 87 LEVAIAGRMMLK---RV------MGKASFATVQDGSGQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRTN----- 152 (529)
T ss_dssp CEEEEEEEEEEE---EE------ETTEEEEEEECSSCEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECT-----
T ss_pred cEEEEEEEEEee---ec------CCCeEEEEEEeCCeeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcC-----
Confidence 457899999954 43 25777779999999999998765432 2234599999999987554421
Q ss_pred ccCCceEEEEccccEEEEc
Q psy15132 529 SINNDYEMSFTHSTTVIPC 547 (786)
Q Consensus 529 ~~~~~yei~f~~~T~I~~~ 547 (786)
...+||...+-+.+..+
T Consensus 153 --~gelel~~~~i~vLs~a 169 (529)
T 4ex5_A 153 --KGELSVKCTQLRLLAKA 169 (529)
T ss_dssp --TSCEEEEEEEEEEEECC
T ss_pred --CCcEEEEEEEEEEEecC
Confidence 25788888776666555
No 97
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=59.74 E-value=2.9 Score=35.92 Aligned_cols=30 Identities=30% Similarity=0.696 Sum_probs=22.3
Q ss_pred CCCCCCCCcc-eeeCCCceeecccCCCcCCcee
Q psy15132 223 ACPSQDCNKK-VIDQNNGMYRCEKCNKEFNTFT 254 (786)
Q Consensus 223 aC~~~~C~kK-v~~~~~~~~~C~~C~~~~~~~~ 254 (786)
-|| .|.|. |.....|.|.|.+|++.+..--
T Consensus 38 ~Cp--fCgk~~vKR~a~GIW~C~kCg~~~AGGA 68 (103)
T 4a17_Y 38 GCP--FCGKVAVKRAAVGIWKCKPCKKIIAGGA 68 (103)
T ss_dssp ECT--TTCCEEEEEEETTEEEETTTTEEEECCS
T ss_pred CCC--CCCCceeeecCcceEEcCCCCCEEeCCc
Confidence 588 89764 5556789999999998754333
No 98
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=59.72 E-value=36 Score=38.82 Aligned_cols=96 Identities=13% Similarity=0.112 Sum_probs=63.0
Q ss_pred eecccCCC--CCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchh-HHHhhhhccCCcEEEEcceEE
Q psy15132 444 PIVSLSPY--QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDE-CNRFHDMIEKDKVYYISNCTL 520 (786)
Q Consensus 444 ~I~~L~p~--~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~-~~kf~~~l~~G~vy~is~~~V 520 (786)
.+.+|... ....+|.|||.++ |. .|++.=++|.|.+|.|++++-.+. .-+....|..|+++.+.+.-+
T Consensus 6 ~~~~l~~~~~g~~V~l~GwV~~~---R~------~G~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~l~~e~~V~V~G~v~ 76 (580)
T 1l0w_A 6 YAGSLRETHVGEEVVLEGWVNRR---RD------LGGLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVRAKGLVR 76 (580)
T ss_dssp CGGGCCGGGTTCEEEEEEEEEEE---EE------CSSCEEEEEEETTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEE
T ss_pred EHHHhHHHhCCCEEEEEEEEEEE---ec------CCCeEEEEEEECCeeEEEEEeCChhHHHHHhcCCCCcEEEEEEEEE
Confidence 44555432 3468999999853 43 257778899999999999986542 112235699999999998655
Q ss_pred eccCCcccccCCceEEEEccccEEEEcc
Q psy15132 521 KPANKKFSSINNDYEMSFTHSTTVIPCN 548 (786)
Q Consensus 521 ~~a~~~y~~~~~~yei~f~~~T~I~~~~ 548 (786)
+.....-+.....+||...+-..+..+.
T Consensus 77 ~~~~~~~~~~~ge~Ei~~~~i~vl~~a~ 104 (580)
T 1l0w_A 77 LRPEPNPRLATGRVEVELSALEVLAEAK 104 (580)
T ss_dssp ECSSCCTTSTTTTEEEEEEEEEEEECCC
T ss_pred cCCCcCccCCCccEEEEEeEEEEeccCc
Confidence 4321111112467999998876666553
No 99
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=59.26 E-value=32 Score=37.53 Aligned_cols=83 Identities=12% Similarity=0.147 Sum_probs=58.8
Q ss_pred eecccCCC-CCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhcc-CCcEEEEcceEEe
Q psy15132 444 PIVSLSPY-QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIE-KDKVYYISNCTLK 521 (786)
Q Consensus 444 ~I~~L~p~-~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~-~G~vy~is~~~V~ 521 (786)
.+++|... ....+|.|||.++ |. .|++.=++|.|.+|.|++++-. ..|. .|+++.+.+.-.+
T Consensus 4 ~~~~l~~~~~~~V~v~Gwv~~~---R~------~g~~~F~~lrD~~g~iQ~v~~~-------~~l~~~~~~v~v~G~v~~ 67 (422)
T 1n9w_A 4 LVRDLKAHVGQEVELLGFLHWR---RD------LGRIQFLLLRDRSGVVQVVTGG-------LKLPLPESALRVRGLVVE 67 (422)
T ss_dssp CGGGGGGCTTSEEEEEEEEEEE---EE------CSSEEEEEEEETTEEEEEEEES-------CCCCCTTCEEEEEEEEEE
T ss_pred EHHHHHhcCCCEEEEEEEEEEE---ec------CCCeEEEEEEECCEEEEEEEEc-------cccCCCCCEEEEEEEEEe
Confidence 45555422 3568999999953 32 3677778999999999998754 5688 9999999986544
Q ss_pred ccCCcccccCCceEEEEccccEEEEc
Q psy15132 522 PANKKFSSINNDYEMSFTHSTTVIPC 547 (786)
Q Consensus 522 ~a~~~y~~~~~~yei~f~~~T~I~~~ 547 (786)
... ....+||...+-..+..+
T Consensus 68 ~~~-----~~~~~el~~~~~~vl~~~ 88 (422)
T 1n9w_A 68 NAK-----APGGLEVQAKEVEVLSPA 88 (422)
T ss_dssp CTT-----STTSEEEEEEEEEEEECC
T ss_pred cCC-----CCccEEEEEeEEEEeccC
Confidence 322 135789988876666555
No 100
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=59.23 E-value=19 Score=43.89 Aligned_cols=73 Identities=12% Similarity=0.218 Sum_probs=57.2
Q ss_pred ceeeecccCCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcch--hHHHhhhhccCCcEEEEcc
Q psy15132 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFND--ECNRFHDMIEKDKVYYISN 517 (786)
Q Consensus 441 ~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~--~~~kf~~~l~~G~vy~is~ 517 (786)
+++||++|.....+..|.|.|... +.|...+ ...++.+.+.|-++.|.+..|.. ....+.+.|++|+|+.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~g~v~~~-~~~~~~~---~~~~~~~~~td~~~~~~~k~f~~~~~~~~~~~~~~~g~~~~~~g 80 (1041)
T 3f2b_A 6 PVRRLETIVEEERRVVVQGYVFDA-EVSELKS---GRTLLTMKITDYTNSILVKMFSRDKEDAELMSGVKKGMWVKVRG 80 (1041)
T ss_dssp -CBCGGGCCSCEEEEEEEEEEEEE-EEEECTT---SCEEEEEEEECSSCEEEEEEECSSHHHHHHHHTCCTTCEEEEEE
T ss_pred CcccHHHhhcccceEEEEEEEEEE-EEEEccC---CCEEEEEEEEeCCCCEEEEEeecccchHHHHhcCCCCCEEEEEE
Confidence 468999999998999999998863 4455533 24788999999999999988744 3345667899999998876
No 101
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=58.82 E-value=58 Score=28.23 Aligned_cols=66 Identities=9% Similarity=0.174 Sum_probs=42.5
Q ss_pred eeeEEEEEEEcccceeEEeecCCceeeEEEEEEeeccc--cEEEEEEeccccccccCCCCCEEEEEeEEEee
Q psy15132 576 NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQ--ASVTMTLWGKEAETFDASNKPVIAVKAARVSE 645 (786)
Q Consensus 576 ~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~--~~i~~tLWg~~a~~~~~~~~~vv~i~~~~V~~ 645 (786)
.|-++|.++.=-++. .+. .|+.+..-.|-+--.++ .-|.|++|+..|+......|.-|.+.| +++.
T Consensus 13 ~V~LiGrl~~dpelr--~t~-~G~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe~~~~~kG~~v~v~G-~lrs 80 (107)
T 4gs3_A 13 TVTLVGKVFTPLEFS--HEL-YGEKFFNFILEVPRLSETKDYLPITISNRLFEGMNLEVGTRVKIEG-QLRS 80 (107)
T ss_dssp CEEEEEEECSCCEEE--EEE-TTEEEEEEEEEEECTTSCEEEEEEEEEGGGSTTCCCCTTCEEEEEE-EEEE
T ss_pred EEEEEEEECCCceEE--Eec-CCcEEEEEEEEeCCCCCCCcEEEEEEEhHHhhHHhhcCCCEEEEEE-EEEe
Confidence 477999997633332 222 47766544444332222 379999999999987666788777776 5543
No 102
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=58.81 E-value=30 Score=37.95 Aligned_cols=93 Identities=16% Similarity=0.177 Sum_probs=59.4
Q ss_pred eecccCCC-CCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhh-hhccCCcEEEEcceEEe
Q psy15132 444 PIVSLSPY-QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH-DMIEKDKVYYISNCTLK 521 (786)
Q Consensus 444 ~I~~L~p~-~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~-~~l~~G~vy~is~~~V~ 521 (786)
.|++|... ....+|.|||.++ |.. | +++.=++|.|.+|.|++++-++..+.|. ..|..|+++.+.+.-.+
T Consensus 2 ~i~~~~~~~~~~V~v~Gwv~~~---R~~----G-k~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v~~ 73 (435)
T 2xgt_A 2 KIRDLVKHRNERVCIKGWIHRM---RRQ----G-KSLMFFILRDGTGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIKE 73 (435)
T ss_dssp CGGGGGGGTTSEEEEEEEEEEE---EEC----T-TSEEEEEEECSSCEEEEEEEGGGGSSHHHHHCCTTCEEEEEEEEEE
T ss_pred chhhhhhcCCCEEEEEEEEEEe---ccc----C-CCcEEEEEEECCceEEEEECCcchhHHHHhcCCCCCEEEEEEEEEe
Confidence 46666543 3468999999953 432 1 2577789999999999998654322221 15899999999986554
Q ss_pred ccCCcccccCCceEEEEccccEEEE
Q psy15132 522 PANKKFSSINNDYEMSFTHSTTVIP 546 (786)
Q Consensus 522 ~a~~~y~~~~~~yei~f~~~T~I~~ 546 (786)
...+. ...+.+||....-..+..
T Consensus 74 ~~~~~--~~~g~~El~~~~~~vl~~ 96 (435)
T 2xgt_A 74 VPEGK--EAPNGHELIADFWKIIGN 96 (435)
T ss_dssp CC--------TTEEEEEEEEEEEEC
T ss_pred cCCCc--CCCCcEEEEEEEEEEeec
Confidence 22111 224689998887666554
No 103
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=58.37 E-value=52 Score=30.28 Aligned_cols=67 Identities=12% Similarity=0.129 Sum_probs=48.6
Q ss_pred CCCceEEEEEEeecCCcceecCCCCCceEEEEEEEc------CCC-------c-EEEEEcchh-HHHhhhhccCCcEEEE
Q psy15132 451 YQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD------ESG-------E-IRATMFNDE-CNRFHDMIEKDKVYYI 515 (786)
Q Consensus 451 ~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D------~~G-------~-I~at~~~~~-~~kf~~~l~~G~vy~i 515 (786)
..++..|.+|+.+--. |.. + | ..+.+|.|+= .+| + +++++|+.. ++.....|+.|+-++|
T Consensus 5 ~~NkV~LiGrLg~DPe-r~t-~--G-~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe~~~~yl~KG~~V~V 79 (148)
T 3k7u_C 5 SVNSVTLVGVVHDIQS-GFV-Y--E-DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCV 79 (148)
T ss_dssp CCCCEEEEEEEEEEEE-EES-S--S-SEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHHCCTTCEEEE
T ss_pred cCcEEEEEEEeccCCE-eee-C--C-cEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHHHHHhhCCCCCEEEE
Confidence 3578899999998777 654 2 2 3666666542 112 3 999999997 9999999999999999
Q ss_pred cc-eEEec
Q psy15132 516 SN-CTLKP 522 (786)
Q Consensus 516 s~-~~V~~ 522 (786)
.+ .+...
T Consensus 80 eGrL~~r~ 87 (148)
T 3k7u_C 80 NGRLRLSP 87 (148)
T ss_dssp EEEEEECC
T ss_pred EEEEEeee
Confidence 87 34433
No 104
>2xvs_A Tetratricopeptide repeat protein 5; antitumor protein, P53 cofactor, stress-response; 1.80A {Homo sapiens}
Probab=57.78 E-value=23 Score=33.25 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=53.9
Q ss_pred CceeeecccCCCCC-ceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCc-EEEEEcchhHHHhhhhccCCcEEEEcc
Q psy15132 440 VQTHPIVSLSPYQN-KWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNRFHDMIEKDKVYYISN 517 (786)
Q Consensus 440 ~~~~~I~~L~p~~~-~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~-I~at~~~~~~~kf~~~l~~G~vy~is~ 517 (786)
-+..+|++|.++.+ .-.|.+||+. ... ..+.--|.+.++|.+|+ .-++++|-. +.+. +.+||.+.|-.
T Consensus 61 l~~~~l~~L~~G~N~g~vv~gKVv~-----~i~--~e~~vP~~f~~vD~~g~c~avsVYNl~-~~~G--~~iGDsV~Ipe 130 (166)
T 2xvs_A 61 LELKPLSTLQPGVNSGAVILGKVVF-----SLT--TEEKVPFTFGLVDSDGPCYAVMVYNIV-QSWG--VLIGDSVAIPE 130 (166)
T ss_dssp CEECCGGGCCSEECTTEEEEEEEEE-----EEC--CTTCCSEEEEEESSSSCCEEEEECCCC-SSCC--CCTTCEEEEES
T ss_pred eeeeeHHHcccccCCCcEEEEEEEE-----Eec--CCCCCceEEEEECCCCCEEEEEEEecc-CCcc--eEecCEEEeCC
Confidence 35679999999855 5689999993 222 23346699999999997 888899853 2121 78899998888
Q ss_pred eEEec
Q psy15132 518 CTLKP 522 (786)
Q Consensus 518 ~~V~~ 522 (786)
..++.
T Consensus 131 P~v~~ 135 (166)
T 2xvs_A 131 PNLRL 135 (166)
T ss_dssp CEEEE
T ss_pred CcEEE
Confidence 76654
No 105
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.61 E-value=5.4 Score=29.82 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=19.9
Q ss_pred eCCCCCCCCcceeeCCCceeecccCCCcCC
Q psy15132 222 KACPSQDCNKKVIDQNNGMYRCEKCNKEFN 251 (786)
Q Consensus 222 ~aC~~~~C~kKv~~~~~~~~~C~~C~~~~~ 251 (786)
.-|+ .|+..+ ..+.|.|.+|+.+..
T Consensus 15 ~iCp--kC~a~~---~~gaw~CrKCG~~~l 39 (51)
T 3j21_g 15 YVCL--RCGATN---PWGAKKCRKCGYKRL 39 (51)
T ss_dssp EECT--TTCCEE---CTTCSSCSSSSSCCC
T ss_pred ccCC--CCCCcC---CCCceecCCCCCccc
Confidence 3599 999985 467999999997643
No 106
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=55.87 E-value=4.5 Score=33.47 Aligned_cols=26 Identities=38% Similarity=1.083 Sum_probs=19.7
Q ss_pred CCCCcccccc-ccccCCceeeeCCCCCcC
Q psy15132 688 ACPSQDCNKK-VIDQNNGMYRCEKCNKEF 715 (786)
Q Consensus 688 aC~~~~C~kk-v~~~~~g~~~C~~C~~~~ 715 (786)
-|| -|.|. |.-...|.|.|.+|++.+
T Consensus 37 ~Cp--fCGk~~vkR~a~GIW~C~kCg~~~ 63 (83)
T 3j21_i 37 TCP--VCGRKAVKRISTGIWQCQKCGATF 63 (83)
T ss_dssp CCS--SSCSSCEEEEETTEEEETTTCCEE
T ss_pred CCC--CCCCceeEecCcCeEEcCCCCCEE
Confidence 588 69875 333467999999999864
No 107
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=55.71 E-value=4.2 Score=35.72 Aligned_cols=26 Identities=38% Similarity=1.108 Sum_probs=19.8
Q ss_pred CCCCccccc-cccccCCceeeeCCCCCcC
Q psy15132 688 ACPSQDCNK-KVIDQNNGMYRCEKCNKEF 715 (786)
Q Consensus 688 aC~~~~C~k-kv~~~~~g~~~C~~C~~~~ 715 (786)
-|| .|.| +|.-...|.|.|.+|++.+
T Consensus 62 tCP--fCGk~~vKR~avGIW~C~~Cgk~f 88 (116)
T 3cc2_Z 62 ACP--NCGEDRVDRQGTGIWQCSYCDYKF 88 (116)
T ss_dssp ECS--SSCCEEEEEEETTEEEETTTCCEE
T ss_pred cCC--CCCCceeEecCceeEECCCCCCEE
Confidence 488 6988 4544567899999999864
No 108
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=52.59 E-value=9.9 Score=28.01 Aligned_cols=29 Identities=31% Similarity=0.792 Sum_probs=21.7
Q ss_pred eCCCCccccc-cc-cccCCceeeeCCCCCcCCc
Q psy15132 687 KACPSQDCNK-KV-IDQNNGMYRCEKCNKEFNT 717 (786)
Q Consensus 687 ~aC~~~~C~k-kv-~~~~~g~~~C~~C~~~~~~ 717 (786)
.+|| .|+. .+ .+...|.+.|+.||..+++
T Consensus 6 ~~CP--~C~~~~l~~d~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 6 KVCP--ACESAELIYDPERGEIVCAKCGYVIEE 36 (50)
T ss_dssp CSCT--TTSCCCEEEETTTTEEEESSSCCBCCC
T ss_pred EeCc--CCCCcceEEcCCCCeEECcccCCcccc
Confidence 3799 6987 55 3445688999999987654
No 109
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=51.77 E-value=5.4 Score=32.20 Aligned_cols=32 Identities=22% Similarity=0.586 Sum_probs=22.8
Q ss_pred eCCCCccccc-cccccCCceeeeCCCCCcCCceeE
Q psy15132 687 KACPSQDCNK-KVIDQNNGMYRCEKCNKEFNTFTY 720 (786)
Q Consensus 687 ~aC~~~~C~k-kv~~~~~g~~~C~~C~~~~~~~~~ 720 (786)
.-|| -|.| +|.-...|.|.|.+|++.+.--.|
T Consensus 28 y~C~--fCgk~~vkR~a~GIW~C~~C~~~~AGGAy 60 (73)
T 1ffk_W 28 YKCP--VCGFPKLKRASTSIWVCGHCGYKIAGGAY 60 (73)
T ss_pred ccCC--CCCCceeEEEEeEEEECCCCCcEEECCCc
Confidence 3588 6988 554456789999999987544333
No 110
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=51.20 E-value=47 Score=28.48 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=37.7
Q ss_pred eeEEEEEEEcccceeEEeecCCceeeEEEEEEeec-----cc------cEEEEEEecccccccc-CCCCCEEEEEeE-EE
Q psy15132 577 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ-----SQ------ASVTMTLWGKEAETFD-ASNKPVIAVKAA-RV 643 (786)
Q Consensus 577 vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~-----s~------~~i~~tLWg~~a~~~~-~~~~~vv~i~~~-~V 643 (786)
|-++|.++.--++.. + . +|.++. ++.|.-+ .| ..|.|++||+.|+.+. ...|.-|.+.|- ..
T Consensus 5 v~L~GrLt~dPelRy-T-p-sG~~V~--~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~~~kGs~V~VeGrL~t 79 (101)
T 3en2_A 5 LQLVATLVEREVMRY-T-P-AGVPIV--NCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDRIAPGTVLECVGFLAR 79 (101)
T ss_dssp EEEEEEEEEECCCEE-C-T-TCCEEE--EEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTTSCTTCEEEEEEEEEE
T ss_pred EEEEEEECcCccEEE-C-C-CCCEEE--EEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhhcCCCCEEEEEEEEEe
Confidence 557787777655542 1 2 354433 3333322 12 1389999999998654 467888888763 33
Q ss_pred eecCCc
Q psy15132 644 SEFQGN 649 (786)
Q Consensus 644 ~~f~G~ 649 (786)
+.|+++
T Consensus 80 rs~~s~ 85 (101)
T 3en2_A 80 KHRSSK 85 (101)
T ss_dssp CC----
T ss_pred CcCCCC
Confidence 456554
No 111
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=50.42 E-value=55 Score=36.44 Aligned_cols=79 Identities=13% Similarity=0.209 Sum_probs=56.4
Q ss_pred CceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhH-H---HhhhhccCCcEEEEcceEEeccCCccc
Q psy15132 453 NKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDEC-N---RFHDMIEKDKVYYISNCTLKPANKKFS 528 (786)
Q Consensus 453 ~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~-~---kf~~~l~~G~vy~is~~~V~~a~~~y~ 528 (786)
...+|.|||.++ |. .|++.=++|.|.+|.|++++-.+.+ + +....|..|+++.+.+.-.+..
T Consensus 57 ~~V~v~Gwv~~~---R~------~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~~----- 122 (493)
T 3a74_A 57 IEVAVAGRIMTK---RG------MGKAGFAHIQDVTGQIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKTK----- 122 (493)
T ss_dssp CEEEEEEEEEEE---EE------ETTEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEECT-----
T ss_pred CEEEEEEEEEEE---ec------CCCcEEEEEEECCEeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeCC-----
Confidence 358999999953 43 3577778899999999999865432 1 1225699999999998655432
Q ss_pred ccCCceEEEEccccEEEEc
Q psy15132 529 SINNDYEMSFTHSTTVIPC 547 (786)
Q Consensus 529 ~~~~~yei~f~~~T~I~~~ 547 (786)
.+.+||...+-..+..+
T Consensus 123 --~ge~ei~~~~i~vl~~~ 139 (493)
T 3a74_A 123 --VGELSIKVSSYEFLTKA 139 (493)
T ss_dssp --TCCEEEEEEEEEEEECC
T ss_pred --CCcEEEEEEEEEEcccc
Confidence 25788888876666555
No 112
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=50.40 E-value=40 Score=37.69 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=56.4
Q ss_pred CceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhH-----HHhhhhccCCcEEEEcceEEeccCCcc
Q psy15132 453 NKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDEC-----NRFHDMIEKDKVYYISNCTLKPANKKF 527 (786)
Q Consensus 453 ~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~-----~kf~~~l~~G~vy~is~~~V~~a~~~y 527 (786)
...+|.|||.++ |. .|++.=++|.|.+|.|++++-.+.+ ++....|..|+++.+.+.-++..
T Consensus 65 ~~V~v~Gwv~~~---R~------~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~---- 131 (504)
T 1e1o_A 65 IEVSVAGRMMTR---RI------MGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQ---- 131 (504)
T ss_dssp CEEEEEEEEEEE---EE------ETTEEEEEEEETTEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECT----
T ss_pred CEEEEEEEEEEE---ec------CCCcEEEEEEECCeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEecC----
Confidence 358999999953 43 3577778899999999999855422 21335699999999998655432
Q ss_pred cccCCceEEEEccccEEEEc
Q psy15132 528 SSINNDYEMSFTHSTTVIPC 547 (786)
Q Consensus 528 ~~~~~~yei~f~~~T~I~~~ 547 (786)
...+||...+-..+..+
T Consensus 132 ---~ge~ei~~~~i~vl~~a 148 (504)
T 1e1o_A 132 ---TGELSIHCTELRLLTKA 148 (504)
T ss_dssp ---TCCEEEEEEEEEEEECC
T ss_pred ---CceEEEEEEEEEEeccc
Confidence 25788888776666554
No 113
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=50.35 E-value=47 Score=33.63 Aligned_cols=63 Identities=10% Similarity=0.126 Sum_probs=48.5
Q ss_pred CCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCC--------C-c-EEEEEcchhHHHhhhhccCCcEEEEcce
Q psy15132 452 QNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDES--------G-E-IRATMFNDECNRFHDMIEKDKVYYISNC 518 (786)
Q Consensus 452 ~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~--------G-~-I~at~~~~~~~kf~~~l~~G~vy~is~~ 518 (786)
+++..|.|||..--.+|...+ | ..+.+|.|+=.. . + |++++|+.+++... .|+.|+.+.|.+-
T Consensus 128 ~N~v~l~G~l~~dpe~r~t~~--G-~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~-~l~KG~~V~V~G~ 200 (264)
T 2fxq_A 128 LNQVILMGNLTRDPDLRYTPQ--G-TAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWAS-ELRKGDGLLVIGR 200 (264)
T ss_dssp CEEEEEEEEESSCCCCEECTT--C-CEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHT-TCCTTCEEEEEEE
T ss_pred eEEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhh-hcCCCCEEEEEEE
Confidence 478899999998888887643 2 266667664221 1 2 99999999999999 9999999999973
No 114
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=49.75 E-value=6.1 Score=33.30 Aligned_cols=27 Identities=30% Similarity=0.630 Sum_probs=20.0
Q ss_pred CCCCcccccc-ccccCCceeeeCCCCCcCC
Q psy15132 688 ACPSQDCNKK-VIDQNNGMYRCEKCNKEFN 716 (786)
Q Consensus 688 aC~~~~C~kk-v~~~~~g~~~C~~C~~~~~ 716 (786)
-|| -|.|. |.-...|.|.|.+|++.+.
T Consensus 38 ~Cp--fCgk~~vkR~a~GIW~C~~Cg~~~A 65 (92)
T 3iz5_m 38 FCE--FCGKFAVKRKAVGIWGCKDCGKVKA 65 (92)
T ss_dssp CCT--TTCSSCBEEEETTEEECSSSCCEEE
T ss_pred cCc--ccCCCeeEecCcceEEcCCCCCEEe
Confidence 589 69875 3334679999999998643
No 115
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=49.27 E-value=6.8 Score=29.27 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=19.8
Q ss_pred EeCCCCccccccccccCCceeeeCCCCCcC
Q psy15132 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEF 715 (786)
Q Consensus 686 Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~~ 715 (786)
..-|| .|+..+ ..|.|.|.+||...
T Consensus 14 k~iCp--kC~a~~---~~gaw~CrKCG~~~ 38 (51)
T 3j21_g 14 KYVCL--RCGATN---PWGAKKCRKCGYKR 38 (51)
T ss_dssp EEECT--TTCCEE---CTTCSSCSSSSSCC
T ss_pred CccCC--CCCCcC---CCCceecCCCCCcc
Confidence 45699 699984 46899999999863
No 116
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=49.12 E-value=6.3 Score=33.20 Aligned_cols=27 Identities=33% Similarity=0.764 Sum_probs=19.7
Q ss_pred CCCCcccccc-ccccCCceeeeCCCCCcCC
Q psy15132 688 ACPSQDCNKK-VIDQNNGMYRCEKCNKEFN 716 (786)
Q Consensus 688 aC~~~~C~kk-v~~~~~g~~~C~~C~~~~~ 716 (786)
-|| -|.|. |.-..-|.|.|.+|++.+.
T Consensus 38 ~Cp--fCgk~~vkR~a~GIW~C~~C~~~~A 65 (92)
T 3izc_m 38 DCS--FCGKKTVKRGAAGIWTCSCCKKTVA 65 (92)
T ss_dssp CCS--SSCSSCCEEEETTEEECTTTCCEEE
T ss_pred cCC--CCCCceeeecccceEEcCCCCCEEe
Confidence 588 69874 3334678999999988643
No 117
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=47.89 E-value=7.5 Score=31.05 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=21.5
Q ss_pred EeCCCCcccccccc-ccCCceeeeCCCCCcCC
Q psy15132 686 YKACPSQDCNKKVI-DQNNGMYRCEKCNKEFN 716 (786)
Q Consensus 686 Y~aC~~~~C~kkv~-~~~~g~~~C~~C~~~~~ 716 (786)
.-+|| .|+..+. +...|...|+.|+..+|
T Consensus 8 iL~CP--~ck~~L~~~~~~~~LiC~~cg~~YP 37 (69)
T 2pk7_A 8 ILACP--ICKGPLKLSADKTELISKGAGLAYP 37 (69)
T ss_dssp TCCCT--TTCCCCEECTTSSEEEETTTTEEEE
T ss_pred heeCC--CCCCcCeEeCCCCEEEcCCCCcEec
Confidence 45899 6998874 23457888999987653
No 118
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=47.64 E-value=5.8 Score=34.02 Aligned_cols=27 Identities=33% Similarity=0.843 Sum_probs=19.6
Q ss_pred CCCCcccccc-ccccCCceeeeCCCCCcCC
Q psy15132 688 ACPSQDCNKK-VIDQNNGMYRCEKCNKEFN 716 (786)
Q Consensus 688 aC~~~~C~kk-v~~~~~g~~~C~~C~~~~~ 716 (786)
-|| -|.|. |.-..-|.|.|.+|++.+.
T Consensus 38 ~Cp--fCgk~~vKR~a~GIW~C~kCg~~~A 65 (103)
T 4a17_Y 38 GCP--FCGKVAVKRAAVGIWKCKPCKKIIA 65 (103)
T ss_dssp ECT--TTCCEEEEEEETTEEEETTTTEEEE
T ss_pred CCC--CCCCceeeecCcceEEcCCCCCEEe
Confidence 488 69874 3334679999999988643
No 119
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=47.25 E-value=15 Score=26.93 Aligned_cols=27 Identities=33% Similarity=0.870 Sum_probs=21.3
Q ss_pred CCCCCCCCc-cee-eCCCceeecccCCCcCC
Q psy15132 223 ACPSQDCNK-KVI-DQNNGMYRCEKCNKEFN 251 (786)
Q Consensus 223 aC~~~~C~k-Kv~-~~~~~~~~C~~C~~~~~ 251 (786)
+|| .|+. .+. +...|.+.|..|+..++
T Consensus 7 ~CP--~C~~~~l~~d~~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 7 VCP--ACESAELIYDPERGEIVCAKCGYVIE 35 (50)
T ss_dssp SCT--TTSCCCEEEETTTTEEEESSSCCBCC
T ss_pred eCc--CCCCcceEEcCCCCeEECcccCCccc
Confidence 799 9987 654 45667899999998764
No 120
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=47.05 E-value=7.7 Score=30.89 Aligned_cols=29 Identities=10% Similarity=0.248 Sum_probs=21.5
Q ss_pred EeCCCCcccccccc-ccCCceeeeCCCCCcCC
Q psy15132 686 YKACPSQDCNKKVI-DQNNGMYRCEKCNKEFN 716 (786)
Q Consensus 686 Y~aC~~~~C~kkv~-~~~~g~~~C~~C~~~~~ 716 (786)
.-+|| .|+..+. +...|...|+.|+..+|
T Consensus 8 iL~CP--~ck~~L~~~~~~~~LiC~~cg~~YP 37 (68)
T 2jr6_A 8 ILVCP--VTKGRLEYHQDKQELWSRQAKLAYP 37 (68)
T ss_dssp CCBCS--SSCCBCEEETTTTEEEETTTTEEEE
T ss_pred heECC--CCCCcCeEeCCCCEEEcCCCCcEec
Confidence 46899 6998874 23457888999987653
No 121
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=46.99 E-value=7.5 Score=31.14 Aligned_cols=29 Identities=17% Similarity=0.448 Sum_probs=21.6
Q ss_pred EeCCCCcccccccc-ccCCceeeeCCCCCcCC
Q psy15132 686 YKACPSQDCNKKVI-DQNNGMYRCEKCNKEFN 716 (786)
Q Consensus 686 Y~aC~~~~C~kkv~-~~~~g~~~C~~C~~~~~ 716 (786)
.-+|| .|+..+. +...|...|+.|+..+|
T Consensus 8 iL~CP--~ck~~L~~~~~~~~LiC~~cg~~YP 37 (70)
T 2js4_A 8 ILVCP--VCKGRLEFQRAQAELVCNADRLAFP 37 (70)
T ss_dssp CCBCT--TTCCBEEEETTTTEEEETTTTEEEE
T ss_pred heECC--CCCCcCEEeCCCCEEEcCCCCceec
Confidence 46899 6999874 33457888999988653
No 122
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=46.81 E-value=7.7 Score=30.90 Aligned_cols=29 Identities=21% Similarity=0.509 Sum_probs=21.7
Q ss_pred EeCCCCcccccccc-ccCCceeeeCCCCCcCC
Q psy15132 686 YKACPSQDCNKKVI-DQNNGMYRCEKCNKEFN 716 (786)
Q Consensus 686 Y~aC~~~~C~kkv~-~~~~g~~~C~~C~~~~~ 716 (786)
.-+|| .|+..+. +...|...|+.|+..+|
T Consensus 8 iL~CP--~ck~~L~~~~~~~~LiC~~cg~~YP 37 (68)
T 2hf1_A 8 ILVCP--LCKGPLVFDKSKDELICKGDRLAFP 37 (68)
T ss_dssp ECBCT--TTCCBCEEETTTTEEEETTTTEEEE
T ss_pred heECC--CCCCcCeEeCCCCEEEcCCCCcEec
Confidence 57999 6998874 23457888999987653
No 123
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=46.40 E-value=13 Score=44.23 Aligned_cols=69 Identities=13% Similarity=0.222 Sum_probs=50.8
Q ss_pred ceeeecccCCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccC--CcEEEEcc
Q psy15132 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEK--DKVYYISN 517 (786)
Q Consensus 441 ~~~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~--G~vy~is~ 517 (786)
...+|.++.++. ..+|.|+|...... . .+.++.+.+.+.|.+|.|.+++|+.. -....|++ |+.|.+++
T Consensus 155 ~~~~~~~~~~~~-~~~~~~~v~~~~~~---~--~~~~~~~~~~~~d~~~~~~~~~f~~~--~~~~~~~~~~g~~~~~~G 225 (780)
T 1gm5_A 155 KIFKLNDLLPGE-KVTTQGKIVSVETK---K--FQNMNILTAVLSDGLVHVPLKWFNQD--YLQTYLKQLTGKEVFVTG 225 (780)
T ss_dssp CCCCSSCCCSSC-CCEEEECCCCCEEE---E--CSSCEEEEEEECCSSCCEEEEECSCC--TTHHHHHTTCSSCEEEEE
T ss_pred cCCcHHHcCCCC-EEEEEEEEEEEEee---c--CCCCeEEEEEEEECCceEEEEEECcH--HHHhhCccCCCCEEEEEE
Confidence 456888888864 66899999853221 1 12357888999999999999999942 23467888 99998875
No 124
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=45.90 E-value=48 Score=28.79 Aligned_cols=69 Identities=13% Similarity=0.266 Sum_probs=40.5
Q ss_pred CceEEEEEEEEeccceeEeeccCCceeeEEEEEEEeCC------CCEEEEEeccccccccc--CCCCcEEEEEe-EEEee
Q psy15132 58 ENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS------QASVTMTLWGKEAETFD--ASNKPVIAVKA-ARVSE 128 (786)
Q Consensus 58 ~~vDViGvV~~v~~~~~i~~k~~g~~~~kr~i~l~D~s------~~~i~~tLWg~~a~~~~--~~~~~Vi~i~~-~kv~~ 128 (786)
..|-++|.+..-=+++. +.++|... ..|.|.=.+ -.-+.|++||+.|+.+. ...|.-|++.| .+...
T Consensus 12 ~~v~LiGrL~~DPelR~--t~~g~~~v--a~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~KG~~V~VeGrL~~r~ 87 (108)
T 3koj_A 12 NSCILQATVVEAPQLRY--AQDNQTPV--AEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEGRLRINS 87 (108)
T ss_dssp EEEEEEEEEEEEEEEEE--CTTSSSEE--EEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC
T ss_pred ceEEEEEEECCCCEEEE--eCCCCEEE--EEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCCCCCEEEEEEEEEeee
Confidence 35778898887533332 33222433 344444321 12599999999998764 36676666665 46677
Q ss_pred eC
Q psy15132 129 FQ 130 (786)
Q Consensus 129 f~ 130 (786)
|.
T Consensus 88 y~ 89 (108)
T 3koj_A 88 LL 89 (108)
T ss_dssp --
T ss_pred EE
Confidence 74
No 125
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=42.42 E-value=11 Score=30.21 Aligned_cols=28 Identities=18% Similarity=0.475 Sum_probs=21.6
Q ss_pred EeCCCCCCCCccee-eCCCceeecccCCCcC
Q psy15132 221 YKACPSQDCNKKVI-DQNNGMYRCEKCNKEF 250 (786)
Q Consensus 221 Y~aC~~~~C~kKv~-~~~~~~~~C~~C~~~~ 250 (786)
..+|| .|+..+. +...|...|+.|+..+
T Consensus 8 iL~CP--~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 8 ILVCP--VCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCBCT--TTCCBEEEETTTTEEEETTTTEEE
T ss_pred heECC--CCCCcCEEeCCCCEEEcCCCCcee
Confidence 45999 9999876 3345788999998754
No 126
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=41.52 E-value=67 Score=28.22 Aligned_cols=59 Identities=10% Similarity=0.202 Sum_probs=35.1
Q ss_pred eeEEEEEEEcccceeEEeecCCceeeEEEEEEeec-----ccc------EEEEEEecccccccc-CCCCCEEEEEe
Q psy15132 577 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ-----SQA------SVTMTLWGKEAETFD-ASNKPVIAVKA 640 (786)
Q Consensus 577 vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~-----s~~------~i~~tLWg~~a~~~~-~~~~~vv~i~~ 640 (786)
|-++|.++.--++.. + . +|..+. ++.|.-. .|. .|.|++||+.|+.+. ...|.-|.+.|
T Consensus 4 viL~GrL~~dPelRy-T-p-sG~~V~--~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~~~l~kGs~V~VeG 74 (115)
T 3fhw_A 4 LELSARVLECGAMRH-T-P-AGLPAL--ELLLVHESEVVEAGHPRRVELTISAVALGDLALLLADTPLGTEMQVQG 74 (115)
T ss_dssp EEEEEEEEEECCCEE-C-T-TSCEEE--EEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHHTTCCTTCEEEEEE
T ss_pred EEEEEEECcCcceEE-C-C-CCCEEE--EEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhhhccCCCCEEEEEE
Confidence 456777777555542 2 2 354433 3333322 221 389999999998764 46777777765
No 127
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=41.41 E-value=11 Score=30.02 Aligned_cols=28 Identities=11% Similarity=0.229 Sum_probs=21.4
Q ss_pred EeCCCCCCCCcceee-CCCceeecccCCCcC
Q psy15132 221 YKACPSQDCNKKVID-QNNGMYRCEKCNKEF 250 (786)
Q Consensus 221 Y~aC~~~~C~kKv~~-~~~~~~~C~~C~~~~ 250 (786)
..+|| .|+..+.- ...+...|+.|+..+
T Consensus 8 iL~CP--~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 8 ILVCP--VTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCBCS--SSCCBCEEETTTTEEEETTTTEEE
T ss_pred heECC--CCCCcCeEeCCCCEEEcCCCCcEe
Confidence 35899 99998763 345788999998754
No 128
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=41.36 E-value=11 Score=30.04 Aligned_cols=28 Identities=18% Similarity=0.428 Sum_probs=21.7
Q ss_pred EeCCCCCCCCcceee-CCCceeecccCCCcC
Q psy15132 221 YKACPSQDCNKKVID-QNNGMYRCEKCNKEF 250 (786)
Q Consensus 221 Y~aC~~~~C~kKv~~-~~~~~~~C~~C~~~~ 250 (786)
..+|| .|+..+.- ...+...|+.|+..+
T Consensus 8 iL~CP--~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 8 ILVCP--LCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp ECBCT--TTCCBCEEETTTTEEEETTTTEEE
T ss_pred heECC--CCCCcCeEeCCCCEEEcCCCCcEe
Confidence 56999 99998763 346788999998754
No 129
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=40.34 E-value=47 Score=35.86 Aligned_cols=68 Identities=15% Similarity=0.305 Sum_probs=50.2
Q ss_pred eeecccCCCCCceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcch--hHHHhhhhccCCcEEEEcce
Q psy15132 443 HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFND--ECNRFHDMIEKDKVYYISNC 518 (786)
Q Consensus 443 ~~I~~L~p~~~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~--~~~kf~~~l~~G~vy~is~~ 518 (786)
.+|+++.||++ ..+++.|..+- +. ..|--.-|.|-|+.++|.+.+|.. ...+.-..|..|+.+.+.+.
T Consensus 276 ~~i~~~~~~~~-~~v~G~V~~~P--~~-----~~GGHV~f~l~d~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~ 345 (402)
T 3au7_A 276 EEVHRLENYRS-YRLRGRVTLEP--YD-----IEGGHVFFEIDTKFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGS 345 (402)
T ss_dssp GGCSSCCTTCE-EEEEEEEEEEE--EE-----ETTTEEEEEEEETTEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEE
T ss_pred ccccccccCce-EEEEEEEecCc--Ee-----ccCceEEEEEEcCCCEEEEEEEccchHHHHHHhcCCCCCEEEEEEe
Confidence 45899999875 56889988531 11 124446678889888999999994 45566677899999988876
No 130
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=40.12 E-value=11 Score=30.12 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=21.0
Q ss_pred eCCCCCCCCcceee-CCCceeecccCCCcC
Q psy15132 222 KACPSQDCNKKVID-QNNGMYRCEKCNKEF 250 (786)
Q Consensus 222 ~aC~~~~C~kKv~~-~~~~~~~C~~C~~~~ 250 (786)
.+|| .|+..+.- ...+...|+.|+..+
T Consensus 9 L~CP--~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 9 LACP--ICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp CCCT--TTCCCCEECTTSSEEEETTTTEEE
T ss_pred eeCC--CCCCcCeEeCCCCEEEcCCCCcEe
Confidence 5899 99998763 345788999998754
No 131
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=39.53 E-value=12 Score=29.74 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=21.4
Q ss_pred EeCCCCcccccccc-ccCCceeeeCCCCCcCC
Q psy15132 686 YKACPSQDCNKKVI-DQNNGMYRCEKCNKEFN 716 (786)
Q Consensus 686 Y~aC~~~~C~kkv~-~~~~g~~~C~~C~~~~~ 716 (786)
.-+|| .|+..+. +...|...|+.|+..+|
T Consensus 10 iL~CP--~ck~~L~~~~~~g~LvC~~c~~~YP 39 (67)
T 2jny_A 10 VLACP--KDKGPLRYLESEQLLVNERLNLAYR 39 (67)
T ss_dssp CCBCT--TTCCBCEEETTTTEEEETTTTEEEE
T ss_pred HhCCC--CCCCcCeEeCCCCEEEcCCCCcccc
Confidence 46899 6998874 23457788999987654
No 132
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=37.78 E-value=1.2e+02 Score=25.88 Aligned_cols=70 Identities=9% Similarity=0.018 Sum_probs=40.7
Q ss_pred eeeEEEEEEEcccceeEEeecCCceeeEEEEEE---eeccc------cEEEEEEecccccccc-CCCCCEEEEEeE-EEe
Q psy15132 576 NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITL---VDQSQ------ASVTMTLWGKEAETFD-ASNKPVIAVKAA-RVS 644 (786)
Q Consensus 576 ~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l---~D~s~------~~i~~tLWg~~a~~~~-~~~~~vv~i~~~-~V~ 644 (786)
.|-++|.+..--++.. + . +|.++..-.|-. .+++| ..++|++||+.|+ .. ...|.-|.+.|- +-+
T Consensus 9 kv~LiG~L~~dPelRy-t-p-~G~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae-~~~l~KG~~v~veGrL~~r 84 (103)
T 3k8a_A 9 LVSLAALIEKAFPIRY-T-P-AGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAE-EWQYRQGDCATVEGFLAQK 84 (103)
T ss_dssp EEEEEEEEEEECCCEE-C-T-TSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH-HSTTCTTCEEEEEEEEEES
T ss_pred EEEEEEEECCCCceEE-C-C-CCCEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh-hhccCCCCEEEEEEEEEEC
Confidence 3667777776555432 1 2 354433222221 01222 1389999999998 55 577888888763 445
Q ss_pred ecCCc
Q psy15132 645 EFQGN 649 (786)
Q Consensus 645 ~f~G~ 649 (786)
.|+|+
T Consensus 85 s~~~~ 89 (103)
T 3k8a_A 85 SRRSL 89 (103)
T ss_dssp SSSCC
T ss_pred ccCCc
Confidence 67765
No 133
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.20 E-value=18 Score=26.89 Aligned_cols=27 Identities=30% Similarity=0.748 Sum_probs=19.2
Q ss_pred EeCCCCCCCCccee-eCCCceeecccCCCc
Q psy15132 221 YKACPSQDCNKKVI-DQNNGMYRCEKCNKE 249 (786)
Q Consensus 221 Y~aC~~~~C~kKv~-~~~~~~~~C~~C~~~ 249 (786)
..-|| .|...+. .+..+.+.|.+|+-+
T Consensus 19 ~k~CP--~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 19 NKFCP--RCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp SEECS--SSCSSCEEEECSSEEECSSSCCE
T ss_pred cccCC--CCCCceEEecCCCeEECCCCCCE
Confidence 44699 8987432 234678999999865
No 134
>2oq0_A Gamma-interferon-inducible protein IFI-16; OB folds, beta-barrels, structural genomics, PSI-2, protein initiative; 2.00A {Homo sapiens} SCOP: b.40.16.1 b.40.16.1
Probab=36.18 E-value=3e+02 Score=26.42 Aligned_cols=163 Identities=10% Similarity=0.106 Sum_probs=109.6
Q ss_pred EEEEEEeecCCcceecCCC-CCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEEeccCCcccccCCce
Q psy15132 456 TIKARVTNKTPIREWNNAR-GSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDY 534 (786)
Q Consensus 456 ~I~~RV~~k~~~r~~~~~~-~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~~a~~~y~~~~~~y 534 (786)
...|-|+.-.+.+.|..+. +...+|+-+++-++---++.+|+-.+ .+.+...+++.||++.= +.-
T Consensus 17 p~~VmVLkat~pF~ye~~E~~k~~MFHATVATetqfF~VKVfn~~L---keKF~~k~iI~ISdY~~-----------~~g 82 (206)
T 2oq0_A 17 PVIVKVLSTTKPFEYETPEMEKKIMFHATVATQTQFFHVKVLNTSL---KEKFNGKKIIIISDYLE-----------YDS 82 (206)
T ss_dssp CEEEEEEEECCCEEEECCC--EEEEEEEEEECSSCEEEEEECCGGG---GGGGSSSSEEEEESBEE-----------ETT
T ss_pred ceEEEEEecccceEEechhcccceeEEEEEeecceeEEEEEeechh---hhhcccCceEEEEeecc-----------ccc
Confidence 3557777777888888765 33469999999999889999999864 45789999999999753 344
Q ss_pred EEEEccccEEEEccCCCCCCCCcce----eeccCcccccccCCCceeeEEEEEEEcccceeEEeecCCceeeEEEEEEee
Q psy15132 535 EMSFTHSTTVIPCNEDEVGNMPSVK----YCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVD 610 (786)
Q Consensus 535 ei~f~~~T~I~~~~d~~~~~iP~~~----~~f~~i~dl~~~~~~~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D 610 (786)
-|..++.+.|.++..+..-.+|.-. -.--+|++|.....+.+|.=+=.|.. |.-.+ ...-..|.|
T Consensus 83 ~lEv~~~ssVse~~~~q~~evp~~ii~~A~~TpKI~~L~~qa~Gt~V~GlF~v~k---------k~v~~--~~~~yeI~D 151 (206)
T 2oq0_A 83 LLEVNEESTVSEAGPNQTFEVPNKIINRAKETLKIDILHKQASGNIVYGVFMLHK---------KTVNQ--KTTIYEIQD 151 (206)
T ss_dssp EEEECTTCEEEECCGGGCCCCCHHHHHHHTCCCCHHHHTTSCTTCEEEEEEEEEE---------EEECS--SEEEEEEEE
T ss_pred eeeeeccceEEeccCCcceeccHHHHhhcccCccchhhhccCCccEEceEEEEEE---------Eeecc--ceEEEEEcc
Confidence 7888899999988644322455432 12235777777667777653322222 21111 133567899
Q ss_pred ccccEEEEEEeccccccccCCCCCEEEEEeEEEee
Q psy15132 611 QSQASVTMTLWGKEAETFDASNKPVIAVKAARVSE 645 (786)
Q Consensus 611 ~s~~~i~~tLWg~~a~~~~~~~~~vv~i~~~~V~~ 645 (786)
++| .++|..-|... .....+|+.+.+.-..++.
T Consensus 152 ~tG-~MeVvv~G~~~-~i~CeeGdkLrL~cF~L~~ 184 (206)
T 2oq0_A 152 DRG-KMDVVGTGQCH-NIPCEEGDKLQLFCFRLRK 184 (206)
T ss_dssp TTE-EEEEEEEGGGS-SCCCCTTCEEEEEEEEEEE
T ss_pred CCC-cEEEEEeCccc-ccccCCCCEEEEEEEEeec
Confidence 999 89999988654 3456778877655544443
No 135
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=35.83 E-value=15 Score=29.13 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=21.5
Q ss_pred EeCCCCCCCCccee-eCCCceeecccCCCcC
Q psy15132 221 YKACPSQDCNKKVI-DQNNGMYRCEKCNKEF 250 (786)
Q Consensus 221 Y~aC~~~~C~kKv~-~~~~~~~~C~~C~~~~ 250 (786)
..+|| .|+..+. ....|...|+.|+..+
T Consensus 10 iL~CP--~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 10 VLACP--KDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCBCT--TTCCBCEEETTTTEEEETTTTEEE
T ss_pred HhCCC--CCCCcCeEeCCCCEEEcCCCCccc
Confidence 35999 9999876 3346788999998764
No 136
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=35.51 E-value=20 Score=44.33 Aligned_cols=63 Identities=16% Similarity=0.264 Sum_probs=30.6
Q ss_pred ceEEEEEEeecCCcceecCCCCCceEEEEEEEcCCCcEEEEEcchhHHHhhhhccCCcEEEEcceEEe
Q psy15132 454 KWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLK 521 (786)
Q Consensus 454 ~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~D~~G~I~at~~~~~~~kf~~~l~~G~vy~is~~~V~ 521 (786)
...|.|-|+.....+ ..+| ..+.-++|-|++|.+.+++|.+..+++.+.|++|.++.+.+ +|.
T Consensus 1044 ~v~v~G~v~~~~~~~---Tk~G-~~maf~tleD~tg~~evvvf~~~~~~~~~~l~~~~~~~v~G-~v~ 1106 (1220)
T 2hpi_A 1044 KVLLSGMVEEVVRKP---TRSG-GMMARFTLSDETGALEVVVFGRAYEGVSPKLKEDIPLLVLA-EVE 1106 (1220)
T ss_dssp EEEEEEEECCC----------------CEEEEETTEEEEEC-------------CTTCEEEEEE-EEC
T ss_pred eEEEEEEEEEEEEee---cCCC-CeEEEEEEEECCCCEEEEEcHHHHHHHHHHhccCCEEEEEE-EEE
Confidence 356777777543322 2222 24566789999999999999999999999999999998865 553
No 137
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=35.30 E-value=1.3e+02 Score=25.58 Aligned_cols=60 Identities=10% Similarity=0.074 Sum_probs=35.6
Q ss_pred eeEEEEEEEcccceeEEeecCCceeeEEEEEEe---eccccE-------EEEEEecccccccc--CCCCCEEEEEe
Q psy15132 577 IDVLGVCIDAAELSSVTGKTNQKTYMKRDITLV---DQSQAS-------VTMTLWGKEAETFD--ASNKPVIAVKA 640 (786)
Q Consensus 577 vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~---D~s~~~-------i~~tLWg~~a~~~~--~~~~~vv~i~~ 640 (786)
|-++|.+..--++.. +. +|..+..-.|-.. ++++ - ++|++||+.|+.+. ...|.-|.+.|
T Consensus 5 v~L~G~l~~dpelR~--t~-~G~~v~~f~lA~~~~~~~~~-~~r~~~~~~~vv~~g~~Ae~~~~~l~KG~~V~V~G 76 (104)
T 1txy_A 5 LVLSGTVCRAPLRKV--SP-SGIPHCQFVLEHRSVQEEAG-FHRQAWCQMPVIVSGHENQAITHSITVGSRITVQG 76 (104)
T ss_dssp EEEEEEEEEEEEEEE--CT-TSCEEEEEEEEEEEEEEETT-EEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEEEE
T ss_pred EEEEEEECCCceEEE--CC-CCCEEEEEEEEEeCccccCC-ceeceeEEEEEEEEhHHHHHHHhhCCCCCEEEEEE
Confidence 567788776443331 12 3654433222221 1223 4 99999999998753 57788787766
No 138
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=34.62 E-value=1.3e+02 Score=27.05 Aligned_cols=62 Identities=10% Similarity=0.095 Sum_probs=35.9
Q ss_pred eeeEEEEEEEcccceeEEeecCCceeeEEEEEE---eeccc------cEEEEEEecccccccc--CCCCCEEEEEe
Q psy15132 576 NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITL---VDQSQ------ASVTMTLWGKEAETFD--ASNKPVIAVKA 640 (786)
Q Consensus 576 ~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l---~D~s~------~~i~~tLWg~~a~~~~--~~~~~vv~i~~ 640 (786)
.|-++|.+..--++.. +. +|..+..-.|-. .+++| .-|+|++||+.|+.+. ...|.-|.|.|
T Consensus 21 kViLiGrL~~DPElRy--Tp-sG~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~yl~KGs~V~VeG 93 (134)
T 1v1q_A 21 RLVLSGTVCRAPLRKV--SP-SGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQG 93 (134)
T ss_dssp EEEEEEEEEEEEEEEE--CT-TCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEE
T ss_pred EEEEEEEECcCCceEE--CC-CCCEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHhcCCCCEEEEEE
Confidence 3667777776443332 12 355433222211 12233 1389999999999864 47788777765
No 139
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=34.34 E-value=17 Score=32.45 Aligned_cols=28 Identities=25% Similarity=0.816 Sum_probs=23.1
Q ss_pred EeCCCCccccccccccCCceeeeCCCCCcC
Q psy15132 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEF 715 (786)
Q Consensus 686 Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~~ 715 (786)
.|.|| .|+.--+-+++..|.|+.|+..+
T Consensus 27 lP~CP--~C~seytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 27 LPPCP--QCNSEYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp SCCCT--TTCCCCCEECSSSEEETTTTEEE
T ss_pred CCCCC--CCCCcceEecCCeEECCcccccc
Confidence 69999 79997666667789999998765
No 140
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=33.28 E-value=16 Score=32.68 Aligned_cols=27 Identities=26% Similarity=0.802 Sum_probs=22.7
Q ss_pred EeCCCCCCCCcceeeCCCceeecccCCCc
Q psy15132 221 YKACPSQDCNKKVIDQNNGMYRCEKCNKE 249 (786)
Q Consensus 221 Y~aC~~~~C~kKv~~~~~~~~~C~~C~~~ 249 (786)
.|.|| +|+.--+-+++..|-|+.|.-.
T Consensus 27 lP~CP--~C~seytYeDg~l~vCPeC~hE 53 (138)
T 2akl_A 27 LPPCP--QCNSEYTYEDGALLVCPECAHE 53 (138)
T ss_dssp SCCCT--TTCCCCCEECSSSEEETTTTEE
T ss_pred CCCCC--CCCCcceEecCCeEECCccccc
Confidence 58999 9999877667779999999753
No 141
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=29.36 E-value=1.2e+02 Score=26.20 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=38.9
Q ss_pred eeeEEEEEEEcccceeEEeecCCceeeEEEEEEee----ccc----cEEEEEEecccccccc--CCCCCEEEEEe-EEEe
Q psy15132 576 NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVD----QSQ----ASVTMTLWGKEAETFD--ASNKPVIAVKA-ARVS 644 (786)
Q Consensus 576 ~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D----~s~----~~i~~tLWg~~a~~~~--~~~~~vv~i~~-~~V~ 644 (786)
.|-++|.|..- +..-.+. +|..+..-.|-.-. ..| .-++|++||+.|+.+. ...|..|.+.| .+.+
T Consensus 7 ~v~l~G~l~~d--pe~r~t~-~G~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~~ 83 (116)
T 3vdy_A 7 QVMLVGRLTKD--PDLRYTS-AGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR 83 (116)
T ss_dssp CEEEEEEESSC--CEEEECT-TSCEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEE
T ss_pred EEEEEEEEccC--cEEEECC-CCCEEEEEEEEEeccccCCCCccccEEEEEEEECHHHHHHHHhCCCCCEEEEEEEEEee
Confidence 36678887652 2221222 36554433333321 112 2599999999998764 57788777765 3444
Q ss_pred ec
Q psy15132 645 EF 646 (786)
Q Consensus 645 ~f 646 (786)
.|
T Consensus 84 ~~ 85 (116)
T 3vdy_A 84 SY 85 (116)
T ss_dssp EE
T ss_pred EE
Confidence 45
No 142
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=29.28 E-value=23 Score=29.97 Aligned_cols=25 Identities=32% Similarity=0.810 Sum_probs=15.9
Q ss_pred eCCCCCCCCcceeeCCCceeecccCCCc
Q psy15132 222 KACPSQDCNKKVIDQNNGMYRCEKCNKE 249 (786)
Q Consensus 222 ~aC~~~~C~kKv~~~~~~~~~C~~C~~~ 249 (786)
.-|| .|..-+... ++.|.|+.|+++
T Consensus 33 ~~CP--~Cq~eL~~~-g~~~hC~~C~~~ 57 (101)
T 2jne_A 33 LHCP--QCQHVLDQD-NGHARCRSCGEF 57 (101)
T ss_dssp CBCS--SSCSBEEEE-TTEEEETTTCCE
T ss_pred ccCc--cCCCcceec-CCEEECccccch
Confidence 3577 777777653 445667777764
No 143
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=28.81 E-value=29 Score=26.51 Aligned_cols=28 Identities=21% Similarity=0.478 Sum_probs=20.2
Q ss_pred eCCCCccccc-cc-cccCCceeeeCCCCCcCC
Q psy15132 687 KACPSQDCNK-KV-IDQNNGMYRCEKCNKEFN 716 (786)
Q Consensus 687 ~aC~~~~C~k-kv-~~~~~g~~~C~~C~~~~~ 716 (786)
..|| .|+. .+ .+...|.+.|..||-.+.
T Consensus 12 ~~Cp--~C~~~~lv~D~~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 12 VTCP--NHPDAILVEDYRAGDMICPECGLVVG 41 (58)
T ss_dssp CSBT--TBSSSCCEECSSSCCEECTTTCCEEC
T ss_pred ccCc--CCCCCceeEeCCCCeEEeCCCCCEEe
Confidence 3699 6976 34 344568899999998654
No 144
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=28.45 E-value=25 Score=26.70 Aligned_cols=28 Identities=21% Similarity=0.686 Sum_probs=21.2
Q ss_pred EeCCCCccccccccccCCceeeeC--CCCCcCC
Q psy15132 686 YKACPSQDCNKKVIDQNNGMYRCE--KCNKEFN 716 (786)
Q Consensus 686 Y~aC~~~~C~kkv~~~~~g~~~C~--~C~~~~~ 716 (786)
.-+|| .|+..+... .|...|+ .|+..++
T Consensus 10 iL~CP--~c~~~L~~~-~~~L~C~~~~c~~~YP 39 (56)
T 2kpi_A 10 ILACP--ACHAPLEER-DAELICTGQDCGLAYP 39 (56)
T ss_dssp SCCCS--SSCSCEEEE-TTEEEECSSSCCCEEE
T ss_pred heeCC--CCCCcceec-CCEEEcCCcCCCcEEe
Confidence 46999 699987543 4788899 8988653
No 145
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=28.27 E-value=45 Score=41.31 Aligned_cols=74 Identities=14% Similarity=0.243 Sum_probs=38.5
Q ss_pred ccCcccccc----cCCCceeeEEEEEEEcccceeEEeecCCceeeEEEEEEeeccccEEEEEEecccccccc--CCCCCE
Q psy15132 562 FVPLKTIAE----ISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFD--ASNKPV 635 (786)
Q Consensus 562 f~~i~dl~~----~~~~~~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~D~s~~~i~~tLWg~~a~~~~--~~~~~v 635 (786)
.+++.+|.. ...+..|-|.|+|+.+.... +|+ |+. .--++|.|.+| .+++++|.+..+.+. ...+.+
T Consensus 1026 ~~~~~~l~~~~~~~~~g~~v~v~G~v~~~~~~~---Tk~-G~~--maf~tleD~tg-~~evvvf~~~~~~~~~~l~~~~~ 1098 (1220)
T 2hpi_A 1026 SCTIEELSEFVRELPGKPKVLLSGMVEEVVRKP---TRS-GGM--MARFTLSDETG-ALEVVVFGRAYEGVSPKLKEDIP 1098 (1220)
T ss_dssp SSCTTTHHHHHSSSSSSCEEEEEEEECCC------------------CEEEEETTE-EEEEC-------------CTTCE
T ss_pred CccHHHHhhhhhhccCCCeEEEEEEEEEEEEee---cCC-CCe--EEEEEEEECCC-CEEEEEcHHHHHHHHHHhccCCE
Confidence 346777753 23566688999999876543 343 542 34589999999 799999999777665 456777
Q ss_pred EEEEeEEE
Q psy15132 636 IAVKAARV 643 (786)
Q Consensus 636 v~i~~~~V 643 (786)
+.++| +|
T Consensus 1099 ~~v~G-~v 1105 (1220)
T 2hpi_A 1099 LLVLA-EV 1105 (1220)
T ss_dssp EEEEE-EE
T ss_pred EEEEE-EE
Confidence 77776 55
No 146
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=28.10 E-value=27 Score=26.73 Aligned_cols=27 Identities=22% Similarity=0.588 Sum_probs=19.9
Q ss_pred CCCCCCCCc-cee-eCCCceeecccCCCcCC
Q psy15132 223 ACPSQDCNK-KVI-DQNNGMYRCEKCNKEFN 251 (786)
Q Consensus 223 aC~~~~C~k-Kv~-~~~~~~~~C~~C~~~~~ 251 (786)
.|| .|+. .+. +...|.+.|..|+..+.
T Consensus 13 ~Cp--~C~~~~lv~D~~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 13 TCP--NHPDAILVEDYRAGDMICPECGLVVG 41 (58)
T ss_dssp SBT--TBSSSCCEECSSSCCEECTTTCCEEC
T ss_pred cCc--CCCCCceeEeCCCCeEEeCCCCCEEe
Confidence 699 8976 343 44567899999997653
No 147
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=26.81 E-value=29 Score=28.55 Aligned_cols=20 Identities=30% Similarity=0.675 Sum_probs=8.2
Q ss_pred CCCcceeeCCCceeecccCCC
Q psy15132 228 DCNKKVIDQNNGMYRCEKCNK 248 (786)
Q Consensus 228 ~C~kKv~~~~~~~~~C~~C~~ 248 (786)
.|..-+.. +++.+.|+.|++
T Consensus 7 ~C~~~l~~-~~~~~~C~~C~~ 26 (81)
T 2jrp_A 7 VCHHALER-NGDTAHCETCAK 26 (81)
T ss_dssp SSCSCCEE-CSSEEECTTTCC
T ss_pred CCCCcccc-CCCceECccccc
Confidence 44444433 222344444444
No 148
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=26.58 E-value=50 Score=27.52 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=25.0
Q ss_pred EEEEecCCcEEEEeehHHHHHHhCCChhhhhcc
Q psy15132 261 VMIGDWTNSVWVTLFQNEAESILGVTAQEVGES 293 (786)
Q Consensus 261 ~~v~D~Tg~~~~~~F~~~a~~ilg~sa~el~~~ 293 (786)
+.+.|..|. +..++..|++|+|.+++|+...
T Consensus 6 i~~~d~~g~--i~~~N~a~~~l~G~~~~el~G~ 36 (119)
T 2vv6_A 6 MIVIDGHGI--IQLFSTAAERLFGWSELEAIGQ 36 (119)
T ss_dssp EEEEETTSB--EEEECHHHHHHHCCCHHHHTTS
T ss_pred EEEECCCCe--EEEEhHHHHHHhCCCHHHHcCC
Confidence 345688875 5779999999999999998653
No 149
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=25.43 E-value=1.3e+02 Score=26.86 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=24.0
Q ss_pred EEEEEeccccccccc--CCCCcEEEEEe-EEEeeeC
Q psy15132 98 SVTMTLWGKEAETFD--ASNKPVIAVKA-ARVSEFQ 130 (786)
Q Consensus 98 ~i~~tLWg~~a~~~~--~~~~~Vi~i~~-~kv~~f~ 130 (786)
-+.|++||+.|+.+. ...|..|.+.| .+...|.
T Consensus 50 ~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~~~~~~ 85 (134)
T 2vw9_A 50 FIDARLFGRTAEIANQYLSKGSSVLIEGRLTYESWM 85 (134)
T ss_dssp EEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEE
T ss_pred EEEEEEEcHHHHHHHHhCCCCCEEEEEEEEEeeeEE
Confidence 599999999998764 35666666655 4666774
No 150
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=25.27 E-value=22 Score=29.12 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=26.1
Q ss_pred ceEEeCCCCccccccccccCCceeeeCCCCCcCCceeEEEEEEEEEEecCCcEEE
Q psy15132 683 NTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWV 737 (786)
Q Consensus 683 ~~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~i~D~Tg~~~~ 737 (786)
.-|-..|- .|.+-.. +....+|++||...- .++.+.+.++ |++.+
T Consensus 12 k~~iLrC~--aCf~~t~--~~~k~FCp~CGn~TL-----~Rvsvsvd~~-G~~~~ 56 (79)
T 2con_A 12 RSYILRCH--GCFKTTS--DMNRVFCGHCGNKTL-----KKVSVTINDD-GTLHM 56 (79)
T ss_dssp CCEEEECS--SSCCEES--CSSCCSCSSSCCSCC-----EEEECBCCSS-CCCBC
T ss_pred eeeeeEec--ccceECC--CcccccccccCcccc-----eEEEEEECCC-CcEEE
Confidence 34556677 5988543 234556999998532 2445555443 76543
No 151
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=25.26 E-value=27 Score=35.74 Aligned_cols=25 Identities=20% Similarity=0.735 Sum_probs=19.0
Q ss_pred eCCCCCCCCcceee---CCCceeecccCCC
Q psy15132 222 KACPSQDCNKKVID---QNNGMYRCEKCNK 248 (786)
Q Consensus 222 ~aC~~~~C~kKv~~---~~~~~~~C~~C~~ 248 (786)
..|+ .|+..+.. .+-+.|||+.|++
T Consensus 246 ~pC~--~CG~~I~~~~~~gR~t~~CP~CQ~ 273 (273)
T 3u6p_A 246 NPCK--RCGTPIEKTVVAGRGTHYCPRCQR 273 (273)
T ss_dssp SBCT--TTCCBCEEEEETTEEEEECTTTCC
T ss_pred CCCC--CCCCeEEEEEECCCCeEECCCCCC
Confidence 5799 99987753 2345899999974
No 152
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=25.18 E-value=1.1e+02 Score=28.45 Aligned_cols=68 Identities=12% Similarity=0.171 Sum_probs=39.0
Q ss_pred eeeEEEEEEEcccceeEEeecCCceeeEEEEEE----eec-cc------cEEEEEEecccccccc--CCCCCEEEEEe-E
Q psy15132 576 NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITL----VDQ-SQ------ASVTMTLWGKEAETFD--ASNKPVIAVKA-A 641 (786)
Q Consensus 576 ~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l----~D~-s~------~~i~~tLWg~~a~~~~--~~~~~vv~i~~-~ 641 (786)
.|-++|.|..--++. .+. +|+.+..-.|-. .|. +| .-+.|++||+.|+.+. ...|..|.+.| .
T Consensus 10 ~V~LiGrL~~dPelr--~t~-~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeG~L 86 (158)
T 3tqy_A 10 KVILIGNLGQDPEVR--YTP-NGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEYLRKGSKIYIEGSL 86 (158)
T ss_dssp EEEEEEEESSSCEEE--ECT-TCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHHCCTTCEEEEEEEE
T ss_pred EEEEEEEECCCCEEE--ECC-CCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhhcCCCCEEEEEEEE
Confidence 366778776532222 222 355543333322 232 33 2489999999998664 57888777765 3
Q ss_pred EEeec
Q psy15132 642 RVSEF 646 (786)
Q Consensus 642 ~V~~f 646 (786)
+.+.|
T Consensus 87 ~~~~~ 91 (158)
T 3tqy_A 87 RTRKW 91 (158)
T ss_dssp EEEEE
T ss_pred EeeeE
Confidence 44555
No 153
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=25.18 E-value=32 Score=35.05 Aligned_cols=25 Identities=28% Similarity=0.729 Sum_probs=19.4
Q ss_pred eCCCCCCCCcceee---CCCceeecccCCC
Q psy15132 222 KACPSQDCNKKVID---QNNGMYRCEKCNK 248 (786)
Q Consensus 222 ~aC~~~~C~kKv~~---~~~~~~~C~~C~~ 248 (786)
..|+ .|+..+.. .+-+.|||+.|++
T Consensus 236 ~pC~--~CG~~I~~~~~~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 236 LPCP--ACGRPVERRVVAGRGTHFCPTCQG 263 (266)
T ss_dssp SBCT--TTCCBCEEEESSSCEEEECTTTTT
T ss_pred CCCC--CCCCEeeEEEECCCceEECCCCCC
Confidence 5699 99987653 2345899999986
No 154
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=24.53 E-value=67 Score=26.67 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=24.1
Q ss_pred EEEEecCCcEEEEEehhhHHHHhCCChHHHh
Q psy15132 726 VMIGDWTNSVWVTLFQNEAESILGVTAQEVG 756 (786)
Q Consensus 726 ~~i~D~Tg~~~~~~F~~~ae~llG~sa~el~ 756 (786)
+.+.|..|. ++.++..+++|+|.+++|+.
T Consensus 6 i~~~d~~g~--i~~~N~a~~~l~G~~~~el~ 34 (119)
T 2vv6_A 6 MIVIDGHGI--IQLFSTAAERLFGWSELEAI 34 (119)
T ss_dssp EEEEETTSB--EEEECHHHHHHHCCCHHHHT
T ss_pred EEEECCCCe--EEEEhHHHHHHhCCCHHHHc
Confidence 356787775 57799999999999999985
No 155
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=24.27 E-value=19 Score=26.64 Aligned_cols=8 Identities=25% Similarity=1.186 Sum_probs=3.9
Q ss_pred eeecccCC
Q psy15132 240 MYRCEKCN 247 (786)
Q Consensus 240 ~~~C~~C~ 247 (786)
.|.|.+|+
T Consensus 11 ~WkC~~C~ 18 (53)
T 2cr8_A 11 EWQCTECK 18 (53)
T ss_dssp CEECSSSC
T ss_pred eeeccccc
Confidence 34555554
No 156
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=23.64 E-value=30 Score=35.25 Aligned_cols=28 Identities=21% Similarity=0.799 Sum_probs=20.7
Q ss_pred eEE----eCCCCCCCCcceee---CCCceeecccCCC
Q psy15132 219 TTY----KACPSQDCNKKVID---QNNGMYRCEKCNK 248 (786)
Q Consensus 219 ~~Y----~aC~~~~C~kKv~~---~~~~~~~C~~C~~ 248 (786)
|.| ..|+ .|+..+.. .+-+.|||+.|++
T Consensus 234 ~VygR~g~pC~--~CG~~I~~~~~~gR~t~~CP~CQ~ 268 (268)
T 1k82_A 234 QVYGRKGEPCR--VCGTPIVATKHAQRATFYCRQCQK 268 (268)
T ss_dssp SSTTCTTSBCT--TTCCBCEEEEETTEEEEECTTTCC
T ss_pred EEcccCCCCCC--CCCCEeeEEEECCCceEECCCCCC
Confidence 557 5699 99987753 2345899999974
No 157
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.58 E-value=31 Score=25.22 Aligned_cols=14 Identities=36% Similarity=0.959 Sum_probs=10.2
Q ss_pred CCceeeeCCCCCcC
Q psy15132 702 NNGMYRCEKCNKEF 715 (786)
Q Consensus 702 ~~g~~~C~~C~~~~ 715 (786)
+.+.|.|++|+..+
T Consensus 9 ~~~~~~CPrCn~~f 22 (49)
T 2e72_A 9 DGGRKICPRCNAQF 22 (49)
T ss_dssp CSSCCCCTTTCCCC
T ss_pred cCCceeCCcccccc
Confidence 34678888888764
No 158
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=23.55 E-value=31 Score=35.27 Aligned_cols=28 Identities=21% Similarity=0.699 Sum_probs=20.9
Q ss_pred eEE----eCCCCCCCCcceee---CCCceeecccCCC
Q psy15132 219 TTY----KACPSQDCNKKVID---QNNGMYRCEKCNK 248 (786)
Q Consensus 219 ~~Y----~aC~~~~C~kKv~~---~~~~~~~C~~C~~ 248 (786)
|.| ..|+ .|+..+.. .+-+.|+|+.|++
T Consensus 236 ~VygR~G~pC~--~CG~~I~~~~~~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 236 QVYGKTGEKCS--RCGAEIQKIKVAGRGTHFCPVCQQ 270 (271)
T ss_dssp SSTTCTTSBCT--TTCCBCEEEEETTEEEEECTTTSC
T ss_pred EEccCCCCCCC--CCCCEeeEEEECCCceEECCCCCC
Confidence 557 5699 99987653 2345899999985
No 159
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=23.31 E-value=31 Score=35.04 Aligned_cols=24 Identities=21% Similarity=0.724 Sum_probs=18.1
Q ss_pred CCCCCCCCcceee---CCCceeecccCCC
Q psy15132 223 ACPSQDCNKKVID---QNNGMYRCEKCNK 248 (786)
Q Consensus 223 aC~~~~C~kKv~~---~~~~~~~C~~C~~ 248 (786)
.|+ .|+..+.. .+-+.|+|+.|++
T Consensus 236 pC~--~CG~~I~~~~~~gR~t~~CP~CQ~ 262 (262)
T 1k3x_A 236 PCE--RCGSIIEKTTLSSRPFYWCPGCQH 262 (262)
T ss_dssp BCT--TTCCBCEEEEETTEEEEECTTTCC
T ss_pred CCC--CCCCEeEEEEECCCCeEECCCCCC
Confidence 599 99987653 2345899999974
No 160
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=23.04 E-value=36 Score=25.82 Aligned_cols=27 Identities=22% Similarity=0.722 Sum_probs=20.9
Q ss_pred EeCCCCCCCCcceeeCCCceeecc--cCCCcC
Q psy15132 221 YKACPSQDCNKKVIDQNNGMYRCE--KCNKEF 250 (786)
Q Consensus 221 Y~aC~~~~C~kKv~~~~~~~~~C~--~C~~~~ 250 (786)
..+|| .|+..+... .+...|+ .|+..+
T Consensus 10 iL~CP--~c~~~L~~~-~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 10 ILACP--ACHAPLEER-DAELICTGQDCGLAY 38 (56)
T ss_dssp SCCCS--SSCSCEEEE-TTEEEECSSSCCCEE
T ss_pred heeCC--CCCCcceec-CCEEEcCCcCCCcEE
Confidence 45999 999998643 3778999 898754
No 161
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=22.41 E-value=34 Score=28.95 Aligned_cols=26 Identities=31% Similarity=0.761 Sum_probs=18.4
Q ss_pred EeCCCCccccccccccCCceeeeCCCCCc
Q psy15132 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKE 714 (786)
Q Consensus 686 Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~ 714 (786)
-.-|| .|..-+.. .+|.|.|+.|++.
T Consensus 32 ~~~CP--~Cq~eL~~-~g~~~hC~~C~~~ 57 (101)
T 2jne_A 32 ELHCP--QCQHVLDQ-DNGHARCRSCGEF 57 (101)
T ss_dssp CCBCS--SSCSBEEE-ETTEEEETTTCCE
T ss_pred cccCc--cCCCccee-cCCEEECccccch
Confidence 36788 68887653 4566778888875
No 162
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=21.98 E-value=1.9e+02 Score=27.92 Aligned_cols=68 Identities=19% Similarity=0.272 Sum_probs=38.8
Q ss_pred eeeEEEEEEEcccceeEEeecCCceeeEEEEEEe----e--------ccccEEEEEEecccccccc--CCCCCEEEEEe-
Q psy15132 576 NIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLV----D--------QSQASVTMTLWGKEAETFD--ASNKPVIAVKA- 640 (786)
Q Consensus 576 ~vDViGvV~~V~~~~~i~~k~~g~~~~kr~i~l~----D--------~s~~~i~~tLWg~~a~~~~--~~~~~vv~i~~- 640 (786)
.|-++|.|..--++. .+. +|+.+.+-.|-.- | ..-.-++|++|++.|+.+. ...+..|.|.+
T Consensus 6 ~V~LiGrL~~DPElR--~T~-~G~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~L~KG~~V~VeGr 82 (199)
T 3eiv_A 6 VITVVGNLVDDPELR--FTP-SGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQGR 82 (199)
T ss_dssp EEEEEEEESSCCEEE--ECT-TCCEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEE
T ss_pred EEEEEEEECCCCeEE--ECC-CCCEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHhcCCCCEEEEEEE
Confidence 567788876532222 222 3555444333331 1 1122599999999998764 57787777765
Q ss_pred EEEeec
Q psy15132 641 ARVSEF 646 (786)
Q Consensus 641 ~~V~~f 646 (786)
.+.+.|
T Consensus 83 L~~rsw 88 (199)
T 3eiv_A 83 LKQRSY 88 (199)
T ss_dssp EEEEC-
T ss_pred EEeeEE
Confidence 445555
No 163
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=21.87 E-value=2.3e+02 Score=28.45 Aligned_cols=64 Identities=13% Similarity=0.154 Sum_probs=47.5
Q ss_pred CceEEEEEEeecCCcceecCCCCCceEEEEEEE------cCC-C------c-EEEEEcchh--HHHhhhhccCCcEEEEc
Q psy15132 453 NKWTIKARVTNKTPIREWNNARGSGKLFSIDLL------DES-G------E-IRATMFNDE--CNRFHDMIEKDKVYYIS 516 (786)
Q Consensus 453 ~~w~I~~RV~~k~~~r~~~~~~~~g~~~~~~L~------D~~-G------~-I~at~~~~~--~~kf~~~l~~G~vy~is 516 (786)
++..|.||+ +--++|... | ..+.+|.|+ |.+ + + +++++|+.. ++ +...|+.|+-++|.
T Consensus 147 NkV~LiGrL-~DPElR~t~---G-~~Va~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AE-i~~~L~KG~~V~Ve 220 (257)
T 4dni_A 147 NSVTLVGVV-HDIQSGFVY---E-DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAE-VKQKVKEGNVVCVN 220 (257)
T ss_dssp EEEEEEEEE-EEEEEEEET---T-EEEEEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHH-HHHHCCTTCEEEEE
T ss_pred CEEEEEEEc-CCCEEEEeC---C-cEEEEEEEEECCCccCCCCceEccceEEEEEEEECCccHHH-HHhhCCCCCEEEEE
Confidence 678999999 888888763 2 366677664 222 2 2 999999998 88 88889999999998
Q ss_pred c-eEEec
Q psy15132 517 N-CTLKP 522 (786)
Q Consensus 517 ~-~~V~~ 522 (786)
+ .+.+.
T Consensus 221 GrL~tr~ 227 (257)
T 4dni_A 221 GRLRLSP 227 (257)
T ss_dssp EEEEEEE
T ss_pred EEEEeee
Confidence 7 44443
No 164
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=21.37 E-value=37 Score=27.86 Aligned_cols=6 Identities=33% Similarity=1.375 Sum_probs=2.7
Q ss_pred eCCCCC
Q psy15132 708 CEKCNK 713 (786)
Q Consensus 708 C~~C~~ 713 (786)
|+.|++
T Consensus 34 CPeCgq 39 (81)
T 2jrp_A 34 CPDCRQ 39 (81)
T ss_dssp CSSSCS
T ss_pred Ccchhh
Confidence 444444
No 165
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=21.36 E-value=55 Score=26.96 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=23.7
Q ss_pred EEEecC-CcEEEEeehHHHHHHhCCChhhhhcc
Q psy15132 262 MIGDWT-NSVWVTLFQNEAESILGVTAQEVGES 293 (786)
Q Consensus 262 ~v~D~T-g~~~~~~F~~~a~~ilg~sa~el~~~ 293 (786)
.+.|.. |. +..++..|++|||.+.+|+...
T Consensus 12 ~~~d~~~g~--I~~~N~aa~~l~G~~~~el~g~ 42 (114)
T 1ll8_A 12 FTVDAKTTE--ILVANDKACGLLGYSSQDLIGQ 42 (114)
T ss_dssp EEEETTTCB--EEEECTTHHHHHTCCTTTTTTS
T ss_pred EEEECCCCe--EEEehHHHHHHhCCCHHHHcCC
Confidence 356765 75 5678999999999999998653
No 166
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=21.33 E-value=71 Score=27.07 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=24.5
Q ss_pred EEEecCCcEEEEeehHHHHHHhCCChhhhhcc
Q psy15132 262 MIGDWTNSVWVTLFQNEAESILGVTAQEVGES 293 (786)
Q Consensus 262 ~v~D~Tg~~~~~~F~~~a~~ilg~sa~el~~~ 293 (786)
.+.|..|. ++.++..|++|+|.+++|+...
T Consensus 30 ~~~d~~g~--i~~~N~a~~~l~Gy~~~eliG~ 59 (130)
T 1d06_A 30 VVSATDGT--IVSFNAAAVRQFGYAEEEVIGQ 59 (130)
T ss_dssp EEEETTSB--EEEECHHHHHHHCCCHHHHTTS
T ss_pred EEECCCCe--EEEEcHHHHHHHCCCHHHHcCC
Confidence 45688876 4679999999999999998653
No 167
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=21.13 E-value=47 Score=25.09 Aligned_cols=26 Identities=27% Similarity=0.836 Sum_probs=18.4
Q ss_pred eCCCCCCCCccee-eCCCceeecccCCCc
Q psy15132 222 KACPSQDCNKKVI-DQNNGMYRCEKCNKE 249 (786)
Q Consensus 222 ~aC~~~~C~kKv~-~~~~~~~~C~~C~~~ 249 (786)
.-|| .|+--+. ....+.|.|.+|+-+
T Consensus 19 ~fCP--kCG~~~~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 19 RFCP--RCGPGVFLAEHADRYSCGRCGYT 45 (55)
T ss_dssp CCCT--TTTTTCCCEECSSEEECTTTCCC
T ss_pred ccCc--CCCCceeEeccCCEEECCCCCCE
Confidence 4699 8987443 234568999999865
Done!