RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15133
(229 letters)
>1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET:
DDQ; 2.99A {Equus caballus}
Length = 452
Score = 190 bits (483), Expect = 2e-58
Identities = 68/233 (29%), Positives = 93/233 (39%), Gaps = 24/233 (10%)
Query: 6 AYFHKGDYNVIVVDYGSLVVVPCIDQISWSPSFAGACIAQLAYYLSQHPRGVPPEKLHLL 65
N I VD+ S + GA A L L PE +H++
Sbjct: 94 KILQVETTNCISVDWSSGAKAEYTQAVQNIR-IVGAETAYLIQQLLTE-LSYNPENVHII 151
Query: 66 GWSIGAHIAGLTANYVEKGRKLGRITGLDPTIIFYQTNNKTKDLDSTDALFVDVIHTAAG 125
G S+GAH AG + ++GR+TGLDP +Q ++ LD +DA FVDVIHT A
Sbjct: 152 GHSLGAHTAGEAGRRL--EGRVGRVTGLDPAEPCFQDASEEVRLDPSDAQFVDVIHTDAS 209
Query: 126 VL------GQWGPSGHADYYVNGGTSQPGCGSFS-------------IIEQLSCDHTKVT 166
+ G GH D++ NGG PGC S + L+C+H K
Sbjct: 210 PMLPSLGFGMSQKVGHMDFFPNGGKQMPGCKRSSFSTFIDINGIWQGAQDYLACNHLKSF 269
Query: 167 PYFIESINTKRGFWAAPCPNRFYYNLGWCDS-PETQYVEMGERANPNSLIPYP 218
Y+ SI GF A PC + + C P +MG A+
Sbjct: 270 EYYSSSILNPDGFLAYPCDSYDKFQENGCFPCPAGGCPKMGHYADQYKEKTSA 322
>1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus}
SCOP: b.12.1.2 c.69.1.19
Length = 449
Score = 187 bits (476), Expect = 2e-57
Identities = 63/225 (28%), Positives = 90/225 (40%), Gaps = 24/225 (10%)
Query: 6 AYFHKGDYNVIVVDYGSLVVVPCIDQISWSPSFAGACIAQLAYYLSQHPRGVPPEKLHLL 65
F N I VD+ S Q S + GA +A L L P +H++
Sbjct: 93 NMFKVESVNCICVDWKSGSR-TAYSQASQNVRIVGAEVAYLVGVLQSS-FDYSPSNVHII 150
Query: 66 GWSIGAHIAGLTANYVEKGRKLGRITGLDPTIIFYQTNNKTKDLDSTDALFVDVIHTAAG 125
G S+G+H AG +GRITGLDP +Q + LD +DA FVDVIHT
Sbjct: 151 GHSLGSHAAGEAGRRT--NGAVGRITGLDPAEPCFQGTPELVRLDPSDAQFVDVIHTDIA 208
Query: 126 VL------GQWGPSGHADYYVNGGTSQPGCGSF-------------SIIEQLSCDHTKVT 166
G +GH D++ NGG PGC + +C+H +
Sbjct: 209 PFIPNLGFGMSQTAGHLDFFPNGGKEMPGCQKNVLSQIVDIDGIWQGTRDFAACNHLRSY 268
Query: 167 PYFIESINTKRGFWAAPCPNRFYYNLGWCDSPETQY-VEMGERAN 210
Y+ +SI GF C + + C ++ +MG A+
Sbjct: 269 KYYTDSILNPDGFAGFSCASYSDFTANKCFPCSSEGCPQMGHYAD 313
>1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation,
pancreas, glycoprotein, chimeric; 2.01A {Cavia
porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B*
1n8s_A
Length = 432
Score = 183 bits (466), Expect = 4e-56
Identities = 68/212 (32%), Positives = 92/212 (43%), Gaps = 16/212 (7%)
Query: 6 AYFHKGDYNVIVVDYGSLVVVPCIDQISWSPSFAGACIAQLAYYLSQHPRGVPPEKLHLL 65
F N I VD+ Q S + GA +A L LS PE +H++
Sbjct: 94 NMFQVEKVNCICVDWKGGSK-AQYSQASQNIRVVGAEVAYLVQVLSTS-LNYAPENVHII 151
Query: 66 GWSIGAHIAGLTANYVEKGRKLGRITGLDPTIIFYQTNNKTKDLDSTDALFVDVIHTAAG 125
G S+GAH AG + +GRITGLDP ++Q + LD +DA FVDVIHT
Sbjct: 152 GHSLGAHTAGEAGKRL--NGLVGRITGLDPAEPYFQDTPEEVRLDPSDAKFVDVIHTDIS 209
Query: 126 V------LGQWGPSGHADYYVNGGTSQPGCGSFSIIEQLSCDHTKVTPYFIESINTKRGF 179
G GH D++ NGG PGC + +SC+H + Y+ SI GF
Sbjct: 210 PILPSLGFGMSQKVGHMDFFPNGGKDMPGCKTG-----ISCNHHRSIEYYHSSILNPEGF 264
Query: 180 WAAPCPNRFYYNLGWCDS-PETQYVEMGERAN 210
PC + + C P +MG A+
Sbjct: 265 LGYPCASYDEFQESGCFPCPAKGCPKMGHFAD 296
>1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid
degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP:
b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A*
Length = 452
Score = 180 bits (457), Expect = 1e-54
Identities = 70/233 (30%), Positives = 96/233 (41%), Gaps = 24/233 (10%)
Query: 6 AYFHKGDYNVIVVDYGSLVVVPCIDQISWSPSFAGACIAQLAYYLSQHPRGVPPEKLHLL 65
F N I VD+ Q S++ GA IA L LS G PE +HL+
Sbjct: 94 KMFQVEKVNCICVDWRRGSRTEYT-QASYNTRVVGAEIAFLVQVLSTE-MGYSPENVHLI 151
Query: 66 GWSIGAHIAGLTANYVEKGRKLGRITGLDPTIIFYQTNNKTKDLDSTDALFVDVIHTAAG 125
G S+GAH+ G + +GRITGLDP +Q + LD +DA+FVDVIHT +
Sbjct: 152 GHSLGAHVVGEAGRRL--EGHVGRITGLDPAEPCFQGLPEEVRLDPSDAMFVDVIHTDSA 209
Query: 126 VL------GQWGPSGHADYYVNGGTSQPGCGSF-------------SIIEQLSCDHTKVT 166
+ G GH D++ NGG PGC ++C+H +
Sbjct: 210 PIIPYLGFGMSQKVGHLDFFPNGGKEMPGCQKNILSTIVDINGIWEGTQNFVACNHLRSY 269
Query: 167 PYFIESINTKRGFWAAPCPNRFYYNLGWCDS-PETQYVEMGERANPNSLIPYP 218
Y+ SI GF PC + + C PE +MG A+
Sbjct: 270 KYYASSILNPDGFLGYPCSSYEKFQQNDCFPCPEEGCPKMGHYADQFEGKTAT 322
>1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation;
HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2
c.69.1.19 PDB: 2ppl_A
Length = 450
Score = 178 bits (453), Expect = 5e-54
Identities = 70/233 (30%), Positives = 101/233 (43%), Gaps = 25/233 (10%)
Query: 6 AYFHKGDYNVIVVDYGSLVVVPCIDQISWSPSFAGACIAQLAYYLSQHPRGVPPEKLHLL 65
F + N I VD+ Q + + GA +AQ+ LS + P ++ L+
Sbjct: 94 NMFKVEEVNCICVDWKKGSQ-TSYTQAANNVRVVGAQVAQMLSMLSAN-YSYSPSQVQLI 151
Query: 66 GWSIGAHIAGLTANYVEKGRKLGRITGLDPTIIFYQTNNKTKDLDSTDALFVDVIHTAAG 125
G S+GAH+AG + LGRITGLDP +Q + LD TDA FVDVIHT A
Sbjct: 152 GHSLGAHVAGEAGSRT---PGLGRITGLDPVEASFQGTPEEVRLDPTDADFVDVIHTDAA 208
Query: 126 VL------GQWGPSGHADYYVNGGTSQPGCGSF-------------SIIEQLSCDHTKVT 166
L G GH D++ NGG PGC + ++C+H +
Sbjct: 209 PLIPFLGFGTSQQMGHLDFFPNGGEEMPGCKKNALSQIVDLDGIWEGTRDFVACNHLRSY 268
Query: 167 PYFIESINTKRGFWAAPCPNRFYYNLGWCDS-PETQYVEMGERANPNSLIPYP 218
Y+ ESI GF + PC + + C P+ +MG A+ ++
Sbjct: 269 KYYSESILNPDGFASYPCASYRAFESNKCFPCPDQGCPQMGHYADKFAVKTSD 321
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.001
Identities = 37/263 (14%), Positives = 67/263 (25%), Gaps = 70/263 (26%)
Query: 7 YFHKGDYNVIVVDYGSLVVVPCIDQISWSPSFAGACIAQL-AYYLSQHPRGV-------- 57
+ H D+ Y D + F A + + P+ +
Sbjct: 3 HHHHMDFETGEHQYQ------YKDIL---SVFEDAFVDNFDCKDVQDMPKSILSKEEIDH 53
Query: 58 ------PPEKLHLLGWSI---GAHIA------GLTANY---VEKGRKLGRITGLDPTIIF 99
L W++ + L NY + + R + +
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 100 YQTNNKTKDLDSTDALFV---DVIHTAAGVLGQWGPSGHADYYVNGGTSQPGCGSFSIIE 156
Q + D V L + P + ++G G G + +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP--AKNVLIDG---VLGSGK-TWVA 167
Query: 157 QLSCDHTKVTPYFIESINTKRGFWAAPCPNRFYYNLGWCDSPETQYVEMGER-------- 208
C KV I FW NL C+SPET +EM ++
Sbjct: 168 LDVCLSYKVQCKMDFKI-----FWL---------NLKNCNSPETV-LEMLQKLLYQIDPN 212
Query: 209 --ANPNSLIPYPFEYGSKESSKK 229
+ + S ++ +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELR 235
Score = 31.0 bits (69), Expect = 0.35
Identities = 28/215 (13%), Positives = 55/215 (25%), Gaps = 67/215 (31%)
Query: 14 NVIVVDYGSLVVVPCIDQISWSPSFA-GACIAQLAYYLSQHPRGVPPE--KLHLLGWSIG 70
V D+ S I S + + L YL P+ +P E + SI
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI- 332
Query: 71 AHIAGLTANYVEKGRKLGRITGLDPTIIFYQTNNKTKDLDSTDALFVDVIHTAAGVLGQW 130
IA + + T ++ N K L + ++V+
Sbjct: 333 --IAESIRDGLA-------------TWDNWKHVNCDK-LTTIIESSLNVLE--------- 367
Query: 131 GPSGHADYYVNGGTSQPGCGSFSIIEQLSCDHTKVTPYFIESINTKRGFWAAPCPNRFYY 190
P+ + + S+ + + I
Sbjct: 368 -PAEYRKMFD----------RLSVFP----PSAHIPTILLSLI----------------- 395
Query: 191 NLGWCDSPETQYVEMGERANPNSLI---PYPFEYG 222
W D ++ + + + + SL+ P
Sbjct: 396 ---WFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.008
Identities = 44/217 (20%), Positives = 63/217 (29%), Gaps = 78/217 (35%)
Query: 18 VDYGSLVVVPCIDQISWSPSFAGACIAQLA-YYLSQHPRGVPPEKLHLLGWSIGAHIAGL 76
DY L+ +P IS P + QLA Y ++ G P +L +++ G
Sbjct: 228 KDY--LLSIP----ISC-P---LIGVIQLAHYVVTAKLLGFTPGELR-------SYLKGA 270
Query: 77 TANYVEKGRKLGRITGLDPTII--------FYQTNNKTKDLDSTDALFVDVI----HTAA 124
T G G +T + I F+ + K + LF I + A
Sbjct: 271 T------GHSQGLVTAV---AIAETDSWESFFV--SVRKAI---TVLF--FIGVRCYEAY 314
Query: 125 GVLGQWGPSGHADYYVNG-GTSQPGCGSFSIIEQLSC---DHTKVTPYFIESINTKRGFW 180
PS D N G P LS +V Y + N+
Sbjct: 315 PNTSLP-PSILEDSLENNEGVPSP---------MLSISNLTQEQVQDY-VNKTNSH---- 359
Query: 181 AAPCPNRFY---YNLGWCDSPETQYVEMGERANPNSL 214
P + N V G P SL
Sbjct: 360 -LPAGKQVEISLVN-----GA-KNLVVSG---PPQSL 386
Score = 34.6 bits (79), Expect = 0.026
Identities = 41/256 (16%), Positives = 70/256 (27%), Gaps = 99/256 (38%)
Query: 2 SRPIAYFHKGDYNVIVVDYGSL---VVVPCIDQISWSPSFAGACIAQL----AYYLSQHP 54
+RP+ + +GSL ++VP + SF A +QL L +
Sbjct: 6 TRPL-----------TLSHGSLEHVLLVP-------TASFFIA--SQLQEQFNKILPEPT 45
Query: 55 RGV-----PPEKLHLLGWSIGAHIAGLTANYVEKGRK------------------LG--- 88
G P L+ G ++ VE + L
Sbjct: 46 EGFAADDEPTTPAELV-----GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND 100
Query: 89 ------RITGLDPTII---------FYQTN---NKTKDLDSTDALFVDVIHTAAGVL--- 127
++ + T + + + D S ALF V A ++
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 128 -GQWGPSGHADYYVN-----GGTSQPGCGSF-----SIIEQLSCDHTKVTPYFIESINTK 176
GQ G+ D Y T G + +L F + +N
Sbjct: 161 GGQ----GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 177 RGFW---AAPCPNRFY 189
W + P++ Y
Sbjct: 217 E--WLENPSNTPDKDY 230
Score = 33.1 bits (75), Expect = 0.079
Identities = 38/230 (16%), Positives = 62/230 (26%), Gaps = 109/230 (47%)
Query: 65 LGWSIGAHI-----AGLTANYV-EKGRKLGRI-------TGLDPTI----IFYQTNNKTK 107
G+SI I LT ++ EKG+++ T +D + IF + N +
Sbjct: 1657 YGFSI-LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST 1715
Query: 108 D---------LDSTD----ALFV-----------------DVI---H-----TA----AG 125
L +T AL + D H A A
Sbjct: 1716 SYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD 1775
Query: 126 VL----------------------GQWGPSGHADYYVNGGTSQPGCGS---FSIIEQLSC 160
V+ + G S + +N G ++E++
Sbjct: 1776 VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG- 1834
Query: 161 DHTKVTPYFIESINTKRGFWAAPCPNRFYYNLGWCDSPETQYVEMGERAN 210
K T + +E +N YN QYV G+
Sbjct: 1835 ---KRTGWLVEIVN---------------YN-----VENQQYVAAGDLRA 1861
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase
fold, carboxylesterase, Ser- hydrolase; 2.00A
{Streptococcus mutans}
Length = 292
Score = 34.2 bits (78), Expect = 0.023
Identities = 24/141 (17%), Positives = 40/141 (28%), Gaps = 19/141 (13%)
Query: 3 RPIAYFHKGDYNVIVVD---YG-SLVVVPCIDQISWSPSFAGACIAQLAYYLSQHPRGVP 58
I ++ +D G S P +Q + I + +
Sbjct: 60 ANIIDKLPDSIGILTIDAPNSGYS----PVSNQANVGLRDWVNAILMIFEHFKF------ 109
Query: 59 PEKLHLLGWSIGAHIA-GLTANYVEKGRKLGRITGLDPTIIFYQTNNKTKDLDSTDALFV 117
+ L SIG A + + GL+PT + + DL AL
Sbjct: 110 -QSYLLCVHSIGGFAALQIMNQSSK---ACLGFIGLEPTTVMIYRAGFSSDLYPQLALRR 165
Query: 118 DVIHTAAGVLGQWGPSGHADY 138
+ TAA L + +
Sbjct: 166 QKLKTAADRLNYLKDLSRSHF 186
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 31.3 bits (71), Expect = 0.21
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 49 YLSQHPRGVPPEKLHLLGWSIGAHIAGLTA 78
L+ P V + ++G S G +++ L
Sbjct: 91 QLASLP-YVDAHSIAVVGLSYGGYLSALLT 119
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 31.1 bits (71), Expect = 0.30
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 62 LHLLGWSIGAHIAGLTANYVEK-GRKLGRITGLDPTIIFYQTNNKTKDLDSTDALFVDVI 120
L L G+S G +A A +E+ GR + RI +D ++ + ++S ++V
Sbjct: 1114 LTLFGYSAGCSLAFEAAKKLEEQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNVN 1173
>1r3d_A Conserved hypothetical protein VC1974; structural genomics,
hydrolase, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP:
c.69.1.35
Length = 264
Score = 30.4 bits (69), Expect = 0.42
Identities = 10/94 (10%), Positives = 26/94 (27%), Gaps = 25/94 (26%)
Query: 5 IAYFHKGDYNVIVVD---YGSLVVVPCIDQISWSPSFAGACIAQLAY----YLSQHPRGV 57
+++ + + +D +G+ +P A+ + H
Sbjct: 36 LSHLARTQCAALTLDLPGHGT------------NPERHCDNFAEAVEMIEQTVQAH--VT 81
Query: 58 PPEKLHLLGWSIGAHIAGLTA----NYVEKGRKL 87
+ L+G+S+G + R
Sbjct: 82 SEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGA 115
>2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta
hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces
venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A
1mnq_A
Length = 319
Score = 30.3 bits (68), Expect = 0.47
Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 6/52 (11%)
Query: 44 AQLAYYLSQHPRGVPPEKLHLLGWSIGAHIAGLTANYVEKGRKLGRITGLDP 95
L R + LLG + GA +A A +L R G P
Sbjct: 145 TALDAQARAILRAAGDAPVVLLGHAGGALLAHELA------FRLERAHGAPP 190
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics,
PSI, protei structure initiative; HET: MSE 3OH; 1.70A
{Escherichia coli} SCOP: c.69.1.26
Length = 258
Score = 29.9 bits (68), Expect = 0.60
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 19/66 (28%)
Query: 12 DYNVIVVD---YGSLVVVPCIDQISWSPSFAGACIAQLAYYLSQHPRGVPPEKLHLLGWS 68
+ + +VD +G S F +A +A + Q P+K LGWS
Sbjct: 39 HFTLHLVDLPGFGR------------SRGFGALSLADMAEAVLQQA----PDKAIWLGWS 82
Query: 69 IGAHIA 74
+G +A
Sbjct: 83 LGGLVA 88
>3bjr_A Putative carboxylesterase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 2.09A {Lactobacillus plantarum WCFS1}
Length = 283
Score = 29.4 bits (66), Expect = 0.78
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 23/92 (25%)
Query: 3 RPIA-YFHKGDYNVIVVDY------GSLVVVPCIDQISWSPSFAGACIAQLAY-YLSQHP 54
+A F Y ++Y L + P +D A L QH
Sbjct: 70 ESLAMAFAGHGYQAFYLEYTLLTDQQPLGLAPVLD-------------LGRAVNLLRQHA 116
Query: 55 R--GVPPEKLHLLGWSIGAHIAGLTANYVEKG 84
+ P+++ G+S+G HI L +Y
Sbjct: 117 AEWHIDPQQITPAGFSVGGHIVALYNDYWATR 148
>3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration
switch protein, hydrolase ACTI lyase; 2.20A {Vibrio
vulnificus} PDB: 3our_A
Length = 415
Score = 29.6 bits (66), Expect = 0.92
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 12/83 (14%)
Query: 6 AYFHKGDYNVIVVDY---GSLVVVPCIDQISWSPSFAGACIAQLAYYLSQHPRGVPPEKL 62
+ K D ++ VD G P + + A + L P V ++
Sbjct: 215 DHLAKHDIAMLTVDMPSVGYSSKYP-LTEDYSRL--HQAVLN----ELFSIP-YVDHHRV 266
Query: 63 HLLGWSIGAHIAGLTANYVEKGR 85
L+G+ G + + +++E+ +
Sbjct: 267 GLIGFRFGGNAM-VRLSFLEQEK 288
>2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid
synthase, drug complex, tetrahydrolipstatin,
transferase; HET: DH9; 2.30A {Homo sapiens}
Length = 316
Score = 29.1 bits (65), Expect = 1.0
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 43 IAQLAYYLSQHPRGVPPEK-LHLLGWSIGAHIA 74
I LA Y R V PE + G+S GA +A
Sbjct: 87 IHSLAAYYIDCIRQVQPEGPYRVAGYSYGACVA 119
>3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase,
polyketide synthase, phosphopantetheine, transferase,
hydrolase; 2.00A {Streptomyces SP}
Length = 319
Score = 29.1 bits (65), Expect = 1.1
Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 44 AQLAYYLSQHPRGVPPEKLHLLGWSIGAHIAGLTANYVEK-GRKLGRITGLDP 95
+ V + L G S G +A A +E G + +D
Sbjct: 132 VLVRSLADVVQAEVADGEFALAGHSSGGVVAYEVARELEARGLAPRGVVLIDS 184
>3e0x_A Lipase-esterase related protein; APC60309, clostridium
acetobutylicum ATCC 824, structural genomics, PSI-2;
HET: MSE; 1.45A {Clostridium acetobutylicum}
Length = 245
Score = 28.8 bits (65), Expect = 1.2
Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 22/115 (19%)
Query: 5 IAYFHKGDYNVIVVD---YG-SLVVVPCIDQISWSPSFAGACIAQLAYYLSQHPRGVPPE 60
Y DYN I++D +G S P + +A +
Sbjct: 36 EKYLE--DYNCILLDLKGHGESKGQCP------STVYGYIDNVANFITNSEVT---KHQK 84
Query: 61 KLHLLGWSIGAHIA-GLTANYVEKGRKL------GRITGLDPTIIFYQTNNKTKD 108
+ L+G+S+G I G+ + RK+ R LD + +N+ +
Sbjct: 85 NITLIGYSMGGAIVLGVALKKLPNVRKVVSLSGGARFDKLDKDFMEKIYHNQLDN 139
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
alpha/beta hydrolase, META-cleavage pathway; 2.1A
{Arthrobacter nicotinovorans} SCOP: c.69.1.41
Length = 386
Score = 29.2 bits (65), Expect = 1.2
Identities = 9/82 (10%), Positives = 21/82 (25%), Gaps = 12/82 (14%)
Query: 1 MSRPIAYFHKGDYNVIVVDY----GSLVVVPCIDQISWSPSFAGACIAQLAYYLSQHPRG 56
+ D + A + L++
Sbjct: 168 SFQMENLVLDRGMATATFDGPGQGEMFEYKRIAGDYEK---YTSAVVD----LLTKLEA- 219
Query: 57 VPPEKLHLLGWSIGAHIAGLTA 78
+ + + +LG S+G + A +A
Sbjct: 220 IRNDAIGVLGRSLGGNYALKSA 241
>1kez_A Erythronolide synthase; polyketide synthase, modular polyketide
synthase, thioesterase, 6-DEB, TE, DEBS, alpha,
beta-hydrolase; 2.80A {Saccharopolyspora erythraea}
SCOP: c.69.1.22 PDB: 1mo2_A
Length = 300
Score = 29.0 bits (65), Expect = 1.3
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 44 AQLAYYLSQHPRGVPPEKLHLLGWSIGAHIA 74
A A R + + G S GA +A
Sbjct: 118 AVAAVQADAVIRTQGDKPFVVAGHSAGALMA 148
>3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis,
hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A
{Homo sapiens} PDB: 1xkt_A
Length = 283
Score = 28.7 bits (64), Expect = 1.4
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 43 IAQLAYYLSQHPRGVPPEK-LHLLGWSIGAHIA 74
I LA Y R V PE + G+S GA +A
Sbjct: 65 IHSLAAYYIDCIRQVQPEGPYRVAGYSYGACVA 97
>3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich,
structural genomics, PSI-2, prote structure initiative;
1.74A {Klebsiella pneumoniae subsp}
Length = 241
Score = 28.4 bits (64), Expect = 1.5
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 11/89 (12%)
Query: 43 IAQLAYYLSQHPRGVPPEKLHLLGWSIGAHIAGLTANYVEKGRKLGRITGLDPTIIFYQT 102
+ +A + ++H +L + G+ G I L A L + +Y
Sbjct: 100 LDHVASWAARHG--GDAHRLLITGFCWGGRITWLYA---------AHNPQLKAAVAWYGK 148
Query: 103 NNKTKDLDSTDALFVDVIHTAAGVLGQWG 131
K L+S + A VLG +G
Sbjct: 149 LVGEKSLNSPKHPVDIAVDLNAPVLGLYG 177
>3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2,
protein structure initiative; 3.20A {Lactococcus lactis
subsp}
Length = 276
Score = 28.2 bits (63), Expect = 1.9
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Query: 3 RPIA-YFHKGDYNVIVVDYGSLVVVPCIDQISWSPSFAGACI-AQLAY-YLSQHPR--GV 57
P+A F Y V++++Y +++ + + Q + + Q+ + +
Sbjct: 63 DPLALAFLAQGYQVLLLNY------TVMNKGTNYNFLSQNLEEVQAVFSLIHQNHKEWQI 116
Query: 58 PPEKLHLLGWSIGAHIAGLTANYVEKGR 85
PE++ LLG S G H+A N + R
Sbjct: 117 NPEQVFLLGCSAGGHLAAWYGNSEQIHR 144
>1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic
acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET:
2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D
1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A
2es4_A 1tah_B 1qge_D 1qge_E
Length = 320
Score = 28.5 bits (63), Expect = 2.1
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 14/78 (17%)
Query: 6 AYFHKGDYNVIVVDYGSLVVVPCIDQISWSPSFAGACIAQLAYYLSQHPRGVPPEKLHLL 65
+ V V + D + QL Y+ K++L+
Sbjct: 35 EDLQQRGATVYVANLSGF---QSDDGPNGR-------GEQLLAYVKTVLAATGATKVNLV 84
Query: 66 GWSIGAHIAGLTANYVEK 83
G S G GLT+ YV
Sbjct: 85 GHSQG----GLTSRYVAA 98
>2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo
sapiens} PDB: 2oci_A* 2ock_A 2ocl_A
Length = 254
Score = 28.0 bits (63), Expect = 2.4
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 60 EKLHLLGWSIGAHIA-GLTANYVEKGRKL------GRITGLDPTI 97
+K+ LLGWS G A A Y K+ +T D I
Sbjct: 94 KKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMI 138
>3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold
seven-stranded beta-sandwich, structural genomics,
structural genomics consortium, SGC; 2.40A {Homo
sapiens}
Length = 422
Score = 28.2 bits (62), Expect = 2.6
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 49 YLSQHPRGVPPEKLHLLGWSIGAHIAGLTANY 80
Y+ QHP V + LLG S+GA I A++
Sbjct: 215 YMLQHP-QVKGPGIGLLGISLGADICLSMASF 245
>3tej_A Enterobactin synthase component F; nonribosomal peptide,
thioesterase, carrier domain, ATP- BIN enterobactin
biosynthesis, ION transport, iron; HET: UF0; 1.90A
{Escherichia coli} PDB: 2roq_A
Length = 329
Score = 27.7 bits (62), Expect = 3.2
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 9/37 (24%)
Query: 43 IAQLA-YYL----SQHPRGVPPEKLHLLGWSIGAHIA 74
+ ++ +L Q P G P +LLG+S+G +A
Sbjct: 148 LDEVCEAHLATLLEQQPHG--P--YYLLGYSLGGTLA 180
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix
bundle, structural genomics protein structure
initiative; HET: PGE; 2.12A {Streptococcus mutans}
Length = 405
Score = 27.7 bits (61), Expect = 3.2
Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 7/73 (9%)
Query: 6 AYFHKGDYNVIVVDYGSLVVVPCIDQISWSPSFAGACIAQLAYYLSQHPRGVPPEKLHLL 65
+ DYNV++VD P + + P EK+ +
Sbjct: 181 YSGWEHDYNVLMVDL------PGQGKNPNQGLHFEVDARAAISAILDWY-QAPTEKIAIA 233
Query: 66 GWSIGAHIAGLTA 78
G+S G +
Sbjct: 234 GFSGGGYFTAQAV 246
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone
biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Length = 269
Score = 27.7 bits (62), Expect = 3.4
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 16/74 (21%)
Query: 5 IAYFHKGDYNVIVVD---YG-SLVVVPCIDQISWSPSFAGACIAQLAYYLSQHPRGVPPE 60
I F +Y+VI +D +G +W+ + + ++ +
Sbjct: 36 IEKF-TDNYHVITIDLPGHGED----QSSMDETWNFDYITTLLDRILDKY-----KD--K 83
Query: 61 KLHLLGWSIGAHIA 74
+ L G+S+G +A
Sbjct: 84 SITLFGYSMGGRVA 97
>2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.92A {Anabaena variabilis}
Length = 223
Score = 27.6 bits (61), Expect = 3.5
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 49 YLSQHPRGVPPEKLHLLGWSIGAHIAGLTANY 80
+L+ +P K+ G S G A + A
Sbjct: 104 WLTHNPD-TQHLKVGYFGASTGGGAALVAAAE 134
>1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide
synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A
{Bacillus subtilis} SCOP: c.69.1.22
Length = 230
Score = 27.4 bits (61), Expect = 3.7
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 8/32 (25%)
Query: 47 AYYLSQ----HPRGVPPEKLHLLGWSIGAHIA 74
Y P G P L L G+S G +A
Sbjct: 58 DRYADLIQKLQPEG--P--LTLFGYSAGCSLA 85
>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta
hydrolase fold; 2.10A {Escherichia coli}
Length = 289
Score = 27.3 bits (61), Expect = 3.9
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 1 MSRPIAYFHKGDYNVIVVD---YG-SLVVVPCIDQISWSPSFAGACIAQLAYYLSQHPRG 56
SR I + Y VI++D +G S D + S S + L + Q
Sbjct: 55 FSRNIDPLVEAGYRVILLDCPGWGKS-------DSVVNSGSRSDLNARILKSVVDQL--D 105
Query: 57 VPPEKLHLLGWSIGAHIA-GLTANYVEKGRKL 87
+ K+HLLG S+G H + T + E+ KL
Sbjct: 106 I--AKIHLLGNSMGGHSSVAFTLKWPERVGKL 135
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 27.3 bits (60), Expect = 4.1
Identities = 10/78 (12%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 3 RPIA-YFHKGDYNVIVVDYGSLVVVPCIDQISWSPSFAGACIAQLAYYLSQHPRGVPPEK 61
+A Y ++V D V + ++ + + + ++L +
Sbjct: 52 AGLAEYLSTNGFHVFRYDSLHHVGLSSGSIDEFTMTTGKNSLCTVYHWLQTKG----TQN 107
Query: 62 LHLLGWSIGAHIAGLTAN 79
+ L+ S+ A +A +
Sbjct: 108 IGLIAASLSARVAYEVIS 125
>1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP:
c.69.1.14 PDB: 1aur_A*
Length = 218
Score = 27.0 bits (60), Expect = 4.3
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 55 RGVPPEKLHLLGWSIGAHIAGLTANYVEKGRKLGRITGL 93
G+ ++ L G+S G + ++ LG + L
Sbjct: 101 TGIDASRIFLAGFSQGGAVV-FHTAFINWQGPLGGVIAL 138
>1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus
subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A*
2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A
3qmm_A
Length = 181
Score = 27.0 bits (60), Expect = 4.4
Identities = 7/52 (13%), Positives = 20/52 (38%)
Query: 44 AQLAYYLSQHPRGVPPEKLHLLGWSIGAHIAGLTANYVEKGRKLGRITGLDP 95
L+ ++ + +K+ ++ S+G ++ G K+ + L
Sbjct: 53 PVLSRFVQKVLDETGAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGG 104
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene,
isopropylbenzene, META-cleavage compound hydrolase;
1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB:
1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A
2d0d_A
Length = 282
Score = 27.3 bits (61), Expect = 4.5
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 60 EKLHLLGWSIGAHIA-GLTANYVEKGRKL 87
EK H++G + G +A Y E+ ++
Sbjct: 95 EKAHIVGNAFGGGLAIATALRYSERVDRM 123
>2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide
synthesis, alpha/beta- hydrolases, catalytic triade,
hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A*
Length = 244
Score = 27.1 bits (60), Expect = 4.5
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 8/32 (25%)
Query: 47 AYYLSQ----HPRGVPPEKLHLLGWSIGAHIA 74
Y+S+ P G P LLG+S G ++A
Sbjct: 64 EQYVSRITEIQPEG--P--YVLLGYSAGGNLA 91
>2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond
hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia
xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A*
3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A
Length = 286
Score = 26.9 bits (60), Expect = 5.7
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 16/91 (17%)
Query: 2 SRPIAYFHKGDYNVIVVD---YG-SLVVVPCIDQISWSPSFAGACIAQLAYYLSQHPRGV 57
R + F Y VI+ D + S VV + + + L +
Sbjct: 53 YRNVGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDAL---------DI 103
Query: 58 PPEKLHLLGWSIGAHIA-GLTANYVEKGRKL 87
++ HL+G ++G A Y ++ KL
Sbjct: 104 --DRAHLVGNAMGGATALNFALEYPDRIGKL 132
>3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase,
thioesterase, norsolorinic acid, P polyketide,
acyltransferase; 1.70A {Aspergillus parasiticus}
Length = 265
Score = 26.7 bits (59), Expect = 6.3
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 9/37 (24%)
Query: 43 IAQLA-YYLSQ----HPRGVPPEKLHLLGWSIGAHIA 74
+ + ++ PRG P HL GWS G A
Sbjct: 67 HGAMIESFCNEIRRRQPRG--P--YHLGGWSSGGAFA 99
>3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family,
hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB:
3cn7_A*
Length = 226
Score = 26.6 bits (59), Expect = 6.5
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 51 SQHPRGVPPEKLHLLGWSIGAHIAGLTANYVEKGRKLGRITGL 93
Q +G+ E++ L G+S G + TA + + LG + L
Sbjct: 107 EQRAKGIAAERIILAGFSQGGAVVLHTA-FRRYAQPLGGVLAL 148
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad,
rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A
3dyi_A 3dyv_A 3e1g_A
Length = 251
Score = 26.4 bits (58), Expect = 7.7
Identities = 12/80 (15%), Positives = 30/80 (37%), Gaps = 11/80 (13%)
Query: 3 RPIA-YFHKGDYNVIVVD---YGSLVVVPCIDQISWSPSFAGACIAQLAYYLSQHPRGVP 58
+A + Y V V +G++ + + + + + A +A+ +++
Sbjct: 39 NFMARALQRSGYGVYVPLFSGHGTVEPLDILTKGNPD-IWWAESSAAVAHMTAKY----- 92
Query: 59 PEKLHLLGWSIGAHIAGLTA 78
K+ + G S+G A
Sbjct: 93 -AKVFVFGLSLGGIFAMKAL 111
>3bxp_A Putative lipase/esterase; putative carboxylesterase, structural
genomics, joint center structural genomics, JCSG; HET:
EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A*
Length = 277
Score = 26.4 bits (58), Expect = 8.0
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 15/84 (17%)
Query: 3 RPIA-YFHKGDYNVIVVDYGSLVVVPCIDQISWSPSFAGACIAQLAY---YLSQHPR--G 56
PIA + +V++Y L+V S + QL +++
Sbjct: 55 APIATRMMAAGMHTVVLNY-QLIVGD--------QSVYPWALQQLGATIDWITTQASAHH 105
Query: 57 VPPEKLHLLGWSIGAHIAGLTANY 80
V +++ L G+S G H+
Sbjct: 106 VDCQRIILAGFSAGGHVVATYNGV 129
>1j1i_A META cleavage compound hydrolase; carbazole degradation, META
cleavage product hydrolase, histidine tagged protein,
alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP:
c.69.1.10
Length = 296
Score = 26.2 bits (58), Expect = 8.6
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 60 EKLHLLGWSIGAHIA-GLTANYVEKGRKL 87
K+ ++G S+G G++ + E L
Sbjct: 106 GKVSIVGNSMGGATGLGVSVLHSELVNAL 134
>3hc7_A Gene 12 protein, GP12; alpha/beta sandwich, cell adhesion; 2.00A
{Mycobacterium phage D29}
Length = 254
Score = 26.2 bits (57), Expect = 8.6
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 34 WSPSFAGACIAQLAYYLSQHPRGVPPEKLHLLGWSIGAHIAG 75
PS +A+L + P + G+S GA + G
Sbjct: 49 MWPSVE-KGVAELILQIELKLDADPYADFAMAGYSQGAIVVG 89
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2,
structural genomics, protein structure initiative,
midwest for structural genomics; 2.00A {Oenococcus oeni}
Length = 272
Score = 26.2 bits (58), Expect = 9.1
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 17/82 (20%)
Query: 11 GDYNVIVVD---YG-SLVVVPCIDQISWSPSFAGACIAQLAYYLSQHPRGVPPEKLHLLG 66
G Y I +D G S + P S S + I + + G + L G
Sbjct: 48 GQYQRIYLDLPGMGNSDPISP-----STSDNVLETLIEAIEEII-----GA--RRFILYG 95
Query: 67 WSIGAHIA-GLTANYVEKGRKL 87
S G ++A + + ++ +
Sbjct: 96 HSYGGYLAQAIAFHLKDQTLGV 117
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.445
Gapped
Lambda K H
0.267 0.0601 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,726,457
Number of extensions: 221569
Number of successful extensions: 637
Number of sequences better than 10.0: 1
Number of HSP's gapped: 615
Number of HSP's successfully gapped: 59
Length of query: 229
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 139
Effective length of database: 4,188,903
Effective search space: 582257517
Effective search space used: 582257517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.6 bits)