Query psy15134
Match_columns 259
No_of_seqs 212 out of 1370
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 21:27:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15134.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15134hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3643|consensus 100.0 5E-68 1.1E-72 482.3 15.2 181 2-182 101-332 (459)
2 KOG3644|consensus 100.0 1E-60 2.2E-65 448.4 12.7 174 9-182 116-341 (457)
3 KOG3642|consensus 100.0 1.5E-58 3.3E-63 422.5 13.0 179 3-181 110-339 (466)
4 TIGR00860 LIC Cation transport 100.0 2.1E-43 4.5E-48 335.1 14.3 170 14-183 109-331 (459)
5 KOG3645|consensus 100.0 4.4E-29 9.5E-34 236.5 10.2 180 3-184 88-332 (449)
6 KOG3646|consensus 100.0 2.6E-29 5.6E-34 230.3 6.0 167 14-183 106-326 (486)
7 PF02932 Neur_chan_memb: Neuro 99.9 1.8E-29 3.9E-34 211.0 -3.7 82 99-180 1-82 (237)
8 PF02931 Neur_chan_LBD: Neurot 99.2 4.3E-11 9.4E-16 102.5 7.9 59 14-73 80-143 (217)
9 PF09125 COX2-transmemb: Cytoc 37.7 53 0.0011 20.1 2.9 19 159-177 19-37 (38)
10 PF11455 DUF3018: Protein of 27.6 22 0.00048 24.7 0.2 8 14-21 20-27 (65)
11 PF11211 DUF2997: Protein of u 22.9 38 0.00083 22.0 0.7 21 41-61 3-23 (48)
12 PF11395 DUF2873: Protein of u 21.0 1.5E+02 0.0034 18.2 2.9 22 151-172 3-24 (43)
13 PF05568 ASFV_J13L: African sw 20.7 1.4E+02 0.0031 24.2 3.6 36 154-189 26-61 (189)
No 1
>KOG3643|consensus
Probab=100.00 E-value=5e-68 Score=482.25 Aligned_cols=181 Identities=43% Similarity=0.773 Sum_probs=174.1
Q ss_pred CCceeeeCccccCCcccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEEEEe-----eeeeeeee---
Q psy15134 2 SEEYRILDVNWLQNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKI-----KYSICMNA--- 73 (259)
Q Consensus 2 ~~~~~~l~~~~~~~IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m~l-----d~q~c~~~--- 73 (259)
..+-++||.+++++||+||+||.|+|++.+|++|.+|+++|+++||+|+|+.|++.+++|+||| |.|.|+++
T Consensus 101 ~~~slTl~~~~~~~LWvPDTff~N~KkSf~H~~T~~N~~lRl~~dGtVlys~RlT~Ta~C~MDL~~fPmD~Q~C~LeiES 180 (459)
T KOG3643|consen 101 NIDSLTLDVRYVDKLWVPDTFFPNSKKSFFHDVTTHNSLLRLHPDGTVLYSIRLTVTAACPMDLKLFPMDSQNCKLEIES 180 (459)
T ss_pred CCceEEEchhhhhccccCceecccCcccccceeeecceEEEEcCCCeEEEEEEEEEEEecccccccCCCcccceeEEEEe
Confidence 3567899999999999999999999999999999999999999999999999999999999999 89999763
Q ss_pred -------------------------------------------ecCCceeeeeEEEeeecccceeEEeeehhhHHHhhhe
Q psy15134 74 -------------------------------------------VLLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMS 110 (259)
Q Consensus 74 -------------------------------------------~~~g~ys~l~~~~~l~R~~~yy~~~~~iP~~liv~ls 110 (259)
+.+|+|++|.+.|.++|+.|||++|+|+|++|+|++|
T Consensus 181 YGYt~~DI~y~W~~g~~av~~~e~i~LpqFti~~~~~~s~~~~~sTG~Y~RL~l~F~l~Rnigf~ilQ~y~PS~LiVilS 260 (459)
T KOG3643|consen 181 YGYTTDDIEYYWSKGDNAVKGDEKIELPQFTITEYHVTSRLVSFSTGNYSRLSLSFQLRRNIGFYILQTYIPSTLIVILS 260 (459)
T ss_pred cccccccEEEEEcCCCccccceeeeeccceEEEEEEEEEEEEEEccccceeEEEEEEEEeeccEEEEeeecchhhhhHHh
Confidence 3689999999999999999999999999999999999
Q ss_pred eeEeecCCCCccchhccceeeeeeheeehhhhcccCCCCcccchhhhhhhHHHHHHHHHHHHHhhhhhccCh
Q psy15134 111 WISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYMGP 182 (259)
Q Consensus 111 ~~~Fwl~~~~~~~Rv~lgit~lLt~~~~~~~~~~~lP~~syi~~id~~~~~~~~~vf~slle~~~V~~~~~~ 182 (259)
|+||||+.++.|||+++|+|++|||++++++.+++||++||+||||+|+++|++|||+||+|||+|+|...+
T Consensus 261 WVSFWin~~a~pARv~lGITTVLTMTTl~t~~n~slPrvSYVKAiDiYL~vCFvfVF~sLLEYA~V~Y~~~~ 332 (459)
T KOG3643|consen 261 WVSFWINRDASPARVALGITTVLTMTTLMTSTNESLPRVSYVKAIDVYLGVCFVFVFLSLLEYAAVNYMFKR 332 (459)
T ss_pred HhHhhhccccchhheeeceehHHhHHHHHhhhhccCCCccceeeehhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998753
No 2
>KOG3644|consensus
Probab=100.00 E-value=1e-60 Score=448.39 Aligned_cols=174 Identities=45% Similarity=0.822 Sum_probs=165.1
Q ss_pred CccccCC--cccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEEEEe-----eeeeeeee--------
Q psy15134 9 DVNWLQN--IWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKI-----KYSICMNA-------- 73 (259)
Q Consensus 9 ~~~~~~~--IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m~l-----d~q~c~~~-------- 73 (259)
+..+..+ ||.||++|.|+|.+.+|+++.+|.+++|+|||+|+++.|++++++|+||+ |.|.|.+.
T Consensus 116 ~~~l~~~~~iW~Pd~~F~NsK~a~~H~~~~~N~ll~I~pnGtV~~~~Ri~l~~~C~m~L~~fP~D~Q~C~l~~eSy~Yn~ 195 (457)
T KOG3644|consen 116 KLNLSLKQKIWTPDTFFANSKSAEFHKSTKPNVLLMIFPNGTVWYSYRISLTLPCNMDLSKFPMDSQECKLQLESYAYNT 195 (457)
T ss_pred ccccccCCceecCceeeecccceeeecCCCCceEEEEecCCeEEEEEEEEEeeceeeehhhCCCccceeeEEEEEecccc
Confidence 4444445 99999999999999999999999999999999999999999999999999 88888653
Q ss_pred -------------------------------------ecCCceeeeeEEEeeecccceeEEeeehhhHHHhhheeeEeec
Q psy15134 74 -------------------------------------VLLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWI 116 (259)
Q Consensus 74 -------------------------------------~~~g~ys~l~~~~~l~R~~~yy~~~~~iP~~liv~ls~~~Fwl 116 (259)
+.+|.|+|++++|+++|+.|||++|.|+|+.++|++||++|||
T Consensus 196 ~~v~~~W~~~~pv~~~~~i~LPdf~l~~~~~~~~~~~y~~G~~scL~v~~~f~R~~g~yllQ~YiPT~l~ViiSWvSFWL 275 (457)
T KOG3644|consen 196 DDVRLEWKEWNPVQVKKDIKLPDFSLPSFSTEKCTGSYTTGVYSCLRVTFTFKRRYGYYLLQTYIPTLLIVIISWVSFWL 275 (457)
T ss_pred ceEEEEecCCCCcccccCccCCceeccceeeccccccccCcceEEEEEEEEEEEeehhhhhHHHhhhHhhhhhhhhheec
Confidence 3578999999999999999999999999999999999999999
Q ss_pred CCCCccchhccceeeeeeheeehhhhcccCCCCcccchhhhhhhHHHHHHHHHHHHHhhhhhccCh
Q psy15134 117 KPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYMGP 182 (259)
Q Consensus 117 ~~~~~~~Rv~lgit~lLt~~~~~~~~~~~lP~~syi~~id~~~~~~~~~vf~slle~~~V~~~~~~ 182 (259)
+++|+|||++||+|+||+|+++...++.+||++||+||||+|+++|++|||+||+|+|+|+++.++
T Consensus 276 d~~A~PARv~LgvtsLLtLttq~~~i~~~LP~VSYvKAIDVWm~~C~~FIF~sLlE~A~V~~~~~~ 341 (457)
T KOG3644|consen 276 DPKAVPARVTLGVTSLLTLTTQSGGIRRNLPKVSYVKAIDVWMGVCMTFIFGSLLELAVVNYVGRR 341 (457)
T ss_pred CCCcccceEEehHHHHHHHHHHhcchhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999875
No 3
>KOG3642|consensus
Probab=100.00 E-value=1.5e-58 Score=422.54 Aligned_cols=179 Identities=40% Similarity=0.741 Sum_probs=170.5
Q ss_pred CceeeeCccccCCcccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEEEEe-----eeeeeeeee---
Q psy15134 3 EEYRILDVNWLQNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKI-----KYSICMNAV--- 74 (259)
Q Consensus 3 ~~~~~l~~~~~~~IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m~l-----d~q~c~~~~--- 74 (259)
.|.+.|+..|+++||+||++|.|+|++..|.++++|+++||..||+|+|+.|++..+.|||++ |.|.|.+++
T Consensus 110 ~~~L~Ln~~m~~kiW~PDTfF~NgkkS~~H~iT~pN~l~Ri~~dG~vlyt~RlTi~A~C~m~l~~fPMD~haCpl~fgSy 189 (466)
T KOG3642|consen 110 QEALPLNSLMLSKIWIPDTFFRNGKKSYAHNITTPNKLVRIYIDGTVLYTMRLTIPAECPMHLARFPMDSHACPLKFGSY 189 (466)
T ss_pred chhhccchhhhcCcccCCcccccCcccceeeccCCCceEEEeECCcceEEEEEeecccCcchhhcCCCCcccCcceeccc
Confidence 455788999999999999999999999999999999999999999999999999999999998 777776532
Q ss_pred -------------------------------------------cCCceeeeeEEEeeecccceeEEeeehhhHHHhhhee
Q psy15134 75 -------------------------------------------LLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSW 111 (259)
Q Consensus 75 -------------------------------------------~~g~ys~l~~~~~l~R~~~yy~~~~~iP~~liv~ls~ 111 (259)
.+|+|+.+++.|+|+|+.|||++|+|+||+|.|+|||
T Consensus 190 ~Y~~~evvY~W~~~~VeV~~~~~~~L~Qf~l~g~~~~te~i~t~~gey~vmtv~F~L~R~~GYf~iQ~YlPC~ltViLSw 269 (466)
T KOG3642|consen 190 AYPGSEVVYKWKKRSVEVNETDSWSLDQFDLLGVSVGTEDIKTSSGEYSVMTVYFHLSRRQGYFIIQIYLPCILTVVLSW 269 (466)
T ss_pred CcCCCCEEEEEecccEEEcCCCCccccceeeecccccccceEecCCCEEEEEEEEeccceeeEEEEeeccceeeeeeeee
Confidence 5789999999999999999999999999999999999
Q ss_pred eEeecCCCCccchhccceeeeeeheeehhhhcccCCCCcccchhhhhhhHHHHHHHHHHHHHhhhhhccC
Q psy15134 112 ISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYMG 181 (259)
Q Consensus 112 ~~Fwl~~~~~~~Rv~lgit~lLt~~~~~~~~~~~lP~~syi~~id~~~~~~~~~vf~slle~~~V~~~~~ 181 (259)
++||++.+++|||+++|||++|+|+++...++.++||+||.||+|+|.++|++|+|+|++|+|+|||+..
T Consensus 270 VSFWinrEs~paRt~lGITtVLTMTtLs~~aR~slPKVsy~TAmD~fIavCf~FvFsaliEfa~vNYft~ 339 (466)
T KOG3642|consen 270 VSFWINREATPARTSLGITTVLTMTTLSTSARKSLPKVSYATALDVFIAVCFIFVFAALVEFAVVNYFTL 339 (466)
T ss_pred eehhccccccccceeeeeeeeeeeeeeeehhccCCCccccchhHHHHHHHHHHHHHHHHHHHHheeeeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999873
No 4
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=100.00 E-value=2.1e-43 Score=335.06 Aligned_cols=170 Identities=40% Similarity=0.718 Sum_probs=158.6
Q ss_pred CCcccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEEEEe-----eeeeeeeee--------------
Q psy15134 14 QNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKI-----KYSICMNAV-------------- 74 (259)
Q Consensus 14 ~~IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m~l-----d~q~c~~~~-------------- 74 (259)
++||+||++++|++++.+|.....|..+++++||+|.|..|.+.+++|+||+ |.|+|.+++
T Consensus 109 ~~IW~PDi~l~N~~~~~~~~~~~~~~~v~~~~~G~V~~~~~~~~~~~C~~d~~~FPfD~Q~C~l~fgSw~y~~~~i~l~~ 188 (459)
T TIGR00860 109 DSIWVPDIFFYNEKDARFHGITMTNVLVRIHPNGSVLYSPRITLTLACPMDLRNFPFDVQNCSLKFESWGYTTNDIKLEW 188 (459)
T ss_pred cccccCcEEeecCccccccccccCceEEEEcCCCcEEEecCceEEecccceeccCCCCCccccEEEhhhccccceEEEEE
Confidence 7999999999999998888877778888989999999999999999999998 889887532
Q ss_pred ----------------------------------cCCceeeeeEEEeeecccceeEEeeehhhHHHhhheeeEeecCCCC
Q psy15134 75 ----------------------------------LLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEA 120 (259)
Q Consensus 75 ----------------------------------~~g~ys~l~~~~~l~R~~~yy~~~~~iP~~liv~ls~~~Fwl~~~~ 120 (259)
..|.|+++.++++++|+++||++++++||+++++++|++||+|+++
T Consensus 189 ~~~~~v~~~~~~~~~~~eW~l~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~Lp~~a 268 (459)
T TIGR00860 189 KEQGAVQVDDSLFISLPEFELLGVYGTRYCTSETNTGEYPCLTFSFVLRRRPLYYLLQLYIPSILIVILSWVSFWLPADA 268 (459)
T ss_pred CCCCceEechhhccccCceEEEeeeeeeeEecccCCCCcCeEEEEEEEEEcccceeeeehHHHHHHHHHhheeEecCCCC
Confidence 1245789999999999999999999999999999999999999997
Q ss_pred ccchhccceeeeeeheeehhhhcccCCCCcccchhhhhhhHHHHHHHHHHHHHhhhhhccChh
Q psy15134 121 IPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPI 183 (259)
Q Consensus 121 ~~~Rv~lgit~lLt~~~~~~~~~~~lP~~syi~~id~~~~~~~~~vf~slle~~~V~~~~~~~ 183 (259)
.++|+++|+|++|++++++..+++.||++||+|+||+|+++|++++++|++|+++|++++++.
T Consensus 269 ~~eRi~L~it~lLs~~vf~~~v~~~lP~~S~vpli~~y~~~~~~~v~~sli~tv~V~~~~~~~ 331 (459)
T TIGR00860 269 SGARVSLGITTLLTMTTFSSGVRESLPAVSYVKAIDVYFAVCMAFVFLALLETAFVNYVHHKD 331 (459)
T ss_pred CCCcEEEEEEHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHHHHHHHhheeEEccC
Confidence 799999999999999999999999999999999999999999999999999999999998764
No 5
>KOG3645|consensus
Probab=99.96 E-value=4.4e-29 Score=236.52 Aligned_cols=180 Identities=21% Similarity=0.290 Sum_probs=159.7
Q ss_pred CceeeeCcccc----------CCcccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEEEEe-----ee
Q psy15134 3 EEYRILDVNWL----------QNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKI-----KY 67 (259)
Q Consensus 3 ~~~~~l~~~~~----------~~IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m~l-----d~ 67 (259)
|+++.+|++.. ++||+||+.++|+.+++....... .+.+++||+|.|..++..+++|++|+ |.
T Consensus 88 D~~L~Wnp~~~~~I~~i~vp~~~IW~Pdi~l~N~~~~~~~~~~~~--~v~v~~~G~V~~~~p~i~~s~C~idv~~FPfD~ 165 (449)
T KOG3645|consen 88 DERLSWDPSDYGGITKIRVPSSKIWLPDIVLYNNADGDFEVEDLT--NVLVTYTGEVLWYPPAIYKSSCPIDVTYFPFDV 165 (449)
T ss_pred ccCcccChHHcCCceEEEecHHHcCcCcEEEEecccccccccccc--eEEEEECCEEEEEcceEEEeecccccccCCCcc
Confidence 66777777432 889999999999877776654343 48999999999999999999999998 88
Q ss_pred eeeeeeec-------------------------------------------------CCceeeeeEEEeeecccceeEEe
Q psy15134 68 SICMNAVL-------------------------------------------------LGNFTCIAVVFNLRRRLGYHLFH 98 (259)
Q Consensus 68 q~c~~~~~-------------------------------------------------~g~ys~l~~~~~l~R~~~yy~~~ 98 (259)
|+|.+.+. .+.|+.+++.+++||++.||+++
T Consensus 166 Q~C~i~f~sw~~~~~~i~~~~~~~~~~~~~~~~~~~n~eW~l~~~~~~~~~~~~~~~~~~~~~i~f~l~irRkplyY~v~ 245 (449)
T KOG3645|consen 166 QNCSIKFGSWTYDGSEVDGLDLNAQTIEVDLSDFIENSEWELLSVTVVREEKKYDCCPGPYSDITFTITIRRKPLYYTVN 245 (449)
T ss_pred eeEeEEEeccccCccccceeeeccccccCCHHHcCCCCcEEEEeeeeEEeecccCCCCCceeEEEEEEEEEeccceEEEe
Confidence 99976421 12478899999999999999999
Q ss_pred eehhhHHHhhheeeEeecCCCCccchhccceeeeeeheeehhhhcccCCCCcc-cchhhhhhhHHHHHHHHHHHHHhhhh
Q psy15134 99 TYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSY-VKAIDIWMSSCSVFVFLSLMEFAVVN 177 (259)
Q Consensus 99 ~~iP~~liv~ls~~~Fwl~~~~~~~Rv~lgit~lLt~~~~~~~~~~~lP~~sy-i~~id~~~~~~~~~vf~slle~~~V~ 177 (259)
+++||+++.+++.++||+|++...+|+++|+|++|+|++++..+++.+|++|. +|+|+.|++++|++++++++.++++.
T Consensus 246 liiP~~lis~l~il~fflp~~~~~eki~L~it~Ll~~tv~ll~vs~~~P~ts~~iPLig~y~~~~m~~~~~sv~~tv~i~ 325 (449)
T KOG3645|consen 246 LIIPCFLISFLSILGFFLPSDSGTEKVTLGITVLLAMTVFLLLVSDKMPPTSSVIPLIGKYLLFTMVLVTISVVVTVVIL 325 (449)
T ss_pred hhhhHHHHHHHHhheEEccCCCCCceEEEEHHHHHHHHHHHHHHHhhcCCccCcchHHHHHHHHHHHHHHHHHHHheeEE
Confidence 99999999999999999998885699999999999999999999999999998 99999999999999999999999999
Q ss_pred hccChhh
Q psy15134 178 NYMGPIA 184 (259)
Q Consensus 178 ~~~~~~~ 184 (259)
+++++..
T Consensus 326 ~~~~~~~ 332 (449)
T KOG3645|consen 326 NLHHRSP 332 (449)
T ss_pred eeecccC
Confidence 9987543
No 6
>KOG3646|consensus
Probab=99.95 E-value=2.6e-29 Score=230.35 Aligned_cols=167 Identities=26% Similarity=0.391 Sum_probs=153.4
Q ss_pred CCcccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEEEEe-----eeeeeeeeec-------------
Q psy15134 14 QNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKI-----KYSICMNAVL------------- 75 (259)
Q Consensus 14 ~~IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m~l-----d~q~c~~~~~------------- 75 (259)
++||+||+.++|+.+.+|+.. -...+.+++||+|.|.+|..++++|.+|+ |.|.|.+++.
T Consensus 106 ~~iWkPDVLLYNSade~FDsT--y~tN~Vv~~tG~v~~vPPGIfk~sCkiDItwFPFD~Q~C~mKFGSWTY~G~~lDL~~ 183 (486)
T KOG3646|consen 106 GNIWKPDVLLYNSADEQFDST--YKTNYVVYSTGSVLWVPPGIFKSSCKIDITWFPFDDQVCYLKFGSWTYAGILLDLRI 183 (486)
T ss_pred ccccCCceeccccccccCCCc--ceeeEEEccCCeeeecCCceeeeeeEEEEEEecccccEEEEEeeeEEEcceeeeeee
Confidence 599999999999999888763 33568999999999999999999999998 8899987641
Q ss_pred --------------CC---------------------ceeeeeEEEeeecccceeEEeeehhhHHHhhheeeEeecCCCC
Q psy15134 76 --------------LG---------------------NFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEA 120 (259)
Q Consensus 76 --------------~g---------------------~ys~l~~~~~l~R~~~yy~~~~~iP~~liv~ls~~~Fwl~~~~ 120 (259)
+| .|..+.+.++++||..||.+|+++||+++.+++..+|-+|||+
T Consensus 184 ~~~~g~~Dls~yi~NGEW~Ll~~pakr~~~~y~cC~epY~dv~F~l~irRRTLyYgfNlIiP~lLIs~m~lLgFtlppD~ 263 (486)
T KOG3646|consen 184 DDEDGGIDLSTYIPNGEWDLLGTPAKREEKTYDCCPEPYPDVTFYLHIRRRTLYYGFNLIIPSLLISLMSLLGFTLPPDA 263 (486)
T ss_pred ccccCCcchhhcccCCceeeccccccceeeecccCCCCcceeEEEEEEEehhhHHHHHHHHHHHHHHHHHHhccccCccc
Confidence 22 3567889999999999999999999999999999999999998
Q ss_pred ccchhccceeeeeeheeehhhhcccCCCCcc-cchhhhhhhHHHHHHHHHHHHHhhhhhccChh
Q psy15134 121 IPARVTLGVTSLLTLATQNTQSQQSLPPVSY-VKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPI 183 (259)
Q Consensus 121 ~~~Rv~lgit~lLt~~~~~~~~~~~lP~~sy-i~~id~~~~~~~~~vf~slle~~~V~~~~~~~ 183 (259)
+|++++++|.+|+..+|+..+++..|++|. +|+++.|+..||+.+.+|++-+++|.++|+|.
T Consensus 264 -gEKitL~iTilLsvc~FL~mvse~~PpTSeaVPllg~fFsc~m~iv~~SvvfTv~vLn~h~R~ 326 (486)
T KOG3646|consen 264 -GEKITLQITILLSVCFFLTMVSEMTPPTSEAVPLLGAFFSCCMFIVAASVVFTVIVLNLHHRT 326 (486)
T ss_pred -cceeeeeeehHHHHHHHHHHHHhhcCCccccccHHHHHHHHHHHHHHhhheeEEEEEeeeccC
Confidence 999999999999999999999999999998 99999999999999999999999999998763
No 7
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=99.94 E-value=1.8e-29 Score=211.00 Aligned_cols=82 Identities=48% Similarity=0.872 Sum_probs=78.7
Q ss_pred eehhhHHHhhheeeEeecCCCCccchhccceeeeeeheeehhhhcccCCCCcccchhhhhhhHHHHHHHHHHHHHhhhhh
Q psy15134 99 TYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNN 178 (259)
Q Consensus 99 ~~iP~~liv~ls~~~Fwl~~~~~~~Rv~lgit~lLt~~~~~~~~~~~lP~~syi~~id~~~~~~~~~vf~slle~~~V~~ 178 (259)
+|+||++++++||++||+|+++.|||+++|+|++|++++++..+++.||++||.+++|.|+.+|+++++++++|+++|++
T Consensus 1 l~~P~~li~~~s~~~f~~~~~~~~~rv~l~it~lL~~~~~~~~~~~~lP~~s~~~pl~~~~~~~~~~v~~~~~~~avv~~ 80 (237)
T PF02932_consen 1 LIIPCILIVVLSWLSFWLPPESGPERVTLGITTLLAMTVFLLMVAENLPPTSYAKPLDGWYFICTMFVFSASLEFAVVVY 80 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeehHHHHHHHHHhheEeCccccccccccchhHHHHHHHHHhhhhhhhcccccccchhhhhccccchhhhHHHHhhhhhh
Confidence 47999999999999999999997799999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q psy15134 179 YM 180 (259)
Q Consensus 179 ~~ 180 (259)
..
T Consensus 81 ~~ 82 (237)
T PF02932_consen 81 NI 82 (237)
T ss_dssp HH
T ss_pred hh
Confidence 65
No 8
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....
Probab=99.20 E-value=4.3e-11 Score=102.47 Aligned_cols=59 Identities=25% Similarity=0.444 Sum_probs=45.8
Q ss_pred CCcccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEEEEe-----eeeeeeee
Q psy15134 14 QNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKI-----KYSICMNA 73 (259)
Q Consensus 14 ~~IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m~l-----d~q~c~~~ 73 (259)
++||+||+++.|..+ ..+..+.++..++|++||+|.+..+++.++.|+||+ |.|.|.+.
T Consensus 80 ~~iW~P~l~~~n~~~-~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~ 143 (217)
T PF02931_consen 80 SQIWTPDLYFYNSVS-GSFEITEPNSNVRVYSDGTVRYSPRFTLTFSCPMDLRDFPFDSQNCSIK 143 (217)
T ss_dssp GGS----EEETTBSS-SEEECS-SSEEEEEETTSEEEEEEEEEEEEEECETTTSSSSSEEEEEEE
T ss_pred cceEecccccccccc-cceecccccccccccccchheeeecccccccccccccccccccceeEEE
Confidence 599999999999544 444545567889999999999999999999999998 88999764
No 9
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=37.68 E-value=53 Score=20.14 Aligned_cols=19 Identities=16% Similarity=0.578 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHhhhh
Q psy15134 159 MSSCSVFVFLSLMEFAVVN 177 (259)
Q Consensus 159 ~~~~~~~vf~slle~~~V~ 177 (259)
+...|+++|++++-|.+.+
T Consensus 19 F~l~mi~vFi~li~ytl~t 37 (38)
T PF09125_consen 19 FALAMILVFIALIGYTLAT 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4577888999998887653
No 10
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=27.59 E-value=22 Score=24.74 Aligned_cols=8 Identities=50% Similarity=1.132 Sum_probs=6.1
Q ss_pred CCcccCCe
Q psy15134 14 QNIWRPDC 21 (259)
Q Consensus 14 ~~IW~PDi 21 (259)
=+||+||+
T Consensus 20 VqiWVPDt 27 (65)
T PF11455_consen 20 VQIWVPDT 27 (65)
T ss_pred ceeeCCCC
Confidence 36888887
No 11
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=22.91 E-value=38 Score=21.99 Aligned_cols=21 Identities=10% Similarity=-0.106 Sum_probs=14.4
Q ss_pred EEEeeCceEEEecCceEEEEE
Q psy15134 41 LWLYHDKTLLYMSNCTAFIQI 61 (259)
Q Consensus 41 ~~I~~~G~V~~~~~~~~~~~C 61 (259)
++|++||+|.-...-..-.+|
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C 23 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSC 23 (48)
T ss_pred EEECCCcEEEEEEEeccChhH
Confidence 688999999876554444444
No 12
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=20.97 E-value=1.5e+02 Score=18.20 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=14.6
Q ss_pred ccchhhhhhhHHHHHHHHHHHH
Q psy15134 151 YVKAIDIWMSSCSVFVFLSLME 172 (259)
Q Consensus 151 yi~~id~~~~~~~~~vf~slle 172 (259)
.++++|.|+.+.-.+.|+.++.
T Consensus 3 ~ltl~dfylc~l~~llflv~im 24 (43)
T PF11395_consen 3 HLTLFDFYLCFLSFLLFLVIIM 24 (43)
T ss_pred ceehhHHHHHHHHHHHHHHHHH
Confidence 3678999987765555555443
No 13
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=20.66 E-value=1.4e+02 Score=24.21 Aligned_cols=36 Identities=11% Similarity=0.073 Sum_probs=16.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhhhhccChhhhhhhc
Q psy15134 154 AIDIWMSSCSVFVFLSLMEFAVVNNYMGPIATKAMK 189 (259)
Q Consensus 154 ~id~~~~~~~~~vf~slle~~~V~~~~~~~~~~~~~ 189 (259)
...-++...++-+.+.++...+..++..++++|++.
T Consensus 26 ffsthm~tILiaIvVliiiiivli~lcssRKkKaaA 61 (189)
T PF05568_consen 26 FFSTHMYTILIAIVVLIIIIIVLIYLCSSRKKKAAA 61 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 333444443333333444444445555555555543
Done!