BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15133
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PPL|A Chain A, Human Pancreatic Lipase-Related Protein 1
Length = 485
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 110/229 (48%), Gaps = 37/229 (16%)
Query: 8 FHKGDYNVIVVDY--GSLVVVPCIDQISWSPSFAGACIAQ-LAYYLSQHPRGVPPEKLHL 64
F + N I VD+ GS Q + + GA +AQ L L+++ PP K+HL
Sbjct: 121 FEVEEVNCICVDWKKGSQATYT---QAANNVRVVGAQVAQMLDILLTEY--SYPPSKVHL 175
Query: 65 LGWSIGAHIAGLTANYVEKGRK---LGRITGLDPTIIFYQTNNKTKDLDSTDALFVDVIH 121
+G S+GAH+AG E G K L RITGLDP +++ + LD +DA FVDVIH
Sbjct: 176 IGHSLGAHVAG------EAGSKTPGLSRITGLDPVEASFESTPEEVRLDPSDADFVDVIH 229
Query: 122 TAAGVL------GQWGPSGHADYYVNGGTSQPGC--GSFSIIEQL-----------SCDH 162
T A L G GH D++ NGG S PGC + S I L +C+H
Sbjct: 230 TDAAPLIPFLGFGTNQQMGHLDFFPNGGESMPGCKKNALSQIVDLDGIWAGTRDFVACNH 289
Query: 163 TKVTPYFIESINTKRGFWAAPCPNRFYYNLGWC-DSPETQYVEMGERAN 210
+ Y++ESI GF A PC + + C P+ +MG A+
Sbjct: 290 LRSYKYYLESILNPDGFAAYPCTSYKSFESDKCFPCPDQGCPQMGHYAD 338
>pdb|1BU8|A Chain A, Rat Pancreatic Lipase Related Protein 2
Length = 452
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 95/204 (46%), Gaps = 31/204 (15%)
Query: 31 QISWSPSFAGACIAQLAYYLSQHPRGVPPEKLHLLGWSIGAHIAGLTANYVEKGRKL--- 87
Q S++ GA IA L LS G PE +HL+G S+GAH+ G E GR+L
Sbjct: 118 QASYNTRVVGAEIAFLVQVLSTE-MGYSPENVHLIGHSLGAHVVG------EAGRRLEGH 170
Query: 88 -GRITGLDPTIIFYQTNNKTKDLDSTDALFVDVIHTAAGVL------GQWGPSGHADYYV 140
GRITGLDP +Q + LD +DA+FVDVIHT + + G GH D++
Sbjct: 171 VGRITGLDPAEPCFQGLPEEVRLDPSDAMFVDVIHTDSAPIIPYLGFGMSQKVGHLDFFP 230
Query: 141 NGGTSQPGCGS--FSIIEQL-----------SCDHTKVTPYFIESINTKRGFWAAPCPNR 187
NGG PGC S I + +C+H + Y+ SI GF PC +
Sbjct: 231 NGGKEMPGCQKNILSTIVDINGIWEGTQNFVACNHLRSYKYYASSILNPDGFLGYPCSSY 290
Query: 188 FYYNLGWC-DSPETQYVEMGERAN 210
+ C PE +MG A+
Sbjct: 291 EKFQQNDCFPCPEEGCPKMGHYAD 314
>pdb|1W52|X Chain X, Crystal Structure Of A Proteolyzed Form Of Pancreatic
Lipase Related Protein 2 From Horse
Length = 452
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 82/162 (50%), Gaps = 23/162 (14%)
Query: 44 AQLAYYLSQHPRGVP--PEKLHLLGWSIGAHIAGLTANYVEKGRKLGRITGLDPTIIFYQ 101
A+ AY + Q + PE +H++G S+GAH AG +E ++GR+TGLDP +Q
Sbjct: 128 AETAYLIQQLLTELSYNPENVHIIGHSLGAHTAGEAGRRLEG--RVGRVTGLDPAEPCFQ 185
Query: 102 TNNKTKDLDSTDALFVDVIHTAAGVL------GQWGPSGHADYYVNGGTSQPGC--GSFS 153
++ LD +DA FVDVIHT A + G GH D++ NGG PGC SFS
Sbjct: 186 DASEEVRLDPSDAQFVDVIHTDASPMLPSLGFGMSQKVGHMDFFPNGGKQMPGCKRSSFS 245
Query: 154 II-----------EQLSCDHTKVTPYFIESINTKRGFWAAPC 184
+ L+C+H K Y+ SI GF A PC
Sbjct: 246 TFIDINGIWQGAQDYLACNHLKSFEYYSSSILNPDGFLAYPC 287
>pdb|1GPL|A Chain A, Rp2 Lipase
Length = 432
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 81/164 (49%), Gaps = 22/164 (13%)
Query: 31 QISWSPSFAGACIAQLAYYLSQHPRGVPPEKLHLLGWSIGAHIAGLTANYVEKGRKL--- 87
Q S + GA +A L LS PE +H++G S+GAH AG E G++L
Sbjct: 118 QASQNIRVVGAEVAYLVQVLST-SLNYAPENVHIIGHSLGAHTAG------EAGKRLNGL 170
Query: 88 -GRITGLDPTIIFYQTNNKTKDLDSTDALFVDVIHTAAGVL------GQWGPSGHADYYV 140
GRITGLDP ++Q + LD +DA FVDVIHT + G GH D++
Sbjct: 171 VGRITGLDPAEPYFQDTPEEVRLDPSDAKFVDVIHTDISPILPSLGFGMSQKVGHMDFFP 230
Query: 141 NGGTSQPGCGSFSIIEQLSCDHTKVTPYFIESINTKRGFWAAPC 184
NGG PGC + +SC+H + Y+ SI GF PC
Sbjct: 231 NGGKDMPGCKT-----GISCNHHRSIEYYHSSILNPEGFLGYPC 269
>pdb|1RP1|A Chain A, Dog Pancreatic Lipase Related Protein 1
Length = 450
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 93/194 (47%), Gaps = 30/194 (15%)
Query: 40 GACIAQLAYYLSQHPRGVPPEKLHLLGWSIGAHIAGLTANYVEKGRK---LGRITGLDPT 96
GA +AQ+ LS + P ++ L+G S+GAH+AG E G + LGRITGLDP
Sbjct: 127 GAQVAQMLSMLSAN-YSYSPSQVQLIGHSLGAHVAG------EAGSRTPGLGRITGLDPV 179
Query: 97 IIFYQTNNKTKDLDSTDALFVDVIHTAAGVL------GQWGPSGHADYYVNGGTSQPGC- 149
+Q + LD TDA FVDVIHT A L G GH D++ NGG PGC
Sbjct: 180 EASFQGTPEEVRLDPTDADFVDVIHTDAAPLIPFLGFGTSQQMGHLDFFPNGGEEMPGCK 239
Query: 150 -GSFSIIEQL-----------SCDHTKVTPYFIESINTKRGFWAAPCPNRFYYNLGWC-D 196
+ S I L +C+H + Y+ ESI GF + PC + + C
Sbjct: 240 KNALSQIVDLDGIWEGTRDFVACNHLRSYKYYSESILNPDGFASYPCASYRAFESNKCFP 299
Query: 197 SPETQYVEMGERAN 210
P+ +MG A+
Sbjct: 300 CPDQGCPQMGHYAD 313
>pdb|1LPA|B Chain B, Interfacial Activation Of The Lipase-Procolipase Complex
By Mixed Micelles Revealed By X-Ray Crystallography
pdb|1LPB|B Chain B, The 2.46 Angstroms Resolution Structure Of The Pancreatic
Lipase Colipase Complex Inhibited By A C11 Alkyl
Phosphonate
pdb|1N8S|A Chain A, Structure Of The Pancreatic Lipase-Colipase Complex
Length = 449
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 87/189 (46%), Gaps = 32/189 (16%)
Query: 31 QISWSPSFAGACIAQLAYYLSQHPRGVPPEKLHLLGWSIGAHIAGLTANYVEKGRK---- 86
Q S + GA +A +L Q G P +H++G S+GAH AG E GR+
Sbjct: 117 QASQNIRIVGAEVAYFVEFL-QSAFGYSPSNVHVIGHSLGAHAAG------EAGRRTNGT 169
Query: 87 LGRITGLDPTIIFYQTNNKTKDLDSTDALFVDVIHTAAGVL------GQWGPSGHADYYV 140
+GRITGLDP +Q + LD +DA FVDVIHT + G GH D++
Sbjct: 170 IGRITGLDPAEPCFQGTPELVRLDPSDAKFVDVIHTDGAPIVPNLGFGMSQVVGHLDFFP 229
Query: 141 NGGTSQPGCGSFSIIEQL--------------SCDHTKVTPYFIESINTKRGFWAAPCPN 186
NGG PGC +I+ Q+ +C+H + Y+ +SI GF PC +
Sbjct: 230 NGGVEMPGCKK-NILSQIVDIDGIWEGTRDFAACNHLRSYKYYTDSIVNPDGFAGFPCAS 288
Query: 187 RFYYNLGWC 195
+ C
Sbjct: 289 YNVFTANKC 297
>pdb|1ETH|A Chain A, Triacylglycerol LipaseCOLIPASE COMPLEX
pdb|1ETH|C Chain C, Triacylglycerol LipaseCOLIPASE COMPLEX
Length = 448
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 85/178 (47%), Gaps = 33/178 (18%)
Query: 44 AQLAYYLS--QHPRGVPPEKLHLLGWSIGAHIAGLTANYVEKGRK----LGRITGLDPTI 97
A++AY++ + G P +H++G S+G+H AG E GR+ + RITGLDP
Sbjct: 127 AEVAYFVEVLKSSLGYSPSNVHVIGHSLGSHAAG------EAGRRTNGTIERITGLDPAE 180
Query: 98 IFYQTNNKTKDLDSTDALFVDVIHTAAGVL------GQWGPSGHADYYVNGGTSQPGCGS 151
+Q + LD +DA FVDVIHT A + G GH D++ NGG PGC
Sbjct: 181 PCFQGTPELVRLDPSDAKFVDVIHTDAAPIIPNLGFGMSQTVGHLDFFPNGGKQMPGCQK 240
Query: 152 FSIIEQL--------------SCDHTKVTPYFIESINTKRGFWAAPCPNRFYYNLGWC 195
+I+ Q+ +C+H + Y+ +SI GF PC + + C
Sbjct: 241 -NILSQIVDIDGIWEGTRDFVACNHLRSYKYYADSILNPDGFAGFPCDSYNVFTANKC 297
>pdb|1HPL|A Chain A, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
pdb|1HPL|B Chain B, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
Length = 449
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 89/201 (44%), Gaps = 33/201 (16%)
Query: 8 FHKGDYNVIVVDYGSLVVVPCIDQISWSPSFAGACIAQLAYYLSQHPRGVPPEKLHLLGW 67
F N I VD+ S Q S + GA +A L L Q P +H++G
Sbjct: 95 FKVESVNCICVDWKSGSRTA-YSQASQNVRIVGAEVAYLVGVL-QSSFDYSPSNVHIIGH 152
Query: 68 SIGAHIAGLTANYVEKGRK----LGRITGLDPTIIFYQTNNKTKDLDSTDALFVDVIHTA 123
S+G+H AG E GR+ +GRITGLDP +Q + LD +DA FVDVIHT
Sbjct: 153 SLGSHAAG------EAGRRTNGAVGRITGLDPAEPCFQGTPELVRLDPSDAQFVDVIHTD 206
Query: 124 AGV------LGQWGPSGHADYYVNGGTSQPGCGSFSIIEQL--------------SCDHT 163
G +GH D++ NGG PGC +++ Q+ +C+H
Sbjct: 207 IAPFIPNLGFGMSQTAGHLDFFPNGGKEMPGCQK-NVLSQIVDIDGIWQGTRDFAACNHL 265
Query: 164 KVTPYFIESINTKRGFWAAPC 184
+ Y+ +SI GF C
Sbjct: 266 RSYKYYTDSILNPDGFAGFSC 286
>pdb|2OXE|A Chain A, Structure Of The Human Pancreatic Lipase-Related Protein 2
pdb|2OXE|B Chain B, Structure Of The Human Pancreatic Lipase-Related Protein 2
Length = 466
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 73/165 (44%), Gaps = 22/165 (13%)
Query: 39 AGACIAQLAYYLSQHPRGVPPEKLHLLGWSIGAHIAGLTANYVEKGRKLGRITGLDPTII 98
GA A L LS G E +H++G S+GAH A + RITGLDP
Sbjct: 128 VGAETAFLIQALSTQ-LGYSLEDVHVIGHSLGAHTAAEAGRRLGGRVG--RITGLDPAGP 184
Query: 99 FYQTNNKTKDLDSTDALFVDVIHTAAGVL------GQWGPSGHADYYVNGGTSQPGCGS- 151
+Q + LD +DA+FVDVIHT + + G GH D++ NGG PGC
Sbjct: 185 CFQDEPEEVRLDPSDAVFVDVIHTDSSPIVPSLGFGMSQKVGHLDFFPNGGKEMPGCKKN 244
Query: 152 -FSIIEQL-----------SCDHTKVTPYFIESINTKRGFWAAPC 184
S I + SC+H + Y+ S+ GF PC
Sbjct: 245 VLSTITDIDGIWEGIGGFVSCNHLRSFEYYSSSVLNPDGFLGYPC 289
>pdb|2PVS|A Chain A, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
pdb|2PVS|B Chain B, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
Length = 452
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 73/165 (44%), Gaps = 22/165 (13%)
Query: 39 AGACIAQLAYYLSQHPRGVPPEKLHLLGWSIGAHIAGLTANYVEKGRKLGRITGLDPTII 98
GA A L LS G E +H++G S+GAH A + RITGLDP
Sbjct: 126 VGAETAFLIQALSTQ-LGYSLEDVHVIGHSLGAHTAAEAGRRLGGRVG--RITGLDPAGP 182
Query: 99 FYQTNNKTKDLDSTDALFVDVIHTAAGVL------GQWGPSGHADYYVNGGTSQPGCGS- 151
+Q + LD +DA+FVDVIHT + + G GH D++ NGG PGC
Sbjct: 183 CFQDEPEEVRLDPSDAVFVDVIHTDSSPIVPSLGFGMSQKVGHLDFFPNGGKEMPGCKKN 242
Query: 152 -FSIIEQL-----------SCDHTKVTPYFIESINTKRGFWAAPC 184
S I + SC+H + Y+ S+ GF PC
Sbjct: 243 VLSTITDIDGIWEGIGGFVSCNHLRSFEYYSSSVLNPDGFLGYPC 287
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 68 SIGAHIAGLTANYV-EKGRKLGRITGLDPTIIFYQ 101
++G+ I G NY+ EK R +GR G IFYQ
Sbjct: 170 AVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQ 204
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 68 SIGAHIAGLTANYV-EKGRKLGRITGLDPTIIFYQ 101
++G+ I G NY+ EK R +GR G IFYQ
Sbjct: 170 AVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQ 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,893,608
Number of Sequences: 62578
Number of extensions: 344702
Number of successful extensions: 856
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 817
Number of HSP's gapped (non-prelim): 14
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)