Query psy15134
Match_columns 259
No_of_seqs 212 out of 1370
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 21:27:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15134.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15134hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rhw_A Avermectin-sensitive gl 100.0 2.3E-50 8E-55 369.1 6.5 204 14-258 83-338 (347)
2 3tlw_A GLR4197 protein, GLIC; 100.0 8.6E-46 2.9E-50 335.4 7.0 198 10-257 69-317 (321)
3 2bg9_A Acetylcholine receptor 100.0 2.2E-44 7.4E-49 332.3 -1.6 224 13-254 82-358 (370)
4 2bg9_E Acetylcholine receptor 100.0 1.1E-43 3.8E-48 327.6 -2.6 224 14-254 82-359 (370)
5 2bg9_B Acetylcholine receptor 100.0 6.7E-43 2.3E-47 322.3 -0.1 220 14-255 83-356 (370)
6 2bg9_C Acetylcholine receptor 100.0 3.5E-43 1.2E-47 324.1 -2.4 224 14-255 85-358 (369)
7 3rqw_A ELIC pentameric ligand 100.0 1.9E-41 6.7E-46 306.9 4.8 172 4-181 54-288 (322)
8 4aq5_A Acetylcholine receptor 100.0 2.1E-39 7E-44 306.6 -1.3 167 14-183 107-326 (461)
9 4aq5_B Acetylcholine receptor 100.0 1.8E-38 6.1E-43 302.5 2.0 166 14-182 107-331 (493)
10 4aq5_E Acetylcholine receptor 100.0 5.4E-39 1.8E-43 305.7 -4.0 168 14-183 82-310 (488)
11 4aq5_C Acetylcholine receptor 100.0 7.6E-38 2.6E-42 299.9 -0.8 167 14-183 106-337 (522)
12 2ksr_A Neuronal acetylcholine 100.0 2.7E-30 9.2E-35 211.9 -0.4 140 76-251 12-152 (164)
13 2lkg_A Acetylcholine receptor; 99.9 1.9E-31 6.6E-36 213.4 -9.6 115 67-182 21-139 (140)
14 2lly_A Neuronal acetylcholine 99.9 2.5E-28 8.6E-33 195.0 0.2 125 87-253 2-127 (137)
15 1vry_A Glycine receptor alpha- 99.8 1.9E-21 6.6E-26 138.4 0.0 65 121-185 1-65 (76)
16 1oed_A Acetylcholine receptor 99.8 1.2E-22 4.1E-27 174.9 -7.7 91 92-183 1-92 (227)
17 1oed_B Acetylcholine receptor 99.8 2.6E-22 9E-27 175.1 -8.1 90 92-182 1-91 (250)
18 1oed_E Acetylcholine receptor 99.8 3.4E-22 1.2E-26 175.3 -7.4 91 92-182 1-92 (260)
19 1oed_C Acetylcholine receptor 99.8 1.6E-21 5.6E-26 171.0 -8.0 90 92-182 1-91 (260)
20 2wn9_A Soluble acetylcholine r 99.7 1.2E-17 4.1E-22 144.0 6.5 85 14-101 92-226 (228)
21 1uw6_A Acetylcholine-binding p 99.6 6.6E-16 2.2E-20 131.5 6.1 81 14-97 80-211 (211)
22 2qc1_B Acetylcholine receptor 99.6 3E-15 1E-19 127.5 9.5 58 14-73 84-146 (212)
23 4afh_A ACHBP; acetylcholine-bi 99.5 3.4E-14 1.2E-18 122.5 8.4 83 14-98 92-220 (230)
24 2bj0_A Acetylcholine-binding p 99.5 3.1E-14 1.1E-18 120.4 5.8 58 13-74 77-139 (203)
25 3igq_A GLR4197 protein; plgic 99.5 7E-14 2.4E-18 118.2 6.4 59 12-74 67-130 (201)
26 3sq6_A ACHBP, neuronal acetylc 99.4 3.3E-13 1.1E-17 114.3 5.6 56 14-74 81-142 (204)
27 4aod_A Acetylcholine-binding p 99.4 5.6E-13 1.9E-17 113.0 5.5 58 14-75 82-144 (205)
28 4aoe_A Acetylcholine-binding p 99.3 1.5E-12 5.2E-17 110.3 5.1 60 14-76 82-145 (205)
29 1mot_A Glycine receptor alpha- 97.4 1.3E-05 4.5E-10 45.7 -1.4 28 121-148 1-28 (28)
No 1
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=100.00 E-value=2.3e-50 Score=369.06 Aligned_cols=204 Identities=40% Similarity=0.801 Sum_probs=187.6
Q ss_pred CCcccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEEEEe-----eeeeeeeee--------------
Q psy15134 14 QNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKI-----KYSICMNAV-------------- 74 (259)
Q Consensus 14 ~~IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m~l-----d~q~c~~~~-------------- 74 (259)
++||+||++++|++++.+|..+.+|..++|++||+|.|..|++.+++|+||+ |.|+|++++
T Consensus 83 ~~IW~PDi~l~N~~~~~~~~~~~~n~~v~i~~~G~V~~~~~~~~~s~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~ 162 (347)
T 3rhw_A 83 HQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLW 162 (347)
T ss_dssp CCCCCCCEECTTEEEEEECCSSSCSEEEEEETTSEEEEEEEEEEEEECCCCCTTGGGCEEEEEEEEEESSCCTTTEEEEE
T ss_pred hceecCCEeeeccccccccccccccEEEEEeCCCCEEEecceEEEEEeeeeeccCCCcceeEEEEeccCcCChhhEEEEe
Confidence 9999999999999999999988899999999999999999999999999998 899997643
Q ss_pred ---------------------------------cCCceeeeeEEEeeecccceeEEeeehhhHHHhhheeeEeecCCCCc
Q psy15134 75 ---------------------------------LLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAI 121 (259)
Q Consensus 75 ---------------------------------~~g~ys~l~~~~~l~R~~~yy~~~~~iP~~liv~ls~~~Fwl~~~~~ 121 (259)
.+|.|+++.+.+++||+++||++++++||++++++||++||+|+++.
T Consensus 163 ~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~lp~~~~ 242 (347)
T 3rhw_A 163 KEHSPLQLKVGLSSSLPSFQLTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAI 242 (347)
T ss_dssp CSSCSEEECTTSGGGCCSEEEEEEEEEECCEECSSCEECEEEEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTTSCTTCH
T ss_pred cCCCceeecCcceeEccceEEeeEEeeEeeeeecccceeEEEEEEEEEEEeeEEEEEeehhHHHHHHHhheEEeccCCCC
Confidence 23678999999999999999999999999999999999999999998
Q ss_pred cchhccceeeeeeheeehhhhcccCCCCcccchhhhhhhHHHHHHHHHHHHHhhhhhccChhhhhhhccCChhhhccccc
Q psy15134 122 PARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPIATKAMKGYSEEDLRNNVD 201 (259)
Q Consensus 122 ~~Rv~lgit~lLt~~~~~~~~~~~lP~~syi~~id~~~~~~~~~vf~slle~~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (259)
|+|+++|+|++|++++++..+++.||++||+|+||+|+++|++|+|+|++|+++|++++++.+++
T Consensus 243 ~~Rv~lgit~lLt~tv~~~~~~~~lP~~S~v~~id~~~~~~~~~v~~slle~~~v~~l~~~~~~~--------------- 307 (347)
T 3rhw_A 243 PARVTLGVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHIANAGTTE--------------- 307 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH---------------
T ss_pred cceEEEEeehHHHHHHHHHHHHhhCCCccceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcch---------------
Confidence 99999999999999999999999999999999999999999999999999999999986432211
Q ss_pred cccCCCCCCCCCcCCCCCCCCCCccCCCcchhhhhhhhhhhcchhHHHHHHHHhhhc
Q psy15134 202 EFKNLDPTRSRSITIPQVPMYPTFCNGREIALYIDKFSRFFFPFSFFVLNILYWTSF 258 (259)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ID~~sRi~FP~~F~~Fni~YW~~y 258 (259)
.+..|+++|+++|++||++|++||+.||.-|
T Consensus 308 --------------------------~~~~~~~~~~~~~~~~p~~~~i~n~~~~~~~ 338 (347)
T 3rhw_A 308 --------------------------WNDISKRVDLISRALFPVLFFVFNILYWSRF 338 (347)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 0124789999999999999999999999764
No 2
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=100.00 E-value=8.6e-46 Score=335.38 Aligned_cols=198 Identities=20% Similarity=0.257 Sum_probs=178.0
Q ss_pred ccccCCcccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEEEEe-----eeeeeeeee----------
Q psy15134 10 VNWLQNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKI-----KYSICMNAV---------- 74 (259)
Q Consensus 10 ~~~~~~IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m~l-----d~q~c~~~~---------- 74 (259)
....++||+||++++|++++. +.+|..++|++||+|.|..|++.+++|+||+ |.|+|++++
T Consensus 69 ~~~~~~IW~PDi~l~N~~~~~----~~~~~~~~v~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v 144 (321)
T 3tlw_A 69 TYEPEAIWIPEIRFVNVENAR----DADVVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNI 144 (321)
T ss_dssp ECCGGGSCCCCEEESSBSSCC----EEEEEEEEECTTCEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEEECCSSCCE
T ss_pred cccccCeEcCcEEeecccccc----cccceeEEEeCCccEEEecceEEEEEEEeecccCCCCceeEeEEEecccCChhhE
Confidence 344689999999999999877 4678899999999999999999999999998 999997643
Q ss_pred ------------------------------------cCCceeeeeEEEeeecccceeEEeeehhhHHHhhheeeEeecCC
Q psy15134 75 ------------------------------------LLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKP 118 (259)
Q Consensus 75 ------------------------------------~~g~ys~l~~~~~l~R~~~yy~~~~~iP~~liv~ls~~~Fwl~~ 118 (259)
..|+|+++.+.+++||+++||++++++||++++++||++|| |+
T Consensus 145 ~l~~~~~~~~~~~~~~~~ew~l~~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~-p~ 223 (321)
T 3tlw_A 145 VLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW-ST 223 (321)
T ss_dssp EEEECGGGCEECTTCCBTTEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCTTHHHHTHHHHHHHHHHHGGGGG-CC
T ss_pred EEEEcCCcccccccccccceEEEeeEeEEeeEEecCCCCceeEEEEEEEEEEeeceeehhHHHHHHHHHHHhheeec-cC
Confidence 23568999999999999999999999999999999999999 55
Q ss_pred CCccchhccceeeeeeheeehhhhcccCCCCcccchhhhhhhHHHHHHHHHHHHHhhhhhccChhhhhhhccCChhhhcc
Q psy15134 119 EAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPIATKAMKGYSEEDLRN 198 (259)
Q Consensus 119 ~~~~~Rv~lgit~lLt~~~~~~~~~~~lP~~syi~~id~~~~~~~~~vf~slle~~~V~~~~~~~~~~~~~~~~~~~~~~ 198 (259)
+.++|+++|+|++|++++++..+++.||++||+|+||+|+.+|++++++|++|+++|+++++++.+
T Consensus 224 -~~~~Rv~l~it~lL~~t~~~~~~~~~lP~~s~vp~i~~~~~~~~~~v~~sll~~v~v~~l~~~~~~------------- 289 (321)
T 3tlw_A 224 -SYEANVTLVVSTLIAHIAFNILVETCLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQP------------- 289 (321)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-------------
T ss_pred -CCCCcEEEEhhHHHHHHHHHHHHHhhCCCccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcc-------------
Confidence 559999999999999999999999999999999999999999999999999999999998743211
Q ss_pred ccccccCCCCCCCCCcCCCCCCCCCCccCCCcchhhhhhhhhhhcchhHHHHHHHHhhh
Q psy15134 199 NVDEFKNLDPTRSRSITIPQVPMYPTFCNGREIALYIDKFSRFFFPFSFFVLNILYWTS 257 (259)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ID~~sRi~FP~~F~~Fni~YW~~ 257 (259)
..|.++|+..|.+||++|++++++|+.+
T Consensus 290 -------------------------------~~a~~~p~w~r~~fp~~f~~~~~i~~~~ 317 (321)
T 3tlw_A 290 -------------------------------ARAASITRASRIAFPVVFLLANIILAFL 317 (321)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------ccccccChhheeeehHHHHHHHHHHHhh
Confidence 1356899999999999999999988765
No 3
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=2.2e-44 Score=332.28 Aligned_cols=224 Identities=17% Similarity=0.210 Sum_probs=178.8
Q ss_pred cCCcccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEEEEe-----eeeeeeeee-------------
Q psy15134 13 LQNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKI-----KYSICMNAV------------- 74 (259)
Q Consensus 13 ~~~IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m~l-----d~q~c~~~~------------- 74 (259)
.++||+||++++|++++.+|.. .+..++|++||+|.|+.|++.+++|+||+ |.|+|++++
T Consensus 82 ~~~IW~PDi~~~N~~~~~~~~~--~~~~~~i~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~ 159 (370)
T 2bg9_A 82 SDDVWLPDLVLYNNADGDFAIV--HMTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSIS 159 (370)
T ss_dssp GGGSCCCCEEETTCCCSCEESC--SSCEEEECSSCCEEECCEEEEEEECCCCTTSSSSSCEEEEEEEEESSCCTTTEEEE
T ss_pred hhhccCCcEecccccccccccc--ccceEEEECCeeEEEecceEEEEECCCCcCCCCCCcceeeEEEEEecccCcEEEEE
Confidence 4899999999999999888874 35679999999999999999999999998 899997643
Q ss_pred -------------------------------c---CCceeeeeEEEeeecccceeEEeeehhhHHHhhheeeEeecCCCC
Q psy15134 75 -------------------------------L---LGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEA 120 (259)
Q Consensus 75 -------------------------------~---~g~ys~l~~~~~l~R~~~yy~~~~~iP~~liv~ls~~~Fwl~~~~ 120 (259)
. +|.|+++.+.|++||+++||++++++||++++++||++||+|+++
T Consensus 160 ~~~~~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~~ 239 (370)
T 2bg9_A 160 PESDRPDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS 239 (370)
T ss_dssp CCCCCCSTTSCCTTCSSEEEEEEEEEEECCCSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ecCCCcccccccccceEEEEcceEEEEEEecCCCCCCCeeEEEEEEEEEEccchhhhhhhhHHHHHHHHHHHheecCCCC
Confidence 1 256899999999999999999999999999999999999999998
Q ss_pred ccchhccceeeeeeheeehhhhcccCCCCcc-cchhhhhhhHHHHHHHHHHHHHhhhhhccChhhhhhhccCChhhhccc
Q psy15134 121 IPARVTLGVTSLLTLATQNTQSQQSLPPVSY-VKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPIATKAMKGYSEEDLRNN 199 (259)
Q Consensus 121 ~~~Rv~lgit~lLt~~~~~~~~~~~lP~~sy-i~~id~~~~~~~~~vf~slle~~~V~~~~~~~~~~~~~~~~~~~~~~~ 199 (259)
++|+++|+|++|++++++..+++.||++|| +|+||+|+++|++|+++|++|+++|.++++|...... ..++.+..
T Consensus 240 -~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~~~~~~~~~~v~~sl~~~~~v~~~~~r~~~~~~---~~~~~~~i 315 (370)
T 2bg9_A 240 -GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSIIVTVVVINTHHRSPSTHS---AIEGVKYI 315 (370)
T ss_dssp -GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHCSTTTCC---HHHHHHHH
T ss_pred -CCeEEEeHHHHHHHHHHHHHHHhhCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccch---HHHHHHHH
Confidence 999999999999999999999999999998 9999999999999999999999999988754322100 00000000
Q ss_pred cccccCCCCCCCCCcCCCCCCCCCCccCCCcchhhhhhhhhhhcchhHHHHHHHH
Q psy15134 200 VDEFKNLDPTRSRSITIPQVPMYPTFCNGREIALYIDKFSRFFFPFSFFVLNILY 254 (259)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ID~~sRi~FP~~F~~Fni~Y 254 (259)
.+..++. ......+ ..=+..|..||+.++++||++|++..++.
T Consensus 316 ~~~~~~~-----~~~~~~~-------~~W~~~a~vlDr~~~~~f~~~~~~~t~~i 358 (370)
T 2bg9_A 316 AEHMKSD-----EESSNAA-------EEWKYVAMVIDHILLCVFMLICIIGTVSV 358 (370)
T ss_dssp HHHHHHH-----HHHHHHH-------HHTTSCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-----hHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 0000000 00122578999999999999998876654
No 4
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=1.1e-43 Score=327.56 Aligned_cols=224 Identities=16% Similarity=0.172 Sum_probs=178.6
Q ss_pred CCcccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEEEEe-----eeeeeeeee--------------
Q psy15134 14 QNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKI-----KYSICMNAV-------------- 74 (259)
Q Consensus 14 ~~IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m~l-----d~q~c~~~~-------------- 74 (259)
++||+||++++|++++.+|..+.+| ++|++||+|.|+.|++.+++|+||+ |.|+|++++
T Consensus 82 ~~IW~PDi~~~N~~~~~~~~~~~~~--~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~ 159 (370)
T 2bg9_E 82 ELLWLPDVVLENNVDGQFEVAYYAN--VLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQL 159 (370)
T ss_dssp GGSCCCCEEESSSCCSCCBSSSSCC--CEECSSSEEEECCEEEEEECCCCSSCSSSSSCCBCCEEEEESSSCTTSCCEEC
T ss_pred hccCCCCEeeccccCCccccccccc--EEEECCccEEEecCEEEEEECcccccCCCCCeEEEEEEEEeeccccceeEEEe
Confidence 7999999999999999998765555 5799999999999999999999998 888886532
Q ss_pred ----------------------------------cCCceeeeeEEEeeecccceeEEeeehhhHHHhhheeeEeecCCCC
Q psy15134 75 ----------------------------------LLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEA 120 (259)
Q Consensus 75 ----------------------------------~~g~ys~l~~~~~l~R~~~yy~~~~~iP~~liv~ls~~~Fwl~~~~ 120 (259)
.+|.|+++.+.|++||+++||++++++||++++++||++||+|+++
T Consensus 160 ~~~~~~~~~~~~~~~eW~l~~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~a 239 (370)
T 2bg9_E 160 SAEEGIDPEDFTENGEWTIRHRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQA 239 (370)
T ss_dssp CCSCCCGGGSCCTTSSEEEEECCCCEECCCCTTCCCSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCCcccHhhcccccEEEEecceeEEEEEecccCCCCCCcEEEEEEEEEEccCceeEEEehhHHHHHHHHHHeEEecccc
Confidence 1356889999999999999999999999999999999999999997
Q ss_pred ccchhccceeeeeeheeehhhhcccCCCCcc-cchhhhhhhHHHHHHHHHHHHHhhhhhccChhhhhhhccCChhhhccc
Q psy15134 121 IPARVTLGVTSLLTLATQNTQSQQSLPPVSY-VKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPIATKAMKGYSEEDLRNN 199 (259)
Q Consensus 121 ~~~Rv~lgit~lLt~~~~~~~~~~~lP~~sy-i~~id~~~~~~~~~vf~slle~~~V~~~~~~~~~~~~~~~~~~~~~~~ 199 (259)
.++|+++|+|++|++++++..+++.||++|| +|+||+|+.+||+++++|++|+++|.++++|...... .-++.+..
T Consensus 240 ~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~~~~~~~~~~v~~sll~~v~v~~~~~r~~~~~~---~~~~~~~i 316 (370)
T 2bg9_E 240 GGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSLVIVTNCVIVLNVSLRTPNTHS---CVEACNFI 316 (370)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCSTTTCC---HHHHHHHH
T ss_pred CcceeEEeeeHHHHHHHHHHHHHHhCCCccCCCChHHHHHHHHHHHHHHHHHHHhhheeeeccCCCCCc---chhhhhhh
Confidence 7999999999999999999999999999999 9999999999999999999999999988765422100 00000000
Q ss_pred cccccCCCCCCCCCcCCCCCCCCCCccCCCcchhhhhhhhhhhcchhHHHHHHHH
Q psy15134 200 VDEFKNLDPTRSRSITIPQVPMYPTFCNGREIALYIDKFSRFFFPFSFFVLNILY 254 (259)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ID~~sRi~FP~~F~~Fni~Y 254 (259)
.+..++. . ..... + ..=+..|..||+.++++|+++|++.+++-
T Consensus 317 ~~~~~~~----~-~~~~~---~----~~W~~~a~vlDr~~~~~f~~~~~~~t~~i 359 (370)
T 2bg9_E 317 AKSTKEQ----N-DSGSE---N----ENWVLIGKVIDKACFWIALLLFSLGTLAI 359 (370)
T ss_dssp HHHHHHH----H-HHHHH---H----HHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhh----h-HHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 0 00000 0 00012588999999999999999888764
No 5
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=6.7e-43 Score=322.32 Aligned_cols=220 Identities=16% Similarity=0.286 Sum_probs=178.3
Q ss_pred CCcccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEEEEe-----eeeeeeeee--------------
Q psy15134 14 QNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKI-----KYSICMNAV-------------- 74 (259)
Q Consensus 14 ~~IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m~l-----d~q~c~~~~-------------- 74 (259)
++||+||++++|++++.+|..+.+ .++|++||+|.|+.|++.+++|+||+ |.|+|++++
T Consensus 83 ~~IW~PDi~~~N~~~~~~~~~~~~--~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~ 160 (370)
T 2bg9_B 83 DDVWQPDIVLMNNNDGSFEITLHV--NVLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQH 160 (370)
T ss_dssp SSSCCCCEEESSCCCSCEESSSSC--EEEEETTSEEEECCEEEEEECCCCTTCSSSTTCCCCEEEEEESSCCBTSCEEEC
T ss_pred hhccCCCccccccccccccccccc--eEEEeCCceEEEEecceEEEEccCcccCCCCCceeeeEEEEeccccccEEEEEe
Confidence 799999999999999988875544 47899999999999999999999998 889997643
Q ss_pred ------------------------------cCCceeeeeEEEeeecccceeEEeeehhhHHHhhheeeEeecCCCCccch
Q psy15134 75 ------------------------------LLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPAR 124 (259)
Q Consensus 75 ------------------------------~~g~ys~l~~~~~l~R~~~yy~~~~~iP~~liv~ls~~~Fwl~~~~~~~R 124 (259)
.+|.|+++.+.|++||+++||++++++||++++++||++||+|++ .++|
T Consensus 161 ~~~~~~~~~~~~~~~eW~l~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~-~~~R 239 (370)
T 2bg9_B 161 ALDAMINQDAFTENGQWSIEHKPSRKNWRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPD-AGEK 239 (370)
T ss_dssp SCCCCCSTTSCCTTCSSEECCCCEEECCCTTSSSBCCEEEECCEECCCCSSHHHHHHHHHHHHHHHHHHHHSTTT-CTTH
T ss_pred ccCCccccccccccceEEEeccceEEeecCCCCCccEEEEEEEEEEcccceeeeecchHHHHHHHHhheEEccCC-CCce
Confidence 135688999999999999999999999999999999999999999 5999
Q ss_pred hccceeeeeeheeehhhhcccCCCCcc-cchhhhhhhHHHHHHHHHHHHHhhhhhccChhhhh-h-hcc--CChhhhccc
Q psy15134 125 VTLGVTSLLTLATQNTQSQQSLPPVSY-VKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPIATK-A-MKG--YSEEDLRNN 199 (259)
Q Consensus 125 v~lgit~lLt~~~~~~~~~~~lP~~sy-i~~id~~~~~~~~~vf~slle~~~V~~~~~~~~~~-~-~~~--~~~~~~~~~ 199 (259)
+++|+|++|++++++..+++.||++|| +|+||+|+.+||+++++|++|+++|.++++|.... + .++ .-.+..++
T Consensus 240 v~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~~~~~~~~~~v~~sll~~v~v~~~~~r~~~~~~~~~~~~~i~~~~~~- 318 (370)
T 2bg9_B 240 MSLSISALLALTVFLLLLADKVPETSLSVPIIISYLMFIMILVAFSVILSVVVLNLHHRSPNTHEAVEAIKYIAEQLES- 318 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHHHHHHH-
T ss_pred EEEEehHHHHHHHHHHHHHhhCCCccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcchhhHHHHHHHHHh-
Confidence 999999999999999999999999998 99999999999999999999999998876543211 0 000 00000000
Q ss_pred cccccCCCCCCCCCcCCCCCCCCCCccCCCcchhhhhhhhhhhcchhHHHHHHHHh
Q psy15134 200 VDEFKNLDPTRSRSITIPQVPMYPTFCNGREIALYIDKFSRFFFPFSFFVLNILYW 255 (259)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ID~~sRi~FP~~F~~Fni~YW 255 (259)
.+... . .+ ..=+..|..+|+.+.++|+++|++++++..
T Consensus 319 ~~~~~--------~---~~-------~~W~~~a~v~Dr~~~~~f~~~~~~~t~~i~ 356 (370)
T 2bg9_B 319 ASEFD--------D---LK-------KDWQYVAMVADRLFLYIFITMCSIGTFSIF 356 (370)
T ss_dssp HHHHH--------H---HH-------HHHHSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHh--------h---hH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 00 000125889999999999999999988754
No 6
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=3.5e-43 Score=324.14 Aligned_cols=224 Identities=16% Similarity=0.224 Sum_probs=178.0
Q ss_pred CCcccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEEEEe-----eeeeeeeee--------------
Q psy15134 14 QNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKI-----KYSICMNAV-------------- 74 (259)
Q Consensus 14 ~~IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m~l-----d~q~c~~~~-------------- 74 (259)
++||+||++++|++++.+|..+.+| ++|++||+|.|+.|++.+++|+||+ |.|+|++++
T Consensus 85 ~~IW~PDi~~~N~~~~~~~~~~~~~--~~i~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~ 162 (369)
T 2bg9_C 85 ELIWIPDIVLQNNNDGQYNVAYFCN--VLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDL 162 (369)
T ss_dssp GGSCCCCEEETTTCSSCCBSSSSCC--EEECSSSEEEECCEEEEEECCSCGGGSSSTTCCEEEEEEEESSCCTTTCEEEC
T ss_pred HhccCCcEecccccccccccccccc--EEEECCccEEEecCEEEEEECcCcccCCCCCceEeeEEEEEecccCceEEEEE
Confidence 7999999999999999988765544 6899999999999999999999998 899997642
Q ss_pred ------------------------------cCCceeeeeEEEeeecccceeEEeeehhhHHHhhheeeEeecCCCCccch
Q psy15134 75 ------------------------------LLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPAR 124 (259)
Q Consensus 75 ------------------------------~~g~ys~l~~~~~l~R~~~yy~~~~~iP~~liv~ls~~~Fwl~~~~~~~R 124 (259)
.+|.|+++.+.|++||+++||++++++||++++++||++||+|++ .++|
T Consensus 163 ~~~~~~~~~~~ew~l~~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~-~~~R 241 (369)
T 2bg9_C 163 IIDPEAFTENGEWEIIHKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAE-SGEK 241 (369)
T ss_dssp CCGGGSCCTTSSEEEEECCEEEEECCCSSCSSCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHH-HTTC
T ss_pred ecccccceeCCEEEEeeeeEEEEEEecCCCCCCCccEEEEEEEEEEccceeEEEEcchHHHHHHHHhheEEecCC-CCCe
Confidence 135689999999999999999999999999999999999999999 5999
Q ss_pred hccceeeeeeheeehhhhcccCCCCcc-cchhhhhhhHHHHHHHHHHHHHhhhhhccChhhhhhhccCChhhhccccccc
Q psy15134 125 VTLGVTSLLTLATQNTQSQQSLPPVSY-VKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPIATKAMKGYSEEDLRNNVDEF 203 (259)
Q Consensus 125 v~lgit~lLt~~~~~~~~~~~lP~~sy-i~~id~~~~~~~~~vf~slle~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (259)
+++|+|++|++++++..+++.||++|| +|+||+|+.+||+++++|++|+++|.++++|...... . -++.+...+..
T Consensus 242 v~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~~~~~~~~~~v~~sll~~v~v~~~~~r~~~~~~-~--~~~~~~i~~~~ 318 (369)
T 2bg9_C 242 MSTAICVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVVVNCGIVLNFHFRTPSTHS-G--IDSTNYIVKQI 318 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTCC-H--HHHHHHHHHHH
T ss_pred EEEEhHHHHHHHHHHHHHHHhCCCCccCccHHHHHHHHHHHHHHHHHHHHhheeeeeccCCCCCc-c--ccchhHHHHHH
Confidence 999999999999999999999999998 9999999999999999999999999887654321100 0 00000000000
Q ss_pred cCCCCCCCCCcCCCCCCCCCCccCCCcchhhhhhhhhhhcchhHHHHHHHHh
Q psy15134 204 KNLDPTRSRSITIPQVPMYPTFCNGREIALYIDKFSRFFFPFSFFVLNILYW 255 (259)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ID~~sRi~FP~~F~~Fni~YW 255 (259)
++. . .....+ ..=+..|..+|+.+.++|+++|++.+++..
T Consensus 319 ~~~----~-~~~~~~-------~~W~~~a~vlDr~~~~~f~~~~~~~~~~i~ 358 (369)
T 2bg9_C 319 KEK----N-AYDEEV-------GNWNLVGQTIDRLSMFIITPVMVLGTIFIF 358 (369)
T ss_dssp HHH----H-HHHHHH-------HHHHHCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----H-HHHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 000000 000125789999999999999999887654
No 7
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=100.00 E-value=1.9e-41 Score=306.93 Aligned_cols=172 Identities=19% Similarity=0.309 Sum_probs=157.6
Q ss_pred ceeeeCccc-----cCCcccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEEEEe-----eeeeeeee
Q psy15134 4 EYRILDVNW-----LQNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKI-----KYSICMNA 73 (259)
Q Consensus 4 ~~~~l~~~~-----~~~IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m~l-----d~q~c~~~ 73 (259)
+.+.+++++ .++||+||++++|++++.+ .++..++|++||+|.|..|++.+++|+||+ |.|+|+++
T Consensus 54 ~~l~l~~~~~~~ip~~~IW~Pdi~l~N~~~~~~----~~~~~~~i~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~ 129 (322)
T 3rqw_A 54 KPLIVENTQIERWINNGLWVPALEFINVVGSPD----TGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLE 129 (322)
T ss_dssp SCEEEETHHHHHHHHTTCCCCCEEETTBSSCCE----EEEEEEEECTTSEEEEEEEEEEEEECCCCCTTTTSCEEEEEEE
T ss_pred CceeecchhhcccccccccCCcEEEEcccCccc----ccceeEEEeCCcCEEEeeceeEEEeccccccCCCCCCcEEEEE
Confidence 344566666 7999999999999999777 567889999999999999999999999998 88888653
Q ss_pred ec-----------------------------------------------------CCceeeeeEEEeeecccceeEEeee
Q psy15134 74 VL-----------------------------------------------------LGNFTCIAVVFNLRRRLGYHLFHTY 100 (259)
Q Consensus 74 ~~-----------------------------------------------------~g~ys~l~~~~~l~R~~~yy~~~~~ 100 (259)
+. .|+|+++.+++++||+++||+++++
T Consensus 130 f~S~~y~~~~v~l~~~~~~~~~~~~~~~~ew~l~~~~~~~~~~~~y~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~ 209 (322)
T 3rqw_A 130 LEPFSYNNQQLRFSDIQVYTENIDNEEIDEWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFI 209 (322)
T ss_dssp EEESSCSSEEEEEEEEECCSCSSSSCSSSSEEECCSCEECCEEEECTTSCCSSSSCCEEEEEEEEEEEEECCHHHHHHTH
T ss_pred EEEcccCcceEEEEECCCcccccCCCCCCceEEEeeeEEEeeccccceeeeccCCCCCeEEEEEEEEEEEeeeeeeehHH
Confidence 20 4568899999999999999999999
Q ss_pred hhhHHHhhheeeEeecCCCCccchhccceeeeeeheeehhhhcccCCCCcccchhhhhhhHHHHHHHHHHHHHhhhhhcc
Q psy15134 101 IPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYM 180 (259)
Q Consensus 101 iP~~liv~ls~~~Fwl~~~~~~~Rv~lgit~lLt~~~~~~~~~~~lP~~syi~~id~~~~~~~~~vf~slle~~~V~~~~ 180 (259)
+||++++++||++||+| +.++|+++|+|++|++++++..+++.||++||+|+||+|+.+|++++++|++|+++|++++
T Consensus 210 iP~~li~~ls~~sF~lp--~~~~Rv~l~it~lL~~~~~~~~~~~~lP~~s~vp~i~~~~~~~~~~v~~sll~~~~v~~l~ 287 (322)
T 3rqw_A 210 LPLGLIIAASWSVFWLE--SFSERLQTSFTLMLTVVAYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFAHHRQ 287 (322)
T ss_dssp HHHHHHHHHHHGGGGCS--SHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhccC--CCCCcEEEEEehHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 5599999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q psy15134 181 G 181 (259)
Q Consensus 181 ~ 181 (259)
+
T Consensus 288 ~ 288 (322)
T 3rqw_A 288 A 288 (322)
T ss_dssp S
T ss_pred c
Confidence 5
No 8
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=100.00 E-value=2.1e-39 Score=306.56 Aligned_cols=167 Identities=19% Similarity=0.262 Sum_probs=154.3
Q ss_pred CCcccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEEEEe-----eeeeeeeee--------------
Q psy15134 14 QNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKI-----KYSICMNAV-------------- 74 (259)
Q Consensus 14 ~~IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m~l-----d~q~c~~~~-------------- 74 (259)
++||+||++++|++++.+|... +..++|++||+|.|..|++.+++|+||+ |.|+|++++
T Consensus 107 ~~IW~PDi~l~N~~d~~~~~~~--~~~v~v~~dG~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~ 184 (461)
T 4aq5_A 107 DDVWLPDLVLYNNADGDFAIVH--MTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISP 184 (461)
T ss_dssp GGSCCCCEEESSCCCSCCTTCS--SCEEEECSBCCEEECCEEEEEEECCCCGGGSSSSCEEEEEEEEESSCCTTTEEEEC
T ss_pred CCEECCceeeeccccccccccc--ccceEEcCCccEEEeccccccccccccccCCCCccCccCeEEeccccCCceEEEEe
Confidence 8999999999999999888643 3458999999999999999999999998 899997643
Q ss_pred --------------------------------cCC-ceeeeeEEEeeecccceeEEeeehhhHHHhhheeeEeecCCCCc
Q psy15134 75 --------------------------------LLG-NFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAI 121 (259)
Q Consensus 75 --------------------------------~~g-~ys~l~~~~~l~R~~~yy~~~~~iP~~liv~ls~~~Fwl~~~~~ 121 (259)
..| .|+++.+.|++||+++||++++++||++++++||++||+|+++
T Consensus 185 ~~~~~~l~~~~~~~eW~l~~~~~~~~~~~y~~~~~~~y~~l~~~~~l~R~~~~Y~i~l~iP~~liv~ls~lsF~Lp~~s- 263 (461)
T 4aq5_A 185 ESDRPDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS- 263 (461)
T ss_dssp CCCCCSGGGCCTTCSSEEEEEEEEEEECCCSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccccccHHhhhccCceEEeeeeeEEEEEeecCcCCCCcceEEEEEEEEecccceeeehhhhHHHHHHHHHheEeccccc-
Confidence 014 7899999999999999999999999999999999999999999
Q ss_pred cchhccceeeeeeheeehhhhcccCCCCc-ccchhhhhhhHHHHHHHHHHHHHhhhhhccChh
Q psy15134 122 PARVTLGVTSLLTLATQNTQSQQSLPPVS-YVKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPI 183 (259)
Q Consensus 122 ~~Rv~lgit~lLt~~~~~~~~~~~lP~~s-yi~~id~~~~~~~~~vf~slle~~~V~~~~~~~ 183 (259)
++|+++|+|++|++++++..+++.||++| |+|+||+|+++||+++++|++|+++|.++++|.
T Consensus 264 ~eRv~LgiT~LLt~tvfl~~v~~~LP~tS~~vplI~~y~~~~m~~v~~sll~tv~Vl~l~~r~ 326 (461)
T 4aq5_A 264 GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSIIVTVVVINTHHRS 326 (461)
T ss_dssp GGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cceeehhHHHHHHHHHHHHHHHhhcCcccCCcCHHHHHHHHHHHHHHHHHHHHhhheeeeccC
Confidence 59999999999999999999999999999 799999999999999999999999999998643
No 9
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=100.00 E-value=1.8e-38 Score=302.46 Aligned_cols=166 Identities=18% Similarity=0.320 Sum_probs=153.3
Q ss_pred CCcccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEEEEe-----eeeeeeeeec-------------
Q psy15134 14 QNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKI-----KYSICMNAVL------------- 75 (259)
Q Consensus 14 ~~IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m~l-----d~q~c~~~~~------------- 75 (259)
++||+||++++|++++.+|..+..| +.|++||+|.|..|++.+++|+||+ |.|+|++++.
T Consensus 107 ~~IW~PDi~l~N~~d~~~~~~~~~n--v~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~ 184 (493)
T 4aq5_B 107 DDVWQPDIVLMNNNDGSFEITLHVN--VLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQH 184 (493)
T ss_dssp CSSCCCCCEESSCCCSCEESSSSSC--EEECTTSEEEECCEEEEEECCSCTTCSSSTTCCCCEEEEECSSCCBTSCEEEC
T ss_pred ccCccCcEEEecccccccccccccc--eEEecCCCEEEeeeeeeeecccccccCCCccceeEEEEEeeecCccccEEEEe
Confidence 8999999999999999988755544 6799999999999999999999998 8899976431
Q ss_pred ----------------------------------------CCceeeeeEEEeeecccceeEEeeehhhHHHhhheeeEee
Q psy15134 76 ----------------------------------------LGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFW 115 (259)
Q Consensus 76 ----------------------------------------~g~ys~l~~~~~l~R~~~yy~~~~~iP~~liv~ls~~~Fw 115 (259)
++.|+++.+.|++||+++||++++++||++++++||++||
T Consensus 185 ~~~~~~~~~~~~~~~~l~~f~~~~eW~l~~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~ 264 (493)
T 4aq5_B 185 ALDAKGEREVKEIMINQDAFTENGQWSIEHKPSRKNWRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFY 264 (493)
T ss_dssp CCCC---------CCSGGGCCTTCSSBCCCCCCEECCCTTSSSBCCEEEECCCBCCCCSSTTTTHHHHHHHHHHHHHHHH
T ss_pred ccCCCCccceecccccHHHhccccceeeeeeeEEEEeecCCCCccEEEEEEEEEeccceeeehhhhhHHHHHHHHHhEEe
Confidence 1147789999999999999999999999999999999999
Q ss_pred cCCCCccchhccceeeeeeheeehhhhcccCCCCcc-cchhhhhhhHHHHHHHHHHHHHhhhhhccCh
Q psy15134 116 IKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSY-VKAIDIWMSSCSVFVFLSLMEFAVVNNYMGP 182 (259)
Q Consensus 116 l~~~~~~~Rv~lgit~lLt~~~~~~~~~~~lP~~sy-i~~id~~~~~~~~~vf~slle~~~V~~~~~~ 182 (259)
+|+++ ++|+++|+|++|++++++..+++.||++|| +|+||+|+++||+++++|++|+++|.++++|
T Consensus 265 Lp~~s-~eRvsLgiT~LLt~tvfl~~v~~~LP~tS~~vPlI~~y~~~~m~~v~lsll~tv~Vl~l~~r 331 (493)
T 4aq5_B 265 LPPDA-GEKMSLSISALLALTVFLLLLADKVPETSLSVPIIISYLMFIMILVAFSVILSVVVLNLHHR 331 (493)
T ss_dssp STTTC-GGGGTHHHHHHHHHHHHHHHHHHHTTTTTTSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCC-CceEEehHHHHHHHHHHHHHHHhcCCccccCCCchHhHHHHHHHHHHHHHHHHHhheeeecc
Confidence 99997 999999999999999999999999999999 9999999999999999999999999999754
No 10
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=100.00 E-value=5.4e-39 Score=305.72 Aligned_cols=168 Identities=16% Similarity=0.246 Sum_probs=155.1
Q ss_pred CCcccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEEEEe-----eeeeeeeee--------------
Q psy15134 14 QNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKI-----KYSICMNAV-------------- 74 (259)
Q Consensus 14 ~~IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m~l-----d~q~c~~~~-------------- 74 (259)
++||+||++++|++++.+|..+..| +.|++||+|.|..|++.+++|+||+ |.|+|++++
T Consensus 82 ~~IW~PDi~l~N~~d~~~~~~~~~n--v~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~ 159 (488)
T 4aq5_E 82 ELLWLPDVVLENNVDGQFEVAYYAN--VLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQL 159 (488)
T ss_dssp TSSCCCCEECSSSCCSCCBSCSSSC--CCBCTTSEEEECCEEBCEECCCCSSSSSSSSCCCCCEEEEESSSCSSSCCEEC
T ss_pred cCEECCceehhcccccccccccccc--EEEeCCceEEEecceeEEeecccccccCCCcCceeeEEeeeeccccceEEEEe
Confidence 8999999999999999998766655 4699999999999999999999998 888886532
Q ss_pred -----------------------------------------cCCceeeeeEEEeeecccceeEEeeehhhHHHhhheeeE
Q psy15134 75 -----------------------------------------LLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWIS 113 (259)
Q Consensus 75 -----------------------------------------~~g~ys~l~~~~~l~R~~~yy~~~~~iP~~liv~ls~~~ 113 (259)
.+|.|+++.+.|+++|+++||++++++||++++++||++
T Consensus 160 ~~~~~~~~~~~~~d~~~~~~~~eW~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~ls 239 (488)
T 4aq5_E 160 SAEEGEVVEWIHIDPEDFTENGEWTIRHRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLV 239 (488)
T ss_dssp CCSCC-------CGGGSCCTTCSEEEEECCCEEECCCCTTCCCSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcceeeeeccHHHccccceEEEEeeEEEEEEeeeccCCCCCcceEEEEEEEccchhheehhHhHHHHHHHHHHHHH
Confidence 012488999999999999999999999999999999999
Q ss_pred eecCCCCccchhccceeeeeeheeehhhhcccCCCCcc-cchhhhhhhHHHHHHHHHHHHHhhhhhccChh
Q psy15134 114 FWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSY-VKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPI 183 (259)
Q Consensus 114 Fwl~~~~~~~Rv~lgit~lLt~~~~~~~~~~~lP~~sy-i~~id~~~~~~~~~vf~slle~~~V~~~~~~~ 183 (259)
||+|+++.++|+++|+|++|++++++..+++.||++|| +|+||+|+++||+++++|++|+++|+++++|.
T Consensus 240 F~Lp~~a~~eRvsLgIt~LLt~tvfl~~v~~~LP~tS~~vPlI~~y~~~~m~lv~~Sll~tv~Vlnl~~r~ 310 (488)
T 4aq5_E 240 YFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSLVIVTNCVIVLNVSLRT 310 (488)
T ss_dssp HHHHHHSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred hcCCccccCceEEEehHHHHHHHHHHHHHHhhCCccccCccHHHHHHHHHHHHHHHHHHHHhhEEEEEccC
Confidence 99999977999999999999999999999999999998 99999999999999999999999999998654
No 11
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=100.00 E-value=7.6e-38 Score=299.88 Aligned_cols=167 Identities=16% Similarity=0.246 Sum_probs=154.0
Q ss_pred CCcccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEEEEe-----eeeeeeeeec-------------
Q psy15134 14 QNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKI-----KYSICMNAVL------------- 75 (259)
Q Consensus 14 ~~IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m~l-----d~q~c~~~~~------------- 75 (259)
++||+||++++|++++.+|..+..| +.|++||+|.|..|++.+++|+||+ |.|+|++++.
T Consensus 106 ~~IW~PDi~l~N~~d~~~~~~~~~n--v~V~~dG~V~~~~~~~~~ssC~mdl~~FPfD~Q~C~L~f~S~~Y~~~~v~l~~ 183 (522)
T 4aq5_C 106 ELIWIPDIVLQNNNDGQYNVAYFCN--VLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDL 183 (522)
T ss_dssp GGSCCCCEEETTTCSSCCBSCSSCC--EEECSSSEEEECCEEEEEECCCCTTTSCSTTCCEEEEEEEETTCCTTTCCEEC
T ss_pred CCEECCcEeccccccCCccccccce--EEEeCCccEEEEcccccccccccccCcCCCcCceEeEEEecccccCceeEEEe
Confidence 8999999999999999988765555 5799999999999999999999998 8888865320
Q ss_pred ----------------------------------------------CCceeeeeEEEeeecccceeEEeeehhhHHHhhh
Q psy15134 76 ----------------------------------------------LGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVM 109 (259)
Q Consensus 76 ----------------------------------------------~g~ys~l~~~~~l~R~~~yy~~~~~iP~~liv~l 109 (259)
+|.|+++.+.|+++|+++||++++++||++++++
T Consensus 184 ~~~~~~~~~~~~~~~~~d~~~f~~~gEW~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Yii~l~iP~~liv~L 263 (522)
T 4aq5_C 184 MTDTIDGKDYPIEWIIIDPEAFTENGEWEIIHKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFL 263 (522)
T ss_dssp ---------------CCSTTSCCTTCSEEEEECCEEEEECCCSSCSSCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHH
T ss_pred ccCcccccCccceeeeccHHHceecceEEEeeeEEEEEeeeccccCCCCcceEEEEEEEecccceeeeehhhHHHHHHHH
Confidence 1248899999999999999999999999999999
Q ss_pred eeeEeecCCCCccchhccceeeeeeheeehhhhcccCCCCcc-cchhhhhhhHHHHHHHHHHHHHhhhhhccChh
Q psy15134 110 SWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSY-VKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPI 183 (259)
Q Consensus 110 s~~~Fwl~~~~~~~Rv~lgit~lLt~~~~~~~~~~~lP~~sy-i~~id~~~~~~~~~vf~slle~~~V~~~~~~~ 183 (259)
||++||+|++ .++|+++|+|++|++++++..+++.||++|| +|+||+|+++||+++++|++|+++|+++++|.
T Consensus 264 s~lsF~Lp~d-~~eRisLgIT~LLt~tvfl~~v~~~LP~tS~~vPlI~~y~~~~m~lv~lSll~tviVlnl~~r~ 337 (522)
T 4aq5_C 264 AALAFYLPAE-SGEKMSTAICVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVVVNCGIVLNFHFRT 337 (522)
T ss_dssp HHHHTTHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHheeecCCC-cCceEEehHHHHHHHHHHHHHHHhcCCcccCCccHHHHHHHHHHHHHHHHHHHHheEEEEEccC
Confidence 9999999999 6999999999999999999999999999998 99999999999999999999999999998654
No 12
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Probab=99.95 E-value=2.7e-30 Score=211.94 Aligned_cols=140 Identities=21% Similarity=0.279 Sum_probs=110.2
Q ss_pred CCceeeeeEEEeeecccceeEEeeehhhHHHhhheeeEeecCCCCccchhccceeeeeeheeehhhhcccCCCCc-ccch
Q psy15134 76 LGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVS-YVKA 154 (259)
Q Consensus 76 ~g~ys~l~~~~~l~R~~~yy~~~~~iP~~liv~ls~~~Fwl~~~~~~~Rv~lgit~lLt~~~~~~~~~~~lP~~s-yi~~ 154 (259)
.|.|+++.+++++||+++||++|+++||++++++||++||+|+|+ +||+++|+|++|++++++..+++++|++| |+|+
T Consensus 12 ~~~y~~i~~~~~lrR~~~~Y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~LLs~tvfl~~v~~~lP~tS~~vPl 90 (164)
T 2ksr_A 12 DLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDC-GEKMTLCISVLLALTVFLLLISKIVPPTSLDVPL 90 (164)
T ss_dssp -------------CCCTHHHHHHTHHHHHHHHHHHHHHHTSCCCS-HHHHHHHHHHHHHHHHHHHHHHTTCCSSCTTHHH
T ss_pred CCCcceEEEEEEEEEeehheeeeehhhHHHHHHHHhheeEcCCCC-CCeEEEeeehHHHHHHHHHHHHHHCCCCcccCCH
Confidence 468999999999999999999999999999999999999999999 99999999999999999999999999999 8999
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhhhccChhhhhhhccCChhhhccccccccCCCCCCCCCcCCCCCCCCCCccCCCcchhh
Q psy15134 155 IDIWMSSCSVFVFLSLMEFAVVNNYMGPIATKAMKGYSEEDLRNNVDEFKNLDPTRSRSITIPQVPMYPTFCNGREIALY 234 (259)
Q Consensus 155 id~~~~~~~~~vf~slle~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 234 (259)
||+|+.+|++++++|++|+++|+++++|+.... + | . . ..+..|..
T Consensus 91 I~~y~~~~m~~v~~sll~tv~Vl~~~~r~~~~~----~---------------p---------~--~-----~~k~~a~v 135 (164)
T 2ksr_A 91 VGKYLMFTMVLVTFSIVTSVCVLNVHHRSPTTH----T---------------P---------R--G-----GGGYVAMV 135 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHTSSCCCC----S---------------S---------C--C-----SSSSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCC----C---------------C---------C--c-----hhhhHHHH
Confidence 999999999999999999999998875432110 0 0 0 0 01336889
Q ss_pred hhhhhhhhcchhHHHHH
Q psy15134 235 IDKFSRFFFPFSFFVLN 251 (259)
Q Consensus 235 ID~~sRi~FP~~F~~Fn 251 (259)
+||...++|++++++-.
T Consensus 136 ~Dr~~l~~f~~~~~~~t 152 (164)
T 2ksr_A 136 IDRLFLWIFVFVCVFGT 152 (164)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998876433
No 13
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A
Probab=99.95 E-value=1.9e-31 Score=213.41 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=109.0
Q ss_pred eeeeeeee---cCCceeeeeEEEeeecccceeEEeeehhhHHHhhheeeEeecCCCCccchhccceeeeeeheeehhhhc
Q psy15134 67 YSICMNAV---LLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQ 143 (259)
Q Consensus 67 ~q~c~~~~---~~g~ys~l~~~~~l~R~~~yy~~~~~iP~~liv~ls~~~Fwl~~~~~~~Rv~lgit~lLt~~~~~~~~~ 143 (259)
+++|+..+ .+|+|+++.+.|.+||+++||++++++||++++++||++||+|+|+ +||+++|+|++|++++++..++
T Consensus 21 y~cC~~~y~~~~~g~y~~l~~~f~lrR~~~~y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~lLs~tvfl~~v~ 99 (140)
T 2lkg_A 21 DKICKIGTESVEAGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDS-GEKMTESKSVLKSLTEKLKKIV 99 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCSSSCTHHHHHHHHHHHHHHHTHHHHSSSSCCSS-SHHHHHHHHHHHHHHHHHHGGG
T ss_pred ecCCCCCccccCCCcEEEEEEEEEEEEcceeeeehhhhHHHHHHHHHhheeEcCCCC-CCEEEEeeehHHHHHHHHHHHH
Confidence 45787777 7899999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred ccCCCCc-ccchhhhhhhHHHHHHHHHHHHHhhhhhccCh
Q psy15134 144 QSLPPVS-YVKAIDIWMSSCSVFVFLSLMEFAVVNNYMGP 182 (259)
Q Consensus 144 ~~lP~~s-yi~~id~~~~~~~~~vf~slle~~~V~~~~~~ 182 (259)
+++|++| ++|+||+|+.+|++++++|++|+++|.++++|
T Consensus 100 ~~lP~tS~~vPlI~~y~~~~~~~v~~sll~tv~Vln~~~r 139 (140)
T 2lkg_A 100 ELIPSTSSAVPLIGKYMLFTKEFVESSIKITEEVINTHHR 139 (140)
T ss_dssp GTCTTTGGGHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HhCCCccccccHHHHHHHHHHHHHHHHHHHHHhheeeecc
Confidence 9999999 89999999999999999999999999887643
No 14
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}
Probab=99.94 E-value=2.5e-28 Score=195.00 Aligned_cols=125 Identities=19% Similarity=0.208 Sum_probs=108.9
Q ss_pred eeecccceeEEeeehhhHHHhhheeeEeecCCCCccchhccceeeeeeheeehhhhcccCCCCc-ccchhhhhhhHHHHH
Q psy15134 87 NLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVS-YVKAIDIWMSSCSVF 165 (259)
Q Consensus 87 ~l~R~~~yy~~~~~iP~~liv~ls~~~Fwl~~~~~~~Rv~lgit~lLt~~~~~~~~~~~lP~~s-yi~~id~~~~~~~~~ 165 (259)
++||+++||.+|+++||++++++||++||+|+|+ +||+++|+|++|++++++..+++++|++| |+|++|+|+.+|+++
T Consensus 2 ~lrR~~~~y~~~~iiP~~li~~Ls~~~F~lp~~s-~eRv~lgit~lLs~tv~l~~~~~~lP~tS~~vpli~~y~~~~~~~ 80 (137)
T 2lly_A 2 NAEELPLFYTINLIIPCLLISCLTVLVFYLPSEC-GEKITLCISVLLSLTVFLLLITEIIPSTSSVSPSIGEYLLFTMIF 80 (137)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCST-THHHHHHHHHHHHHHHHHHHHHHHCSCCSSSCCSTHHHHHHHHHH
T ss_pred ceEeeehhhhHHHHHHHHHHHHHHHHheeeCCCC-CCeEEEEeeeHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHH
Confidence 5799999999999999999999999999999998 99999999999999999999999999999 799999999999999
Q ss_pred HHHHHHHHhhhhhccChhhhhhhccCChhhhccccccccCCCCCCCCCcCCCCCCCCCCccCCCcchhhhhhhhhhhcch
Q psy15134 166 VFLSLMEFAVVNNYMGPIATKAMKGYSEEDLRNNVDEFKNLDPTRSRSITIPQVPMYPTFCNGREIALYIDKFSRFFFPF 245 (259)
Q Consensus 166 vf~slle~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ID~~sRi~FP~ 245 (259)
+++|++|+++|.++++|+... .+. .+..+||.+.++|++
T Consensus 81 v~~sl~~tv~V~~~~~r~~~~------------------------------~~m-----------p~~~~dr~~lwif~~ 119 (137)
T 2lly_A 81 VTLSIVITVFVLNVHHRSPET------------------------------HTG-----------GGGGIDRIFLWMFII 119 (137)
T ss_dssp HHHHHHHHHHHHHCCSSCSSC------------------------------CSS-----------CSSSHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhHHhcCCcc------------------------------Ccc-----------chHHHHHHHHHHHHH
Confidence 999999999999987532110 000 024799999999999
Q ss_pred hHHHHHHH
Q psy15134 246 SFFVLNIL 253 (259)
Q Consensus 246 ~F~~Fni~ 253 (259)
++++-.+.
T Consensus 120 ~~~~gt~~ 127 (137)
T 2lly_A 120 VCLLGTVG 127 (137)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhhh
Confidence 88766554
No 15
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=99.81 E-value=1.9e-21 Score=138.36 Aligned_cols=65 Identities=54% Similarity=0.867 Sum_probs=59.1
Q ss_pred ccchhccceeeeeeheeehhhhcccCCCCcccchhhhhhhHHHHHHHHHHHHHhhhhhccChhhh
Q psy15134 121 IPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPIAT 185 (259)
Q Consensus 121 ~~~Rv~lgit~lLt~~~~~~~~~~~lP~~syi~~id~~~~~~~~~vf~slle~~~V~~~~~~~~~ 185 (259)
+|+|+++|+|++|+|+++...++.+||++||+|+||+|+++|++|+|+|++|+++|||+.+++++
T Consensus 1 ~paRv~LGittvLtmtt~~~~~~~~lPkVSYikAiDvw~~~C~~FVF~aLlEya~V~y~~r~~~~ 65 (76)
T 1vry_A 1 LPARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALLEYAAVNFVSRKKKK 65 (76)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTTCCCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred CCceEEechHHHHHHHHHhcCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 38999999999999999999999999999999999999999999999999999999999765443
No 16
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B
Probab=99.80 E-value=1.2e-22 Score=174.89 Aligned_cols=91 Identities=23% Similarity=0.309 Sum_probs=87.0
Q ss_pred cceeEEeeehhhHHHhhheeeEeecCCCCccchhccceeeeeeheeehhhhcccCCCCc-ccchhhhhhhHHHHHHHHHH
Q psy15134 92 LGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVS-YVKAIDIWMSSCSVFVFLSL 170 (259)
Q Consensus 92 ~~yy~~~~~iP~~liv~ls~~~Fwl~~~~~~~Rv~lgit~lLt~~~~~~~~~~~lP~~s-yi~~id~~~~~~~~~vf~sl 170 (259)
+.||++++++||+++++++|++||+|+++ +||+++|+|++|++++++..+++.+|++| ++|+||+|+.+||+++++|+
T Consensus 1 pl~Y~~nliiP~~li~~Ls~~~F~Lp~~s-gerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl 79 (227)
T 1oed_A 1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSI 79 (227)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred CeEEEehHHHHHHHHHHHHHHHheeCCCC-CCeEeehHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999 99999999999999999999999999998 89999999999999999999
Q ss_pred HHHhhhhhccChh
Q psy15134 171 MEFAVVNNYMGPI 183 (259)
Q Consensus 171 le~~~V~~~~~~~ 183 (259)
+|+++|.++++|.
T Consensus 80 ~~tv~vln~~~r~ 92 (227)
T 1oed_A 80 IITVVVINTHHRS 92 (227)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHhhhccC
Confidence 9999998887543
No 17
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=99.79 E-value=2.6e-22 Score=175.08 Aligned_cols=90 Identities=22% Similarity=0.325 Sum_probs=86.4
Q ss_pred cceeEEeeehhhHHHhhheeeEeecCCCCccchhccceeeeeeheeehhhhcccCCCCc-ccchhhhhhhHHHHHHHHHH
Q psy15134 92 LGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVS-YVKAIDIWMSSCSVFVFLSL 170 (259)
Q Consensus 92 ~~yy~~~~~iP~~liv~ls~~~Fwl~~~~~~~Rv~lgit~lLt~~~~~~~~~~~lP~~s-yi~~id~~~~~~~~~vf~sl 170 (259)
+.||++++++||+++++++|++||+|+++ +||+++|+|++|++++++..+++.+|++| ++|+||+|+.+||+++++|+
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~ds-gerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl 79 (250)
T 1oed_B 1 PLFYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSV 79 (250)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHheeCCCC-CCeEEehhhHHHHHHHHHHHHHHHCCCCcccCCcHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999 99999999999999999999999999999 89999999999999999999
Q ss_pred HHHhhhhhccCh
Q psy15134 171 MEFAVVNNYMGP 182 (259)
Q Consensus 171 le~~~V~~~~~~ 182 (259)
+++++|.++++|
T Consensus 80 ~~tv~Vln~~~r 91 (250)
T 1oed_B 80 ILSVVVLNLHHR 91 (250)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHhheeeeecc
Confidence 999999887754
No 18
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
Probab=99.79 E-value=3.4e-22 Score=175.27 Aligned_cols=91 Identities=19% Similarity=0.212 Sum_probs=86.8
Q ss_pred cceeEEeeehhhHHHhhheeeEeecCCCCccchhccceeeeeeheeehhhhcccCCCCc-ccchhhhhhhHHHHHHHHHH
Q psy15134 92 LGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVS-YVKAIDIWMSSCSVFVFLSL 170 (259)
Q Consensus 92 ~~yy~~~~~iP~~liv~ls~~~Fwl~~~~~~~Rv~lgit~lLt~~~~~~~~~~~lP~~s-yi~~id~~~~~~~~~vf~sl 170 (259)
++||++++++||+++++++|++||+|+++.+||+++|+|++|++++++..+++.+|++| |+|+||+|+.+||+++++|+
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~~gerv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~sl 80 (260)
T 1oed_E 1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIV 80 (260)
T ss_dssp CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCCeEEeehhHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999996699999999999999999999999999999 89999999999999999999
Q ss_pred HHHhhhhhccCh
Q psy15134 171 MEFAVVNNYMGP 182 (259)
Q Consensus 171 le~~~V~~~~~~ 182 (259)
+++++|.++++|
T Consensus 81 ~~tv~vln~~~r 92 (260)
T 1oed_E 81 MNCVIVLNVSLR 92 (260)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHhheeeeecc
Confidence 999999887754
No 19
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=99.76 E-value=1.6e-21 Score=170.98 Aligned_cols=90 Identities=18% Similarity=0.250 Sum_probs=86.5
Q ss_pred cceeEEeeehhhHHHhhheeeEeecCCCCccchhccceeeeeeheeehhhhcccCCCCc-ccchhhhhhhHHHHHHHHHH
Q psy15134 92 LGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVS-YVKAIDIWMSSCSVFVFLSL 170 (259)
Q Consensus 92 ~~yy~~~~~iP~~liv~ls~~~Fwl~~~~~~~Rv~lgit~lLt~~~~~~~~~~~lP~~s-yi~~id~~~~~~~~~vf~sl 170 (259)
+.||++++++||+++++++|++||+|+++ +||+++|+|++|++++++..+++.+|++| ++|+||+|+.+||+++++|+
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~-gekv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~s~ 79 (260)
T 1oed_C 1 PLFYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVI 79 (260)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCC-CCeEeehHHHHHHHHHHHHHHHHHCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999997 99999999999999999999999999998 79999999999999999999
Q ss_pred HHHhhhhhccCh
Q psy15134 171 MEFAVVNNYMGP 182 (259)
Q Consensus 171 le~~~V~~~~~~ 182 (259)
+++++|.++++|
T Consensus 80 ~~tv~vl~~~~r 91 (260)
T 1oed_C 80 VNCGIVLNFHFR 91 (260)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHheeeeecc
Confidence 999999988764
No 20
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...
Probab=99.70 E-value=1.2e-17 Score=144.02 Aligned_cols=85 Identities=14% Similarity=0.196 Sum_probs=68.6
Q ss_pred CCcccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEE---EEe-eeeeeeeee---------------
Q psy15134 14 QNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIF---VKI-KYSICMNAV--------------- 74 (259)
Q Consensus 14 ~~IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~---m~l-d~q~c~~~~--------------- 74 (259)
++||+||++++|++++.+|.. +..++|++||+|.|+.|++.+++|+ ||+ |.|+|.+++
T Consensus 92 ~~IW~PDi~l~N~~~~~~~~~---~~~v~i~~~G~V~~~~~~~~~~~C~~~~mdl~D~Q~C~l~f~Sw~y~~~~i~l~~~ 168 (228)
T 2wn9_A 92 ADIWTPDITAYSSTRPVQVLS---PQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTD 168 (228)
T ss_dssp GGSCCCCEEESSBSSCCEECS---CCEEEEETEEEEEECCEEEEEEECCCTTTTSTTCEEEEEEEEESSCCTTTEEEECS
T ss_pred HHccCCceecccccccccccc---cceEEEeCCeEEEEeCCEEEEEECCCCCCCCCcCcEeeEEEEeecccccEEEEEec
Confidence 899999999999999988873 8899999999999999999999999 988 899997643
Q ss_pred -------------------------------cCCceeeeeEEEeeecccceeEEeeeh
Q psy15134 75 -------------------------------LLGNFTCIAVVFNLRRRLGYHLFHTYI 101 (259)
Q Consensus 75 -------------------------------~~g~ys~l~~~~~l~R~~~yy~~~~~i 101 (259)
..|.|+++.+.|++||+++||++++++
T Consensus 169 ~~~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~fYii~lil 226 (228)
T 2wn9_A 169 TDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERRAGNGFFRNL 226 (228)
T ss_dssp CSBCBCTTCCTTCSEEEEEEEEEEEEECCSSCSSCEEEEEEEEEEEECC---------
T ss_pred CCccchhhceecCCEEEEEEEEEEEEEeecCCCCCeeEEEEEEEEEEeccceEEEEEE
Confidence 126788999999999999999999875
No 21
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Probab=99.60 E-value=6.6e-16 Score=131.50 Aligned_cols=81 Identities=20% Similarity=0.300 Sum_probs=68.4
Q ss_pred CCcccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEE---EEe-eeeeeeeee---------------
Q psy15134 14 QNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIF---VKI-KYSICMNAV--------------- 74 (259)
Q Consensus 14 ~~IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~---m~l-d~q~c~~~~--------------- 74 (259)
++||+||++++|++++. +.+.+ ..++|++||+|.|+.|++.+++|+ ||+ |.|+|.+.+
T Consensus 80 ~~iW~PDi~~~N~~~~~--~~~~~-~~~~i~~~G~V~~~~~~~~~~~C~~~~mdl~D~Q~C~l~f~S~~y~~~~i~l~~~ 156 (211)
T 1uw6_A 80 SSLWVPDLAAYNAISKP--EVLTP-QLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPT 156 (211)
T ss_dssp GGSCCCCEEETTBCSCC--EECSC-CEEEEETTSEEEECCEEEEEEECCCTTTTSSSCEEEEEEEEESSCCTTTEEEEEC
T ss_pred HHccCCCEeeecccccc--cccee-eEEEEeCCceEEEeCCEEEEEECCCCCCCCCcceEeEEEEEcccccCceEEEEec
Confidence 89999999999999987 45555 889999999999999999999999 988 888887643
Q ss_pred ------------------------------c--CCceeeeeEEEeeecccceeEE
Q psy15134 75 ------------------------------L--LGNFTCIAVVFNLRRRLGYHLF 97 (259)
Q Consensus 75 ------------------------------~--~g~ys~l~~~~~l~R~~~yy~~ 97 (259)
. .|.|+++.+.|+++|+++||++
T Consensus 157 ~~~~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~yyil 211 (211)
T 1uw6_A 157 TENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGRSEIL 211 (211)
T ss_dssp CCSSCTTTTSCTTSSEEEEEEEEEEEEEECTTCSSEEEEEEEEEEEEECCCC---
T ss_pred ccccchhhhcccCCCEEEEeeEEEEEEEEeCCCCCCcceEEEEEEEEEccceeEC
Confidence 1 3567889999999999999975
No 22
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B
Probab=99.59 E-value=3e-15 Score=127.51 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=53.0
Q ss_pred CCcccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEEEEe-----eeeeeeee
Q psy15134 14 QNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKI-----KYSICMNA 73 (259)
Q Consensus 14 ~~IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m~l-----d~q~c~~~ 73 (259)
++||+||++++|++++.+|..+. ..++|++||+|.|+.|++++++|+||+ |.|+|.++
T Consensus 84 ~~iW~PDi~~~N~~~~~~~~~~~--~~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~ 146 (212)
T 2qc1_B 84 EKIWRPDVVLYNNADGDFAIVKF--TKVLLDYTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMK 146 (212)
T ss_dssp GGSCCCCEEECCBTTTSSCEECC--CCEEEETTCEEEECCEEEEEEEEEECCSSSSCCEEEEEEE
T ss_pred hhccCCceeccccccccccccce--eeEEEECCeeEEEEeeeEEEEEccceeecCCCCceEEeEE
Confidence 89999999999999999887543 679999999999999999999999998 89999874
No 23
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*
Probab=99.50 E-value=3.4e-14 Score=122.53 Aligned_cols=83 Identities=13% Similarity=0.229 Sum_probs=65.9
Q ss_pred CCcccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEEEEeeeeeeeeeec------------------
Q psy15134 14 QNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKIKYSICMNAVL------------------ 75 (259)
Q Consensus 14 ~~IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m~ld~q~c~~~~~------------------ 75 (259)
++||+||++++|++++.++.. .+..++|++||+|.|..|++++++|+|-+|.|+|.+++.
T Consensus 92 ~~IW~PDi~l~N~~~~~~~~~--~~~~v~v~~~G~V~~~~~~~~~s~C~mPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~ 169 (230)
T 4afh_A 92 DEIWTPDIKLFNSVDLDMTLD--RTTQAIVFSNGTVLWIPPAVLKVLCVSQDDVDSCHFQFGSWVYSVDEVDIHFMDDKA 169 (230)
T ss_dssp GGSCCCCEEETTCSSSSCEEC--TTSCEEEETTSEEEECCEEEEEEEEEEETTEEEEEEEEEESSCCTTTEEEEEGGGCC
T ss_pred CCEECCcEEEEeccccccccc--ccceEEEEcCCEEEEecCEEEEEECCCCCCcccCCEeeccccccCceEEEEECCCCc
Confidence 899999999999999988763 345689999999999999999999999669999987531
Q ss_pred ----------------------------CCceeeeeEEEeeecccceeEEe
Q psy15134 76 ----------------------------LGNFTCIAVVFNLRRRLGYHLFH 98 (259)
Q Consensus 76 ----------------------------~g~ys~l~~~~~l~R~~~yy~~~ 98 (259)
.+.|+.+.+.|.+||+++||+.+
T Consensus 170 ~~d~~~~~n~W~l~~~~~~~~~~~y~cc~~~y~~i~f~~~irRrpl~~~~~ 220 (230)
T 4afh_A 170 EVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSENGNSTYS 220 (230)
T ss_dssp SCBCTTCCCCCCEEEEEEEEEEECCTTCSSCEEEEEEEEEEECC-------
T ss_pred ccceeeecCcEEEEEEEEEEEEEecCCCCCCccEEEEEEEEEEeechhhcc
Confidence 24578899999999999999875
No 24
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}
Probab=99.47 E-value=3.1e-14 Score=120.43 Aligned_cols=58 Identities=17% Similarity=0.319 Sum_probs=52.8
Q ss_pred cCCcccCCeeEeec-CCccceeecccceEEEEeeCceEEEecCceEEEEEEE-Ee---eeeeeeeee
Q psy15134 13 LQNIWRPDCFFKNA-KKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFV-KI---KYSICMNAV 74 (259)
Q Consensus 13 ~~~IW~PDi~~~N~-~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m-~l---d~q~c~~~~ 74 (259)
.++||+||++++|+ +++.+|.. ..++|++||+|.|+.|++++++|+| |+ |.|+|.+.+
T Consensus 77 ~~~iW~PDi~~~N~~~~~~~~~~----~~v~i~~~G~V~~~~~~~~~~~C~m~dl~~fD~Q~C~l~f 139 (203)
T 2bj0_A 77 VSKMWTPDLSFYNAIAAPELLSA----DRVVVSKDGSVIYVPSQRVRFTCDLINVDTEPGATCRIKV 139 (203)
T ss_dssp GGGSCCCCEEETTCSSCCEECSC----CEEEEETTSEEEECCEEEEEEECCCTTTTSSSCEEEEEEE
T ss_pred hhhccCCCccccccccccccccc----eEEEEeCCcEEEEecceEEEEEccccccCccccceeeEEE
Confidence 48999999999999 99888874 6899999999999999999999999 87 889998765
No 25
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}
Probab=99.45 E-value=7e-14 Score=118.20 Aligned_cols=59 Identities=15% Similarity=0.094 Sum_probs=51.7
Q ss_pred ccCCcccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEEEEe-----eeeeeeeee
Q psy15134 12 WLQNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKI-----KYSICMNAV 74 (259)
Q Consensus 12 ~~~~IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m~l-----d~q~c~~~~ 74 (259)
..++||+||++++|++++.. .++..++|++||+|.|..|++++++|+||+ |.|+|.+.+
T Consensus 67 ~~~~IW~PDi~l~N~~~~~~----~~~~~v~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f 130 (201)
T 3igq_A 67 EPEAIWIPEIRFVNVENARD----ADVVDISVSPDGTVQYLERFSARVLSPLDGRRTESDSQTLHIYL 130 (201)
T ss_dssp CGGGSCCCCEEESSBSSSCE----EEEEEEEECTTCEEEEEEEEEEEEECCCC------CEEEEEEEE
T ss_pred cccCcCccCEEEEccccccc----ccceEEEEeCCCcEEEecceeEEEecCcccccCCCCccEeeEEE
Confidence 45899999999999987653 457899999999999999999999999998 999998764
No 26
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*
Probab=99.38 E-value=3.3e-13 Score=114.28 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=50.3
Q ss_pred CCcccCCeeEeecCC--ccceeecccceEEEEeeCceEEEecCceEEEEEEEEe----eeeeeeeee
Q psy15134 14 QNIWRPDCFFKNAKK--VTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKI----KYSICMNAV 74 (259)
Q Consensus 14 ~~IW~PDi~~~N~~~--~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m~l----d~q~c~~~~ 74 (259)
++||+||++++|+++ +.+|.. .++|++||+|.|..|++++++|+||+ |.|+|.+.+
T Consensus 81 ~~iW~PDi~~~N~~~~~~~~~~~-----~v~v~~~G~V~~~~~~~~~~~C~mdl~fPfD~Q~C~l~f 142 (204)
T 3sq6_A 81 SSLWVPDLAAYNAISKPEVLTPQ-----LALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKF 142 (204)
T ss_dssp GGSCCCCEEETTBSSCCEECSCC-----EEEEETTSEEEECCEEEEEEECCCGGGSSSSCEEEEEEE
T ss_pred HHCcCCCEEeEcccccCCccccc-----EEEEEeCCEEEEecCeeEEEeccccccCCCCCcEEEEEE
Confidence 899999999999998 666652 79999999999999999999999997 789998754
No 27
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}
Probab=99.35 E-value=5.6e-13 Score=113.01 Aligned_cols=58 Identities=16% Similarity=0.226 Sum_probs=51.0
Q ss_pred CCcccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEEEEe-----eeeeeeeeec
Q psy15134 14 QNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKI-----KYSICMNAVL 75 (259)
Q Consensus 14 ~~IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m~l-----d~q~c~~~~~ 75 (259)
++||+||++++|++++.. ...+..++|++||+|.|..|++++++|+||+ | |+|.+++.
T Consensus 82 ~~IW~PDi~l~N~~~~~~---~~~~~~~~v~~~G~V~~~~~~~~~s~C~~d~~~fPfD-Q~C~l~fg 144 (205)
T 4aod_A 82 AEIWTPDIFIFDSVGAPE---IFSDKLARVSQDGTVTYVPQLKVRLSCPLADLKLETG-VTCSLKSG 144 (205)
T ss_dssp GGSCCCCEEETTBSSCCE---ECSCCEEEEETTSEEEECCEEEEEEECCCTTSSSSSC-EEEEEEEE
T ss_pred HhcCcCCEEEEcccccce---eecceEEEEecCCEEEEeccEEEEEEecCccccCCCC-cEEEEEEE
Confidence 899999999999987543 2567789999999999999999999999998 7 99998763
No 28
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}
Probab=99.30 E-value=1.5e-12 Score=110.29 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=52.2
Q ss_pred CCcccCCeeEeecCCccceeecccceEEEEeeCceEEEecCceEEEEEEEEe----eeeeeeeeecC
Q psy15134 14 QNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKI----KYSICMNAVLL 76 (259)
Q Consensus 14 ~~IW~PDi~~~N~~~~~~~~~~~~n~~~~I~~~G~V~~~~~~~~~~~C~m~l----d~q~c~~~~~~ 76 (259)
++||+||++++|+++...+ ..+..++|++||+|.|..|++++++|+||. |.|.|.+++.+
T Consensus 82 ~~IW~PDi~l~N~~~~~~~---~~~~~v~v~~~G~V~~~~~~~~~s~C~~d~~fPfD~Q~C~l~fgS 145 (205)
T 4aoe_A 82 KYIWLPHIEVYNSIGKPGI---HSDQLVRVYKDGTVTFVPQYTIRFSCALENVTTEQGAACTLKFGP 145 (205)
T ss_dssp GGSCCCCCEETTBSSCCEE---CSCCEEEEETTSEEEECCEEEEEEECCCTTSSSSSCEEEEEEEEC
T ss_pred HHhccccEEEecccccccc---ccceEEEEeCCcEEEEeCcEEEEEecccCcCCCccCCeEEEEEEC
Confidence 7899999999999875443 456789999999999999999999999985 88999987643
No 29
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=97.35 E-value=1.3e-05 Score=45.74 Aligned_cols=28 Identities=54% Similarity=0.820 Sum_probs=26.3
Q ss_pred ccchhccceeeeeeheeehhhhcccCCC
Q psy15134 121 IPARVTLGVTSLLTLATQNTQSQQSLPP 148 (259)
Q Consensus 121 ~~~Rv~lgit~lLt~~~~~~~~~~~lP~ 148 (259)
+|+|+++|++++|+++++...++.++|+
T Consensus 1 ~paRv~LGittvLt~tt~~~~~~~~lPk 28 (28)
T 1mot_A 1 APARVGLGITTVLTMTTQSSGSRASLPK 28 (28)
T ss_dssp CCHHHHHHHHHHHHHCCSSSSSSSSCCC
T ss_pred CCceEEEcchhHHHHHHHHhhHhhhCCC
Confidence 3899999999999999999999999996
Done!