RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15132
(786 letters)
>d1l1oc_ b.40.4.3 (C:) Replication protein A 70 KDa subunit (RPA70)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 153 bits (389), Expect = 1e-43
Identities = 68/148 (45%), Positives = 89/148 (60%), Gaps = 5/148 (3%)
Query: 183 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 242
N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 2 TNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 61
Query: 243 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP---- 298
CEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG A +GE + +
Sbjct: 62 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFE 121
Query: 299 -ALKKALFTQYIFRLRAKLEHYNGTKKI 325
+ A F +IFR+R K+E YN +I
Sbjct: 122 EVFQNANFRSFIFRVRVKVETYNDESRI 149
Score = 150 bits (381), Expect = 1e-42
Identities = 67/143 (46%), Positives = 87/143 (60%), Gaps = 5/143 (3%)
Query: 648 GNLLLMREIQDQQLGMGDKADYCSVRGIIQVFRGSNTTYKACPSQDCNKKVIDQNNGMYR 707
N + E++ + LG GDK DY S + R N Y+ACP+QDCNKKVIDQ NG+YR
Sbjct: 2 TNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 61
Query: 708 CEKCNKEFNTFTYRLILPVMIGDWTNSVWVTLFQNEAESILGVTAQEVGESTEDHP---- 763
CEKC+ EF F YR+IL V I D+ + WVT FQ AE+ILG A +GE + +
Sbjct: 62 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFE 121
Query: 764 -ALKKALFTQYIFRLRAKLEHYN 785
+ A F +IFR+R K+E YN
Sbjct: 122 EVFQNANFRSFIFRVRVKVETYN 144
>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit
(RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 149 bits (379), Expect = 3e-43
Identities = 68/118 (57%), Positives = 95/118 (80%), Gaps = 2/118 (1%)
Query: 441 QTHPIVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDEC 500
+ PI SL+PYQ+KWTI ARVTNK+ IR W+N+RG GKLFS++L+DESGEIRAT FN++
Sbjct: 1 KVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQV 60
Query: 501 NRFHDMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV 558
++F +IE +KVYY S TLK ANK+F+++ NDYEM+F + T+V+PC +D ++P+V
Sbjct: 61 DKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTV 116
Score = 42.9 bits (101), Expect = 1e-05
Identities = 17/37 (45%), Positives = 29/37 (78%), Gaps = 2/37 (5%)
Query: 5 PANKKFSSINNDYEMSFTHSTTVIPCNEDEVGNMPSV 41
ANK+F+++ NDYEM+F + T+V+PC +D ++P+V
Sbjct: 82 IANKQFTAVKNDYEMTFNNETSVMPCEDDH--HLPTV 116
>d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit
(RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 129 bits (327), Expect = 5e-36
Identities = 49/121 (40%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
Query: 42 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM 101
++ F + + S D +D++G+C + + +T ++N + KR+I L+D S VT
Sbjct: 1 QFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTA 60
Query: 102 TLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPECHKLQGWFST 161
TLWG++A+ FD S +PV+A+K ARVS+F G++LS+ SS + NPDIPE +KL+GWF
Sbjct: 61 TLWGEDADKFDGSRQPVLAIKGARVSDFG-GRSLSVLSSSTIIANPDIPEAYKLRGWFDA 119
Query: 162 Q 162
+
Sbjct: 120 E 120
Score = 98.8 bits (246), Expect = 4e-25
Identities = 33/89 (37%), Positives = 56/89 (62%)
Query: 559 KYCFVPLKTIAEISPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTM 618
++ F + + S D +D++G+C + + +T ++N + KR+I L+D S VT
Sbjct: 1 QFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTA 60
Query: 619 TLWGKEAETFDASNKPVIAVKAARVSEFQ 647
TLWG++A+ FD S +PV+A+K ARVS+F
Sbjct: 61 TLWGEDADKFDGSRQPVLAIKGARVSDFG 89
>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon
Sulfolobus solfataricus [TaxId: 2287]}
Length = 115
Score = 89.6 bits (222), Expect = 5e-22
Identities = 17/108 (15%), Positives = 39/108 (36%), Gaps = 11/108 (10%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGSGKLFSIDLLDESGEIRATMFNDECNRFH 504
+ +L P + RV + R+ G + + DE+G ++ T++
Sbjct: 5 VGNLKPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHA---- 60
Query: 505 DMIEKDKVYYISNCTLKPANKKFSSINNDYEMSFTHSTTVIPCNEDEV 552
I++ +V I N ++ +++ T + +ED
Sbjct: 61 GSIKEGQVVKIENA-------WTTAFKGQVQLNAGSKTKIAEASEDGF 101
Score = 38.7 bits (90), Expect = 3e-04
Identities = 20/101 (19%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 49 KTIAEISP-DENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASVTMTLWGKE 107
+ + + P E+++V ++A+E + K +T + + D++ V +TLWGK
Sbjct: 3 EKVGNLKPNMESVNVTVRVLEASEARQIQTKNGVRTI--SEAIVGDET-GRVKLTLWGKH 59
Query: 108 AETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPD 148
A + V+ ++ A + F+G L+ + ++ +
Sbjct: 60 AGSIKEGQ--VVKIENAWTTAFKGQVQLNAGSKTKIAEASE 98
>d2b3ga1 b.40.4.3 (A:3-114) Replication protein A 70 KDa subunit
(RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Length = 112
Score = 80.5 bits (199), Expect = 7e-19
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 325 IPDGVNINSFAMLATQLNDIITDGTLSEFTIVQIKRYIVSGVSSGSATNRSVLIILELNI 384
+ DG+N S MLATQLN ++ + LS + QI R+IV+ + G R V+I++EL +
Sbjct: 44 MSDGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDG----RRVVILMELEV 99
Query: 385 IKPGTEIGFKIGN 397
+K +G KIGN
Sbjct: 100 LKSAEAVGVKIGN 112
>d1wjja_ b.40.4.3 (A:) Hypothetical protein At4g28440 (F20O9.120)
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 145
Score = 36.1 bits (83), Expect = 0.005
Identities = 19/127 (14%), Positives = 39/127 (30%), Gaps = 18/127 (14%)
Query: 445 IVSLSPYQNKWTIKARVTNKTPIREWNNARGS----------GKLFSIDLLDESGEIRAT 494
+ L P T+ +V + ++ + DE+G I T
Sbjct: 19 VEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFT 78
Query: 495 MFNDECNRFHDMIEKDKVYYISNCTLKPANKKFS-SINNDYEMSFTHSTTVIPCNEDEVG 553
ND+ D+++ + N + ++ + T + ED
Sbjct: 79 ARNDQV----DLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGA-ASFTVKEDN-- 131
Query: 554 NMPSVKY 560
N+ V+Y
Sbjct: 132 NLSLVEY 138
Score = 35.7 bits (82), Expect = 0.006
Identities = 11/112 (9%), Positives = 36/112 (32%), Gaps = 14/112 (12%)
Query: 50 TIAEISP-DENIDVLGVCIDA---------AELSSVTGKTNQKTYMKRDITLVDQSQASV 99
+ ++ P + I+A +S + +Q + + + + D++ +
Sbjct: 18 KVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRI-VECLIGDET-GCI 75
Query: 100 TMTLWGKEAETFDASNKPVIAVKAARVSEFQGGKTLSLSMSSVLSLNPDIPE 151
T + + + ++ +R+ F+G L + +
Sbjct: 76 LFTARNDQVDLMKPGA--TVILRNSRIDMFKGTMRLGVDKWGRIEATGAASF 125
Score = 32.2 bits (73), Expect = 0.10
Identities = 11/96 (11%), Positives = 35/96 (36%), Gaps = 14/96 (14%)
Query: 567 TIAEISP-DENIDVLGVCIDA---------AELSSVTGKTNQKTYMKRDITLVDQSQASV 616
+ ++ P + I+A +S + +Q + + + + D++ +
Sbjct: 18 KVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRI-VECLIGDET-GCI 75
Query: 617 TMTLWGKEAETFDASNKPVIAVKAARVSEFQGNLLL 652
T + + + ++ +R+ F+G + L
Sbjct: 76 LFTARNDQVDLMKPGA--TVILRNSRIDMFKGTMRL 109
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 30.2 bits (67), Expect = 0.23
Identities = 6/43 (13%), Positives = 18/43 (41%)
Query: 229 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW 271
C + + N + C++C+ ++ ++ + + VW
Sbjct: 22 CRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVW 64
Score = 30.2 bits (67), Expect = 0.23
Identities = 6/43 (13%), Positives = 18/43 (41%)
Query: 694 CNKKVIDQNNGMYRCEKCNKEFNTFTYRLILPVMIGDWTNSVW 736
C + + N + C++C+ ++ ++ + + VW
Sbjct: 22 CRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVW 64
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia
coli [TaxId: 562]}
Length = 71
Score = 28.3 bits (63), Expect = 0.56
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 224 CPSQDCNKKVIDQNNGMYRCEKCNKEFN 251
CP C + V+DQ+NG RC C +
Sbjct: 5 CP--QC-QHVLDQDNGHARCRSCGEFIE 29
Score = 28.3 bits (63), Expect = 0.56
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 689 CPSQDCNKKVIDQNNGMYRCEKCNKEFN 716
CP C + V+DQ+NG RC C +
Sbjct: 5 CP--QC-QHVLDQDNGHARCRSCGEFIE 29
>d1tm9a_ a.225.1.1 (A:) Hypothetical protein MG354 {Mycoplasma
genitalium [TaxId: 2097]}
Length = 137
Score = 28.9 bits (64), Expect = 1.1
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 30 CNEDEVGNMPSVKYCFVPLKTIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQ 81
C+ E SV P+K I EI+ DEN I++ + ++ + S G T Q
Sbjct: 29 CSTRESDTFSSVDVPLEPIKNIIEITKDENQQIEITKIAVNNIKTLSSVGATGQ 82
Score = 28.9 bits (64), Expect = 1.1
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 547 CNEDEVGNMPSVKYCFVPLKTIAEISPDEN--IDVLGVCIDAAELSSVTGKTNQ 598
C+ E SV P+K I EI+ DEN I++ + ++ + S G T Q
Sbjct: 29 CSTRESDTFSSVDVPLEPIKNIIEITKDENQQIEITKIAVNNIKTLSSVGATGQ 82
>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 73
Score = 26.9 bits (60), Expect = 1.8
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 224 CPSQDCNK-KVIDQNNGMYRCEKCNKEF 250
CP+ C + +V Q G+++C C+ +F
Sbjct: 30 CPN--CGEDRVDRQGTGIWQCSYCDYKF 55
Score = 26.9 bits (60), Expect = 1.8
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 689 CPSQDCNK-KVIDQNNGMYRCEKCNKEF 715
CP+ C + +V Q G+++C C+ +F
Sbjct: 30 CPN--CGEDRVDRQGTGIWQCSYCDYKF 55
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 25.9 bits (57), Expect = 3.3
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 229 CNKKVIDQNNGMYRCEKCNKEF 250
C ++ DQ +Y C C F
Sbjct: 21 CQGELKDQ--HVYVCAVCQNVF 40
Score = 25.9 bits (57), Expect = 3.3
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 694 CNKKVIDQNNGMYRCEKCNKEF 715
C ++ DQ +Y C C F
Sbjct: 21 CQGELKDQ--HVYVCAVCQNVF 40
>d1pg5b2 g.41.7.1 (B:105-160) Aspartate carbamoyltransferase,
Regulatory-chain, C-terminal domain {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 56
Score = 25.8 bits (57), Expect = 3.4
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 232 KVIDQNNGMYRCEKCNKEFN 251
K + + RCE C +
Sbjct: 27 KTLTEKPLKMRCEYCETIID 46
Score = 25.8 bits (57), Expect = 3.4
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 697 KVIDQNNGMYRCEKCNKEFN 716
K + + RCE C +
Sbjct: 27 KTLTEKPLKMRCEYCETIID 46
>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula
marismortui [TaxId: 2238]}
Length = 73
Score = 26.2 bits (58), Expect = 3.6
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 224 CPSQDCNK-KVIDQNNGMYRCEKCNKEF 250
CP C K+ G++ C C +
Sbjct: 30 CPV--CGFKKLKRAGTGIWMCGHCGYKI 55
Score = 26.2 bits (58), Expect = 3.6
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 689 CPSQDCNK-KVIDQNNGMYRCEKCNKEF 715
CP C K+ G++ C C +
Sbjct: 30 CPV--CGFKKLKRAGTGIWMCGHCGYKI 55
>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus
helveticus [TaxId: 1587]}
Length = 167
Score = 27.3 bits (60), Expect = 5.5
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 8/89 (8%)
Query: 572 SPDENIDVLGVCIDAAELSSVTGKTNQKTYMKRDITLVDQSQASV-----TMTLWGK--E 624
P ++ E+ + + + D+T + + V G E
Sbjct: 43 FPFDD-GFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGVFLYDMDQLDDGSAFE 101
Query: 625 AETFDASNKPVIAVKAARVSEFQGNLLLM 653
A +KPVI V E + + LM
Sbjct: 102 IGFMRAMHKPVILVPFTEHPEKEKKMNLM 130
>d1g8fa1 b.122.1.3 (A:2-168) ATP sulfurylase N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 167
Score = 26.8 bits (59), Expect = 6.7
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 482 IDLLDESGEIRATMFNDECNRFHDMIEKDKVYYISNCTLKPANKKFSSINNDY 534
I L + A + + + + IE ++V+ PA ++ DY
Sbjct: 101 IALFQDDEIPIAILTVQDVYKPNKTIEAERVFRGDP--EHPAISYLFNVAGDY 151
>d2fzcb2 g.41.7.1 (B:101-153) Aspartate carbamoyltransferase,
Regulatory-chain, C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 53
Score = 24.7 bits (54), Expect = 8.4
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 231 KKVIDQNNGMYRCEKCNKEFN 251
N+ +C+ C KEF+
Sbjct: 26 AVRKRANDIALKCKYCEKEFS 46
Score = 24.7 bits (54), Expect = 8.4
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 696 KKVIDQNNGMYRCEKCNKEFN 716
N+ +C+ C KEF+
Sbjct: 26 AVRKRANDIALKCKYCEKEFS 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.383
Gapped
Lambda K H
0.267 0.0628 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,807,425
Number of extensions: 129961
Number of successful extensions: 422
Number of sequences better than 10.0: 1
Number of HSP's gapped: 417
Number of HSP's successfully gapped: 33
Length of query: 786
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 693
Effective length of database: 1,130,706
Effective search space: 783579258
Effective search space used: 783579258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.0 bits)