RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15133
(229 letters)
>gnl|CDD|238363 cd00707, Pancreat_lipase_like, Pancreatic lipase-like enzymes.
Lipases are esterases that can hydrolyze long-chain
acyl-triglycerides into di- and monoglycerides,
glycerol, and free fatty acids at a water/lipid
interface. A typical feature of lipases is "interfacial
activation," the process of becoming active at the
lipid/water interface, although several examples of
lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site.
Length = 275
Score = 224 bits (572), Expect = 2e-73
Identities = 84/206 (40%), Positives = 111/206 (53%), Gaps = 5/206 (2%)
Query: 6 AYFHKGDYNVIVVDYGSLVVVPCIDQISWSPSFAGACIAQLAYYLSQHPRGVPPEKLHLL 65
AY +GDYNVIVVD+G P Q + GA +A+ +L + G+ E +HL+
Sbjct: 60 AYLSRGDYNVIVVDWGRGAN-PNYPQAVNNTRVVGAELAKFLDFLVDNT-GLSLENVHLI 117
Query: 66 GWSIGAHIAGLTANYVEKGRKLGRITGLDPTIIFYQTNNKTKDLDSTDALFVDVIHTAAG 125
G S+GAH+AG + KLGRITGLDP + + LD +DA FVDVIHT G
Sbjct: 118 GHSLGAHVAGFAGKRL--NGKLGRITGLDPAGPLFSGADPEDRLDPSDAQFVDVIHTDGG 175
Query: 126 VLGQWGPSGHADYYVNGGTSQPGCGSFSIIEQ-LSCDHTKVTPYFIESINTKRGFWAAPC 184
+LG P GHAD+Y NGG QPGC + ++C H + YF ESI + GF A PC
Sbjct: 176 LLGFSQPIGHADFYPNGGRDQPGCPKDILSSDFVACSHQRAVHYFAESILSPCGFVAYPC 235
Query: 185 PNRFYYNLGWCDSPETQYVEMGERAN 210
+ + G C + V MG A+
Sbjct: 236 SSYDEFLAGKCFPCGSGCVRMGYHAD 261
>gnl|CDD|215752 pfam00151, Lipase, Lipase.
Length = 329
Score = 139 bits (352), Expect = 5e-40
Identities = 69/193 (35%), Positives = 93/193 (48%), Gaps = 23/193 (11%)
Query: 6 AYFHKGDYNVIVVDYGSLVVVPCIDQISWSPSFA-------GACIAQLAYYLSQHPRGVP 58
F NVIVVD+GS + A GA +A+L L + V
Sbjct: 96 NLFQVEGVNVIVVDWGSG--------STTFYRQATLNVRVVGAEVAKLLVELEEE-LNVS 146
Query: 59 PEKLHLLGWSIGAHIAGLTANYVEKGRKLGRITGLDPTIIFYQTNNKTKDLDSTDALFVD 118
PE +HL+G S+GAH+AG + KLGRITGLDP +++ + LD DA FVD
Sbjct: 147 PENVHLIGHSLGAHVAGEAGRRTKGKTKLGRITGLDPAGPYFKGTPELTRLDPGDADFVD 206
Query: 119 VIHTAAGVLGQWG-----PSGHADYYVNGGTSQPGCGSF--SIIEQLSCDHTKVTPYFIE 171
IHT + G GH D++ NGG+ QPGC + + ++C H + YF E
Sbjct: 207 AIHTDTRPIPGLGMGTSQRVGHVDFFPNGGSEQPGCQNNVLEGTQFVACAHMRSVRYFAE 266
Query: 172 SINTKRGFWAAPC 184
S+ R F A PC
Sbjct: 267 SLLNPRNFPAYPC 279
>gnl|CDD|132274 TIGR03230, lipo_lipase, lipoprotein lipase. Members of this
protein family are lipoprotein lipase (EC 3.1.1.34), a
eukaryotic triacylglycerol lipase active in plasma and
similar to pancreatic and hepatic triacylglycerol
lipases (EC 3.1.1.3). It is also called clearing factor.
It cleaves chylomicron and VLDL triacylglycerols; it
also has phospholipase A-1 activity.
Length = 442
Score = 94.6 bits (235), Expect = 2e-22
Identities = 67/209 (32%), Positives = 99/209 (47%), Gaps = 22/209 (10%)
Query: 7 YFHKGDYNVIVVDYGSLVVVPCIDQISWSPSFAGACIAQLAYYLSQHPRGVPPEKLHLLG 66
Y + NVIVVD+ S +++ G +A+ ++ Q P + +HLLG
Sbjct: 68 YEREPSANVIVVDWLSRAQQHYPTSAAYT-KLVGKDVAKFVNWM-QEEFNYPWDNVHLLG 125
Query: 67 WSIGAHIAGLTANYVEKGRKLGRITGLDPTIIFYQTNNKTKDLDSTDALFVDVIHTAA-- 124
+S+GAH+AG+ + + K+ RITGLDP ++ + L DA FVDV+HT
Sbjct: 126 YSLGAHVAGIAGSLTKH--KVNRITGLDPAGPTFEYADAPSTLSPDDADFVDVLHTNTRG 183
Query: 125 ---GVLGQWGPSGHADYYVNGGTSQPGCG-----------SFSIIEQL-SCDHTKVTPYF 169
+G P GH D Y NGGT QPGC ++QL C H + F
Sbjct: 184 SPDRSIGIQRPVGHIDIYPNGGTFQPGCDIQETLLVIAEKGLGNMDQLVKCSHERSIHLF 243
Query: 170 IES-INTKRGFWAAPCPNRFYYNLGWCDS 197
I+S +N + A C ++ +N G C S
Sbjct: 244 IDSLLNEENPSMAYRCSSKEAFNKGLCLS 272
>gnl|CDD|238382 cd00741, Lipase, Lipase. Lipases are esterases that can hydrolyze
long-chain acyl-triglycerides into di- and
monoglycerides, glycerol, and free fatty acids at a
water/lipid interface. A typical feature of lipases is
"interfacial activation", the process of becoming active
at the lipid/water interface, although several examples
of lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site.
Length = 153
Score = 73.7 bits (181), Expect = 1e-16
Identities = 40/146 (27%), Positives = 58/146 (39%), Gaps = 22/146 (15%)
Query: 39 AGACIA-QLAYYLSQHPRGVPPEKLHLLGWSIGAHIAGLTANY--VEKGRKLGRITGLDP 95
A +A + L P K+H+ G S+G +AGL +L R+ P
Sbjct: 6 AARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGP 65
Query: 96 TIIFYQTNNKTKDLDSTDALFVDVIHTAAGVLGQWGPS------GHADYYVNGGTSQPGC 149
+ LD +DALFVD I ++ + P G A++Y+NGG SQPGC
Sbjct: 66 PRVGNA-AFAEDRLDPSDALFVDRIVNDNDIVPRLPPGGEGYPHGGAEFYINGGKSQPGC 124
Query: 150 ------------GSFSIIEQLSCDHT 163
G+ + CDH
Sbjct: 125 CKNVLEAVDIDFGNIGLSGNGLCDHL 150
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 35.9 bits (83), Expect = 0.017
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 3 RPIAYFHKGDYNVIVVDYGSLVVVPCIDQISWSPSFAGACIAQLAYY-LSQHPRGVPPEK 61
P+A +GD +V+ + L+ D W + A Q A Y L Q +G
Sbjct: 3709 EPLAVILEGDRHVLGLTCRHLL----DD--GWQDTSLQAMAVQYADYILWQQAKG----P 3758
Query: 62 LHLLGWSIGAHIAGLTANYVEKGRKLGRITGL 93
LLGWS+G +A L A +E+ + GL
Sbjct: 3759 YGLLGWSLGGTLARLVAELLEREGESEAFLGL 3790
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 33.9 bits (78), Expect = 0.072
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 37 SFAGACIAQLAYYLSQHPRGVPPEKLHLLGWSIGAHIA-GLTANYVEKGRKLGRITGLD 94
S C A LA L Q P G HLLG+S+G +A G+ A +G ++ + LD
Sbjct: 1114 SLDEVCEAHLATLLEQQPHG----PYHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLD 1168
>gnl|CDD|215530 PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ hydro-lyase/
magnesium ion binding / thiamin pyrophosphate binding.
Length = 1655
Score = 31.8 bits (72), Expect = 0.39
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 11 GDYNVIVVD---YGSLVVVPCIDQISWSPSFAGACIAQLAYYLSQHPRGVPPEKLHLLGW 67
G I +D +G + + P+ + +A L Y L +H + P K+ L+G+
Sbjct: 1396 GSARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEH---ITPGKVTLVGY 1452
Query: 68 SIGAHIA 74
S+GA IA
Sbjct: 1453 SMGARIA 1459
>gnl|CDD|237388 PRK13443, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 136
Score = 30.3 bits (68), Expect = 0.43
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 125 GVLGQWGPSGHADYYVNGGTSQPGCGSFSIIEQLSCDHTKVT 166
G+L GPSG +Y V GG ++ S S++ + + ++T
Sbjct: 49 GILRAHGPSGTQEYAVTGGFAEINATSISVLAEKAIPVEELT 90
>gnl|CDD|216224 pfam00975, Thioesterase, Thioesterase domain. Peptide synthetases
are involved in the non-ribosomal synthesis of peptide
antibiotics. Next to the operons encoding these enzymes,
in almost all cases, are genes that encode proteins that
have similarity to the type II fatty acid thioesterases
of vertebrates. There are also modules within the
peptide synthetases that also share this similarity.
With respect to antibiotic production, thioesterases are
required for the addition of the last amino acid to the
peptide antibiotic, thereby forming a cyclic antibiotic.
Thioesterases (non-integrated) have molecular masses of
25-29 kDa.
Length = 224
Score = 30.0 bits (68), Expect = 0.75
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 4/89 (4%)
Query: 43 IAQLAYYLSQHPRGVPPEK-LHLLGWSIGAHIA-GLTANYVEKGRKLGR--ITGLDPTII 98
I +LA ++ R + PE L G S+G +A + +G + ++
Sbjct: 47 IEELAEEYAEALRRIQPEGPYALFGHSMGGLLAFEVARRLERRGEEPAGLILSDAYAPHF 106
Query: 99 FYQTNNKTKDLDSTDALFVDVIHTAAGVL 127
+ + D A + T +L
Sbjct: 107 GRREASHLLGDDELLAELRRIGGTPEALL 135
>gnl|CDD|213031 cd12105, HmuY, Bacterial proteins similar to Porphyromonas
gingivalis HmuY. HmuY is a hemophore that scavenges
heme from infected hosts and delivers it to the outer
membrane receptor HmuR. Related but uncharacterized
proteins do not appear to share the specific
heme-binding site.
Length = 121
Score = 28.4 bits (64), Expect = 1.4
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 137 DYYVNGGTSQPGCGSFSIIEQLSCDHTKVTP 167
D NGG S G G + ++ D V P
Sbjct: 42 DIRTNGGVSGTGKGGAADLKATDLDSAAVAP 72
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This
family contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 28.9 bits (65), Expect = 1.5
Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 18/96 (18%)
Query: 5 IAYFHKGDYNVIVVDY----GSLVVVPCIDQISWSPSFAGACIAQLAYYLSQHPRGVPPE 60
G Y V+ D S D +P A LA L +
Sbjct: 18 AEALAAG-YRVLAPDLPGHGDS-------DGPPRTPYSLEDDAADLAALLDA----LGLG 65
Query: 61 KLHLLGWSIGAHIAGLTANYVEKGRKLGRITGLDPT 96
+ L+G S+G +A A + ++ + + P
Sbjct: 66 PVVLVGHSLGGAVALAAA--ARRPERVAGLVLISPP 99
>gnl|CDD|225856 COG3319, COG3319, Thioesterase domains of type I polyketide
synthases or non-ribosomal peptide synthetases
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 257
Score = 28.9 bits (65), Expect = 2.0
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 44 AQLAYYLSQ----HPRGVPPEKLHLLGWSIGAHIA-GLTANYVEKGRKLGRITGLDP 95
A Y++ P G LLGWS+G +A + A +G ++ + LD
Sbjct: 49 DMAAAYVAAIRRVQPEGP----YVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDA 101
>gnl|CDD|233067 TIGR00641, acid_CoA_mut_N, methylmalonyl-CoA mutase N-terminal
domain. Methylmalonyl-CoA mutase (EC 5.4.99.2)
catalyzes a reversible isomerization between
L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an
adenosylcobalamin cofactor. It may be a homodimer, as in
mitochondrion, or a heterodimer with partially
homologous beta chain that does not bind the
adenosylcobalamin cofactor, as in Propionibacterium
freudenreichii. The most similar archaeal sequences are
separate chains, such as AF2215 abd AF2219 of
Archaeoglobus fulgidus, that correspond roughly to the
first 500 and last 130 residues, respectively of known
methylmalonyl-CoA mutases. This model describes the
N-terminal domain subfamily. In a neighbor-joining tree,
AF2215 branches with a bacterial isobutyryl-CoA mutase,
which is also the same length. Scoring between the noise
and trusted cutoffs are the non-catalytic, partially
homologous beta chains from certain heterodimeric
examples of 5.4.99.2.
Length = 524
Score = 29.0 bits (65), Expect = 2.5
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 29 IDQISWSPSFAGACIAQLAYY-LSQHPRGVPPEKL 62
+D++S S + GA + LA Y + +GVPPEKL
Sbjct: 121 LDKVSVSMTMNGAVLPILALYVVVAEEQGVPPEKL 155
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This
family contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 28.1 bits (63), Expect = 2.6
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 22/81 (27%)
Query: 1 MSRPIAYFHKGDYNVIVVDY---GSLVVVPCIDQISWSPSFAGACIAQLAYYLSQHPRGV 57
+ YNV+ VDY G+ + P + + L+ P
Sbjct: 15 YAPLARALASRGYNVVAVDYPGHGASLGAPDAEAV-----------------LADAPLD- 56
Query: 58 PPEKLHLLGWSIGAHIAGLTA 78
PE++ L+G S+G +A L A
Sbjct: 57 -PERIVLVGHSLGGGVALLLA 76
>gnl|CDD|182464 PRK10441, PRK10441, iron-enterobactin transporter membrane protein;
Provisional.
Length = 335
Score = 28.5 bits (64), Expect = 2.9
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 37 SFAGACIAQLAYYL--SQHPRGVPPEKLHLLGWSIGAHIAGLTANYVEKGRKLGRITGLD 94
+FAGA +A L SQ + P +L L G ++ A + GLT+ I L+
Sbjct: 124 AFAGALVASLIVAFTGSQGGGQLSPVRLTLAGVALAAVLEGLTSG----------IALLN 173
Query: 95 PTI 97
P +
Sbjct: 174 PDV 176
>gnl|CDD|216256 pfam01032, FecCD, FecCD transport family. This is a sub-family of
bacterial binding protein-dependent transport systems
family. This Pfam entry contains the inner components of
this multicomponent transport system.
Length = 311
Score = 28.2 bits (64), Expect = 3.0
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 34 WSPSFAGACIAQLAYY-LSQHPRGVPPEKLHLLGWSIGAHIAGLTA 78
+F GA +A L L++ G+ P +L L G ++ A + LT+
Sbjct: 103 PLAAFIGALLAALLVLFLARRRGGLSPLRLILAGIAVSALFSALTS 148
>gnl|CDD|223489 COG0412, COG0412, Dienelactone hydrolase and related enzymes
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 236
Score = 28.1 bits (63), Expect = 3.6
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 14/60 (23%)
Query: 41 ACIAQLAYYLSQHPRGVPPEKLHLLGWSIGAHIAGLTANYVEKGRKLGRITGLDPTIIFY 100
A + YL++ P+ V P+++ ++G+ +G +A L A R + + FY
Sbjct: 98 AALD----YLARQPQ-VDPKRIGVVGFCMGGGLALLAA---------TRAPEVKAAVAFY 143
>gnl|CDD|235939 PRK07114, PRK07114,
keto-hydroxyglutarate-aldolase/keto-deoxy-
phosphogluconate aldolase; Provisional.
Length = 222
Score = 28.1 bits (63), Expect = 3.8
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 147 PGCGSFSII---EQLSCDHTKVTP 167
PGCGS S I E+L C+ K+ P
Sbjct: 117 PGCGSLSEIGYAEELGCEIVKLFP 140
>gnl|CDD|234385 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosynthesis protein
LanM. Members of this family are known generally as
LanM, a multifunctional enzyme of lantibiotic
biosynthesis. This catalysis by LanM distinguishes the
type 2 lantibiotics, such as mersacidin, cinnamycin, and
lichenicidin, from LanBC-produced type 1 lantibiotics
such as nisin and subtilin. The N-terminal domain
contains regions associated with Ser and Thr
dehydration. The C-terminal region contains a pfam05147
domain, which catalyzes the formation of the lanthionine
bridge [Cellular processes, Toxin production and
resistance].
Length = 931
Score = 28.4 bits (64), Expect = 3.9
Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 14/93 (15%)
Query: 39 AGACIAQLAYYLSQHPRGVPPEKLH-LLGWSIGAHIAGLTANYVEKGRKLGRITGLDPTI 97
A + L YL R L G G I L LG++ D +
Sbjct: 621 ARKALQPLRKYLETQLRLAKSMGLGAFSGL--GGIIYALA--------HLGQLLN-DSEL 669
Query: 98 I--FYQTNNKTKDLDSTDALFVDVIHTAAGVLG 128
+ + N+ ++L D F+D+I AAG +
Sbjct: 670 LNDAKRILNRLEELIIKDEEFLDLIGGAAGAIL 702
>gnl|CDD|237017 PRK11904, PRK11904, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1038
Score = 27.9 bits (63), Expect = 5.4
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 9/32 (28%)
Query: 53 HPRGVPPEKLHLL---GWSIGA------HIAG 75
H G+P + L LL G ++GA IAG
Sbjct: 735 HEAGIPKDVLQLLPGDGATVGAALTADPRIAG 766
>gnl|CDD|224438 COG1521, COG1521, Pantothenate kinase type III (Bvg accessory
factor family protein) [Transcription].
Length = 251
Score = 27.3 bits (61), Expect = 5.6
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 5 IAYFHKGDYNVIVVDYGSLVVVPCIDQISWSPSFAGACIA 44
+A +HK V+VVD+G+ ID + + G I
Sbjct: 114 VAAYHKYGKAVVVVDFGTAT---TIDLVDEGGRYLGGAIL 150
>gnl|CDD|223721 COG0648, Nfo, Endonuclease IV [DNA replication, recombination, and
repair].
Length = 280
Score = 27.2 bits (61), Expect = 6.7
Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 7/75 (9%)
Query: 69 IGAHIAGLTANYVEKGRKLGRITGLDPTIIF--YQTNNKTKDLDSTDALFVDVIHTAAGV 126
GAH + + + R GL+ IF + L ++ A
Sbjct: 4 FGAHGSPAGGKSLVNAVERAREIGLNAFEIFLVNPRVWISPPLAEDAI---ELFKAALKD 60
Query: 127 LGQWGPSGHADYYVN 141
Q S HA Y +N
Sbjct: 61 DVQL--SVHAPYLIN 73
>gnl|CDD|233084 TIGR00671, baf, pantothenate kinase, type III. This model
describes a family of proteins found in a single copy in
at least ten different early completed bacterial
genomes. The only characterized member of the family is
Bvg accessory factor (Baf), a protein required, in
addition to the regulatory operon bvgAS, for
heterologous transcription of the Bordetella pertussis
toxin operon (ptx) in E. coli [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pantothenate
and coenzyme A].
Length = 243
Score = 27.0 bits (60), Expect = 6.9
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 6 AYFHKGDYNVIVVDYGSLVVVPCIDQISWSPSFAGACIA 44
A G +NV+VVD G+ + ID + F G IA
Sbjct: 110 AIKFYG-FNVVVVDAGTAL---TIDLVDQEGKFLGGAIA 144
>gnl|CDD|220638 pfam10230, DUF2305, Uncharacterized conserved protein (DUF2305).
This family of proteins is conserved from plants to
humans. The function is unknown.
Length = 260
Score = 26.9 bits (60), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 61 KLHLLGWSIGAHIAGLTANYVEKGRKLGRITGLDPTII 98
KL L+G SIGA+IA + ++ + L PTI
Sbjct: 80 KLILIGHSIGAYIALEVLKRLSLKFRIKKCVLLFPTIE 117
>gnl|CDD|153129 cd01351, Aconitase, Aconitase catalytic domain; Aconitase catalyzes
the reversible isomerization of citrate and isocitrate
as part of the TCA cycle. Aconitase catalytic domain.
Aconitase (aconitate hydratase) catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. Cis-aconitate is formed as an intermediate
product during the course of the reaction. In eukaryotes
two isozymes of aconitase are known to exist: one found
in the mitochondrial matrix and the other found in the
cytoplasm. Aconitase, in its active form, contains a
4Fe-4S iron-sulfur cluster; three cysteine residues
have been shown to be ligands of the 4Fe-4S cluster.
This is the Aconitase core domain, including structural
domains 1, 2 and 3, which binds the Fe-S cluster. The
aconitase family also contains the following proteins: -
Iron-responsive element binding protein (IRE-BP), a
cytosolic protein that binds to iron-responsive elements
(IREs). IREs are stem-loop structures found in the
5'UTR of ferritin, and delta aminolevulinic acid
synthase mRNAs, and in the 3'UTR of transferrin
receptor mRNA. IRE-BP also express aconitase activity. -
3-isopropylmalate dehydratase (isopropylmalate
isomerase), the enzyme that catalyzes the second step in
the biosynthesis of leucine. - Homoaconitase
(homoaconitate hydratase), an enzyme that participates
in the alpha-aminoadipate pathway of lysine
biosynthesis and that converts cis-homoaconitate into
homoisocitric acid.
Length = 389
Score = 27.1 bits (60), Expect = 9.6
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 118 DVIHTAAGVLGQWGPSGHADYYVNGGTSQPGC 149
DV+ G++G G + G S
Sbjct: 145 DVVLKLGGIVGVDGVLNRIVEFYGEGVSSLSI 176
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.138 0.445
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,920,218
Number of extensions: 1109828
Number of successful extensions: 920
Number of sequences better than 10.0: 1
Number of HSP's gapped: 910
Number of HSP's successfully gapped: 30
Length of query: 229
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 135
Effective length of database: 6,768,326
Effective search space: 913724010
Effective search space used: 913724010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)