Your job contains 1 sequence.
>psy15132
MLAAPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI
DVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIA
VKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFSTQTNTRFEPVSQRTGGMGGG
AAGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGM
YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPAL
KKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKR
YIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKIGNPQPLNTNTDNSSTQQTPAATNTN
GSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLF
SIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTH
STTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKT
YMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQ
LGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTY
RLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPALKKALFTQYIFRLRAK
LEHYNK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15132
(786 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0010173 - symbol:RpA-70 "Replication Protein A 70"... 769 2.4e-110 2
RGD|1307376 - symbol:Rpa1 "replication protein A1" specie... 565 5.0e-104 3
MGI|MGI:1915525 - symbol:Rpa1 "replication protein A1" sp... 665 1.2e-100 3
POMBASE|SPBC660.13c - symbol:ssb1 "DNA replication factor... 554 3.2e-81 2
ASPGD|ASPL0000065893 - symbol:AN7423 species:162425 "Emer... 564 4.1e-75 2
UNIPROTKB|I3LSJ9 - symbol:I3LSJ9 "Uncharacterized protein... 573 1.8e-74 2
UNIPROTKB|E2R436 - symbol:RPA1 "Uncharacterized protein" ... 666 5.3e-69 2
UNIPROTKB|P27694 - symbol:RPA1 "Replication protein A 70 ... 669 4.7e-68 2
UNIPROTKB|Q0VCV0 - symbol:RPA1 "Replication protein A1, 7... 655 4.2e-67 2
UNIPROTKB|Q5ZJJ2 - symbol:RPA1 "Replication protein A 70 ... 662 5.4e-67 2
UNIPROTKB|F1RHH4 - symbol:RPA1 "Uncharacterized protein" ... 660 8.7e-67 2
UNIPROTKB|I3LHB2 - symbol:RPA1 "Uncharacterized protein" ... 660 1.4e-66 2
ZFIN|ZDB-GENE-030912-3 - symbol:rpa1 "replication protein... 642 6.9e-63 1
SGD|S000000065 - symbol:RFA1 "Subunit of heterotrimeric R... 465 2.8e-61 3
TAIR|locus:2163553 - symbol:RPA70C species:3702 "Arabidop... 418 4.4e-58 3
TAIR|locus:2134766 - symbol:AT4G19130 species:3702 "Arabi... 424 1.4e-57 3
CGD|CAL0004564 - symbol:RFA1 species:5476 "Candida albica... 426 2.8e-56 2
UNIPROTKB|Q65XV7 - symbol:P0016H04.11 "Os05g0111000 prote... 402 6.2e-53 3
TAIR|locus:2142808 - symbol:RPA70B "RPA70-kDa subunit B" ... 452 3.8e-42 1
TAIR|locus:2173527 - symbol:RPA70D species:3702 "Arabidop... 451 2.4e-41 2
UNIPROTKB|Q9AVL8 - symbol:OsRPA70a "Replication protein A... 456 4.8e-41 1
TAIR|locus:2054577 - symbol:RPA1A "replication protein A ... 423 4.2e-40 2
WB|WBGene00017546 - symbol:rpa-1 species:6239 "Caenorhabd... 377 3.8e-37 2
UNIPROTKB|Q19537 - symbol:rpa-1 "Probable replication fac... 377 3.8e-37 2
GENEDB_PFALCIPARUM|PFD0470c - symbol:PFD0470c "replicatio... 352 3.9e-34 2
UNIPROTKB|Q9U0J0 - symbol:PFD0470c "Replication factor a ... 352 3.9e-34 2
DICTYBASE|DDB_G0289513 - symbol:rfa1 "putative replicatio... 308 2.4e-25 2
UNIPROTKB|I3L2M5 - symbol:RPA1 "Replication protein A 70 ... 146 4.1e-09 1
UNIPROTKB|I3L524 - symbol:RPA1 "Replication protein A 70 ... 145 5.3e-09 1
TAIR|locus:2011521 - symbol:AT1G52950 "AT1G52950" species... 113 3.4e-06 2
WB|WBGene00019858 - symbol:R03H10.6 species:6239 "Caenorh... 135 3.4e-05 2
>FB|FBgn0010173 [details] [associations]
symbol:RpA-70 "Replication Protein A 70" species:7227
"Drosophila melanogaster" [GO:0003697 "single-stranded DNA binding"
evidence=NAS;IDA] [GO:0006261 "DNA-dependent DNA replication"
evidence=NAS;IDA] [GO:0005662 "DNA replication factor A complex"
evidence=NAS;IDA] [GO:0005634 "nucleus" evidence=NAS;IDA]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0048812 "neuron projection morphogenesis" evidence=IMP]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 EMBL:AE014297 GO:GO:0005875 GO:GO:0007095
GO:GO:0007052 GO:GO:0046872 GO:GO:0006261 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0005662
InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599
GeneTree:ENSGT00390000012403 KO:K07466 TIGRFAMs:TIGR00617
EMBL:Z70277 EMBL:AY069331 RefSeq:NP_524274.1 UniGene:Dm.2177
ProteinModelPortal:Q24492 SMR:Q24492 DIP:DIP-22335N IntAct:Q24492
MINT:MINT-747966 STRING:Q24492 PaxDb:Q24492 PRIDE:Q24492
EnsemblMetazoa:FBtr0081867 GeneID:40972 KEGG:dme:Dmel_CG9633
CTD:40972 FlyBase:FBgn0010173 InParanoid:Q24492 OMA:QNKWVIK
OrthoDB:EOG444J1R PhylomeDB:Q24492 GenomeRNAi:40972 NextBio:821535
Bgee:Q24492 GermOnline:CG9633 Uniprot:Q24492
Length = 603
Score = 769 (275.8 bits), Expect = 2.4e-110, Sum P(2) = 2.4e-110
Identities = 167/370 (45%), Positives = 224/370 (60%)
Query: 284 GVTAQEVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLATQLND 343
GV A+ + D P L+ L + I A E Y I DG NS+AMLA+QLN
Sbjct: 9 GVIARIMHGEVVDAPVLQ-ILAIKKI-NSAADSERYRIL--ISDGKYFNSYAMLASQLNV 64
Query: 344 IITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKIGNPQPLXX 403
+ +G L EFTIVQ+ +Y+ S V A R VLII EL ++ PG E+ KIG P
Sbjct: 65 MQHNGELEEFTIVQLDKYVTSLVGKDGAGKR-VLIISELTVVNPGAEVKSKIGEPVTYEN 123
Query: 404 XXXXXXXXXXPAATNTNG----SNGVHNNVA-IPRQASAPVVQTHPIVSLSPYQNKWTIK 458
PA T+ + HNN I +S THPI SLSPYQNKW IK
Sbjct: 124 AAKQDLAPK-PAVTSNSKPIAKKEPSHNNNNNIVMNSSINSGMTHPISSLSPYQNKWVIK 182
Query: 459 ARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNC 518
ARVT+K+ IR W+NARG GKLFS+DL+DESGEIRAT F ++C++F+D+I+ D VYYIS C
Sbjct: 183 ARVTSKSGIRTWSNARGEGKLFSMDLMDESGEIRATAFKEQCDKFYDLIQVDSVYYISKC 242
Query: 519 TLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENID 578
LKPANK++SS+NN YEM+F+ T V C + + +P +KY VP+ ++ + +D
Sbjct: 243 QLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNLVPISDVSGMENKAAVD 302
Query: 579 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAV 638
+G+C + EL S +T K + KRDITLVD S +++++TLWG +A FD +PVI V
Sbjct: 303 TIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWGDDAVNFDGHVQPVILV 362
Query: 639 KAARVSEFQG 648
K R++EF G
Sbjct: 363 KGTRINEFNG 372
Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
Identities = 133/321 (41%), Positives = 189/321 (58%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PANK++SS+NN YEM+F+ T V C + + +P +KY VP+ ++ + +D +G
Sbjct: 246 PANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNLVPISDVSGMENKAAVDTIG 305
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+C + EL S +T K + KRDITLVD S +++++TLWG +A FD +PVI VK
Sbjct: 306 ICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWGDDAVNFDGHVQPVILVKGT 365
Query: 125 RVSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFSTQTNTRF-EPVSQRTXXXXXXXXX 183
R++EF GGK+ NPDIPE HKL+GWF VS RT
Sbjct: 366 RINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWFDNGGGDSVANMVSARTGGGSFSTEW 425
Query: 184 XXXXXREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 243
++ + + LG GDK DY + ++ + + N Y+ACP DCNKKV+D+ N +RC
Sbjct: 426 MTL--KDARARNLGSGDKPDYFQCKAVVHIVKQENAFYRACPQSDCNKKVVDEGNDQFRC 483
Query: 244 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA---- 299
EKCN F F YRL++ + IGDWT++ WV+ F E +LG T+QEVGE+ E+ PA
Sbjct: 484 EKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLGHTSQEVGEALENDPAKAEQ 543
Query: 300 LKKAL-FTQYIFRLRAKLEHY 319
+ AL FT +IF+LR K E Y
Sbjct: 544 IFSALNFTSHIFKLRCKNEVY 564
Score = 341 (125.1 bits), Expect = 2.4e-110, Sum P(2) = 2.4e-110
Identities = 68/165 (41%), Positives = 99/165 (60%)
Query: 628 FDASNKPVIA-VKAARVS--EFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNT 684
FD +A + +AR F + +++ + + LG GDK DY + ++ + + N
Sbjct: 400 FDNGGGDSVANMVSARTGGGSFSTEWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQENA 459
Query: 685 TYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEA 744
Y+ACP DCNKKV+D+ N +RCEKCN F F YRL++ + IGDWT++ WV+ F
Sbjct: 460 FYRACPQSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVG 519
Query: 745 ESILGVTAQEVGESTEDHPA----LKKAL-FTQYIFRLRAKLEHY 784
E +LG T+QEVGE+ E+ PA + AL FT +IF+LR K E Y
Sbjct: 520 EQLLGHTSQEVGEALENDPAKAEQIFSALNFTSHIFKLRCKNEVY 564
>RGD|1307376 [details] [associations]
symbol:Rpa1 "replication protein A1" species:10116 "Rattus
norvegicus" [GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA;ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0000794 "condensed nuclear chromosome"
evidence=ISO] [GO:0000800 "lateral element" evidence=IEA;ISO]
[GO:0001673 "male germ cell nucleus" evidence=IEA;ISO] [GO:0001701
"in utero embryonic development" evidence=IEA;ISO] [GO:0003682
"chromatin binding" evidence=IEA;ISO] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005662 "DNA replication factor A complex" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006260 "DNA
replication" evidence=IC] [GO:0007126 "meiosis" evidence=IEA;ISO]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA;ISO] [GO:0015629 "actin cytoskeleton"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=IEA;ISO]
[GO:0030097 "hemopoiesis" evidence=IEA;ISO] [GO:0048873
"homeostasis of number of cells within a tissue" evidence=IEA;ISO]
[GO:0051276 "chromosome organization" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR004365 InterPro:IPR004591
InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057 RGD:1307376
GO:GO:0007126 GO:GO:0005737 GO:GO:0015629 GO:GO:0016605
GO:GO:0008284 GO:GO:0006260 GO:GO:0001701 GO:GO:0003682
GO:GO:0001673 GO:GO:0003697 GO:GO:0048873 GO:GO:0000724
GO:GO:0030097 GO:GO:0000794 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0051276 GO:GO:0005662 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 GeneTree:ENSGT00390000012403 KO:K07466
TIGRFAMs:TIGR00617 CTD:6117 HOGENOM:HOG000162322 HOVERGEN:HBG010502
OMA:ICQVNRF OrthoDB:EOG4V9TQ8 HSSP:P27694 EMBL:AY325234
IPI:IPI00382200 RefSeq:NP_001041308.1 UniGene:Rn.14841 SMR:Q7TP21
STRING:Q7TP21 Ensembl:ENSRNOT00000004229 GeneID:287524
KEGG:rno:287524 InParanoid:Q7TP21 NextBio:626397
Genevestigator:Q7TP21 Uniprot:Q7TP21
Length = 680
Score = 565 (203.9 bits), Expect = 5.0e-104, Sum P(3) = 5.0e-104
Identities = 105/208 (50%), Positives = 151/208 (72%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKLFSI+L+DESGEIRAT FN++ ++F
Sbjct: 173 PIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIRATAFNEQVDKF 232
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+IE +KVYY S TLK ANK+FS++ NDYEM+F + T+V+PC + ++P+V++ F
Sbjct: 233 FPLIEVNKVYYFSKGTLKIANKQFSAVKNDYEMTFNNETSVLPCEDGH--HLPTVQFDFT 290
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
+ + S D +D++G+C + + +T K+N + KR+I L+D S VT TLWG+
Sbjct: 291 GIGDLESKSKDSLVDIIGICKSYEDATKITVKSNNREVAKRNICLMDMSGKVVTATLWGE 350
Query: 624 EAETFDASNKPVIAVKAARVSEFQGNLL 651
+A+ FD S +PV+A+K ARVS+F G L
Sbjct: 351 DADKFDGSRQPVMAIKGARVSDFGGRSL 378
Score = 348 (127.6 bits), Expect = 1.9e-58, Sum P(2) = 1.9e-58
Identities = 63/153 (41%), Positives = 100/153 (65%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+FS++ NDYEM+F + T+V+PC + ++P+V++ F + + S D +D++G+
Sbjct: 252 ANKQFSAVKNDYEMTFNNETSVLPCEDGH--HLPTVQFDFTGIGDLESKSKDSLVDIIGI 309
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T K+N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 310 CKSYEDATKITVKSNNREVAKRNICLMDMSGKVVTATLWGEDADKFDGSRQPVMAIKGAR 369
Query: 126 VSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGW 158
VS+F GG++ NPDIPE +KL+GW
Sbjct: 370 VSDF-GGRSLSVLSSSTVLVNPDIPEAYKLRGW 401
Score = 331 (121.6 bits), Expect = 5.0e-104, Sum P(3) = 5.0e-104
Identities = 71/179 (39%), Positives = 95/179 (53%)
Query: 620 LWGKEAETFDASNKPVIAVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVF 679
+WG ++E + +++ N + E + + LG GDKADY S +
Sbjct: 470 MWGFDSEGQALDGVSISDLRSGGTGGSNTNWKTLYEAKSENLGQGDKADYFSTVATVVFL 529
Query: 680 RGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTL 739
R N Y+ACP+QDCNKKVIDQ NG+YRCEKC++EF F YR+IL V I D+ + WVT
Sbjct: 530 RKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSVNIADFQENQWVTC 589
Query: 740 FQNEAESILGVTAQEVGESTED-------------HPALKKALFTQYIFRLRAKLEHYN 785
FQ AE+ILG +GE E + A F + FR+R KLE YN
Sbjct: 590 FQESAEAILGQNTVYLGELKEKVGCVFVSMNEQAFEEVFQNANFRSFTFRIRVKLETYN 648
Score = 326 (119.8 bits), Expect = 6.3e-58, Sum P(2) = 6.3e-58
Identities = 68/149 (45%), Positives = 85/149 (57%)
Query: 190 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 249
E + + LG GDKADY S + R N Y+ACP+QDCNKKVIDQ NG+YRCEKC++E
Sbjct: 505 EAKSENLGQGDKADYFSTVATVVFLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDRE 564
Query: 250 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED------------- 296
F F YR+IL V I D+ + WVT FQ AE+ILG +GE E
Sbjct: 565 FPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNTVYLGELKEKVGCVFVSMNEQAF 624
Query: 297 HPALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F + FR+R KLE YN +I
Sbjct: 625 EEVFQNANFRSFTFRIRVKLETYNDESRI 653
Score = 168 (64.2 bits), Expect = 5.0e-104, Sum P(3) = 5.0e-104
Identities = 49/154 (31%), Positives = 73/154 (47%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
DG+N S MLATQLN ++ G L+ + Q+ R+IV+ + G R V+I+++L ++K
Sbjct: 35 DGLNTLSSFMLATQLNALVEGGQLASNCVCQVHRFIVNTLKDG----RRVVILMDLEVVK 90
Query: 387 PGTEIGFKIGNPQPLXXXXXXXXXXXXPAATNT---------NGSNGVHNNVAIPRQASA 437
E+G KIGNP P PA+ T NGS GV + VA AS
Sbjct: 91 SAGEVGVKIGNPVPYNEGHAQQQAVSAPASAATPPASKPQPQNGSLGVGSTVAKAYGASK 150
Query: 438 PVVQTHPIVSLSPYQNKWTIKARVTNKTPIR-EW 470
P + L P + + + TP + +W
Sbjct: 151 PFGKPAGTGLLQPTSGTQSKVVPIASLTPYQSKW 184
>MGI|MGI:1915525 [details] [associations]
symbol:Rpa1 "replication protein A1" species:10090 "Mus
musculus" [GO:0000724 "double-strand break repair via homologous
recombination" evidence=IMP] [GO:0000793 "condensed chromosome"
evidence=IDA] [GO:0000794 "condensed nuclear chromosome"
evidence=IDA] [GO:0000800 "lateral element" evidence=IDA]
[GO:0001673 "male germ cell nucleus" evidence=IDA] [GO:0001701 "in
utero embryonic development" evidence=IMP] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005662 "DNA replication factor A complex"
evidence=ISO] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0007126 "meiosis" evidence=IDA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IMP] [GO:0016605 "PML body" evidence=ISO] [GO:0030097
"hemopoiesis" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048873 "homeostasis of number of cells within a
tissue" evidence=IMP] [GO:0051276 "chromosome organization"
evidence=IMP] InterPro:IPR004365 InterPro:IPR004591
InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057 MGI:MGI:1915525
GO:GO:0007126 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
GO:GO:0008284 GO:GO:0006260 GO:GO:0001701 GO:GO:0003682
Reactome:REACT_120463 GO:GO:0001673 GO:GO:0048873 GO:GO:0000724
GO:GO:0030097 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0051276 Reactome:REACT_27235 GO:GO:0000800 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 GeneTree:ENSGT00390000012403 KO:K07466
TIGRFAMs:TIGR00617 CTD:6117 HOGENOM:HOG000162322 HOVERGEN:HBG010502
OrthoDB:EOG4V9TQ8 ChiTaRS:RPA1 EMBL:AK148035 EMBL:AK150785
EMBL:AK151590 EMBL:AK153144 EMBL:AK165316 EMBL:AK165944
EMBL:AK167598 EMBL:AK169599 EMBL:AL603834 EMBL:BC019119
IPI:IPI00124520 RefSeq:NP_001157695.1 RefSeq:NP_080929.1
UniGene:Mm.180734 ProteinModelPortal:Q8VEE4 SMR:Q8VEE4
IntAct:Q8VEE4 STRING:Q8VEE4 PaxDb:Q8VEE4 PRIDE:Q8VEE4
Ensembl:ENSMUST00000092907 GeneID:68275 KEGG:mmu:68275
UCSC:uc007kdi.2 NextBio:326898 Bgee:Q8VEE4 CleanEx:MM_RPA1
Genevestigator:Q8VEE4 GermOnline:ENSMUSG00000000751 Uniprot:Q8VEE4
Length = 623
Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
Identities = 131/326 (40%), Positives = 189/326 (57%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+FS++ NDYEM+F + T+V+PC + ++P+V++ F + + + D +D++G+
Sbjct: 274 ANKQFSAVKNDYEMTFNNETSVLPCEDGH--HLPTVQFDFTGIGDLESKAKDALVDIIGI 331
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + +T K+N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 332 CKSYEDSIKITVKSNNREVAKRNIYLMDMSGKVVTTTLWGEDADKFDGSRQPVMAIKGAR 391
Query: 126 VSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFSTQTNTRFE-PVSQRTXXXXXXXXXX 184
VS+F GG++ NPDIPE +KL+GWF ++ +S
Sbjct: 392 VSDF-GGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQALDGVSISDHRSGGAGGGNTN 450
Query: 185 XXXXREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
E + + LG GDKADY S + R N Y+ACP+QDCNKKVIDQ NG+YRCE
Sbjct: 451 WKTLHEAKSENLGQGDKADYFSTVAAVVFLRKENCMYQACPTQDCNKKVIDQQNGLYRCE 510
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----A 299
KC++EF F YR+IL I D+ + WVT FQ AE+ILG +GE E +
Sbjct: 511 KCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAILGQNTMYLGELKEKNEQAFEEV 570
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F + FR+R KLE YN +I
Sbjct: 571 FQNANFRSFTFRIRVKLETYNDESRI 596
Score = 549 (198.3 bits), Expect = 1.2e-100, Sum P(3) = 1.2e-100
Identities = 102/208 (49%), Positives = 149/208 (71%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKLFS++L+DESGEIRAT FN++ ++F
Sbjct: 195 PIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKF 254
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+IE +KVYY S LK ANK+FS++ NDYEM+F + T+V+PC + ++P+V++ F
Sbjct: 255 FPLIEVNKVYYFSKGALKIANKQFSAVKNDYEMTFNNETSVLPCEDGH--HLPTVQFDFT 312
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
+ + + D +D++G+C + +T K+N + KR+I L+D S VT TLWG+
Sbjct: 313 GIGDLESKAKDALVDIIGICKSYEDSIKITVKSNNREVAKRNIYLMDMSGKVVTTTLWGE 372
Query: 624 EAETFDASNKPVIAVKAARVSEFQGNLL 651
+A+ FD S +PV+A+K ARVS+F G L
Sbjct: 373 DADKFDGSRQPVMAIKGARVSDFGGRSL 400
Score = 340 (124.7 bits), Expect = 1.2e-100, Sum P(3) = 1.2e-100
Identities = 67/142 (47%), Positives = 85/142 (59%)
Query: 649 NLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRC 708
N + E + + LG GDKADY S + R N Y+ACP+QDCNKKVIDQ NG+YRC
Sbjct: 450 NWKTLHEAKSENLGQGDKADYFSTVAAVVFLRKENCMYQACPTQDCNKKVIDQQNGLYRC 509
Query: 709 EKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP----- 763
EKC++EF F YR+IL I D+ + WVT FQ AE+ILG +GE E +
Sbjct: 510 EKCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAILGQNTMYLGELKEKNEQAFEE 569
Query: 764 ALKKALFTQYIFRLRAKLEHYN 785
+ A F + FR+R KLE YN
Sbjct: 570 VFQNANFRSFTFRIRVKLETYN 591
Score = 143 (55.4 bits), Expect = 1.2e-100, Sum P(3) = 1.2e-100
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
DG+N S MLATQLN ++ G L+ + Q+ ++IV+ + G R V+++++L ++K
Sbjct: 48 DGLNTLSSFMLATQLNTLVEGGQLASNCVCQVHKFIVNTLKDG----RKVVVLMDLEVMK 103
Query: 387 PGTEIGFKIGNPQP 400
++G KIGNP P
Sbjct: 104 SAEDVGLKIGNPVP 117
>POMBASE|SPBC660.13c [details] [associations]
symbol:ssb1 "DNA replication factor A subunit Ssb1"
species:4896 "Schizosaccharomyces pombe" [GO:0000723 "telomere
maintenance" evidence=IGI;IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=ISO] [GO:0000781
"chromosome, telomeric region" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005662 "DNA replication factor A complex"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IMP] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=ISO] [GO:0006281 "DNA repair" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057
PomBase:SPBC660.13c GO:GO:0005829 GO:GO:0046872 GO:GO:0003677
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0000724
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000781
GO:GO:0000723 GO:GO:0006269 GO:GO:0005662 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 KO:K07466 TIGRFAMs:TIGR00617
HOGENOM:HOG000162322 OMA:QNKWVIK EMBL:U59385 EMBL:U75446 PIR:T40625
RefSeq:NP_595092.1 ProteinModelPortal:Q92372 DIP:DIP-29237N
IntAct:Q92372 STRING:Q92372 EnsemblFungi:SPBC660.13c.1
GeneID:2541158 KEGG:spo:SPBC660.13c OrthoDB:EOG4F7RTC
NextBio:20802271 Uniprot:Q92372
Length = 609
Score = 554 (200.1 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
Identities = 125/343 (36%), Positives = 198/343 (57%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIIL-ELN 383
+ D +N +ML+TQLN ++ + L + VQ+ ++ V+ + L +L EL
Sbjct: 51 LSDSINYAQ-SMLSTQLNHLVAENKLQKGAFVQLTQFTVNVMKERKILIVLGLNVLTELG 109
Query: 384 II-KPGTEIGFKIGNPQPLXXXXXXXXXXXXPA---ATNTN---GSNGVHNNVAIP---R 433
++ K G G + L P +T+TN G+N A P +
Sbjct: 110 VMDKIGNPAGLE--TVDALRQQQNEQNNASAPRTGISTSTNSFYGNNAAATAPAPPPMMK 167
Query: 434 QASAP-VVQT--HPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE 490
+ +AP + T +PI LSPYQNKWTI+ARVTNK+ ++ W+N RG GKLFS++LLDESGE
Sbjct: 168 KPAAPNSLSTIIYPIEGLSPYQNKWTIRARVTNKSEVKHWHNQRGEGKLFSVNLLDESGE 227
Query: 491 IRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNED 550
IRAT FND+ + F+D++++ VYYIS C + A K+++++ N+YE+ F T + ED
Sbjct: 228 IRATGFNDQVDAFYDILQEGSVYYISRCRVNIAKKQYTNVQNEYELMFERDTEIRKA-ED 286
Query: 551 EVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVD 610
+ +P K+ FV L+ + +++ D IDV+GV + + +T + + + KRDIT+VD
Sbjct: 287 QTA-VPVAKFSFVSLQEVGDVAKDAVIDVIGVLQNVGPVQQITSRATSRGFDKRDITIVD 345
Query: 611 QSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM 653
Q+ + +TLWGK A F S + ++A K +V++FQG L M
Sbjct: 346 QTGYEMRVTLWGKTAIEFSVSEESILAFKGVKVNDFQGRSLSM 388
Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
Identities = 110/329 (33%), Positives = 182/329 (55%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+++++ N+YE+ F T + ED+ +P K+ FV L+ + +++ D IDV+GV
Sbjct: 260 AKKQYTNVQNEYELMFERDTEIRKA-EDQTA-VPVAKFSFVSLQEVGDVAKDAVIDVIGV 317
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
+ + +T + + + KRDIT+VDQ+ + +TLWGK A F S + ++A K +
Sbjct: 318 LQNVGPVQQITSRATSRGFDKRDITIVDQTGYEMRVTLWGKTAIEFSVSEESILAFKGVK 377
Query: 126 VSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFSTQTNTRFEPVSQRTXXXXXXXXXXX 185
V++FQG ++ +PDI E H L+GW+ Q R + ++ +
Sbjct: 378 VNDFQG-RSLSMLTSSTMSVDPDIQESHLLKGWYDGQG--RGQEFAKHSVISSTLSTTGR 434
Query: 186 XXXR----EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMY 241
R E+Q + LGM + DY S++G I R N +Y ACP+ DCNKKV DQ G +
Sbjct: 435 SAERKNIAEVQAEHLGMSETPDYFSLKGTIVYIRKKNVSYPACPAADCNKKVFDQG-GSW 493
Query: 242 RCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPA- 299
RCEKCNKE++ YR I+ + +GD T +W+ +F + + I+ TA E+ + E D A
Sbjct: 494 RCEKCNKEYDAPQYRYIITIAVGDHTGQLWLNVFDDVGKLIMHKTADELNDLQENDENAF 553
Query: 300 ---LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ +A + YIF+ RAK +++ G ++
Sbjct: 554 MNCMAEACYMPYIFQCRAKQDNFKGEMRV 582
Score = 280 (103.6 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
Identities = 55/135 (40%), Positives = 83/135 (61%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKE 714
E+Q + LGM + DY S++G I R N +Y ACP+ DCNKKV DQ G +RCEKCNKE
Sbjct: 443 EVQAEHLGMSETPDYFSLKGTIVYIRKKNVSYPACPAADCNKKVFDQG-GSWRCEKCNKE 501
Query: 715 FNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPA----LKKAL 769
++ YR I+ + +GD T +W+ +F + + I+ TA E+ + E D A + +A
Sbjct: 502 YDAPQYRYIITIAVGDHTGQLWLNVFDDVGKLIMHKTADELNDLQENDENAFMNCMAEAC 561
Query: 770 FTQYIFRLRAKLEHY 784
+ YIF+ RAK +++
Sbjct: 562 YMPYIFQCRAKQDNF 576
>ASPGD|ASPL0000065893 [details] [associations]
symbol:AN7423 species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0005662 "DNA replication
factor A complex" evidence=IEA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 EMBL:BN001304
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR013955 Pfam:PF08646 TIGRFAMs:TIGR00617 OMA:QNKWVIK
EnsemblFungi:CADANIAT00000512 Uniprot:C8VB95
Length = 603
Score = 564 (203.6 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 124/328 (37%), Positives = 190/328 (57%)
Query: 336 MLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKI 395
MLA Q N +TDG L + V++K++ + S + +LI+L+L ++K E K+
Sbjct: 61 MLAIQANHFVTDGLLRKGCFVRLKQF-----QANSVKGKKILIVLDLEVLKELGEAE-KL 114
Query: 396 GNPQPLXXXXXXXXXXXXPAATNTNGSNGVHNNVAI-----------PRQASAPVVQTHP 444
G P+PL P ++NG G A P Q SAP +P
Sbjct: 115 GEPKPLESKAEEEEKPQ-PTTISSNGFYGAKAQNAPSQISSRAQHTRPMQGSAPAT-IYP 172
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
I ++SPY +KWTIKAR T+K+PI+ ++ G G LFS++LLD+SGEIRAT FN++C+ +
Sbjct: 173 IEAISPYAHKWTIKARCTSKSPIKTFHGRSGDGTLFSVNLLDDSGEIRATGFNEQCSALY 232
Query: 505 DMIEKDKVYYISN-CTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
D+ ++ +VYYIS+ C ++ A K+F+++NNDYE++F T V E ++P V++ F
Sbjct: 233 DLFQEGEVYYISSPCRVQIAKKQFTNLNNDYELTFERDTLVEKAEEQN--DVPQVRFNFT 290
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
+ + + D IDV+GV D E + + KT +K Y KR++TLVD + SV +T+WG
Sbjct: 291 TIGDLQSVEKDTTIDVIGVLKDVGETTQIVSKTTKKPYDKRELTLVDNTGFSVRLTIWGT 350
Query: 624 EAETFDASNKPVIAVKAARVSEFQGNLL 651
A F AS + V+A K +VS+F G L
Sbjct: 351 TAMNFAASPESVVAFKGVKVSDFGGKSL 378
Score = 518 (187.4 bits), Expect = 1.3e-49, P = 1.3e-49
Identities = 113/355 (31%), Positives = 188/355 (52%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
A K+F+++NNDYE++F T V E ++P V++ F + + + D IDV+GV
Sbjct: 252 AKKQFTNLNNDYELTFERDTLVEKAEEQN--DVPQVRFNFTTIGDLQSVEKDTTIDVIGV 309
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
D E + + KT +K Y KR++TLVD + SV +T+WG A F AS + V+A K +
Sbjct: 310 LKDVGETTQIVSKTTKKPYDKRELTLVDNTGFSVRLTIWGTTAMNFAASPESVVAFKGVK 369
Query: 126 VSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTXXXXXXXXXX 184
VS+F GGK+ +PDI E H+L+GW+ Q N F +
Sbjct: 370 VSDF-GGKSLSLLSSGSVTVDPDIEEAHRLKGWYDAQGRNENFASHASSVGTMSATKRDQ 428
Query: 185 XXXXREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
+++++QLGM ++ Y ++R + + N Y AC S+ CNKKV + + G +RCE
Sbjct: 429 LKTIAQVREEQLGMSEEPSYFTLRATVVYIKQDNLCYPACLSEGCNKKVTEVDPGQWRCE 488
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPAL--- 300
+C+K YR I+ V + D T +++ F + +LG++A ++ E + D AL
Sbjct: 489 RCDKTHPRAEYRYIMLVNVSDHTGQLYLNCFDDVGRLLLGMSANQLMELPQNDGKALGNV 548
Query: 301 -KKALFTQYIFRLRAKLEHYNGTKKIPDGVNIN---SFAMLATQLNDIITDGTLS 351
+ A + F RAK++HY ++I V+ +++ A++L DII ++S
Sbjct: 549 IQNATCRTWTFGCRAKIDHYGDQQRIRYQVSYAKPVNYSEEASRLADIIDSYSIS 603
Score = 212 (79.7 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 44/140 (31%), Positives = 78/140 (55%)
Query: 650 LLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 709
L + +++++QLGM ++ Y ++R + + N Y AC S+ CNKKV + + G +RCE
Sbjct: 429 LKTIAQVREEQLGMSEEPSYFTLRATVVYIKQDNLCYPACLSEGCNKKVTEVDPGQWRCE 488
Query: 710 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE-DHPAL--- 765
+C+K YR I+ V + D T +++ F + +LG++A ++ E + D AL
Sbjct: 489 RCDKTHPRAEYRYIMLVNVSDHTGQLYLNCFDDVGRLLLGMSANQLMELPQNDGKALGNV 548
Query: 766 -KKALFTQYIFRLRAKLEHY 784
+ A + F RAK++HY
Sbjct: 549 IQNATCRTWTFGCRAKIDHY 568
>UNIPROTKB|I3LSJ9 [details] [associations]
symbol:I3LSJ9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR013955 Pfam:PF08646 GeneTree:ENSGT00390000012403
TIGRFAMs:TIGR00617 Ensembl:ENSSSCT00000030272 OMA:ETTIEEC
Uniprot:I3LSJ9
Length = 550
Score = 573 (206.8 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
Identities = 129/333 (38%), Positives = 193/333 (57%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNR---SVLI----I 379
DG+N S MLATQLN ++ + LS I QI R+IV+ + G + L+ I
Sbjct: 49 DGLNTLSSFMLATQLNPLVEEERLSSNCICQINRFIVNTLKDGRYVVGFFPAALLKWGPI 108
Query: 380 LELNIIKP----GTEIGFKIG----NPQPLXXXXXXXXXXXXPAATNTNGSNGVHNNVAI 431
E P G + F+ NPQ A + G ++
Sbjct: 109 CEQRACSPSPFSGLQGRFRASPPTSNPQQQNGSSGVAGSSTVSKAYGASKIFGKAGATSV 168
Query: 432 PRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEI 491
+ + PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKLFSI+L+DESGEI
Sbjct: 169 VNSSGGTQAKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEI 228
Query: 492 RATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDE 551
RAT FN++ ++F +I D VYY S TLK ANK+F+++ NDYEM+F++ T+V+PC +
Sbjct: 229 RATAFNEQVDKFFPLI--DVVYYFSKGTLKIANKQFTAVKNDYEMTFSNETSVMPCEDGH 286
Query: 552 VGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQ 611
++P+V++ F + + S D +D++G+C + +++ +T K+ + KR+I L+D
Sbjct: 287 --HLPTVQFDFTGIADLENKSKDSLVDIIGICKNYEDVTKITVKSTNREVSKRNIYLMDM 344
Query: 612 SQASVTMTLWGKEAETFDASNKPVIAVKAARVS 644
S V TLWG++A+ FD S +PV+A+K ARVS
Sbjct: 345 SGKVVNATLWGEDADKFDGSRQPVMAIKGARVS 377
Score = 333 (122.3 bits), Expect = 2.2e-43, Sum P(2) = 2.2e-43
Identities = 74/230 (32%), Positives = 122/230 (53%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F++ T+V+PC + ++P+V++ F + + S D +D++G+
Sbjct: 258 ANKQFTAVKNDYEMTFSNETSVMPCEDGH--HLPTVQFDFTGIADLENKSKDSLVDIIGI 315
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + +++ +T K+ + KR+I L+D S V TLWG++A+ FD S +PV+A+K AR
Sbjct: 316 CKNYEDVTKITVKSTNREVSKRNIYLMDMSGKVVNATLWGEDADKFDGSRQPVMAIKGAR 375
Query: 126 VSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFSTQTNTRFEPVSQRTXXXXXXXXXXX 185
VS + NPDIPE +KL+GW + R ++ T
Sbjct: 376 VSX-----SLSILSSSTVIVNPDIPEAYKLRGWLGQRGRLRALTLASDTGAVHNINLSWA 430
Query: 186 XXXREIQDQ-QLGMGDKADYCSVRGIIQVFRGSNTTYKA--CPSQDCNKK 232
R + Q ++G G K DY S + R N Y+ C S+ N K
Sbjct: 431 E--RCLYSQTRIGSGKKPDYFSAVATVVYLRKENCLYRCEKCDSEFPNFK 478
Score = 197 (74.4 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
Identities = 41/91 (45%), Positives = 53/91 (58%)
Query: 701 QNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE 760
+ N +YRCEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG + +GE E
Sbjct: 460 KENCLYRCEKCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQSTAYLGELKE 519
Query: 761 ------DHPALKKALFTQYIFRLRAKLEHYN 785
DH F+ + FR+R KLE YN
Sbjct: 520 KVGHVFDHSLFSHISFSSFSFRIRVKLETYN 550
Score = 197 (74.4 bits), Expect = 2.2e-43, Sum P(2) = 2.2e-43
Identities = 41/91 (45%), Positives = 53/91 (58%)
Query: 236 QNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTE 295
+ N +YRCEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG + +GE E
Sbjct: 460 KENCLYRCEKCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQSTAYLGELKE 519
Query: 296 ------DHPALKKALFTQYIFRLRAKLEHYN 320
DH F+ + FR+R KLE YN
Sbjct: 520 KVGHVFDHSLFSHISFSSFSFRIRVKLETYN 550
>UNIPROTKB|E2R436 [details] [associations]
symbol:RPA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051276 "chromosome organization"
evidence=IEA] [GO:0048873 "homeostasis of number of cells within a
tissue" evidence=IEA] [GO:0030097 "hemopoiesis" evidence=IEA]
[GO:0016605 "PML body" evidence=IEA] [GO:0015629 "actin
cytoskeleton" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0007126 GO:GO:0005737 GO:GO:0003677
GO:GO:0015629 GO:GO:0016605 GO:GO:0008284 GO:GO:0006260
GO:GO:0001701 GO:GO:0003682 GO:GO:0001673 GO:GO:0048873
GO:GO:0000724 GO:GO:0030097 GO:GO:0000794 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0051276 GO:GO:0005662
InterPro:IPR013955 Pfam:PF08646 GeneTree:ENSGT00390000012403
KO:K07466 TIGRFAMs:TIGR00617 OMA:ICQVNRF EMBL:AAEX03006697
RefSeq:XP_003639310.1 ProteinModelPortal:E2R436
Ensembl:ENSCAFT00000030554 GeneID:100855690 KEGG:cfa:100855690
NextBio:20864074 Uniprot:E2R436
Length = 616
Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 132/326 (40%), Positives = 192/326 (58%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC + ++P+V++ F + + + D ID++G+
Sbjct: 265 ANKQFTAVKNDYEMTFNNETSVMPCEDGH--HLPTVQFDFTGIGDLESKTKDSLIDIIGI 322
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C E + +T K+N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 323 CKSYEEATKITVKSNNREVSKRNIYLMDMSGKVVTATLWGEDADRFDGSRQPVMAIKGAR 382
Query: 126 VSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFSTQTNTRFE-PVSQRTXXXXXXXXXX 184
VS+F GG++ NPDIPE +KL+GWF ++ +S
Sbjct: 383 VSDF-GGRSLSVLSSSTIIVNPDIPEAYKLRGWFDSEGQALDGISISDLKSGGTGGGNTN 441
Query: 185 XXXXREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
E++ + LG GDKADY S + R N Y+ACP+QDCNKKVIDQ NG+YRCE
Sbjct: 442 WKTLYEVKSENLGHGDKADYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCE 501
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----A 299
KC+ EF +F YR+IL V I D+ + WVT FQ AE+I+G +GE E +
Sbjct: 502 KCDSEFPSFKYRMILSVNIADFQENQWVTCFQESAEAIIGQNTAYLGELKEKNEQAFEEV 561
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F + FR+R KLE YN +I
Sbjct: 562 FQNANFRSFTFRIRVKLETYNDESRI 587
Score = 563 (203.2 bits), Expect = 5.3e-69, Sum P(2) = 5.3e-69
Identities = 109/237 (45%), Positives = 162/237 (68%)
Query: 415 AATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNAR 474
+A+ T G G ++ + V+ PI SL+PYQ+KWTI ARVTNK+ IR W+N+R
Sbjct: 160 SASKTFGKPG---GTSLASSSGGTQVKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSR 216
Query: 475 GSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDY 534
G GKLFSI+L+DESGEIRAT FN++ ++F +I+ +KVYYIS LK ANK+F+++ NDY
Sbjct: 217 GEGKLFSIELVDESGEIRATAFNEQVDKFFPLIDMNKVYYISKGILKIANKQFTAVKNDY 276
Query: 535 EMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTG 594
EM+F + T+V+PC + ++P+V++ F + + + D ID++G+C E + +T
Sbjct: 277 EMTFNNETSVMPCEDGH--HLPTVQFDFTGIGDLESKTKDSLIDIIGICKSYEEATKITV 334
Query: 595 KTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL 651
K+N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K ARVS+F G L
Sbjct: 335 KSNNREVSKRNIYLMDMSGKVVTATLWGEDADRFDGSRQPVMAIKGARVSDFGGRSL 391
Score = 339 (124.4 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 77/209 (36%), Positives = 108/209 (51%)
Query: 582 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 641
+ I A +S G++ I D +A + E + D + + +K+
Sbjct: 376 MAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKLRGWFDSEGQALDGIS--ISDLKSG 433
Query: 642 RVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 701
N + E++ + LG GDKADY S + R N Y+ACP+QDCNKKVIDQ
Sbjct: 434 GTGGGNTNWKTLYEVKSENLGHGDKADYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQ 493
Query: 702 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 761
NG+YRCEKC+ EF +F YR+IL V I D+ + WVT FQ AE+I+G +GE E
Sbjct: 494 QNGLYRCEKCDSEFPSFKYRMILSVNIADFQENQWVTCFQESAEAIIGQNTAYLGELKEK 553
Query: 762 HP-----ALKKALFTQYIFRLRAKLEHYN 785
+ + A F + FR+R KLE YN
Sbjct: 554 NEQAFEEVFQNANFRSFTFRIRVKLETYN 582
Score = 155 (59.6 bits), Expect = 5.3e-69, Sum P(2) = 5.3e-69
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
DG+N S MLATQLN ++ + LS I QI R+IV+ + G R V+I++ELNI+K
Sbjct: 48 DGLNTLSSFMLATQLNPLVEEEQLSSNCICQINRFIVNTLKDG----RRVVILMELNILK 103
Query: 387 PGTEIGFKIGNPQP 400
+G KIGNP P
Sbjct: 104 SAEAVGLKIGNPVP 117
>UNIPROTKB|P27694 [details] [associations]
symbol:RPA1 "Replication protein A 70 kDa DNA-binding
subunit" species:9606 "Homo sapiens" [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0030097 "hemopoiesis" evidence=IEA] [GO:0048873 "homeostasis of
number of cells within a tissue" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006261 "DNA-dependent DNA replication"
evidence=TAS] [GO:0006310 "DNA recombination" evidence=TAS]
[GO:0005662 "DNA replication factor A complex" evidence=IPI]
[GO:0016605 "PML body" evidence=IDA] [GO:0000075 "cell cycle
checkpoint" evidence=TAS] [GO:0000082 "G1/S transition of mitotic
cell cycle" evidence=TAS] [GO:0000084 "S phase of mitotic cell
cycle" evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell
cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000718 "nucleotide-excision repair, DNA damage removal"
evidence=TAS] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=TAS] [GO:0000730 "DNA recombinase assembly"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006260
"DNA replication" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0006302 "double-strand break repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0015629 "actin cytoskeleton" evidence=IDA] Reactome:REACT_216
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0007126 GO:GO:0005737 EMBL:CH471108
Reactome:REACT_115566 Reactome:REACT_21300 GO:GO:0046872
GO:GO:0015629 GO:GO:0000082 GO:GO:0016605 GO:GO:0008284
GO:GO:0001701 GO:GO:0003682 Reactome:REACT_111183 GO:GO:0001673
GO:GO:0003697 GO:GO:0048873 GO:GO:0030097 GO:GO:0000794
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000216
GO:GO:0000084 GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383
GO:GO:0000718 GO:GO:0006283 GO:GO:0006271 GO:GO:0032201
GO:GO:0006297 GO:GO:0005662 InterPro:IPR013955 Pfam:PF08646
PDB:2B3G PDBsum:2B3G GO:GO:0000730 eggNOG:COG1599 KO:K07466
TIGRFAMs:TIGR00617 CTD:6117 HOGENOM:HOG000162322 HOVERGEN:HBG010502
OrthoDB:EOG4V9TQ8 OMA:QNKWVIK EMBL:M63488 EMBL:AK289704
EMBL:AB209732 EMBL:AY599563 EMBL:BC018126 IPI:IPI00020127
PIR:A40457 RefSeq:NP_002936.1 UniGene:Hs.461925 PDB:1EWI PDB:1FGU
PDB:1JMC PDB:1L1O PDB:2B29 PDBsum:1EWI PDBsum:1FGU PDBsum:1JMC
PDBsum:1L1O PDBsum:2B29 DisProt:DP00061 ProteinModelPortal:P27694
SMR:P27694 DIP:DIP-24189N IntAct:P27694 MINT:MINT-91488
STRING:P27694 PhosphoSite:P27694 DMDM:1350579 PaxDb:P27694
PeptideAtlas:P27694 PRIDE:P27694 DNASU:6117 Ensembl:ENST00000254719
GeneID:6117 KEGG:hsa:6117 UCSC:uc002fto.2 GeneCards:GC17P001680
HGNC:HGNC:10289 HPA:CAB004563 HPA:HPA006914 MIM:179835
neXtProt:NX_P27694 PharmGKB:PA34651 InParanoid:P27694
PhylomeDB:P27694 BindingDB:P27694 ChEMBL:CHEMBL1764940 ChiTaRS:RPA1
EvolutionaryTrace:P27694 GenomeRNAi:6117 NextBio:23755 Bgee:P27694
CleanEx:HS_RPA1 Genevestigator:P27694 GermOnline:ENSG00000132383
Uniprot:P27694
Length = 616
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 131/326 (40%), Positives = 192/326 (58%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F + + S D +D++G+
Sbjct: 265 ANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFTGIDDLENKSKDSLVDIIGI 322
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + + +T ++N + KR+I L+D S VT TLWG++A+ FD S +PV+A+K AR
Sbjct: 323 CKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGAR 382
Query: 126 VSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFSTQTNTRFE-PVSQRTXXXXXXXXXX 184
VS+F GG++ NPDIPE +KL+GWF + +S
Sbjct: 383 VSDF-GGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGSNTN 441
Query: 185 XXXXREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCE
Sbjct: 442 WKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCE 501
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----A 299
KC+ EF F YR+IL V I D+ + WVT FQ AE+ILG A +GE + +
Sbjct: 502 KCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEV 561
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F +IFR+R K+E YN +I
Sbjct: 562 FQNANFRSFIFRVRVKVETYNDESRI 587
Score = 563 (203.2 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
Identities = 103/208 (49%), Positives = 152/208 (73%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKLFS++L+DESGEIRAT FN++ ++F
Sbjct: 186 PIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKF 245
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+IE +KVYY S TLK ANK+F+++ NDYEM+F + T+V+PC +D ++P+V++ F
Sbjct: 246 FPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTVQFDFT 303
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
+ + S D +D++G+C + + +T ++N + KR+I L+D S VT TLWG+
Sbjct: 304 GIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGE 363
Query: 624 EAETFDASNKPVIAVKAARVSEFQGNLL 651
+A+ FD S +PV+A+K ARVS+F G L
Sbjct: 364 DADKFDGSRQPVLAIKGARVSDFGGRSL 391
Score = 342 (125.4 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 78/209 (37%), Positives = 109/209 (52%)
Query: 582 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 641
+ I A +S G++ I D +A + E + D + + +K+
Sbjct: 376 LAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVS--ISDLKSG 433
Query: 642 RVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 701
V N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ
Sbjct: 434 GVGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQ 493
Query: 702 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 761
NG+YRCEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG A +GE +
Sbjct: 494 QNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDK 553
Query: 762 HP-----ALKKALFTQYIFRLRAKLEHYN 785
+ + A F +IFR+R K+E YN
Sbjct: 554 NEQAFEEVFQNANFRSFIFRVRVKVETYN 582
Score = 146 (56.5 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
Identities = 40/113 (35%), Positives = 60/113 (53%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
DG+N S MLATQLN ++ + LS + QI R+IV+ + G R V+I++EL ++K
Sbjct: 48 DGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDG----RRVVILMELEVLK 103
Query: 387 PGTEIGFKIGNPQPLXXXXXXXXXX-----XXPAATNT----NGSNGVHNNVA 430
+G KIGNP P PAA++ NGS+G+ + V+
Sbjct: 104 SAEAVGVKIGNPVPYNEGLGQPQVAPPAPAASPAASSRPQPQNGSSGMGSTVS 156
>UNIPROTKB|Q0VCV0 [details] [associations]
symbol:RPA1 "Replication protein A1, 70kDa" species:9913
"Bos taurus" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0048873 "homeostasis of number of cells within a tissue"
evidence=IEA] [GO:0030097 "hemopoiesis" evidence=IEA] [GO:0016605
"PML body" evidence=IEA] [GO:0015629 "actin cytoskeleton"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0001673 "male germ cell nucleus" evidence=IEA]
[GO:0000800 "lateral element" evidence=IEA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057
GO:GO:0007126 GO:GO:0005737 GO:GO:0003677 GO:GO:0015629
GO:GO:0016605 GO:GO:0008284 GO:GO:0006260 GO:GO:0001701
GO:GO:0003682 GO:GO:0001673 GO:GO:0048873 GO:GO:0000724
GO:GO:0030097 GO:GO:0000794 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0051276 GO:GO:0005662 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 GeneTree:ENSGT00390000012403 KO:K07466
TIGRFAMs:TIGR00617 CTD:6117 HOGENOM:HOG000162322 HOVERGEN:HBG010502
OrthoDB:EOG4V9TQ8 OMA:QNKWVIK EMBL:DAAA02048667 EMBL:DAAA02048664
EMBL:DAAA02048665 EMBL:DAAA02048666 EMBL:BC119986 IPI:IPI00700452
RefSeq:NP_001068644.1 UniGene:Bt.19931 SMR:Q0VCV0 STRING:Q0VCV0
Ensembl:ENSBTAT00000012812 GeneID:504844 KEGG:bta:504844
InParanoid:Q0VCV0 NextBio:20866858 Uniprot:Q0VCV0
Length = 616
Score = 655 (235.6 bits), Expect = 2.9e-66, Sum P(2) = 2.9e-66
Identities = 129/326 (39%), Positives = 190/326 (58%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F + T+V+PC + ++P+V++ F + + S D +D++G+
Sbjct: 265 ANKQFTAVKNDYEMTFNNETSVMPCEDGH--HLPTVQFDFTGIGDLESKSKDSLVDIIGI 322
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + +++ + K+N + KR+I L+D S V TLWG +A+ FD S +PV+A+K AR
Sbjct: 323 CKNYEDVTKIIVKSNNREVSKRNIYLMDMSGKVVNATLWGDDADKFDGSRQPVMAIKGAR 382
Query: 126 VSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFSTQTNTRFE-PVSQRTXXXXXXXXXX 184
VS+F GG++ NPDIPE +KL+GWF ++ +S
Sbjct: 383 VSDF-GGRSLSVLSSSTIIVNPDIPEAYKLRGWFDSEGQALDGISISDLKSGGAGGSNTN 441
Query: 185 XXXXREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCE
Sbjct: 442 WKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCE 501
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----A 299
KC+ EF F YR+IL V I D+ + WVT FQ AE+ILG + +GE E +
Sbjct: 502 KCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQSTAYLGELKEKNEQAFEEV 561
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F + FR+R KLE YN +I
Sbjct: 562 FQNANFRSFTFRIRVKLETYNDESRI 587
Score = 554 (200.1 bits), Expect = 4.2e-67, Sum P(2) = 4.2e-67
Identities = 109/236 (46%), Positives = 160/236 (67%)
Query: 416 ATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARG 475
A+ T G G + V A VV PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG
Sbjct: 161 ASKTFGKAGGTSQVNSSGGTQAKVV---PIASLTPYQSKWTICARVTNKSQIRTWSNSRG 217
Query: 476 SGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYE 535
GKLFSI+L+DESGEIRAT FN++ ++F +I+ +KVYY S TLK ANK+F+++ NDYE
Sbjct: 218 EGKLFSIELVDESGEIRATAFNEQADKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYE 277
Query: 536 MSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGK 595
M+F + T+V+PC + ++P+V++ F + + S D +D++G+C + +++ + K
Sbjct: 278 MTFNNETSVMPCEDGH--HLPTVQFDFTGIGDLESKSKDSLVDIIGICKNYEDVTKIIVK 335
Query: 596 TNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL 651
+N + KR+I L+D S V TLWG +A+ FD S +PV+A+K ARVS+F G L
Sbjct: 336 SNNREVSKRNIYLMDMSGKVVNATLWGDDADKFDGSRQPVMAIKGARVSDFGGRSL 391
Score = 339 (124.4 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 77/209 (36%), Positives = 107/209 (51%)
Query: 582 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 641
+ I A +S G++ I D +A + E + D + + +K+
Sbjct: 376 MAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKLRGWFDSEGQALDGIS--ISDLKSG 433
Query: 642 RVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 701
N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ
Sbjct: 434 GAGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQ 493
Query: 702 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 761
NG+YRCEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG + +GE E
Sbjct: 494 QNGLYRCEKCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQSTAYLGELKEK 553
Query: 762 HP-----ALKKALFTQYIFRLRAKLEHYN 785
+ + A F + FR+R KLE YN
Sbjct: 554 NEQAFEEVFQNANFRSFTFRIRVKLETYN 582
Score = 146 (56.5 bits), Expect = 4.2e-67, Sum P(2) = 4.2e-67
Identities = 33/74 (44%), Positives = 46/74 (62%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
DG+N S MLATQLN ++ + LS I QI R+IV+ + G R V+I++EL ++K
Sbjct: 48 DGLNTLSSFMLATQLNPLVEEERLSSNCICQINRFIVNTLKDG----RRVVILMELEVLK 103
Query: 387 PGTEIGFKIGNPQP 400
+G KIGNP P
Sbjct: 104 SAEAVGSKIGNPVP 117
Score = 37 (18.1 bits), Expect = 2.9e-66, Sum P(2) = 2.9e-66
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 446 VSLSPYQNKWTIKARVTNKTPI--REW 470
V L Y ++ IKA V + P+ RE+
Sbjct: 576 VKLETYNDESRIKATVVDVKPVDYREY 602
>UNIPROTKB|Q5ZJJ2 [details] [associations]
symbol:RPA1 "Replication protein A 70 kDa DNA-binding
subunit" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0000800 "lateral
element" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0015629 "actin cytoskeleton"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0030097
"hemopoiesis" evidence=IEA] [GO:0048873 "homeostasis of number of
cells within a tissue" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006302 "double-strand break repair" evidence=TAS]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0007126 GO:GO:0005737 GO:GO:0005654
GO:GO:0046872 GO:GO:0003677 GO:GO:0015629 GO:GO:0016605
GO:GO:0008284 GO:GO:0006260 GO:GO:0003682 GO:GO:0001673
GO:GO:0000724 GO:GO:0000794 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0051276 Reactome:REACT_115612 GO:GO:0005662
InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599
GeneTree:ENSGT00390000012403 KO:K07466 TIGRFAMs:TIGR00617
EMBL:AJ720442 IPI:IPI00571088 RefSeq:NP_001006221.1
UniGene:Gga.4736 ProteinModelPortal:Q5ZJJ2 SMR:Q5ZJJ2 STRING:Q5ZJJ2
PRIDE:Q5ZJJ2 Ensembl:ENSGALT00000004849 GeneID:417563
KEGG:gga:417563 CTD:6117 HOGENOM:HOG000162322 HOVERGEN:HBG010502
InParanoid:Q5ZJJ2 OMA:ICQVNRF OrthoDB:EOG4V9TQ8 NextBio:20820847
Uniprot:Q5ZJJ2
Length = 614
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 134/326 (41%), Positives = 190/326 (58%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+++++ NDYE++F + T+V+PC D+ ++PSV++ FV + + D +DV+G+
Sbjct: 262 ANKQYTAVKNDYEITFNNETSVVPC--DDAQHLPSVQFDFVSISDLENTPKDSIVDVIGI 319
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C +++ + K + + KR++ L+D S VT TLWG EAE FD S +PVIA+K AR
Sbjct: 320 CKSYEDVTKIVVKASNREVSKRNVHLMDTSGKLVTATLWGNEAEKFDGSRQPVIAIKGAR 379
Query: 126 VSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFSTQTNT-RFEPVSQRTXXXXXXXXXX 184
VS+F GG++ NPD PE KL+GWF ++ +S
Sbjct: 380 VSDF-GGRSLSVLSSSTVVVNPDSPEAFKLRGWFDSEGQLLECASISDVRGGSASGVNTN 438
Query: 185 XXXXREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
E + ++LG GDKADY S G I R N Y+ACPSQDCNKKVIDQ NG+YRCE
Sbjct: 439 WKTLYEAKSERLGQGDKADYFSCVGTIVHLRKENCMYQACPSQDCNKKVIDQQNGLYRCE 498
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----A 299
KC++EF F YR++L V I D + WVT FQ AE ILG +A +GE + +
Sbjct: 499 KCDREFPNFKYRMMLLVTIADSLDYQWVTCFQESAEFILGQSATFLGELKDKNEQAFEEV 558
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F Y F++R KLE YN +I
Sbjct: 559 FQNANFNTYEFKIRVKLETYNDESRI 584
Score = 559 (201.8 bits), Expect = 5.4e-67, Sum P(2) = 5.4e-67
Identities = 109/237 (45%), Positives = 157/237 (66%)
Query: 415 AATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNAR 474
A +N ++V P + VV PI SL+PYQ+KWTI ARVT K IR W+N+R
Sbjct: 157 APSNQFSKASAPSSVKTPGGTQSKVV---PIASLNPYQSKWTICARVTQKGQIRTWSNSR 213
Query: 475 GSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDY 534
G GKLFSI+L+DESGEIRAT FND+ ++F +IE +KVYY + LK ANK+++++ NDY
Sbjct: 214 GEGKLFSIELVDESGEIRATAFNDQADKFFPLIELNKVYYFTKGNLKTANKQYTAVKNDY 273
Query: 535 EMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTG 594
E++F + T+V+PC D+ ++PSV++ FV + + D +DV+G+C +++ +
Sbjct: 274 EITFNNETSVVPC--DDAQHLPSVQFDFVSISDLENTPKDSIVDVIGICKSYEDVTKIVV 331
Query: 595 KTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL 651
K + + KR++ L+D S VT TLWG EAE FD S +PVIA+K ARVS+F G L
Sbjct: 332 KASNREVSKRNVHLMDTSGKLVTATLWGNEAEKFDGSRQPVIAIKGARVSDFGGRSL 388
Score = 345 (126.5 bits), Expect = 2.4e-38, Sum P(2) = 2.4e-38
Identities = 79/209 (37%), Positives = 110/209 (52%)
Query: 582 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 641
+ I A +S G++ + D +A + E + + ++ + V+
Sbjct: 373 IAIKGARVSDFGGRSLSVLSSSTVVVNPDSPEAFKLRGWFDSEGQLLECAS--ISDVRGG 430
Query: 642 RVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 701
S N + E + ++LG GDKADY S G I R N Y+ACPSQDCNKKVIDQ
Sbjct: 431 SASGVNTNWKTLYEAKSERLGQGDKADYFSCVGTIVHLRKENCMYQACPSQDCNKKVIDQ 490
Query: 702 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 761
NG+YRCEKC++EF F YR++L V I D + WVT FQ AE ILG +A +GE +
Sbjct: 491 QNGLYRCEKCDREFPNFKYRMMLLVTIADSLDYQWVTCFQESAEFILGQSATFLGELKDK 550
Query: 762 HP-----ALKKALFTQYIFRLRAKLEHYN 785
+ + A F Y F++R KLE YN
Sbjct: 551 NEQAFEEVFQNANFNTYEFKIRVKLETYN 579
Score = 140 (54.3 bits), Expect = 5.4e-67, Sum P(2) = 5.4e-67
Identities = 30/74 (40%), Positives = 46/74 (62%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
DGVN S MLATQLN ++ + LS I Q+ R+IV+ + G R V+I+++L+++K
Sbjct: 47 DGVNTLSSFMLATQLNPLVEEERLSAHCICQVNRFIVNSLKDG----RRVVILMDLDVLK 102
Query: 387 PGTEIGFKIGNPQP 400
+G +GNP P
Sbjct: 103 TADMVGGTVGNPVP 116
>UNIPROTKB|F1RHH4 [details] [associations]
symbol:RPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR013955 Pfam:PF08646 GeneTree:ENSGT00390000012403
KO:K07466 TIGRFAMs:TIGR00617 CTD:6117 EMBL:CU914290
RefSeq:XP_003131870.1 UniGene:Ssc.11114 Ensembl:ENSSSCT00000019397
GeneID:100525428 KEGG:ssc:100525428 Uniprot:F1RHH4
Length = 616
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 129/326 (39%), Positives = 192/326 (58%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F++ T+V+PC + ++P+V++ F + + S D +D++G+
Sbjct: 265 ANKQFTAVKNDYEMTFSNETSVMPCEDGH--HLPTVQFDFTGIADLENKSKDSLVDIIGI 322
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + +++ +T K+ + KR+I L+D S V TLWG++A+ FD S +PV+A+K AR
Sbjct: 323 CKNYEDVTKITVKSTNREVSKRNIYLMDMSGKVVNATLWGEDADKFDGSRQPVMAIKGAR 382
Query: 126 VSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFSTQTNTRFE-PVSQRTXXXXXXXXXX 184
VS+F GG++ NPDIPE +KL+GWF ++ +S
Sbjct: 383 VSDF-GGRSLSILSSSTVIVNPDIPEAYKLRGWFDSEGQALDGVSISDLKSGGIGGSNTN 441
Query: 185 XXXXREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCE
Sbjct: 442 WKTLYEVKSENLGQGDKPDYFSAVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCE 501
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----A 299
KC+ EF F YR+IL V I D+ + WVT FQ AE+ILG + +GE E +
Sbjct: 502 KCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQSTAYLGELKEKNEQAFEEV 561
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F + FR+R KLE YN +I
Sbjct: 562 FQNANFRSFTFRIRVKLETYNDESRI 587
Score = 551 (199.0 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 101/208 (48%), Positives = 152/208 (73%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKLFSI+L+DESGEIRAT FN++ ++F
Sbjct: 186 PIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIRATAFNEQVDKF 245
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+I+ +KVYY S TLK ANK+F+++ NDYEM+F++ T+V+PC + ++P+V++ F
Sbjct: 246 FPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFSNETSVMPCEDGH--HLPTVQFDFT 303
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
+ + S D +D++G+C + +++ +T K+ + KR+I L+D S V TLWG+
Sbjct: 304 GIADLENKSKDSLVDIIGICKNYEDVTKITVKSTNREVSKRNIYLMDMSGKVVNATLWGE 363
Query: 624 EAETFDASNKPVIAVKAARVSEFQGNLL 651
+A+ FD S +PV+A+K ARVS+F G L
Sbjct: 364 DADKFDGSRQPVMAIKGARVSDFGGRSL 391
Score = 343 (125.8 bits), Expect = 9.8e-39, Sum P(2) = 9.8e-39
Identities = 77/209 (36%), Positives = 108/209 (51%)
Query: 582 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 641
+ I A +S G++ I D +A + E + D + + +K+
Sbjct: 376 MAIKGARVSDFGGRSLSILSSSTVIVNPDIPEAYKLRGWFDSEGQALDGVS--ISDLKSG 433
Query: 642 RVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 701
+ N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ
Sbjct: 434 GIGGSNTNWKTLYEVKSENLGQGDKPDYFSAVATVVYLRKENCMYQACPTQDCNKKVIDQ 493
Query: 702 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 761
NG+YRCEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG + +GE E
Sbjct: 494 QNGLYRCEKCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQSTAYLGELKEK 553
Query: 762 HP-----ALKKALFTQYIFRLRAKLEHYN 785
+ + A F + FR+R KLE YN
Sbjct: 554 NEQAFEEVFQNANFRSFTFRIRVKLETYN 582
Score = 146 (56.5 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 40/113 (35%), Positives = 58/113 (51%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
DG+N S MLATQLN ++ + LS I QI R+IV+ + G R V+I+++L ++K
Sbjct: 48 DGLNTLSSFMLATQLNPLVEEERLSSNCICQINRFIVNTLKDG----RRVVILMDLEVLK 103
Query: 387 PGTEIGFKIGNPQPLXXXXXXX------XXXXXPAATNT---NGSNGVHNNVA 430
+G KIGNP P P +N NGS+GV + V+
Sbjct: 104 SAEAVGVKIGNPVPYNEGHGQQPVVPPPVSAASPPTSNPQQQNGSSGVGSTVS 156
>UNIPROTKB|I3LHB2 [details] [associations]
symbol:RPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR013955 Pfam:PF08646 GeneTree:ENSGT00390000012403
TIGRFAMs:TIGR00617 OMA:ICQVNRF EMBL:CU914290
Ensembl:ENSSSCT00000029329 Uniprot:I3LHB2
Length = 625
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 129/326 (39%), Positives = 192/326 (58%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+F+++ NDYEM+F++ T+V+PC + ++P+V++ F + + S D +D++G+
Sbjct: 274 ANKQFTAVKNDYEMTFSNETSVMPCEDGH--HLPTVQFDFTGIADLENKSKDSLVDIIGI 331
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C + +++ +T K+ + KR+I L+D S V TLWG++A+ FD S +PV+A+K AR
Sbjct: 332 CKNYEDVTKITVKSTNREVSKRNIYLMDMSGKVVNATLWGEDADKFDGSRQPVMAIKGAR 391
Query: 126 VSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFSTQTNTRFE-PVSQRTXXXXXXXXXX 184
VS+F GG++ NPDIPE +KL+GWF ++ +S
Sbjct: 392 VSDF-GGRSLSILSSSTVIVNPDIPEAYKLRGWFDSEGQALDGVSISDLKSGGIGGSNTN 450
Query: 185 XXXXREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCE 244
E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YRCE
Sbjct: 451 WKTLYEVKSENLGQGDKPDYFSAVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCE 510
Query: 245 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP-----A 299
KC+ EF F YR+IL V I D+ + WVT FQ AE+ILG + +GE E +
Sbjct: 511 KCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQSTAYLGELKEKNEQAFEEV 570
Query: 300 LKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F + FR+R KLE YN +I
Sbjct: 571 FQNANFRSFTFRIRVKLETYNDESRI 596
Score = 551 (199.0 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
Identities = 101/208 (48%), Positives = 152/208 (73%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRF 503
PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKLFSI+L+DESGEIRAT FN++ ++F
Sbjct: 195 PIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIRATAFNEQVDKF 254
Query: 504 HDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFV 563
+I+ +KVYY S TLK ANK+F+++ NDYEM+F++ T+V+PC + ++P+V++ F
Sbjct: 255 FPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFSNETSVMPCEDGH--HLPTVQFDFT 312
Query: 564 PLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK 623
+ + S D +D++G+C + +++ +T K+ + KR+I L+D S V TLWG+
Sbjct: 313 GIADLENKSKDSLVDIIGICKNYEDVTKITVKSTNREVSKRNIYLMDMSGKVVNATLWGE 372
Query: 624 EAETFDASNKPVIAVKAARVSEFQGNLL 651
+A+ FD S +PV+A+K ARVS+F G L
Sbjct: 373 DADKFDGSRQPVMAIKGARVSDFGGRSL 400
Score = 343 (125.8 bits), Expect = 1.8e-38, Sum P(2) = 1.8e-38
Identities = 77/209 (36%), Positives = 108/209 (51%)
Query: 582 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 641
+ I A +S G++ I D +A + E + D + + +K+
Sbjct: 385 MAIKGARVSDFGGRSLSILSSSTVIVNPDIPEAYKLRGWFDSEGQALDGVS--ISDLKSG 442
Query: 642 RVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 701
+ N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ
Sbjct: 443 GIGGSNTNWKTLYEVKSENLGQGDKPDYFSAVATVVYLRKENCMYQACPTQDCNKKVIDQ 502
Query: 702 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 761
NG+YRCEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG + +GE E
Sbjct: 503 QNGLYRCEKCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQSTAYLGELKEK 562
Query: 762 HP-----ALKKALFTQYIFRLRAKLEHYN 785
+ + A F + FR+R KLE YN
Sbjct: 563 NEQAFEEVFQNANFRSFTFRIRVKLETYN 591
Score = 144 (55.7 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
Identities = 32/74 (43%), Positives = 46/74 (62%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
DG+N S MLATQLN ++ + LS I QI R+IV+ + G R V+I+++L ++K
Sbjct: 48 DGLNTLSSFMLATQLNPLVEEERLSSNCICQINRFIVNTLKDG----RRVVILMDLEVLK 103
Query: 387 PGTEIGFKIGNPQP 400
+G KIGNP P
Sbjct: 104 SAEAVGVKIGNPVP 117
>ZFIN|ZDB-GENE-030912-3 [details] [associations]
symbol:rpa1 "replication protein A1" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007507
"heart development" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR004365 InterPro:IPR004591
InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057 ZFIN:ZDB-GENE-030912-3
GO:GO:0005634 GO:GO:0007507 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599
GeneTree:ENSGT00390000012403 KO:K07466 TIGRFAMs:TIGR00617 CTD:6117
HOGENOM:HOG000162322 HOVERGEN:HBG010502 OrthoDB:EOG4V9TQ8
EMBL:AY648787 EMBL:BC066711 IPI:IPI00481800 RefSeq:NP_956105.2
UniGene:Dr.76790 ProteinModelPortal:Q6NY74 SMR:Q6NY74 STRING:Q6NY74
PRIDE:Q6NY74 Ensembl:ENSDART00000032880 GeneID:327491
KEGG:dre:327491 InParanoid:Q6NY74 OMA:TSTIQPC NextBio:20810051
Bgee:Q6NY74 Uniprot:Q6NY74
Length = 601
Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
Identities = 129/325 (39%), Positives = 192/325 (59%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK+FSS+ NDYEM+ T++IPC ED ++P ++ FV + + D +DV+GV
Sbjct: 252 ANKQFSSLKNDYEMTLNGETSIIPC-EDS-NDVPMLQCDFVSIADLESREKDTILDVIGV 309
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAAR 125
C +A +++ + K N + KR+I L+D S + +T+WG +AETFD S +P++A+K AR
Sbjct: 310 CKNAEDVARIMTK-NSREVSKRNIQLIDMSGRVIQLTMWGSDAETFDGSGQPILAIKGAR 368
Query: 126 VSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFSTQTNTRFEPVSQRTXXXXXXXXXXX 185
+S+F GG++ NPDIPE +KL+GW+ + +
Sbjct: 369 LSDF-GGRSLSTLYSSTVMINPDIPEAYKLRGWYDKEGHALDGQSMTELRGPGGGGNTNW 427
Query: 186 XXXREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEK 245
E++++ LG GDKADY S I R N Y+ACPS+DCNKKV+DQ NGM+RCEK
Sbjct: 428 KTLAEVKNEHLGHGDKADYFSCIATIVYIRKENCLYQACPSKDCNKKVVDQQNGMFRCEK 487
Query: 246 CNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA-----L 300
C+KEF F YRL+L I D+ ++ WVT FQ+ AE++LG + +G+ + + A
Sbjct: 488 CDKEFPDFKYRLMLSANIADFGDNQWVTCFQDTAETLLGQNSSYLGQLKDTNEAAFDEVF 547
Query: 301 KKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F ++FR R KLE YN +I
Sbjct: 548 QHANFNTFVFRNRVKLETYNDESRI 572
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 138/354 (38%), Positives = 211/354 (59%)
Query: 315 KLEHYNGTKK----IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGS 370
K++ NG + + DG++ S ML+TQLN + L+ + +KR + + + G
Sbjct: 31 KIDGGNGVSRFRVMMSDGLHTMSSFMLSTQLNPMAEQNQLATNCVCVLKRSVTNVLKDG- 89
Query: 371 ATNRSVLIILELNIIKPGTEIGFKIGNPQP-LXXXXXXXXXXXXPAATNTNGSNGVHNNV 429
R V++IL++ ++K ++ KIG+P P + P A NG +
Sbjct: 90 ---RRVVVILDIEVLKSADQMPGKIGDPTPYVEGQSKAPSTAPAPTARPLQPQNGSDGST 146
Query: 430 AIPRQAS---APVVQTH---------PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSG 477
P S P+ + PI SL+PYQ+KWTI+ARVTNK+ IR W+N+RG G
Sbjct: 147 YRPSAQSFGKKPMAAPNTPGGSSKVVPIASLNPYQSKWTIRARVTNKSAIRTWSNSRGDG 206
Query: 478 KLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMS 537
KLFS++L+DESGEIRAT FN+E ++F +IE+ KV+YIS TLK ANK+FSS+ NDYEM+
Sbjct: 207 KLFSMELVDESGEIRATGFNNEVDKFFSLIEQGKVFYISKGTLKIANKQFSSLKNDYEMT 266
Query: 538 FTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTN 597
T++IPC ED ++P ++ FV + + D +DV+GVC +A +++ + K N
Sbjct: 267 LNGETSIIPC-EDS-NDVPMLQCDFVSIADLESREKDTILDVIGVCKNAEDVARIMTK-N 323
Query: 598 QKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLL 651
+ KR+I L+D S + +T+WG +AETFD S +P++A+K AR+S+F G L
Sbjct: 324 SREVSKRNIQLIDMSGRVIQLTMWGSDAETFDGSGQPILAIKGARLSDFGGRSL 377
Score = 340 (124.7 bits), Expect = 8.3e-28, P = 8.3e-28
Identities = 77/209 (36%), Positives = 111/209 (53%)
Query: 582 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 641
+ I A LS G++ Y + D +A + KE D + +
Sbjct: 362 LAIKGARLSDFGGRSLSTLYSSTVMINPDIPEAYKLRGWYDKEGHALDGQSMTELRGPGG 421
Query: 642 RVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQ 701
+ N + E++++ LG GDKADY S I R N Y+ACPS+DCNKKV+DQ
Sbjct: 422 GGNT---NWKTLAEVKNEHLGHGDKADYFSCIATIVYIRKENCLYQACPSKDCNKKVVDQ 478
Query: 702 NNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED 761
NGM+RCEKC+KEF F YRL+L I D+ ++ WVT FQ+ AE++LG + +G+ +
Sbjct: 479 QNGMFRCEKCDKEFPDFKYRLMLSANIADFGDNQWVTCFQDTAETLLGQNSSYLGQLKDT 538
Query: 762 HPA-----LKKALFTQYIFRLRAKLEHYN 785
+ A + A F ++FR R KLE YN
Sbjct: 539 NEAAFDEVFQHANFNTFVFRNRVKLETYN 567
>SGD|S000000065 [details] [associations]
symbol:RFA1 "Subunit of heterotrimeric Replication Protein A
(RPA)" species:4932 "Saccharomyces cerevisiae" [GO:0000781
"chromosome, telomeric region" evidence=IMP] [GO:0000722 "telomere
maintenance via recombination" evidence=IGI] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA;IMP] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=IMP;IPI] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IMP] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0045184 "establishment of protein
localization" evidence=IPI] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IDA] [GO:0007004 "telomere maintenance via telomerase"
evidence=IPI] [GO:0005662 "DNA replication factor A complex"
evidence=IDA] [GO:0000794 "condensed nuclear chromosome"
evidence=IDA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IGI] [GO:0030491 "heteroduplex
formation" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 SGD:S000000065 GO:GO:0005737
EMBL:BK006935 GO:GO:0046872 GO:GO:0043565 GO:GO:0016567
GO:GO:0045184 GO:GO:0003690 GO:GO:0003697 GO:GO:0000724
GO:GO:0000794 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0000781 GO:GO:0007131 GO:GO:0007004 GO:GO:0000722
GO:GO:0006289 EMBL:L22015 GO:GO:0006268 GO:GO:0005662
InterPro:IPR013955 Pfam:PF08646 GO:GO:0030491 eggNOG:COG1599
GeneTree:ENSGT00390000012403 KO:K07466 OMA:IKARVSY
TIGRFAMs:TIGR00617 HOGENOM:HOG000162322 OrthoDB:EOG4F7RTC
EMBL:X59748 EMBL:M60262 EMBL:S64901 PIR:S20145 RefSeq:NP_009404.1
PDB:1YNX PDBsum:1YNX ProteinModelPortal:P22336 SMR:P22336
DIP:DIP-2512N IntAct:P22336 MINT:MINT-476157 STRING:P22336
PaxDb:P22336 PeptideAtlas:P22336 EnsemblFungi:YAR007C GeneID:851266
KEGG:sce:YAR007C CYGD:YAR007c EvolutionaryTrace:P22336
NextBio:968234 Genevestigator:P22336 GermOnline:YAR007C
Uniprot:P22336
Length = 621
Score = 465 (168.7 bits), Expect = 1.4e-43, P = 1.4e-43
Identities = 105/342 (30%), Positives = 180/342 (52%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA +F+++ + YE++ T + C ++ N+P + F+ L I + N+DVLG
Sbjct: 264 PAKPQFTNLTHPYELNLDRDTVIEECFDES--NVPKTHFNFIKLDAIQNQEVNSNVDVLG 321
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAA 124
+ +T + +K + +RDIT+VD S S+++ LW ++A F+ V A+K
Sbjct: 322 IIQTINPHFELTSRAGKK-FDRRDITIVDDSGFSISVGLWNQQALDFNLPEGSVAAIKGV 380
Query: 125 RVSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFSTQ-TNTRF-----EP-VSQRTXXX 177
RV++F GGK+ NP+IPE + L+GW+ ++ N F EP + ++
Sbjct: 381 RVTDF-GGKSLSMGFSSTLIPNPEIPEAYALKGWYDSKGRNANFITLKQEPGMGGQSAAS 439
Query: 178 XXXXXXXXXXXREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQN 237
Q + LG +K D+ SV+ I + N Y AC +++CNKKV++Q
Sbjct: 440 LTKFIAQRITIARAQAENLGRSEKGDFFSVKAAISFLKVDNFAYPACSNENCNKKVLEQP 499
Query: 238 NGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDH 297
+G +RCEKC+ +R IL + I D TN +W+TLF ++A+ +LGV A + E+
Sbjct: 500 DGTWRCEKCDTNNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEED 559
Query: 298 P----ALKKAL-FTQYIFRLRAKLEHYNGTKKIPDGV-NINS 333
P + +++ +Y FR+RA+ + YN +I V N++S
Sbjct: 560 PNEFTKITQSIQMNEYDFRIRAREDTYNDQSRIRYTVANLHS 601
Score = 426 (155.0 bits), Expect = 2.8e-61, Sum P(3) = 2.8e-61
Identities = 85/216 (39%), Positives = 133/216 (61%)
Query: 441 QTHPIVS---LSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFN 497
+T PI + LSPYQN WTIKARV+ K I+ W+N RG GKLF+++ LD SGEIRAT FN
Sbjct: 180 KTRPIFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEIRATAFN 239
Query: 498 DECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPS 557
D +F++++++ KVYY+S L+PA +F+++ + YE++ T + C ++ N+P
Sbjct: 240 DFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFDES--NVPK 297
Query: 558 VKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVT 617
+ F+ L I + N+DVLG+ +T + +K + +RDIT+VD S S++
Sbjct: 298 THFNFIKLDAIQNQEVNSNVDVLGIIQTINPHFELTSRAGKK-FDRRDITIVDDSGFSIS 356
Query: 618 MTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLLM 653
+ LW ++A F+ V A+K RV++F G L M
Sbjct: 357 VGLWNQQALDFNLPEGSVAAIKGVRVTDFGGKSLSM 392
Score = 257 (95.5 bits), Expect = 2.8e-61, Sum P(3) = 2.8e-61
Identities = 55/170 (32%), Positives = 95/170 (55%)
Query: 622 GKEAETFDASNKPVIAVK-AARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFR 680
G+ A +P + + AA +++F + + Q + LG +K D+ SV+ I +
Sbjct: 418 GRNANFITLKQEPGMGGQSAASLTKFIAQRITIARAQAENLGRSEKGDFFSVKAAISFLK 477
Query: 681 GSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLF 740
N Y AC +++CNKKV++Q +G +RCEKC+ +R IL + I D TN +W+TLF
Sbjct: 478 VDNFAYPACSNENCNKKVLEQPDGTWRCEKCDTNNARPNWRYILTISIIDETNQLWLTLF 537
Query: 741 QNEAESILGVTAQEVGESTEDHP----ALKKAL-FTQYIFRLRAKLEHYN 785
++A+ +LGV A + E+ P + +++ +Y FR+RA+ + YN
Sbjct: 538 DDQAKQLLGVDANTLMSLKEEDPNEFTKITQSIQMNEYDFRIRAREDTYN 587
Score = 40 (19.1 bits), Expect = 2.8e-61, Sum P(3) = 2.8e-61
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 23 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI 60
HS + + NE + N P+ I ++SP +N+
Sbjct: 159 HSNSNLNANERKFANENPNSQKTRPIFAIEQLSPYQNV 196
Score = 40 (19.1 bits), Expect = 7.5e-18, Sum P(2) = 7.5e-18
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 540 HSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENI 577
HS + + NE + N P+ I ++SP +N+
Sbjct: 159 HSNSNLNANERKFANENPNSQKTRPIFAIEQLSPYQNV 196
>TAIR|locus:2163553 [details] [associations]
symbol:RPA70C species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006260 "DNA replication" evidence=IEA;ISS] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057
SMART:SM00343 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AB018113 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 KO:K07466 TIGRFAMs:TIGR00617
HOGENOM:HOG000162322 HSSP:P27694 OMA:RWTIKVR IPI:IPI00525234
RefSeq:NP_199353.1 UniGene:At.30014 ProteinModelPortal:Q9FHJ6
SMR:Q9FHJ6 STRING:Q9FHJ6 PaxDb:Q9FHJ6 PRIDE:Q9FHJ6
EnsemblPlants:AT5G45400.1 GeneID:834576 KEGG:ath:AT5G45400
TAIR:At5g45400 InParanoid:Q9FHJ6 PhylomeDB:Q9FHJ6
ProtClustDB:CLSN2687493 Genevestigator:Q9FHJ6 Uniprot:Q9FHJ6
Length = 853
Score = 418 (152.2 bits), Expect = 5.8e-36, P = 5.8e-36
Identities = 102/341 (29%), Positives = 165/341 (48%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K F+ + NDYE+ ++T+ PC +D G +P + F + I + + DV+G
Sbjct: 380 PAQKNFNHLPNDYEIHLDSASTIQPCEDD--GTIPRYHFHFRNIGDIENMENNSTTDVIG 437
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK--EAE------TFDASNK 116
+ + ++ K N KR + L D S SV +T+WG AE D+
Sbjct: 438 IVSSISPTVAIMRK-NLTEVQKRSLQLKDMSGRSVEVTMWGNFCNAEGQKLQNLCDSGVF 496
Query: 117 PVIAVKAARVSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTX 175
PV+A+KA R+ EF G K PD PE +L+ W+ + N F +S+
Sbjct: 497 PVLALKAGRIGEFNG-KQVSTIGASQFFIEPDFPEARELRQWYEREGRNAHFTSISREFS 555
Query: 176 XXXXXXXXXXXXXREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNK 231
+I+D++LG +K D+ +V I + N Y ACP + C+K
Sbjct: 556 GVGRQEVRKVIA--QIKDEKLGTSEKPDWITVCATISFMKVENFCYTACPIMNGDRPCSK 613
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE-- 289
KV + +G +RCEKC+K + YR IL + + D T+ W T FQ E I+G++A++
Sbjct: 614 KVTNNGDGTWRCEKCDKCVDECDYRYILQIQLQDHTDLTWATAFQEAGEEIMGMSAKDLY 673
Query: 290 -VGESTEDHPA----LKKALFTQYIFRLRAKLEHYNGTKKI 325
V +D ++ FT+YIF+L+ K E Y+ +++
Sbjct: 674 YVKYENQDEEKFEDIIRSVAFTKYIFKLKIKEETYSDEQRV 714
Score = 400 (145.9 bits), Expect = 4.4e-58, Sum P(3) = 4.4e-58
Identities = 90/231 (38%), Positives = 128/231 (55%)
Query: 427 NNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD 486
N + R + P + +PI +L+PYQ +WTIK RVT+K +R +NN RG GKLFS DLLD
Sbjct: 286 NRGPVARNEAPPRI--NPIAALNPYQGRWTIKVRVTSKADLRRFNNPRGEGKLFSFDLLD 343
Query: 487 -ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVI 545
+ GEIR T FND ++F D I VY IS LKPA K F+ + NDYE+ ++T+
Sbjct: 344 ADGGEIRVTCFNDAVDQFFDKIVVGNVYLISRGNLKPAQKNFNHLPNDYEIHLDSASTIQ 403
Query: 546 PCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRD 605
PC +D G +P + F + I + + DV+G+ + ++ K N KR
Sbjct: 404 PCEDD--GTIPRYHFHFRNIGDIENMENNSTTDVIGIVSSISPTVAIMRK-NLTEVQKRS 460
Query: 606 ITLVDQSQASVTMTLWGK----EAETF----DASNKPVIAVKAARVSEFQG 648
+ L D S SV +T+WG E + D+ PV+A+KA R+ EF G
Sbjct: 461 LQLKDMSGRSVEVTMWGNFCNAEGQKLQNLCDSGVFPVLALKAGRIGEFNG 511
Score = 229 (85.7 bits), Expect = 4.4e-58, Sum P(3) = 4.4e-58
Identities = 49/145 (33%), Positives = 81/145 (55%)
Query: 652 LMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNKKVIDQNNGMYR 707
++ +I+D++LG +K D+ +V I + N Y ACP + C+KKV + +G +R
Sbjct: 565 VIAQIKDEKLGTSEKPDWITVCATISFMKVENFCYTACPIMNGDRPCSKKVTNNGDGTWR 624
Query: 708 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE---VGESTEDHPA 764
CEKC+K + YR IL + + D T+ W T FQ E I+G++A++ V +D
Sbjct: 625 CEKCDKCVDECDYRYILQIQLQDHTDLTWATAFQEAGEEIMGMSAKDLYYVKYENQDEEK 684
Query: 765 ----LKKALFTQYIFRLRAKLEHYN 785
++ FT+YIF+L+ K E Y+
Sbjct: 685 FEDIIRSVAFTKYIFKLKIKEETYS 709
Score = 90 (36.7 bits), Expect = 4.4e-58, Sum P(3) = 4.4e-58
Identities = 29/112 (25%), Positives = 54/112 (48%)
Query: 289 EVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTK-KIPDGVNINSFAMLATQLNDIITD 347
EV T+ P L+ +L E N K + DG ++ + ML T LN ++
Sbjct: 17 EVTSETDMMPVLQVTELKLIQSKLHQNQESSNRYKFLLSDGTDLAA-GMLNTSLNSLVNQ 75
Query: 348 GTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGFKIGNPQ 399
GT+ +++++ YI + + + R +++I++L +I I IGNP+
Sbjct: 76 GTIQLGSVIRLTHYICNLIQT-----RRIVVIMQLEVIVEKCNI---IGNPK 119
>TAIR|locus:2134766 [details] [associations]
symbol:AT4G19130 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=RCA] [GO:0010332 "response to gamma radiation"
evidence=RCA] InterPro:IPR001878 InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057
PROSITE:PS50158 SMART:SM00343 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR013955 Pfam:PF08646
KO:K07466 TIGRFAMs:TIGR00617 OMA:QNKWVIK IPI:IPI00546271
RefSeq:NP_567576.2 UniGene:At.26624 UniGene:At.73929
ProteinModelPortal:F4JSG3 SMR:F4JSG3 PRIDE:F4JSG3
EnsemblPlants:AT4G19130.1 GeneID:827651 KEGG:ath:AT4G19130
Uniprot:F4JSG3
Length = 784
Score = 424 (154.3 bits), Expect = 9.4e-37, P = 9.4e-37
Identities = 107/343 (31%), Positives = 171/343 (49%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDEN---ID 61
PA K F+ + NDYE+ +++T+ C E++ +P ++ F +TI +I EN +D
Sbjct: 309 PAQKNFNHLRNDYEIMLDNASTIKQCYEEDAA-IPRHQFHF---RTIGDIESMENNCIVD 364
Query: 62 VLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK--EAE------TFDA 113
V+G+ + ++T K T KR + L D S SV +T+WG AE D+
Sbjct: 365 VIGIVSSISPTVTITRKNGTAT-PKRSLQLKDMSGRSVEVTMWGDFCNAEGQRLQSLCDS 423
Query: 114 SNKPVIAVKAARVSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFSTQTNTRFEPVSQR 173
PV+AVKA R+SEF G KT +PD E KL+ WF + + +S
Sbjct: 424 GVFPVLAVKAGRISEFNG-KTVSTIGSSQLFIDPDFVEAEKLKNWFEREGKS-VPCISLS 481
Query: 174 TXXXXXXXXXXXXXXREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDC 229
+I+D++LG +K D+ +V I + N Y ACP + C
Sbjct: 482 REFSGSGKVDVRKTISQIKDEKLGTSEKPDWITVSATILYLKFDNFCYTACPIMNGDRPC 541
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
+KKV D +G +RCEKC+K + YR IL + I D T+ VT FQ E I+G++A++
Sbjct: 542 SKKVTDNGDGTWRCEKCDKSVDECDYRYILQLQIQDHTDLTCVTAFQEAGEEIMGISAKD 601
Query: 290 VGESTEDHP-------ALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ +H ++K FT+Y F+L+ K E ++ +++
Sbjct: 602 LYYVKNEHKDEEKFEDIIRKVAFTKYNFKLKVKEETFSDEQRV 644
Score = 388 (141.6 bits), Expect = 1.4e-57, Sum P(3) = 1.4e-57
Identities = 90/234 (38%), Positives = 136/234 (58%)
Query: 427 NNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD 486
N + R + P + P+ +LSPY +WTIKARVTNK +++++N RG GK+F+ DLLD
Sbjct: 215 NRGPVARNEAPPKII--PVNALSPYSGRWTIKARVTNKAALKQYSNPRGEGKVFNFDLLD 272
Query: 487 -ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVI 545
+ GEIR T FN ++F+D I +Y IS +L+PA K F+ + NDYE+ +++T+
Sbjct: 273 ADGGEIRVTCFNAVADQFYDQIVVGNLYLISRGSLRPAQKNFNHLRNDYEIMLDNASTIK 332
Query: 546 PCNEDEVGNMPSVKYCFVPLKTIAEISPDEN---IDVLGVCIDAAELSSVTGKTNQKTYM 602
C E++ +P ++ F +TI +I EN +DV+G+ + ++T K T
Sbjct: 333 QCYEEDAA-IPRHQFHF---RTIGDIESMENNCIVDVIGIVSSISPTVTITRKNGTAT-P 387
Query: 603 KRDITLVDQSQASVTMTLWGK--EAE------TFDASNKPVIAVKAARVSEFQG 648
KR + L D S SV +T+WG AE D+ PV+AVKA R+SEF G
Sbjct: 388 KRSLQLKDMSGRSVEVTMWGDFCNAEGQRLQSLCDSGVFPVLAVKAGRISEFNG 441
Score = 232 (86.7 bits), Expect = 1.4e-57, Sum P(3) = 1.4e-57
Identities = 54/172 (31%), Positives = 90/172 (52%)
Query: 628 FDASNKPVIAVKAARVSEFQGNLLLMR---EIQDQQLGMGDKADYCSVRGIIQVFRGSNT 684
F+ K V + +R G + + + +I+D++LG +K D+ +V I + N
Sbjct: 468 FEREGKSVPCISLSREFSGSGKVDVRKTISQIKDEKLGTSEKPDWITVSATILYLKFDNF 527
Query: 685 TYKACP----SQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLF 740
Y ACP + C+KKV D +G +RCEKC+K + YR IL + I D T+ VT F
Sbjct: 528 CYTACPIMNGDRPCSKKVTDNGDGTWRCEKCDKSVDECDYRYILQLQIQDHTDLTCVTAF 587
Query: 741 QNEAESILGVTAQEVGESTEDHP-------ALKKALFTQYIFRLRAKLEHYN 785
Q E I+G++A+++ +H ++K FT+Y F+L+ K E ++
Sbjct: 588 QEAGEEIMGISAKDLYYVKNEHKDEEKFEDIIRKVAFTKYNFKLKVKEETFS 639
Score = 93 (37.8 bits), Expect = 1.4e-57, Sum P(3) = 1.4e-57
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG ++ ML T LN+++ +GTL +IV++ R+ V V G R ++I+ +L +
Sbjct: 51 LSDGTYLHQ-GMLGTDLNNLVKEGTLQPGSIVRLTRF-VGDVIKG----RRIVIVPQLEV 104
Query: 385 IKPGTEIGFKIGNPQP 400
+K ++I IG+P P
Sbjct: 105 LKQISDI---IGHPVP 117
>CGD|CAL0004564 [details] [associations]
symbol:RFA1 species:5476 "Candida albicans" [GO:0000781
"chromosome, telomeric region" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000794 "condensed nuclear chromosome"
evidence=IEA] [GO:0005662 "DNA replication factor A complex"
evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
evidence=IEA] [GO:0045184 "establishment of protein localization"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0006268 "DNA unwinding involved in replication" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0007131
"reciprocal meiotic recombination" evidence=IEA] [GO:0030491
"heteroduplex formation" evidence=IEA] [GO:0007004 "telomere
maintenance via telomerase" evidence=IEA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] InterPro:IPR004365 InterPro:IPR004591
InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057 CGD:CAL0004564
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AACQ01000031
EMBL:AACQ01000030 InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599
KO:K07466 TIGRFAMs:TIGR00617 HOGENOM:HOG000162322
RefSeq:XP_719539.1 RefSeq:XP_719663.1 ProteinModelPortal:Q5ACX4
STRING:Q5ACX4 GeneID:3638744 GeneID:3638823 KEGG:cal:CaO19.2093
KEGG:cal:CaO19.9640 Uniprot:Q5ACX4
Length = 624
Score = 426 (155.0 bits), Expect = 2.8e-56, Sum P(2) = 2.8e-56
Identities = 85/243 (34%), Positives = 140/243 (57%)
Query: 414 PAATNTNG-SNGVHNNVAIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNN 472
P A +TN + V VA + + + PI ++SPYQN WTIKARV+ K +R W+N
Sbjct: 152 PLAQSTNSFKSEVGGGVAAQSKPAGTHRKVSPIETISPYQNNWTIKARVSYKGDLRTWSN 211
Query: 473 ARGSGKLFSIDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINN 532
++G GK+F +LLDES EI+A+ FN+ R H ++E+ KVYYIS + A KKF+++++
Sbjct: 212 SKGEGKVFGFNLLDESDEIKASAFNETAERAHKLLEEGKVYYISKARVAAARKKFNTLSH 271
Query: 533 DYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSV 592
YE++F T + C ++ ++P + + FV L + + + IDVLG +
Sbjct: 272 PYELTFDKDTEITECFDES--DVPKLNFNFVKLDQVQNLEANAIIDVLGALKTVFPPFQI 329
Query: 593 TGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLL 652
T K+ K + +R+I +VD++ + + LW A F+ V+AVK +VS++ G L
Sbjct: 330 TAKSTGKVFDRRNILVVDETGFGIELGLWNNTATDFNIEEGTVVAVKGCKVSDYDGRTLS 389
Query: 653 MRE 655
+ +
Sbjct: 390 LTQ 392
Score = 420 (152.9 bits), Expect = 6.7e-37, P = 6.7e-37
Identities = 99/353 (28%), Positives = 171/353 (48%)
Query: 4 APANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVL 63
A A KKF+++++ YE++F T + C ++ ++P + + FV L + + + IDVL
Sbjct: 260 AAARKKFNTLSHPYELTFDKDTEITECFDES--DVPKLNFNFVKLDQVQNLEANAIIDVL 317
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNKPVIAVKA 123
G +T K+ K + +R+I +VD++ + + LW A F+ V+AVK
Sbjct: 318 GALKTVFPPFQITAKSTGKVFDRRNILVVDETGFGIELGLWNNTATDFNIEEGTVVAVKG 377
Query: 124 ARVSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFST-QTNTRFEPVSQRTXXXXXXXX 182
+VS++ G +T NP PE KL+GW+ + F+ +
Sbjct: 378 CKVSDYDG-RTLSLTQAGSIIPNPGTPESFKLKGWYDNIGIHESFKSLKIDNAGSGGDKI 436
Query: 183 XXXXXXREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS-----------QDCNK 231
+ ++ G +K DY S++ + + N Y ACP+ Q CNK
Sbjct: 437 SQRISINQALEEHSGSTEKPDYFSIKASVTFCKPENFAYPACPNLVQNADATRPAQVCNK 496
Query: 232 KVIDQNN-GMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 290
K++ Q+N G +RCE+C K + T+R +L + D T +WVTLF ++AE +LG+ A E+
Sbjct: 497 KLVFQDNDGTWRCERCAKTYEEPTWRYVLSCSVTDSTGHMWVTLFNDQAEKLLGIDATEL 556
Query: 291 GESTED-----HPALKKALFTQYIFRLRAKLEHYNG---TKKIPDGVNINSFA 335
+ E + + LF ++ R++AK E YN T+ G+N +A
Sbjct: 557 VKKKEQKSEVANQIMNNTLFKEFSLRVKAKQETYNDELKTRYSAAGINELDYA 609
Score = 216 (81.1 bits), Expect = 2.8e-56, Sum P(2) = 2.8e-56
Identities = 48/145 (33%), Positives = 78/145 (53%)
Query: 658 DQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS-----------QDCNKKVIDQNN-GM 705
++ G +K DY S++ + + N Y ACP+ Q CNKK++ Q+N G
Sbjct: 447 EEHSGSTEKPDYFSIKASVTFCKPENFAYPACPNLVQNADATRPAQVCNKKLVFQDNDGT 506
Query: 706 YRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTED---- 761
+RCE+C K + T+R +L + D T +WVTLF ++AE +LG+ A E+ + E
Sbjct: 507 WRCERCAKTYEEPTWRYVLSCSVTDSTGHMWVTLFNDQAEKLLGIDATELVKKKEQKSEV 566
Query: 762 -HPALKKALFTQYIFRLRAKLEHYN 785
+ + LF ++ R++AK E YN
Sbjct: 567 ANQIMNNTLFKEFSLRVKAKQETYN 591
Score = 45 (20.9 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 342 NDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNII-KPGTEIGFKI 395
N+ TD + E T+V +K G R++ + +II PGT FK+
Sbjct: 359 NNTATDFNIEEGTVVAVK-----GCKVSDYDGRTLSLTQAGSIIPNPGTPESFKL 408
>UNIPROTKB|Q65XV7 [details] [associations]
symbol:P0016H04.11 "Os05g0111000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001878 InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF00098 Pfam:PF01336
Pfam:PF04057 PROSITE:PS50158 SMART:SM00343 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0008270
EMBL:AP008211 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:CM000142 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 KO:K07466 TIGRFAMs:TIGR00617
HOGENOM:HOG000162322 EMBL:AC079356 RefSeq:NP_001054445.1
UniGene:Os.53618 IntAct:Q65XV7 EnsemblPlants:LOC_Os05g02040.1
GeneID:4337594 KEGG:osa:4337594 OMA:RWTIKVR ProtClustDB:CLSN2695308
Uniprot:Q65XV7
Length = 951
Score = 402 (146.6 bits), Expect = 6.2e-53, Sum P(3) = 6.2e-53
Identities = 88/215 (40%), Positives = 134/215 (62%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIRATMFNDECNR 502
PI +L+PYQ KWTIKARVT K+ IR W+NAR SG +FS DLLD + GEIRA + + ++
Sbjct: 309 PITALNPYQPKWTIKARVTAKSDIRHWSNARSSGTVFSFDLLDAQGGEIRAQCWKESADK 368
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHS-TTVIPCNEDEVGNMPSVKYC 561
F IE +VY IS +LKPA KK++++N+DYE++ +TV C++D+ ++P ++Y
Sbjct: 369 FFGQIEVGRVYLISRGSLKPAQKKYNTLNHDYEITLDIGLSTVEVCSDDD-NSIPRLQYN 427
Query: 562 FVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW 621
F + + ++ + +D+LGV + +++ K +T KR I L D S S+ +TLW
Sbjct: 428 FRQISELENMANETIVDLLGVVTSVSPSATIMRKIGTET-RKRSIQLKDLSGRSIEVTLW 486
Query: 622 GK--EAE------TFDASNKPVIAVKAARVSEFQG 648
G +AE D+ + P+IA K ARV +F G
Sbjct: 487 GNFCDAEGQQLQLQCDSGSNPIIAFKGARVGDFNG 521
Score = 389 (142.0 bits), Expect = 1.2e-31, Sum P(3) = 1.2e-31
Identities = 99/343 (28%), Positives = 168/343 (48%)
Query: 5 PANKKFSSINNDYEMSFTHS-TTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVL 63
PA KK++++N+DYE++ +TV C++D+ ++P ++Y F + + ++ + +D+L
Sbjct: 388 PAQKKYNTLNHDYEITLDIGLSTVEVCSDDD-NSIPRLQYNFRQISELENMANETIVDLL 446
Query: 64 GVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGK--EAE------TFDASN 115
GV + +++ K +T KR I L D S S+ +TLWG +AE D+ +
Sbjct: 447 GVVTSVSPSATIMRKIGTET-RKRSIQLKDLSGRSIEVTLWGNFCDAEGQQLQLQCDSGS 505
Query: 116 KPVIAVKAARVSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFSTQTNTRFEP-VSQRT 174
P+IA K ARV +F G K+ NPD PE +L+ W+ T+ T P +S
Sbjct: 506 NPIIAFKGARVGDFNG-KSVSTIGSTQLIINPDFPEVERLRQWYMTEGKTA--PCISLSR 562
Query: 175 XXXXXXXXXXXXXXREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS-----QDC 229
+I+D+ LG +K D+ +V+ I + Y ACP + C
Sbjct: 563 EMLNMGRTDARKTIAQIKDENLGRLEKPDWITVKAAISHVTTESFCYPACPKLLPVGRQC 622
Query: 230 NKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE 289
NKK I+ +GM+ C++C++ F YR +L I D T S + + F E I G A E
Sbjct: 623 NKKAINNGDGMWHCDRCDESFQNPEYRYMLRFQIQDHTGSTYASAFDEAGEQIFGRKAGE 682
Query: 290 ---VGESTEDHPALKKAL----FTQYIFRLRAKLEHYNGTKKI 325
+ +D + + + Y+F+L+ K E YN + +
Sbjct: 683 LFSIRNVDQDDAQFAEIIEGVRWHLYLFKLKVKEETYNDEQSL 725
Score = 180 (68.4 bits), Expect = 6.2e-53, Sum P(3) = 6.2e-53
Identities = 43/143 (30%), Positives = 70/143 (48%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS-----QDCNKKVIDQNNGMYRCE 709
+I+D+ LG +K D+ +V+ I + Y ACP + CNKK I+ +GM+ C+
Sbjct: 578 QIKDENLGRLEKPDWITVKAAISHVTTESFCYPACPKLLPVGRQCNKKAINNGDGMWHCD 637
Query: 710 KCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQE---VGESTEDHPALK 766
+C++ F YR +L I D T S + + F E I G A E + +D
Sbjct: 638 RCDESFQNPEYRYMLRFQIQDHTGSTYASAFDEAGEQIFGRKAGELFSIRNVDQDDAQFA 697
Query: 767 KAL----FTQYIFRLRAKLEHYN 785
+ + + Y+F+L+ K E YN
Sbjct: 698 EIIEGVRWHLYLFKLKVKEETYN 720
Score = 91 (37.1 bits), Expect = 6.2e-53, Sum P(3) = 6.2e-53
Identities = 22/75 (29%), Positives = 44/75 (58%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DGVN +MLAT LN ++ D TL T+VQ+ ++ + + + ++I+++L++
Sbjct: 54 LSDGVNTQQ-SMLATALNPLVKDATLRPGTVVQLTDFMCNTIQG-----KRIIIVVKLDV 107
Query: 385 IKPGTEIGFKIGNPQ 399
++ + IGNP+
Sbjct: 108 LQNDCIV---IGNPK 119
Score = 44 (20.5 bits), Expect = 9.4e-39, Sum P(3) = 9.4e-39
Identities = 14/59 (23%), Positives = 23/59 (38%)
Query: 655 EIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNK 713
++Q+ G +Y S+ G GS+ YK + Q+ G C KC +
Sbjct: 836 DMQETSAGGSSMGNYNSIAG-----NGSSECYKCKQPGHYARDCPGQSTGGLECFKCKQ 889
Score = 37 (18.1 bits), Expect = 1.2e-31, Sum P(3) = 1.2e-31
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 416 ATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLS 449
A NT G N +I S P+ T + + S
Sbjct: 784 AMNTGGVNQFGQQASISAGMSTPLAATRNLQTCS 817
>TAIR|locus:2142808 [details] [associations]
symbol:RPA70B "RPA70-kDa subunit B" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IEA] [GO:0006260 "DNA replication"
evidence=ISS;RCA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0010224 "response to UV-B" evidence=IMP] [GO:0000278 "mitotic
cell cycle" evidence=RCA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=RCA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0009555 "pollen development" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010389
"regulation of G2/M transition of mitotic cell cycle" evidence=RCA]
[GO:0016444 "somatic cell DNA recombination" evidence=RCA]
[GO:0016458 "gene silencing" evidence=RCA] [GO:0016568 "chromatin
modification" evidence=RCA] [GO:0031047 "gene silencing by RNA"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] [GO:0051567 "histone H3-K9 methylation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR004365 InterPro:IPR004591 InterPro:IPR007199
Pfam:PF01336 Pfam:PF04057 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0010224
EMBL:AL133421 InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599
KO:K07466 TIGRFAMs:TIGR00617 HOGENOM:HOG000162322 HSSP:P27694
ProtClustDB:CLSN2686716 IPI:IPI00535797 PIR:T45627
RefSeq:NP_196419.1 UniGene:At.54774 ProteinModelPortal:Q9SD82
SMR:Q9SD82 STRING:Q9SD82 EnsemblPlants:AT5G08020.1 GeneID:830696
KEGG:ath:AT5G08020 TAIR:At5g08020 InParanoid:Q9SD82 OMA:VVRISEF
PhylomeDB:Q9SD82 Genevestigator:Q9SD82 Uniprot:Q9SD82
Length = 604
Score = 452 (164.2 bits), Expect = 3.8e-42, P = 3.8e-42
Identities = 115/323 (35%), Positives = 173/323 (53%)
Query: 335 AML-ATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIKPGTEIGF 393
AML AT +DII+ G + ++++ Y V+ + S ++ E +EI
Sbjct: 55 AMLPATLTSDIIS-GKIQNLGLIRLLEYTVNDIPGKSEEKYMLITKCEAVASALDSEIKA 113
Query: 394 KIGNPQPLXXXXXXXXXXXXPAATNTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQN 453
+I + A+ N G N A P A + HP+VSL+PYQ
Sbjct: 114 EIKASTGIMLKPKHEFVAKS-ASQIINEQRG---NAA-PAARMAMTRRVHPLVSLNPYQG 168
Query: 454 KWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG-EIRATMFNDECNRFHDMIEKDKV 512
WTIK RVTNK +R + NARG G +F+++L DE G +I+ATMFN +F+D E KV
Sbjct: 169 SWTIKVRVTNKGVMRTYKNARGEGCVFNVELTDEEGTQIQATMFNAAARKFYDRFEMGKV 228
Query: 513 YYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE-I 571
YYIS +LK ANK+F ++ NDYEM+ ++ V + +E+ P K+ FVP+ + +
Sbjct: 229 YYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASNEEMFT-PETKFNFVPIDELGTYV 287
Query: 572 SPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----E 626
+ + IDV+GV + S+ K + + KRDITL D+++ +V ++LW A E
Sbjct: 288 NQKDLIDVIGVVQSVSPTMSIRRKNDNEMIPKRDITLADETKKTVVVSLWNDLATGIGQE 347
Query: 627 TFD-ASNKPVIAVKAARVSEFQG 648
D A N PVIA+K+ +V FQG
Sbjct: 348 LLDMADNHPVIAIKSLKVGAFQG 370
Score = 397 (144.8 bits), Expect = 2.6e-34, P = 2.6e-34
Identities = 101/340 (29%), Positives = 162/340 (47%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAE-ISPDENIDVLG 64
ANK+F ++ NDYEM+ ++ V + +E+ P K+ FVP+ + ++ + IDV+G
Sbjct: 239 ANKQFKTVQNDYEMTLNENSEVEEASNEEMFT-PETKFNFVPIDELGTYVNQKDLIDVIG 297
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ETFD-ASNKPV 118
V + S+ K + + KRDITL D+++ +V ++LW A E D A N PV
Sbjct: 298 VVQSVSPTMSIRRKNDNEMIPKRDITLADETKKTVVVSLWNDLATGIGQELLDMADNHPV 357
Query: 119 IAVKAARVSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTXXX 177
IA+K+ +V FQG + NP+ PE KL+ W+ + T +
Sbjct: 358 IAIKSLKVGAFQG-VSLSTISRSNVVINPNSPEATKLKSWYDAEGKETSMSAIGSGMSSS 416
Query: 178 XXXXXXXXXXXREI-----QDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDCNK 231
R + LG +K + S R I + T Y+AC + CNK
Sbjct: 417 ANNGSRSMYSDRVFLSHITSNPSLGE-EKPVFFSTRAYISFIKPDQTMWYRACKT--CNK 473
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV- 290
KV + + Y CE C K+ + R I+ V + D T W++ F +EAE I+G TA ++
Sbjct: 474 KVTEAMDSGYWCESCQKKDQECSLRYIMAVKVSDSTGETWLSAFNDEAEKIIGCTADDLN 533
Query: 291 ------GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKK 324
GE E LK+A ++ ++FR+ + YN K+
Sbjct: 534 DLKSEEGEVNEFQTKLKEATWSSHLFRISVSQQEYNSEKR 573
Score = 192 (72.6 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 57/217 (26%), Positives = 98/217 (45%)
Query: 582 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW----GKEAE-TFDASNKPVI 636
+ I + ++ + G + T + ++ + S + + W GKE + S
Sbjct: 358 IAIKSLKVGAFQG-VSLSTISRSNVVINPNSPEATKLKSWYDAEGKETSMSAIGSGMSSS 416
Query: 637 AVKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDCN 695
A +R S + + L + LG +K + S R I + T Y+AC + CN
Sbjct: 417 ANNGSR-SMYSDRVFLSHITSNPSLGE-EKPVFFSTRAYISFIKPDQTMWYRACKT--CN 472
Query: 696 KKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV 755
KKV + + Y CE C K+ + R I+ V + D T W++ F +EAE I+G TA ++
Sbjct: 473 KKVTEAMDSGYWCESCQKKDQECSLRYIMAVKVSDSTGETWLSAFNDEAEKIIGCTADDL 532
Query: 756 -------GESTEDHPALKKALFTQYIFRLRAKLEHYN 785
GE E LK+A ++ ++FR+ + YN
Sbjct: 533 NDLKSEEGEVNEFQTKLKEATWSSHLFRISVSQQEYN 569
>TAIR|locus:2173527 [details] [associations]
symbol:RPA70D species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006260 "DNA replication" evidence=IEA;ISS] InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057
GO:GO:0005634 EMBL:CP002688 GO:GO:0003677 GO:GO:0006260
GO:GO:0004386 EMBL:AB006696 EMBL:AB008269 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR013955 Pfam:PF08646
KO:K07466 OMA:IKARVSY TIGRFAMs:TIGR00617 HOGENOM:HOG000162322
HSSP:P27694 EMBL:BT003950 IPI:IPI00525740 RefSeq:NP_200908.1
UniGene:At.29131 ProteinModelPortal:Q9FME0 SMR:Q9FME0 STRING:Q9FME0
EnsemblPlants:AT5G61000.1 GeneID:836221 KEGG:ath:AT5G61000
TAIR:At5g61000 InParanoid:Q9FME0 PhylomeDB:Q9FME0
ProtClustDB:CLSN2686716 ArrayExpress:Q9FME0 Genevestigator:Q9FME0
Uniprot:Q9FME0
Length = 629
Score = 451 (163.8 bits), Expect = 2.4e-41, Sum P(2) = 2.4e-41
Identities = 95/227 (41%), Positives = 141/227 (62%)
Query: 430 AIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG 489
A P A + HP+VSL+PYQ WTIK RVTNK +R + NARG G +F+++L DE G
Sbjct: 169 AAPAARMAMTRRVHPLVSLNPYQGNWTIKVRVTNKGVMRNYKNARGEGCVFNVELTDEEG 228
Query: 490 -EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
+I+ATMFND +F D + KVYYIS +LK ANK+F ++ NDYEM+ ++ V +
Sbjct: 229 TQIQATMFNDAARKFFDRFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEAS 288
Query: 549 EDEVGNMPSVKYCFVPLKTIA-EISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDIT 607
+E+ +P K+ FVP++ + ++ E ID++GV + S+ +T+ + KRDIT
Sbjct: 289 SEEMF-IPETKFNFVPIEELGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDIT 347
Query: 608 LVDQSQASVTMTLWGKEA-----ETFD-ASNKPVIAVKAARVSEFQG 648
L D+S+ +V ++LW A E D A PVIA+K+ +V +FQG
Sbjct: 348 LADESRKTVVVSLWNDLATGIGQELLDMADQSPVIAIKSLKVGDFQG 394
Score = 397 (144.8 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 100/339 (29%), Positives = 164/339 (48%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIA-EISPDENIDVLG 64
ANK+F ++ NDYEM+ ++ V + +E+ +P K+ FVP++ + ++ E ID++G
Sbjct: 263 ANKQFKTVQNDYEMTLNENSEVEEASSEEMF-IPETKFNFVPIEELGLYVNQKELIDLIG 321
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA-----ETFD-ASNKPV 118
V + S+ +T+ + KRDITL D+S+ +V ++LW A E D A PV
Sbjct: 322 VVQSVSPTMSIRRRTDNEMIPKRDITLADESRKTVVVSLWNDLATGIGQELLDMADQSPV 381
Query: 119 IAVKAARVSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTXXX 177
IA+K+ +V +FQG + NP+ PE KL+ WF ++ +
Sbjct: 382 IAIKSLKVGDFQG-VSLSTISRSNVVINPESPEAKKLKSWFDSEGKEISMSSIGSGMSPS 440
Query: 178 XXXXXXXXXXXR----EIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDCNKK 232
R I +K + S R I + T Y+AC + CNKK
Sbjct: 441 AKNGSRSLYTDRVLLSHITSNPSLFEEKPVFFSTRAYISFIKPDQTMWYQACKT--CNKK 498
Query: 233 VIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV-- 290
V + + Y CE C +++ + R I+ V + D + W++ F +EAE ILG +A E+
Sbjct: 499 VTEALDSGYWCEGCQRKYEECSLRYIMAVKVTDSSGETWISSFNDEAEKILGCSADELNK 558
Query: 291 -----GESTEDHPALKKALFTQYIFRLRAKLEHYNGTKK 324
GE E LK+A ++ ++FR+ YNG K+
Sbjct: 559 LKSEEGEVNEYQTKLKEATWSSHVFRVSVTQNEYNGEKR 597
Score = 183 (69.5 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 54/216 (25%), Positives = 96/216 (44%)
Query: 582 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW----GKEAETFDASNKPVIA 637
+ I + ++ G + T + ++ + +S + + W GKE + +
Sbjct: 382 IAIKSLKVGDFQG-VSLSTISRSNVVINPESPEAKKLKSWFDSEGKEISMSSIGSGMSPS 440
Query: 638 VKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTT-YKACPSQDCNK 696
K S + +LL + L +K + S R I + T Y+AC + CNK
Sbjct: 441 AKNGSRSLYTDRVLLSHITSNPSL-FEEKPVFFSTRAYISFIKPDQTMWYQACKT--CNK 497
Query: 697 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEV- 755
KV + + Y CE C +++ + R I+ V + D + W++ F +EAE ILG +A E+
Sbjct: 498 KVTEALDSGYWCEGCQRKYEECSLRYIMAVKVTDSSGETWISSFNDEAEKILGCSADELN 557
Query: 756 ------GESTEDHPALKKALFTQYIFRLRAKLEHYN 785
GE E LK+A ++ ++FR+ YN
Sbjct: 558 KLKSEEGEVNEYQTKLKEATWSSHVFRVSVTQNEYN 593
Score = 43 (20.2 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 18/75 (24%), Positives = 32/75 (42%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
+V L P N++T A KT ++ A + ++ S + G IR F +
Sbjct: 32 VVDLKPIGNRYTFSAN-DGKTKVKAMFTASLTPEIIS-GKIQNLGLIRLIDFT-----VN 84
Query: 505 DMIEKDKVYY-ISNC 518
D+ K Y+ ++ C
Sbjct: 85 DISSKSTKYFLVTKC 99
Score = 39 (18.8 bits), Expect = 2.4e-41, Sum P(2) = 2.4e-41
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 335 AMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGS 370
AM L I G + ++++ + V+ +SS S
Sbjct: 55 AMFTASLTPEIISGKIQNLGLIRLIDFTVNDISSKS 90
>UNIPROTKB|Q9AVL8 [details] [associations]
symbol:OsRPA70a "Replication protein A 70kDa" species:39947
"Oryza sativa Japonica Group" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004365 InterPro:IPR004591
InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057 GO:GO:0009555
GO:GO:0003677 GO:GO:0006260 GO:GO:0000790 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0007131 GO:GO:0007141
GO:GO:0051026 GO:GO:0048232 InterPro:IPR013955 Pfam:PF08646
TIGRFAMs:TIGR00617 HSSP:P27694 EMBL:AB042415
ProteinModelPortal:Q9AVL8 IntAct:Q9AVL8 STRING:Q9AVL8
KEGG:dosa:Os02t0776800-01 Gramene:Q9AVL8 Uniprot:Q9AVL8
Length = 654
Score = 456 (165.6 bits), Expect = 4.8e-41, P = 4.8e-41
Identities = 104/338 (30%), Positives = 167/338 (49%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K ++ +NN++E+ + +TV C DE ++P+ ++ F P+ I + + +D++G
Sbjct: 290 PAQKNYNHLNNEWEILLENGSTVDLC-PDENSSIPTQRFDFRPINEIEDAQNNAILDIIG 348
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWG----KEAETFDASNK---- 116
V +++ K +T KR + L D S SV +T+WG +E +
Sbjct: 349 VVTSVNPCTTIQRKNGMET-QKRTMNLKDMSGRSVEVTMWGDFCNREGSQLQGMVERGIF 407
Query: 117 PVIAVKAARVSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFSTQTNTRFEPVSQRTXX 176
PV+AVKA +VS+F G K+ NPD E H L+ WF + F R
Sbjct: 408 PVLAVKAGKVSDFSG-KSVGTISSTQFFINPDSAEAHSLRQWFDSGGRDAFTQSISRDIT 466
Query: 177 XXXXXXXXXXXXREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS----QDCNKK 232
+I+D+ LGMGDK D+ +V+ + F+ + Y ACP+ + CNKK
Sbjct: 467 PGASRNEIRKTVAQIKDEGLGMGDKPDWITVKATVIFFKNESFFYTACPNMIGDRQCNKK 526
Query: 233 VIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGE 292
V NG + C+KC++EF YR +L I D + + WVT FQ + +LG +A E+
Sbjct: 527 VTKSTNGNWTCDKCDREFEECDYRYLLQFQIQDHSGTAWVTAFQEAGQELLGCSATELNA 586
Query: 293 STE-DHP----ALKKALFTQYIFRLRAKLEHYNGTKKI 325
E + P + LF +Y+ RL+ K E Y +K+
Sbjct: 587 LKEREDPRFADTMLNCLFQEYLLRLKVKEESYGDERKV 624
Score = 390 (142.3 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 88/232 (37%), Positives = 139/232 (59%)
Query: 427 NNVAIPR-QASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLL 485
N+ AI + +A A ++ PI +L+PYQ +W IKARVT K IR ++NA+G GK+FS DLL
Sbjct: 196 NHGAIMKNEAPARII---PISALNPYQGRWAIKARVTAKGDIRRYHNAKGDGKVFSFDLL 252
Query: 486 D-ESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTV 544
D + GEIR T FN +RF++++E KVY +S L+PA K ++ +NN++E+ + +TV
Sbjct: 253 DSDGGEIRVTCFNALLDRFYEVVEVGKVYVVSRGNLRPAQKNYNHLNNEWEILLENGSTV 312
Query: 545 IPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKR 604
C DE ++P+ ++ F P+ I + + +D++GV +++ K +T KR
Sbjct: 313 DLC-PDENSSIPTQRFDFRPINEIEDAQNNAILDIIGVVTSVNPCTTIQRKNGMET-QKR 370
Query: 605 DITLVDQSQASVTMTLWG----KEAETFDASNK----PVIAVKAARVSEFQG 648
+ L D S SV +T+WG +E + PV+AVKA +VS+F G
Sbjct: 371 TMNLKDMSGRSVEVTMWGDFCNREGSQLQGMVERGIFPVLAVKAGKVSDFSG 422
Score = 254 (94.5 bits), Expect = 7.7e-23, Sum P(2) = 7.7e-23
Identities = 66/216 (30%), Positives = 109/216 (50%)
Query: 582 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW----GKEAETFDASNKPVIA 637
+ + A ++S +GK+ T + S + ++ W G++A T S I
Sbjct: 410 LAVKAGKVSDFSGKS-VGTISSTQFFINPDSAEAHSLRQWFDSGGRDAFTQSISRD--IT 466
Query: 638 VKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPS----QD 693
A+R +E + + +I+D+ LGMGDK D+ +V+ + F+ + Y ACP+ +
Sbjct: 467 PGASR-NEIRKTVA---QIKDEGLGMGDKPDWITVKATVIFFKNESFFYTACPNMIGDRQ 522
Query: 694 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 753
CNKKV NG + C+KC++EF YR +L I D + + WVT FQ + +LG +A
Sbjct: 523 CNKKVTKSTNGNWTCDKCDREFEECDYRYLLQFQIQDHSGTAWVTAFQEAGQELLGCSAT 582
Query: 754 EVGESTE-DHP----ALKKALFTQYIFRLRAKLEHY 784
E+ E + P + LF +Y+ RL+ K E Y
Sbjct: 583 ELNALKEREDPRFADTMLNCLFQEYLLRLKVKEESY 618
Score = 92 (37.4 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG +S A+ A QL+D G L +IVQ+ Y+++ V R +++IL L +
Sbjct: 48 VSDGTAASS-ALFAAQLSDHARSGALRRGSIVQLSEYVINEVGP-----RRIIVILNLEV 101
Query: 385 IKPGTEIGFKIGNPQPL 401
+ EI IGNP L
Sbjct: 102 LVSECEI---IGNPTAL 115
>TAIR|locus:2054577 [details] [associations]
symbol:RPA1A "replication protein A 1A" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IEA] [GO:0006260 "DNA replication"
evidence=IEA;ISS] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IGI;RCA]
[GO:0007141 "male meiosis I" evidence=IMP] [GO:0009555 "pollen
development" evidence=IMP] [GO:0048232 "male gamete generation"
evidence=IMP] [GO:0051026 "chiasma assembly" evidence=IMP]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0006312 "mitotic recombination"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0007062 "sister chromatid
cohesion" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0007140 "male meiosis" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009560
"embryo sac egg cell differentiation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0009845 "seed
germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010332 "response to
gamma radiation" evidence=RCA] [GO:0016444 "somatic cell DNA
recombination" evidence=RCA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0019915 "lipid storage" evidence=RCA] [GO:0032204
"regulation of telomere maintenance" evidence=RCA] [GO:0032504
"multicellular organism reproduction" evidence=RCA] [GO:0042138
"meiotic DNA double-strand break formation" evidence=RCA]
[GO:0043247 "telomere maintenance in response to DNA damage"
evidence=RCA] [GO:0043687 "post-translational protein modification"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0050826 "response to freezing"
evidence=RCA] InterPro:IPR004365 InterPro:IPR004591
InterPro:IPR007199 Pfam:PF01336 Pfam:PF04057 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0009555 GO:GO:0003677 GO:GO:0006260
GO:GO:0000790 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0007131 GO:GO:0007141 GO:GO:0051026 GO:GO:0048232
InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599 KO:K07466
TIGRFAMs:TIGR00617 HOGENOM:HOG000162322 OMA:ICQVNRF EMBL:AC006420
HSSP:P27694 UniGene:At.22213 UniGene:At.71077 EMBL:BT005946
EMBL:AK118699 IPI:IPI00523631 PIR:B84478 RefSeq:NP_178690.1
ProteinModelPortal:Q9SKI4 SMR:Q9SKI4 IntAct:Q9SKI4 STRING:Q9SKI4
PaxDb:Q9SKI4 PRIDE:Q9SKI4 EnsemblPlants:AT2G06510.1 GeneID:815209
KEGG:ath:AT2G06510 TAIR:At2g06510 InParanoid:Q9SKI4
PhylomeDB:Q9SKI4 ProtClustDB:CLSN2683265 ArrayExpress:Q9SKI4
Genevestigator:Q9SKI4 Uniprot:Q9SKI4
Length = 640
Score = 423 (154.0 bits), Expect = 3.8e-37, P = 3.8e-37
Identities = 102/341 (29%), Positives = 166/341 (48%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLG 64
PA K F+ + N++E+ F ST+ + DE G++P ++ F P+ I + +DV+G
Sbjct: 278 PAQKNFNHLKNEWEI-FLESTSTVELCPDEDGSIPKQQFSFRPISDIENAENNTILDVIG 336
Query: 65 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEA--------ETFDASNK 116
V + K +T+ +R + L D+S +V +TLWG+ E D++
Sbjct: 337 VVTSVNPSVPILRKNGMETH-RRILNLKDESGKAVEVTLWGEFCNRDGRQLEEMVDSAFH 395
Query: 117 PVIAVKAARVSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFSTQ-TNTRFEPVSQRTX 175
PV+A+KA +VS+F G K+ NPD PE HKL+ WF +T +S+ T
Sbjct: 396 PVLAIKAGKVSDFSG-KSVGTISSTQLFINPDFPEAHKLRTWFDYGGKDTASFSISRDTM 454
Query: 176 XXXXXXXXXXXXXREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQDCNK 231
+I+++ LG DK D+ +V+ I + + Y ACP + CNK
Sbjct: 455 PGGVSRNEIRKNVSQIKEEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDKQCNK 514
Query: 232 KVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ--- 288
KV + C++CN+E + YR +L V I D T W+T FQ E I+G A+
Sbjct: 515 KVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLTWITAFQETGEEIMGCPAKKLY 574
Query: 289 ----EVGESTEDHPALKKALFTQYIFRLRAKLEHYNGTKKI 325
E+ + E ++ LF QY+ +L+ K E Y +++
Sbjct: 575 AMKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQRV 615
Score = 405 (147.6 bits), Expect = 4.2e-40, Sum P(2) = 4.2e-40
Identities = 91/224 (40%), Positives = 134/224 (59%)
Query: 434 QASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLD-ESGEIR 492
+A A V+ PI +L+PYQ +W IKARVT K IR +NNA+G GK+FS DLLD + GEIR
Sbjct: 192 EAPARVI---PIAALNPYQGRWAIKARVTAKGDIRRYNNAKGDGKVFSFDLLDYDGGEIR 248
Query: 493 ATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEV 552
T FN +RF+D+ E KVY IS +LKPA K F+ + N++E+ F ST+ + DE
Sbjct: 249 VTCFNALVDRFYDVTEVGKVYLISKGSLKPAQKNFNHLKNEWEI-FLESTSTVELCPDED 307
Query: 553 GNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQS 612
G++P ++ F P+ I + +DV+GV + K +T+ +R + L D+S
Sbjct: 308 GSIPKQQFSFRPISDIENAENNTILDVIGVVTSVNPSVPILRKNGMETH-RRILNLKDES 366
Query: 613 QASVTMTLWGKEA--------ETFDASNKPVIAVKAARVSEFQG 648
+V +TLWG+ E D++ PV+A+KA +VS+F G
Sbjct: 367 GKAVEVTLWGEFCNRDGRQLEEMVDSAFHPVLAIKAGKVSDFSG 410
Score = 214 (80.4 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 60/218 (27%), Positives = 103/218 (47%)
Query: 582 VCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLW----GKEAETFDASNKPVIA 637
+ I A ++S +GK+ T + + + + W GK+ +F S + +
Sbjct: 398 LAIKAGKVSDFSGKS-VGTISSTQLFINPDFPEAHKLRTWFDYGGKDTASFSIS-RDTMP 455
Query: 638 VKAARVSEFQGNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACP----SQD 693
+R +E + N+ +I+++ LG DK D+ +V+ I + + Y ACP +
Sbjct: 456 GGVSR-NEIRKNV---SQIKEEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDKQ 511
Query: 694 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQ 753
CNKKV + C++CN+E + YR +L V I D T W+T FQ E I+G A+
Sbjct: 512 CNKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLTWITAFQETGEEIMGCPAK 571
Query: 754 -------EVGESTEDHPALKKALFTQYIFRLRAKLEHY 784
E+ + E ++ LF QY+ +L+ K E Y
Sbjct: 572 KLYAMKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESY 609
Score = 90 (36.7 bits), Expect = 4.2e-40, Sum P(2) = 4.2e-40
Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
I DGV+ AM+A QLND + G + +IVQ+ YI S V R ++++L +
Sbjct: 47 ISDGVSAQH-AMVAVQLNDRVKSGQFEKGSIVQLIDYICSDVKG-----RKLIVVLNMET 100
Query: 385 IKPGTEIGFKIGNP 398
I +E IGNP
Sbjct: 101 IVQQSET---IGNP 111
>WB|WBGene00017546 [details] [associations]
symbol:rpa-1 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0051096 "positive regulation of helicase activity"
evidence=IDA] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005662 "DNA
replication factor A complex" evidence=ISS] InterPro:IPR004365
InterPro:IPR004591 Pfam:PF01336 GO:GO:0009792 GO:GO:0006898
GO:GO:0005654 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0005662
EMBL:FO080212 GO:GO:0051096 InterPro:IPR013955 Pfam:PF08646
PIR:T34219 RefSeq:NP_495606.1 ProteinModelPortal:Q19537 SMR:Q19537
DIP:DIP-26609N IntAct:Q19537 MINT:MINT-1119512 STRING:Q19537
PaxDb:Q19537 EnsemblMetazoa:F18A1.5 GeneID:174238
KEGG:cel:CELE_F18A1.5 CTD:174238 WormBase:F18A1.5 eggNOG:COG1599
GeneTree:ENSGT00390000012403 HOGENOM:HOG000154096 InParanoid:Q19537
KO:K07466 OMA:IKARVSY NextBio:883159 TIGRFAMs:TIGR00617
Uniprot:Q19537
Length = 655
Score = 377 (137.8 bits), Expect = 8.4e-32, P = 8.4e-32
Identities = 106/326 (32%), Positives = 163/326 (50%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANKKF++ +DYE++ S ++I E+ P + V L IA + + IDVL V
Sbjct: 303 ANKKFNNTGHDYEITL-RSDSIIEAG-GELLAAPKLILKRVKLGEIAGYA-GQLIDVLVV 359
Query: 66 C--IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET--FDASNKPVIAV 121
+D E + T K K+ +KR++ L+D+S A V +TLWG EA D + VIA
Sbjct: 360 VEKMDP-EATEFTSKAG-KSLIKREMELIDESGALVRLTLWGDEATKALVDDYVQKVIAF 417
Query: 122 KAARVSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFST-QTNTRFEPVSQRTXXXXXX 180
K EF GG + P+I +L W++ + T + +SQ
Sbjct: 418 KGVIPREFNGGFSLGTGSATRIISVPEIAGVSELYDWYANVKPTTEVKMMSQAAGGSNEA 477
Query: 181 XXXXXXXXREIQDQQLGM-GDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNG 239
+Q+ Q G DK DY +V+ +I +N Y+ C S+ C KK++ +N G
Sbjct: 478 PRTIAG----LQEMQFGKDSDKGDYATVKAMITRVNPTNALYRGCASEGCQKKLVGEN-G 532
Query: 240 MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA 299
YRCEKCNK N F + ++ + D T V+VT F + A I+G +A E+GE ++ P
Sbjct: 533 DYRCEKCNKNMNKFKWLYMMQFELSDETGQVYVTAFGDSAAKIVGKSAAELGELHDESPD 592
Query: 300 LKKALFT--QYI---FRLRAKLEHYN 320
A+F Q++ +RLR K++ YN
Sbjct: 593 EYNAIFERLQFVPKMWRLRCKMDSYN 618
Score = 248 (92.4 bits), Expect = 3.8e-37, Sum P(2) = 3.8e-37
Identities = 59/172 (34%), Positives = 93/172 (54%)
Query: 625 AETFD--ASNKPVIAVKAARVSEFQGNLL--LMREIQDQQLGM-GDKADYCSVRGIIQVF 679
+E +D A+ KP VK + N + +Q+ Q G DK DY +V+ +I
Sbjct: 449 SELYDWYANVKPTTEVKMMSQAAGGSNEAPRTIAGLQEMQFGKDSDKGDYATVKAMITRV 508
Query: 680 RGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTL 739
+N Y+ C S+ C KK++ +N G YRCEKCNK N F + ++ + D T V+VT
Sbjct: 509 NPTNALYRGCASEGCQKKLVGEN-GDYRCEKCNKNMNKFKWLYMMQFELSDETGQVYVTA 567
Query: 740 FQNEAESILGVTAQEVGESTEDHPALKKALFT--QYI---FRLRAKLEHYNK 786
F + A I+G +A E+GE ++ P A+F Q++ +RLR K++ YN+
Sbjct: 568 FGDSAAKIVGKSAAELGELHDESPDEYNAIFERLQFVPKMWRLRCKMDSYNE 619
Score = 235 (87.8 bits), Expect = 3.8e-37, Sum P(2) = 3.8e-37
Identities = 72/214 (33%), Positives = 114/214 (53%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNR 502
PI ++PY + + I V+ K IR + A+ + K+F+ ++ D +G+ IR T FN+
Sbjct: 225 PIAMVTPYVSNFKIHGMVSRKEEIRTFP-AKNT-KVFNFEITDSNGDTIRCTAFNEVAES 282
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
+ I ++ YY+S ++K ANKKF++ +DYE++ S ++I E+ P +
Sbjct: 283 LYTTITENLSYYLSGGSVKQANKKFNNTGHDYEITL-RSDSIIEAG-GELLAAPKLILKR 340
Query: 563 VPLKTIAEISPDENIDVLGVC--IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTL 620
V L IA + + IDVL V +D E + T K K+ +KR++ L+D+S A V +TL
Sbjct: 341 VKLGEIAGYA-GQLIDVLVVVEKMDP-EATEFTSKAG-KSLIKREMELIDESGALVRLTL 397
Query: 621 WGKEAET--FDASNKPVIAVKAARVSEFQGNLLL 652
WG EA D + VIA K EF G L
Sbjct: 398 WGDEATKALVDDYVQKVIAFKGVIPREFNGGFSL 431
>UNIPROTKB|Q19537 [details] [associations]
symbol:rpa-1 "Probable replication factor A 73 kDa subunit"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004365 InterPro:IPR004591 Pfam:PF01336
GO:GO:0009792 GO:GO:0006898 GO:GO:0005654 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0005662 EMBL:FO080212 GO:GO:0051096
InterPro:IPR013955 Pfam:PF08646 PIR:T34219 RefSeq:NP_495606.1
ProteinModelPortal:Q19537 SMR:Q19537 DIP:DIP-26609N IntAct:Q19537
MINT:MINT-1119512 STRING:Q19537 PaxDb:Q19537 EnsemblMetazoa:F18A1.5
GeneID:174238 KEGG:cel:CELE_F18A1.5 CTD:174238 WormBase:F18A1.5
eggNOG:COG1599 GeneTree:ENSGT00390000012403 HOGENOM:HOG000154096
InParanoid:Q19537 KO:K07466 OMA:IKARVSY NextBio:883159
TIGRFAMs:TIGR00617 Uniprot:Q19537
Length = 655
Score = 377 (137.8 bits), Expect = 8.4e-32, P = 8.4e-32
Identities = 106/326 (32%), Positives = 163/326 (50%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANKKF++ +DYE++ S ++I E+ P + V L IA + + IDVL V
Sbjct: 303 ANKKFNNTGHDYEITL-RSDSIIEAG-GELLAAPKLILKRVKLGEIAGYA-GQLIDVLVV 359
Query: 66 C--IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAET--FDASNKPVIAV 121
+D E + T K K+ +KR++ L+D+S A V +TLWG EA D + VIA
Sbjct: 360 VEKMDP-EATEFTSKAG-KSLIKREMELIDESGALVRLTLWGDEATKALVDDYVQKVIAF 417
Query: 122 KAARVSEFQGGKTXXXXXXXXXXXNPDIPECHKLQGWFST-QTNTRFEPVSQRTXXXXXX 180
K EF GG + P+I +L W++ + T + +SQ
Sbjct: 418 KGVIPREFNGGFSLGTGSATRIISVPEIAGVSELYDWYANVKPTTEVKMMSQAAGGSNEA 477
Query: 181 XXXXXXXXREIQDQQLGM-GDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNG 239
+Q+ Q G DK DY +V+ +I +N Y+ C S+ C KK++ +N G
Sbjct: 478 PRTIAG----LQEMQFGKDSDKGDYATVKAMITRVNPTNALYRGCASEGCQKKLVGEN-G 532
Query: 240 MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHPA 299
YRCEKCNK N F + ++ + D T V+VT F + A I+G +A E+GE ++ P
Sbjct: 533 DYRCEKCNKNMNKFKWLYMMQFELSDETGQVYVTAFGDSAAKIVGKSAAELGELHDESPD 592
Query: 300 LKKALFT--QYI---FRLRAKLEHYN 320
A+F Q++ +RLR K++ YN
Sbjct: 593 EYNAIFERLQFVPKMWRLRCKMDSYN 618
Score = 248 (92.4 bits), Expect = 3.8e-37, Sum P(2) = 3.8e-37
Identities = 59/172 (34%), Positives = 93/172 (54%)
Query: 625 AETFD--ASNKPVIAVKAARVSEFQGNLL--LMREIQDQQLGM-GDKADYCSVRGIIQVF 679
+E +D A+ KP VK + N + +Q+ Q G DK DY +V+ +I
Sbjct: 449 SELYDWYANVKPTTEVKMMSQAAGGSNEAPRTIAGLQEMQFGKDSDKGDYATVKAMITRV 508
Query: 680 RGSNTTYKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTL 739
+N Y+ C S+ C KK++ +N G YRCEKCNK N F + ++ + D T V+VT
Sbjct: 509 NPTNALYRGCASEGCQKKLVGEN-GDYRCEKCNKNMNKFKWLYMMQFELSDETGQVYVTA 567
Query: 740 FQNEAESILGVTAQEVGESTEDHPALKKALFT--QYI---FRLRAKLEHYNK 786
F + A I+G +A E+GE ++ P A+F Q++ +RLR K++ YN+
Sbjct: 568 FGDSAAKIVGKSAAELGELHDESPDEYNAIFERLQFVPKMWRLRCKMDSYNE 619
Score = 235 (87.8 bits), Expect = 3.8e-37, Sum P(2) = 3.8e-37
Identities = 72/214 (33%), Positives = 114/214 (53%)
Query: 444 PIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGE-IRATMFNDECNR 502
PI ++PY + + I V+ K IR + A+ + K+F+ ++ D +G+ IR T FN+
Sbjct: 225 PIAMVTPYVSNFKIHGMVSRKEEIRTFP-AKNT-KVFNFEITDSNGDTIRCTAFNEVAES 282
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCF 562
+ I ++ YY+S ++K ANKKF++ +DYE++ S ++I E+ P +
Sbjct: 283 LYTTITENLSYYLSGGSVKQANKKFNNTGHDYEITL-RSDSIIEAG-GELLAAPKLILKR 340
Query: 563 VPLKTIAEISPDENIDVLGVC--IDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTL 620
V L IA + + IDVL V +D E + T K K+ +KR++ L+D+S A V +TL
Sbjct: 341 VKLGEIAGYA-GQLIDVLVVVEKMDP-EATEFTSKAG-KSLIKREMELIDESGALVRLTL 397
Query: 621 WGKEAET--FDASNKPVIAVKAARVSEFQGNLLL 652
WG EA D + VIA K EF G L
Sbjct: 398 WGDEATKALVDDYVQKVIAFKGVIPREFNGGFSL 431
>GENEDB_PFALCIPARUM|PFD0470c [details] [associations]
symbol:PFD0470c "replication factor a protein,
putative" species:5833 "Plasmodium falciparum" [GO:0005662 "DNA
replication factor A complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006261 "DNA-dependent DNA
replication" evidence=ISS] InterPro:IPR004365 Pfam:PF01336
GO:GO:0003676 GO:GO:0006261 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AL844503 GO:GO:0005662 InterPro:IPR013955
Pfam:PF08646 KO:K07466 RefSeq:XP_001351411.1 HSSP:P27694
ProteinModelPortal:Q9U0J0 IntAct:Q9U0J0 MINT:MINT-1572664
PRIDE:Q9U0J0 EnsemblProtists:PFD0470c:mRNA GeneID:812392
KEGG:pfa:PFD0470c EuPathDB:PlasmoDB:PF3D7_0409600
ProtClustDB:CLSZ2500502 Uniprot:Q9U0J0
Length = 1145
Score = 352 (129.0 bits), Expect = 3.9e-34, Sum P(2) = 3.9e-34
Identities = 79/233 (33%), Positives = 130/233 (55%)
Query: 427 NNVAI-PRQASAPVVQTHPIV----SLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFS 481
NN I P Q++A + I+ LS Y +KW IKARV +K IR + + GK+F+
Sbjct: 663 NNRKITPYQSNAVIKMNDGILMQINKLSQYSSKWIIKARVQSKDNIRRYTSGSKEGKVFN 722
Query: 482 IDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHS 541
I+L DE GEI+A F +++ D IE K+Y IS +K ANKKF+++N+DYE++ +
Sbjct: 723 IELCDEDGEIKANFFGKAVDKWFDFIEVGKIYKISKGMIKVANKKFNTLNHDYEITLDEN 782
Query: 542 TTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTY 601
+ +I ++E N+P Y F+ + I ++ +D++ V ++ E + K +
Sbjct: 783 S-LIEILDEENENIPKYNYNFISIDNIKNMNTGSFVDIIAVVLNYQEKMQIFVKKTGQYK 841
Query: 602 MKRDITLVDQSQASVTMTLWGKEAETFDASN---KPVIAVKAARVSEFQGNLL 651
KRD+TL+D+S ++ +TLW K A D N ++ K ++ E+QG L
Sbjct: 842 DKRDVTLIDESFDTIQVTLWEKNATIIDEMNLRDNCIVCFKYLKIGEWQGKKL 894
Score = 257 (95.5 bits), Expect = 4.1e-18, P = 4.1e-18
Identities = 77/304 (25%), Positives = 138/304 (45%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANKKF+++N+DYE++ ++ +I ++E N+P Y F+ + I ++ +D++ V
Sbjct: 764 ANKKFNTLNHDYEITLDENS-LIEILDEENENIPKYNYNFISIDNIKNMNTGSFVDIIAV 822
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN---KPVIAVK 122
++ E + K + KRD+TL+D+S ++ +TLW K A D N ++ K
Sbjct: 823 VLNYQEKMQIFVKKTGQYKDKRDVTLIDESFDTIQVTLWEKNATIIDEMNLRDNCIVCFK 882
Query: 123 AARVSEFQGGKTXXXXXXXXXXXNPD-IPECHKLQGWFSTQTNTRFEPVSQRTXXXXXXX 181
++ E+QG K NPD I + + L+ W+ ++ +
Sbjct: 883 YLKIGEWQG-KKLESHARTKIEINPDNIEKAYILKNWWIHNKKMICNSINLSSNYINIET 941
Query: 182 XXXXXXXREIQD--QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQN-- 237
++ + + + K + G I + Y ACP DCNKK+I +
Sbjct: 942 QKTIQEIKKNVNLVNEEALSGKGIMFTTYGFIDQIYNNMPVYSACP--DCNKKMISNSVD 999
Query: 238 NGMYR-----------CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL-GV 285
+ Y C KCNK N Y + + I D T+S+ + F N A+ I+ G+
Sbjct: 1000 DNEYEPSSNLLEETMYCAKCNKN-NIPVYNYYINLKITDSTDSIRASAFANCAKIIMNGL 1058
Query: 286 TAQE 289
+A+E
Sbjct: 1059 SAEE 1062
Score = 105 (42.0 bits), Expect = 3.9e-34, Sum P(2) = 3.9e-34
Identities = 39/129 (30%), Positives = 60/129 (46%)
Query: 674 GIIQVFRGSNTTYKACPSQDCNKKVI----DQNN----------GMYRCEKCNKEFNTFT 719
G I + Y ACP DCNKK+I D N MY C KCNK N
Sbjct: 971 GFIDQIYNNMPVYSACP--DCNKKMISNSVDDNEYEPSSNLLEETMY-CAKCNKN-NIPV 1026
Query: 720 YRLILPVMIGDWTNSVWVTLFQNEAESIL-GVTAQE---------VGESTEDHPALKKAL 769
Y + + I D T+S+ + F N A+ I+ G++A+E + E+ E+ ++K
Sbjct: 1027 YNYYINLKITDSTDSIRASAFANCAKIIMNGLSAEEYMKLRQEYIMQENIENFDIIEKIK 1086
Query: 770 FTQYIFRLR 778
++ FR++
Sbjct: 1087 LNEFFFRIK 1095
>UNIPROTKB|Q9U0J0 [details] [associations]
symbol:PFD0470c "Replication factor a protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005662 "DNA
replication factor A complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006261 "DNA-dependent DNA
replication" evidence=ISS] InterPro:IPR004365 Pfam:PF01336
GO:GO:0003676 GO:GO:0006261 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AL844503 GO:GO:0005662 InterPro:IPR013955
Pfam:PF08646 KO:K07466 RefSeq:XP_001351411.1 HSSP:P27694
ProteinModelPortal:Q9U0J0 IntAct:Q9U0J0 MINT:MINT-1572664
PRIDE:Q9U0J0 EnsemblProtists:PFD0470c:mRNA GeneID:812392
KEGG:pfa:PFD0470c EuPathDB:PlasmoDB:PF3D7_0409600
ProtClustDB:CLSZ2500502 Uniprot:Q9U0J0
Length = 1145
Score = 352 (129.0 bits), Expect = 3.9e-34, Sum P(2) = 3.9e-34
Identities = 79/233 (33%), Positives = 130/233 (55%)
Query: 427 NNVAI-PRQASAPVVQTHPIV----SLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFS 481
NN I P Q++A + I+ LS Y +KW IKARV +K IR + + GK+F+
Sbjct: 663 NNRKITPYQSNAVIKMNDGILMQINKLSQYSSKWIIKARVQSKDNIRRYTSGSKEGKVFN 722
Query: 482 IDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHS 541
I+L DE GEI+A F +++ D IE K+Y IS +K ANKKF+++N+DYE++ +
Sbjct: 723 IELCDEDGEIKANFFGKAVDKWFDFIEVGKIYKISKGMIKVANKKFNTLNHDYEITLDEN 782
Query: 542 TTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTY 601
+ +I ++E N+P Y F+ + I ++ +D++ V ++ E + K +
Sbjct: 783 S-LIEILDEENENIPKYNYNFISIDNIKNMNTGSFVDIIAVVLNYQEKMQIFVKKTGQYK 841
Query: 602 MKRDITLVDQSQASVTMTLWGKEAETFDASN---KPVIAVKAARVSEFQGNLL 651
KRD+TL+D+S ++ +TLW K A D N ++ K ++ E+QG L
Sbjct: 842 DKRDVTLIDESFDTIQVTLWEKNATIIDEMNLRDNCIVCFKYLKIGEWQGKKL 894
Score = 257 (95.5 bits), Expect = 4.1e-18, P = 4.1e-18
Identities = 77/304 (25%), Positives = 138/304 (45%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANKKF+++N+DYE++ ++ +I ++E N+P Y F+ + I ++ +D++ V
Sbjct: 764 ANKKFNTLNHDYEITLDENS-LIEILDEENENIPKYNYNFISIDNIKNMNTGSFVDIIAV 822
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASN---KPVIAVK 122
++ E + K + KRD+TL+D+S ++ +TLW K A D N ++ K
Sbjct: 823 VLNYQEKMQIFVKKTGQYKDKRDVTLIDESFDTIQVTLWEKNATIIDEMNLRDNCIVCFK 882
Query: 123 AARVSEFQGGKTXXXXXXXXXXXNPD-IPECHKLQGWFSTQTNTRFEPVSQRTXXXXXXX 181
++ E+QG K NPD I + + L+ W+ ++ +
Sbjct: 883 YLKIGEWQG-KKLESHARTKIEINPDNIEKAYILKNWWIHNKKMICNSINLSSNYINIET 941
Query: 182 XXXXXXXREIQD--QQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQN-- 237
++ + + + K + G I + Y ACP DCNKK+I +
Sbjct: 942 QKTIQEIKKNVNLVNEEALSGKGIMFTTYGFIDQIYNNMPVYSACP--DCNKKMISNSVD 999
Query: 238 NGMYR-----------CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESIL-GV 285
+ Y C KCNK N Y + + I D T+S+ + F N A+ I+ G+
Sbjct: 1000 DNEYEPSSNLLEETMYCAKCNKN-NIPVYNYYINLKITDSTDSIRASAFANCAKIIMNGL 1058
Query: 286 TAQE 289
+A+E
Sbjct: 1059 SAEE 1062
Score = 105 (42.0 bits), Expect = 3.9e-34, Sum P(2) = 3.9e-34
Identities = 39/129 (30%), Positives = 60/129 (46%)
Query: 674 GIIQVFRGSNTTYKACPSQDCNKKVI----DQNN----------GMYRCEKCNKEFNTFT 719
G I + Y ACP DCNKK+I D N MY C KCNK N
Sbjct: 971 GFIDQIYNNMPVYSACP--DCNKKMISNSVDDNEYEPSSNLLEETMY-CAKCNKN-NIPV 1026
Query: 720 YRLILPVMIGDWTNSVWVTLFQNEAESIL-GVTAQE---------VGESTEDHPALKKAL 769
Y + + I D T+S+ + F N A+ I+ G++A+E + E+ E+ ++K
Sbjct: 1027 YNYYINLKITDSTDSIRASAFANCAKIIMNGLSAEEYMKLRQEYIMQENIENFDIIEKIK 1086
Query: 770 FTQYIFRLR 778
++ FR++
Sbjct: 1087 LNEFFFRIK 1095
>DICTYBASE|DDB_G0289513 [details] [associations]
symbol:rfa1 "putative replication factor A
DNA-binding subunit" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR004365 Pfam:PF01336
dictyBase:DDB_G0289513 GenomeReviews:CM000154_GR GO:GO:0003676
EMBL:AAFI02000141 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR013955 Pfam:PF08646 eggNOG:COG1599
KO:K07466 RefSeq:XP_636195.1 ProteinModelPortal:Q54HE3 PRIDE:Q54HE3
EnsemblProtists:DDB0233023 GeneID:8627182 KEGG:ddi:DDB_G0289513
InParanoid:Q54HE3 OMA:SINFPKR Uniprot:Q54HE3
Length = 679
Score = 308 (113.5 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 77/244 (31%), Positives = 129/244 (52%)
Query: 418 NTNGSNGVHNNVAIPRQASAPVVQTHPIVSLSPYQN-KWTIKARVTNKTPIREWNN-ARG 475
N N S G NN ++ P+ I S++P N ++TI+A V NK P++ WN A G
Sbjct: 191 NNNNSGGGSNNFYADL-STQPITD---IESIAPGMNVQFTIRAMVRNKQPLKSWNKGANG 246
Query: 476 SGKLFSIDLLDESGEIRATMFNDECN--RF----HDMIEKDKVYYISNCTLKPANKKFSS 529
GKLFS++L+D +GEI+ F+D N F +D E KVY+I +K ANK +++
Sbjct: 247 EGKLFSMELVDSTGEIKCACFSDSSNPNNFINALYDCFENGKVYFIQRFFVKSANKLYNT 306
Query: 530 INNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGVCIDAAEL 589
+++ E+S + V+ + D+ P Y F + I + ++ +DV+G + +
Sbjct: 307 LSHQSELSINSESRVM-ISPDQTQFTPH--YNFKKIADIENLEKNDTVDVIGAITNIDPI 363
Query: 590 SSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNK--PVIAVKAARVSEFQ 647
+++T K K + K IT+ D + AS+ + W ++A K +IA+K +VS+F
Sbjct: 364 ANLTSKQG-KEFTKFGITIADDTNASINVVFWNEKATEVAPQVKVGDIIAMKGVKVSDFS 422
Query: 648 GNLL 651
G L
Sbjct: 423 GRTL 426
Score = 136 (52.9 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 33/128 (25%), Positives = 66/128 (51%)
Query: 6 ANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSVKYCFVPLKTIAEISPDENIDVLGV 65
ANK ++++++ E+S + V+ + D+ P Y F + I + ++ +DV+G
Sbjct: 300 ANKLYNTLSHQSELSINSESRVM-ISPDQTQFTPH--YNFKKIADIENLEKNDTVDVIGA 356
Query: 66 CIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKEAETFDASNK--PVIAVKA 123
+ ++++T K K + K IT+ D + AS+ + W ++A K +IA+K
Sbjct: 357 ITNIDPIANLTSKQG-KEFTKFGITIADDTNASINVVFWNEKATEVAPQVKVGDIIAMKG 415
Query: 124 ARVSEFQG 131
+VS+F G
Sbjct: 416 VKVSDFSG 423
Score = 68 (29.0 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 26/128 (20%), Positives = 54/128 (42%)
Query: 221 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 280
YKAC + C K + + C +C + + YR+ L + GD +++ V + +
Sbjct: 536 YKAC--KKCKKSCPEGS-----CPQCGSDDWEYAYRMSLKLSDGD--DAISVEVMGKTGD 586
Query: 281 SILGVTAQEVGESTED--HPALKKALFTQYIFRLRAKLEHYNGTKKIPDGVNINSFAMLA 338
+ G +A E+ + ++ + L Y+ L A + + + N+ FA L
Sbjct: 587 RLFGKSAAELYQMNQEQINEIFNTVLSNNYVVSL-APSSYMGSNGQTYNRFNVYDFANLY 645
Query: 339 TQLNDIIT 346
N +++
Sbjct: 646 DTPNKLVS 653
Score = 59 (25.8 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 20/94 (21%), Positives = 41/94 (43%)
Query: 686 YKACPSQDCNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
YKAC + C K + + C +C + + YR+ L + GD +++ V + +
Sbjct: 536 YKAC--KKCKKSCPEGS-----CPQCGSDDWEYAYRMSLKLSDGD--DAISVEVMGKTGD 586
Query: 746 SILGVTAQEVGESTED--HPALKKALFTQYIFRL 777
+ G +A E+ + ++ + L Y+ L
Sbjct: 587 RLFGKSAAELYQMNQEQINEIFNTVLSNNYVVSL 620
>UNIPROTKB|I3L2M5 [details] [associations]
symbol:RPA1 "Replication protein A 70 kDa DNA-binding
subunit" species:9606 "Homo sapiens" [GO:0006260 "DNA replication"
evidence=IEA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IEA] [GO:0000800 "lateral
element" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0005662
"DNA replication factor A complex" evidence=IEA] [GO:0007126
"meiosis" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0030097 "hemopoiesis"
evidence=IEA] [GO:0048873 "homeostasis of number of cells within a
tissue" evidence=IEA] [GO:0051276 "chromosome organization"
evidence=IEA] InterPro:IPR007199 Pfam:PF04057 GO:GO:0007126
GO:GO:0008284 GO:GO:0006260 GO:GO:0001701 GO:GO:0003682
GO:GO:0001673 GO:GO:0003697 GO:GO:0048873 GO:GO:0000724
GO:GO:0030097 GO:GO:0000794 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0051276 GO:GO:0005662 EMBL:AC130689
HGNC:HGNC:10289 ChiTaRS:RPA1 Ensembl:ENST00000570451 Bgee:I3L2M5
Uniprot:I3L2M5
Length = 153
Score = 146 (56.5 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 40/113 (35%), Positives = 60/113 (53%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
DG+N S MLATQLN ++ + LS + QI R+IV+ + G R V+I++EL ++K
Sbjct: 35 DGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDG----RRVVILMELEVLK 90
Query: 387 PGTEIGFKIGNPQPLXXXXXXXXXX-----XXPAATNT----NGSNGVHNNVA 430
+G KIGNP P PAA++ NGS+G+ + V+
Sbjct: 91 SAEAVGVKIGNPVPYNEGLGQPQVAPPAPAASPAASSRPQPQNGSSGMGSTVS 143
>UNIPROTKB|I3L524 [details] [associations]
symbol:RPA1 "Replication protein A 70 kDa DNA-binding
subunit" species:9606 "Homo sapiens" [GO:0006260 "DNA replication"
evidence=IEA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IEA] [GO:0000800 "lateral
element" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0005662
"DNA replication factor A complex" evidence=IEA] [GO:0007126
"meiosis" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0030097 "hemopoiesis"
evidence=IEA] [GO:0048873 "homeostasis of number of cells within a
tissue" evidence=IEA] [GO:0051276 "chromosome organization"
evidence=IEA] InterPro:IPR007199 Pfam:PF04057 GO:GO:0007126
GO:GO:0008284 GO:GO:0006260 GO:GO:0001701 GO:GO:0003682
GO:GO:0001673 GO:GO:0003697 GO:GO:0048873 GO:GO:0000724
GO:GO:0030097 GO:GO:0000794 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0051276 GO:GO:0005662 EMBL:AC130689
HGNC:HGNC:10289 ChiTaRS:RPA1 Ensembl:ENST00000571058 Bgee:I3L524
Uniprot:I3L524
Length = 124
Score = 145 (56.1 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 32/74 (43%), Positives = 46/74 (62%)
Query: 327 DGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNIIK 386
DG+N S MLATQLN ++ + LS + QI R+IV+ + G R V+I++EL ++K
Sbjct: 35 DGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDG----RRVVILMELEVLK 90
Query: 387 PGTEIGFKIGNPQP 400
+G KIGNP P
Sbjct: 91 SAEAVGVKIGNPVP 104
>TAIR|locus:2011521 [details] [associations]
symbol:AT1G52950 "AT1G52950" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009506 "plasmodesma" evidence=IDA] EMBL:CP002684
GO:GO:0009506 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AC019018 InterPro:IPR013955 Pfam:PF08646 KO:K07466
InterPro:IPR003871 Pfam:PF02721 IPI:IPI00548251 RefSeq:NP_175703.1
UniGene:At.52167 ProteinModelPortal:Q9C926 SMR:Q9C926
EnsemblPlants:AT1G52950.1 GeneID:841728 KEGG:ath:AT1G52950
TAIR:At1g52950 HOGENOM:HOG000152224 InParanoid:Q9C926 OMA:DGNKIQA
PhylomeDB:Q9C926 ArrayExpress:Q9C926 Genevestigator:Q9C926
Uniprot:Q9C926
Length = 566
Score = 113 (44.8 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 44/195 (22%), Positives = 87/195 (44%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNN-ARGSGKLFSIDLLDESG-EIRATMFNDECNR 502
I +L P++ W I+ ++ + WN+ +GSG + + L DE G +I+A + + +
Sbjct: 10 IKNLKPFKTSWCIQVKI-----LHAWNHYTKGSGMSYEMMLADEDGNKIQAGIKKEHLLK 64
Query: 503 FHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVI--PCNEDEVGNMPSVKY 560
++ I ++ A+ + S + Y ++ ST P DE+ + V +
Sbjct: 65 LQRYVKIGHWTIIEEFSVTKASGLYRSTTHPYRINIQSSTRFSNSPTISDEIW-LDLVNF 123
Query: 561 CFVPLKTIAEISPDENIDVLGVCIDAAELS--SVTGKTNQKTYMKRDITLVDQSQASVTM 618
V T+ + ++ ++V+G ++ E+ V GK +K D L D +
Sbjct: 124 NDVLSGTLDQ---NKLVNVIGQLVNVGEIQLLDVQGKPTKKI----DFQLRDTDDNRLPC 176
Query: 619 TLWGKEAETFDASNK 633
+LWGK A+ +K
Sbjct: 177 SLWGKFADQIHKVSK 191
Score = 78 (32.5 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 694 CNKKVIDQ----NNG----MYRCEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAE 745
CNKKV ++G +YRC+KC + + R L + I D T + LF + E
Sbjct: 310 CNKKVFKSKKTLSSGAKKIIYRCDKCATDVTSIEARYWLHLDIMDNTGESKLMLFDSFVE 369
Query: 746 SILGVTAQEVGESTED 761
I+G A E+ + T +
Sbjct: 370 PIIGCPATELLDVTNE 385
>WB|WBGene00019858 [details] [associations]
symbol:R03H10.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] InterPro:IPR004365
Pfam:PF01336 GO:GO:0003690 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 eggNOG:COG1599 GeneTree:ENSGT00390000002895
EMBL:FO081265 PIR:T16673 RefSeq:NP_494733.2
ProteinModelPortal:Q9GYL9 SMR:Q9GYL9 EnsemblMetazoa:R03H10.6
GeneID:187558 KEGG:cel:CELE_R03H10.6 UCSC:R03H10.6 CTD:187558
WormBase:R03H10.6 HOGENOM:HOG000152608 NextBio:935694
Uniprot:Q9GYL9
Length = 324
Score = 135 (52.6 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 53/226 (23%), Positives = 97/226 (42%)
Query: 430 AIPRQASAPVVQTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESG 489
A + AP PI +L+ + + I RVT ++ R K+FS ++ D +G
Sbjct: 108 ATDQNVDAPPAAVTPIANLNDSVDNFKIHGRVTLM------DDKRRPEKVFSFEITDVNG 161
Query: 490 -EIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCN 548
IR F + R + I KD+ YY++ +K + ++ + +E+ T+ P
Sbjct: 162 YTIRCVAFGELGVRLYGSIAKDQSYYLTGGKVKNGHTLYNQTGHAFEIILDEFPTIEPA- 220
Query: 549 EDEVGNMPSVKYCFVPLKTIA-EISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDIT 607
V +P + V L + E + IDV+ + + K + R++
Sbjct: 221 -PAVLTVPKLNLNRVMLCNVQNEQYYRKPIDVIVAVEEINDFLDDYHPIENKPPVLRNMV 279
Query: 608 LVDQSQASVTMTLWGKEAETF---DASNKPVIAVKAARVSEFQGNL 650
++D S + +TLWG A + NK ++A K ++F+G L
Sbjct: 280 VIDDSNFRIRLTLWGYRAMDSGVEEFQNK-IVAFKGIVPTQFEGEL 324
Score = 37 (18.1 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 14 NNDYEMSFTHSTTVIPCNEDEV 35
++DY TH+ +I NE V
Sbjct: 79 SDDYPSYTTHACEIIIFNEHNV 100
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.131 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 786 749 0.00089 121 3 11 22 0.42 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 31
No. of states in DFA: 620 (66 KB)
Total size of DFA: 388 KB (2185 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:02
No. of threads or processors used: 24
Search cpu time: 62.31u 0.08s 62.39t Elapsed: 00:00:24
Total cpu time: 62.33u 0.08s 62.41t Elapsed: 00:00:26
Start: Thu Aug 15 12:26:31 2013 End: Thu Aug 15 12:26:57 2013