BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15135
(1000 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 90/218 (41%), Gaps = 53/218 (24%)
Query: 683 PEERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCV-CGDGFNFNVSLKVHMAKCAFYL 740
P E+P C CGK+F ++L H RTH E+ YKC CG F+ L H
Sbjct: 17 PGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH-------- 68
Query: 741 KSLEKEGESDHGGYETSSLCYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAE 800
+ H G E C CG R+ L+ H R GE
Sbjct: 69 -------QRTHTG-EKPYKCPECGKSFSQRANLRAHQRTHTGE----------------- 103
Query: 801 VVHLAIHKKHSHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTF 860
+ + CP CGK F++ A L+ H + H EK Y C C K F+
Sbjct: 104 --------------KPYACPECGKSFSQLAHLRAHQR----THTGEKPYKCPECGKSFSR 145
Query: 861 YNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNS 898
+ L H R HT EKPYKC +CG +F+ +L H+ +
Sbjct: 146 EDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRT 183
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 83/200 (41%), Gaps = 17/200 (8%)
Query: 81 VCEICSARVVNLAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEV 140
+ E S+ V A + +P + C C K F R+ L H + H E P +C
Sbjct: 1 ISEFGSSSSVAQAALEPGEKP--YACPECGKSFSRSDHLAEHQR-THTGEKPY---KCPE 54
Query: 141 CGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICGFYHKHKKMIYRHIKEHIEPKKQE 200
CGK+F K+ L RH RTH E+ Y C CG + + H + H K
Sbjct: 55 CGKSFSDKKDLTRHQRTHTGEKPYK-------CPECGKSFSQRANLRAHQRTHTGEKPYA 107
Query: 201 KKVCDICSAEVIHLGTHQKVAHSGVTYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFV 260
C +++ HL HQ+ Y C C F+R ++ H +T H EK +
Sbjct: 108 CPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRT----HTGEKPYK 163
Query: 261 CQYCNKEFPFQGYLNKHMKT 280
C C K F + LN H +T
Sbjct: 164 CPECGKSFSRRDALNVHQRT 183
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 81/176 (46%), Gaps = 15/176 (8%)
Query: 561 GEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHG 620
GE+ + C C F + L H RT EKP K C C K F+ + LT H ++ H
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYK---CPECGKSFSDKKDLTRH-QRTHT 73
Query: 621 GGQTDYVREKEVCEICSARVVNLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVH 678
G + E C ++ NL H+ H E P + C C K F + LR H + H
Sbjct: 74 GEKPYKCPE---CGKSFSQRANLRAHQRTHTGEKP-YACPECGKSFSQLAHLRAHQR-TH 128
Query: 679 LTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYKCV-CGDGFNFNVSLKVHM 733
E P +C CGK+F ++ L H RTH E+ YKC CG F+ +L VH
Sbjct: 129 TGEKPY---KCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQ 181
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 8/140 (5%)
Query: 382 CYYCGYFNGHKKMIYLHIKDHVAPKKREMKICDICCAEVLHLQQHQKAAHSGVCYDCTFC 441
C CG KK + H + H K + C ++ +L+ HQ+ Y C C
Sbjct: 52 CPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPEC 111
Query: 442 GKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYK 501
GK F++ A L H + H E+ + C C K F L H R H+ + PYK
Sbjct: 112 GKSFSQLAHLRAHQRT----HTGEKPYKCPECGKSFSREDNLHTHQRTHTGEK----PYK 163
Query: 502 CTACNAAFNTKSALNVHRKT 521
C C +F+ + ALNVH++T
Sbjct: 164 CPECGKSFSRRDALNVHQRT 183
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 21/185 (11%)
Query: 132 PEERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICGFYHKHKKMIYRHI 190
P E+P C CGK+F ++L H RTH E+ Y C CG KK + RH
Sbjct: 17 PGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYK-------CPECGKSFSDKKDLTRHQ 69
Query: 191 KEHIEPKKQEKKVCDICSAEVIHLGTHQKVAHSGVTYNCKFCSMKFTRVGQMNIHIKTVH 250
+ H K + C ++ +L HQ+ Y C C F+++ + H +T
Sbjct: 70 RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT-- 127
Query: 251 LKHMLEKKFVCQYCNKEFPFQGYLNKHMKTXXXXXXXXXXXXXVTYTCKQCNLTFTNKHL 310
H EK + C C K F + L+ H +T Y C +C +F+ +
Sbjct: 128 --HTGEKPYKCPECGKSFSREDNLHTHQRTHTGEK---------PYKCPECGKSFSRRDA 176
Query: 311 FRNHK 315
H+
Sbjct: 177 LNVHQ 181
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 80/194 (41%), Gaps = 21/194 (10%)
Query: 3 IELAYSVREEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTL 62
+ A E+ + C C F + L H RT EKP K C C K F+ + LT
Sbjct: 11 AQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYK---CPECGKSFSDKKDLTR 67
Query: 63 HIKQMHGGGQTDYVREKEVCEICSARVVNLAEHKLCH--EPPRFTCEYCVKPFRRTQELR 120
H ++ H G + E C ++ NL H+ H E P + C C K F + LR
Sbjct: 68 H-QRTHTGEKPYKCPE---CGKSFSQRANLRAHQRTHTGEKP-YACPECGKSFSQLAHLR 122
Query: 121 NHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICGFYH 180
H + H E P +C CGK+F ++ L H RTH E+ Y C CG
Sbjct: 123 AHQR-THTGEKPY---KCPECGKSFSREDNLHTHQRTHTGEKPYK-------CPECGKSF 171
Query: 181 KHKKMIYRHIKEHI 194
+ + H + H
Sbjct: 172 SRRDALNVHQRTHT 185
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 81/245 (33%), Gaps = 79/245 (32%)
Query: 465 EQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKTCPN 524
E+ + C C K F +L H R H+ + PYKC C +F+ K L H++T
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTGEK----PYKCPECGKSFSDKKDLTRHQRT--- 71
Query: 525 LELLNRDLLPNQTGTDDEKKLEQKEMAKKPTVTEPAGEEAFTCRICQAVFDKYVRLCGHL 584
GE+ + C C F + L H
Sbjct: 72 ----------------------------------HTGEKPYKCPECGKSFSQRANLRAHQ 97
Query: 585 RTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVVNLA 644
RT EKP C C K F+ A L H + G
Sbjct: 98 RTHTGEKP---YACPECGKSFSQLAHLRAHQRTHTG------------------------ 130
Query: 645 EHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRR 704
E P + C C K F R L H + H E P +C CGK+F ++ L
Sbjct: 131 ------EKP-YKCPECGKSFSREDNLHTHQR-THTGEKPY---KCPECGKSFSRRDALNV 179
Query: 705 HMRTH 709
H RTH
Sbjct: 180 HQRTH 184
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 68/197 (34%), Gaps = 32/197 (16%)
Query: 296 YTCKQCNLTFTNKHLFRNHKLFEADEFFDGEVPLYXXXXXXXXXXXXXXXXXXXWQCRHC 355
Y C +C +F+ R+ L E GE P ++C C
Sbjct: 22 YACPECGKSFS-----RSDHLAEHQRTHTGEKP---------------------YKCPEC 55
Query: 356 PLKHRSHDLLLRHYTKEHGGYDWASVCYYCGYFNGHKKMIYLHIKDHVAPKKREMKICDI 415
L RH G + C CG + + H + H K C
Sbjct: 56 GKSFSDKKDLTRHQRTHTGEKPYK--CPECGKSFSQRANLRAHQRTHTGEKPYACPECGK 113
Query: 416 CCAEVLHLQQHQKAAHSGVCYDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNK 475
+++ HL+ HQ+ Y C CGK F+R+ L+ H + H E+ + C C K
Sbjct: 114 SFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRT----HTGEKPYKCPECGK 169
Query: 476 DFPFMKYLKRHLRVHSN 492
F L H R H+
Sbjct: 170 SFSRRDALNVHQRTHTG 186
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 819 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYK 878
CP CGK F++ + LQ H + H EK Y C C K F+ + L++H R HT EKPYK
Sbjct: 7 CPECGKSFSQSSNLQKHQR----THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 879 CKDCGAAFNHNVSLKNHKNS 898
C +CG +F+ + L H+ +
Sbjct: 63 CPECGKSFSRSDHLSRHQRT 82
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 845 LEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNS 898
+EK Y C C K F+ + L++H R HT EKPYKC +CG +F+ + L+ H+ +
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT 54
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQ 495
Y C CGK F++ + L H + H E+ + C C K F L++H R H+ +
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRT----HTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEK- 59
Query: 496 VPHPYKCTACNAAFNTKSALNVHRKT 521
PYKC C +F+ L+ H++T
Sbjct: 60 ---PYKCPECGKSFSRSDHLSRHQRT 82
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 794 CDICSAEVVHLAIHKKHSHSGQY-HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICE 852
C ++ +L H++ +H+G+ + CP CGK F++ ++LQ H + H EK Y C
Sbjct: 10 CGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQR----THTGEKPYKCP 64
Query: 853 YCHKEFTFYNYLRRHMRVHTNEK 875
C K F+ ++L RH R H N+K
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQNKK 87
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 655 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERK 714
+ C C K F ++ L+ H + H E P +C CGK+F L++H RTH E+
Sbjct: 5 YKCPECGKSFSQSSNLQKHQR-THTGEKPY---KCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 715 YKCV-CGDGFNFNVSLKVHM 733
YKC CG F+ + L H
Sbjct: 61 YKCPECGKSFSRSDHLSRHQ 80
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 413 CDICCAEVLHLQQHQKAAHSGVCYDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY 472
C ++ +LQ+HQ+ Y C CGK F++ ++L H + H E+ + C
Sbjct: 10 CGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT----HTGEKPYKCPE 65
Query: 473 CNKDFPFMKYLKRHLRVHSN 492
C K F +L RH R H N
Sbjct: 66 CGKSFSRSDHLSRHQRTHQN 85
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 638 ARVVNLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKT 695
++ NL +H+ H E P + C C K F ++ +L+ H + H E P +C CGK+
Sbjct: 15 SQSSNLQKHQRTHTGEKP-YKCPECGKSFSQSSDLQKHQR-THTGEKPY---KCPECGKS 69
Query: 696 FGLKEYLRRHMRTHRVER 713
F ++L RH RTH+ ++
Sbjct: 70 FSRSDHLSRHQRTHQNKK 87
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCV-CGDGFNFNVSLKVHM 733
E+P +C CGK+F L++H RTH E+ YKC CG F+ + L+ H
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQ 52
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 464 LEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+E+ + C C K F L++H R H+ + PYKC C +F+ S L H++T
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEK----PYKCPECGKSFSQSSDLQKHQRT 54
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 104 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERK 163
+ C C K F ++ L+ H + H E P +C CGK+F L++H RTH E+
Sbjct: 5 YKCPECGKSFSQSSNLQKHQR-THTGEKPY---KCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 164 YNGFESAALCFICGFYHKHKKMIYRHIKEH 193
Y C CG + RH + H
Sbjct: 61 YK-------CPECGKSFSRSDHLSRHQRTH 83
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICGFYHKHKKMIYRHIKE 192
E+P +C CGK+F L++H RTH E+ Y C CG + +H +
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYK-------CPECGKSFSQSSDLQKHQRT 54
Query: 193 HIEPKKQEKKVCDICSAEVIHLGTHQKV 220
H K + C + HL HQ+
Sbjct: 55 HTGEKPYKCPECGKSFSRSDHLSRHQRT 82
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 204 CDICSAEVIHLGTHQKVAHSGVTYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQY 263
C ++ +L HQ+ Y C C F++ + H +T H EK + C
Sbjct: 10 CGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT----HTGEKPYKCPE 65
Query: 264 CNKEFPFQGYLNKHMKT 280
C K F +L++H +T
Sbjct: 66 CGKSFSRSDHLSRHQRT 82
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 30/76 (39%)
Query: 382 CYYCGYFNGHKKMIYLHIKDHVAPKKREMKICDICCAEVLHLQQHQKAAHSGVCYDCTFC 441
C CG + H + H K + C ++ LQ+HQ+ Y C C
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPEC 66
Query: 442 GKGFTRKAELNIHIKA 457
GK F+R L+ H +
Sbjct: 67 GKSFSRSDHLSRHQRT 82
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 39/118 (33%), Gaps = 40/118 (33%)
Query: 499 PYKCTACNAAFNTKSALNVHRKTCPNLELLNRDLLPNQTGTDDEKKLEQKEMAKKPTVTE 558
PYKC C +F+ S L H++T
Sbjct: 4 PYKCPECGKSFSQSSNLQKHQRT------------------------------------- 26
Query: 559 PAGEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIK 616
GE+ + C C F + L H RT EKP K C C K F+ L+ H +
Sbjct: 27 HTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK---CPECGKSFSRSDHLSRHQR 81
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 760 CYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKH--SHSGQY- 816
C CG S L+ H R GE K C C + +KH +H+G+
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYK------CPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 817 HVCPHCGKKFTRKAELQLHIK 837
+ CP CGK F+R L H +
Sbjct: 61 YKCPECGKSFSRSDHLSRHQR 81
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 11 EEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGG 70
E+ + C C F + L H RT EKP K C C K F+ + L H ++ H G
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYK---CPECGKSFSQSSDLQKH-QRTHTG 57
Query: 71 GQTDYVREKEVCEICSARVVNLAEHKLCHE 100
+ E C +R +L+ H+ H+
Sbjct: 58 EKPYKCPE---CGKSFSRSDHLSRHQRTHQ 84
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 562 EEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGG 621
E+ + C C F + L H RT EKP K C C K F+ + L H ++ H G
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYK---CPECGKSFSQSSDLQKH-QRTHTG 57
Query: 622 GQTDYVREKEVCEICSARVVNLAEHKLCHE 651
+ E C +R +L+ H+ H+
Sbjct: 58 EKPYKCPE---CGKSFSRSDHLSRHQRTHQ 84
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 818 VCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPY 877
+C CG+ FT+ L +H + H E+ Y C+ CHK F ++LR H +H+ EKP+
Sbjct: 19 ICKFCGRHFTKSYNLLIHERT----HTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 878 KCKDCGAAFNHNVSLKNHKN 897
KC++CG F + +L HK
Sbjct: 75 KCQECGKGFCQSRTLAVHKT 94
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQ 495
+ C FCG+ FT+ L IH + H E+ + C C+K F +L+ H +HS +
Sbjct: 18 FICKFCGRHFTKSYNLLIHERT----HTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK- 72
Query: 496 VPHPYKCTACNAAFNTKSALNVHR 519
P+KC C F L VH+
Sbjct: 73 ---PFKCQECGKGFCQSRTLAVHK 93
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 841 LKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
L + +K +IC++C + FT L H R HT+E+PY C C AF L++H+
Sbjct: 10 LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR 65
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 655 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERP-RCEVCGKTFGLKEYLRRHMRTHRVER 713
F C++C + F ++ L +H +ERP C++C K F +++LR H H E+
Sbjct: 18 FICKFCGRHFTKSYNL-----LIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK 72
Query: 714 KYKCV-CGDGFNFNVSLKVH 732
+KC CG GF + +L VH
Sbjct: 73 PFKCQECGKGFCQSRTLAVH 92
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 81 VCEICS---ARVVNLAEHKLCHEPPR-FTCEYCVKPFRRTQELRNHVKAVHLTETPEERP 136
+C+ C + NL H+ H R +TC+ C K FRR LR+H + +H E P
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPF--- 74
Query: 137 RCEVCGKTFGLKEYLRRHMRTH 158
+C+ CGK F L H H
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLH 96
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 632 VCEICS---ARVVNLAEHKLCHEPPR-FTCEYCVKPFRRTQELRNHVKAVHLTETPEERP 687
+C+ C + NL H+ H R +TC+ C K FRR LR+H + +H E P
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPF--- 74
Query: 688 RCEVCGKTFGLKEYLRRHMRTH 709
+C+ CGK F L H H
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLH 96
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 460 LKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHR 519
L + ++ F+C++C + F L H R H+++ PY C C+ AF + L HR
Sbjct: 10 LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDE----RPYTCDICHKAFRRQDHLRDHR 65
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 227 YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKH 277
+ CKFC FT+ + IH +T H E+ + C C+K F Q +L H
Sbjct: 18 FICKFCGRHFTKSYNLLIHERT----HTDERPYTCDICHKAFRRQDHLRDH 64
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 381 VCYYCGYFNGHKKMIYLHIKDHVAPKKREMKICDICCAEVLHLQQHQKAAHSGVCYDCTF 440
+C +CG + +H + H + IC HL+ H+ + C
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQE 78
Query: 441 CGKGFTRKAELNIHIKAVHLK 461
CGKGF + L +H K +H++
Sbjct: 79 CGKGFCQSRTLAVH-KTLHMQ 98
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 104 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERP-RCEVCGKTFGLKEYLRRHMRTHRVER 162
F C++C + F ++ L +H +ERP C++C K F +++LR H H E+
Sbjct: 18 FICKFCGRHFTKSYNL-----LIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK 72
Query: 163 KY 164
+
Sbjct: 73 PF 74
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 819 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYK 878
C CGK F R + L H+ L H + Y C+YC K F + +++H +HT EKP+K
Sbjct: 4 CKICGKSFKRSSTLSTHL----LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 879 CKDCGAAFNHNVSLKNH 895
C+ CG AF+ + +L H
Sbjct: 60 CQVCGKAFSQSSNLITH 76
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQ 495
+DC CGK F R + L+ H+ L H + + CQYC K F +K+H +H+ +
Sbjct: 2 FDCKICGKSFKRSSTLSTHL----LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEK- 56
Query: 496 VPHPYKCTACNAAFNTKSALNVHRK 520
P+KC C AF+ S L H +
Sbjct: 57 ---PHKCQVCGKAFSQSSNLITHSR 78
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 655 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERP-RCEVCGKTFGLKEYLRRHMRTHRVER 713
F C+ C K F+R+ L + HL + RP C+ CGK F K +++H H E+
Sbjct: 2 FDCKICGKSFKRSSTL-----STHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEK 56
Query: 714 KYKC-VCGDGFNFNVSLKVHMAK 735
+KC VCG F+ + +L H K
Sbjct: 57 PHKCQVCGKAFSQSSNLITHSRK 79
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 82 CEICSA---RVVNLAEHKLCHEPPR-FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPR 137
C+IC R L+ H L H R + C+YC K F + +++ H +H E P +
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPH---K 59
Query: 138 CEVCGKTFGLKEYLRRHMRTH 158
C+VCGK F L H R H
Sbjct: 60 CQVCGKAFSQSSNLITHSRKH 80
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 633 CEICSA---RVVNLAEHKLCHEPPR-FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPR 688
C+IC R L+ H L H R + C+YC K F + +++ H +H E P +
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPH---K 59
Query: 689 CEVCGKTFGLKEYLRRHMRTH 709
C+VCGK F L H R H
Sbjct: 60 CQVCGKAFSQSSNLITHSRKH 80
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 848 TYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
++ C+ C K F + L H+ +H++ +PY C+ CG F+ +K H
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 13/91 (14%)
Query: 104 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERP-RCEVCGKTFGLKEYLRRHMRTHRVER 162
F C+ C K F+R+ L + HL + RP C+ CGK F K +++H H E+
Sbjct: 2 FDCKICGKSFKRSSTL-----STHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEK 56
Query: 163 KYNGFESAALCFICGFYHKHKKMIYRHIKEH 193
+ C +CG + H ++H
Sbjct: 57 PHK-------CQVCGKAFSQSSNLITHSRKH 80
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 15/87 (17%)
Query: 794 CDIC-------SAEVVHLAIHKKHSHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLE 846
C IC S HL IH + + C +CGK+F +K++++ H H E
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHS----DTRPYPCQYCGKRFHQKSDMKKHT----FIHTGE 55
Query: 847 KTYICEYCHKEFTFYNYLRRHMRVHTN 873
K + C+ C K F+ + L H R HT
Sbjct: 56 KPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 226 TYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKH 277
+++CK C F R ++ H+ L H + + CQYC K F + + KH
Sbjct: 1 SFDCKICGKSFKRSSTLSTHL----LIHSDTRPYPCQYCGKRFHQKSDMKKH 48
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSN 492
Y C +CGK F +K+++ H H E+ CQ C K F L H R H+
Sbjct: 30 YPCQYCGKRFHQKSDMKKHT----FIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 138 CEVCGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICGFYHKHKKMIYRHIKEHIEPK 197
C++CGK+F L H+ H R Y C CG K + +H H K
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYP-------CQYCGKRFHQKSDMKKHTFIHTGEK 56
Query: 198 KQEKKVCDICSAEVIHLGTHQKVAHSG 224
+ +VC ++ +L TH + H+G
Sbjct: 57 PHKCQVCGKAFSQSSNLITHSR-KHTG 82
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 33/51 (64%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
EK Y C C K F+ + L +H RVHT EKPYKC +CG AF+ N L NH+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 465 EQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRK 520
E+ + C C K F L +H RVH+ + PYKC C AF+ S L H++
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGE----KPYKCLECGKAFSQNSGLINHQR 63
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCV-CGDGFNFNVSLKVHM 733
E+P C CGK F L +H R H E+ YKC+ CG F+ N L H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 819 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTN 873
C CGK F+R + L H + H EK Y C C K F+ + L H R+HT+
Sbjct: 17 CVECGKAFSRSSILVQHQR----VHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 33.5 bits (75), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSND 493
Y C CGK F+R + L H + H E+ + C C K F L H R+H++
Sbjct: 15 YGCVECGKAFSRSSILVQHQRV----HTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 104 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTH 158
+ C C K F R+ L H + VH E P +C CGK F L H R H
Sbjct: 15 YGCVECGKAFSRSSILVQHQR-VHTGEKPY---KCLECGKAFSQNSGLINHQRIH 65
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 655 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTH 709
+ C C K F R+ L H + VH E P +C CGK F L H R H
Sbjct: 15 YGCVECGKAFSRSSILVQHQR-VHTGEKPY---KCLECGKAFSQNSGLINHQRIH 65
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 810 HSHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYIC--EYCHKEFTFYNYLRRH 867
H+H + HVC CGK F ++L+ H L H EK + C E C K F+ LR H
Sbjct: 28 HTHGPRVHVCAECGKAFVESSKLKRH----QLVHTGEKPFQCTFEGCGKRFSLDFNLRTH 83
Query: 868 MRVHTNEKPYKC--KDCGAAFNHNVSLKNH 895
+R+HT ++PY C C F + +LK+H
Sbjct: 84 VRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 818 VCPH--CGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEK 875
CPH C K F + ++ H L + ++C C K F + L+RH VHT EK
Sbjct: 7 ACPHKGCTKMFRDNSAMRKH-----LHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 876 PYKC--KDCGAAFNHNVSLKNH 895
P++C + CG F+ + +L+ H
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTH 83
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 643 LAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRC--EVCGKTFGLKE 700
+ +H H P C C K F + +L+ H + VH E P + C E CGK F L
Sbjct: 23 MRKHLHTHGPRVHVCAECGKAFVESSKLKRH-QLVHTGEKPFQ---CTFEGCGKRFSLDF 78
Query: 701 YLRRHMRTHRVERKYKCV---CGDGFNFNVSLKVHM 733
LR H+R H +R Y C C F + +LK H+
Sbjct: 79 NLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 41/101 (40%), Gaps = 17/101 (16%)
Query: 422 HLQQHQKAAHSGVCYDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY--CNKDFPF 479
HL H H C CGK F ++L H L H E+ F C + C K F
Sbjct: 26 HLHTHGPRVHV-----CAECGKAFVESSKLKRH----QLVHTGEKPFQCTFEGCGKRFSL 76
Query: 480 MKYLKRHLRVHSNDVQVPHPYKC--TACNAAFNTKSALNVH 518
L+ H+R+H+ D PY C CN F + L H
Sbjct: 77 DFNLRTHVRIHTGD----RPYVCPFDGCNKKFAQSTNLKSH 113
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 92 LAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRC--EVCGKTFGLKE 149
+ +H H P C C K F + +L+ H + VH E P + C E CGK F L
Sbjct: 23 MRKHLHTHGPRVHVCAECGKAFVESSKLKRH-QLVHTGEKPFQ---CTFEGCGKRFSLDF 78
Query: 150 YLRRHMRTHRVERKY 164
LR H+R H +R Y
Sbjct: 79 NLRTHVRIHTGDRPY 93
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 817 HVCP--HCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNE 874
+ CP C ++F+R AEL HI+ H +K + C C + F+ ++L H+R HT E
Sbjct: 5 YACPVESCDRRFSRSAELTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 875 KPYKCKDCGAAFNHNVSLKNH 895
KP+ C CG F + K H
Sbjct: 61 KPFACDICGRKFARSDERKRH 81
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 658 EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYKC 717
E C + F R+ EL H++ +H + P + C +C + F ++L H+RTH E+ + C
Sbjct: 10 ESCDRRFSRSAELTRHIR-IHTGQKPFQ---CRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 718 -VCGDGFNFNVSLKVH 732
+CG F + K H
Sbjct: 66 DICGRKFARSDERKRH 81
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 441 CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPY 500
C + F+R AEL HI+ H ++ F C+ C ++F +L H+R H+ + P+
Sbjct: 12 CDRRFSRSAELTRHIRI----HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE----KPF 63
Query: 501 KCTACNAAFNTKSALNVHRK 520
C C F H K
Sbjct: 64 ACDICGRKFARSDERKRHTK 83
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 107 EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYNG 166
E C + F R+ EL H++ +H + P + C +C + F ++L H+RTH E+ +
Sbjct: 10 ESCDRRFSRSAELTRHIR-IHTGQKPFQ---CRICMRNFSRSDHLTTHIRTHTGEKPF-- 63
Query: 167 FESAALCFICGFYHKHKKMIYRHIKEHIEPK 197
C ICG RH K H+ K
Sbjct: 64 -----ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 204 CDICSAEVIHLGTHQKVAHSGVTYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQY 263
CD + L H ++ + C+ C F+R + HI+T H EK F C
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDI 67
Query: 264 CNKEFPFQGYLNKHMK 279
C ++F +H K
Sbjct: 68 CGRKFARSDERKRHTK 83
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 631 EVCEICSARVVNLAEHKLCHEPPR-FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRC 689
E C+ +R L H H + F C C++ F R+ L H++ T T E+ C
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR----THTGEKPFAC 65
Query: 690 EVCGKTFGLKEYLRRHMRTH 709
++CG+ F + +RH + H
Sbjct: 66 DICGRKFARSDERKRHTKIH 85
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 413 CDICCAEVLHLQQHQKAAHSGVCYDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY 472
CD + L +H + + C C + F+R L HI+ H E+ F C
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDI 67
Query: 473 CNKDFPFMKYLKRHLRVH 490
C + F KRH ++H
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 560 AGEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIK 616
G++ F CRIC F + L H+RT EKP C +C + FA H K
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP---FACDICGRKFARSDERKRHTK 83
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 2 SIELAYSVR----EEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATR 57
S EL +R ++ F CRIC F + L H+RT EKP C +C + FA
Sbjct: 19 SAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP---FACDICGRKFARS 75
Query: 58 ATLTLHIK 65
H K
Sbjct: 76 DERKRHTK 83
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 232 CSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMKT 280
C +F+R ++ HI+ H +K F C+ C + F +L H++T
Sbjct: 12 CDRRFSRSAELTRHIRI----HTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 50 CAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVVNLAEHKLCH--EPPRFTCE 107
C + F+ A LT HI+ +H G + R +C +R +L H H E P F C+
Sbjct: 12 CDRRFSRSAELTRHIR-IHTGQKPFQCR---ICMRNFSRSDHLTTHIRTHTGEKP-FACD 66
Query: 108 YCVKPFRRTQELRNHVKAVHLTE 130
C + F R+ E + H K +HL +
Sbjct: 67 ICGRKFARSDERKRHTK-IHLRQ 88
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 771 STLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQY-HVCPHCGKKFTRK 829
+ L H+R+ G+ K + +IC + HL H + +H+G+ C CG+KF R
Sbjct: 20 AELTRHIRIHTGQ---KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARS 75
Query: 830 AELQLHIKGIHLKHQ 844
E + H K IHL+ +
Sbjct: 76 DERKRHTK-IHLRQK 89
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 817 HVCP--HCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNE 874
+ CP C ++F+R A+L HI+ H +K + C C + F+ ++L H+R HT E
Sbjct: 5 YACPVESCDRRFSRSADLTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 875 KPYKCKDCGAAFNHNVSLKNH 895
KP+ C CG F + K H
Sbjct: 61 KPFACDICGRKFARSDERKRH 81
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 658 EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYKC 717
E C + F R+ +L H++ +H + P + C +C + F ++L H+RTH E+ + C
Sbjct: 10 ESCDRRFSRSADLTRHIR-IHTGQKPFQ---CRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 718 -VCGDGFNFNVSLKVH 732
+CG F + K H
Sbjct: 66 DICGRKFARSDERKRH 81
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 631 EVCEICSARVVNLAEHKLCHEPPR-FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRC 689
E C+ +R +L H H + F C C++ F R+ L H++ T T E+ C
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR----THTGEKPFAC 65
Query: 690 EVCGKTFGLKEYLRRHMRTH 709
++CG+ F + +RH + H
Sbjct: 66 DICGRKFARSDERKRHTKIH 85
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 107 EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYNG 166
E C + F R+ +L H++ +H + P + C +C + F ++L H+RTH E+ +
Sbjct: 10 ESCDRRFSRSADLTRHIR-IHTGQKPFQ---CRICMRNFSRSDHLTTHIRTHTGEKPF-- 63
Query: 167 FESAALCFICGFYHKHKKMIYRHIKEHIEPK 197
C ICG RH K H+ K
Sbjct: 64 -----ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 441 CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPY 500
C + F+R A+L HI+ H ++ F C+ C ++F +L H+R H+ + P+
Sbjct: 12 CDRRFSRSADLTRHIRI----HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE----KPF 63
Query: 501 KCTACNAAFNTKSALNVHRK 520
C C F H K
Sbjct: 64 ACDICGRKFARSDERKRHTK 83
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 204 CDICSAEVIHLGTHQKVAHSGVTYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQY 263
CD + L H ++ + C+ C F+R + HI+T H EK F C
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDI 67
Query: 264 CNKEFPFQGYLNKHMK 279
C ++F +H K
Sbjct: 68 CGRKFARSDERKRHTK 83
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 413 CDICCAEVLHLQQHQKAAHSGVCYDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY 472
CD + L +H + + C C + F+R L HI+ H E+ F C
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDI 67
Query: 473 CNKDFPFMKYLKRHLRVH 490
C + F KRH ++H
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 560 AGEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIK 616
G++ F CRIC F + L H+RT EKP C +C + FA H K
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP---FACDICGRKFARSDERKRHTK 83
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 2 SIELAYSVR----EEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATR 57
S +L +R ++ F CRIC F + L H+RT EKP C +C + FA
Sbjct: 19 SADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP---FACDICGRKFARS 75
Query: 58 ATLTLHIK 65
H K
Sbjct: 76 DERKRHTK 83
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 50 CAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVVNLAEHKLCH--EPPRFTCE 107
C + F+ A LT HI+ +H G + R +C +R +L H H E P F C+
Sbjct: 12 CDRRFSRSADLTRHIR-IHTGQKPFQCR---ICMRNFSRSDHLTTHIRTHTGEKP-FACD 66
Query: 108 YCVKPFRRTQELRNHVKAVHLTE 130
C + F R+ E + H K +HL +
Sbjct: 67 ICGRKFARSDERKRHTK-IHLRQ 88
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 232 CSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMKT 280
C +F+R + HI+ H +K F C+ C + F +L H++T
Sbjct: 12 CDRRFSRSADLTRHIRI----HTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 771 STLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQY-HVCPHCGKKFTRK 829
+ L H+R+ G+ K + +IC + HL H + +H+G+ C CG+KF R
Sbjct: 20 ADLTRHIRIHTGQ---KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARS 75
Query: 830 AELQLHIKGIHLKHQ 844
E + H K IHL+ +
Sbjct: 76 DERKRHTK-IHLRQK 89
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 820 PHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVHTNEKPY 877
P C K++ + + LQ+H + KH EK Y C++ C + F+ + L+RH R HT KP+
Sbjct: 12 PGCNKRYFKLSHLQMHSR----KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPF 67
Query: 878 KCKDCGAAFNHNVSLKNHKNSSCPKRDMTATPPA 911
+CK C F+ + LK H + ++ + P+
Sbjct: 68 QCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPS 101
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 419 EVLHLQQHQKAAHSGVCYDCTF--CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKD 476
++ HLQ H + Y C F C + F+R +L H + +H + F C+ C +
Sbjct: 20 KLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR----RHTGVKPFQCKTCQRK 75
Query: 477 FPFMKYLKRHLRVHSNDVQVPHPYKC--TACNAAFNTKSALNVH 518
F +LK H R H+ + P+ C +C F L H
Sbjct: 76 FSRSDHLKTHTRTHTGEK----PFSCRWPSCQKKFARSDELVRH 115
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 202 KVCDICSAEVIHLGTHQKVAHSGV-TYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFV 260
K C+ + L HQ+ H+GV + CK C KF+R + H +T H EK F
Sbjct: 42 KDCERRFSRSDQLKRHQR-RHTGVKPFQCKTCQRKFSRSDHLKTHTRT----HTGEKPFS 96
Query: 261 CQY--CNKEFPFQGYLNKH 277
C++ C K+F L +H
Sbjct: 97 CRWPSCQKKFARSDELVRH 115
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 395 IYLHIKDHVA--PKKREMKICDICCAEVLHLQQHQKAAHSGV-CYDCTFCGKGFTRKAEL 451
+ +H + H P + + K C+ + L++HQ+ H+GV + C C + F+R L
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQCKTCQRKFSRSDHL 82
Query: 452 NIHIKAVHLKHQLEQRFVCQY--CNKDFPFMKYLKRHLRVH 490
H + H E+ F C++ C K F L RH +H
Sbjct: 83 KTHTRT----HTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 210 EVIHLGTHQKVAHSGVTYNCKF--CSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKE 267
++ HL H + Y C F C +F+R Q+ H + +H K F C+ C ++
Sbjct: 20 KLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR----RHTGVKPFQCKTCQRK 75
Query: 268 FPFQGYLNKHMKT 280
F +L H +T
Sbjct: 76 FSRSDHLKTHTRT 88
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 655 FTCEY--CVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVE 712
+ C++ C + F R+ +L+ H + H P + C+ C + F ++L+ H RTH E
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQ---CKTCQRKFSRSDHLKTHTRTHTGE 92
Query: 713 RKYKC 717
+ + C
Sbjct: 93 KPFSC 97
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 19/122 (15%)
Query: 468 FVCQY--CNKDFPFMKYLKRHLRVHSNDVQVPHPYKCT--ACNAAFNTKSALNVHRKTCP 523
F+C Y CNK + + +L+ H R H+ + PY+C C F+ L H++
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEK----PYQCDFKDCERRFSRSDQLKRHQRR-- 60
Query: 524 NLELLNRDLLPNQTGTDDEKKLEQKEMAKKPTVTEPAGEEAFTCRI--CQAVFDKYVRLC 581
+ + P Q T ++K + + K T T GE+ F+CR CQ F + L
Sbjct: 61 -----HTGVKPFQCKT-CQRKFSRSDHLKTHTRTH-TGEKPFSCRWPSCQKKFARSDELV 113
Query: 582 GH 583
H
Sbjct: 114 RH 115
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 817 HVCP--HCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNE 874
+ CP C ++F+R EL HI+ H +K + C C + F+ ++L H+R HT E
Sbjct: 4 YACPVESCDRRFSRSDELTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Query: 875 KPYKCKDCGAAFNHNVSLKNH 895
KP+ C CG F + K H
Sbjct: 60 KPFACDICGRKFARSDERKRH 80
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 658 EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYKC 717
E C + F R+ EL H++ +H + P + C +C + F ++L H+RTH E+ + C
Sbjct: 9 ESCDRRFSRSDELTRHIR-IHTGQKPFQ---CRICMRNFSRSDHLTTHIRTHTGEKPFAC 64
Query: 718 -VCGDGFNFNVSLKVH 732
+CG F + K H
Sbjct: 65 DICGRKFARSDERKRH 80
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 107 EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYNG 166
E C + F R+ EL H++ +H + P + C +C + F ++L H+RTH E+ +
Sbjct: 9 ESCDRRFSRSDELTRHIR-IHTGQKPFQ---CRICMRNFSRSDHLTTHIRTHTGEKPF-- 62
Query: 167 FESAALCFICGFYHKHKKMIYRHIKEHI 194
C ICG RH K H+
Sbjct: 63 -----ACDICGRKFARSDERKRHTKIHL 85
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 441 CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPY 500
C + F+R EL HI+ H ++ F C+ C ++F +L H+R H+ + P+
Sbjct: 11 CDRRFSRSDELTRHIRI----HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE----KPF 62
Query: 501 KCTACNAAFNTKSALNVHRK 520
C C F H K
Sbjct: 63 ACDICGRKFARSDERKRHTK 82
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 204 CDICSAEVIHLGTHQKVAHSGVTYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQY 263
CD + L H ++ + C+ C F+R + HI+T H EK F C
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDI 66
Query: 264 CNKEFPFQGYLNKHMK 279
C ++F +H K
Sbjct: 67 CGRKFARSDERKRHTK 82
Score = 36.2 bits (82), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 631 EVCEICSARVVNLAEHKLCHEPPR-FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRC 689
E C+ +R L H H + F C C++ F R+ L H++ T T E+ C
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR----THTGEKPFAC 64
Query: 690 EVCGKTFGLKEYLRRHMRTH 709
++CG+ F + +RH + H
Sbjct: 65 DICGRKFARSDERKRHTKIH 84
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVH 490
+ C C + F+R L HI+ H E+ F C C + F KRH ++H
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 560 AGEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIK 616
G++ F CRIC F + L H+RT EKP C +C + FA H K
Sbjct: 29 TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP---FACDICGRKFARSDERKRHTK 82
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 812 HSGQYHV-CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRV 870
H+GQ C C + F+R L HI+ H EK + C+ C ++F + +RH ++
Sbjct: 28 HTGQKPFQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDICGRKFARSDERKRHTKI 83
Query: 871 HTNE 874
H +
Sbjct: 84 HLRQ 87
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 2 SIELAYSVR----EEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATR 57
S EL +R ++ F CRIC F + L H+RT EKP C +C + FA
Sbjct: 18 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP---FACDICGRKFARS 74
Query: 58 ATLTLHIK 65
H K
Sbjct: 75 DERKRHTK 82
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 232 CSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMKT 280
C +F+R ++ HI+ H +K F C+ C + F +L H++T
Sbjct: 11 CDRRFSRSDELTRHIRI----HTGQKPFQCRICMRNFSRSDHLTTHIRT 55
Score = 29.6 bits (65), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 773 LKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQY-HVCPHCGKKFTRKAE 831
L H+R+ G+ K + +IC + HL H + +H+G+ C CG+KF R E
Sbjct: 21 LTRHIRIHTGQ---KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDE 76
Query: 832 LQLHIKGIHLK 842
+ H K IHL+
Sbjct: 77 RKRHTK-IHLR 86
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 817 HVCP--HCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNE 874
+ CP C ++F+R EL HI+ H +K + C C + F+ ++L H+R HT E
Sbjct: 5 YACPVESCDRRFSRSDELTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 875 KPYKCKDCGAAFNHNVSLKNH 895
KP+ C CG F + K H
Sbjct: 61 KPFACDICGRKFARSDERKRH 81
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 658 EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYKC 717
E C + F R+ EL H++ +H + P + C +C + F ++L H+RTH E+ + C
Sbjct: 10 ESCDRRFSRSDELTRHIR-IHTGQKPFQ---CRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 718 -VCGDGFNFNVSLKVH 732
+CG F + K H
Sbjct: 66 DICGRKFARSDERKRH 81
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 107 EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYNG 166
E C + F R+ EL H++ +H + P + C +C + F ++L H+RTH E+ +
Sbjct: 10 ESCDRRFSRSDELTRHIR-IHTGQKPFQ---CRICMRNFSRSDHLTTHIRTHTGEKPF-- 63
Query: 167 FESAALCFICGFYHKHKKMIYRHIKEHIEPK 197
C ICG RH K H+ K
Sbjct: 64 -----ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 441 CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPY 500
C + F+R EL HI+ H ++ F C+ C ++F +L H+R H+ + P+
Sbjct: 12 CDRRFSRSDELTRHIRI----HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE----KPF 63
Query: 501 KCTACNAAFNTKSALNVHRK 520
C C F H K
Sbjct: 64 ACDICGRKFARSDERKRHTK 83
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 204 CDICSAEVIHLGTHQKVAHSGVTYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQY 263
CD + L H ++ + C+ C F+R + HI+T H EK F C
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDI 67
Query: 264 CNKEFPFQGYLNKHMK 279
C ++F +H K
Sbjct: 68 CGRKFARSDERKRHTK 83
Score = 36.6 bits (83), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 631 EVCEICSARVVNLAEHKLCHEPPR-FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRC 689
E C+ +R L H H + F C C++ F R+ L H++ T T E+ C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR----THTGEKPFAC 65
Query: 690 EVCGKTFGLKEYLRRHMRTH 709
++CG+ F + +RH + H
Sbjct: 66 DICGRKFARSDERKRHTKIH 85
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVH 490
+ C C + F+R L HI+ H E+ F C C + F KRH ++H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 560 AGEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIK 616
G++ F CRIC F + L H+RT EKP C +C + FA H K
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP---FACDICGRKFARSDERKRHTK 83
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 2 SIELAYSVR----EEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATR 57
S EL +R ++ F CRIC F + L H+RT EKP C +C + FA
Sbjct: 19 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP---FACDICGRKFARS 75
Query: 58 ATLTLHIK 65
H K
Sbjct: 76 DERKRHTK 83
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 232 CSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMKT 280
C +F+R ++ HI+ H +K F C+ C + F +L H++T
Sbjct: 12 CDRRFSRSDELTRHIRI----HTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 773 LKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQY-HVCPHCGKKFTRKAE 831
L H+R+ G+ K + +IC + HL H + +H+G+ C CG+KF R E
Sbjct: 22 LTRHIRIHTGQ---KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDE 77
Query: 832 LQLHIKGIHLKHQ 844
+ H K IHL+ +
Sbjct: 78 RKRHTK-IHLRQK 89
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 817 HVCP--HCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNE 874
+ CP C ++F+R EL HI+ H +K + C C + F+ ++L H+R HT E
Sbjct: 5 YACPVESCDRRFSRSDELTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 875 KPYKCKDCGAAFNHNVSLKNH 895
KP+ C CG F + K H
Sbjct: 61 KPFACDICGRKFARSDERKRH 81
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 650 HEPPRFTC--EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMR 707
HE P + C E C + F R+ EL H++ +H + P + C +C + F ++L H+R
Sbjct: 1 HERP-YACPVESCDRRFSRSDELTRHIR-IHTGQKPFQ---CRICMRNFSRSDHLTTHIR 55
Query: 708 THRVERKYKC-VCGDGFNFNVSLKVH 732
TH E+ + C +CG F + K H
Sbjct: 56 THTGEKPFACDICGRKFARSDERKRH 81
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 99 HEPPRFTC--EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMR 156
HE P + C E C + F R+ EL H++ +H + P + C +C + F ++L H+R
Sbjct: 1 HERP-YACPVESCDRRFSRSDELTRHIR-IHTGQKPFQ---CRICMRNFSRSDHLTTHIR 55
Query: 157 THRVERKYNGFESAALCFICGFYHKHKKMIYRHIKEHI 194
TH E+ + C ICG RH K H+
Sbjct: 56 THTGEKPF-------ACDICGRKFARSDERKRHTKIHL 86
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 441 CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPY 500
C + F+R EL HI+ H ++ F C+ C ++F +L H+R H+ + P+
Sbjct: 12 CDRRFSRSDELTRHIRI----HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE----KPF 63
Query: 501 KCTACNAAFNTKSALNVHRK 520
C C F H K
Sbjct: 64 ACDICGRKFARSDERKRHTK 83
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 204 CDICSAEVIHLGTHQKVAHSGVTYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQY 263
CD + L H ++ + C+ C F+R + HI+T H EK F C
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDI 67
Query: 264 CNKEFPFQGYLNKHMK 279
C ++F +H K
Sbjct: 68 CGRKFARSDERKRHTK 83
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 631 EVCEICSARVVNLAEHKLCHEPPR-FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRC 689
E C+ +R L H H + F C C++ F R+ L H++ T T E+ C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR----THTGEKPFAC 65
Query: 690 EVCGKTFGLKEYLRRHMRTH 709
++CG+ F + +RH + H
Sbjct: 66 DICGRKFARSDERKRHTKIH 85
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 402 HVAPKKREMKICDICCAEVLHLQQHQKAAHSGVCYDCTFCGKGFTRKAELNIHIKAVHLK 461
H P ++ CD + L +H + + C C + F+R L HI+
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT---- 56
Query: 462 HQLEQRFVCQYCNKDFPFMKYLKRHLRVH 490
H E+ F C C + F KRH ++H
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 560 AGEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIK 616
G++ F CRIC F + L H+RT EKP C +C + FA H K
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP---FACDICGRKFARSDERKRHTK 83
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 2 SIELAYSVR----EEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATR 57
S EL +R ++ F CRIC F + L H+RT EKP C +C + FA
Sbjct: 19 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP---FACDICGRKFARS 75
Query: 58 ATLTLHIK 65
H K
Sbjct: 76 DERKRHTK 83
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 812 HSGQYHV-CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRV 870
H+GQ C C + F+R L HI+ H EK + C+ C ++F + +RH ++
Sbjct: 29 HTGQKPFQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDICGRKFARSDERKRHTKI 84
Query: 871 H 871
H
Sbjct: 85 H 85
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 232 CSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMKT 280
C +F+R ++ HI+ H +K F C+ C + F +L H++T
Sbjct: 12 CDRRFSRSDELTRHIRI----HTGQKPFQCRICMRNFSRSDHLTTHIRT 56
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
+K Y C+ C F + L H VHT EKPY+C CGA FN +LK H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 104 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVER 162
+ C+ C FR L +H K VH E P RC +CG F L+ H R H E+
Sbjct: 18 YKCDRCQASFRYKGNLASH-KTVHTGEKPY---RCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 655 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVER 713
+ C+ C FR L +H K VH E P RC +CG F L+ H R H E+
Sbjct: 18 YKCDRCQASFRYKGNLASH-KTVHTGEKPY---RCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 819 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
C C F K L H K +H EK Y C C +F L+ H R+H+ EKP
Sbjct: 20 CDRCQASFRYKGNLASH-KTVHTG---EKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 688 RCEVCGKTFGLKEYLRRHMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+C+ C +F K L H H E+ Y+C +CG FN +LK H
Sbjct: 19 KCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 465 EQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVH 518
++ + C C F + L H VH+ + PY+C C A FN + L H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGE----KPYRCNICGAQFNRPANLKTH 64
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 811 SHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRV 870
S S H C CGK F+RK +L+ H++ H K Y C+ C + L +H+R+
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRC----HTGVKPYKCKTCDYAAADSSSLNKHLRI 58
Query: 871 HTNEKPYKCKDCGAAFNHN----VSLKNHKNSSCP 901
H++E+P+KC+ C A ++ V L++H S P
Sbjct: 59 HSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGP 93
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 438 CTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVP 497
C CGK F+RK +L H++ H + + C+ C+ L +HLR+HS++
Sbjct: 11 CEVCGKCFSRKDKLKTHMRC----HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE---- 62
Query: 498 HPYKCTACNAAFNTKSALNVHRKT 521
P+KC C A S L VH ++
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRS 86
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 25/102 (24%)
Query: 688 RCEVCGKTFGLKEYLRRHMRTHRVERKYKC-----VCGDGFNFNVSLKVHMAKCAFYLKS 742
+CEVCGK F K+ L+ HMR H + YKC D + N L++H + F
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK--- 66
Query: 743 LEKEGESDHGGYETSSLCYHCGYYSKNRSTLKNHVRVEHGEN 784
C C Y S+N S L H+R G++
Sbjct: 67 -----------------CQICPYASRNSSQLTVHLRSHTGDS 91
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 137 RCEVCGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICGFYHKHKKMIYRHIKEHIEP 196
+CEVCGK F K+ L+ HMR H + Y C C + + +H++ H +
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYK-------CKTCDYAAADSSSLNKHLRIHSDE 62
Query: 197 KKQEKKVCDICSAEVIHLGTHQKVAHSG 224
+ + ++C S L H + +H+G
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLR-SHTG 89
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 657 CEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYK 716
CE C K F R +L+ H++ H P +C+ C L +H+R H ER +K
Sbjct: 11 CEVCGKCFSRKDKLKTHMR-CHTGVKPY---KCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 717 C-VCGDGFNFNVSLKVHM 733
C +C + L VH+
Sbjct: 67 CQICPYASRNSSQLTVHL 84
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 106 CEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYN 165
CE C K F R +L+ H++ H P +C+ C L +H+R H ER +
Sbjct: 11 CEVCGKCFSRKDKLKTHMR-CHTGVKPY---KCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 166 GFESAALCFICGFYHKHKKMIYRHIKEHI 194
C IC + ++ + H++ H
Sbjct: 67 -------CQICPYASRNSSQLTVHLRSHT 88
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 35/84 (41%)
Query: 165 NGFESAALCFICGFYHKHKKMIYRHIKEHIEPKKQEKKVCDICSAEVIHLGTHQKVAHSG 224
+G C +CG K + H++ H K + K CD +A+ L H ++
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 225 VTYNCKFCSMKFTRVGQMNIHIKT 248
+ C+ C Q+ +H+++
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRS 86
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 31/76 (40%)
Query: 382 CYYCGYFNGHKKMIYLHIKDHVAPKKREMKICDICCAEVLHLQQHQKAAHSGVCYDCTFC 441
C CG K + H++ H K + K CD A+ L +H + + C C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 442 GKGFTRKAELNIHIKA 457
++L +H+++
Sbjct: 71 PYASRNSSQLTVHLRS 86
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 817 HVCP--HCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNE 874
+ CP C ++F++ L HI+ H +K + C C + F+ ++L H+R HT E
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 875 KPYKCKDCGAAFNHNVSLKNH 895
KP+ C CG F + K H
Sbjct: 61 KPFACDICGRKFARSDERKRH 81
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 658 EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYKC 717
E C + F ++ L H++ +H + P + C +C + F ++L H+RTH E+ + C
Sbjct: 10 ESCDRRFSQSGSLTRHIR-IHTGQKPFQ---CRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 718 -VCGDGFNFNVSLKVH 732
+CG F + K H
Sbjct: 66 DICGRKFARSDERKRH 81
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 204 CDICSAEVIHLGTHQKVAHSGVTYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQY 263
CD ++ L H ++ + C+ C F+R + HI+T H EK F C
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDI 67
Query: 264 CNKEFPFQGYLNKHMK 279
C ++F +H K
Sbjct: 68 CGRKFARSDERKRHTK 83
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 107 EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYNG 166
E C + F ++ L H++ +H + P + C +C + F ++L H+RTH E+ +
Sbjct: 10 ESCDRRFSQSGSLTRHIR-IHTGQKPFQ---CRICMRNFSRSDHLTTHIRTHTGEKPF-- 63
Query: 167 FESAALCFICGFYHKHKKMIYRHIKEHIEPK 197
C ICG RH K H+ K
Sbjct: 64 -----ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 413 CDICCAEVLHLQQHQKAAHSGVCYDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY 472
CD ++ L +H + + C C + F+R L HI+ H E+ F C
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDI 67
Query: 473 CNKDFPFMKYLKRHLRVH 490
C + F KRH ++H
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 631 EVCEICSARVVNLAEHKLCHEPPR-FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRC 689
E C+ ++ +L H H + F C C++ F R+ L H++ T T E+ C
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR----THTGEKPFAC 65
Query: 690 EVCGKTFGLKEYLRRHMRTH 709
++CG+ F + +RH + H
Sbjct: 66 DICGRKFARSDERKRHTKIH 85
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 560 AGEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIK 616
G++ F CRIC F + L H+RT EKP C +C + FA H K
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP---FACDICGRKFARSDERKRHTK 83
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 441 CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPY 500
C + F++ L HI+ H ++ F C+ C ++F +L H+R H+ + P+
Sbjct: 12 CDRRFSQSGSLTRHIRI----HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE----KPF 63
Query: 501 KCTACNAAFNTKSALNVHRK 520
C C F H K
Sbjct: 64 ACDICGRKFARSDERKRHTK 83
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 11 EEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIK 65
++ F CRIC F + L H+RT EKP C +C + FA H K
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKP---FACDICGRKFARSDERKRHTK 83
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 232 CSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMKT 280
C +F++ G + HI+ H +K F C+ C + F +L H++T
Sbjct: 12 CDRRFSQSGSLTRHIRI----HTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 50 CAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVVNLAEHKLCH--EPPRFTCE 107
C + F+ +LT HI+ +H G + R +C +R +L H H E P F C+
Sbjct: 12 CDRRFSQSGSLTRHIR-IHTGQKPFQCR---ICMRNFSRSDHLTTHIRTHTGEKP-FACD 66
Query: 108 YCVKPFRRTQELRNHVKAVHLTE 130
C + F R+ E + H K +HL +
Sbjct: 67 ICGRKFARSDERKRHTK-IHLRQ 88
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 763 CGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQY-HVCPH 821
C +L H+R+ G+ K + +IC + HL H + +H+G+ C
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQ---KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDI 67
Query: 822 CGKKFTRKAELQLHIKGIHLKHQ 844
CG+KF R E + H K IHL+ +
Sbjct: 68 CGRKFARSDERKRHTK-IHLRQK 89
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 803 HLAIHKKHSHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYN 862
+L +H + + CP CGK + RK L H + + ++ E+ + C C + F
Sbjct: 22 YLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH-EARNCMNRSEQVFTCSVCQETFRRRM 80
Query: 863 YLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
LR HM HT E PYKC C F L++H
Sbjct: 81 ELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQ 495
++C CGK + RK L H +A + ++ EQ F C C + F L+ H+ H+ ++
Sbjct: 36 FECPKCGKCYFRKENLLEH-EARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEM- 93
Query: 496 VPHPYKCTACNAAFNTKSALNVH 518
PYKC++C+ F K L H
Sbjct: 94 ---PYKCSSCSQQFMQKKDLQSH 113
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 851 CEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNSSCPKRD 904
C CHK+F YL+ H R HT EKP++C CG + +L H+ +C R
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS 63
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 56/152 (36%), Gaps = 41/152 (26%)
Query: 470 CQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKTCPNLELLN 529
C C+K F YLK H R H+ + P++C C + K L H +N
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGE----KPFECPKCGKCYFRKENLLEHEAR----NCMN 61
Query: 530 RDLLPNQTGTDDEKKLEQKEMAKKPTVTEPAGEEAFTCRICQAVFDKYVRLCGHLRTVHN 589
R E+ FTC +CQ F + + L H+ +
Sbjct: 62 RS------------------------------EQVFTCSVCQETFRRRMELRLHMVSHTG 91
Query: 590 EKPEKSNLCFVCAKVFATRATLTLHIKQMHGG 621
E P K C C++ F + L H+ ++H G
Sbjct: 92 EMPYK---CSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Query: 47 CFVCAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVVNLAEHK----LCHEPP 102
C C K F ++ L +H ++ G + E C C R NL EH+ +
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTG----EKPFECPKCGKCYFRKENLLEHEARNCMNRSEQ 65
Query: 103 RFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHM 155
FTC C + FRR ELR H+ H E P +C C + F K+ L+ HM
Sbjct: 66 VFTCSVCQETFRRRMELRLHM-VSHTGEMPY---KCSSCSQQFMQKKDLQSHM 114
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 655 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERK 714
F C C K + R + L H +A + E+ C VC +TF + LR HM +H E
Sbjct: 36 FECPKCGKCYFRKENLLEH-EARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMP 94
Query: 715 YKC-VCGDGFNFNVSLKVHMAK 735
YKC C F L+ HM K
Sbjct: 95 YKCSSCSQQFMQKKDLQSHMIK 116
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 11 EEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGG 70
E+ FTC +CQ F + + L H+ + E P K C C++ F + L H+ ++H G
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYK---CSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 12/117 (10%)
Query: 138 CEVCGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICGFYHKHKKMIYRHIKEHIEPK 197
C C K F K YL+ H R H E+ + C CG + K+ + H + +
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFE-------CPKCGKCYFRKENLLEHEARNCMNR 62
Query: 198 KQEKKVCDICSAEV---IHLGTHQKVAHSG-VTYNCKFCSMKFTRVGQMNIHIKTVH 250
++ C +C + L H V+H+G + Y C CS +F + + H+ +H
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHM-VSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 813 SGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHM 868
S Q C C + F R+ EL+LH+ + H E Y C C ++F L+ HM
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHM----VSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
Query: 104 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERK 163
F C C K + R + L H +A + E+ C VC +TF + LR HM +H E
Sbjct: 36 FECPKCGKCYFRKENLLEH-EARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMP 94
Query: 164 YNGFESAALCFICGFYHKHKKMIYRH-IKEHIEP 196
Y C C KK + H IK H P
Sbjct: 95 YK-------CSSCSQQFMQKKDLQSHMIKLHSGP 121
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 817 HVCP--HCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNE 874
+ CP C ++F++K L HI+ H +K + C C + F+ + L +H+R HT E
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIR----IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 875 KPYKCKDCGAAF 886
KP+ C CG F
Sbjct: 61 KPFACDICGRKF 72
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 845 LEKTYIC--EYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
+E+ Y C E C + F+ L H+R+HT +KP++C+ C F+ + L H
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQH 53
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 560 AGEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIK 616
G++ F CRIC F ++ L H+RT EKP C +C + FAT T H K
Sbjct: 30 TGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP---FACDICGRKFATLHTRDRHTK 83
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 441 CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPY 500
C + F++K L+ HI+ H ++ F C+ C ++F L +H+R H+ + P+
Sbjct: 12 CDRRFSQKTNLDTHIRI----HTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE----KPF 63
Query: 501 KCTACNAAFNTKSALNVHRK 520
C C F T + H K
Sbjct: 64 ACDICGRKFATLHTRDRHTK 83
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 204 CDICSAEVIHLGTHQKVAHSGVTYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQY 263
CD ++ +L TH ++ + C+ C F++ +N HI+T H EK F C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRT----HTGEKPFACDI 67
Query: 264 CNKEFPFQGYLNKHMK 279
C ++F ++H K
Sbjct: 68 CGRKFATLHTRDRHTK 83
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 11 EEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIK 65
++ F CRIC F ++ L H+RT EKP C +C + FAT T H K
Sbjct: 32 QKPFQCRICMRNFSQHTGLNQHIRTHTGEKP---FACDICGRKFATLHTRDRHTK 83
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 658 EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYKC 717
E C + F + L H++ +H + P + C +C + F L +H+RTH E+ + C
Sbjct: 10 ESCDRRFSQKTNLDTHIR-IHTGQKPFQ---CRICMRNFSQHTGLNQHIRTHTGEKPFAC 65
Query: 718 -VCGDGF 723
+CG F
Sbjct: 66 DICGRKF 72
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 413 CDICCAEVLHLQQHQKAAHSGVCYDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY 472
CD ++ +L H + + C C + F++ LN HI+ H E+ F C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRT----HTGEKPFACDI 67
Query: 473 CNKDFPFMKYLKRHLRVH 490
C + F + RH ++H
Sbjct: 68 CGRKFATLHTRDRHTKIH 85
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 80 EVCEICSARVVNLAEHKLCHEPPR-FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRC 138
E C+ ++ NL H H + F C C++ F + L H++ T T E+ C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR----THTGEKPFAC 65
Query: 139 EVCGKTFGLKEYLRRHMRTH 158
++CG+ F RH + H
Sbjct: 66 DICGRKFATLHTRDRHTKIH 85
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 631 EVCEICSARVVNLAEHKLCHEPPR-FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRC 689
E C+ ++ NL H H + F C C++ F + L H++ T T E+ C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR----THTGEKPFAC 65
Query: 690 EVCGKTFGLKEYLRRHMRTH 709
++CG+ F RH + H
Sbjct: 66 DICGRKFATLHTRDRHTKIH 85
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 107 EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYNG 166
E C + F + L H++ +H + P + C +C + F L +H+RTH E+ +
Sbjct: 10 ESCDRRFSQKTNLDTHIR-IHTGQKPFQ---CRICMRNFSQHTGLNQHIRTHTGEKPF-- 63
Query: 167 FESAALCFICGFYHKHKKMIYRHIKEHIEPK 197
C ICG RH K H+ K
Sbjct: 64 -----ACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 794 CDICSAEVVHLAIHKKHSHSGQYHV-CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICE 852
CD ++ +L H + H+GQ C C + F++ L HI+ H EK + C+
Sbjct: 12 CDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIR----THTGEKPFACD 66
Query: 853 YCHKEFTFYNYLRRHMRVHTNEK 875
C ++F + RH ++H +K
Sbjct: 67 ICGRKFATLHTRDRHTKIHLRQK 89
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 464 LEQRFVC--QYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+E+ + C + C++ F L H+R+H+ P++C C F+ + LN H +T
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQ----KPFQCRICMRNFSQHTGLNQHIRT 56
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 232 CSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMKT 280
C +F++ ++ HI+ H +K F C+ C + F LN+H++T
Sbjct: 12 CDRRFSQKTNLDTHIRI----HTGQKPFQCRICMRNFSQHTGLNQHIRT 56
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 817 HVCP--HCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNE 874
+ CP C ++F+ + L HI+ H +K + C C + F+ ++L H+R HT E
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 875 KPYKCKDCGAAFNHNVSLKNH 895
KP+ C CG F + K H
Sbjct: 61 KPFACDICGRKFARSDERKRH 81
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 204 CDICSAEVIHLGTHQKVAHSGVTYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQY 263
CD ++ +L H ++ + C+ C F+R + HI+T H EK F C
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDI 67
Query: 264 CNKEFPFQGYLNKHMK 279
C ++F +H K
Sbjct: 68 CGRKFARSDERKRHTK 83
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 631 EVCEICSARVVNLAEHKLCHEPPR-FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRC 689
E C+ + NL H H + F C C++ F R+ L H++ T T E+ C
Sbjct: 10 ESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR----THTGEKPFAC 65
Query: 690 EVCGKTFGLKEYLRRHMRTH 709
++CG+ F + +RH + H
Sbjct: 66 DICGRKFARSDERKRHTKIH 85
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 658 EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYKC 717
E C + F + L H++ +H + P + C +C + F ++L H+RTH E+ + C
Sbjct: 10 ESCDRRFSDSSNLTRHIR-IHTGQKPFQ---CRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 718 -VCGDGFNFNVSLKVH 732
+CG F + K H
Sbjct: 66 DICGRKFARSDERKRH 81
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 413 CDICCAEVLHLQQHQKAAHSGVCYDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY 472
CD ++ +L +H + + C C + F+R L HI+ H E+ F C
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDI 67
Query: 473 CNKDFPFMKYLKRHLRVH 490
C + F KRH ++H
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 107 EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYNG 166
E C + F + L H++ +H + P + C +C + F ++L H+RTH E+ +
Sbjct: 10 ESCDRRFSDSSNLTRHIR-IHTGQKPFQ---CRICMRNFSRSDHLTTHIRTHTGEKPF-- 63
Query: 167 FESAALCFICGFYHKHKKMIYRHIKEHIEPK 197
C ICG RH K H+ K
Sbjct: 64 -----ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 560 AGEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIK 616
G++ F CRIC F + L H+RT EKP C +C + FA H K
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP---FACDICGRKFARSDERKRHTK 83
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 441 CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPY 500
C + F+ + L HI+ H ++ F C+ C ++F +L H+R H+ + P+
Sbjct: 12 CDRRFSDSSNLTRHIRI----HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE----KPF 63
Query: 501 KCTACNAAFNTKSALNVHRK 520
C C F H K
Sbjct: 64 ACDICGRKFARSDERKRHTK 83
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 11 EEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIK 65
++ F CRIC F + L H+RT EKP C +C + FA H K
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKP---FACDICGRKFARSDERKRHTK 83
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 763 CGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQY-HVCPH 821
C + S L H+R+ G+ K + +IC + HL H + +H+G+ C
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQ---KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDI 67
Query: 822 CGKKFTRKAELQLHIKGIHLKHQ 844
CG+KF R E + H K IHL+ +
Sbjct: 68 CGRKFARSDERKRHTK-IHLRQK 89
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 50 CAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVVNLAEHKLCH--EPPRFTCE 107
C + F+ + LT HI+ +H G + R +C +R +L H H E P F C+
Sbjct: 12 CDRRFSDSSNLTRHIR-IHTGQKPFQCR---ICMRNFSRSDHLTTHIRTHTGEKP-FACD 66
Query: 108 YCVKPFRRTQELRNHVKAVHLTE 130
C + F R+ E + H K +HL +
Sbjct: 67 ICGRKFARSDERKRHTK-IHLRQ 88
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 847 KTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
+ Y C+ C K F+ + L +H R HT EKPYKC +CG AF L H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 819 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
C CGK F+ ++L H + H EK Y C+ C K F ++L H RVHT P
Sbjct: 21 CDECGKSFSHSSDLSKHRR----THTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 466 QRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVH 518
+R+ C C K F L +H R H+ + PYKC C AF +S L H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEK----PYKCDECGKAFIQRSHLIGH 65
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 686 RPRCEVCGKTFGLKEYLRRHMRTHRVERKYKC-VCGDGF 723
R +C+ CGK+F L +H RTH E+ YKC CG F
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSN 492
Y C CGK F+ ++L+ H + H E+ + C C K F +L H RVH+
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRT----HTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 100 EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTH 158
E R+ C+ C K F + +L H + T T E+ +C+ CGK F + +L H R H
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRR----THTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 651 EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTH 709
E R+ C+ C K F + +L H + T T E+ +C+ CGK F + +L H R H
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRR----THTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 817 HVCP--HCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNE 874
+ CP C ++F++K L HI+ H +K + C C + F+ L H+R HT E
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIR----IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 875 KPYKCKDCGAAF 886
KP+ C CG F
Sbjct: 61 KPFACDICGRKF 72
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 845 LEKTYIC--EYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
+E+ Y C E C + F+ L H+R+HT +KP++C+ C F+ SL H
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAH 53
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 560 AGEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIK 616
G++ F CRIC F + L H+RT EKP C +C + FAT T T H K
Sbjct: 30 TGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP---FACDICGRKFATLHTRTRHTK 83
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 204 CDICSAEVIHLGTHQKVAHSGVTYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQY 263
CD ++ +L TH ++ + C+ C F++ +N HI+T H EK F C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRT----HTGEKPFACDI 67
Query: 264 CNKEFPFQGYLNKHMK 279
C ++F +H K
Sbjct: 68 CGRKFATLHTRTRHTK 83
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 413 CDICCAEVLHLQQHQKAAHSGVCYDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY 472
CD ++ +L H + + C C + F+++A LN HI+ H E+ F C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRT----HTGEKPFACDI 67
Query: 473 CNKDFPFMKYLKRHLRVH 490
C + F + RH ++H
Sbjct: 68 CGRKFATLHTRTRHTKIH 85
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 11 EEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIK 65
++ F CRIC F + L H+RT EKP C +C + FAT T T H K
Sbjct: 32 QKPFQCRICMRNFSQQASLNAHIRTHTGEKP---FACDICGRKFATLHTRTRHTK 83
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 441 CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPY 500
C + F++K L+ HI+ H ++ F C+ C ++F L H+R H+ + P+
Sbjct: 12 CDRRFSQKTNLDTHIRI----HTGQKPFQCRICMRNFSQQASLNAHIRTHTGE----KPF 63
Query: 501 KCTACNAAFNTKSALNVHRK 520
C C F T H K
Sbjct: 64 ACDICGRKFATLHTRTRHTK 83
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 658 EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYKC 717
E C + F + L H++ +H + P + C +C + F + L H+RTH E+ + C
Sbjct: 10 ESCDRRFSQKTNLDTHIR-IHTGQKPFQ---CRICMRNFSQQASLNAHIRTHTGEKPFAC 65
Query: 718 -VCGDGF 723
+CG F
Sbjct: 66 DICGRKF 72
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 794 CDICSAEVVHLAIHKKHSHSGQYHV-CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICE 852
CD ++ +L H + H+GQ C C + F+++A L HI+ H EK + C+
Sbjct: 12 CDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIR----THTGEKPFACD 66
Query: 853 YCHKEFTFYNYLRRHMRVHTNEK 875
C ++F + RH ++H +K
Sbjct: 67 ICGRKFATLHTRTRHTKIHLRQK 89
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 107 EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYNG 166
E C + F + L H++ +H + P + C +C + F + L H+RTH E+ +
Sbjct: 10 ESCDRRFSQKTNLDTHIR-IHTGQKPFQ---CRICMRNFSQQASLNAHIRTHTGEKPF-- 63
Query: 167 FESAALCFICGFYHKHKKMIYRHIKEHIEPK 197
C ICG RH K H+ K
Sbjct: 64 -----ACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 80 EVCEICSARVVNLAEHKLCHEPPR-FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRC 138
E C+ ++ NL H H + F C C++ F + L H++ T T E+ C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR----THTGEKPFAC 65
Query: 139 EVCGKTFGLKEYLRRHMRTH 158
++CG+ F RH + H
Sbjct: 66 DICGRKFATLHTRTRHTKIH 85
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 631 EVCEICSARVVNLAEHKLCHEPPR-FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRC 689
E C+ ++ NL H H + F C C++ F + L H++ T T E+ C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR----THTGEKPFAC 65
Query: 690 EVCGKTFGLKEYLRRHMRTH 709
++CG+ F RH + H
Sbjct: 66 DICGRKFATLHTRTRHTKIH 85
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 232 CSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMKT 280
C +F++ ++ HI+ H +K F C+ C + F Q LN H++T
Sbjct: 12 CDRRFSQKTNLDTHIRI----HTGQKPFQCRICMRNFSQQASLNAHIRT 56
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 464 LEQRFVC--QYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+E+ + C + C++ F L H+R+H+ P++C C F+ +++LN H +T
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQ----KPFQCRICMRNFSQQASLNAHIRT 56
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 203 VCDICSA---EVIHLGTHQKVAHSG-VTYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKK 258
C+IC +V HL H K++HSG Y+C C ++F R +M+ H+++ + K
Sbjct: 9 ACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS--HDGSVGKP 65
Query: 259 FVCQYCNKEFPFQGYLNKHMK 279
++CQ C K F +LN H+K
Sbjct: 66 YICQSCGKGFSRPDHLNGHIK 86
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 794 CDICSA---EVVHLAIHKKHSHSGQY-HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTY 849
C+IC +V HL HK SHSG+ + CP CG +F RK + H++ + K Y
Sbjct: 10 CEICGKIFRDVYHLNRHKL-SHSGEKPYSCPVCGLRFKRKDRMSYHVR--SHDGSVGKPY 66
Query: 850 ICEYCHKEFTFYNYLRRHMR-VHTN 873
IC+ C K F+ ++L H++ VH+
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 43/113 (38%), Gaps = 33/113 (29%)
Query: 138 CEVCGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICGFYHKHKKMIYRHIKEHIEPK 197
CE+CGK F +L RH +H E+ Y+ C +CG K K + H++ H
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYS-------CPVCGLRFKRKDRMSYHVRSHD--- 59
Query: 198 KQEKKVCDICSAEVIHLGTHQKVAHSGVTYNCKFCSMKFTRVGQMNIHIKTVH 250
G Y C+ C F+R +N HIK VH
Sbjct: 60 -----------------------GSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 429 AAHSGVCYDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLR 488
+ SGV C CGK F LN H L H E+ + C C F + H+R
Sbjct: 3 SGSSGVA--CEICGKIFRDVYHLNRH----KLSHSGEKPYSCPVCGLRFKRKDRMSYHVR 56
Query: 489 VHSNDVQVPHPYKCTACNAAFNTKSALNVHRK 520
H D V PY C +C F+ LN H K
Sbjct: 57 SH--DGSVGKPYICQSCGKGFSRPDHLNGHIK 86
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 560 AGEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMH 619
+GE+ ++C +C F + R+ H+R+ H+ K +C C K F+ L HIKQ+H
Sbjct: 31 SGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Query: 620 GG 621
G
Sbjct: 90 SG 91
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 818 VCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNE--K 875
C CGK F L H L H EK Y C C F + + H+R H K
Sbjct: 9 ACEICGKIFRDVYHLNRH----KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 876 PYKCKDCGAAFNHNVSLKNH 895
PY C+ CG F+ L H
Sbjct: 65 PYICQSCGKGFSRPDHLNGH 84
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 656 TCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTH--RVER 713
CE C K FR L H K H E P C VCG F K+ + H+R+H V +
Sbjct: 9 ACEICGKIFRDVYHLNRH-KLSHSGEKPYS---CPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 714 KYKC-VCGDGFNFNVSLKVHM 733
Y C CG GF+ L H+
Sbjct: 65 PYICQSCGKGFSRPDHLNGHI 85
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 11 EEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGG 70
E+ ++C +C F + R+ H+R+ H+ K +C C K F+ L HIKQ+H G
Sbjct: 33 EKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 22/48 (45%)
Query: 851 CEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNS 898
CE C K F +L RH H+ EKPY C CG F + H S
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS 57
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 422 HLQQHQKAAHSGVCYDCTFCGKGFTRKAELNIHIKAVH 459
H++ H + G Y C CGKGF+R LN HIK VH
Sbjct: 54 HVRSHDGSV--GKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 38/119 (31%), Gaps = 32/119 (26%)
Query: 560 AGEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMH 619
+G C IC +F L H + EKP C VC F + ++ H++
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYS---CPVCGLRFKRKDRMSYHVRSHD 59
Query: 620 GGGQTDYVREKEVCEICSARVVNLAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVH 678
G Y+ C+ C K F R L H+K VH
Sbjct: 60 GSVGKPYI-----------------------------CQSCGKGFSRPDHLNGHIKQVH 89
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 13/90 (14%)
Query: 105 TCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTH--RVER 162
CE C K FR L H K H E P C VCG F K+ + H+R+H V +
Sbjct: 9 ACEICGKIFRDVYHLNRH-KLSHSGEKPYS---CPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 163 KYNGFESAALCFICGFYHKHKKMIYRHIKE 192
Y +C CG + HIK+
Sbjct: 65 PY-------ICQSCGKGFSRPDHLNGHIKQ 87
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 37/120 (30%), Gaps = 32/120 (26%)
Query: 8 SVREEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQM 67
S C IC +F L H + EKP C VC F + ++ H++
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYS---CPVCGLRFKRKDRMSYHVRSH 58
Query: 68 HGGGQTDYVREKEVCEICSARVVNLAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVH 127
G Y+ C+ C K F R L H+K VH
Sbjct: 59 DGSVGKPYI-----------------------------CQSCGKGFSRPDHLNGHIKQVH 89
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 817 HVCPH--CGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVHT 872
H C + CGK +T+ + L+ H++ H EK Y C++ C +F + L RH R HT
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLR----THTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 62
Query: 873 NEKPYKCKDCGAAFNHNVSLKNH 895
+P++C+ C AF+ + L H
Sbjct: 63 GHRPFQCQKCDRAFSRSDHLALH 85
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 848 TYICEY--CHKEFTFYNYLRRHMRVHTNEKPYKC--KDCGAAFNHNVSLKNH 895
T+ C+Y C K +T ++L+ H+R HT EKPY C CG F + L H
Sbjct: 6 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH 57
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 437 DCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY--CNKDFPFMKYLKRHLRVHSNDV 494
D CGK +T+ + L H++ H E+ + C + C F L RH R H+
Sbjct: 10 DYAGCGKTYTKSSHLKAHLRT----HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR 65
Query: 495 QVPHPYKCTACNAAFNTKSALNVHRK 520
P++C C+ AF+ L +H K
Sbjct: 66 ----PFQCQKCDRAFSRSDHLALHMK 87
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 656 TCEY--CVKPFRRTQELRNHVKAVHLTETPEERPRCEV--CGKTFGLKEYLRRHMRTHRV 711
TC+Y C K + ++ L+ H++ T T E+ C+ CG F + L RH R H
Sbjct: 8 TCDYAGCGKTYTKSSHLKAHLR----THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 63
Query: 712 ERKYKCV-CGDGFNFNVSLKVHMAK 735
R ++C C F+ + L +HM +
Sbjct: 64 HRPFQCQKCDRAFSRSDHLALHMKR 88
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 204 CDICSAEVIHLGTHQKVAHSGVTYNCKF--CSMKFTRVGQMNIHIKTVHLKHMLEKKFVC 261
C + HL H + Y+C + C KF R ++ H + KH + F C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR----KHTGHRPFQC 69
Query: 262 QYCNKEFPFQGYLNKHMK 279
Q C++ F +L HMK
Sbjct: 70 QKCDRAFSRSDHLALHMK 87
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 141 CGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICGFYHKHKKMIYRHIKEHIEPKKQE 200
CGKT+ +L+ H+RTH E+ Y+ CG+ + RH ++H + +
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDG-----CGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 201 KKVCDICSAEVIHLGTHQK 219
+ CD + HL H K
Sbjct: 69 CQKCDRAFSRSDHLALHMK 87
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 794 CDICSAEVVHLAIHKKHSHSGQ--YHV-CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYI 850
C + HL H + +H+G+ YH CG KF R EL H + KH + +
Sbjct: 14 CGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYR----KHTGHRPFQ 68
Query: 851 CEYCHKEFTFYNYLRRHMRVH 871
C+ C + F+ ++L HM+ H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 422 HLQQHQKAAHSGVCYDCTF--CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPF 479
HL+ H + Y C + CG F R EL H + KH + F CQ C++ F
Sbjct: 23 HLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR----KHTGHRPFQCQKCDRAFSR 78
Query: 480 MKYLKRHLRVH 490
+L H++ H
Sbjct: 79 SDHLALHMKRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 817 HVCPH--CGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVHT 872
H C + CGK +T+ + L+ H++ H EK Y C++ C +F + L RH R HT
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLR----THTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 873 NEKPYKCKDCGAAFNHNVSLKNH 895
+P++C+ C AF+ + L H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALH 84
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 848 TYICEY--CHKEFTFYNYLRRHMRVHTNEKPYKC--KDCGAAFNHNVSLKNH 895
T+ C+Y C K +T ++L+ H+R HT EKPY C CG F + L H
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH 56
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 437 DCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY--CNKDFPFMKYLKRHLRVHSNDV 494
D CGK +T+ + L H++ H E+ + C + C F L RH R H+
Sbjct: 9 DYAGCGKTYTKSSHLKAHLRT----HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR 64
Query: 495 QVPHPYKCTACNAAFNTKSALNVHRK 520
P++C C+ AF+ L +H K
Sbjct: 65 ----PFQCQKCDRAFSRSDHLALHMK 86
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 656 TCEY--CVKPFRRTQELRNHVKAVHLTETPEERPRCEV--CGKTFGLKEYLRRHMRTHRV 711
TC+Y C K + ++ L+ H++ T T E+ C+ CG F + L RH R H
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLR----THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 62
Query: 712 ERKYKCV-CGDGFNFNVSLKVHMAK 735
R ++C C F+ + L +HM +
Sbjct: 63 HRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 204 CDICSAEVIHLGTHQKVAHSGVTYNCKF--CSMKFTRVGQMNIHIKTVHLKHMLEKKFVC 261
C + HL H + Y+C + C KF R ++ H + KH + F C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR----KHTGHRPFQC 68
Query: 262 QYCNKEFPFQGYLNKHMK 279
Q C++ F +L HMK
Sbjct: 69 QKCDRAFSRSDHLALHMK 86
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 141 CGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICGFYHKHKKMIYRHIKEHIEPKKQE 200
CGKT+ +L+ H+RTH E+ Y+ CG+ + RH ++H + +
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDG-----CGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 201 KKVCDICSAEVIHLGTHQK 219
+ CD + HL H K
Sbjct: 68 CQKCDRAFSRSDHLALHMK 86
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Query: 787 KRKEKKICDICS-----AEVVHLAIHKKHSHSGQ--YHV-CPHCGKKFTRKAELQLHIKG 838
KR CD + HL H + +H+G+ YH CG KF R EL H +
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYR- 58
Query: 839 IHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVH 871
KH + + C+ C + F+ ++L HM+ H
Sbjct: 59 ---KHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 422 HLQQHQKAAHSGVCYDCTF--CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPF 479
HL+ H + Y C + CG F R EL H + KH + F CQ C++ F
Sbjct: 22 HLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR----KHTGHRPFQCQKCDRAFSR 77
Query: 480 MKYLKRHLRVH 490
+L H++ H
Sbjct: 78 SDHLALHMKRH 88
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 822 CGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKD 881
CGK FT K++ H+ +HL + Y C C K+F ++L HM++HT KPY+C
Sbjct: 15 CGKSFTHKSQRDRHMS-MHLG---LRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNI 70
Query: 882 CGAAFNHNVSLKNHKNS 898
C F S H S
Sbjct: 71 CAKRFMWRDSFHRHVTS 87
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 441 CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPY 500
CGK FT K++ + H+ ++HL + + C C K F +L H+++H+ PY
Sbjct: 15 CGKSFTHKSQRDRHM-SMHLG---LRPYGCGVCGKKFKMKHHLVGHMKIHTG----IKPY 66
Query: 501 KCTACNAAFNTKSALNVHRKTC 522
+C C F + + + H +C
Sbjct: 67 ECNICAKRFMWRDSFHRHVTSC 88
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 660 CVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYKC-V 718
C K F + H+ ++HL P C VCGK F +K +L HM+ H + Y+C +
Sbjct: 15 CGKSFTHKSQRDRHM-SMHLGLRPYG---CGVCGKKFKMKHHLVGHMKIHTGIKPYECNI 70
Query: 719 CGDGFNFNVSLKVHMAKCAFYLKSLEKE 746
C F + S H+ C ++ + E
Sbjct: 71 CAKRFMWRDSFHRHVTSCTKSYEAAKAE 98
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 141 CGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICGFYHKHKKMIYRHIKEHIEPKKQE 200
CGK+F K RHM H R Y C +CG K K + H+K H K E
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYG-------CGVCGKKFKMKHHLVGHMKIHTGIKPYE 67
Query: 201 KKVCDICSAEVI 212
C+IC+ +
Sbjct: 68 ---CNICAKRFM 76
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 109 CVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYNGFE 168
C K F + H+ ++HL P C VCGK F +K +L HM+ H + Y
Sbjct: 15 CGKSFTHKSQRDRHM-SMHLGLRPYG---CGVCGKKFKMKHHLVGHMKIHTGIKPYE--- 67
Query: 169 SAALCFICGFYHKHKKMIYRHI 190
C IC + +RH+
Sbjct: 68 ----CNICAKRFMWRDSFHRHV 85
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 848 TYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
+++CE C + F +L+RH R HTNEKPY C C AF L H
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 468 FVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVH 518
FVC+ C + F ++LKRH R H+N+ PY C CN AF + L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNE----KPYPCGLCNRAFTRRDLLIRH 49
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 689 CEVCGKTFGLKEYLRRHMRTHRVERKYKC-VCGDGFNFNVSLKVHMAK 735
CEVC + F +E+L+RH R+H E+ Y C +C F L H K
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 13 AFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGG 70
+F C +C F + L H R+ NEKP C +C + F R L H +++H G
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYP---CGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 564 AFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGG 621
+F C +C F + L H R+ NEKP C +C + F R L H +++H G
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYP---CGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 138 CEVCGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICGFYHKHKKMIYRHIKE 192
CEVC + F +E+L+RH R+H E+ Y C +C + ++ RH ++
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYP-------CGLCNRAFTRRDLLIRHAQK 52
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 104 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRH 154
F CE C + F R + L+ H ++ H E P C +C + F ++ L RH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS-HTNEKPYP---CGLCNRAFTRRDLLIRH 49
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 655 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRH 705
F CE C + F R + L+ H ++ H E P C +C + F ++ L RH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS-HTNEKPYP---CGLCNRAFTRRDLLIRH 49
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 818 VCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRH-MRVHTN 873
VC C + F R+ L+ H + H EK Y C C++ FT + L RH ++H+
Sbjct: 4 VCEVCTRAFARQEHLKRHYRS----HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 412 ICDICC---AEVLHLQQHQKAAHSGVCYDCTFCGKGFTRKAELNIHIKAVH 459
+C++C A HL++H ++ + Y C C + FTR+ L H + +H
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 51/120 (42%), Gaps = 17/120 (14%)
Query: 789 KEKKICDICSAEVVHLAIHKKHSHSGQ---------YHVCPHCGKKFTRKAELQLHIKGI 839
+ KK CD + + L H H G + CP GK F K +L HI+
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-- 83
Query: 840 HLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVHTNEKPYKC--KDCGAAFNHNVSLKNH 895
H EK + C + C K F L+ H R HT EKP+KC + C F ++ K H
Sbjct: 84 --VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKH 141
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 820 PHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVHTNEK 875
P CGK F R L++H + H EK + CE+ C + F + ++HM VHT++K
Sbjct: 96 PGCGKIFARSENLKIHKR----THTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 62/158 (39%), Gaps = 36/158 (22%)
Query: 581 CGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGGG--QTDYVREKEVCEICSA 638
C + +P+KS C + F+T L H+ H GG Q ++V E C
Sbjct: 16 CKWIDEAQLSRPKKS-----CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEEC----- 65
Query: 639 RVVNLAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGL 698
PR K F+ +L NH++ VH E P P CGK F
Sbjct: 66 --------------PREG-----KSFKAKYKLVNHIR-VHTGEKPFPCP-FPGCGKIFAR 104
Query: 699 KEYLRRHMRTHRVERKYKC---VCGDGFNFNVSLKVHM 733
E L+ H RTH E+ +KC C F + K HM
Sbjct: 105 SENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 436 YDCTF--CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY--CNKDFPFMKYLKRHLRVHS 491
+ C F CGK F R L IH + H E+ F C++ C++ F K+H+ VH+
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRT----HTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Query: 492 NDVQVP 497
+D P
Sbjct: 147 SDKSGP 152
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 54/137 (39%), Gaps = 33/137 (24%)
Query: 30 CGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGGG--QTDYVREKEVCEICSA 87
C + +P+KS C + F+T L H+ H GG Q ++V E C
Sbjct: 16 CKWIDEAQLSRPKKS-----CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEEC----- 65
Query: 88 RVVNLAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGL 147
PR K F+ +L NH++ VH E P P CGK F
Sbjct: 66 --------------PREG-----KSFKAKYKLVNHIR-VHTGEKPFPCP-FPGCGKIFAR 104
Query: 148 KEYLRRHMRTHRVERKY 164
E L+ H RTH E+ +
Sbjct: 105 SENLKIHKRTHTGEKPF 121
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 441 CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY--C---NKDFPFMKYLKRHLRVHSNDVQ 495
C + F+ EL H+ H+ + VC + C K F L H+RVH+ +
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 496 VPHPYKCTACNAAFNTKSALNVHRKT 521
P P+ C F L +H++T
Sbjct: 91 FPCPF--PGCGKIFARSENLKIHKRT 114
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 820 PHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVHTNEKPY 877
P C K +T+ + L+ H++ H EK Y C + C F + L RH R HT KP+
Sbjct: 21 PGCTKVYTKSSHLKAHLR----THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPF 76
Query: 878 KCKDCGAAFNHN----VSLKNHKN 897
+C C +F+ + + +K H+N
Sbjct: 77 QCGVCNRSFSRSDHLALHMKRHQN 100
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 844 QLEKTYI--CEY--CHKEFTFYNYLRRHMRVHTNEKPYKC--KDCGAAFNHNVSLKNH 895
LEK I C+Y C K +T ++L+ H+R HT EKPYKC + C F + L H
Sbjct: 9 DLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRH 66
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 406 KKREMKICDI-CCAEVLHLQQHQKA---AHSG-VCYDCTF--CGKGFTRKAELNIHIKAV 458
+KR + CD C +V H KA H+G Y CT+ C F R EL H +
Sbjct: 11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR-- 68
Query: 459 HLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSN 492
KH + F C CN+ F +L H++ H N
Sbjct: 69 --KHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 437 DCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY--CNKDFPFMKYLKRHLRVHSNDV 494
D C K +T+ + L H++ H E+ + C + C+ F L RH R H+
Sbjct: 19 DYPGCTKVYTKSSHLKAHLRT----HTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG-- 72
Query: 495 QVPHPYKCTACNAAFNTKSALNVHRK 520
P++C CN +F+ L +H K
Sbjct: 73 --AKPFQCGVCNRSFSRSDHLALHMK 96
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 657 CEY--CVKPFRRTQELRNHVKAVHLTETPEERPRC--EVCGKTFGLKEYLRRHMRTHRVE 712
C+Y C K + ++ L+ H++ T T E+ +C E C F + L RH R H
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLR----THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
Query: 713 RKYKC-VCGDGFNFNVSLKVHMAK 735
+ ++C VC F+ + L +HM +
Sbjct: 74 KPFQCGVCNRSFSRSDHLALHMKR 97
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 213 HLGTHQKVAHSGVTYNCKF--CSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPF 270
HL H + Y C + C +F R ++ H + KH K F C CN+ F
Sbjct: 32 HLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR----KHTGAKPFQCGVCNRSFSR 87
Query: 271 QGYLNKHMK 279
+L HMK
Sbjct: 88 SDHLALHMK 96
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 100 EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHR 159
+P + T E C F R+ EL H + H P + C VC ++F ++L HM+ H+
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRHYRK-HTGAKPFQ---CGVCNRSFSRSDHLALHMKRHQ 99
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 651 EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHR 710
+P + T E C F R+ EL H + H P + C VC ++F ++L HM+ H+
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRHYRK-HTGAKPFQ---CGVCNRSFSRSDHLALHMKRHQ 99
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 847 KTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKN 897
K + C C + F+ ++L H+R HT EKP+ C CG F + K H++
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD 52
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 104 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRH 154
F C C++ F R+ L H++ T T E+ C++CG+ F + +RH
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR----THTGEKPFACDICGRKFARSDERKRH 50
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 655 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRH 705
F C C++ F R+ L H++ T T E+ C++CG+ F + +RH
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR----THTGEKPFACDICGRKFARSDERKRH 50
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 227 YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKH 277
+ C+ C F+R + HI+T H EK F C C ++F +H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDICGRKFARSDERKRH 50
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRH 486
+ C C + F+R L HI+ H E+ F C C + F KRH
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDICGRKFARSDERKRH 50
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 14 FTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFA 55
F CRIC F + L H+RT EKP C +C + FA
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKP---FACDICGRKFA 42
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 565 FTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFA 606
F CRIC F + L H+RT EKP C +C + FA
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKP---FACDICGRKFA 42
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 688 RCEVCGKTFGLKEYLRRHMRTHRVERKYKC-VCGDGF 723
+C +C + F ++L H+RTH E+ + C +CG F
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 816 YHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEK 875
Y++C C + + L+ H H EK Y C YC K F Y +H HT E+
Sbjct: 22 YYICIVCKRSYVCLTSLRRHFNI----HSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER 77
Query: 876 PYKCKDCGAAFNHNVSLKNHKNS 898
Y+C CG +F + + +H S
Sbjct: 78 RYQCLACGKSFINYQFMSSHIKS 100
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 419 EVLHLQQHQKAAHSGVCYDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFP 478
+V H ++ V Y C C + + L H H E+++ C+YC K FP
Sbjct: 6 KVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNI----HSWEKKYPCRYCEKVFP 61
Query: 479 FMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+Y +H H+ + + Y+C AC +F ++ H K+
Sbjct: 62 LAEYRTKHEIHHTGERR----YQCLACGKSFINYQFMSSHIKS 100
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 13/121 (10%)
Query: 210 EVIHLGTHQKVAHSGVTYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFP 269
+V H ++ + V Y C C + + + H H EKK+ C+YC K FP
Sbjct: 6 KVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNI----HSWEKKYPCRYCEKVFP 61
Query: 270 FQGYLNKHMKTXXXXXXXXXXXXXVTYTCKQCNLTFTNKHLFRNHKLFEADEFFDGEVPL 329
Y KH Y C C +F N +H + G+ L
Sbjct: 62 LAEYRTKH---------EIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKL 112
Query: 330 Y 330
Y
Sbjct: 113 Y 113
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 655 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERK 714
+ C C + + LR H + E++ C C K F L EY +H H ER+
Sbjct: 23 YICIVCKRSYVCLTSLRRHFN----IHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 715 YKCV-CGDGF 723
Y+C+ CG F
Sbjct: 79 YQCLACGKSF 88
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 46 LCFVCAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVVNLAEHKLCHE----- 100
+C VC + + +L H +H +K C C +V LAE++ HE
Sbjct: 24 ICIVCKRSYVCLTSLRRHF-NIHSW------EKKYPCRYCE-KVFPLAEYRTKHEIHHTG 75
Query: 101 PPRFTCEYCVKPFRRTQELRNHVKAVH 127
R+ C C K F Q + +H+K+VH
Sbjct: 76 ERRYQCLACGKSFINYQFMSSHIKSVH 102
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 597 LCFVCAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVVNLAEHKLCHE----- 651
+C VC + + +L H +H +K C C +V LAE++ HE
Sbjct: 24 ICIVCKRSYVCLTSLRRHF-NIHSW------EKKYPCRYCE-KVFPLAEYRTKHEIHHTG 75
Query: 652 PPRFTCEYCVKPFRRTQELRNHVKAVH 678
R+ C C K F Q + +H+K+VH
Sbjct: 76 ERRYQCLACGKSFINYQFMSSHIKSVH 102
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y+C+YC K F L RH R+HT EKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 465 EQRFVCQYCNKDFPFMKYLKRHLRVHSND 493
E+ +VC YC K F L RH R+H+ +
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGE 38
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 138 CEVCGKTFGLKEYLRRHMRTHRVER 162
C+ CGK FGL L RH R H E+
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 689 CEVCGKTFGLKEYLRRHMRTHRVER 713
C+ CGK FGL L RH R H E+
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEK 39
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 25/45 (55%)
Query: 851 CEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
C YC K F YL H+R HT EKPYKC+ C A SL+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 470 CQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVH 518
C YC K F YL HLR H+ + PYKC C A K++L H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEK----PYKCEFCEYAAAQKTSLRYH 51
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 689 CEVCGKTFGLKEYLRRHMRTHRVERKYKC-VCGDGFNFNVSLKVHMAK 735
C CGK F YL H+RTH E+ YKC C SL+ H+ +
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLER 54
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 437 DCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVH 490
+C++CGK F LNIH++ H E+ + C++C L+ HL H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRT----HTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 822 CGKKFTRKAELQLHIKGIHLKHQLEKTYIC--EYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
CG + + +LQ H+ KH EK + C E C K FT ++L RH HT EK + C
Sbjct: 11 CGAAYNKNWKLQAHLS----KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTC 66
Query: 880 KD--CGAAFNHNVSLKNHKN 897
C F ++K H N
Sbjct: 67 DSDGCDLRFTTKANMKKHFN 86
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query: 436 YDCTF--CGKGFTRKAELNIHIKAVHLKHQLEQRFVC--QYCNKDFPFMKYLKRHLRVHS 491
Y C+F CG + + +L H+ KH E+ F C + C K F + +L RH H+
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLS----KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT 59
Query: 492 NDVQVPHPYKCTA--CNAAFNTKSALNVH 518
+ + C + C+ F TK+ + H
Sbjct: 60 GEKN----FTCDSDGCDLRFTTKANMKKH 84
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 654 RFTCEY--CVKPFRRTQELRNHVKAVHLTETPEERP---RCEVCGKTFGLKEYLRRHMRT 708
R+ C + C + + +L+ HL++ E+P + E C K F +L RH T
Sbjct: 3 RYICSFADCGAAYNKNWKLQ-----AHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT 57
Query: 709 HRVERKYKCVCGDGFNFNVSLKVHMAK 735
H E+ + C DG + + K +M K
Sbjct: 58 HTGEKNFTCD-SDGCDLRFTTKANMKK 83
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 811 SHSGQY-HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRH 867
+H+G+ + C HC K F +K L +H K H + + ++C C K FT N + RH
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRH 486
Y C+ C K F +K L++H K H + + FVC C K F + RH
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 30/67 (44%)
Query: 462 HQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
H E+ + C +C+K F + L H + + + VP + C+ C F ++ + H
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 69
Query: 522 CPNLELL 528
C + +
Sbjct: 70 CAGPDGV 76
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%)
Query: 104 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRH 154
+ C +C K FR+ Q L H K H C CGKTF + + RH
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%)
Query: 655 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRH 705
+ C +C K FR+ Q L H K H C CGKTF + + RH
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 227 YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKH 277
Y C C F + +++H K H + + FVC C K F + + +H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 822 CGKKFTRKAELQLHIKGIHLKHQLEKTYIC--EYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
CG + + +LQ H+ KH EK + C E C K FT ++L RH HT EK + C
Sbjct: 20 CGAAYNKNWKLQAHL----CKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTC 75
Query: 880 KD--CGAAFNHNVSLKNHKN 897
C F ++K H N
Sbjct: 76 DSDGCDLRFTTKANMKKHFN 95
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 4 ELAYSVREEAFTCRI--CQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLT 61
E A V + + C C A ++K +L HL EKP F C + + +
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKP------FPCKEEGCEKGFTS 56
Query: 62 LHIKQMHG---GGQTDYVREKEVCEICSARVVNLAEH-------KLCHEPPRFTCEYCVK 111
LH H G+ ++ + + C++ N+ +H K+C F E C K
Sbjct: 57 LHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHF--ENCGK 114
Query: 112 PFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTH 158
F++ +L+ H + H + P E P E C K F L L+RH + H
Sbjct: 115 AFKKHNQLKVH-QFSHTQQLPYECPH-EGCDKRFSLPSRLKRHEKVH 159
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 822 CGKKFTRKAELQLHIKGIHLKHQLEKTYIC--EYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
C +FT KA ++ H H Y+C E C K F +N L+ H HT + PY+C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKIC--VYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC 137
Query: 880 --KDCGAAFNHNVSLKNHK 896
+ C F+ LK H+
Sbjct: 138 PHEGCDKRFSLPSRLKRHE 156
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 822 CGKKFTRKAELQLHIKGIHLKHQLEKTYIC--EYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
CGK F + +L++H H + Y C E C K F+ + L+RH +VH Y C
Sbjct: 112 CGKAFKKHNQLKVH----QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPC 164
Query: 880 K 880
K
Sbjct: 165 K 165
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 822 CGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHM-RVHTNEKPYK 878
C K ++R L+ H++ H EK Y+CE+ C K F+ + +H R H+NEKPY
Sbjct: 75 CRKSYSRLENLKTHLRS----HTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYV 130
Query: 879 CK--DCGAAFNHNVSLKNH 895
CK C + SL+ H
Sbjct: 131 CKLPGCTKRYTDPSSLRKH 149
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 839 IHLK-HQLEKTYIC--EYCHKEFTFYNYLRRHMRVHTNEKPYKC--KDCGAAFNHNVSLK 893
+H++ H EK + C E C K ++ L+ H+R HT EKPY C + C AF++
Sbjct: 57 VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRA 116
Query: 894 NHKN 897
H+N
Sbjct: 117 KHQN 120
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 76/194 (39%), Gaps = 51/194 (26%)
Query: 437 DCTF--CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY--CNKDF-PFMK--YLKRHLRV 489
DC + C + F + +L HI + H+ H + FVC + C+++ PF L H+R
Sbjct: 3 DCRWDGCSQEFDSQEQLVHHINSEHI-HGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 490 HSNDVQVPHPYKCT--ACNAAFNTKSALNVHRKTCPNLELLNRDLLPNQTGTDDEKKLEQ 547
H+ + P+KCT C +++ L H L + TG
Sbjct: 62 HTGEK----PHKCTFEGCRKSYSRLENLKTH--------------LRSHTG--------- 94
Query: 548 KEMAKKPTVTEPAGEEAFTCRICQAVFDKYVRLCGHL-RTVHNEKPEKSNLCFVCAKVFA 606
+KP + E G C F H RT NEKP L C K +
Sbjct: 95 ----EKPYMCEHEG--------CSKAFSNASDRAKHQNRTHSNEKPYVCKL-PGCTKRYT 141
Query: 607 TRATLTLHIKQMHG 620
++L H+K +HG
Sbjct: 142 DPSSLRKHVKTVHG 155
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 9/110 (8%)
Query: 23 FDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGGGQTDYVREKEVC 82
F L H+R EKP K C K ++ L H++ G+ Y+ E E C
Sbjct: 49 FKAQYMLVVHMRRHTGEKPHKCTF-EGCRKSYSRLENLKTHLRSH--TGEKPYMCEHEGC 105
Query: 83 EICSARVVNLAEHKL---CHEPPRFTCEY--CVKPFRRTQELRNHVKAVH 127
+ + A+H+ +E P + C+ C K + LR HVK VH
Sbjct: 106 SKAFSNASDRAKHQNRTHSNEKP-YVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 9/110 (8%)
Query: 574 FDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGGGQTDYVREKEVC 633
F L H+R EKP K C K ++ L H++ G+ Y+ E E C
Sbjct: 49 FKAQYMLVVHMRRHTGEKPHKCTF-EGCRKSYSRLENLKTHLRSH--TGEKPYMCEHEGC 105
Query: 634 EICSARVVNLAEHKL---CHEPPRFTCEY--CVKPFRRTQELRNHVKAVH 678
+ + A+H+ +E P + C+ C K + LR HVK VH
Sbjct: 106 SKAFSNASDRAKHQNRTHSNEKP-YVCKLPGCTKRYTDPSSLRKHVKTVH 154
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 847 KTYIC--EYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
+ Y C E C + F+ + L RH+R+HT +KP++C+ C F+ + L H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 817 HVCP--HCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHT 872
+ CP C ++F+R EL HI+ H +K + C C + F+ ++L H+R HT
Sbjct: 20 YACPVESCDRRFSRSDELTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 107 EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTH 158
E C + F R+ EL H++ +H + P + C +C + F ++L H+RTH
Sbjct: 25 ESCDRRFSRSDELTRHIR-IHTGQKPFQ---CRICMRNFSRSDHLTTHIRTH 72
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 658 EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTH 709
E C + F R+ EL H++ +H + P + C +C + F ++L H+RTH
Sbjct: 25 ESCDRRFSRSDELTRHIR-IHTGQKPFQ---CRICMRNFSRSDHLTTHIRTH 72
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 441 CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHS 491
C + F+R EL HI+ H ++ F C+ C ++F +L H+R H+
Sbjct: 27 CDRRFSRSDELTRHIRI----HTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 232 CSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMKT 280
C +F+R ++ HI+ H +K F C+ C + F +L H++T
Sbjct: 27 CDRRFSRSDELTRHIRI----HTGQKPFQCRICMRNFSRSDHLTTHIRT 71
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C+ C KEF+ ++L+ H RVHT EKP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 847 KTYICEYCHKEFTFYNYLRRHMRVHTNEK 875
K + CEYC+K F F + L+ H+R+HTNEK
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 468 FVCQYCNKDFPFMKYLKRHLRVHSND 493
F C+YCNK F F L+ HLR+H+N+
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNE 35
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK YIC C K F ++L RH R+HT EKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C+ CHK F + + L H R+HT EKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 820 PHCGKKFTRKAELQLHIKGIHLKHQLEKTYICE--YCHKEFTFYNYLRRHMRVHTNEKPY 877
P CG+ F+ + L H K +H +K++ C C K F F +L+ HM++H++ + Y
Sbjct: 13 PGCGRIFSNRQYLNHHKK---YQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 69
Query: 878 KCKDCGAA 885
C+ G +
Sbjct: 70 ICEFSGPS 77
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 429 AAHSGVCYDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQ--YCNKDFPFMKYLKRH 486
+ SG+ D CG+ F+ + LN H K H+ HQ + F C C K F F K+LK H
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHI-HQ--KSFSCPEPACGKSFNFKKHLKEH 59
Query: 487 LRVHSN 492
+++HS+
Sbjct: 60 MKLHSD 65
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 660 CVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYKC 717
C + F Q L +H K H+ + P CGK+F K++L+ HM+ H R Y C
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPE-PACGKSFNFKKHLKEHMKLHSDTRDYIC 71
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 109 CVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKY 164
C + F Q L +H K H+ + P CGK+F K++L+ HM+ H R Y
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPE-PACGKSFNFKKHLKEHMKLHSDTRDY 69
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 692 CGKTFGLKEYLRRHMRTHRVERK-YKC---VCGDGFNFNVSLKVHM 733
CG+ F ++YL H + + +K + C CG FNF LK HM
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 467 RFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+++C+ C LK+H+R H+ DV+ PY CT CN +F TK L H K+
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHT-DVR---PYHCTYCNFSFKTKGNLTKHMKS 51
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 849 YICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNS 898
YICE C + L++H+R HT+ +PY C C +F +L H S
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 227 YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMKT 280
Y C+ C ++ + + HI+T H + + C YCN F +G L KHMK+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRT----HTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK + CE C K FT ++L H RVHT EKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C C K F +YL RH R+HT EKP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 874 EKPYKCKDCGAAFNHNVSLKNHK 896
EKPYKC +CG F HN L H+
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQ 32
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK YIC C K FT + L +H ++HT +KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C C K F+ + L RH R+HT EKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 874 EKPYKCKDCGAAFNHNVSLKNHK 896
EKPYKC +CG AF+ L H+
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQ 32
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
E+ + C +C K + + L RH R H +P C +CG F + H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH 51
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 104 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTH 158
F C +C K +R L H +A HL P C CGK F + + RH++ H
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRA-HLGYRPRS---CPECGKCFRDQSEVNRHLKVH 55
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 655 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTH 709
F C +C K +R L H +A HL P C CGK F + + RH++ H
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRA-HLGYRPRS---CPECGKCFRDQSEVNRHLKVH 55
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 438 CTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSN 492
C FCGK + + L+ H +A HL ++ C C K F + RHL+VH N
Sbjct: 7 CNFCGKTYRDASGLSRHRRA-HLGYRPRS---CPECGKCFRDQSEVNRHLKVHQN 57
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 465 EQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
E+ F C +C K + L RH R H P C C F +S +N H K
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGY----RPRSCPECGKCFRDQSEVNRHLKV 54
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK + CE C K FT + L H RVHT EKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 874 EKPYKCKDCGAAFNHNVSLKNHK 896
EKP+KC++CG F N L +H+
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQ 32
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
E+ YIC C K FT + L +H ++HT EKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y CE C K F + L+ H R+HT EKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 874 EKPYKCKDCGAAFNHNVSLKNHK 896
EKPY C++CG AF H+ L+ H+
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQ 32
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 811 SHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHM-R 869
S S + H+CP CG+ F K + H++ +H + + C+YC F L RH+ +
Sbjct: 23 SASAECHLCPVCGESFASKGAQERHLRLLHAA----QVFPCKYCPATFYSSPGLTRHINK 78
Query: 870 VHTNE 874
H +E
Sbjct: 79 CHPSE 83
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 432 SGVCYDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHL 487
S C+ C CG+ F K H++ +H Q F C+YC F L RH+
Sbjct: 25 SAECHLCPVCGESFASKGAQERHLRLLHAA----QVFPCKYCPATFYSSPGLTRHI 76
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 849 YICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNSSCPKRD 904
++C C + F RH+R+ + + CK C A F + L H N P +
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN 84
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C+ C K F+ + L +H RVH+ EKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 847 KTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
K Y C C K F+ + L RH RVHT EKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 847 KTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
K Y+C C K F+ Y+ L H +HT EKP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C C K FT ++L RH RVHT KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 874 EKPYKCKDCGAAFNHNVSLKNHK 896
EKPYKC +CG F N L H+
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHR 32
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C+ C K F+ +L +H RVHT EKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 874 EKPYKCKDCGAAFNHNVSLKNHK 896
EKPY+CK+CG AF+ L H+
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQ 32
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C C K FT ++L H R+HT EKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 874 EKPYKCKDCGAAFNHNVSLKNH 895
EKPYKC +CG F N L NH
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNH 31
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C+ C K F + + L +H RVH+ EKP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Query: 847 KTYICEYCHKEFTFYNYLRRHMR-VHTNEKPYKCK 880
K YIC+ C K F+ ++L H++ VHT+E+P+KC+
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 433 GVCYDCTFCGKGFTRKAELNIHIKAVH 459
G Y C CGKGF+R LN HIK VH
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 30.0 bits (66), Expect = 7.1, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 104 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEV 140
+ C+ C K F R L H+K VH +E P +C+V
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPH---KCQV 46
Score = 30.0 bits (66), Expect = 7.1, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 655 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEV 691
+ C+ C K F R L H+K VH +E P +C+V
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPH---KCQV 46
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C C K FT ++L RH +HT EKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 874 EKPYKCKDCGAAFNHNVSLKNHKN 897
EKPYKC +CG F N L H+
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRG 33
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C+ C K FT +L +H + HT EKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 847 KTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
K++ C C + FT ++L +H R+HT EKP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 847 KTYICEYCHKEFTFYNYLRRHMRVHTNEK 875
K Y+C +C ++F L+RH+R+HT EK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.3 bits (77), Expect = 0.35, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C C K F+ +YL HMR H+ EKP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 134 ERPR-CEVCGKTFGLKEYLRRHMRTHRVER 162
E+P C CGK F K YL HMRTH E+
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 685 ERPR-CEVCGKTFGLKEYLRRHMRTHRVER 713
E+P C CGK F K YL HMRTH E+
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 874 EKPYKCKDCGAAFNHNVSLKNH 895
EKP+KCK+CG AF N+ L +H
Sbjct: 10 EKPFKCKECGKAFRQNIHLASH 31
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK + C+ C K F +L H+R+HT EKP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.9 bits (76), Expect = 0.41, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 847 KTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
K Y C C K F +YL HMR HT EKP
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 138 CEVCGKTFGLKEYLRRHMRTHRVER 162
C CGK F K YL HMRTH E+
Sbjct: 13 CSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 689 CEVCGKTFGLKEYLRRHMRTHRVER 713
C CGK F K YL HMRTH E+
Sbjct: 13 CSECGKAFRSKSYLIIHMRTHTGEK 37
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.9 bits (76), Expect = 0.42, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEK 875
EK Y C C K+F+ +YL H R+HT EK
Sbjct: 8 EKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 848 TYICEYCHKEFTFYNYLRRHMRVHTNEK 875
+++CE C + F YL+RH R HTNEK
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNEK 29
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 468 FVCQYCNKDFPFMKYLKRHLRVHSND 493
FVC+ C + F +YLKRH R H+N+
Sbjct: 3 FVCEVCTRAFARQEYLKRHYRSHTNE 28
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 138 CEVCGKTFGLKEYLRRHMRTHRVER 162
CEVC + F +EYL+RH R+H E+
Sbjct: 5 CEVCTRAFARQEYLKRHYRSHTNEK 29
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 689 CEVCGKTFGLKEYLRRHMRTHRVER 713
CEVC + F +EYL+RH R+H E+
Sbjct: 5 CEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNE 874
EK Y C C K F +L +H+RVHT E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVE 161
E+P C VCGK F L +L +H+R H E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVE 712
E+P C VCGK F L +L +H+R H E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C C K FT ++L RH +HT EKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 874 EKPYKCKDCGAAFNHNVSLKNHKN 897
EKPYKC +CG F N L H+
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRG 33
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C C K F+ + L H R HT EKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVER 162
E+P C CGKTF K L H RTH E+
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVER 713
E+P C CGKTF K L H RTH E+
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEK 39
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C C K FT + L H ++HT EKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 17/19 (89%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y+C+ CGK FT+K++L++H
Sbjct: 13 YECSICGKSFTKKSQLHVH 31
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
PY+C C AFNTKS L VH++T
Sbjct: 12 PYECNECQKAFNTKSNLMVHQRT 34
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 561 GEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMH 619
GE + C++C V+ C H T H ++ K C C K F + +T H+K +H
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSH-KRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 794 CDICSAEVVHLAIHKKH---SHSGQYHV--CPHCGKKFTRKAELQLHIKGIH 840
C +CS H++ +H SH V CP C K+FTRK + H+K IH
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 11 EEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMH 68
E + C++C V+ C H T H ++ K C C K F + +T H+K +H
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTSH-KRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 226 TYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMK 279
TY CK CS +T + H T H +++ K + C +C KEF + + H+K
Sbjct: 10 TYRCKVCSRVYTHISNFCRHYVTSHKRNV--KVYPCPFCFKEFTRKDNMTAHVK 61
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVH 459
Y C FC K FTRK + H+K +H
Sbjct: 41 YPCPFCFKEFTRKDNMTAHVKIIH 64
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C C K F L +H R+HT EKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 874 EKPYKCKDCGAAFNHNVSLKNHK 896
EKPY+C +CG AF +L H+
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQ 32
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK + C+ C K F + L RH VHT EKP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 874 EKPYKCKDCGAAFNHNVSLKNHK 896
EKPYKC+DCG +N ++L H+
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQ 32
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
+K Y C C K FT ++L RH +HT EKP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C C K F+ + L +H ++HT EKP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEK 875
EK++ C+ C K F + + LR H RVH EK
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK + C C K F+F++ L H R+HT E P
Sbjct: 8 EKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 874 EKPYKCKDCGAAFNHNVSLKNHKNSSCPKR 903
EKPYKC DCG AF L H+ S +R
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
PYKC+ C AF KS L++H+++
Sbjct: 12 PYKCSDCGKAFTRKSGLHIHQQS 34
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 436 YDCTFCGKGFTRKAELNIHIKA 457
Y C+ CGK FTRK+ L+IH ++
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQS 34
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 874 EKPYKCKDCGAAFNHNVSLKNHK 896
EKPYKC +CG F N L NH+
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQ 32
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C C K FT ++L H R+HT KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK + C C K F+F + L H R+HT E P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
P++C+ C AFNTKS L VH++T
Sbjct: 12 PFECSECQKAFNTKSNLIVHQRT 34
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK + C C K F + L H R HT EKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y CE C F L+ H+R+HT P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 874 EKPYKCKDCGAAFNHNVSLKNH 895
EKPY C+ CG F H +LK+H
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSH 30
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C C K FT + L H ++HT EKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C C K FTF + L H VHT KP
Sbjct: 8 EKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 30.0 bits (66), Expect = 7.2, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 872 TNEKPYKCKDCGAAFNHNVSLKNHK 896
+ EKPY C +CG AF L HK
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHK 30
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 851 CEYCHKEFTFYNYLRRHMRVHTNEK 875
C C K+FT L+RH+R+H+ EK
Sbjct: 5 CRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 470 CQYCNKDFPFMKYLKRHLRVHSND 493
C+ C K F LKRHLR+HS +
Sbjct: 5 CRECGKQFTTSGNLKRHLRIHSGE 28
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK + C C K F+ + L H R+HT EKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 848 TYICEYCHKEFTFYNYLRRHMRVHTNEK 875
+++CE C + F +L+RH R HTNEK
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 468 FVCQYCNKDFPFMKYLKRHLRVHSND 493
FVC+ C + F ++LKRH R H+N+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 138 CEVCGKTFGLKEYLRRHMRTHRVER 162
CEVC + F +E+L+RH R+H E+
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 689 CEVCGKTFGLKEYLRRHMRTHRVER 713
CEVC + F +E+L+RH R+H E+
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
+K + C C K FT + L H R+HT EKP
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 847 KTYICEY--CHKEFTFYNYLRRHMRVHTNEKPYKC--KDCGAAFNHNVSLKNHKNS 898
+++IC + C K + ++L+ H R HT EKP+ C K C F + L H+ +
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C+ C K F ++L +H VH+ E+P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 874 EKPYKCKDCGAAFNHNVSLKNHK 896
EKPYKC +CG AF N S H+
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQ 32
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 872 TNEKPYKCKDCGAAFNHNVSLKNHK 896
+ EKPY+CK+CG +F+ SL H+
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHE 30
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 848 TYICEYCHKEFTFYNYLRRHMRVHTNEK 875
+++CE C + F L+RH R HTNEK
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNEK 29
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 468 FVCQYCNKDFPFMKYLKRHLRVHSND 493
FVC+ C + F + LKRH R H+N+
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSHTNE 28
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEK 875
EK Y C C K FT+ + LR H + HT E+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 874 EKPYKCKDCGAAFNHNVSLKNHK 896
EKPYKC DCG +F L+ H+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQ 32
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 499 PYKCTACNAAFNTKSALNVHRK 520
PYKC+ C +F KS L +H+K
Sbjct: 12 PYKCSDCGKSFTWKSRLRIHQK 33
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNE 874
EK Y+C+ C K FT + L H RVHT E
Sbjct: 8 EKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C C K F+ L H R+H+ +KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 874 EKPYKCKDCGAAFNHNVSLKNHK 896
EKPY+C CG AF+H SL H+
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQ 32
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C C K F ++L RH +HT EKP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 560 AGEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMH 619
+GE+ + C IC A F + + H+ H E K + C C V A ++ L +H+++ H
Sbjct: 11 SGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFH-CPHCDTVIARKSDLGVHLRKQH 69
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 227 YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMK 279
Y C C +FT+ G M +HI H +++ KF C +C+ + L H++
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVA--KFHCPHCDTVIARKSDLGVHLR 66
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 872 TNEKPYKCKDCGAAFNHNVSLKNHKNS 898
T EKPY+C +CG AF N L H+ +
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRT 34
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C C K F+ + L H +HT +KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
PY+CT C AF KS L +H++T
Sbjct: 10 PYECTDCGKAFGLKSQLIIHQRT 32
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVE 161
E+P C CGK FGLK L H RTH E
Sbjct: 8 EKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVE 712
E+P C CGK FGLK L H RTH E
Sbjct: 8 EKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 30.0 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 872 TNEKPYKCKDCGAAFNHNVSLKNHKNS 898
+ EKPY+C DCG AF L H+ +
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRT 32
>pdb|3EGB|A Chain A, Structure Of Pellino2 Fha Domain At 3.3 Angstroms
Resolution.
pdb|3EGB|B Chain B, Structure Of Pellino2 Fha Domain At 3.3 Angstroms
Resolution
Length = 285
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 131 TPEERP----RCEVCGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICG---FYHKHK 183
T E +P VCG + L+E R VE + N + +L +CG +
Sbjct: 196 TEESQPGVWREISVCGDVYTLRETRSAQQRGKLVESETNVLQDGSLIDLCGATLLWRTAD 255
Query: 184 KMIYRHIKEHIEPKKQE 200
+ + ++HIE +QE
Sbjct: 256 GLFHTPTQKHIEALRQE 272
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C+ C K F+ L +H R+H+ EKP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 499 PYKCTACNAAFNTKSALNVHRK 520
P+KC C F+ +SALNVH K
Sbjct: 12 PFKCVECGKGFSRRSALNVHHK 33
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 436 YDCTFCGKGFTRKAELNIHIK 456
+ C CGKGF+R++ LN+H K
Sbjct: 13 FKCVECGKGFSRRSALNVHHK 33
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
E+ + C C K F +L +H R+HT EKP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|3TOA|A Chain A, Human Mof Crystal Structure With Active Site Lysine
Partially Acetylated
Length = 266
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 100 EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHR 159
+P + CEYC+K + + R H+ + P G + Y + ++ +
Sbjct: 28 QPKLWLCEYCLKYMKYEKSYRFHLGQCQWRQPP-------------GKEIYRKSNISVYE 74
Query: 160 VERKYNGFESAALCFICGFYHKHKKMIY 187
V+ K + LC + + H K +Y
Sbjct: 75 VDGKDHKIYCQNLCLLAKLFLDHXKTLY 102
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK + C C K + +L +H RVHT EKP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 874 EKPYKCKDCGAAFNHNVSLKNHK 896
EKP+KC +CG ++N V L H+
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQ 32
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y CE C F +LR H+ +HT P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
557- 589) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 463 QLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQ 495
Q E+ F C C K F KYL +H R+H+ V+
Sbjct: 8 QKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVK 40
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 844 QLEKTYICEYCHKEFTFYNYLRRHMRVHT 872
Q EK + C C K F+ YL +H R+HT
Sbjct: 8 QKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 872 TNEKPYKCKDCGAAFNHNVSLKNHK 896
T E P+KC +CG F+H+ L H+
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQ 32
>pdb|3TOB|A Chain A, Human Mof E350q Crystal Structure With Active Site Lysine
Partially Acetylated
Length = 270
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 100 EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHR 159
+P + CEYC+K + + R H+ + P G + Y + ++ +
Sbjct: 28 QPKLWLCEYCLKYMKYEKSYRFHLGQCQWRQPP-------------GKEIYRKSNISVYE 74
Query: 160 VERKYNGFESAALCFICGFYHKHKKMIY 187
V+ K + LC + + H K +Y
Sbjct: 75 VDGKDHKIYCQNLCLLAKLFLDHXKTLY 102
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHT 872
EK Y+C C K FTF + L H +HT
Sbjct: 8 EKPYVCSDCGKAFTFKSQLIVHQGIHT 34
Score = 30.4 bits (67), Expect = 5.5, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 872 TNEKPYKCKDCGAAFNHNVSLKNHK 896
+ EKPY C DCG AF L H+
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQ 30
Score = 29.6 bits (65), Expect = 9.0, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 817 HVCPHCGKKFTRKAELQLHIKGIH 840
+VC CGK FT K++L +H +GIH
Sbjct: 11 YVCSDCGKAFTFKSQLIVH-QGIH 33
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 874 EKPYKCKDCGAAFNHNVSLKNHK 896
EKP+ C DCG AF+ ++ L H+
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHR 32
Score = 29.6 bits (65), Expect = 7.9, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK + C C K F+ + L +H R+HT EKP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C C K F ++ L H +HT EKP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 874 EKPYKCKDCGAAFNHNVSLKNHK 896
EKPYKC +CG AF + +L H+
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQ 32
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 436 YDCTFCGKGFTRKAELNIHIK 456
++CT CGK FTRK+ L++H K
Sbjct: 13 FECTECGKAFTRKSTLSMHQK 33
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 847 KTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
K + C C K FT + L H ++HT EKP
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y C C K F + L H R+HT E P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 872 TNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKPYKC +CG AF +L H+
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQ 32
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
E +IC C K FT L H ++HT E+P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EKT+ C C F+ + LR H VH EKP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2PQ8|A Chain A, Myst Histone Acetyltransferase 1
Length = 278
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 100 EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHR 159
+P + CEYC+K + + R H+ + P G + Y + ++ H
Sbjct: 33 QPKLWLCEYCLKYMKYEKSYRFHLGQCQWRQPP-------------GKEIYRKSNISVHE 79
Query: 160 VERKYNGFESAALCFICGFYHKHKKMIY 187
V+ K + LC + + H+ + +
Sbjct: 80 VDGKDHKIYCQNLCLLAKLFLDHRTLYF 107
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 874 EKPYKCKDCGAAFNHNVSLKNHK 896
EKPYKC +CG AF+ + L H+
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHR 32
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
E+ Y C C K F + L H R+HT EKP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 30.4 bits (67), Expect = 5.2, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 872 TNEKPYKCKDCGAAFNHNVSLKNHKNS 898
+ E PY+C +CG AFN L +H+ +
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRT 32
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
PY+C C AF TKS+L HR++
Sbjct: 12 PYECIECGKAFKTKSSLICHRRS 34
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 874 EKPYKCKDCGAAFNHNVSLKNHK 896
EKPYKC +CG AF SL H+
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQ 32
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
PYKC C AF +S+L +H+ T
Sbjct: 12 PYKCNECGKAFRARSSLAIHQAT 34
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 658 EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYKC 717
E C K F++ +L+ H + H + P E P E C K F L L+RH + H Y C
Sbjct: 7 ENCGKAFKKHNQLKVH-QFSHTQQLPYECPH-EGCDKRFSLPSRLKRHEKVH---AGYPC 61
Query: 718 VCGD-----GFNFNVSLKVHMAKC 736
D G + + LK H+A+C
Sbjct: 62 KKDDSCSFVGKTWTLYLK-HVAEC 84
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 107 EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTH 158
E C K F++ +L+ H + H + P E P E C K F L L+RH + H
Sbjct: 7 ENCGKAFKKHNQLKVH-QFSHTQQLPYECPH-EGCDKRFSLPSRLKRHEKVH 56
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 822 CGKKFTRKAELQLHIKGIHLKHQLEKTYIC--EYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
CGK F + +L++H H + Y C E C K F+ + L+RH +VH Y C
Sbjct: 9 CGKAFKKHNQLKVH----QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPC 61
Query: 880 K 880
K
Sbjct: 62 K 62
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 499 PYKCTACNAAFNTKSALNVHR 519
P++C C+ +F +SALN HR
Sbjct: 12 PFRCDTCDKSFRQRSALNSHR 32
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK + C+ C K F + L H +HT EKP
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 658 EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYKC 717
E C K F++ +L+ H + H + P E P E C K F L L+RH + H Y C
Sbjct: 7 ENCGKAFKKHNQLKVH-QFSHTQQLPYECPH-EGCDKRFSLPSRLKRHEKVH---AGYPC 61
Query: 718 VCGD-----GFNFNVSLKVHMAKC 736
D G + + LK H+A+C
Sbjct: 62 KKDDSCSFVGKTWTLYLK-HVAEC 84
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 107 EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTH 158
E C K F++ +L+ H + H + P E P E C K F L L+RH + H
Sbjct: 7 ENCGKAFKKHNQLKVH-QFSHTQQLPYECPH-EGCDKRFSLPSRLKRHEKVH 56
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 822 CGKKFTRKAELQLHIKGIHLKHQLEKTYIC--EYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
CGK F + +L++H H + Y C E C K F+ + L+RH +VH Y C
Sbjct: 9 CGKAFKKHNQLKVH----QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPC 61
Query: 880 K 880
K
Sbjct: 62 K 62
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK Y CE C K + L H +VHT E+P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 8.9, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
EK + C C K F+ +YL H + H EKP
Sbjct: 8 EKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.136 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,850,577
Number of Sequences: 62578
Number of extensions: 1206363
Number of successful extensions: 5983
Number of sequences better than 100.0: 174
Number of HSP's better than 100.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3520
Number of HSP's gapped (non-prelim): 2038
length of query: 1000
length of database: 14,973,337
effective HSP length: 108
effective length of query: 892
effective length of database: 8,214,913
effective search space: 7327702396
effective search space used: 7327702396
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)