RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15134
(259 letters)
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 260
Score = 81.8 bits (201), Expect = 4e-19
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 94 YHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVS-YV 152
+++ + P LI + + +++ +A + TL ++ LL Q +P S V
Sbjct: 3 FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 62
Query: 153 KAIDIWMSSCSVFVFLSLMEFAVVNNY 179
I ++ L +M +V N
Sbjct: 63 PLIGKYLIFVMFVSMLIVMNCVIVLNV 89
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 250
Score = 77.5 bits (190), Expect = 1e-17
Identities = 20/87 (22%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 94 YHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVS-YV 152
+++ +T IP LI +++ + F++ P+A +++L +++LL + +P S V
Sbjct: 3 FYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSV 61
Query: 153 KAIDIWMSSCSVFVFLSLMEFAVVNNY 179
I ++ + V S++ VV N
Sbjct: 62 PIIIRYLMFIMILVAFSVILSVVVLNL 88
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 260
Score = 75.6 bits (185), Expect = 8e-17
Identities = 16/87 (18%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 94 YHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVS-YV 152
+++ + P LI ++ ++F++ E+ +++ ++ LL A + Q LP + V
Sbjct: 3 FYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61
Query: 153 KAIDIWMSSCSVFVFLSLMEFAVVNNY 179
I ++ V ++ +V N+
Sbjct: 62 PLIGKYLMFIMSLVTGVIVNCGIVLNF 88
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 227
Score = 73.2 bits (179), Expect = 3e-16
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 94 YHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVS-YV 152
Y + + IP L ++ + F++ ++ ++TL ++ LL+L + +P S V
Sbjct: 3 YFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61
Query: 153 KAIDIWMSSCSVFVFLSLMEFAVVNNY 179
I +M +FV S++ VV N
Sbjct: 62 PLIGKYMLFTMIFVISSIIITVVVINT 88
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 28.5 bits (63), Expect = 0.86
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 74 VLLGNFTCIAVVFNLRRRLGYHLFHTYIPSALIVV 108
VLL T A + NL R +TYI +I
Sbjct: 6 VLLNQITENAFIENLTMRHKSDNIYTYIGDVVIST 40
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 28.1 bits (62), Expect = 1.1
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 83 AVVFNLRRRLGYHLFHTYIPSALIVV 108
AV NLR R L +TY L+ V
Sbjct: 54 AVFHNLRVRYNQDLIYTYSGLFLVAV 79
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 28.2 bits (62), Expect = 1.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 83 AVVFNLRRRLGYHLFHTYIPSALIVV 108
+V+ NLR R L +TY +V+
Sbjct: 20 SVLHNLRERYFSGLIYTYSGLFCVVI 45
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 28.1 bits (62), Expect = 1.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 83 AVVFNLRRRLGYHLFHTYIPSALIVV 108
+V++NLR R L +TY I V
Sbjct: 50 SVLYNLRSRYTSGLIYTYSGLFCIAV 75
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 27.8 bits (61), Expect = 1.5
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 83 AVVFNLRRRLGYHLFHTYIPSALIVV 108
AV++NL+ R + +TY + V
Sbjct: 52 AVLYNLKERYAAWMIYTYSGLFCVTV 77
>d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 218
Score = 26.8 bits (58), Expect = 2.5
Identities = 4/28 (14%), Positives = 11/28 (39%)
Query: 95 HLFHTYIPSALIVVMSWISFWIKPEAIP 122
H F+ + + ++ + E +P
Sbjct: 189 HFFNGKVDELMGECEDYLDRRLNGELVP 216
>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus
influenzae [TaxId: 727]}
Length = 241
Score = 26.6 bits (58), Expect = 2.9
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 7 ILDVNWLQNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSNCTAFIQIFVKIK 66
+D++ I F + E S+ + + + TL + V+
Sbjct: 137 DVDIHPAAKIGHGIMFDHA-TGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREG 195
Query: 67 YSICMNAVLLGNFT 80
I A +LGN
Sbjct: 196 VMIGAGAKILGNIE 209
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 273
Score = 26.5 bits (58), Expect = 3.6
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
Query: 186 KAMKGYSEEDLRNNVDEFKNLDPTRSRSITIPQVPMYPTFCNGREIA 232
+ S++ L++ EFK R + F RE +
Sbjct: 31 GDYENLSDDALKHKTIEFKE----RLEKGATTDDLLVEAFAVVREAS 73
>d1ifra_ b.1.16.1 (A:) Lamin A/C globular tail domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 113
Score = 24.9 bits (54), Expect = 6.7
Identities = 11/48 (22%), Positives = 18/48 (37%)
Query: 121 IPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFL 168
P + TL ++T+ + S P KA + W S+ L
Sbjct: 52 FPPKFTLKAGQVVTIWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTAL 99
>d1wmxa_ b.18.1.24 (A:) Endoglucanase CelJ {Clostridium thermocellum
[TaxId: 1515]}
Length = 173
Score = 24.9 bits (54), Expect = 8.0
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 5/79 (6%)
Query: 110 SWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDIWMSSCSVFVFLS 169
++ F IK + +G + + + +YV W V +
Sbjct: 78 GYLEFDIKGKEGGEDFVIGFRDKVYERVYGLEIDVTTVISNYVTVTTDWQH-----VKIP 132
Query: 170 LMEFAVVNNYMGPIATKAM 188
L + +NN P + +
Sbjct: 133 LRDLMKINNGFDPSSVTCL 151
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.329 0.139 0.449
Gapped
Lambda K H
0.267 0.0498 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,039,435
Number of extensions: 47047
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 21
Length of query: 259
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,268,006
Effective search space: 223169056
Effective search space used: 223169056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.4 bits)