RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15134
(259 letters)
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane
protein, transport protein, Cys-loop receptor, LIGA ION
channel, neurotransmitter receptor; HET: NAG IVM LMT
UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A*
3rif_A*
Length = 347
Score = 184 bits (468), Expect = 7e-57
Identities = 83/309 (26%), Positives = 126/309 (40%), Gaps = 93/309 (30%)
Query: 3 EEYRILDVNWLQNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYM------SNCT 56
+ + + IW PD FF N K+ H + PN + +++D T+LY +C
Sbjct: 72 GQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLYSVRISLVLSCP 131
Query: 57 AFIQIF----------------------------------------------VKIKYSIC 70
++Q + + C
Sbjct: 132 MYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSSLPSFQLTNTSTTYC 191
Query: 71 MNAVLLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVT 130
+ G ++C+ L+R ++L YIPS ++V++SW+SFW AIPARVTLGVT
Sbjct: 192 TSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVT 251
Query: 131 SLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPIATKAMKG 190
+LLT+ Q+ LPPVSY+KAID+W+ +C F+F +L+EFA+VN+
Sbjct: 252 TLLTMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHI----------- 300
Query: 191 YSEEDLRNNVDEFKNLDPTRSRSITIPQVPMYPTFCNGREIALYIDKFSRFFFPFSFFVL 250
+I+ +D SR FP FFV
Sbjct: 301 ------------------------------ANAGTTEWNDISKRVDLISRALFPVLFFVF 330
Query: 251 NILYWTSFL 259
NILYW+ F
Sbjct: 331 NILYWSRFG 339
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein,
transport protei; HET: LMT; 2.60A {Gloeobacter
violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A*
3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A*
3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A
...
Length = 321
Score = 173 bits (442), Expect = 4e-53
Identities = 42/309 (13%), Positives = 86/309 (27%), Gaps = 101/309 (32%)
Query: 2 SEEYRILDVNWLQNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYM------SNC 55
+ + IW P+ F N + ++ + + D T+ Y+
Sbjct: 61 VRSGVRVKTYEPEAIWIPEIRFVNVENARDADVV----DISVSPDGTVQYLERFSARVLS 116
Query: 56 TAFIQIF------------------VKIKYSICMNAVLLGN------------------- 78
+ + I ++ + V +
Sbjct: 117 PLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPA 176
Query: 79 --------FTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVT 130
+ + + R+ ++ + +P I+ +SW +FW + A VTL V+
Sbjct: 177 NFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFWS--TSYEANVTLVVS 234
Query: 131 SLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPIATKAMKG 190
+L+ N + LP Y+ + +F F++++E V +
Sbjct: 235 TLIAHIAFNILVETCLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQH------------- 281
Query: 191 YSEEDLRNNVDEFKNLDPTRSRSITIPQVPMYPTFCNGREIALYIDKFSRFFFPFSFFVL 250
Y + A I + SR FP F +
Sbjct: 282 -------------------------------YLKVESQPARAASITRASRIAFPVVFLLA 310
Query: 251 NILYWTSFL 259
NI+ F
Sbjct: 311 NIILAFLFF 319
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
membrane, transport protein; HET: ACH MES; 2.91A
{Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
2vl0_A 2yks_A
Length = 322
Score = 160 bits (408), Expect = 4e-48
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Query: 77 GNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLA 136
F+ I V + R Y+L+ +P LI+ SW FW+ E+ R+ T +LT+
Sbjct: 186 NEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMLTVV 243
Query: 137 TQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYM 180
+ LP + Y ID + + +F +++ ++
Sbjct: 244 AYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFAHHRQ 287
Score = 45.4 bits (108), Expect = 7e-06
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 8 LDVNWLQNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYM 52
++ +W P F N N L L+ D ++Y
Sbjct: 63 IERWINNGLWVPALEFINVV----GSPDTGNKRLMLFPDGRVIYN 103
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third
transmembrane domain, membrane protein; NMR {Homo
sapiens} SCOP: j.35.1.1
Length = 76
Score = 83.8 bits (207), Expect = 3e-21
Identities = 35/60 (58%), Positives = 48/60 (80%)
Query: 121 IPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYM 180
+PARV LG+T++LTL TQ++ S+ SLP VSYVKAIDIW++ C +FVF +L+E+A VN
Sbjct: 1 LPARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALLEYAAVNFVS 60
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane
domain, transport PROT; NMR {Homo sapiens}
Length = 137
Score = 49.8 bits (119), Expect = 4e-08
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 87 NLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSL 146
N ++ + IP LI ++ + F++ E ++TL ++ LL+L + +
Sbjct: 2 NAEELPLFYTINLIIPCLLISCLTVLVFYLPSEC-GEKITLCISVLLSLTVFLLLITEII 60
Query: 147 PPVS-YVKAIDIWMSSCSVFVFLSLMEFAVVNNY 179
P S +I ++ +FV LS++ V N
Sbjct: 61 PSTSSVSPSIGEYLLFTMIFVTLSIVITVFVLNV 94
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 51.0 bits (122), Expect = 1e-07
Identities = 18/116 (15%), Positives = 42/116 (36%), Gaps = 5/116 (4%)
Query: 65 IKYSICMNAVLLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPAR 124
+ +F I ++R+ +++ + P LI + + +++ +A +
Sbjct: 188 NWQLTKDD----IDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQK 243
Query: 125 VTLGVTSLLTLATQNTQSQQSLPPVS-YVKAIDIWMSSCSVFVFLSLMEFAVVNNY 179
TL ++ LL Q +P S V I ++ + + +V N
Sbjct: 244 CTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSLVIVTNCVIVLNV 299
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport
protein; 2.30A {Gloeobacter violaceus}
Length = 201
Score = 47.7 bits (114), Expect = 6e-07
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 2 SEEYRILDVNWLQNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYM 52
+ + IW P+ F N + ++ + + D T+ Y+
Sbjct: 57 VRSGVRVKTYEPEAIWIPEIRFVNVENARDADVV----DISVSPDGTVQYL 103
Score = 35.0 bits (81), Expect = 0.012
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 77 GNFTCIAVVFNLRRRLGYHLFH 98
+ + + R+ G+H H
Sbjct: 179 RLESKLDYQLRISRQGGHHHHH 200
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 48.7 bits (116), Expect = 7e-07
Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 65 IKYSICMNAVLLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPAR 124
+ Y+ C + + I F ++R Y + + IP L ++ + F++ ++ +
Sbjct: 188 VYYTCCPDT----PYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEK 242
Query: 125 VTLGVTSLLTLATQNTQSQQSLPPVS-YVKAIDIWMSSCSVFVFLSLMEFAVVNNY 179
+TL ++ LL+L + +P S V I +M +FV S++ VV N
Sbjct: 243 MTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSIIVTVVVINT 298
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic
acetylcholine receptors, transmembrane domain, HFI
junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Length = 164
Score = 46.8 bits (111), Expect = 8e-07
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 82 IAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQ 141
+ N RR+ ++ + IP LI ++ + F++ + ++TL ++ LL L
Sbjct: 18 LYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDC-GEKMTLCISVLLALTVFLLL 76
Query: 142 SQQSLPPVS-YVKAIDIWMSSCSVFVFLSLMEFAVVNNY 179
+ +PP S V + ++ V V S++ V N
Sbjct: 77 ISKIVPPTSLDVPLVGKYLMFTMVLVTFSIVTSVCVLNV 115
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR
{Torpedo marmorata} PDB: 2lkh_A
Length = 140
Score = 44.9 bits (106), Expect = 3e-06
Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 8/102 (7%)
Query: 85 VFNLRRRLGYH---LFHTY---IPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQ 138
+ L + G L+ P ++ + F++ ++ ++T + L +L +
Sbjct: 36 LIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDS-GEKMTESKSVLKSLTEK 94
Query: 139 NTQSQQSLPPVS-YVKAIDIWMSSCSVFVFLSLMEFAVVNNY 179
+ + +P S V I +M FV S+ V N
Sbjct: 95 LKKIVELIPSTSSAVPLIGKYMLFTKEFVESSIKITEEVINT 136
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_E
Length = 488
Score = 47.0 bits (111), Expect = 3e-06
Identities = 18/116 (15%), Positives = 42/116 (36%), Gaps = 5/116 (4%)
Query: 65 IKYSICMNAVLLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPAR 124
+ +F I ++R+ +++ + P LI + + +++ +A +
Sbjct: 195 NWQLTKDD----IDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQK 250
Query: 125 VTLGVTSLLTLATQNTQSQQSLPPVS-YVKAIDIWMSSCSVFVFLSLMEFAVVNNY 179
TL ++ LL Q +P S V I ++ + + +V N
Sbjct: 251 CTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSLVIVTNCVIVLNV 306
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 46.4 bits (110), Expect = 3e-06
Identities = 21/103 (20%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 78 NFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLAT 137
++ + ++R+ +++ +T +P LI +++ + F++ P+A +++L +++LL L
Sbjct: 194 SYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDA-GEKMSLSISALLALTV 252
Query: 138 QNTQSQQSLPPVS-YVKAIDIWMSSCSVFVFLSLMEFAVVNNY 179
+P S V I ++ + V S++ VV N
Sbjct: 253 FLLLLADKVPETSLSVPIIISYLMFIMILVAFSVILSVVVLNL 295
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 369
Score = 45.7 bits (108), Expect = 6e-06
Identities = 18/95 (18%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 86 FNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQS 145
+RR+ +++ + P LI ++ ++F++ E+ +++ + LL A + Q
Sbjct: 204 LIIRRKPLFYVINFITPCVLISFLAALAFYLPAES-GEKMSTAICVLLAQAVFLLLTSQR 262
Query: 146 LPPVS-YVKAIDIWMSSCSVFVFLSLMEFAVVNNY 179
LP + V I ++ V ++ +V N+
Sbjct: 263 LPETALAVPLIGKYLMFIMSLVTGVVVNCGIVLNF 297
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_A
Length = 461
Score = 44.2 bits (104), Expect = 2e-05
Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 65 IKYSICMNAVLLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPAR 124
+ Y+ C + + I F ++R Y + + IP L ++ + F++ ++ +
Sbjct: 212 VYYTCCPDT----PYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEK 266
Query: 125 VTLGVTSLLTLATQNTQSQQSLPPVS-YVKAIDIWMSSCSVFVFLSLMEFAVVNNY 179
+TL ++ LL+L + +P S V I +M +FV S++ VV N
Sbjct: 267 MTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSIIVTVVVINT 322
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain,
micelles, membrane protein; NMR {Homo sapiens} SCOP:
j.35.1.1
Length = 28
Score = 39.3 bits (91), Expect = 2e-05
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 122 PARVTLGVTSLLTLATQNTQSQQSLP 147
PARV LG+T++LT+ TQ++ S+ SLP
Sbjct: 2 PARVGLGITTVLTMTTQSSGSRASLP 27
>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_B
Length = 493
Score = 43.6 bits (102), Expect = 4e-05
Identities = 21/95 (22%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 86 FNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQS 145
++R+ +++ +T +P LI +++ + F++ P+A +++L +++LL L
Sbjct: 235 LIIQRKPLFYIVYTIVPCILISILAILVFYLPPDA-GEKMSLSISALLALTVFLLLLADK 293
Query: 146 LPPVS-YVKAIDIWMSSCSVFVFLSLMEFAVVNNY 179
+P S V I ++ + V S++ VV N
Sbjct: 294 VPETSLSVPIIISYLMFIMILVAFSVILSVVVLNL 328
>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_C
Length = 522
Score = 42.1 bits (98), Expect = 1e-04
Identities = 18/95 (18%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 86 FNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQS 145
+RR+ +++ + P LI ++ ++F++ E+ +++ + LL A + Q
Sbjct: 240 LIIRRKPLFYVINFITPCVLISFLAALAFYLPAES-GEKMSTAICVLLAQAVFLLLTSQR 298
Query: 146 LPPVS-YVKAIDIWMSSCSVFVFLSLMEFAVVNNY 179
LP + V I ++ V ++ +V N+
Sbjct: 299 LPETALAVPLIGKYLMFIMSLVTGVVVNCGIVLNF 333
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1
Length = 260
Score = 41.1 bits (95), Expect = 2e-04
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 94 YHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVS-YV 152
+++ + P LI + + +++ +A + TL ++ LL Q +P S V
Sbjct: 3 FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 62
Query: 153 KAIDIWMSSCSVFVFLSLMEFAVVNNY 179
I ++ L +M +V N
Sbjct: 63 PLIGKYLIFVMFVSMLIVMNCVIVLNV 89
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 4e-04
Identities = 39/243 (16%), Positives = 76/243 (31%), Gaps = 102/243 (41%)
Query: 8 LDV-NWLQNIWRPDCFFKNAKKVTFHEMSIPNH-YLWLYHDKTLLYMSNCTAFIQIFVKI 65
L++ WL+N P + P+ YL + I
Sbjct: 213 LNILEWLEN---PS--------------NTPDKDYL-------------LSIPI------ 236
Query: 66 KYSICMNAVL-LGNF--TCIAVVFNLRRRLGYH---LFHTY---------IPSALIV--V 108
S + V+ L ++ T + LG+ L + +A+ +
Sbjct: 237 --SCPLIGVIQLAHYVVTA--------KLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 109 MSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFL 168
SW SF+ + R + V + + SLPP
Sbjct: 287 DSWESFF---VS--VRKAITVLFFIGVRCYEAYPNTSLPP-------------------- 321
Query: 169 SLMEFAVVNN--YMGPIATKAMKGYSEEDLRNNVDEFKNLDPTRSRSITIPQVPMYPTFC 226
S++E ++ NN P+ ++ ++E +++ V++ N + + I V
Sbjct: 322 SILEDSLENNEGVPSPML--SISNLTQEQVQDYVNKT-NSHLPAGKQVEISLV------- 371
Query: 227 NGR 229
NG
Sbjct: 372 NGA 374
Score = 37.3 bits (86), Expect = 0.005
Identities = 30/154 (19%), Positives = 48/154 (31%), Gaps = 49/154 (31%)
Query: 50 LYMSNCTAFIQIF------VKIKYSICMNAVLLGNFTCIAVVFN------LRRRLGYHLF 97
LY A ++ K Y + +++ N + + F +R +F
Sbjct: 1635 LY-KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 98 HTYIPSALIVVMSWISFWIKPEAIPARVTLGVTS--------LLTLATQNTQSQQSLPP- 148
T + L K E I + TS LL+ TQ TQ P
Sbjct: 1694 ETIVDGKL-----------KTEKIFKEINEHSTSYTFRSEKGLLSA-TQFTQ------PA 1735
Query: 149 ---VSYVKAIDIWMS-----SCSVFVFLSLMEFA 174
+ A + S + + F SL E+A
Sbjct: 1736 LTLMEKA-AFEDLKSKGLIPADATFAGHSLGEYA 1768
Score = 33.5 bits (76), Expect = 0.065
Identities = 39/249 (15%), Positives = 65/249 (26%), Gaps = 109/249 (43%)
Query: 1 MS-EEYRILDVNWLQNIW-RPDCFFK-------------NAKKVTFHE-----MSIPNHY 40
M + Y+ Q++W R D FK N +T H I +Y
Sbjct: 1631 MGMDLYKTSKA--AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY 1688
Query: 41 ----------------------------LWLYHDKTLLYMSNCTAFIQ--IFVKIKYSIC 70
+K LL + T F Q + +
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL---SATQFTQPALTL---MEKA 1742
Query: 71 MNAVL----------------LGNFT---CIAVVFNL-------RRRLGYHLFHTYIP-- 102
L LG + +A V ++ R G +P
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR-G-MTMQVAVPRD 1800
Query: 103 -------SALIVVMSWISFWIKPEAIP---ARVTLGVTSLLTLATQNTQSQQSLPPVSYV 152
+ + ++ EA+ RV L+ + N ++QQ YV
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ------YV 1854
Query: 153 -----KAID 156
+A+D
Sbjct: 1855 AAGDLRALD 1863
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A
1eq8_A
Length = 260
Score = 39.1 bits (90), Expect = 6e-04
Identities = 16/87 (18%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 94 YHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVS-YV 152
+++ + P LI ++ ++F++ E+ +++ ++ LL A + Q LP + V
Sbjct: 3 FYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61
Query: 153 KAIDIWMSSCSVFVFLSLMEFAVVNNY 179
I ++ V ++ +V N+
Sbjct: 62 PLIGKYLMFIMSLVTGVIVNCGIVLNF 88
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A
2k59_B
Length = 227
Score = 39.0 bits (90), Expect = 7e-04
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 94 YHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVS-YV 152
Y + + IP L ++ + F++ ++ ++TL ++ LL+L + +P S V
Sbjct: 3 YFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61
Query: 153 KAIDIWMSSCSVFVFLSLMEFAVVNNY 179
I +M +FV S++ VV N
Sbjct: 62 PLIGKYMLFTMIFVISSIIITVVVINT 88
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Length = 250
Score = 38.0 bits (87), Expect = 0.002
Identities = 20/87 (22%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 94 YHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVS-YV 152
+++ +T IP LI +++ + F++ P+A +++L +++LL + +P S V
Sbjct: 3 FYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSV 61
Query: 153 KAIDIWMSSCSVFVFLSLMEFAVVNNY 179
I ++ + V S++ VV N
Sbjct: 62 PIIIRYLMFIMILVAFSVILSVVVLNL 88
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.098
Identities = 45/309 (14%), Positives = 87/309 (28%), Gaps = 108/309 (34%)
Query: 15 NIWRPDCF---------FKNAKKVTFHEM--------------------SIPNHYLWLYH 45
N+ R + + AK V + + WL
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN- 188
Query: 46 DKTLLYMSNCT---AFIQIFVKIKYSICMNAVLLGNFTC-IAVVFN-LRRRLGYHLFHTY 100
+ NC +++ K+ Y I N + + I + + ++ L L
Sbjct: 189 ------LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 101 IPSALIV---VMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPP--VSYVKAI 155
+ L+V V +A A L LLT T+ Q L +++
Sbjct: 243 YENCLLVLLNV--Q-----NAKAWNA-FNLSCKILLT--TRFKQVTDFLSAATTTHISLD 292
Query: 156 DIWMS-----SCSVFV-FL-----SLMEFAVVNNYMGPIATKAMKGYSEEDLRNNVDEFK 204
M+ S+ + +L L + N P ++ E +R+ + +
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN---PRRL-SIIA---ESIRDGLATWD 345
Query: 205 N--------LDPTRSRSITIPQVPMYPTFCNGREIALYIDKFSRFFFPFSFF-------- 248
N L S+ L ++ + F S F
Sbjct: 346 NWKHVNCDKLTTIIESSLN----------------VLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 249 -VLNILYWT 256
+L+++ W
Sbjct: 390 ILLSLI-WF 397
Score = 30.2 bits (67), Expect = 0.76
Identities = 24/172 (13%), Positives = 50/172 (29%), Gaps = 52/172 (30%)
Query: 88 LRRRLGYHLF-----HTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQS 142
R+ + +IP+ L+ ++ W + ++ V + + Q +S
Sbjct: 371 YRKM--FDRLSVFPPSAHIPTILLSLI-W---FDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 143 QQSLPPVSYVKAIDIWMSSCSVFVFLSLMEFAVVNNYMGPIATKAMKGYSEEDLRNNVDE 202
S+P I++ + ++V++Y K + +DL
Sbjct: 425 TISIP--------SIYLELKVKLENEYALHRSIVDHY------NIPKTFDSDDL------ 464
Query: 203 FKNLDPTRSRSITIPQVPMYPTFCN-------GREIALYIDKFSRFFFPFSF 247
P + Y F + E + F F F F
Sbjct: 465 ------------IPPYLDQY--FYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 32.1 bits (74), Expect = 0.20
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 74 VLLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVV 108
VLL T A + NL R +TYI +I
Sbjct: 14 VLLNQITENAFIENLTMRHKSDNIYTYIGDVVIST 48
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 27.6 bits (62), Expect = 5.6
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 83 AVVFNLRRRLGYHLFHTYIPSALIVV 108
++ N++ R +TY+ + LI V
Sbjct: 68 TLLHNIKVRYSKDRIYTYVANILIAV 93
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 27.5 bits (61), Expect = 6.1
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 83 AVVFNLRRRLGYHLFHTYIPSALIVV 108
+V+ NLR R L +TY +V+
Sbjct: 98 SVLHNLRERYFSGLIYTYSGLFCVVI 123
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.139 0.449
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,107,680
Number of extensions: 231876
Number of successful extensions: 551
Number of sequences better than 10.0: 1
Number of HSP's gapped: 537
Number of HSP's successfully gapped: 45
Length of query: 259
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 167
Effective length of database: 4,133,061
Effective search space: 690221187
Effective search space used: 690221187
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.3 bits)