BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15134
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RI5|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RIA|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIF|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate
Length = 347
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 122/251 (48%), Gaps = 62/251 (24%)
Query: 4 EYRILDVNWLQNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLY------MSNCTA 57
++ IL V IW PD FF N K+ H + PN + +++D T+LY + +C
Sbjct: 75 DFVILTVG--HQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLYSVRISLVLSCPM 132
Query: 58 FIQIF------------------------------VKIKYSI----------------CM 71
++Q + +++K + C
Sbjct: 133 YLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSSLPSFQLTNTSTTYCT 192
Query: 72 NAVLLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTS 131
+ G ++C+ L+R ++L YIPS ++V++SW+SFW AIPARVTLGVT+
Sbjct: 193 SVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTT 252
Query: 132 LLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPIATKAMKGY 191
LLT+ Q+ LPPVSY+KAID+W+ +C F+F +L+EFA+VN+ A G
Sbjct: 253 LLTMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHI-------ANAGT 305
Query: 192 SE-EDLRNNVD 201
+E D+ VD
Sbjct: 306 TEWNDISKRVD 316
>pdb|1VRY|A Chain A, Second And Third Transmembrane Domains Of The Alpha-1
Subunit Of Human Glycine Receptor
Length = 76
Score = 77.0 bits (188), Expect = 9e-15, Method: Composition-based stats.
Identities = 35/57 (61%), Positives = 48/57 (84%)
Query: 121 IPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVN 177
+PARV LG+T++LTL TQ++ S+ SLP VSYVKAIDIW++ C +FVF +L+E+A VN
Sbjct: 1 LPARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALLEYAAVN 57
>pdb|2YKS|A Chain A, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|B Chain B, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|C Chain C, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|D Chain D, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|E Chain E, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|F Chain F, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|G Chain G, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|H Chain H, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|I Chain I, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|J Chain J, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
Length = 321
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 79 FTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQ 138
F+ I V + R Y+L+ +P LI+ SW FW+ E+ R+ T +LT+
Sbjct: 187 FSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMLTVVAY 244
Query: 139 NTQSQQSLPPVSYVKAID--IWMSSCSVFVFLSLMEFA 174
+ LP + Y ID I S+F + L+ FA
Sbjct: 245 AAYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFA 282
>pdb|3UQ4|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
Length = 324
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 79 FTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQ 138
F+ I V + R Y+L+ +P LI+ SW FW+ E+ R+ T +LT+
Sbjct: 190 FSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMLTVVAY 247
Query: 139 NTQSQQSLPPVSYVKAID--IWMSSCSVFVFLSLMEFA 174
+ LP + Y ID I S+F + L+ FA
Sbjct: 248 ALYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFA 285
>pdb|4A97|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A98|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|2YOE|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|3ZKR|A Chain A, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|B Chain B, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|C Chain C, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|D Chain D, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|E Chain E, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|F Chain F, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|G Chain G, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|H Chain H, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|I Chain I, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|J Chain J, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
Length = 307
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 79 FTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQ 138
F+ I V + R Y+L+ +P LI+ SW FW+ E+ R+ T +LT+
Sbjct: 178 FSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMLTVVAY 235
Query: 139 NTQSQQSLPPVSYVKAID--IWMSSCSVFVFLSLMEFA 174
+ LP + Y ID I S+F + L+ FA
Sbjct: 236 AFYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFA 273
>pdb|2VL0|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
Length = 321
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 79 FTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQ 138
F+ I V + R Y+L+ +P LI+ SW FW+ E+ R+ T +LT+
Sbjct: 187 FSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMLTVVAY 244
Query: 139 NTQSQQSLPPVSYVKAID--IWMSSCSVFVFLSLMEFA 174
+ LP + Y ID I S+F + L+ FA
Sbjct: 245 AFYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFA 282
>pdb|3RQU|A Chain A, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|B Chain B, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|C Chain C, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|D Chain D, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|E Chain E, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|F Chain F, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|G Chain G, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|H Chain H, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|I Chain I, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|J Chain J, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQW|A Chain A, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|B Chain B, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|C Chain C, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|D Chain D, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|E Chain E, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|F Chain F, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|G Chain G, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|H Chain H, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|I Chain I, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|J Chain J, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|2YN6|A Chain A, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|B Chain B, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|C Chain C, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|D Chain D, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|E Chain E, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
Length = 322
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 79 FTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQ 138
F+ I V + R Y+L+ +P LI+ SW FW+ E+ R+ T +LT+
Sbjct: 188 FSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMLTVVAY 245
Query: 139 NTQSQQSLPPVSYVKAID--IWMSSCSVFVFLSLMEFA 174
+ LP + Y ID I S+F + L+ FA
Sbjct: 246 AFYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFA 283
>pdb|1MOT|A Chain A, Nmr Structure Of Extended Second Transmembrane Domain Of
Glycine Receptor Alpha1 Subunit In Sds Micelles
Length = 28
Score = 37.0 bits (84), Expect = 0.010, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 122 PARVTLGVTSLLTLATQNTQSQQSLP 147
PARV LG+T++LT+ TQ++ S+ SLP
Sbjct: 2 PARVGLGITTVLTMTTQSSGSRASLP 27
>pdb|3UQ5|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
Length = 324
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 79 FTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQ 138
F+ I V + R Y+L+ +P LI+ SW FW+ E+ R+ T + T+
Sbjct: 190 FSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMATVVAY 247
Query: 139 NTQSQQSLPPVSYVKAID--IWMSSCSVFVFLSLMEFA 174
+ LP + Y ID I S+F + L+ FA
Sbjct: 248 ALYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFA 285
>pdb|3UQ7|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
Length = 324
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 79 FTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQ 138
F+ I V + R Y+L+ +P LI+ SW FW+ E+ R+ T + T+
Sbjct: 190 FSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMSTVVAY 247
Query: 139 NTQSQQSLPPVSYVKAID--IWMSSCSVFVFLSLMEFA 174
+ LP + Y ID I S+F + L+ FA
Sbjct: 248 ALYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFA 285
>pdb|3TLT|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
Length = 321
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 87 NLRRRLGYHL-----FHTYIPSAL-----IVVMSWISFWIKPEAIPARVTLGVTSLLTLA 136
L +L Y L + +YIP+ + I+ +SW +FW + A VTL V++L+
Sbjct: 183 RLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAFI 240
Query: 137 TQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAV 175
N + +LP Y+ + +F F++++E V
Sbjct: 241 AFNILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTV 279
>pdb|3EI0|A Chain A, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|B Chain B, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|C Chain C, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|D Chain D, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|E Chain E, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
Length = 317
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 87 NLRRRLGYHL-----FHTYIPSAL-----IVVMSWISFWIKPEAIPARVTLGVTSLLTLA 136
L +L Y L + +YIP+ + I+ +SW +FW A A VTL V++L+
Sbjct: 179 RLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFWSTSYA--ANVTLVVSTLIAHI 236
Query: 137 TQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAV 175
N + +LP Y+ + +F F++++E V
Sbjct: 237 AFNILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTV 275
>pdb|3P4W|A Chain A, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|B Chain B, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|C Chain C, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|D Chain D, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|E Chain E, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|A Chain A, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|B Chain B, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|C Chain C, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|D Chain D, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|E Chain E, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
Length = 318
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 87 NLRRRLGYHL-----FHTYIPSAL-----IVVMSWISFWIKPEAIPARVTLGVTSLLTLA 136
L +L Y L + +YIP+ + I+ +SW +FW + A VTL V++L+
Sbjct: 179 RLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHI 236
Query: 137 TQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAV 175
N + +LP Y+ + +F F++++E V
Sbjct: 237 AFNILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTV 275
>pdb|3EHZ|A Chain A, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|B Chain B, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|C Chain C, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|D Chain D, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|E Chain E, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|2XQ3|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ4|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ5|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ6|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ7|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ8|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQA|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|4F8H|A Chain A, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|B Chain B, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|C Chain C, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|D Chain D, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|E Chain E, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
Length = 317
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 87 NLRRRLGYHL-----FHTYIPSAL-----IVVMSWISFWIKPEAIPARVTLGVTSLLTLA 136
L +L Y L + +YIP+ + I+ +SW +FW + A VTL V++L+
Sbjct: 179 RLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHI 236
Query: 137 TQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAV 175
N + +LP Y+ + +F F++++E V
Sbjct: 237 AFNILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTV 275
>pdb|3EAM|A Chain A, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|B Chain B, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|C Chain C, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|D Chain D, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|E Chain E, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|4HFI|A Chain A, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|B Chain B, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|C Chain C, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|D Chain D, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|E Chain E, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4IL4|A Chain A, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|B Chain B, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|C Chain C, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|D Chain D, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|E Chain E, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
Length = 317
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 87 NLRRRLGYHL-----FHTYIPSAL-----IVVMSWISFWIKPEAIPARVTLGVTSLLTLA 136
L +L Y L + +YIP+ + I+ +SW +FW + A VTL V++L+
Sbjct: 179 RLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHI 236
Query: 137 TQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAV 175
N + +LP Y+ + +F F++++E V
Sbjct: 237 AFNILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTV 275
>pdb|2XQ9|A Chain A, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|B Chain B, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|C Chain C, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|D Chain D, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|E Chain E, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
Length = 317
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 87 NLRRRLGYHL-----FHTYIPSAL-----IVVMSWISFWIKPEAIPARVTLGVTSLLTLA 136
L +L Y L + +YIP+ + I+ +SW +FW + A VTL V++L+
Sbjct: 179 RLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYDANVTLVVSTLIAHI 236
Query: 137 TQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAV 175
N + +LP Y+ + +F F++++E V
Sbjct: 237 AFNILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTV 275
>pdb|4ILC|A Chain A, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|B Chain B, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|C Chain C, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|D Chain D, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|E Chain E, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
Length = 320
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 87 NLRRRLGYHL-----FHTYIPSAL-----IVVMSWISFWIKPEAIPARVTLGVTSLLTLA 136
L +L Y L + +YIP+ + I+ +SW +FW + A VTL V++L+
Sbjct: 183 RLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHI 240
Query: 137 TQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAV 175
N + +LP Y+ + +F F++++E V
Sbjct: 241 AFNILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTV 279
>pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp
Length = 498
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 7 ILDVNWLQNIWRPDCFFKNAKKVTFHEMS---IPNHYLWLYHDKTLLYMSNC 55
+ D + N++ PDC F + KKV +EM N L +H + YM C
Sbjct: 272 LADEVYQDNVYSPDCRFHSFKKV-LYEMGPEYSSNVELASFHSTSKGYMGEC 322
>pdb|3TLW|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3UU4|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UUB|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|F Chain F, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|G Chain G, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|H Chain H, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|I Chain I, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|J Chain J, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
Length = 321
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 87 NLRRRLGYHL-----FHTYIPSAL-----IVVMSWISFWIKPEAIPARVTLGVTSLLTLA 136
L +L Y L + +YIP+ + I+ +SW +FW + A VTL V++L+
Sbjct: 183 RLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHI 240
Query: 137 TQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAV 175
N + LP Y+ + +F F++++E V
Sbjct: 241 AFNILVETCLPKTPYMTYTGAIIFMIYLFYFVAVIEVTV 279
>pdb|3LSV|A Chain A, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|B Chain B, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|C Chain C, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|D Chain D, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|E Chain E, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
Length = 317
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 87 NLRRRLGYHL-----FHTYIPSAL-----IVVMSWISFWIKPEAIPARVTLGVTSLLTLA 136
L +L Y L + +YIP+ + I+ +SW +FW + A VTL V++L+
Sbjct: 179 RLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHI 236
Query: 137 TQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAV 175
N + +LP Y+ + +F F++++E V
Sbjct: 237 FFNILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTV 275
>pdb|3TLU|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU8|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
Length = 321
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 87 NLRRRLGYHL-----FHTYIPSAL-----IVVMSWISFWIKPEAIPARVTLGVTSLLTLA 136
L +L Y L + +YIP+ + I+ +SW +FW + A VTL V++L+
Sbjct: 183 RLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHI 240
Query: 137 TQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAV 175
N + +LP Y+ + +F F++++E V
Sbjct: 241 AFNILVETNLPCTPYMTYTGAIIFMIYLFYFVAVIEVTV 279
>pdb|4IL9|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|B Chain B, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|C Chain C, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|D Chain D, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|E Chain E, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4ILA|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|B Chain B, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|C Chain C, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|D Chain D, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|E Chain E, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILB|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|B Chain B, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|C Chain C, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|D Chain D, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|E Chain E, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
Length = 320
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 87 NLRRRLGYHL-----FHTYIPSAL-----IVVMSWISFWIKPEAIPARVTLGVTSLLTLA 136
L +L Y L + +YIP+ + I+ +SW +FW + A VTL V++L+
Sbjct: 183 RLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHI 240
Query: 137 TQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAV 175
N + +LP Y+ + +F F++++E V
Sbjct: 241 FFNILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTV 279
>pdb|3UU3|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU5|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
Length = 321
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 87 NLRRRLGYHL-----FHTYIPSAL-----IVVMSWISFWIKPEAIPARVTLGVTSLLTLA 136
L +L Y L + +YIP+ + I+ +SW +FW + A VTL V++L+
Sbjct: 183 RLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHI 240
Query: 137 TQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAV 175
N + +LP Y+ + +F F++++E V
Sbjct: 241 AFNILVECNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTV 279
>pdb|3TLS|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
Length = 321
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 87 NLRRRLGYHL-----FHTYIPSAL-----IVVMSWISFWIKPEAIPARVTLGVTSLLTLA 136
L +L Y L + +YIP+ + I+ +SW +FW + A VTL V++L+
Sbjct: 183 RLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHI 240
Query: 137 TQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAV 175
N +LP Y+ + +F F++++E V
Sbjct: 241 AFNILVPTNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTV 279
>pdb|3TLV|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3UU6|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
Length = 321
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 87 NLRRRLGYHL-----FHTYIPSAL-----IVVMSWISFWIKPEAIPARVTLGVTSLLTLA 136
L +L Y L + +YIP+ + I+ +SW +FW + A VTL V++L+
Sbjct: 183 RLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHI 240
Query: 137 TQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAV 175
N + + P Y+ + +F F++++E V
Sbjct: 241 AFNILVETNCPKTPYMTYTGAIIFMIYLFYFVAVIEVTV 279
>pdb|4AOE|A Chain A, Biomphalaria Glabrata Acetylcholine-Binding Protein Type
2 (Bgachbp2)
pdb|4AOE|B Chain B, Biomphalaria Glabrata Acetylcholine-Binding Protein Type
2 (Bgachbp2)
pdb|4AOE|C Chain C, Biomphalaria Glabrata Acetylcholine-Binding Protein Type
2 (Bgachbp2)
pdb|4AOE|D Chain D, Biomphalaria Glabrata Acetylcholine-Binding Protein Type
2 (Bgachbp2)
pdb|4AOE|E Chain E, Biomphalaria Glabrata Acetylcholine-Binding Protein Type
2 (Bgachbp2)
Length = 205
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 12 WLQNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYH 45
WL W+ + + TF+E+++P+ Y+WL H
Sbjct: 55 WLVISWKDRSLSWSNECTTFNELTLPSKYIWLPH 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.138 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,297,558
Number of Sequences: 62578
Number of extensions: 262579
Number of successful extensions: 760
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 734
Number of HSP's gapped (non-prelim): 30
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)