Query psy15135
Match_columns 1000
No_of_seqs 730 out of 4644
Neff 10.7
Searched_HMMs 46136
Date Fri Aug 16 21:29:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15135.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15135hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1074|consensus 100.0 1.3E-29 2.9E-34 270.7 5.5 209 686-906 605-937 (958)
2 KOG2462|consensus 99.9 5.5E-28 1.2E-32 227.4 4.7 140 684-900 128-267 (279)
3 KOG1074|consensus 99.9 1.9E-27 4E-32 254.4 5.3 277 562-877 603-936 (958)
4 KOG3623|consensus 99.9 2.1E-25 4.6E-30 233.8 7.2 81 814-898 892-972 (1007)
5 KOG2462|consensus 99.9 5.1E-25 1.1E-29 207.6 5.3 137 652-869 128-264 (279)
6 KOG3608|consensus 99.9 1.4E-23 3.1E-28 201.5 15.0 190 570-785 185-380 (467)
7 KOG3608|consensus 99.9 1.1E-23 2.4E-28 202.3 13.5 208 598-888 182-398 (467)
8 KOG3623|consensus 99.8 1.9E-20 4.2E-25 196.9 9.1 124 103-282 210-333 (1007)
9 KOG3576|consensus 99.6 4.7E-17 1E-21 144.3 -0.9 107 814-924 115-232 (267)
10 KOG3576|consensus 99.6 1.6E-16 3.5E-21 141.0 1.5 115 755-904 115-240 (267)
11 KOG1146|consensus 99.2 2.4E-11 5.2E-16 139.5 10.1 98 346-456 731-847 (1406)
12 KOG1146|consensus 99.1 4.5E-11 9.7E-16 137.3 3.5 283 15-315 438-846 (1406)
13 PHA02768 hypothetical protein; 99.1 6.2E-11 1.3E-15 83.2 2.1 45 848-894 5-49 (55)
14 PHA00733 hypothetical protein 99.1 9.1E-11 2E-15 103.1 3.3 84 815-901 39-124 (128)
15 PLN03086 PRLI-interacting fact 99.0 2.8E-10 6E-15 123.8 7.1 103 756-900 452-564 (567)
16 PLN03086 PRLI-interacting fact 98.9 2.1E-09 4.6E-14 117.0 8.2 139 81-279 409-561 (567)
17 PF13465 zf-H2C2_2: Zinc-finge 98.8 1.3E-09 2.8E-14 65.5 1.5 26 863-888 1-26 (26)
18 PHA00733 hypothetical protein 98.7 1.1E-08 2.4E-13 90.1 4.4 85 101-195 38-124 (128)
19 PHA02768 hypothetical protein; 98.7 5.6E-09 1.2E-13 73.5 1.4 44 13-61 5-48 (55)
20 KOG3993|consensus 98.7 9E-09 2E-13 103.4 2.9 30 560-589 352-381 (500)
21 KOG3993|consensus 98.5 1.8E-08 3.9E-13 101.4 -0.6 180 435-621 267-484 (500)
22 PHA00616 hypothetical protein 98.5 4.5E-08 9.7E-13 65.3 1.2 35 848-882 1-35 (44)
23 PHA00732 hypothetical protein 98.3 4E-07 8.7E-12 71.8 2.8 46 848-899 1-47 (79)
24 PF13465 zf-H2C2_2: Zinc-finge 98.2 6.9E-07 1.5E-11 53.6 1.2 26 28-56 1-26 (26)
25 PHA00616 hypothetical protein 98.1 1.4E-06 3.1E-11 58.2 2.4 31 13-43 1-31 (44)
26 PHA00732 hypothetical protein 98.1 2.4E-06 5.1E-11 67.4 2.9 49 816-873 1-49 (79)
27 PF05605 zf-Di19: Drought indu 97.9 1.4E-05 3.1E-10 58.5 4.3 52 103-159 2-53 (54)
28 PF05605 zf-Di19: Drought indu 97.8 2.6E-05 5.5E-10 57.2 4.5 52 13-68 2-53 (54)
29 PF00096 zf-C2H2: Zinc finger, 97.7 1.5E-05 3.2E-10 46.7 1.2 22 849-870 1-22 (23)
30 PF00096 zf-C2H2: Zinc finger, 97.6 4.3E-05 9.4E-10 44.7 1.7 22 136-157 1-22 (23)
31 COG5189 SFP1 Putative transcri 97.4 6.1E-05 1.3E-09 73.2 1.7 24 874-897 396-419 (423)
32 PF13912 zf-C2H2_6: C2H2-type 97.3 0.00011 2.3E-09 45.0 1.0 25 876-900 1-25 (27)
33 PF13894 zf-C2H2_4: C2H2-type 97.2 0.00016 3.5E-09 42.9 1.4 23 849-871 1-23 (24)
34 PF13894 zf-C2H2_4: C2H2-type 97.2 0.00019 4.1E-09 42.6 1.5 23 14-36 1-23 (24)
35 PF12756 zf-C2H2_2: C2H2 type 97.2 0.00013 2.8E-09 62.9 0.9 73 818-899 1-73 (100)
36 PF13912 zf-C2H2_6: C2H2-type 97.2 0.00023 5E-09 43.5 1.7 25 848-872 1-25 (27)
37 PF12756 zf-C2H2_2: C2H2 type 97.1 0.00029 6.3E-09 60.6 2.2 73 105-193 1-73 (100)
38 KOG2231|consensus 96.8 0.002 4.4E-08 72.0 6.7 22 47-69 118-139 (669)
39 COG5189 SFP1 Putative transcri 96.7 0.0005 1.1E-08 67.1 0.7 67 712-778 347-419 (423)
40 PF09237 GAGA: GAGA factor; I 96.7 0.001 2.3E-08 45.5 1.9 33 131-163 20-52 (54)
41 PF09237 GAGA: GAGA factor; I 96.7 0.0012 2.5E-08 45.3 2.0 34 843-876 19-52 (54)
42 PRK04860 hypothetical protein; 96.6 0.00086 1.9E-08 61.5 1.3 40 848-891 119-158 (160)
43 COG5236 Uncharacterized conser 96.6 0.005 1.1E-07 61.1 6.5 125 757-901 151-306 (493)
44 smart00355 ZnF_C2H2 zinc finge 96.5 0.0016 3.6E-08 39.3 1.9 23 849-871 1-23 (26)
45 KOG2231|consensus 96.5 0.031 6.7E-07 62.9 12.6 137 689-880 118-275 (669)
46 smart00355 ZnF_C2H2 zinc finge 96.1 0.0047 1E-07 37.2 2.4 23 136-158 1-23 (26)
47 KOG2785|consensus 96.0 0.014 3.1E-07 59.7 6.3 55 563-617 165-242 (390)
48 COG5236 Uncharacterized conser 95.9 0.013 2.9E-07 58.2 5.6 47 566-619 222-275 (493)
49 PF13909 zf-H2C2_5: C2H2-type 95.7 0.0071 1.5E-07 35.6 1.7 23 136-159 1-23 (24)
50 KOG2482|consensus 95.7 0.029 6.4E-07 55.9 6.8 53 565-617 280-356 (423)
51 PF12874 zf-met: Zinc-finger o 95.6 0.0059 1.3E-07 36.4 1.3 20 850-869 2-21 (25)
52 PF12874 zf-met: Zinc-finger o 95.6 0.0056 1.2E-07 36.5 1.0 22 14-35 1-22 (25)
53 KOG2785|consensus 95.5 0.024 5.2E-07 58.1 5.9 29 559-587 63-91 (390)
54 PF13909 zf-H2C2_5: C2H2-type 95.5 0.0093 2E-07 35.1 1.8 24 758-782 1-24 (24)
55 PF12171 zf-C2H2_jaz: Zinc-fin 95.2 0.012 2.5E-07 35.8 1.5 21 849-869 2-22 (27)
56 KOG2482|consensus 95.2 0.039 8.6E-07 55.1 5.8 60 225-284 143-221 (423)
57 PF12171 zf-C2H2_jaz: Zinc-fin 94.9 0.015 3.3E-07 35.3 1.5 22 877-898 2-23 (27)
58 KOG4173|consensus 94.4 0.04 8.7E-07 50.6 3.5 92 9-127 75-170 (253)
59 PRK04860 hypothetical protein; 92.9 0.035 7.5E-07 51.2 0.4 39 13-58 119-157 (160)
60 KOG4173|consensus 92.7 0.099 2.1E-06 48.2 3.0 91 562-679 77-171 (253)
61 PF13913 zf-C2HC_2: zinc-finge 91.6 0.18 4E-06 29.8 2.3 19 137-156 4-22 (25)
62 COG5048 FOG: Zn-finger [Genera 91.3 0.032 6.8E-07 64.0 -2.3 69 653-724 288-364 (467)
63 PF13913 zf-C2HC_2: zinc-finge 90.1 0.19 4.2E-06 29.7 1.5 19 817-836 3-21 (25)
64 smart00451 ZnF_U1 U1-like zinc 89.9 0.15 3.1E-06 33.4 0.9 23 876-898 3-25 (35)
65 COG5048 FOG: Zn-finger [Genera 89.7 0.35 7.6E-06 55.3 4.6 58 848-905 289-352 (467)
66 KOG2893|consensus 89.1 0.14 3.1E-06 48.2 0.5 41 657-705 13-53 (341)
67 KOG2893|consensus 89.1 0.13 2.9E-06 48.4 0.3 45 106-158 13-58 (341)
68 smart00451 ZnF_U1 U1-like zinc 89.0 0.26 5.6E-06 32.2 1.6 22 848-869 3-24 (35)
69 PF09538 FYDLN_acid: Protein o 88.3 0.22 4.8E-06 42.3 1.1 34 76-116 6-39 (108)
70 TIGR00622 ssl1 transcription f 87.7 0.64 1.4E-05 39.3 3.4 80 816-899 15-104 (112)
71 COG4049 Uncharacterized protei 86.5 0.42 9.2E-06 33.6 1.5 28 10-37 14-41 (65)
72 cd00350 rubredoxin_like Rubred 86.3 0.36 7.8E-06 31.0 1.0 10 817-826 2-11 (33)
73 COG4049 Uncharacterized protei 79.9 1.2 2.5E-05 31.5 1.5 31 559-589 12-42 (65)
74 PF10571 UPF0547: Uncharacteri 78.9 1.1 2.5E-05 26.7 1.1 11 817-827 15-25 (26)
75 TIGR02300 FYDLN_acid conserved 78.0 1.1 2.3E-05 38.6 1.1 34 77-117 7-40 (129)
76 TIGR02098 MJ0042_CXXC MJ0042 f 77.5 1.4 3.1E-05 29.4 1.4 34 817-859 3-36 (38)
77 PF12013 DUF3505: Protein of u 77.5 3.6 7.7E-05 35.6 4.3 25 687-711 81-109 (109)
78 PF09538 FYDLN_acid: Protein o 76.1 1.9 4.2E-05 36.7 2.1 15 875-889 25-39 (108)
79 cd00729 rubredoxin_SM Rubredox 75.6 1.4 3E-05 28.5 0.9 9 817-825 3-11 (34)
80 COG2888 Predicted Zn-ribbon RN 75.0 1.8 3.8E-05 31.4 1.3 12 817-828 28-39 (61)
81 PF12013 DUF3505: Protein of u 74.9 2 4.4E-05 37.2 2.0 26 564-589 80-109 (109)
82 PF13719 zinc_ribbon_5: zinc-r 73.4 2.2 4.8E-05 28.2 1.4 34 817-859 3-36 (37)
83 PF13717 zinc_ribbon_4: zinc-r 72.2 2.7 5.9E-05 27.6 1.6 33 817-858 3-35 (36)
84 PF09986 DUF2225: Uncharacteri 71.1 0.7 1.5E-05 45.6 -1.9 25 11-35 3-27 (214)
85 PF09986 DUF2225: Uncharacteri 66.7 1.9 4.1E-05 42.6 0.1 23 101-123 3-25 (214)
86 TIGR00622 ssl1 transcription f 66.6 6.9 0.00015 33.3 3.3 90 631-734 2-102 (112)
87 PRK14890 putative Zn-ribbon RN 64.3 4.6 0.0001 29.5 1.6 9 817-825 26-34 (59)
88 TIGR02300 FYDLN_acid conserved 63.9 5.3 0.00012 34.5 2.2 15 875-889 25-39 (129)
89 PF15269 zf-C2H2_7: Zinc-finge 60.9 6.5 0.00014 26.4 1.7 27 39-66 16-42 (54)
90 PF02892 zf-BED: BED zinc fing 60.1 3 6.6E-05 29.0 0.1 22 847-868 15-40 (45)
91 smart00531 TFIIE Transcription 59.3 5.2 0.00011 36.8 1.5 34 817-858 100-133 (147)
92 COG1592 Rubrerythrin [Energy p 58.8 5.5 0.00012 36.9 1.5 11 873-883 146-156 (166)
93 smart00659 RPOLCX RNA polymera 58.1 5.8 0.00013 27.4 1.2 11 849-859 3-13 (44)
94 PF15269 zf-C2H2_7: Zinc-finge 57.8 7.2 0.00016 26.2 1.5 23 135-157 20-42 (54)
95 smart00614 ZnF_BED BED zinc fi 57.1 5 0.00011 28.8 0.8 10 850-859 20-29 (50)
96 PRK00398 rpoP DNA-directed RNA 56.2 7.2 0.00016 27.4 1.4 11 817-827 4-14 (46)
97 COG1198 PriA Primosomal protei 56.1 9.4 0.0002 45.0 3.2 40 817-885 445-484 (730)
98 PHA00626 hypothetical protein 56.1 7.1 0.00015 28.0 1.3 10 849-858 24-33 (59)
99 smart00531 TFIIE Transcription 53.0 11 0.00024 34.6 2.6 39 844-887 95-134 (147)
100 KOG4124|consensus 52.4 4.8 0.0001 41.0 0.1 25 874-898 396-420 (442)
101 KOG2186|consensus 52.1 7.8 0.00017 37.8 1.4 19 655-674 30-48 (276)
102 KOG1280|consensus 50.7 56 0.0012 33.9 7.1 38 816-855 79-116 (381)
103 smart00734 ZnF_Rad18 Rad18-lik 50.4 14 0.00029 22.2 1.7 19 137-156 3-21 (26)
104 COG1997 RPL43A Ribosomal prote 50.2 9.7 0.00021 30.4 1.4 15 846-860 51-65 (89)
105 COG1592 Rubrerythrin [Energy p 49.8 10 0.00022 35.2 1.7 25 815-856 133-157 (166)
106 KOG2186|consensus 49.3 8.4 0.00018 37.6 1.1 46 849-897 4-49 (276)
107 KOG4167|consensus 48.8 6.8 0.00015 44.4 0.5 26 12-37 791-816 (907)
108 COG4530 Uncharacterized protei 48.3 8.5 0.00019 31.8 0.9 31 77-114 7-37 (129)
109 TIGR00373 conserved hypothetic 46.9 10 0.00022 35.4 1.3 16 817-832 110-125 (158)
110 PF06524 NOA36: NOA36 protein; 46.7 15 0.00033 35.9 2.4 43 221-266 137-179 (314)
111 PF05443 ROS_MUCR: ROS/MUCR tr 46.2 10 0.00022 33.7 1.1 27 11-40 70-96 (132)
112 PRK06266 transcription initiat 44.9 10 0.00023 36.0 1.1 14 817-830 118-131 (178)
113 PF03604 DNA_RNApol_7kD: DNA d 44.8 12 0.00026 23.8 1.0 9 876-884 17-25 (32)
114 COG1996 RPC10 DNA-directed RNA 44.4 11 0.00024 26.6 0.8 10 849-858 7-16 (49)
115 KOG2071|consensus 43.8 16 0.00034 41.0 2.3 25 813-837 415-439 (579)
116 PRK00464 nrdR transcriptional 43.5 7.3 0.00016 35.8 -0.2 13 259-271 29-41 (154)
117 smart00834 CxxC_CXXC_SSSS Puta 43.3 6.8 0.00015 26.5 -0.3 12 817-828 6-17 (41)
118 PF07754 DUF1610: Domain of un 42.8 11 0.00023 22.1 0.5 9 816-824 16-24 (24)
119 TIGR02605 CxxC_CxxC_SSSS putat 42.6 7.2 0.00016 28.2 -0.3 10 817-826 6-15 (52)
120 KOG2807|consensus 42.4 26 0.00056 35.8 3.3 36 77-122 274-309 (378)
121 PRK09678 DNA-binding transcrip 41.2 8.3 0.00018 30.0 -0.2 41 849-891 2-44 (72)
122 COG4530 Uncharacterized protei 38.8 16 0.00034 30.4 1.0 27 817-858 10-36 (129)
123 PF09723 Zn-ribbon_8: Zinc rib 38.5 15 0.00033 25.1 0.8 13 227-239 6-18 (42)
124 PRK00464 nrdR transcriptional 37.7 20 0.00044 33.0 1.8 19 226-244 28-46 (154)
125 COG5188 PRP9 Splicing factor 3 37.1 55 0.0012 33.8 4.7 26 462-487 369-395 (470)
126 PRK09678 DNA-binding transcrip 36.5 11 0.00025 29.3 -0.1 39 817-861 2-42 (72)
127 KOG1280|consensus 36.5 30 0.00065 35.7 2.8 62 43-123 78-139 (381)
128 KOG4167|consensus 35.9 11 0.00024 42.8 -0.3 27 134-160 791-817 (907)
129 PRK06266 transcription initiat 35.8 28 0.00062 33.1 2.5 34 845-887 114-147 (178)
130 PF06524 NOA36: NOA36 protein; 35.8 33 0.00073 33.7 2.9 89 430-522 137-232 (314)
131 KOG4377|consensus 34.4 38 0.00082 35.9 3.2 24 877-900 402-427 (480)
132 PF00301 Rubredoxin: Rubredoxi 34.3 24 0.00053 24.8 1.3 12 347-358 32-43 (47)
133 COG5151 SSL1 RNA polymerase II 33.4 74 0.0016 32.2 4.8 28 560-587 384-411 (421)
134 cd00730 rubredoxin Rubredoxin; 31.7 24 0.00052 25.3 0.9 10 348-357 33-42 (50)
135 KOG2071|consensus 31.7 45 0.00098 37.6 3.5 28 465-492 416-443 (579)
136 PRK03564 formate dehydrogenase 31.6 21 0.00045 37.2 0.9 11 816-826 212-222 (309)
137 PRK14873 primosome assembly pr 29.3 38 0.00082 40.1 2.6 39 817-885 393-431 (665)
138 PF05191 ADK_lid: Adenylate ki 29.3 33 0.00071 22.6 1.2 11 817-827 2-12 (36)
139 PF04959 ARS2: Arsenite-resist 29.1 25 0.00055 34.4 0.9 25 654-678 77-101 (214)
140 PF14353 CpXC: CpXC protein 28.5 15 0.00033 32.8 -0.6 20 103-122 38-57 (128)
141 KOG2593|consensus 28.5 47 0.001 35.8 2.8 35 434-475 127-161 (436)
142 PF12907 zf-met2: Zinc-binding 27.4 40 0.00086 22.8 1.3 25 655-679 2-29 (40)
143 TIGR00373 conserved hypothetic 27.3 21 0.00045 33.3 0.1 18 12-29 108-125 (158)
144 COG4957 Predicted transcriptio 27.2 36 0.00079 29.7 1.4 25 14-41 77-101 (148)
145 TIGR00595 priA primosomal prot 27.0 42 0.00091 38.5 2.4 40 817-885 223-262 (505)
146 PF05443 ROS_MUCR: ROS/MUCR tr 26.7 39 0.00084 30.2 1.6 26 686-714 72-97 (132)
147 PTZ00255 60S ribosomal protein 26.3 38 0.00082 27.7 1.3 14 847-860 53-66 (90)
148 COG0068 HypF Hydrogenase matur 26.3 23 0.0005 40.8 0.1 60 818-888 125-185 (750)
149 KOG4124|consensus 26.2 18 0.00038 37.2 -0.7 56 814-869 347-419 (442)
150 smart00440 ZnF_C2C2 C2C2 Zinc 26.1 49 0.0011 22.4 1.6 13 225-237 27-39 (40)
151 PF01096 TFIIS_C: Transcriptio 25.7 39 0.00084 22.7 1.1 12 225-236 27-38 (39)
152 TIGR00280 L37a ribosomal prote 25.5 36 0.00077 27.9 1.0 14 847-860 52-65 (91)
153 KOG2907|consensus 25.5 45 0.00097 28.3 1.6 38 793-830 76-116 (116)
154 PF01780 Ribosomal_L37ae: Ribo 25.0 28 0.00061 28.4 0.4 12 848-859 53-64 (90)
155 PF01363 FYVE: FYVE zinc finge 24.5 37 0.00081 26.3 1.0 9 850-858 11-19 (69)
156 PF14353 CpXC: CpXC protein 24.4 6.6 0.00014 35.2 -3.8 25 292-316 35-59 (128)
157 smart00154 ZnF_AN1 AN1-like Zi 23.1 39 0.00084 22.7 0.7 13 876-888 12-24 (39)
158 PF04959 ARS2: Arsenite-resist 22.7 43 0.00093 32.8 1.2 31 682-712 73-103 (214)
159 KOG3408|consensus 22.5 48 0.001 28.4 1.3 27 131-157 53-79 (129)
160 PRK03824 hypA hydrogenase nick 22.5 39 0.00085 30.5 0.8 13 817-829 71-83 (135)
161 COG2331 Uncharacterized protei 22.4 36 0.00079 26.3 0.5 10 104-113 13-22 (82)
162 TIGR01562 FdhE formate dehydro 22.3 43 0.00092 35.0 1.2 10 817-826 211-220 (305)
163 PF13878 zf-C2H2_3: zinc-finge 22.2 1.1E+02 0.0024 20.8 2.7 23 43-65 12-36 (41)
164 cd00065 FYVE FYVE domain; Zinc 22.1 56 0.0012 24.0 1.5 12 876-887 18-29 (57)
165 COG3677 Transposase and inacti 21.8 38 0.00081 30.3 0.6 13 817-829 54-66 (129)
166 PRK03976 rpl37ae 50S ribosomal 21.5 45 0.00097 27.3 0.9 14 847-860 53-66 (90)
167 KOG3408|consensus 21.0 98 0.0021 26.7 2.7 28 559-586 52-79 (129)
168 COG4957 Predicted transcriptio 21.0 47 0.001 29.1 0.9 25 687-714 77-101 (148)
169 TIGR01206 lysW lysine biosynth 20.6 30 0.00064 25.3 -0.3 11 104-114 3-13 (54)
170 COG4896 Uncharacterized protei 20.5 49 0.0011 24.3 0.8 41 14-57 3-44 (68)
171 PF12760 Zn_Tnp_IS1595: Transp 20.3 30 0.00065 24.2 -0.3 9 817-825 19-27 (46)
172 PRK00432 30S ribosomal protein 20.2 40 0.00086 24.2 0.3 9 136-144 38-46 (50)
173 PRK05580 primosome assembly pr 20.0 66 0.0014 38.5 2.3 40 817-885 391-430 (679)
No 1
>KOG1074|consensus
Probab=99.95 E-value=1.3e-29 Score=270.75 Aligned_cols=209 Identities=23% Similarity=0.400 Sum_probs=158.9
Q ss_pred cccccccccccccHHHHHHHHhHhcCccceee-ccCCCccchhhHHHHHHHhhhhhhhhhhcCCCCCCCCCCCcCCc---
Q psy15135 686 RPRCEVCGKTFGLKEYLRRHMRTHRVERKYKC-VCGDGFNFNVSLKVHMAKCAFYLKSLEKEGESDHGGYETSSLCY--- 761 (1000)
Q Consensus 686 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C-~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~--- 761 (1000)
+-+|-+|-++.+.++.|+.|.|+|+||+||+| +||++|.++.+|+.||..|-. -......+.|+
T Consensus 605 PNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka------------~p~~R~q~ScP~~~ 672 (958)
T KOG1074|consen 605 PNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKA------------KPPARVQFSCPSTF 672 (958)
T ss_pred ccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhccccccc------------CccccccccCCchh
Confidence 56899999999999999999999999999999 899999999999999987421 01113568899
Q ss_pred ccCcccCChhHHHhHHHHhhCCcch-------hccccccccchhhhhhh---HHhhhccc----------------CCCC
Q psy15135 762 HCGYYSKNRSTLKNHVRVEHGENQA-------KRKEKKICDICSAEVVH---LAIHKKHS----------------HSGQ 815 (1000)
Q Consensus 762 ~C~~~f~~~~~l~~H~~~h~~~~~~-------~~~~~~~C~~c~~~~~~---l~~h~~~~----------------~~~~ 815 (1000)
+|-+.|...-.|..|+++|.+.... .......|..|.+.+++ +..++..+ ..+.
T Consensus 673 ic~~kftn~V~lpQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~~ 752 (958)
T KOG1074|consen 673 ICQKKFTNAVTLPQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEEL 752 (958)
T ss_pred hhcccccccccccceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcccCCccccccccccccc
Confidence 9999999999999999999854221 22344567888775533 22222211 1111
Q ss_pred ----cccCCCCCccccchhhHHHHhhcc--c-----------------cccCC---------------------------
Q psy15135 816 ----YHVCPHCGKKFTRKAELQLHIKGI--H-----------------LKHQL--------------------------- 845 (1000)
Q Consensus 816 ----~~~C~~C~~~f~~~~~L~~H~~~~--h-----------------~~h~~--------------------------- 845 (1000)
+..+..|+..+.....+..+--.. + ...+.
T Consensus 753 ~~tp~~~e~~~~~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~ 832 (958)
T KOG1074|consen 753 DVTPPPPENSCGRELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQ 832 (958)
T ss_pred ccCCCccccccccccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhcc
Confidence 467888998888777765543111 0 00000
Q ss_pred ------------------------------------------C--CccccCccccccCChHHHHhhhhhccCCCcccCCc
Q psy15135 846 ------------------------------------------E--KTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKD 881 (1000)
Q Consensus 846 ------------------------------------------~--k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~ 881 (1000)
. -...|.+||+.|...++|..|||+|+|+|||.|.+
T Consensus 833 ~~~~l~eg~~t~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~f 912 (958)
T KOG1074|consen 833 ETSMLNEGLATKTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHF 912 (958)
T ss_pred cccccccccccccccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhhcCCCCCCccchh
Confidence 0 11679999999999999999999999999999999
Q ss_pred CcccccCchhhhhccccCCCCCCCC
Q psy15135 882 CGAAFNHNVSLKNHKNSSCPKRDMT 906 (1000)
Q Consensus 882 C~~~f~~~~~L~~H~~~~~~~~~~~ 906 (1000)
|+++|..+.+|+.||.+|....+..
T Consensus 913 C~~aFttrgnLKvHMgtH~w~q~~s 937 (958)
T KOG1074|consen 913 CEEAFTTRGNLKVHMGTHMWVQPPS 937 (958)
T ss_pred hhhhhhhhhhhhhhhccccccCCCc
Confidence 9999999999999999997655444
No 2
>KOG2462|consensus
Probab=99.94 E-value=5.5e-28 Score=227.43 Aligned_cols=140 Identities=35% Similarity=0.606 Sum_probs=126.7
Q ss_pred CCcccccccccccccHHHHHHHHhHhcCccceeeccCCCccchhhHHHHHHHhhhhhhhhhhcCCCCCCCCCCCcCCccc
Q psy15135 684 EERPRCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCGDGFNFNVSLKVHMAKCAFYLKSLEKEGESDHGGYETSSLCYHC 763 (1000)
Q Consensus 684 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C 763 (1000)
...|+|+.||+.+.+.++|.+|.++|..-. ..+.+.|++|
T Consensus 128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~----------------------------------------s~ka~~C~~C 167 (279)
T KOG2462|consen 128 HPRYKCPECGKSYSTSSNLSRHKQTHRSLD----------------------------------------SKKAFSCKYC 167 (279)
T ss_pred CCceeccccccccccccccchhhccccccc----------------------------------------ccccccCCCC
Confidence 345889999999999999999999885321 1566889999
Q ss_pred CcccCChhHHHhHHHHhhCCcchhccccccccchhhhhhhHHhhhcccCCCCcccCCCCCccccchhhHHHHhhcccccc
Q psy15135 764 GYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKH 843 (1000)
Q Consensus 764 ~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~C~~c~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~h 843 (1000)
|+.|.+...|+.|+|+|+- +++|.+|||.|.+..-|+-|+ +.|
T Consensus 168 ~K~YvSmpALkMHirTH~l---------------------------------~c~C~iCGKaFSRPWLLQGHi----RTH 210 (279)
T KOG2462|consen 168 GKVYVSMPALKMHIRTHTL---------------------------------PCECGICGKAFSRPWLLQGHI----RTH 210 (279)
T ss_pred CceeeehHHHhhHhhccCC---------------------------------CcccccccccccchHHhhccc----ccc
Confidence 9999999999999999973 389999999999999999999 589
Q ss_pred CCCCccccCccccccCChHHHHhhhhhccCCCcccCCcCcccccCchhhhhccccCC
Q psy15135 844 QLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNSSC 900 (1000)
Q Consensus 844 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~C~~~f~~~~~L~~H~~~~~ 900 (1000)
||||||.|+.|+|+|.++++|+.||++|++.|+|+|..|+|+|..++.|.+|..+-+
T Consensus 211 TGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES~C 267 (279)
T KOG2462|consen 211 TGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSESAC 267 (279)
T ss_pred cCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhhcc
Confidence 999999999999999999999999999999999999999999999999999987643
No 3
>KOG1074|consensus
Probab=99.94 E-value=1.9e-27 Score=254.45 Aligned_cols=277 Identities=25% Similarity=0.421 Sum_probs=174.5
Q ss_pred CCcccccchhhhccChHHHHHHHHhhcCCCCCCccccccccccccChHHHHHHHHhhcCCCCCccccccccccchhhhcc
Q psy15135 562 EEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVV 641 (1000)
Q Consensus 562 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~C~~c~~~~~ 641 (1000)
..+.+|-+|.++..-.+.|+.|+|+|+|++|| +|.+||+.|.++.+|+.|+- .|.. .+..
T Consensus 603 TdPNqCiiC~rVlSC~saLqmHyrtHtGERPF---kCKiCgRAFtTkGNLkaH~~-vHka--~p~~-------------- 662 (958)
T KOG1074|consen 603 TDPNQCIICLRVLSCPSALQMHYRTHTGERPF---KCKICGRAFTTKGNLKAHMS-VHKA--KPPA-------------- 662 (958)
T ss_pred CCccceeeeeecccchhhhhhhhhcccCcCcc---ccccccchhccccchhhccc-cccc--Cccc--------------
Confidence 35689999999999999999999999999999 69999999999999999997 5542 1211
Q ss_pred chhhhhccCCCCccccc---cccccccChhHHHHHHHhhccCCC---C-------CCcccccccccccccHHHHHHHHhH
Q psy15135 642 NLAEHKLCHEPPRFTCE---YCVKPFRRTQELRNHVKAVHLTET---P-------EERPRCEVCGKTFGLKEYLRRHMRT 708 (1000)
Q Consensus 642 ~l~~h~~~h~~~~~~C~---~C~~~f~~~~~L~~H~~~~H~~~~---~-------~~~~~C~~C~k~f~~~~~L~~H~~~ 708 (1000)
..+|.|+ +|-+.|.+...|..|++ .|.... + ...-+|..|.+.|.....+..++..
T Consensus 663 ----------R~q~ScP~~~ic~~kftn~V~lpQhIr-iH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se 731 (958)
T KOG1074|consen 663 ----------RVQFSCPSTFICQKKFTNAVTLPQHIR-IHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISE 731 (958)
T ss_pred ----------cccccCCchhhhcccccccccccceEE-eecCCCCCCCcccccccchhcccchhhhcccccccchhhhhc
Confidence 2348898 99999999999999988 564211 1 1124699999999888888888776
Q ss_pred hc----------------Ccc----ceee-ccCCCccchhhHHHHHHHhh--hhhhhh------hhcCCCCCCCCCCCc-
Q psy15135 709 HR----------------VER----KYKC-VCGDGFNFNVSLKVHMAKCA--FYLKSL------EKEGESDHGGYETSS- 758 (1000)
Q Consensus 709 H~----------------~~k----~~~C-~C~~~f~~~~~l~~H~~~~~--~~~~~~------~~~~~~~~~~~~~~~- 758 (1000)
|. ++. +..+ .|+..+.....+..+-.... ...+.. ....+.+.+. +++.
T Consensus 732 ~~~~~s~~~~~~~~~t~t~~~~~tp~~~e~~~~~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~-~k~~~ 810 (958)
T KOG1074|consen 732 QPSPESEPDEQMDERTETEELDVTPPPPENSCGRELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTS-EKPTQ 810 (958)
T ss_pred cCCcccCCcccccccccccccccCCCccccccccccCcccccccccchhhhhcChhhhcCccccchhhhhcccC-CCCcc
Confidence 62 222 4455 68888877766665543321 000000 0111222333 3344
Q ss_pred CCcccCcccCChh----HHHhHHHHhhCCcchhccccccccchhhhhhhHHhh----------hcccCCCCcccCCCCCc
Q psy15135 759 LCYHCGYYSKNRS----TLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIH----------KKHSHSGQYHVCPHCGK 824 (1000)
Q Consensus 759 ~C~~C~~~f~~~~----~l~~H~~~h~~~~~~~~~~~~~C~~c~~~~~~l~~h----------~~~~~~~~~~~C~~C~~ 824 (1000)
.+..++-.-...- .|+.-...--++....... -.-..-.+ ..+..- -+..-......|.+||+
T Consensus 811 ~~~~~~~~~~~~v~~~pvl~~~~~~~l~eg~~t~~n-~~t~~~~~--~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk 887 (958)
T KOG1074|consen 811 ASSFPGEILAPSVNMDPVLWNQETSMLNEGLATKTN-EITPEGPA--DSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGK 887 (958)
T ss_pred cccCCCcCCccccccCchhhcccccccccccccccc-cccCCCcc--hhhhhhccccccCCCCCCCCcccchhhhccchh
Confidence 4444443222111 1111100000000000000 00000000 000000 00000112378999999
Q ss_pred cccchhhHHHHhhccccccCCCCccccCccccccCChHHHHhhhhhccCCCcc
Q psy15135 825 KFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPY 877 (1000)
Q Consensus 825 ~f~~~~~L~~H~~~~h~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~ 877 (1000)
.|...++|+.|+ ++|+++|||.|.+|++.|..+.+|+.||.+|....|+
T Consensus 888 ~FsSSsALqiH~----rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~w~q~~ 936 (958)
T KOG1074|consen 888 QFSSSAALEIHM----RTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHMWVQPP 936 (958)
T ss_pred cccchHHHHHhh----hcCCCCCCccchhhhhhhhhhhhhhhhhccccccCCC
Confidence 999999999999 5899999999999999999999999999999886654
No 4
>KOG3623|consensus
Probab=99.91 E-value=2.1e-25 Score=233.79 Aligned_cols=81 Identities=32% Similarity=0.689 Sum_probs=77.6
Q ss_pred CCcccCCCCCccccchhhHHHHhhccccccCCCCccccCccccccCChHHHHhhhhhccCCCcccCCcCcccccCchhhh
Q psy15135 814 GQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLK 893 (1000)
Q Consensus 814 ~~~~~C~~C~~~f~~~~~L~~H~~~~h~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~C~~~f~~~~~L~ 893 (1000)
+..|.|+.|+|+|...+.|.+|. ..|+|.|||+|.+|.|+|..+-.|..|+|.|+|||||+|+-|+|+|..+++.-
T Consensus 892 ~gmyaCDqCDK~FqKqSSLaRHK----YEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYS 967 (1007)
T KOG3623|consen 892 DGMYACDQCDKAFQKQSSLARHK----YEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYS 967 (1007)
T ss_pred cccchHHHHHHHHHhhHHHHHhh----hhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchH
Confidence 34599999999999999999998 79999999999999999999999999999999999999999999999999999
Q ss_pred hcccc
Q psy15135 894 NHKNS 898 (1000)
Q Consensus 894 ~H~~~ 898 (1000)
.||.-
T Consensus 968 QHMNH 972 (1007)
T KOG3623|consen 968 QHMNH 972 (1007)
T ss_pred hhhcc
Confidence 99963
No 5
>KOG2462|consensus
Probab=99.91 E-value=5.1e-25 Score=207.55 Aligned_cols=137 Identities=31% Similarity=0.648 Sum_probs=117.1
Q ss_pred CCccccccccccccChhHHHHHHHhhccCCCCCCcccccccccccccHHHHHHHHhHhcCccceeeccCCCccchhhHHH
Q psy15135 652 PPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCGDGFNFNVSLKV 731 (1000)
Q Consensus 652 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~C~~~f~~~~~l~~ 731 (1000)
..+|+|+.|++.+.+.+.|.+|.+ .|......+.+.|++|||.+.+...|+.|+|+|+
T Consensus 128 ~~r~~c~eCgk~ysT~snLsrHkQ-~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--------------------- 185 (279)
T KOG2462|consen 128 HPRYKCPECGKSYSTSSNLSRHKQ-THRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--------------------- 185 (279)
T ss_pred CCceeccccccccccccccchhhc-ccccccccccccCCCCCceeeehHHHhhHhhccC---------------------
Confidence 446999999999999999999998 6766666788999999999999999999999986
Q ss_pred HHHHhhhhhhhhhhcCCCCCCCCCCCcCCcccCcccCChhHHHhHHHHhhCCcchhccccccccchhhhhhhHHhhhccc
Q psy15135 732 HMAKCAFYLKSLEKEGESDHGGYETSSLCYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHS 811 (1000)
Q Consensus 732 H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~C~~c~~~~~~l~~h~~~~ 811 (1000)
-+.+|.+|||.|.....|+-|+|+|+||+|
T Consensus 186 ------------------------l~c~C~iCGKaFSRPWLLQGHiRTHTGEKP-------------------------- 215 (279)
T KOG2462|consen 186 ------------------------LPCECGICGKAFSRPWLLQGHIRTHTGEKP-------------------------- 215 (279)
T ss_pred ------------------------CCcccccccccccchHHhhcccccccCCCC--------------------------
Confidence 234677888888888888888888888876
Q ss_pred CCCCcccCCCCCccccchhhHHHHhhccccccCCCCccccCccccccCChHHHHhhhh
Q psy15135 812 HSGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMR 869 (1000)
Q Consensus 812 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~h~~~k~~~C~~C~k~f~~~~~L~~H~~ 869 (1000)
|.|++|+|.|..+++|+.|| .+|.+.|+|+|..|+|+|..++.|..|..
T Consensus 216 -----F~C~hC~kAFADRSNLRAHm----QTHS~~K~~qC~~C~KsFsl~SyLnKH~E 264 (279)
T KOG2462|consen 216 -----FSCPHCGKAFADRSNLRAHM----QTHSDVKKHQCPRCGKSFALKSYLNKHSE 264 (279)
T ss_pred -----ccCCcccchhcchHHHHHHH----HhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence 88888888888888888888 47888888888888888888888888864
No 6
>KOG3608|consensus
Probab=99.91 E-value=1.4e-23 Score=201.52 Aligned_cols=190 Identities=22% Similarity=0.443 Sum_probs=134.0
Q ss_pred hhhhccChHHHHHHHHhhcCCCCCCccccccccccccChHHHHHHHHhhcCCCCCccccccccccchhhhcc---chhhh
Q psy15135 570 CQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVV---NLAEH 646 (1000)
Q Consensus 570 C~~~f~~~~~l~~H~~~h~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~C~~c~~~~~---~l~~h 646 (1000)
|-+.|.++..|+.|+++|++++.. -|+.||..|.++..|-.|++... ......|.|..|.++|. -|..|
T Consensus 185 Ct~~~~~k~~LreH~r~Hs~eKvv---ACp~Cg~~F~~~tkl~DH~rRqt-----~l~~n~fqC~~C~KrFaTeklL~~H 256 (467)
T KOG3608|consen 185 CTKHMGNKYRLREHIRTHSNEKVV---ACPHCGELFRTKTKLFDHLRRQT-----ELNTNSFQCAQCFKRFATEKLLKSH 256 (467)
T ss_pred hhhhhccHHHHHHHHHhcCCCeEE---ecchHHHHhccccHHHHHHHhhh-----hhcCCchHHHHHHHHHhHHHHHHHH
Confidence 444444444444444444444333 34444444444444444444221 11122344444444442 23334
Q ss_pred hccCCCCccccccccccccChhHHHHHHHhhccCCCCCCcccccccccccccHHHHHHHHhHhcCccceee---ccCCCc
Q psy15135 647 KLCHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYKC---VCGDGF 723 (1000)
Q Consensus 647 ~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C---~C~~~f 723 (1000)
+..|- .-|+|+.|+.+....++|.+|++..| ...+||+|+.|++.|.+.++|.+|..+|+ +-.|.| .|..+|
T Consensus 257 v~rHv-n~ykCplCdmtc~~~ssL~~H~r~rH---s~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~ 331 (467)
T KOG3608|consen 257 VVRHV-NCYKCPLCDMTCSSASSLTTHIRYRH---SKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSV 331 (467)
T ss_pred HHHhh-hcccccccccCCCChHHHHHHHHhhh---ccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHH
Confidence 43332 13999999999999999999999888 66899999999999999999999999998 778999 499999
Q ss_pred cchhhHHHHHHHhhhhhhhhhhcCCCCCCCCCCCcCCcccCcccCChhHHHhHHHHhhCCcc
Q psy15135 724 NFNVSLKVHMAKCAFYLKSLEKEGESDHGGYETSSLCYHCGYYSKNRSTLKNHVRVEHGENQ 785 (1000)
Q Consensus 724 ~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 785 (1000)
++...|++|++.++ .+..+.+|.|-.|++.|++..+|..|++.-|+-+.
T Consensus 332 r~~~q~~~H~~evh-------------Eg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~ 380 (467)
T KOG3608|consen 332 RTYTQMRRHFLEVH-------------EGNNPILYACHCCDRFFTSGKSLSAHLMKKHGFRL 380 (467)
T ss_pred HHHHHHHHHHHHhc-------------cCCCCCceeeecchhhhccchhHHHHHHHhhcccC
Confidence 99999999998742 12336789999999999999999999988887654
No 7
>KOG3608|consensus
Probab=99.90 E-value=1.1e-23 Score=202.27 Aligned_cols=208 Identities=25% Similarity=0.438 Sum_probs=174.0
Q ss_pred cccccccccChHHHHHHHHhhcCCCCCccccccccccchhhhccchhhhhccCCCCccccccccccccChhHHHHHHHhh
Q psy15135 598 CFVCAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVVNLAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAV 677 (1000)
Q Consensus 598 C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~C~~c~~~~~~l~~h~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~ 677 (1000)
...|.+.|.+++.|+.|++ .|.+ ++...|+.||..|.++..|..|+++.
T Consensus 182 W~~Ct~~~~~k~~LreH~r-~Hs~------------------------------eKvvACp~Cg~~F~~~tkl~DH~rRq 230 (467)
T KOG3608|consen 182 WAMCTKHMGNKYRLREHIR-THSN------------------------------EKVVACPHCGELFRTKTKLFDHLRRQ 230 (467)
T ss_pred chhhhhhhccHHHHHHHHH-hcCC------------------------------CeEEecchHHHHhccccHHHHHHHhh
Confidence 4569999999999999999 5654 44588999999999999999999853
Q ss_pred ccCCCCCCcccccccccccccHHHHHHHHhHhcCccceee-ccCCCccchhhHHHHHHHhhhhhhhhhhcCCCCCCCCCC
Q psy15135 678 HLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYKC-VCGDGFNFNVSLKVHMAKCAFYLKSLEKEGESDHGGYET 756 (1000)
Q Consensus 678 H~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C-~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~ 756 (1000)
- .....+|.|..|.|.|.++..|+.|++.|-. -|+| .|+.+....++|..|++.- |.. .+
T Consensus 231 t--~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn--~ykCplCdmtc~~~ssL~~H~r~r--------------Hs~-dk 291 (467)
T KOG3608|consen 231 T--ELNTNSFQCAQCFKRFATEKLLKSHVVRHVN--CYKCPLCDMTCSSASSLTTHIRYR--------------HSK-DK 291 (467)
T ss_pred h--hhcCCchHHHHHHHHHhHHHHHHHHHHHhhh--cccccccccCCCChHHHHHHHHhh--------------hcc-CC
Confidence 2 3445689999999999999999999999964 5999 7999999999999999862 444 89
Q ss_pred CcCCcccCcccCChhHHHhHHHHhhCCcchhccccccccchhhhhhhHHhhhcccCCCCcccCCC--CCccccchhhHHH
Q psy15135 757 SSLCYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQYHVCPH--CGKKFTRKAELQL 834 (1000)
Q Consensus 757 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~C~~c~~~~~~l~~h~~~~~~~~~~~C~~--C~~~f~~~~~L~~ 834 (1000)
||+|+.|++.|.+.++|..|+.+|. +. .|+|.. |..+|.+...|++
T Consensus 292 pfKCd~Cd~~c~~esdL~kH~~~HS-~~-------------------------------~y~C~h~~C~~s~r~~~q~~~ 339 (467)
T KOG3608|consen 292 PFKCDECDTRCVRESDLAKHVQVHS-KT-------------------------------VYQCEHPDCHYSVRTYTQMRR 339 (467)
T ss_pred CccccchhhhhccHHHHHHHHHhcc-cc-------------------------------ceecCCCCCcHHHHHHHHHHH
Confidence 9999999999999999999999876 32 289988 9999999999999
Q ss_pred HhhccccccCCCCccccCccccccCChHHHHhhhhh-c-----cCCCcccCCcCcccccC
Q psy15135 835 HIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRV-H-----TNEKPYKCKDCGAAFNH 888 (1000)
Q Consensus 835 H~~~~h~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~-H-----~~~~p~~C~~C~~~f~~ 888 (1000)
|++.||.. ..+-+|.|..|++.|++-.+|-+|++. | .|-+.|.=..|.-.|.+
T Consensus 340 H~~evhEg-~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~PsGh~RFtYk~~edG~mR 398 (467)
T KOG3608|consen 340 HFLEVHEG-NNPILYACHCCDRFFTSGKSLSAHLMKKHGFRLPSGHKRFTYKVDEDGFMR 398 (467)
T ss_pred HHHHhccC-CCCCceeeecchhhhccchhHHHHHHHhhcccCCCCCCceeeeeccCceee
Confidence 99865422 235679999999999999999999754 4 35556666666666654
No 8
>KOG3623|consensus
Probab=99.82 E-value=1.9e-20 Score=196.93 Aligned_cols=124 Identities=27% Similarity=0.554 Sum_probs=100.0
Q ss_pred CccCCcCcccccChHHHHhhhhhhccCCCCCCCCcccccccccCChHHHHHHHHHhhccccccCccccccccccCccccc
Q psy15135 103 RFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICGFYHKH 182 (1000)
Q Consensus 103 ~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~~~~~~~C~~C~~~f~~ 182 (1000)
..+|++|++.+.....|+.|++..|- ..+..|.|..|.++|..+..|.+||.+|.....-
T Consensus 210 lltcpycdrgykrltslkeHikyrhe--kne~nfsC~lCsytFAyRtQLErhm~~hkpg~dq------------------ 269 (1007)
T KOG3623|consen 210 LLTCPYCDRGYKRLTSLKEHIKYRHE--KNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQ------------------ 269 (1007)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHh--hCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcc------------------
Confidence 36899999999999999999988883 3455689999999999999999999999653321
Q ss_pred hHHHHHHHhhccCCCCCCCccCCcccccchhccccccccCCCCceecCCcCccccchhhHHHHHhhhccccccCCccccc
Q psy15135 183 KKMIYRHIKEHIEPKKQEKKVCDICSAEVIHLGTHQKVAHSGVTYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQ 262 (1000)
Q Consensus 183 ~~~l~~H~~~h~~~~~~~~~~C~~c~~~~~~l~~H~~~~~~~~~y~C~~C~~~f~~~~~L~~H~~~~H~~h~~~k~~~C~ 262 (1000)
| ++.. ..-..+.|+|..|+|.|..+-.|+.|+|+ |+|+|||.|+
T Consensus 270 ------a--~slt------------------------qsa~lRKFKCtECgKAFKfKHHLKEHlRI----HSGEKPfeCp 313 (1007)
T KOG3623|consen 270 ------A--ISLT------------------------QSALLRKFKCTECGKAFKFKHHLKEHLRI----HSGEKPFECP 313 (1007)
T ss_pred ------c--cccc------------------------chhhhccccccccchhhhhHHHHHhhhee----ecCCCCcCCc
Confidence 0 0000 00011569999999999999999999999 9999999999
Q ss_pred ccCCcccCchHHHHHhhhcc
Q psy15135 263 YCNKEFPFQGYLNKHMKTHN 282 (1000)
Q Consensus 263 ~C~k~F~~~~~L~~H~~~h~ 282 (1000)
.|+|+|...+++..||....
T Consensus 314 nCkKRFSHSGSySSHmSSKK 333 (1007)
T KOG3623|consen 314 NCKKRFSHSGSYSSHMSSKK 333 (1007)
T ss_pred ccccccccCCcccccccccc
Confidence 99999999999999987653
No 9
>KOG3576|consensus
Probab=99.61 E-value=4.7e-17 Score=144.29 Aligned_cols=107 Identities=30% Similarity=0.479 Sum_probs=93.0
Q ss_pred CCcccCCCCCccccchhhHHHHhhccccccCCCCccccCccccccCChHHHHhhhhhccCCCcccCCcCcccccCchhhh
Q psy15135 814 GQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLK 893 (1000)
Q Consensus 814 ~~~~~C~~C~~~f~~~~~L~~H~~~~h~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~C~~~f~~~~~L~ 893 (1000)
+..|.|.+|||.|....-|.+|+ .-|...|.|-|..|||.|...-.|++|+|+|||.+||+|..|+++|+++.+|.
T Consensus 115 ~d~ftCrvCgK~F~lQRmlnrh~----kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsle 190 (267)
T KOG3576|consen 115 QDSFTCRVCGKKFGLQRMLNRHL----KCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLE 190 (267)
T ss_pred CCeeeeehhhhhhhHHHHHHHHh----hhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHH
Confidence 34599999999999999999999 47999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCC-----------CCCCCCCCCCCCCCCCCCccccC
Q psy15135 894 NHKNSSCP-----------KRDMTATPPAPRRTESNTRHSHL 924 (1000)
Q Consensus 894 ~H~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 924 (1000)
.|++..|+ ++-|.|+.|+...........|+
T Consensus 191 shl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~ 232 (267)
T KOG3576|consen 191 SHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHL 232 (267)
T ss_pred HHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHH
Confidence 99987665 34578999987655444444444
No 10
>KOG3576|consensus
Probab=99.60 E-value=1.6e-16 Score=140.95 Aligned_cols=115 Identities=27% Similarity=0.491 Sum_probs=104.4
Q ss_pred CCCcCCcccCcccCChhHHHhHHHHhhCCcchhccccccccchhhhhhhHHhhhcccCCCCcccCCCCCccccchhhHHH
Q psy15135 755 ETSSLCYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQYHVCPHCGKKFTRKAELQL 834 (1000)
Q Consensus 755 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~C~~c~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~L~~ 834 (1000)
...|.|.+|++.|.-...|.+|++-|...+. |-|..|||.|....+|++
T Consensus 115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr-------------------------------~lct~cgkgfndtfdlkr 163 (267)
T KOG3576|consen 115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDVKR-------------------------------HLCTFCGKGFNDTFDLKR 163 (267)
T ss_pred CCeeeeehhhhhhhHHHHHHHHhhhccHHHH-------------------------------HHHhhccCcccchhhhhh
Confidence 4568999999999999999999998876554 899999999999999999
Q ss_pred HhhccccccCCCCccccCccccccCChHHHHhhhhhccC-----------CCcccCCcCcccccCchhhhhccccCCCCC
Q psy15135 835 HIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTN-----------EKPYKCKDCGAAFNHNVSLKNHKNSSCPKR 903 (1000)
Q Consensus 835 H~~~~h~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-----------~~p~~C~~C~~~f~~~~~L~~H~~~~~~~~ 903 (1000)
|+ ++|+|.+||+|+.|+|+|+++-.|..|++.-+| +|.|.|+.||.+-.....+..|++.|++..
T Consensus 164 h~----rthtgvrpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~S 239 (267)
T KOG3576|consen 164 HT----RTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFS 239 (267)
T ss_pred hh----ccccCccccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCC
Confidence 99 589999999999999999999999999875544 578999999999999999999999998765
Q ss_pred C
Q psy15135 904 D 904 (1000)
Q Consensus 904 ~ 904 (1000)
|
T Consensus 240 p 240 (267)
T KOG3576|consen 240 P 240 (267)
T ss_pred H
Confidence 4
No 11
>KOG1146|consensus
Probab=99.23 E-value=2.4e-11 Score=139.47 Aligned_cols=98 Identities=23% Similarity=0.315 Sum_probs=62.6
Q ss_pred hccccccCCCCccc-ccHHHHHhhhhhhcCC----CCcccccccccccccchHHHHHhhhhccCCCccccccchhhhhhh
Q psy15135 346 EEEVWQCRHCPLKH-RSHDLLLRHYTKEHGG----YDWASVCYYCGYFNGHKKMIYLHIKDHVAPKKREMKICDICCAEV 420 (1000)
Q Consensus 346 ~~~~~~C~~C~~~f-~~~~~l~~H~~~~~~~----~~~~~~C~~C~~~~~~~~~l~~H~~~h~~~~~~~c~~C~~~~~~~ 420 (1000)
..+++.|-.|+... .+...|+.|....... ....+.|.+|.+....+.++..|.++......
T Consensus 731 s~k~~~civcd~~st~~l~~l~~h~~~~rs~ke~v~g~~~~c~l~~y~t~~kanfqlh~Ktdkh~qk------------- 797 (1406)
T KOG1146|consen 731 SLKVFDCIVCDVFSTDRLDQLWFHNTRERSRKEQVPGDVPSCKLKPYATNTKANFQLHNKTDKHVQK------------- 797 (1406)
T ss_pred HHHHHHHhhhhhhhhhhHHHHhhcchhhhhhhhcccCCCCcceecccccccchhhhhhcccchhhhc-------------
Confidence 34678899998654 4556777887543321 22368899999999999999999876432222
Q ss_pred hhHHhHHHhhcCC--------------CcccCCcccccCCChHHHHHHHH
Q psy15135 421 LHLQQHQKAAHSG--------------VCYDCTFCGKGFTRKAELNIHIK 456 (1000)
Q Consensus 421 ~~L~~H~~~~h~~--------------~~~~C~~C~~~f~~~~~l~~H~~ 456 (1000)
..++.|++.--.. +-.+|..|..-..+..-|..|-+
T Consensus 798 ~~~~~hikegg~a~~~~t~~la~~~~P~~l~cn~cd~~Tns~~~L~lh~~ 847 (1406)
T KOG1146|consen 798 YQLRAHIKEGGPANEYPTKTLASGPNPVHLKCNACDTPTNSPEPLLLHTP 847 (1406)
T ss_pred cchhhhhhccCCccCCcchhhhcCCCccccccccccCCCCCccccccCCC
Confidence 2234444322111 23468888887777777777754
No 12
>KOG1146|consensus
Probab=99.08 E-value=4.5e-11 Score=137.31 Aligned_cols=283 Identities=18% Similarity=0.258 Sum_probs=162.4
Q ss_pred cccchhhhhcChhhHHHHHHhhhCCCCCCCCccccchhhcCChHHHHHHHHHhcCCCCCCccccccccchhhhhhh--hh
Q psy15135 15 TCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVV--NL 92 (1000)
Q Consensus 15 ~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~C~~C~~~~~--~l 92 (1000)
.|.-|+..|.+...|..|+.+-+..+ +.++|+.|++.|+....|..|||.+|..++. .+|-..-. .+
T Consensus 438 e~~~~e~~~~s~r~~~~~t~~L~S~~--kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~---------~~c~~gq~~~~~ 506 (1406)
T KOG1146|consen 438 ELTKAEPLLESKRSLEGQTVVLHSFF--KTLKCPKCNWHYKLAQTLGVHMRSKHPESQS---------AYCKAGQNHPRL 506 (1406)
T ss_pred cccchhhhhhhhcccccceeeeeccc--ccccCCccchhhhhHHHhhhcccccccccch---------hHhHhccccccc
Confidence 35667788888888888888766553 6778999999999999999999988853322 11111110 11
Q ss_pred hhhh-hhcCCCCccCCcCcccccChHHHHhhhhh-hccCC--------------------------------------CC
Q psy15135 93 AEHK-LCHEPPRFTCEYCVKPFRRTQELRNHVKA-VHLTE--------------------------------------TP 132 (1000)
Q Consensus 93 ~~h~-~~h~~~~~~C~~C~~~f~~~~~L~~H~~~-~h~~~--------------------------------------~~ 132 (1000)
.+-. ..-..++|.|..|..++..+.+|.+|++. .|..+ ..
T Consensus 507 arg~~~~~~~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pkt 586 (1406)
T KOG1146|consen 507 ARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKT 586 (1406)
T ss_pred cccccccCCCCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCC
Confidence 1111 11126799999999999999999999853 22110 11
Q ss_pred CCCCcccccccccCChHHHHHHHHHhhcccc-ccCccccccccccCccccchHHHHHHHhhccCCCCC------------
Q psy15135 133 EERPRCEVCGKTFGLKEYLRRHMRTHRVERK-YNGFESAALCFICGFYHKHKKMIYRHIKEHIEPKKQ------------ 199 (1000)
Q Consensus 133 ~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~-~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~------------ 199 (1000)
.-.|.|.+|++.-.-..+|+.||..-....+ . .|..++..+.....+..+-+.+..+...
T Consensus 587 kP~~~C~vc~yetniarnlrihmtss~~s~~p~-------~~Lq~~it~~l~~~~~~~~~lp~tps~~~~s~~~l~qkl~ 659 (1406)
T KOG1146|consen 587 KPSWRCEVCSYETNIARNLRIHMTASPSSSPPS-------LVLQQNITSSLASLLGGQGRLPFTPSSPPSSDYELSQKLE 659 (1406)
T ss_pred CCCcchhhhcchhhhhhccccccccCCCCCChH-------HHhhhcchhhccccccCcCCCCCCCCCCccccchhhhhhc
Confidence 1258999999999999999999974222111 1 3333443333333333333322100000
Q ss_pred -------------CC-------ccCC---------cc-cccch----------------hccc-ccc-ccCCCCceecCC
Q psy15135 200 -------------EK-------KVCD---------IC-SAEVI----------------HLGT-HQK-VAHSGVTYNCKF 231 (1000)
Q Consensus 200 -------------~~-------~~C~---------~c-~~~~~----------------~l~~-H~~-~~~~~~~y~C~~ 231 (1000)
.. ..++ .- +..+. .|.. ++. ..++.+.+.|-+
T Consensus 660 l~~~~~e~~a~~as~~~~~~~~~~~~~~~aPt~s~~g~~~~~~~~~~~~~~~~~~~aa~~l~~a~~~~~sps~k~~~civ 739 (1406)
T KOG1146|consen 660 LPDLSLEVAAKPASGLDGQLQLIRADPFLAPTGSEVGGGESLSPRDKLLRLTILPEAAMILGRAYMQDNSPSLKVFDCIV 739 (1406)
T ss_pred cccccccccccccccccchhhhccCCcccCCCCCCCCCCCCCCcccccCcccccHHHHhhhhhcccCCCCHHHHHHHHhh
Confidence 00 0000 00 00000 0000 000 011225688999
Q ss_pred cCcc-ccchhhHHHHHhhhcc--ccccCCcccccccCCcccCchHHHHHhhhccCCCCCC--------------------
Q psy15135 232 CSMK-FTRVGQMNIHIKTVHL--KHMLEKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGP-------------------- 288 (1000)
Q Consensus 232 C~~~-f~~~~~L~~H~~~~H~--~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~-------------------- 288 (1000)
|+.- ..+...|..|+..--. .-.....|.|.+|.+....+.+++.|.++-.+....+
T Consensus 740 cd~~st~~l~~l~~h~~~~rs~ke~v~g~~~~c~l~~y~t~~kanfqlh~Ktdkh~qk~~~~~hikegg~a~~~~t~~la 819 (1406)
T KOG1146|consen 740 CDVFSTDRLDQLWFHNTRERSRKEQVPGDVPSCKLKPYATNTKANFQLHNKTDKHVQKYQLRAHIKEGGPANEYPTKTLA 819 (1406)
T ss_pred hhhhhhhhHHHHhhcchhhhhhhhcccCCCCcceecccccccchhhhhhcccchhhhccchhhhhhccCCccCCcchhhh
Confidence 9874 4456677777543110 0123346899999999999999999977643211110
Q ss_pred CCCCcceecccccchhhhhhhhhhccc
Q psy15135 289 GGGGHVTYTCKQCNLTFTNKHLFRNHK 315 (1000)
Q Consensus 289 ~~~~~~~~~C~~C~~~f~~~~~l~~H~ 315 (1000)
.+......+|..|..--....-|..|-
T Consensus 820 ~~~~P~~l~cn~cd~~Tns~~~L~lh~ 846 (1406)
T KOG1146|consen 820 SGPNPVHLKCNACDTPTNSPEPLLLHT 846 (1406)
T ss_pred cCCCccccccccccCCCCCccccccCC
Confidence 011233456888887777666676664
No 13
>PHA02768 hypothetical protein; Provisional
Probab=99.06 E-value=6.2e-11 Score=83.16 Aligned_cols=45 Identities=18% Similarity=0.319 Sum_probs=40.4
Q ss_pred ccccCccccccCChHHHHhhhhhccCCCcccCCcCcccccCchhhhh
Q psy15135 848 TYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKN 894 (1000)
Q Consensus 848 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~C~~~f~~~~~L~~ 894 (1000)
-|+|+.||+.|++.++|..||++|+ +||+|..|++.|.+.+.|..
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~~ 49 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYIE 49 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeEE
Confidence 4899999999999999999999998 79999999999998888754
No 14
>PHA00733 hypothetical protein
Probab=99.05 E-value=9.1e-11 Score=103.12 Aligned_cols=84 Identities=19% Similarity=0.318 Sum_probs=72.3
Q ss_pred CcccCCCCCccccchhhHHHH--hhccccccCCCCccccCccccccCChHHHHhhhhhccCCCcccCCcCcccccCchhh
Q psy15135 815 QYHVCPHCGKKFTRKAELQLH--IKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSL 892 (1000)
Q Consensus 815 ~~~~C~~C~~~f~~~~~L~~H--~~~~h~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~C~~~f~~~~~L 892 (1000)
+++.|.+|++.|.....|..| ++.+ ..+.+++||.|+.|++.|.....|..|+++| +.+|.|++|+++|.....|
T Consensus 39 ~~~~~~~~~~~~~~~~~l~~~~~l~~~-~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL 115 (128)
T PHA00733 39 KRLIRAVVKTLIYNPQLLDESSYLYKL-LTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDST 115 (128)
T ss_pred hhHHHHHHhhhccChhhhcchHHHHhh-cccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHH
Confidence 358999999999998888877 3332 3445689999999999999999999999987 4689999999999999999
Q ss_pred hhccccCCC
Q psy15135 893 KNHKNSSCP 901 (1000)
Q Consensus 893 ~~H~~~~~~ 901 (1000)
..|++..|+
T Consensus 116 ~~H~~~~h~ 124 (128)
T PHA00733 116 LDHVCKKHN 124 (128)
T ss_pred HHHHHHhcC
Confidence 999987765
No 15
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.04 E-value=2.8e-10 Score=123.83 Aligned_cols=103 Identities=18% Similarity=0.431 Sum_probs=83.7
Q ss_pred CCcCCcccCcccCChhHHHhHHHHhhCCcchhccccccccchhhhhhhHHhhhcccCCCCcccCCCCCccccchhhHHHH
Q psy15135 756 TSSLCYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQYHVCPHCGKKFTRKAELQLH 835 (1000)
Q Consensus 756 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~C~~c~~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~L~~H 835 (1000)
..+.|+.|++.|. ...|..|++++| . ++.|+ ||+.+ .+..|..|
T Consensus 452 ~H~~C~~Cgk~f~-~s~LekH~~~~H--k-------------------------------pv~Cp-Cg~~~-~R~~L~~H 495 (567)
T PLN03086 452 NHVHCEKCGQAFQ-QGEMEKHMKVFH--E-------------------------------PLQCP-CGVVL-EKEQMVQH 495 (567)
T ss_pred cCccCCCCCCccc-hHHHHHHHHhcC--C-------------------------------CccCC-CCCCc-chhHHHhh
Confidence 3457999999985 678999998875 2 38999 99765 67899999
Q ss_pred hhccccccCCCCccccCccccccC----------ChHHHHhhhhhccCCCcccCCcCcccccCchhhhhccccCC
Q psy15135 836 IKGIHLKHQLEKTYICEYCHKEFT----------FYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNSSC 900 (1000)
Q Consensus 836 ~~~~h~~h~~~k~~~C~~C~k~f~----------~~~~L~~H~~~H~~~~p~~C~~C~~~f~~~~~L~~H~~~~~ 900 (1000)
+ ..|.+++++.|++|++.|. ..+.|..|+.++ |.+++.|..||+.|..+ .|..|+..-|
T Consensus 496 ~----~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrlr-dm~~H~~~~h 564 (567)
T PLN03086 496 Q----ASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSCGRSVMLK-EMDIHQIAVH 564 (567)
T ss_pred h----hccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEccccCCeeeeh-hHHHHHHHhh
Confidence 8 4789999999999999995 246899999996 99999999999888765 4777775433
No 16
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.92 E-value=2.1e-09 Score=117.03 Aligned_cols=139 Identities=22% Similarity=0.484 Sum_probs=82.0
Q ss_pred ccchhhhhhh--hhhhhhhhcCCCCccCCc--CcccccChHHHHhhhhhhccCCCCCCCCcccccccccCChHHHHHHHH
Q psy15135 81 VCEICSARVV--NLAEHKLCHEPPRFTCEY--CVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMR 156 (1000)
Q Consensus 81 ~C~~C~~~~~--~l~~h~~~h~~~~~~C~~--C~~~f~~~~~L~~H~~~~h~~~~~~~~~~C~~C~~~f~~~~~L~~H~~ 156 (1000)
.|..|..... +|..|+..-....-.|+. |+..|. +..|..| +.|+.|++.|. ...|..|++
T Consensus 409 ~C~NC~~~i~l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~-r~el~~H-------------~~C~~Cgk~f~-~s~LekH~~ 473 (567)
T PLN03086 409 ECRNCKHYIPSRSIALHEAYCSRHNVVCPHDGCGIVLR-VEEAKNH-------------VHCEKCGQAFQ-QGEMEKHMK 473 (567)
T ss_pred ECCCCCCccchhHHHHHHhhCCCcceeCCcccccceee-ccccccC-------------ccCCCCCCccc-hHHHHHHHH
Confidence 5766666544 566666443344456763 777773 3333333 35777777775 566777777
Q ss_pred HhhccccccCccccccccccCccccchHHHHHHHhhccCCCCCCCccCCcccccchhccccccccCCCCceecCCcCccc
Q psy15135 157 THRVERKYNGFESAALCFICGFYHKHKKMIYRHIKEHIEPKKQEKKVCDICSAEVIHLGTHQKVAHSGVTYNCKFCSMKF 236 (1000)
Q Consensus 157 ~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~C~~c~~~~~~l~~H~~~~~~~~~y~C~~C~~~f 236 (1000)
+|+ +++ .|+ ||+.+ .+..|..|+..|... +++.|.+|++.|
T Consensus 474 ~~H--kpv-------~Cp-Cg~~~-~R~~L~~H~~thCp~----------------------------Kpi~C~fC~~~v 514 (567)
T PLN03086 474 VFH--EPL-------QCP-CGVVL-EKEQMVQHQASTCPL----------------------------RLITCRFCGDMV 514 (567)
T ss_pred hcC--CCc-------cCC-CCCCc-chhHHHhhhhccCCC----------------------------CceeCCCCCCcc
Confidence 764 445 677 77544 456666666554333 356666676666
Q ss_pred c----------chhhHHHHHhhhccccccCCcccccccCCcccCchHHHHHhh
Q psy15135 237 T----------RVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMK 279 (1000)
Q Consensus 237 ~----------~~~~L~~H~~~~H~~h~~~k~~~C~~C~k~F~~~~~L~~H~~ 279 (1000)
. ....|..|... .+.+++.|..|++.|..+ .|..|+.
T Consensus 515 ~~g~~~~d~~d~~s~Lt~HE~~-----CG~rt~~C~~Cgk~Vrlr-dm~~H~~ 561 (567)
T PLN03086 515 QAGGSAMDVRDRLRGMSEHESI-----CGSRTAPCDSCGRSVMLK-EMDIHQI 561 (567)
T ss_pred ccCccccchhhhhhhHHHHHHh-----cCCcceEccccCCeeeeh-hHHHHHH
Confidence 3 12356666554 256667777777666543 4555553
No 17
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.83 E-value=1.3e-09 Score=65.45 Aligned_cols=26 Identities=65% Similarity=1.246 Sum_probs=23.2
Q ss_pred HHHhhhhhccCCCcccCCcCcccccC
Q psy15135 863 YLRRHMRVHTNEKPYKCKDCGAAFNH 888 (1000)
Q Consensus 863 ~L~~H~~~H~~~~p~~C~~C~~~f~~ 888 (1000)
+|.+||++|+|++||+|++|+++|.+
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence 58899999999999999999999864
No 18
>PHA00733 hypothetical protein
Probab=98.72 E-value=1.1e-08 Score=90.10 Aligned_cols=85 Identities=19% Similarity=0.287 Sum_probs=66.1
Q ss_pred CCCccCCcCcccccChHHHHhh--hhhhccCCCCCCCCcccccccccCChHHHHHHHHHhhccccccCccccccccccCc
Q psy15135 101 PPRFTCEYCVKPFRRTQELRNH--VKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICGF 178 (1000)
Q Consensus 101 ~~~~~C~~C~~~f~~~~~L~~H--~~~~h~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~~~~~~~C~~C~~ 178 (1000)
.+++.|.+|++.|.....|..| +. .|+...+.++|.|+.|++.|.+...|..|++.| +.+| .|.+|++
T Consensus 38 ~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~-------~C~~CgK 107 (128)
T PHA00733 38 QKRLIRAVVKTLIYNPQLLDESSYLY-KLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSK-------VCPVCGK 107 (128)
T ss_pred hhhHHHHHHhhhccChhhhcchHHHH-hhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCc-------cCCCCCC
Confidence 5678899999888888877776 32 223334577899999999999999999999876 2345 7999999
Q ss_pred cccchHHHHHHHhhccC
Q psy15135 179 YHKHKKMIYRHIKEHIE 195 (1000)
Q Consensus 179 ~f~~~~~l~~H~~~h~~ 195 (1000)
.|.....|..|+...++
T Consensus 108 ~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 108 EFRNTDSTLDHVCKKHN 124 (128)
T ss_pred ccCCHHHHHHHHHHhcC
Confidence 99999999999876543
No 19
>PHA02768 hypothetical protein; Provisional
Probab=98.69 E-value=5.6e-09 Score=73.48 Aligned_cols=44 Identities=20% Similarity=0.414 Sum_probs=40.0
Q ss_pred cccccchhhhhcChhhHHHHHHhhhCCCCCCCCccccchhhcCChHHHH
Q psy15135 13 AFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLT 61 (1000)
Q Consensus 13 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~~~f~~~~~L~ 61 (1000)
.|+|++||+.|....+|..||++|+ +|++ |..|++.|...+.|.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~k---c~~C~k~f~~~s~l~ 48 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHN--TNLK---LSNCKRISLRTGEYI 48 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcC--Cccc---CCcccceecccceeE
Confidence 5899999999999999999999998 6777 999999999887764
No 20
>KOG3993|consensus
Probab=98.68 E-value=9e-09 Score=103.42 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=26.2
Q ss_pred CCCCcccccchhhhccChHHHHHHHHhhcC
Q psy15135 560 AGEEAFTCRICQAVFDKYVRLCGHLRTVHN 589 (1000)
Q Consensus 560 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~ 589 (1000)
..+..|.|.+|++.|.....|+.|+.+|+.
T Consensus 352 ss~gi~~C~~C~KkFrRqAYLrKHqlthq~ 381 (500)
T KOG3993|consen 352 SSSGIFSCHTCGKKFRRQAYLRKHQLTHQR 381 (500)
T ss_pred ccCceeecHHhhhhhHHHHHHHHhHHhhhc
Confidence 334589999999999999999999999875
No 21
>KOG3993|consensus
Probab=98.50 E-value=1.8e-08 Score=101.35 Aligned_cols=180 Identities=18% Similarity=0.227 Sum_probs=105.1
Q ss_pred cccCCcccccCCChHHHHHHHHHhhhhcccCCcccCccccccCCChHHHHHHHhhhcCCC--------------------
Q psy15135 435 CYDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDV-------------------- 494 (1000)
Q Consensus 435 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~-------------------- 494 (1000)
.|.|.+|...|.+...|..|.-. -...-.|+|+.|+|.|.-..+|..|.|+|....
T Consensus 267 dyiCqLCK~kYeD~F~LAQHrC~----RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~ 342 (500)
T KOG3993|consen 267 DYICQLCKEKYEDAFALAQHRCP----RIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEV 342 (500)
T ss_pred HHHHHHHHHhhhhHHHHhhccCC----eeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhh
Confidence 47888888888888888888541 222234888888888888888888888875321
Q ss_pred ---------CCCCCccCCcCCcccCCchhHHhhhhcCCCcccccccCC--------CCCCCCchhh-hHHHHhhcCCCCC
Q psy15135 495 ---------QVPHPYKCTACNAAFNTKSALNVHRKTCPNLELLNRDLL--------PNQTGTDDEK-KLEQKEMAKKPTV 556 (1000)
Q Consensus 495 ---------~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~~ 556 (1000)
.....|.|..|++.|.+...|++|+.+|+.......... +......... .....+......+
T Consensus 343 ~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl 422 (500)
T KOG3993|consen 343 QEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVL 422 (500)
T ss_pred hhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhccccccccccccccccccccccccee
Confidence 122458999999999999999999888765543332100 0000000000 0000000000000
Q ss_pred CCCCCCCcccccchhhhccChHHHHHHHHhhcCCCCCCccccccccccccChHHHHHHHHhhcCC
Q psy15135 557 TEPAGEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGG 621 (1000)
Q Consensus 557 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~ 621 (1000)
..........|.+|+..+.+...--.+.+.-..+ +.|.|.+|.-.|.+...|.+|+...|..
T Consensus 423 ~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~---q~f~~ky~~atfyss~~ltrhin~~Hps 484 (500)
T KOG3993|consen 423 YVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAE---QGFTCKYCPATFYSSPGLTRHINKCHPS 484 (500)
T ss_pred eeeccccccCCCCCCCCcccCCCCCccccccchh---hccccccchHhhhcCcchHhHhhhcChH
Confidence 0001112235677776666554443443333333 3447899999999999999998877753
No 22
>PHA00616 hypothetical protein
Probab=98.48 E-value=4.5e-08 Score=65.27 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=30.1
Q ss_pred ccccCccccccCChHHHHhhhhhccCCCcccCCcC
Q psy15135 848 TYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDC 882 (1000)
Q Consensus 848 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~C 882 (1000)
||+|..||+.|.+++.|.+|++.|+|++||.|+.=
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~~ 35 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEYF 35 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCccceeEE
Confidence 68899999999999999999999999998888753
No 23
>PHA00732 hypothetical protein
Probab=98.30 E-value=4e-07 Score=71.77 Aligned_cols=46 Identities=28% Similarity=0.496 Sum_probs=31.9
Q ss_pred ccccCccccccCChHHHHhhhhh-ccCCCcccCCcCcccccCchhhhhccccC
Q psy15135 848 TYICEYCHKEFTFYNYLRRHMRV-HTNEKPYKCKDCGAAFNHNVSLKNHKNSS 899 (1000)
Q Consensus 848 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~~p~~C~~C~~~f~~~~~L~~H~~~~ 899 (1000)
||.|+.|++.|.+...|..|++. |+ ++.|+.||++|. .|..|.++.
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~~ 47 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYSQ 47 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhccc
Confidence 56777777777777777777763 54 356777777776 477776543
No 24
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.17 E-value=6.9e-07 Score=53.64 Aligned_cols=26 Identities=46% Similarity=0.763 Sum_probs=20.8
Q ss_pred hHHHHHHhhhCCCCCCCCccccchhhcCC
Q psy15135 28 RLCGHLRTVHNEKPEKSNLCFVCAKVFAT 56 (1000)
Q Consensus 28 ~L~~H~~~h~~~~~~~~~~C~~C~~~f~~ 56 (1000)
+|..||++|++++||+ |++|++.|.+
T Consensus 1 ~l~~H~~~H~~~k~~~---C~~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYK---CPYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEE---ESSSSEEESS
T ss_pred CHHHHhhhcCCCCCCC---CCCCcCeeCc
Confidence 4778888888888877 8888888864
No 25
>PHA00616 hypothetical protein
Probab=98.14 E-value=1.4e-06 Score=58.22 Aligned_cols=31 Identities=26% Similarity=0.544 Sum_probs=28.6
Q ss_pred cccccchhhhhcChhhHHHHHHhhhCCCCCC
Q psy15135 13 AFTCRICQAVFDKYVRLCGHLRTVHNEKPEK 43 (1000)
Q Consensus 13 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~ 43 (1000)
||+|..||++|...+.|..|++.||+++|+.
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~ 31 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLT 31 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCccc
Confidence 6899999999999999999999999998886
No 26
>PHA00732 hypothetical protein
Probab=98.08 E-value=2.4e-06 Score=67.44 Aligned_cols=49 Identities=24% Similarity=0.521 Sum_probs=41.6
Q ss_pred cccCCCCCccccchhhHHHHhhccccccCCCCccccCccccccCChHHHHhhhhhccC
Q psy15135 816 YHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTN 873 (1000)
Q Consensus 816 ~~~C~~C~~~f~~~~~L~~H~~~~h~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~ 873 (1000)
+|.|+.||+.|.+...|+.|++. .|+ ++.|+.||++|. .|..|++++.+
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~---~H~---~~~C~~CgKsF~---~l~~H~~~~~~ 49 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARR---NHT---LTKCPVCNKSYR---RLNQHFYSQYD 49 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhc---ccC---CCccCCCCCEeC---ChhhhhcccCC
Confidence 48999999999999999999853 244 468999999998 58899988765
No 27
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.92 E-value=1.4e-05 Score=58.54 Aligned_cols=52 Identities=29% Similarity=0.583 Sum_probs=40.5
Q ss_pred CccCCcCcccccChHHHHhhhhhhccCCCCCCCCcccccccccCChHHHHHHHHHhh
Q psy15135 103 RFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHR 159 (1000)
Q Consensus 103 ~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~H~ 159 (1000)
.|+|++|++ ..+...|..|+...|..+ .+.+.|++|...+. .+|..||..++
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~--~~~v~CPiC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRSE--SKNVVCPICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcCC--CCCccCCCchhhhh--hHHHHHHHHhc
Confidence 489999999 556788999998888533 34689999998755 48888988765
No 28
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.84 E-value=2.6e-05 Score=57.20 Aligned_cols=52 Identities=27% Similarity=0.558 Sum_probs=40.5
Q ss_pred cccccchhhhhcChhhHHHHHHhhhCCCCCCCCccccchhhcCChHHHHHHHHHhc
Q psy15135 13 AFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMH 68 (1000)
Q Consensus 13 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h 68 (1000)
.|.|++|++.| +...|..|....|...+ +.++|++|...+. .+|..|++..|
T Consensus 2 ~f~CP~C~~~~-~~~~L~~H~~~~H~~~~-~~v~CPiC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 2 SFTCPYCGKGF-SESSLVEHCEDEHRSES-KNVVCPICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CcCCCCCCCcc-CHHHHHHHHHhHCcCCC-CCccCCCchhhhh--hHHHHHHHHhc
Confidence 48999999954 56889999888776543 3467999998755 48999998776
No 29
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.70 E-value=1.5e-05 Score=46.69 Aligned_cols=22 Identities=45% Similarity=0.863 Sum_probs=12.5
Q ss_pred cccCccccccCChHHHHhhhhh
Q psy15135 849 YICEYCHKEFTFYNYLRRHMRV 870 (1000)
Q Consensus 849 ~~C~~C~k~f~~~~~L~~H~~~ 870 (1000)
|+|++|++.|.++..|..||+.
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 4555555555555555555554
No 30
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.55 E-value=4.3e-05 Score=44.69 Aligned_cols=22 Identities=50% Similarity=1.059 Sum_probs=12.7
Q ss_pred CcccccccccCChHHHHHHHHH
Q psy15135 136 PRCEVCGKTFGLKEYLRRHMRT 157 (1000)
Q Consensus 136 ~~C~~C~~~f~~~~~L~~H~~~ 157 (1000)
|+|++|++.|.++..|..||+.
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 3455566666666666666554
No 31
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.41 E-value=6.1e-05 Score=73.23 Aligned_cols=24 Identities=33% Similarity=0.861 Sum_probs=16.0
Q ss_pred CCcccCCcCcccccCchhhhhccc
Q psy15135 874 EKPYKCKDCGAAFNHNVSLKNHKN 897 (1000)
Q Consensus 874 ~~p~~C~~C~~~f~~~~~L~~H~~ 897 (1000)
.|||.|++|+|+|.....|+-|+.
T Consensus 396 ~KPYrCevC~KRYKNlNGLKYHr~ 419 (423)
T COG5189 396 DKPYRCEVCDKRYKNLNGLKYHRK 419 (423)
T ss_pred CCceeccccchhhccCccceeccc
Confidence 467777777777777666666653
No 32
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.26 E-value=0.00011 Score=45.05 Aligned_cols=25 Identities=40% Similarity=1.096 Sum_probs=13.2
Q ss_pred cccCCcCcccccCchhhhhccccCC
Q psy15135 876 PYKCKDCGAAFNHNVSLKNHKNSSC 900 (1000)
Q Consensus 876 p~~C~~C~~~f~~~~~L~~H~~~~~ 900 (1000)
||+|++|++.|.....|..|++.|+
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhc
Confidence 3555555555555555555555443
No 33
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.22 E-value=0.00016 Score=42.87 Aligned_cols=23 Identities=43% Similarity=0.844 Sum_probs=10.6
Q ss_pred cccCccccccCChHHHHhhhhhc
Q psy15135 849 YICEYCHKEFTFYNYLRRHMRVH 871 (1000)
Q Consensus 849 ~~C~~C~k~f~~~~~L~~H~~~H 871 (1000)
|.|++|++.|.+...|..|+++|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHhh
Confidence 34555555555555555555443
No 34
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.19 E-value=0.00019 Score=42.57 Aligned_cols=23 Identities=39% Similarity=0.719 Sum_probs=11.0
Q ss_pred ccccchhhhhcChhhHHHHHHhh
Q psy15135 14 FTCRICQAVFDKYVRLCGHLRTV 36 (1000)
Q Consensus 14 ~~C~~C~~~f~~~~~L~~H~~~h 36 (1000)
|.|++|+++|.+...|..|+++|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHhh
Confidence 44555555555555555555544
No 35
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.17 E-value=0.00013 Score=62.90 Aligned_cols=73 Identities=23% Similarity=0.392 Sum_probs=21.7
Q ss_pred cCCCCCccccchhhHHHHhhccccccCCCCccccCccccccCChHHHHhhhhhccCCCcccCCcCcccccCchhhhhccc
Q psy15135 818 VCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKN 897 (1000)
Q Consensus 818 ~C~~C~~~f~~~~~L~~H~~~~h~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~C~~~f~~~~~L~~H~~ 897 (1000)
+|..|+..|.+...|..||...|..... ....+.....|..+++.-. ...+.|.+|++.|.....|..||+
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~--------~~~~l~~~~~~~~~~~~~~-~~~~~C~~C~~~f~s~~~l~~Hm~ 71 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIP--------DQKYLVDPNRLLNYLRKKV-KESFRCPYCNKTFRSREALQEHMR 71 (100)
T ss_dssp ---------------------------------------------------------SSEEBSSSS-EESSHHHHHHHHH
T ss_pred Cccccccccccccccccccccccccccc--------ccccccccccccccccccc-CCCCCCCccCCCCcCHHHHHHHHc
Confidence 5999999999999999999865544222 2223335555555554322 237999999999999999999999
Q ss_pred cC
Q psy15135 898 SS 899 (1000)
Q Consensus 898 ~~ 899 (1000)
.+
T Consensus 72 ~~ 73 (100)
T PF12756_consen 72 SK 73 (100)
T ss_dssp HT
T ss_pred Cc
Confidence 75
No 36
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.15 E-value=0.00023 Score=43.53 Aligned_cols=25 Identities=36% Similarity=0.727 Sum_probs=19.7
Q ss_pred ccccCccccccCChHHHHhhhhhcc
Q psy15135 848 TYICEYCHKEFTFYNYLRRHMRVHT 872 (1000)
Q Consensus 848 ~~~C~~C~k~f~~~~~L~~H~~~H~ 872 (1000)
||+|..|++.|.+...|..|++.|.
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhc
Confidence 5778888888888888888887774
No 37
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.07 E-value=0.00029 Score=60.65 Aligned_cols=73 Identities=21% Similarity=0.372 Sum_probs=16.2
Q ss_pred cCCcCcccccChHHHHhhhhhhccCCCCCCCCcccccccccCChHHHHHHHHHhhccccccCccccccccccCccccchH
Q psy15135 105 TCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICGFYHKHKK 184 (1000)
Q Consensus 105 ~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~~~~~~~C~~C~~~f~~~~ 184 (1000)
+|..|+..|.+...|..||...|..... ....+.....|..+++.-..+ . +.|.+|++.|.+..
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~--------~~~~l~~~~~~~~~~~~~~~~-~-------~~C~~C~~~f~s~~ 64 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIP--------DQKYLVDPNRLLNYLRKKVKE-S-------FRCPYCNKTFRSRE 64 (100)
T ss_dssp --------------------------------------------------------S-S-------EEBSSSS-EESSHH
T ss_pred Cccccccccccccccccccccccccccc--------cccccccccccccccccccCC-C-------CCCCccCCCCcCHH
Confidence 4888999999999999998877732211 111222333333333322111 1 26777777777777
Q ss_pred HHHHHHhhc
Q psy15135 185 MIYRHIKEH 193 (1000)
Q Consensus 185 ~l~~H~~~h 193 (1000)
.|..||+.+
T Consensus 65 ~l~~Hm~~~ 73 (100)
T PF12756_consen 65 ALQEHMRSK 73 (100)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHcCc
Confidence 777777754
No 38
>KOG2231|consensus
Probab=96.84 E-value=0.002 Score=71.96 Aligned_cols=22 Identities=27% Similarity=0.680 Sum_probs=17.5
Q ss_pred cccchhhcCChHHHHHHHHHhcC
Q psy15135 47 CFVCAKVFATRATLTLHIKQMHG 69 (1000)
Q Consensus 47 C~~C~~~f~~~~~L~~H~~~~h~ 69 (1000)
|..| -.|.+...|+.|+...|+
T Consensus 118 ~~~c-~~~~s~~~Lk~H~~~~H~ 139 (669)
T KOG2231|consen 118 CLHC-TEFKSVENLKNHMRDQHK 139 (669)
T ss_pred Cccc-cchhHHHHHHHHHHHhhh
Confidence 6677 667788999999987774
No 39
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=96.71 E-value=0.0005 Score=67.13 Aligned_cols=67 Identities=25% Similarity=0.354 Sum_probs=41.6
Q ss_pred ccceee---ccCCCccchhhHHHHHHHhhhhhhhhhhcCCCCC---CCCCCCcCCcccCcccCChhHHHhHHH
Q psy15135 712 ERKYKC---VCGDGFNFNVSLKVHMAKCAFYLKSLEKEGESDH---GGYETSSLCYHCGYYSKNRSTLKNHVR 778 (1000)
Q Consensus 712 ~k~~~C---~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~---~~~~~~~~C~~C~~~f~~~~~l~~H~~ 778 (1000)
+|||+| .|++.+.....|+.|+.--+-..+......+..+ ....+||.|+.|+|.+++...|+.|+.
T Consensus 347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~ 419 (423)
T COG5189 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK 419 (423)
T ss_pred CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence 466666 2666666666666666543322222222222212 223799999999999999999999964
No 40
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.70 E-value=0.001 Score=45.47 Aligned_cols=33 Identities=24% Similarity=0.615 Sum_probs=21.7
Q ss_pred CCCCCCcccccccccCChHHHHHHHHHhhcccc
Q psy15135 131 TPEERPRCEVCGKTFGLKEYLRRHMRTHRVERK 163 (1000)
Q Consensus 131 ~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~ 163 (1000)
..+.+..|++|+.+++...+|++||.++++.+|
T Consensus 20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp TTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred ccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 445677888888888888888888888777664
No 41
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.67 E-value=0.0012 Score=45.27 Aligned_cols=34 Identities=29% Similarity=0.501 Sum_probs=21.3
Q ss_pred cCCCCccccCccccccCChHHHHhhhhhccCCCc
Q psy15135 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876 (1000)
Q Consensus 843 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p 876 (1000)
...+.|-.|++|+..+.+..+|++||.++++.||
T Consensus 19 ~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 19 SQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp CTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred hccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 3456778888888888888888888877777665
No 42
>PRK04860 hypothetical protein; Provisional
Probab=96.58 E-value=0.00086 Score=61.54 Aligned_cols=40 Identities=33% Similarity=0.738 Sum_probs=34.6
Q ss_pred ccccCccccccCChHHHHhhhhhccCCCcccCCcCcccccCchh
Q psy15135 848 TYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVS 891 (1000)
Q Consensus 848 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~C~~~f~~~~~ 891 (1000)
+|.|. |++ ....+++|.++|+|+++|.|..|+..|.....
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~~ 158 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKGE 158 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEecc
Confidence 68998 987 77888999999999999999999999876543
No 43
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.58 E-value=0.005 Score=61.06 Aligned_cols=125 Identities=27% Similarity=0.445 Sum_probs=90.9
Q ss_pred CcCCc--ccCcccCChhHHHhHHHHhhCCcchhccccccccchhh------------hhhhHHhhhcccCCCCcc----c
Q psy15135 757 SSLCY--HCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSA------------EVVHLAIHKKHSHSGQYH----V 818 (1000)
Q Consensus 757 ~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~C~~c~~------------~~~~l~~h~~~~~~~~~~----~ 818 (1000)
.|.|| .|..+......|+.|.+..|+. +.|.+|-. ....|..|...-..+..| .
T Consensus 151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~--------~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~ 222 (493)
T COG5236 151 SFKCPKSKCHRRCGSLKELKKHYKAQHGF--------VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPL 222 (493)
T ss_pred HhcCCchhhhhhhhhHHHHHHHHHhhcCc--------EEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCch
Confidence 36776 5777777788999999998876 67888865 235566776544333333 5
Q ss_pred CCCCCccccchhhHHHHhhccccccCCCCccccCcccc-------ccCChHHHHhhhhhccCCCcccCCc--Cc----cc
Q psy15135 819 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHK-------EFTFYNYLRRHMRVHTNEKPYKCKD--CG----AA 885 (1000)
Q Consensus 819 C~~C~~~f~~~~~L~~H~~~~h~~h~~~k~~~C~~C~k-------~f~~~~~L~~H~~~H~~~~p~~C~~--C~----~~ 885 (1000)
|..|...|.....|..|++.. | | +|.+|++ -|.+-..|..|.+.- -|.|.+ |- ..
T Consensus 223 C~FC~~~FYdDDEL~~HcR~~---H--E---~ChICD~v~p~~~QYFK~Y~~Le~HF~~~----hy~ct~qtc~~~k~~v 290 (493)
T COG5236 223 CIFCKIYFYDDDELRRHCRLR---H--E---ACHICDMVGPIRYQYFKSYEDLEAHFRNA----HYCCTFQTCRVGKCYV 290 (493)
T ss_pred hhhccceecChHHHHHHHHhh---h--h---hhhhhhccCccchhhhhCHHHHHHHhhcC----ceEEEEEEEecCcEEE
Confidence 999999999999999999732 2 2 5666665 388889999998753 377755 42 35
Q ss_pred ccCchhhhhccccCCC
Q psy15135 886 FNHNVSLKNHKNSSCP 901 (1000)
Q Consensus 886 f~~~~~L~~H~~~~~~ 901 (1000)
|.....|..|+...|+
T Consensus 291 f~~~~el~~h~~~~h~ 306 (493)
T COG5236 291 FPYHTELLEHLTRFHK 306 (493)
T ss_pred eccHHHHHHHHHHHhh
Confidence 7888899999876554
No 44
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.53 E-value=0.0016 Score=39.31 Aligned_cols=23 Identities=43% Similarity=0.784 Sum_probs=12.6
Q ss_pred cccCccccccCChHHHHhhhhhc
Q psy15135 849 YICEYCHKEFTFYNYLRRHMRVH 871 (1000)
Q Consensus 849 ~~C~~C~k~f~~~~~L~~H~~~H 871 (1000)
|+|+.|+++|.....|..|++.|
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H 23 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTH 23 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHh
Confidence 34555555555555555555544
No 45
>KOG2231|consensus
Probab=96.47 E-value=0.031 Score=62.92 Aligned_cols=137 Identities=24% Similarity=0.513 Sum_probs=75.4
Q ss_pred ccccccccccHHHHHHHH-hHhcCccceee-------ccCCCccchhhHHHHHHHhhhhhhhhhhcCCCCCCCCCCCcCC
Q psy15135 689 CEVCGKTFGLKEYLRRHM-RTHRVERKYKC-------VCGDGFNFNVSLKVHMAKCAFYLKSLEKEGESDHGGYETSSLC 760 (1000)
Q Consensus 689 C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C-------~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C 760 (1000)
|..| -.|.+...|+.|| ..|..-.--.| +|-...-+...|..|+..-.. +...+.| --.|
T Consensus 118 ~~~c-~~~~s~~~Lk~H~~~~H~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~--------d~~s~rG---hp~C 185 (669)
T KOG2231|consen 118 CLHC-TEFKSVENLKNHMRDQHKLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDP--------DDESCRG---HPLC 185 (669)
T ss_pred Cccc-cchhHHHHHHHHHHHhhhhhccccccccceeeeeeeehehHHHHHHHHhcCCC--------ccccccC---Cccc
Confidence 5555 5555666666666 34432211122 233344456667777653110 0111111 2359
Q ss_pred cccCcccCChhHHHhHHHHhhCCcchhccccccccchhhhhhhHHhhhcccCCCCcccCCCC------CccccchhhHHH
Q psy15135 761 YHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQYHVCPHC------GKKFTRKAELQL 834 (1000)
Q Consensus 761 ~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~C~~c~~~~~~l~~h~~~~~~~~~~~C~~C------~~~f~~~~~L~~ 834 (1000)
..|...|-....|..|++.+| |.|.+| +.-|.....|..
T Consensus 186 ~~C~~~fld~~el~rH~~~~h-----------------------------------~~chfC~~~~~~neyy~~~~dLe~ 230 (669)
T KOG2231|consen 186 KFCHERFLDDDELYRHLRFDH-----------------------------------EFCHFCDYKTGQNEYYNDYDDLEE 230 (669)
T ss_pred hhhhhhhccHHHHHHhhccce-----------------------------------eheeecCcccccchhcccchHHHH
Confidence 999999999999999998876 344444 455777788888
Q ss_pred HhhccccccCCCCccccC--ccc-cccCChHHHHhhhh----hccCCCcccCC
Q psy15135 835 HIKGIHLKHQLEKTYICE--YCH-KEFTFYNYLRRHMR----VHTNEKPYKCK 880 (1000)
Q Consensus 835 H~~~~h~~h~~~k~~~C~--~C~-k~f~~~~~L~~H~~----~H~~~~p~~C~ 880 (1000)
|.+.. -|.|+ .|- +.|.....+..|++ .+.-++-|-|.
T Consensus 231 HfR~~--------HflCE~~~C~~~~f~~~~~~ei~lk~~~~~~~~e~~~~~~ 275 (669)
T KOG2231|consen 231 HFRKG--------HFLCEEEFCRTKKFYVAFELEIELKAHNRFIQHEKCYICR 275 (669)
T ss_pred Hhhhc--------CccccccccccceeeehhHHHHHHHhhccccchheeccCC
Confidence 88633 26666 453 33444434444444 33335555553
No 46
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.12 E-value=0.0047 Score=37.21 Aligned_cols=23 Identities=57% Similarity=0.979 Sum_probs=15.0
Q ss_pred CcccccccccCChHHHHHHHHHh
Q psy15135 136 PRCEVCGKTFGLKEYLRRHMRTH 158 (1000)
Q Consensus 136 ~~C~~C~~~f~~~~~L~~H~~~H 158 (1000)
|.|..|++.|.+...|..|++.|
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H 23 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTH 23 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHh
Confidence 45666666666666666666655
No 47
>KOG2785|consensus
Probab=95.99 E-value=0.014 Score=59.65 Aligned_cols=55 Identities=15% Similarity=0.307 Sum_probs=44.7
Q ss_pred CcccccchhhhccChHHHHHHHHhhcCCCC--------------------CCcccccccc---ccccChHHHHHHHHh
Q psy15135 563 EAFTCRICQAVFDKYVRLCGHLRTVHNEKP--------------------EKSNLCFVCA---KVFATRATLTLHIKQ 617 (1000)
Q Consensus 563 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~--------------------~~~~~C~~C~---~~f~~~~~l~~H~~~ 617 (1000)
.|-.|-.|++.+.+...-..||..+|+--. -..+.|-.|+ +.|.+....+.||..
T Consensus 165 ~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~ 242 (390)
T KOG2785|consen 165 IPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD 242 (390)
T ss_pred CCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence 456799999999999999999999987321 1234688888 999999999999974
No 48
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.92 E-value=0.013 Score=58.19 Aligned_cols=47 Identities=28% Similarity=0.565 Sum_probs=31.0
Q ss_pred cccchhhhccChHHHHHHHHhhcCCCCCCccccccccc-------cccChHHHHHHHHhhc
Q psy15135 566 TCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAK-------VFATRATLTLHIKQMH 619 (1000)
Q Consensus 566 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~C~~C~~-------~f~~~~~l~~H~~~~H 619 (1000)
.|..|...|-+-..|..|++..|. .|.+|++ .|.+...|..|.+..|
T Consensus 222 ~C~FC~~~FYdDDEL~~HcR~~HE-------~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h 275 (493)
T COG5236 222 LCIFCKIYFYDDDELRRHCRLRHE-------ACHICDMVGPIRYQYFKSYEDLEAHFRNAH 275 (493)
T ss_pred hhhhccceecChHHHHHHHHhhhh-------hhhhhhccCccchhhhhCHHHHHHHhhcCc
Confidence 477788888888888888877654 3666654 3555666666665333
No 49
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=95.70 E-value=0.0071 Score=35.61 Aligned_cols=23 Identities=30% Similarity=0.716 Sum_probs=12.4
Q ss_pred CcccccccccCChHHHHHHHHHhh
Q psy15135 136 PRCEVCGKTFGLKEYLRRHMRTHR 159 (1000)
Q Consensus 136 ~~C~~C~~~f~~~~~L~~H~~~H~ 159 (1000)
|+|+.|++... ...|.+|++.|+
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 45666666665 556666666554
No 50
>KOG2482|consensus
Probab=95.67 E-value=0.029 Score=55.94 Aligned_cols=53 Identities=23% Similarity=0.475 Sum_probs=41.3
Q ss_pred ccccchhhhccChHHHHHHHHhhcCCCC-----------CC-------------ccccccccccccChHHHHHHHHh
Q psy15135 565 FTCRICQAVFDKYVRLCGHLRTVHNEKP-----------EK-------------SNLCFVCAKVFATRATLTLHIKQ 617 (1000)
Q Consensus 565 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~-----------~~-------------~~~C~~C~~~f~~~~~l~~H~~~ 617 (1000)
..|-.|.....+...|..||...|.-.- |+ .-.|..|.-.|.....|..||..
T Consensus 280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e 356 (423)
T KOG2482|consen 280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVE 356 (423)
T ss_pred eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhccc
Confidence 6899999999999999999998874110 10 11488888889999899888863
No 51
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=95.64 E-value=0.0059 Score=36.40 Aligned_cols=20 Identities=45% Similarity=0.957 Sum_probs=9.3
Q ss_pred ccCccccccCChHHHHhhhh
Q psy15135 850 ICEYCHKEFTFYNYLRRHMR 869 (1000)
Q Consensus 850 ~C~~C~k~f~~~~~L~~H~~ 869 (1000)
.|++|++.|.+...|+.|++
T Consensus 2 ~C~~C~~~f~s~~~~~~H~~ 21 (25)
T PF12874_consen 2 YCDICNKSFSSENSLRQHLR 21 (25)
T ss_dssp EETTTTEEESSHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHC
Confidence 34444444444444444444
No 52
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=95.57 E-value=0.0056 Score=36.49 Aligned_cols=22 Identities=41% Similarity=0.766 Sum_probs=13.2
Q ss_pred ccccchhhhhcChhhHHHHHHh
Q psy15135 14 FTCRICQAVFDKYVRLCGHLRT 35 (1000)
Q Consensus 14 ~~C~~C~~~f~~~~~L~~H~~~ 35 (1000)
|.|++|+++|.+...|..|++.
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHCc
Confidence 4566666666666666666554
No 53
>KOG2785|consensus
Probab=95.55 E-value=0.024 Score=58.06 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=23.4
Q ss_pred CCCCCcccccchhhhccChHHHHHHHHhh
Q psy15135 559 PAGEEAFTCRICQAVFDKYVRLCGHLRTV 587 (1000)
Q Consensus 559 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h 587 (1000)
...+.++.|.+|.+.|.+......|+.+-
T Consensus 63 e~~~~~~~c~~c~k~~~s~~a~~~hl~Sk 91 (390)
T KOG2785|consen 63 EEAESVVYCEACNKSFASPKAHENHLKSK 91 (390)
T ss_pred hhcccceehHHhhccccChhhHHHHHHHh
Confidence 34456789999999999999998888753
No 54
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=95.50 E-value=0.0093 Score=35.09 Aligned_cols=24 Identities=38% Similarity=0.778 Sum_probs=19.8
Q ss_pred cCCcccCcccCChhHHHhHHHHhhC
Q psy15135 758 SLCYHCGYYSKNRSTLKNHVRVEHG 782 (1000)
Q Consensus 758 ~~C~~C~~~f~~~~~l~~H~~~h~~ 782 (1000)
|.|+.|++... ...|..|++.+|+
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H~ 24 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHHP 24 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence 57999999998 9999999999874
No 55
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=95.20 E-value=0.012 Score=35.85 Aligned_cols=21 Identities=38% Similarity=0.874 Sum_probs=10.4
Q ss_pred cccCccccccCChHHHHhhhh
Q psy15135 849 YICEYCHKEFTFYNYLRRHMR 869 (1000)
Q Consensus 849 ~~C~~C~k~f~~~~~L~~H~~ 869 (1000)
|.|.+|++.|.+...|..|++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~ 22 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMK 22 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTT
T ss_pred CCcccCCCCcCCHHHHHHHHc
Confidence 345555555555555555544
No 56
>KOG2482|consensus
Probab=95.15 E-value=0.039 Score=55.07 Aligned_cols=60 Identities=27% Similarity=0.526 Sum_probs=43.4
Q ss_pred CceecCCcCcccc-chhhHHHHHhhhcccccc----------------C--CcccccccCCcccCchHHHHHhhhccCC
Q psy15135 225 VTYNCKFCSMKFT-RVGQMNIHIKTVHLKHML----------------E--KKFVCQYCNKEFPFQGYLNKHMKTHNHH 284 (1000)
Q Consensus 225 ~~y~C~~C~~~f~-~~~~L~~H~~~~H~~h~~----------------~--k~~~C~~C~k~F~~~~~L~~H~~~h~~~ 284 (1000)
..-+|-+|...+. +++....|+..+|.-..| + ..+.|-+|.+.|..+..|..||+...+.
T Consensus 143 fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK~Hr 221 (423)
T KOG2482|consen 143 FSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKKRHR 221 (423)
T ss_pred eeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhccCc
Confidence 3457888887654 577788888777632221 1 1478999999999999999999875443
No 57
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=94.92 E-value=0.015 Score=35.34 Aligned_cols=22 Identities=32% Similarity=0.694 Sum_probs=20.9
Q ss_pred ccCCcCcccccCchhhhhcccc
Q psy15135 877 YKCKDCGAAFNHNVSLKNHKNS 898 (1000)
Q Consensus 877 ~~C~~C~~~f~~~~~L~~H~~~ 898 (1000)
|-|.+|++.|.....|..|+++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 7899999999999999999986
No 58
>KOG4173|consensus
Probab=94.40 E-value=0.04 Score=50.64 Aligned_cols=92 Identities=27% Similarity=0.546 Sum_probs=67.2
Q ss_pred cccccccccc--hhhhhcChhhHHHHHHhhhCCCCCCCCccccchhhcCChHHHHHHHHHhcCCCCCCccccccccchhh
Q psy15135 9 VREEAFTCRI--CQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICS 86 (1000)
Q Consensus 9 ~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~C~~C~ 86 (1000)
..-..|.|++ |..+|.+......|...-|+. .|.+|.+.|.+...|..|+..-|..-
T Consensus 75 ~~~~~~~cqvagc~~~~d~lD~~E~hY~~~h~~------sCs~C~r~~Pt~hLLd~HI~E~HDs~--------------- 133 (253)
T KOG4173|consen 75 PRVPAFACQVAGCCQVFDALDDYEHHYHTLHGN------SCSFCKRAFPTGHLLDAHILEWHDSL--------------- 133 (253)
T ss_pred cccccccccccchHHHHhhhhhHHHhhhhcccc------hhHHHHHhCCchhhhhHHHHHHHHHH---------------
Confidence 3445688988 999999988888887665543 39999999999999999999877310
Q ss_pred hhhhhhhhhhhhcCCCCccCC--cCcccccChHHHHhhhhhhc
Q psy15135 87 ARVVNLAEHKLCHEPPRFTCE--YCVKPFRRTQELRNHVKAVH 127 (1000)
Q Consensus 87 ~~~~~l~~h~~~h~~~~~~C~--~C~~~f~~~~~L~~H~~~~h 127 (1000)
|..+. .-+...|.|- .|+..|.+...-..|+..+|
T Consensus 134 --Fqa~v----eRG~dMy~ClvEgCt~KFkT~r~RkdH~I~~H 170 (253)
T KOG4173|consen 134 --FQALV----ERGQDMYQCLVEGCTEKFKTSRDRKDHMIRMH 170 (253)
T ss_pred --HHHHH----HcCccHHHHHHHhhhhhhhhhhhhhhHHHHhc
Confidence 11110 0113467884 48888888888888887777
No 59
>PRK04860 hypothetical protein; Provisional
Probab=92.86 E-value=0.035 Score=51.18 Aligned_cols=39 Identities=23% Similarity=0.589 Sum_probs=33.6
Q ss_pred cccccchhhhhcChhhHHHHHHhhhCCCCCCCCccccchhhcCChH
Q psy15135 13 AFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRA 58 (1000)
Q Consensus 13 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~~~f~~~~ 58 (1000)
+|.|. |++ ....+.+|.++|.++++|+ |..|+..|....
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~Yr---C~~C~~~l~~~~ 157 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYR---CRRCGETLVFKG 157 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHHHhcCCccEE---CCCCCceeEEec
Confidence 59998 988 6788899999999999988 999999887543
No 60
>KOG4173|consensus
Probab=92.67 E-value=0.099 Score=48.18 Aligned_cols=91 Identities=27% Similarity=0.573 Sum_probs=68.1
Q ss_pred CCcccccc--hhhhccChHHHHHHHHhhcCCCCCCccccccccccccChHHHHHHHHhhcCCCCCccccccccccchhhh
Q psy15135 562 EEAFTCRI--CQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSAR 639 (1000)
Q Consensus 562 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~~~~~C~~c~~~ 639 (1000)
...|.|.+ |...|.....+..|..+-|+. .|..|.+.|.+...|..|+...|..
T Consensus 77 ~~~~~cqvagc~~~~d~lD~~E~hY~~~h~~------sCs~C~r~~Pt~hLLd~HI~E~HDs------------------ 132 (253)
T KOG4173|consen 77 VPAFACQVAGCCQVFDALDDYEHHYHTLHGN------SCSFCKRAFPTGHLLDAHILEWHDS------------------ 132 (253)
T ss_pred cccccccccchHHHHhhhhhHHHhhhhcccc------hhHHHHHhCCchhhhhHHHHHHHHH------------------
Confidence 34578877 889999999999998877765 5999999999999999999877742
Q ss_pred ccchhhhhccCCCCcccc--ccccccccChhHHHHHHHhhcc
Q psy15135 640 VVNLAEHKLCHEPPRFTC--EYCVKPFRRTQELRNHVKAVHL 679 (1000)
Q Consensus 640 ~~~l~~h~~~h~~~~~~C--~~C~~~f~~~~~L~~H~~~~H~ 679 (1000)
+-.-....+...|.| +.|+..|.+...-..|+-..|.
T Consensus 133 ---~Fqa~veRG~dMy~ClvEgCt~KFkT~r~RkdH~I~~Hk 171 (253)
T KOG4173|consen 133 ---LFQALVERGQDMYQCLVEGCTEKFKTSRDRKDHMIRMHK 171 (253)
T ss_pred ---HHHHHHHcCccHHHHHHHhhhhhhhhhhhhhhHHHHhcc
Confidence 000001111334788 5688888888888888877774
No 61
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=91.59 E-value=0.18 Score=29.83 Aligned_cols=19 Identities=32% Similarity=0.915 Sum_probs=10.6
Q ss_pred cccccccccCChHHHHHHHH
Q psy15135 137 RCEVCGKTFGLKEYLRRHMR 156 (1000)
Q Consensus 137 ~C~~C~~~f~~~~~L~~H~~ 156 (1000)
.|+.||+.| ....|..|+.
T Consensus 4 ~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred cCCCCCCEE-CHHHHHHHHH
Confidence 466666666 4555555544
No 62
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=91.32 E-value=0.032 Score=64.02 Aligned_cols=69 Identities=26% Similarity=0.473 Sum_probs=59.2
Q ss_pred CccccccccccccChhHHHHHHHh-hccCCCCC--Cccccc--ccccccccHHHHHHHHhHhcCccceee---ccCCCcc
Q psy15135 653 PRFTCEYCVKPFRRTQELRNHVKA-VHLTETPE--ERPRCE--VCGKTFGLKEYLRRHMRTHRVERKYKC---VCGDGFN 724 (1000)
Q Consensus 653 ~~~~C~~C~~~f~~~~~L~~H~~~-~H~~~~~~--~~~~C~--~C~k~f~~~~~L~~H~~~H~~~k~~~C---~C~~~f~ 724 (1000)
.++.|..|...|.....|..|.+. .| +++ +++.|+ .|++.|.....+..|..+|++..++.+ .+...+.
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRHLRSVNH---SGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFS 364 (467)
T ss_pred cCCCCccccCCcccccccccccccccc---ccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCccccc
Confidence 358999999999999999999985 45 777 899999 899999999999999999999998888 3555444
No 63
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=90.12 E-value=0.19 Score=29.72 Aligned_cols=19 Identities=42% Similarity=0.891 Sum_probs=11.0
Q ss_pred ccCCCCCccccchhhHHHHh
Q psy15135 817 HVCPHCGKKFTRKAELQLHI 836 (1000)
Q Consensus 817 ~~C~~C~~~f~~~~~L~~H~ 836 (1000)
..|+.||+.| ....|..|+
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~ 21 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHE 21 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHH
Confidence 3566666666 455555554
No 64
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=89.88 E-value=0.15 Score=33.40 Aligned_cols=23 Identities=26% Similarity=0.676 Sum_probs=14.7
Q ss_pred cccCCcCcccccCchhhhhcccc
Q psy15135 876 PYKCKDCGAAFNHNVSLKNHKNS 898 (1000)
Q Consensus 876 p~~C~~C~~~f~~~~~L~~H~~~ 898 (1000)
+|.|++|++.|.....+..|++.
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEccccCCccCCHHHHHHHHCh
Confidence 46666666666666666666653
No 65
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=89.67 E-value=0.35 Score=55.28 Aligned_cols=58 Identities=31% Similarity=0.532 Sum_probs=29.8
Q ss_pred ccccCccccccCChHHHHhhhh--hccCC--CcccCC--cCcccccCchhhhhccccCCCCCCC
Q psy15135 848 TYICEYCHKEFTFYNYLRRHMR--VHTNE--KPYKCK--DCGAAFNHNVSLKNHKNSSCPKRDM 905 (1000)
Q Consensus 848 ~~~C~~C~k~f~~~~~L~~H~~--~H~~~--~p~~C~--~C~~~f~~~~~L~~H~~~~~~~~~~ 905 (1000)
++.|..|...|.....|.+|.+ .|+++ +|+.|+ .|++.|.+...|..|...|.+..+.
T Consensus 289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (467)
T COG5048 289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPA 352 (467)
T ss_pred CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCcc
Confidence 4455555555555555555555 45555 555555 4555555555555555555444433
No 66
>KOG2893|consensus
Probab=89.08 E-value=0.14 Score=48.21 Aligned_cols=41 Identities=34% Similarity=0.587 Sum_probs=18.5
Q ss_pred cccccccccChhHHHHHHHhhccCCCCCCcccccccccccccHHHHHHH
Q psy15135 657 CEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRH 705 (1000)
Q Consensus 657 C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~C~~C~k~f~~~~~L~~H 705 (1000)
|-+|++.|.....|..|++..| |+|.+|.|...+--.|..|
T Consensus 13 cwycnrefddekiliqhqkakh--------fkchichkkl~sgpglsih 53 (341)
T KOG2893|consen 13 CWYCNREFDDEKILIQHQKAKH--------FKCHICHKKLFSGPGLSIH 53 (341)
T ss_pred eeecccccchhhhhhhhhhhcc--------ceeeeehhhhccCCCceee
Confidence 4444444444444444444444 4444444444443334333
No 67
>KOG2893|consensus
Probab=89.07 E-value=0.13 Score=48.39 Aligned_cols=45 Identities=36% Similarity=0.622 Sum_probs=27.1
Q ss_pred CCcCcccccChHHHHhhhhhhccCCCCCCCCcccccccccCChHHHHHH-HHHh
Q psy15135 106 CEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRH-MRTH 158 (1000)
Q Consensus 106 C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~C~~C~~~f~~~~~L~~H-~~~H 158 (1000)
|.+|++.|....-|..|++..| |+|.+|.+..-+--.|..| |++|
T Consensus 13 cwycnrefddekiliqhqkakh--------fkchichkkl~sgpglsihcmqvh 58 (341)
T KOG2893|consen 13 CWYCNREFDDEKILIQHQKAKH--------FKCHICHKKLFSGPGLSIHCMQVH 58 (341)
T ss_pred eeecccccchhhhhhhhhhhcc--------ceeeeehhhhccCCCceeehhhhh
Confidence 6666666666666666666666 6666666665555555555 3444
No 68
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=89.00 E-value=0.26 Score=32.21 Aligned_cols=22 Identities=23% Similarity=0.570 Sum_probs=16.1
Q ss_pred ccccCccccccCChHHHHhhhh
Q psy15135 848 TYICEYCHKEFTFYNYLRRHMR 869 (1000)
Q Consensus 848 ~~~C~~C~k~f~~~~~L~~H~~ 869 (1000)
+|.|++|++.|.....+..|+.
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~ 24 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLK 24 (35)
T ss_pred CeEccccCCccCCHHHHHHHHC
Confidence 4677777777777777777765
No 69
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=88.35 E-value=0.22 Score=42.30 Aligned_cols=34 Identities=24% Similarity=0.550 Sum_probs=26.1
Q ss_pred cccccccchhhhhhhhhhhhhhhcCCCCccCCcCcccccCh
Q psy15135 76 VREKEVCEICSARVVNLAEHKLCHEPPRFTCEYCVKPFRRT 116 (1000)
Q Consensus 76 ~~~~~~C~~C~~~~~~l~~h~~~h~~~~~~C~~C~~~f~~~ 116 (1000)
.+.|.+|+.||++|..|. ..|..|++||..|.-.
T Consensus 6 lGtKR~Cp~CG~kFYDLn-------k~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 6 LGTKRTCPSCGAKFYDLN-------KDPIVCPKCGTEFPPE 39 (108)
T ss_pred cCCcccCCCCcchhccCC-------CCCccCCCCCCccCcc
Confidence 456678888998888774 4577888888888765
No 70
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.67 E-value=0.64 Score=39.33 Aligned_cols=80 Identities=19% Similarity=0.319 Sum_probs=54.2
Q ss_pred cccCCCCCccccchhhHHHHhhccccc-----c-----CCCCccccCccccccCChHHHHhhhhhccCCCcccCCcCccc
Q psy15135 816 YHVCPHCGKKFTRKAELQLHIKGIHLK-----H-----QLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAA 885 (1000)
Q Consensus 816 ~~~C~~C~~~f~~~~~L~~H~~~~h~~-----h-----~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~C~~~ 885 (1000)
|..|++||-+......|.+-.. |.. . ...+.-.|--|.+.|........= .-+....|+|+.|...
T Consensus 15 P~~CpiCgLtLVss~HLARSyH--HLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~~--~~~~~~~y~C~~C~~~ 90 (112)
T TIGR00622 15 PVECPICGLTLILSTHLARSYH--HLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPFD--ELKDSHRYVCAVCKNV 90 (112)
T ss_pred CCcCCcCCCEEeccchHHHhhh--ccCCCcccccccccccCCCCcccCcCCCCCCccccccc--ccccccceeCCCCCCc
Confidence 5789999999999999887541 100 0 001112499999999865421100 0122457999999999
Q ss_pred ccCchhhhhccccC
Q psy15135 886 FNHNVSLKNHKNSS 899 (1000)
Q Consensus 886 f~~~~~L~~H~~~~ 899 (1000)
|=-.-++-.|...|
T Consensus 91 FC~dCD~fiHe~Lh 104 (112)
T TIGR00622 91 FCVDCDVFVHESLH 104 (112)
T ss_pred cccccchhhhhhcc
Confidence 99999999998776
No 71
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=86.55 E-value=0.42 Score=33.55 Aligned_cols=28 Identities=29% Similarity=0.535 Sum_probs=13.7
Q ss_pred ccccccccchhhhhcChhhHHHHHHhhh
Q psy15135 10 REEAFTCRICQAVFDKYVRLCGHLRTVH 37 (1000)
Q Consensus 10 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~ 37 (1000)
||.-+.|+-|++.|....++.+|...-|
T Consensus 14 GE~~lrCPRC~~~FR~~K~Y~RHVNKaH 41 (65)
T COG4049 14 GEEFLRCPRCGMVFRRRKDYIRHVNKAH 41 (65)
T ss_pred CceeeeCCchhHHHHHhHHHHHHhhHHh
Confidence 3444555555555555555555544433
No 72
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=86.25 E-value=0.36 Score=30.96 Aligned_cols=10 Identities=50% Similarity=1.241 Sum_probs=4.6
Q ss_pred ccCCCCCccc
Q psy15135 817 HVCPHCGKKF 826 (1000)
Q Consensus 817 ~~C~~C~~~f 826 (1000)
|.|..||..+
T Consensus 2 ~~C~~CGy~y 11 (33)
T cd00350 2 YVCPVCGYIY 11 (33)
T ss_pred EECCCCCCEE
Confidence 4455555433
No 73
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=79.90 E-value=1.2 Score=31.47 Aligned_cols=31 Identities=29% Similarity=0.557 Sum_probs=24.6
Q ss_pred CCCCCcccccchhhhccChHHHHHHHHhhcC
Q psy15135 559 PAGEEAFTCRICQAVFDKYVRLCGHLRTVHN 589 (1000)
Q Consensus 559 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~ 589 (1000)
..||.-+.|+-|++.|.....+.+|....|+
T Consensus 12 RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~ 42 (65)
T COG4049 12 RDGEEFLRCPRCGMVFRRRKDYIRHVNKAHG 42 (65)
T ss_pred cCCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence 5566778888888888888888888877665
No 74
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=78.89 E-value=1.1 Score=26.72 Aligned_cols=11 Identities=55% Similarity=1.488 Sum_probs=8.5
Q ss_pred ccCCCCCcccc
Q psy15135 817 HVCPHCGKKFT 827 (1000)
Q Consensus 817 ~~C~~C~~~f~ 827 (1000)
-.|+.||..|.
T Consensus 15 ~~Cp~CG~~F~ 25 (26)
T PF10571_consen 15 KFCPHCGYDFE 25 (26)
T ss_pred CcCCCCCCCCc
Confidence 47888888885
No 75
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=78.01 E-value=1.1 Score=38.60 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=23.7
Q ss_pred ccccccchhhhhhhhhhhhhhhcCCCCccCCcCcccccChH
Q psy15135 77 REKEVCEICSARVVNLAEHKLCHEPPRFTCEYCVKPFRRTQ 117 (1000)
Q Consensus 77 ~~~~~C~~C~~~~~~l~~h~~~h~~~~~~C~~C~~~f~~~~ 117 (1000)
+.|..|+.||++|..|. ..|..|++||..|.-..
T Consensus 7 GtKr~Cp~cg~kFYDLn-------k~p~vcP~cg~~~~~~~ 40 (129)
T TIGR02300 7 GTKRICPNTGSKFYDLN-------RRPAVSPYTGEQFPPEE 40 (129)
T ss_pred CccccCCCcCccccccC-------CCCccCCCcCCccCcch
Confidence 45567888888887764 45777888887776553
No 76
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=77.55 E-value=1.4 Score=29.37 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=20.6
Q ss_pred ccCCCCCccccchhhHHHHhhccccccCCCCccccCccccccC
Q psy15135 817 HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFT 859 (1000)
Q Consensus 817 ~~C~~C~~~f~~~~~L~~H~~~~h~~h~~~k~~~C~~C~k~f~ 859 (1000)
+.|+.|+..|.-...... .......|+.|+..|.
T Consensus 3 ~~CP~C~~~~~v~~~~~~---------~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLG---------ANGGKVRCGKCGHVWY 36 (38)
T ss_pred EECCCCCCEEEeCHHHcC---------CCCCEEECCCCCCEEE
Confidence 568888887776655321 1122467777777664
No 77
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=77.52 E-value=3.6 Score=35.65 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=21.6
Q ss_pred ccc----cccccccccHHHHHHHHhHhcC
Q psy15135 687 PRC----EVCGKTFGLKEYLRRHMRTHRV 711 (1000)
Q Consensus 687 ~~C----~~C~k~f~~~~~L~~H~~~H~~ 711 (1000)
|.| ..|++.+.+...+++|++.++|
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 789 8999999999999999987764
No 78
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=76.06 E-value=1.9 Score=36.69 Aligned_cols=15 Identities=33% Similarity=0.926 Sum_probs=7.8
Q ss_pred CcccCCcCcccccCc
Q psy15135 875 KPYKCKDCGAAFNHN 889 (1000)
Q Consensus 875 ~p~~C~~C~~~f~~~ 889 (1000)
.|..|+.||..|.-.
T Consensus 25 ~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 25 DPIVCPKCGTEFPPE 39 (108)
T ss_pred CCccCCCCCCccCcc
Confidence 355555555555544
No 79
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=75.61 E-value=1.4 Score=28.48 Aligned_cols=9 Identities=56% Similarity=1.243 Sum_probs=4.1
Q ss_pred ccCCCCCcc
Q psy15135 817 HVCPHCGKK 825 (1000)
Q Consensus 817 ~~C~~C~~~ 825 (1000)
|.|..||..
T Consensus 3 ~~C~~CG~i 11 (34)
T cd00729 3 WVCPVCGYI 11 (34)
T ss_pred EECCCCCCE
Confidence 444444433
No 80
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=74.97 E-value=1.8 Score=31.40 Aligned_cols=12 Identities=33% Similarity=0.825 Sum_probs=7.6
Q ss_pred ccCCCCCccccc
Q psy15135 817 HVCPHCGKKFTR 828 (1000)
Q Consensus 817 ~~C~~C~~~f~~ 828 (1000)
|.|+.||..--.
T Consensus 28 F~CPnCGe~~I~ 39 (61)
T COG2888 28 FPCPNCGEVEIY 39 (61)
T ss_pred eeCCCCCceeee
Confidence 777777755443
No 81
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=74.94 E-value=2 Score=37.19 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=17.5
Q ss_pred cccc----cchhhhccChHHHHHHHHhhcC
Q psy15135 564 AFTC----RICQAVFDKYVRLCGHLRTVHN 589 (1000)
Q Consensus 564 ~~~C----~~C~~~f~~~~~l~~H~~~h~~ 589 (1000)
.|.| ..|++.+.+...+..|++.+||
T Consensus 80 G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 80 GYRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred CeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 4667 6677777777777777766654
No 82
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=73.35 E-value=2.2 Score=28.23 Aligned_cols=34 Identities=21% Similarity=0.502 Sum_probs=21.9
Q ss_pred ccCCCCCccccchhhHHHHhhccccccCCCCccccCccccccC
Q psy15135 817 HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFT 859 (1000)
Q Consensus 817 ~~C~~C~~~f~~~~~L~~H~~~~h~~h~~~k~~~C~~C~k~f~ 859 (1000)
..|+.|+..|.-..+- +-.+.+..+|+.|+..|.
T Consensus 3 i~CP~C~~~f~v~~~~---------l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDK---------LPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHH---------cccCCcEEECCCCCcEee
Confidence 4688888888766552 223345677888877664
No 83
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=72.17 E-value=2.7 Score=27.58 Aligned_cols=33 Identities=24% Similarity=0.547 Sum_probs=21.0
Q ss_pred ccCCCCCccccchhhHHHHhhccccccCCCCccccCcccccc
Q psy15135 817 HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEF 858 (1000)
Q Consensus 817 ~~C~~C~~~f~~~~~L~~H~~~~h~~h~~~k~~~C~~C~k~f 858 (1000)
+.|+.|+..|.-.... +-...+..+|+.|+..|
T Consensus 3 i~Cp~C~~~y~i~d~~---------ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEK---------IPPKGRKVRCSKCGHVF 35 (36)
T ss_pred EECCCCCCEEeCCHHH---------CCCCCcEEECCCCCCEe
Confidence 5677888777766653 22223456777777766
No 84
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=71.09 E-value=0.7 Score=45.59 Aligned_cols=25 Identities=24% Similarity=0.578 Sum_probs=15.3
Q ss_pred cccccccchhhhhcChhhHHHHHHh
Q psy15135 11 EEAFTCRICQAVFDKYVRLCGHLRT 35 (1000)
Q Consensus 11 ~~~~~C~~C~~~f~~~~~L~~H~~~ 35 (1000)
++.++|++|++.|.+..-+....+.
T Consensus 3 ~k~~~CPvC~~~F~~~~vrs~~~r~ 27 (214)
T PF09986_consen 3 DKKITCPVCGKEFKTKKVRSGKIRV 27 (214)
T ss_pred CCceECCCCCCeeeeeEEEcCCceE
Confidence 4556777777777766555555443
No 85
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=66.71 E-value=1.9 Score=42.59 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=14.6
Q ss_pred CCCccCCcCcccccChHHHHhhh
Q psy15135 101 PPRFTCEYCVKPFRRTQELRNHV 123 (1000)
Q Consensus 101 ~~~~~C~~C~~~f~~~~~L~~H~ 123 (1000)
++.++||+|++.|.+..-+....
T Consensus 3 ~k~~~CPvC~~~F~~~~vrs~~~ 25 (214)
T PF09986_consen 3 DKKITCPVCGKEFKTKKVRSGKI 25 (214)
T ss_pred CCceECCCCCCeeeeeEEEcCCc
Confidence 34567777777777765544444
No 86
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.57 E-value=6.9 Score=33.34 Aligned_cols=90 Identities=21% Similarity=0.349 Sum_probs=56.3
Q ss_pred ccccchhhhccchhhhhccCCCCccccccccccccChhHHHHHHHhhccCCC----------CCCcccccccccccccHH
Q psy15135 631 EVCEICSARVVNLAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTET----------PEERPRCEVCGKTFGLKE 700 (1000)
Q Consensus 631 ~~C~~c~~~~~~l~~h~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~----------~~~~~~C~~C~k~f~~~~ 700 (1000)
|.|+.|+...-+ -|-.|++|+........|.+-. +|+... ....-.|--|...|....
T Consensus 2 Y~CPrC~skvC~----------LP~~CpiCgLtLVss~HLARSy--HHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~ 69 (112)
T TIGR00622 2 YFCPQCRAKVCE----------LPVECPICGLTLILSTHLARSY--HHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPP 69 (112)
T ss_pred ccCCCCCCCccC----------CCCcCCcCCCEEeccchHHHhh--hccCCCcccccccccccCCCCcccCcCCCCCCcc
Confidence 456666655433 3578999999999999888765 342111 011124889999887643
Q ss_pred HHHHHHhHhcCccceee-ccCCCccchhhHHHHHH
Q psy15135 701 YLRRHMRTHRVERKYKC-VCGDGFNFNVSLKVHMA 734 (1000)
Q Consensus 701 ~L~~H~~~H~~~k~~~C-~C~~~f~~~~~l~~H~~ 734 (1000)
.... ..-.....|.| .|...|-..-++..|..
T Consensus 70 ~~~~--~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 102 (112)
T TIGR00622 70 VSPF--DELKDSHRYVCAVCKNVFCVDCDVFVHES 102 (112)
T ss_pred cccc--cccccccceeCCCCCCccccccchhhhhh
Confidence 1110 00122346999 79999988888888843
No 87
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=64.33 E-value=4.6 Score=29.53 Aligned_cols=9 Identities=44% Similarity=1.464 Sum_probs=6.5
Q ss_pred ccCCCCCcc
Q psy15135 817 HVCPHCGKK 825 (1000)
Q Consensus 817 ~~C~~C~~~ 825 (1000)
|.|+.||..
T Consensus 26 F~CPnCG~~ 34 (59)
T PRK14890 26 FLCPNCGEV 34 (59)
T ss_pred eeCCCCCCe
Confidence 777777765
No 88
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=63.95 E-value=5.3 Score=34.53 Aligned_cols=15 Identities=20% Similarity=0.333 Sum_probs=7.2
Q ss_pred CcccCCcCcccccCc
Q psy15135 875 KPYKCKDCGAAFNHN 889 (1000)
Q Consensus 875 ~p~~C~~C~~~f~~~ 889 (1000)
.|..|+.||..|.-.
T Consensus 25 ~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 25 RPAVSPYTGEQFPPE 39 (129)
T ss_pred CCccCCCcCCccCcc
Confidence 344555555554433
No 89
>PF15269 zf-C2H2_7: Zinc-finger
Probab=60.90 E-value=6.5 Score=26.38 Aligned_cols=27 Identities=33% Similarity=0.524 Sum_probs=21.8
Q ss_pred CCCCCCCccccchhhcCChHHHHHHHHH
Q psy15135 39 EKPEKSNLCFVCAKVFATRATLTLHIKQ 66 (1000)
Q Consensus 39 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~ 66 (1000)
.+||+ +.|..|......++.|-.||+.
T Consensus 16 gkp~~-ykcfqcpftc~~kshl~nhmky 42 (54)
T PF15269_consen 16 GKPFK-YKCFQCPFTCNEKSHLFNHMKY 42 (54)
T ss_pred CCCcc-ceeecCCcccchHHHHHHHHHH
Confidence 45664 6799999999999999999973
No 90
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=60.13 E-value=3 Score=29.04 Aligned_cols=22 Identities=36% Similarity=0.831 Sum_probs=8.3
Q ss_pred CccccCccccccCCh----HHHHhhh
Q psy15135 847 KTYICEYCHKEFTFY----NYLRRHM 868 (1000)
Q Consensus 847 k~~~C~~C~k~f~~~----~~L~~H~ 868 (1000)
...+|.+|++.+... +.|.+|+
T Consensus 15 ~~a~C~~C~~~~~~~~~~ts~l~~HL 40 (45)
T PF02892_consen 15 KKAKCKYCGKVIKYSSGGTSNLKRHL 40 (45)
T ss_dssp S-EEETTTTEE-----SSTHHHHHHH
T ss_pred CeEEeCCCCeEEeeCCCcHHHHHHhh
Confidence 334455555544442 4444444
No 91
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=59.34 E-value=5.2 Score=36.84 Aligned_cols=34 Identities=32% Similarity=0.717 Sum_probs=17.4
Q ss_pred ccCCCCCccccchhhHHHHhhccccccCCCCccccCcccccc
Q psy15135 817 HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEF 858 (1000)
Q Consensus 817 ~~C~~C~~~f~~~~~L~~H~~~~h~~h~~~k~~~C~~C~k~f 858 (1000)
|.|+.|+..|.....+.. . .. +..|.|+.||...
T Consensus 100 Y~Cp~C~~~y~~~ea~~~-~------d~-~~~f~Cp~Cg~~l 133 (147)
T smart00531 100 YKCPNCQSKYTFLEANQL-L------DM-DGTFTCPRCGEEL 133 (147)
T ss_pred EECcCCCCEeeHHHHHHh-c------CC-CCcEECCCCCCEE
Confidence 667777766665433322 0 11 2336666666543
No 92
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=58.84 E-value=5.5 Score=36.90 Aligned_cols=11 Identities=45% Similarity=0.969 Sum_probs=5.8
Q ss_pred CCCcccCCcCc
Q psy15135 873 NEKPYKCKDCG 883 (1000)
Q Consensus 873 ~~~p~~C~~C~ 883 (1000)
|+-|-+|++||
T Consensus 146 ge~P~~CPiCg 156 (166)
T COG1592 146 GEAPEVCPICG 156 (166)
T ss_pred CCCCCcCCCCC
Confidence 44455555555
No 93
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=58.12 E-value=5.8 Score=27.43 Aligned_cols=11 Identities=45% Similarity=0.999 Sum_probs=5.2
Q ss_pred cccCccccccC
Q psy15135 849 YICEYCHKEFT 859 (1000)
Q Consensus 849 ~~C~~C~k~f~ 859 (1000)
|.|..||..|.
T Consensus 3 Y~C~~Cg~~~~ 13 (44)
T smart00659 3 YICGECGRENE 13 (44)
T ss_pred EECCCCCCEee
Confidence 44444544443
No 94
>PF15269 zf-C2H2_7: Zinc-finger
Probab=57.80 E-value=7.2 Score=26.19 Aligned_cols=23 Identities=30% Similarity=0.402 Sum_probs=19.6
Q ss_pred CCcccccccccCChHHHHHHHHH
Q psy15135 135 RPRCEVCGKTFGLKEYLRRHMRT 157 (1000)
Q Consensus 135 ~~~C~~C~~~f~~~~~L~~H~~~ 157 (1000)
.|+|-.|..+...++.|-.||+.
T Consensus 20 ~ykcfqcpftc~~kshl~nhmky 42 (54)
T PF15269_consen 20 KYKCFQCPFTCNEKSHLFNHMKY 42 (54)
T ss_pred cceeecCCcccchHHHHHHHHHH
Confidence 36899999999999999999874
No 95
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=57.11 E-value=5 Score=28.76 Aligned_cols=10 Identities=40% Similarity=1.212 Sum_probs=4.8
Q ss_pred ccCccccccC
Q psy15135 850 ICEYCHKEFT 859 (1000)
Q Consensus 850 ~C~~C~k~f~ 859 (1000)
.|.+|++.++
T Consensus 20 ~C~~C~~~l~ 29 (50)
T smart00614 20 KCKYCGKKLS 29 (50)
T ss_pred EecCCCCEee
Confidence 3555555443
No 96
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=56.22 E-value=7.2 Score=27.36 Aligned_cols=11 Identities=27% Similarity=0.924 Sum_probs=6.2
Q ss_pred ccCCCCCcccc
Q psy15135 817 HVCPHCGKKFT 827 (1000)
Q Consensus 817 ~~C~~C~~~f~ 827 (1000)
|.|+.||..|.
T Consensus 4 y~C~~CG~~~~ 14 (46)
T PRK00398 4 YKCARCGREVE 14 (46)
T ss_pred EECCCCCCEEE
Confidence 55555555554
No 97
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=56.11 E-value=9.4 Score=45.01 Aligned_cols=40 Identities=30% Similarity=0.835 Sum_probs=29.8
Q ss_pred ccCCCCCccccchhhHHHHhhccccccCCCCccccCccccccCChHHHHhhhhhccCCCcccCCcCccc
Q psy15135 817 HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAA 885 (1000)
Q Consensus 817 ~~C~~C~~~f~~~~~L~~H~~~~h~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~C~~~ 885 (1000)
++|+.|+-..+ .|...+...|.+||.. ...|..|+.||-.
T Consensus 445 ~~Cp~Cd~~lt--------------~H~~~~~L~CH~Cg~~---------------~~~p~~Cp~Cgs~ 484 (730)
T COG1198 445 AECPNCDSPLT--------------LHKATGQLRCHYCGYQ---------------EPIPQSCPECGSE 484 (730)
T ss_pred ccCCCCCcceE--------------EecCCCeeEeCCCCCC---------------CCCCCCCCCCCCC
Confidence 68888887753 3444577899999863 3578999999976
No 98
>PHA00626 hypothetical protein
Probab=56.11 E-value=7.1 Score=27.96 Aligned_cols=10 Identities=30% Similarity=0.700 Sum_probs=3.9
Q ss_pred cccCcccccc
Q psy15135 849 YICEYCHKEF 858 (1000)
Q Consensus 849 ~~C~~C~k~f 858 (1000)
|+|+.||..|
T Consensus 24 YkCkdCGY~f 33 (59)
T PHA00626 24 YVCCDCGYND 33 (59)
T ss_pred eEcCCCCCee
Confidence 3333333333
No 99
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=53.00 E-value=11 Score=34.64 Aligned_cols=39 Identities=23% Similarity=0.641 Sum_probs=26.9
Q ss_pred CCCCccccCccccccCChHHHHh-hhhhccCCCcccCCcCccccc
Q psy15135 844 QLEKTYICEYCHKEFTFYNYLRR-HMRVHTNEKPYKCKDCGAAFN 887 (1000)
Q Consensus 844 ~~~k~~~C~~C~k~f~~~~~L~~-H~~~H~~~~p~~C~~C~~~f~ 887 (1000)
....-|.|+.|+..|+....+.. .+ + .-|.|+.||....
T Consensus 95 ~~~~~Y~Cp~C~~~y~~~ea~~~~d~---~--~~f~Cp~Cg~~l~ 134 (147)
T smart00531 95 TNNAYYKCPNCQSKYTFLEANQLLDM---D--GTFTCPRCGEELE 134 (147)
T ss_pred cCCcEEECcCCCCEeeHHHHHHhcCC---C--CcEECCCCCCEEE
Confidence 34556899999999887665543 21 2 3399999998754
No 100
>KOG4124|consensus
Probab=52.35 E-value=4.8 Score=41.01 Aligned_cols=25 Identities=32% Similarity=0.800 Sum_probs=19.7
Q ss_pred CCcccCCcCcccccCchhhhhcccc
Q psy15135 874 EKPYKCKDCGAAFNHNVSLKNHKNS 898 (1000)
Q Consensus 874 ~~p~~C~~C~~~f~~~~~L~~H~~~ 898 (1000)
.|||.|++|.+++.--..|.-|+..
T Consensus 396 nk~~r~~i~~~~~k~~~~l~~~~~~ 420 (442)
T KOG4124|consen 396 NKPYRCEVCSKRYKNLNGLKYHRTH 420 (442)
T ss_pred cCcccChhhhhhhccCCCCCceeeh
Confidence 5889999999998877777776543
No 101
>KOG2186|consensus
Probab=52.14 E-value=7.8 Score=37.83 Aligned_cols=19 Identities=42% Similarity=0.864 Sum_probs=10.0
Q ss_pred cccccccccccChhHHHHHH
Q psy15135 655 FTCEYCVKPFRRTQELRNHV 674 (1000)
Q Consensus 655 ~~C~~C~~~f~~~~~L~~H~ 674 (1000)
|.|..|++.|.. .....|.
T Consensus 30 fSCIDC~k~F~~-~sYknH~ 48 (276)
T KOG2186|consen 30 FSCIDCGKTFER-VSYKNHT 48 (276)
T ss_pred eEEeeccccccc-chhhhhh
Confidence 555555555555 4444454
No 102
>KOG1280|consensus
Probab=50.72 E-value=56 Score=33.88 Aligned_cols=38 Identities=24% Similarity=0.526 Sum_probs=27.8
Q ss_pred cccCCCCCccccchhhHHHHhhccccccCCCCccccCccc
Q psy15135 816 YHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCH 855 (1000)
Q Consensus 816 ~~~C~~C~~~f~~~~~L~~H~~~~h~~h~~~k~~~C~~C~ 855 (1000)
.|.|++|++.=.+...|..|+.++|..-. ---.|++|+
T Consensus 79 SftCPyC~~~Gfte~~f~~Hv~s~Hpda~--~~~icp~c~ 116 (381)
T KOG1280|consen 79 SFTCPYCGIMGFTERQFGTHVLSQHPEAS--TSVICPLCA 116 (381)
T ss_pred cccCCcccccccchhHHHHHhhhcCcccC--cceeeeccc
Confidence 39999999998899999999986654322 224566664
No 103
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=50.43 E-value=14 Score=22.23 Aligned_cols=19 Identities=21% Similarity=0.634 Sum_probs=11.2
Q ss_pred cccccccccCChHHHHHHHH
Q psy15135 137 RCEVCGKTFGLKEYLRRHMR 156 (1000)
Q Consensus 137 ~C~~C~~~f~~~~~L~~H~~ 156 (1000)
.|++|++.+ ....++.|+.
T Consensus 3 ~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 3 QCPVCFREV-PENLINSHLD 21 (26)
T ss_pred cCCCCcCcc-cHHHHHHHHH
Confidence 466666666 4455666653
No 104
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=50.23 E-value=9.7 Score=30.37 Aligned_cols=15 Identities=20% Similarity=0.518 Sum_probs=9.6
Q ss_pred CCccccCccccccCC
Q psy15135 846 EKTYICEYCHKEFTF 860 (1000)
Q Consensus 846 ~k~~~C~~C~k~f~~ 860 (1000)
..-+.|..||..|.-
T Consensus 51 ~GIW~C~kCg~~fAG 65 (89)
T COG1997 51 TGIWKCRKCGAKFAG 65 (89)
T ss_pred cCeEEcCCCCCeecc
Confidence 345777777777654
No 105
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=49.77 E-value=10 Score=35.23 Aligned_cols=25 Identities=36% Similarity=0.842 Sum_probs=20.0
Q ss_pred CcccCCCCCccccchhhHHHHhhccccccCCCCccccCcccc
Q psy15135 815 QYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHK 856 (1000)
Q Consensus 815 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~h~~~k~~~C~~C~k 856 (1000)
+.|.|++||.+ +.|+-|-+|++||.
T Consensus 133 ~~~vC~vCGy~-----------------~~ge~P~~CPiCga 157 (166)
T COG1592 133 KVWVCPVCGYT-----------------HEGEAPEVCPICGA 157 (166)
T ss_pred CEEEcCCCCCc-----------------ccCCCCCcCCCCCC
Confidence 35999999854 45588999999983
No 106
>KOG2186|consensus
Probab=49.27 E-value=8.4 Score=37.65 Aligned_cols=46 Identities=33% Similarity=0.717 Sum_probs=30.8
Q ss_pred cccCccccccCChHHHHhhhhhccCCCcccCCcCcccccCchhhhhccc
Q psy15135 849 YICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKN 897 (1000)
Q Consensus 849 ~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~C~~~f~~~~~L~~H~~ 897 (1000)
|.|.+||.+-.. ..|.+||-.-+| .-|.|-.||+.|.+ .+...|..
T Consensus 4 FtCnvCgEsvKK-p~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 4 FTCNVCGESVKK-PQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTK 49 (276)
T ss_pred Eehhhhhhhccc-cchHHHHHhccC-CeeEEeeccccccc-chhhhhhh
Confidence 667777766543 345667766666 45777778887777 66677754
No 107
>KOG4167|consensus
Probab=48.84 E-value=6.8 Score=44.37 Aligned_cols=26 Identities=35% Similarity=0.574 Sum_probs=23.8
Q ss_pred ccccccchhhhhcChhhHHHHHHhhh
Q psy15135 12 EAFTCRICQAVFDKYVRLCGHLRTVH 37 (1000)
Q Consensus 12 ~~~~C~~C~~~f~~~~~L~~H~~~h~ 37 (1000)
.-|.|.+|+|+|.....+..||++|-
T Consensus 791 giFpCreC~kvF~KiKSrNAHMK~Hr 816 (907)
T KOG4167|consen 791 GIFPCRECGKVFFKIKSRNAHMKTHR 816 (907)
T ss_pred ceeehHHHHHHHHHHhhhhHHHHHHH
Confidence 45999999999999999999999985
No 108
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.26 E-value=8.5 Score=31.82 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=20.6
Q ss_pred ccccccchhhhhhhhhhhhhhhcCCCCccCCcCccccc
Q psy15135 77 REKEVCEICSARVVNLAEHKLCHEPPRFTCEYCVKPFR 114 (1000)
Q Consensus 77 ~~~~~C~~C~~~~~~l~~h~~~h~~~~~~C~~C~~~f~ 114 (1000)
+.+..|+.|++.|..|. ..|..|++||++|.
T Consensus 7 GtKridPetg~KFYDLN-------rdPiVsPytG~s~P 37 (129)
T COG4530 7 GTKRIDPETGKKFYDLN-------RDPIVSPYTGKSYP 37 (129)
T ss_pred cccccCccccchhhccC-------CCccccCcccccch
Confidence 34556777777777663 45677777777774
No 109
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=46.91 E-value=10 Score=35.37 Aligned_cols=16 Identities=25% Similarity=0.652 Sum_probs=9.0
Q ss_pred ccCCCCCccccchhhH
Q psy15135 817 HVCPHCGKKFTRKAEL 832 (1000)
Q Consensus 817 ~~C~~C~~~f~~~~~L 832 (1000)
|.|+.|+..|+...++
T Consensus 110 Y~Cp~c~~r~tf~eA~ 125 (158)
T TIGR00373 110 FICPNMCVRFTFNEAM 125 (158)
T ss_pred EECCCCCcEeeHHHHH
Confidence 5566666555555544
No 110
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=46.71 E-value=15 Score=35.93 Aligned_cols=43 Identities=26% Similarity=0.554 Sum_probs=22.5
Q ss_pred cCCCCceecCCcCccccchhhHHHHHhhhccccccCCcccccccCC
Q psy15135 221 AHSGVTYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNK 266 (1000)
Q Consensus 221 ~~~~~~y~C~~C~~~f~~~~~L~~H~~~~H~~h~~~k~~~C~~C~k 266 (1000)
.|+++.|+|.+|... .-...--.|+...- -.....|+|..|++
T Consensus 137 ~hGGrif~CsfC~~f-lCEDDQFEHQAsCQ--vLe~E~~KC~SCNr 179 (314)
T PF06524_consen 137 DHGGRIFKCSFCDNF-LCEDDQFEHQASCQ--VLESETFKCQSCNR 179 (314)
T ss_pred cCCCeEEEeecCCCe-eeccchhhhhhhhh--hhhccccccccccc
Confidence 677788888888643 22222233433211 11234577777764
No 111
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=46.25 E-value=10 Score=33.75 Aligned_cols=27 Identities=33% Similarity=0.520 Sum_probs=9.6
Q ss_pred cccccccchhhhhcChhhHHHHHHhhhCCC
Q psy15135 11 EEAFTCRICQAVFDKYVRLCGHLRTVHNEK 40 (1000)
Q Consensus 11 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~ 40 (1000)
++--.|-+||+.|.. |++|++.|||..
T Consensus 70 ~d~i~clecGk~~k~---LkrHL~~~~glt 96 (132)
T PF05443_consen 70 PDYIICLECGKKFKT---LKRHLRTHHGLT 96 (132)
T ss_dssp SS-EE-TBT--EESB---HHHHHHHTT-S-
T ss_pred cCeeEEccCCcccch---HHHHHHHccCCC
Confidence 333445555555432 245555554443
No 112
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=44.89 E-value=10 Score=36.04 Aligned_cols=14 Identities=36% Similarity=0.899 Sum_probs=7.1
Q ss_pred ccCCCCCccccchh
Q psy15135 817 HVCPHCGKKFTRKA 830 (1000)
Q Consensus 817 ~~C~~C~~~f~~~~ 830 (1000)
|.|+.|+..|+...
T Consensus 118 Y~Cp~C~~rytf~e 131 (178)
T PRK06266 118 FFCPNCHIRFTFDE 131 (178)
T ss_pred EECCCCCcEEeHHH
Confidence 55555555554443
No 113
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=44.84 E-value=12 Score=23.81 Aligned_cols=9 Identities=44% Similarity=1.497 Sum_probs=3.6
Q ss_pred cccCCcCcc
Q psy15135 876 PYKCKDCGA 884 (1000)
Q Consensus 876 p~~C~~C~~ 884 (1000)
+.+|+.||.
T Consensus 17 ~irC~~CG~ 25 (32)
T PF03604_consen 17 PIRCPECGH 25 (32)
T ss_dssp TSSBSSSS-
T ss_pred cEECCcCCC
Confidence 344444443
No 114
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=44.39 E-value=11 Score=26.59 Aligned_cols=10 Identities=40% Similarity=1.062 Sum_probs=4.7
Q ss_pred cccCcccccc
Q psy15135 849 YICEYCHKEF 858 (1000)
Q Consensus 849 ~~C~~C~k~f 858 (1000)
|+|..||+.|
T Consensus 7 Y~C~~Cg~~~ 16 (49)
T COG1996 7 YKCARCGREV 16 (49)
T ss_pred EEhhhcCCee
Confidence 4444444444
No 115
>KOG2071|consensus
Probab=43.85 E-value=16 Score=41.02 Aligned_cols=25 Identities=24% Similarity=0.557 Sum_probs=20.8
Q ss_pred CCCcccCCCCCccccchhhHHHHhh
Q psy15135 813 SGQYHVCPHCGKKFTRKAELQLHIK 837 (1000)
Q Consensus 813 ~~~~~~C~~C~~~f~~~~~L~~H~~ 837 (1000)
...+.+|..||..|........||.
T Consensus 415 ~~~pnqC~~CG~R~~~~ee~sk~md 439 (579)
T KOG2071|consen 415 KDSPNQCKSCGLRFDDSEERSKHMD 439 (579)
T ss_pred cCCcchhcccccccccchhhhhHhh
Confidence 3456899999999999999888874
No 116
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=43.49 E-value=7.3 Score=35.81 Aligned_cols=13 Identities=31% Similarity=0.524 Sum_probs=6.6
Q ss_pred ccccccCCcccCc
Q psy15135 259 FVCQYCNKEFPFQ 271 (1000)
Q Consensus 259 ~~C~~C~k~F~~~ 271 (1000)
++|+.||++|.+.
T Consensus 29 ~~c~~c~~~f~~~ 41 (154)
T PRK00464 29 RECLACGKRFTTF 41 (154)
T ss_pred eeccccCCcceEe
Confidence 4555555555443
No 117
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=43.28 E-value=6.8 Score=26.52 Aligned_cols=12 Identities=33% Similarity=0.858 Sum_probs=7.6
Q ss_pred ccCCCCCccccc
Q psy15135 817 HVCPHCGKKFTR 828 (1000)
Q Consensus 817 ~~C~~C~~~f~~ 828 (1000)
|.|+.||..|..
T Consensus 6 y~C~~Cg~~fe~ 17 (41)
T smart00834 6 YRCEDCGHTFEV 17 (41)
T ss_pred EEcCCCCCEEEE
Confidence 666666666653
No 118
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=42.83 E-value=11 Score=22.11 Aligned_cols=9 Identities=44% Similarity=1.113 Sum_probs=6.1
Q ss_pred cccCCCCCc
Q psy15135 816 YHVCPHCGK 824 (1000)
Q Consensus 816 ~~~C~~C~~ 824 (1000)
.|.|+.||+
T Consensus 16 ~f~CPnCG~ 24 (24)
T PF07754_consen 16 PFPCPNCGF 24 (24)
T ss_pred eEeCCCCCC
Confidence 377777774
No 119
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=42.61 E-value=7.2 Score=28.20 Aligned_cols=10 Identities=40% Similarity=1.165 Sum_probs=3.9
Q ss_pred ccCCCCCccc
Q psy15135 817 HVCPHCGKKF 826 (1000)
Q Consensus 817 ~~C~~C~~~f 826 (1000)
|.|..||..|
T Consensus 6 y~C~~Cg~~f 15 (52)
T TIGR02605 6 YRCTACGHRF 15 (52)
T ss_pred EEeCCCCCEe
Confidence 3333333333
No 120
>KOG2807|consensus
Probab=42.37 E-value=26 Score=35.78 Aligned_cols=36 Identities=22% Similarity=0.486 Sum_probs=25.8
Q ss_pred ccccccchhhhhhhhhhhhhhhcCCCCccCCcCcccccChHHHHhh
Q psy15135 77 REKEVCEICSARVVNLAEHKLCHEPPRFTCEYCVKPFRRTQELRNH 122 (1000)
Q Consensus 77 ~~~~~C~~C~~~~~~l~~h~~~h~~~~~~C~~C~~~f~~~~~L~~H 122 (1000)
+..+.|+.|.+..-+| |..|+.|+-+......|.+=
T Consensus 274 ~~Gy~CP~CkakvCsL----------P~eCpiC~ltLVss~hLARS 309 (378)
T KOG2807|consen 274 GGGYFCPQCKAKVCSL----------PIECPICSLTLVSSPHLARS 309 (378)
T ss_pred cCceeCCcccCeeecC----------CccCCccceeEecchHHHHH
Confidence 3445788887655444 77899999888888877654
No 121
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=41.21 E-value=8.3 Score=30.00 Aligned_cols=41 Identities=22% Similarity=0.390 Sum_probs=21.8
Q ss_pred cccCccccccCChHHHHhhhhhccCCCcccCC--cCcccccCchh
Q psy15135 849 YICEYCHKEFTFYNYLRRHMRVHTNEKPYKCK--DCGAAFNHNVS 891 (1000)
Q Consensus 849 ~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~--~C~~~f~~~~~ 891 (1000)
+.|+.||........-...-. +-++-++|. .||.+|.....
T Consensus 2 m~CP~Cg~~a~irtSr~~s~~--~~~~Y~qC~N~eCg~tF~t~es 44 (72)
T PRK09678 2 FHCPLCQHAAHARTSRYITDT--TKERYHQCQNVNCSATFITYES 44 (72)
T ss_pred ccCCCCCCccEEEEChhcChh--hheeeeecCCCCCCCEEEEEEE
Confidence 456666654433222222211 345667787 78888876544
No 122
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.81 E-value=16 Score=30.36 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=16.9
Q ss_pred ccCCCCCccccchhhHHHHhhccccccCCCCccccCcccccc
Q psy15135 817 HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEF 858 (1000)
Q Consensus 817 ~~C~~C~~~f~~~~~L~~H~~~~h~~h~~~k~~~C~~C~k~f 858 (1000)
-.|+.||+.|... ...|-.|++||++|
T Consensus 10 ridPetg~KFYDL---------------NrdPiVsPytG~s~ 36 (129)
T COG4530 10 RIDPETGKKFYDL---------------NRDPIVSPYTGKSY 36 (129)
T ss_pred ccCccccchhhcc---------------CCCccccCcccccc
Confidence 3567777777421 13567777777777
No 123
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=38.51 E-value=15 Score=25.11 Aligned_cols=13 Identities=31% Similarity=0.907 Sum_probs=7.8
Q ss_pred eecCCcCccccch
Q psy15135 227 YNCKFCSMKFTRV 239 (1000)
Q Consensus 227 y~C~~C~~~f~~~ 239 (1000)
|+|..||..|...
T Consensus 6 y~C~~Cg~~fe~~ 18 (42)
T PF09723_consen 6 YRCEECGHEFEVL 18 (42)
T ss_pred EEeCCCCCEEEEE
Confidence 5666666666544
No 124
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=37.73 E-value=20 Score=32.96 Aligned_cols=19 Identities=21% Similarity=0.607 Sum_probs=14.9
Q ss_pred ceecCCcCccccchhhHHH
Q psy15135 226 TYNCKFCSMKFTRVGQMNI 244 (1000)
Q Consensus 226 ~y~C~~C~~~f~~~~~L~~ 244 (1000)
.|+|+.||++|.+...+..
T Consensus 28 ~~~c~~c~~~f~~~e~~~~ 46 (154)
T PRK00464 28 RRECLACGKRFTTFERVEL 46 (154)
T ss_pred eeeccccCCcceEeEeccC
Confidence 4899999999988665433
No 125
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=37.07 E-value=55 Score=33.76 Aligned_cols=26 Identities=27% Similarity=0.561 Sum_probs=16.4
Q ss_pred cccCCcccCcccc-ccCCChHHHHHHH
Q psy15135 462 HQLEQRFVCQYCN-KDFPFMKYLKRHL 487 (1000)
Q Consensus 462 ~~~~~~~~C~~C~-~~f~~~~~L~~H~ 487 (1000)
|...+.|.|.+|+ +++..+..+.+|.
T Consensus 369 hgLd~ef~CEICgNyvy~GR~~FdrHF 395 (470)
T COG5188 369 HGLDIEFECEICGNYVYYGRDRFDRHF 395 (470)
T ss_pred cCCCcceeeeecccccccchHHHHhhh
Confidence 4445567777776 6666666666664
No 126
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=36.54 E-value=11 Score=29.27 Aligned_cols=39 Identities=21% Similarity=0.457 Sum_probs=19.5
Q ss_pred ccCCCCCccccchhhHHHHhhccccccCCCCccccC--ccccccCCh
Q psy15135 817 HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICE--YCHKEFTFY 861 (1000)
Q Consensus 817 ~~C~~C~~~f~~~~~L~~H~~~~h~~h~~~k~~~C~--~C~k~f~~~ 861 (1000)
+.|+.||........-...- -..++-++|. .||.+|+..
T Consensus 2 m~CP~Cg~~a~irtSr~~s~------~~~~~Y~qC~N~eCg~tF~t~ 42 (72)
T PRK09678 2 FHCPLCQHAAHARTSRYITD------TTKERYHQCQNVNCSATFITY 42 (72)
T ss_pred ccCCCCCCccEEEEChhcCh------hhheeeeecCCCCCCCEEEEE
Confidence 35666665553333322221 1334556676 677777543
No 127
>KOG1280|consensus
Probab=36.51 E-value=30 Score=35.74 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=44.7
Q ss_pred CCCccccchhhcCChHHHHHHHHHhcCCCCCCccccccccchhhhhhhhhhhhhhhcCCCCccCCcCcccccChHHHHhh
Q psy15135 43 KSNLCFVCAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVVNLAEHKLCHEPPRFTCEYCVKPFRRTQELRNH 122 (1000)
Q Consensus 43 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~~~~C~~C~~~~~~l~~h~~~h~~~~~~C~~C~~~f~~~~~L~~H 122 (1000)
+.|.|++|++.=-+...|..|+...|.... ....|+.|+ .-++.|+.|.+.-.+...++.|
T Consensus 78 qSftCPyC~~~Gfte~~f~~Hv~s~Hpda~-----~~~icp~c~--------------~~~~~qp~~~~~~~~~~~~~~~ 138 (381)
T KOG1280|consen 78 QSFTCPYCGIMGFTERQFGTHVLSQHPEAS-----TSVICPLCA--------------ANPEMQPIHSKETENLSVHWTE 138 (381)
T ss_pred ccccCCcccccccchhHHHHHhhhcCcccC-----cceeeeccc--------------cCcccCchhhhhhhhhhhhhhh
Confidence 456799999999999999999998885321 223678777 3577888887765555555555
Q ss_pred h
Q psy15135 123 V 123 (1000)
Q Consensus 123 ~ 123 (1000)
+
T Consensus 139 ~ 139 (381)
T KOG1280|consen 139 I 139 (381)
T ss_pred h
Confidence 4
No 128
>KOG4167|consensus
Probab=35.87 E-value=11 Score=42.78 Aligned_cols=27 Identities=37% Similarity=0.525 Sum_probs=24.4
Q ss_pred CCCcccccccccCChHHHHHHHHHhhc
Q psy15135 134 ERPRCEVCGKTFGLKEYLRRHMRTHRV 160 (1000)
Q Consensus 134 ~~~~C~~C~~~f~~~~~L~~H~~~H~~ 160 (1000)
..|.|..|++.|....+++.||++|.-
T Consensus 791 giFpCreC~kvF~KiKSrNAHMK~Hr~ 817 (907)
T KOG4167|consen 791 GIFPCRECGKVFFKIKSRNAHMKTHRQ 817 (907)
T ss_pred ceeehHHHHHHHHHHhhhhHHHHHHHH
Confidence 468999999999999999999999953
No 129
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=35.79 E-value=28 Score=33.15 Aligned_cols=34 Identities=26% Similarity=0.761 Sum_probs=25.7
Q ss_pred CCCccccCccccccCChHHHHhhhhhccCCCcccCCcCccccc
Q psy15135 845 LEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFN 887 (1000)
Q Consensus 845 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~C~~~f~ 887 (1000)
...-|.|+.|+..|+.-.++. .-|.|+.||....
T Consensus 114 ~~~~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~L~ 147 (178)
T PRK06266 114 NNMFFFCPNCHIRFTFDEAME---------YGFRCPQCGEMLE 147 (178)
T ss_pred CCCEEECCCCCcEEeHHHHhh---------cCCcCCCCCCCCe
Confidence 345688988998888888774 2588999987654
No 130
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=35.79 E-value=33 Score=33.71 Aligned_cols=89 Identities=20% Similarity=0.435 Sum_probs=49.5
Q ss_pred hcCCCcccCCcccccCCChHHHHHHHHHhhhhcccCCcccCccccccCCChHHH-------HHHHhhhcCCCCCCCCccC
Q psy15135 430 AHSGVCYDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYL-------KRHLRVHSNDVQVPHPYKC 502 (1000)
Q Consensus 430 ~h~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~C~~C~~~f~~~~~L-------~~H~~~h~~~~~~~~~~~C 502 (1000)
.|+++.|+|.+|.... -...--.|..+... .....|+|.-|++. ...+-| ..|++.-.-.....+++.|
T Consensus 137 ~hGGrif~CsfC~~fl-CEDDQFEHQAsCQv--Le~E~~KC~SCNrl-Gq~sCLRCK~cfCddHvrrKg~ky~k~k~~PC 212 (314)
T PF06524_consen 137 DHGGRIFKCSFCDNFL-CEDDQFEHQASCQV--LESETFKCQSCNRL-GQYSCLRCKICFCDDHVRRKGFKYEKGKPIPC 212 (314)
T ss_pred cCCCeEEEeecCCCee-eccchhhhhhhhhh--hhcccccccccccc-cchhhhheeeeehhhhhhhcccccccCCCCCC
Confidence 3566778888876432 23333345443221 12245677766642 112222 3566544333333478999
Q ss_pred CcCCcccCCchhHHhhhhcC
Q psy15135 503 TACNAAFNTKSALNVHRKTC 522 (1000)
Q Consensus 503 ~~C~~~f~~~~~L~~H~~~~ 522 (1000)
+.|+........|..-.++|
T Consensus 213 PKCg~et~eTkdLSmStR~h 232 (314)
T PF06524_consen 213 PKCGYETQETKDLSMSTRSH 232 (314)
T ss_pred CCCCCcccccccceeeeecc
Confidence 99999888877776665554
No 131
>KOG4377|consensus
Probab=34.39 E-value=38 Score=35.85 Aligned_cols=24 Identities=21% Similarity=0.531 Sum_probs=20.3
Q ss_pred ccCCc--CcccccCchhhhhccccCC
Q psy15135 877 YKCKD--CGAAFNHNVSLKNHKNSSC 900 (1000)
Q Consensus 877 ~~C~~--C~~~f~~~~~L~~H~~~~~ 900 (1000)
|.|.. |+.+|...+.+..|.|.|.
T Consensus 402 fhc~r~Gc~~tl~s~sqm~shkrkhe 427 (480)
T KOG4377|consen 402 FHCDRLGCEATLYSVSQMASHKRKHE 427 (480)
T ss_pred eeecccCCceEEEehhhhhhhhhhhh
Confidence 66766 9999999999999998874
No 132
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=34.27 E-value=24 Score=24.84 Aligned_cols=12 Identities=25% Similarity=0.797 Sum_probs=6.4
Q ss_pred ccccccCCCCcc
Q psy15135 347 EEVWQCRHCPLK 358 (1000)
Q Consensus 347 ~~~~~C~~C~~~ 358 (1000)
...|.|++|+..
T Consensus 32 p~~w~CP~C~a~ 43 (47)
T PF00301_consen 32 PDDWVCPVCGAP 43 (47)
T ss_dssp -TT-B-TTTSSB
T ss_pred CCCCcCcCCCCc
Confidence 345889988754
No 133
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=33.43 E-value=74 Score=32.23 Aligned_cols=28 Identities=14% Similarity=0.367 Sum_probs=22.2
Q ss_pred CCCCcccccchhhhccChHHHHHHHHhh
Q psy15135 560 AGEEAFTCRICQAVFDKYVRLCGHLRTV 587 (1000)
Q Consensus 560 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h 587 (1000)
+....|+|+.|...|-..-..-.|...|
T Consensus 384 ~ss~rY~Ce~CK~~FC~dCdvfiHe~Lh 411 (421)
T COG5151 384 TSSGRYQCELCKSTFCSDCDVFIHETLH 411 (421)
T ss_pred ccccceechhhhhhhhhhhHHHHHHHHh
Confidence 3345699999999998888888887766
No 134
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=31.75 E-value=24 Score=25.27 Aligned_cols=10 Identities=30% Similarity=0.993 Sum_probs=7.7
Q ss_pred cccccCCCCc
Q psy15135 348 EVWQCRHCPL 357 (1000)
Q Consensus 348 ~~~~C~~C~~ 357 (1000)
..|.|+.|+.
T Consensus 33 ~~w~CP~C~a 42 (50)
T cd00730 33 DDWVCPVCGA 42 (50)
T ss_pred CCCCCCCCCC
Confidence 4688999975
No 135
>KOG2071|consensus
Probab=31.67 E-value=45 Score=37.58 Aligned_cols=28 Identities=18% Similarity=0.451 Sum_probs=21.4
Q ss_pred CCcccCccccccCCChHHHHHHHhhhcC
Q psy15135 465 EQRFVCQYCNKDFPFMKYLKRHLRVHSN 492 (1000)
Q Consensus 465 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~ 492 (1000)
..+-+|..||..|........||.+|..
T Consensus 416 ~~pnqC~~CG~R~~~~ee~sk~md~H~d 443 (579)
T KOG2071|consen 416 DSPNQCKSCGLRFDDSEERSKHMDIHDD 443 (579)
T ss_pred CCcchhcccccccccchhhhhHhhhhhh
Confidence 4567888888888888888777777653
No 136
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=31.59 E-value=21 Score=37.23 Aligned_cols=11 Identities=27% Similarity=0.854 Sum_probs=6.1
Q ss_pred cccCCCCCccc
Q psy15135 816 YHVCPHCGKKF 826 (1000)
Q Consensus 816 ~~~C~~C~~~f 826 (1000)
...|..|+-.+
T Consensus 212 yL~CslC~teW 222 (309)
T PRK03564 212 YLHCNLCESEW 222 (309)
T ss_pred EEEcCCCCCcc
Confidence 35566666544
No 137
>PRK14873 primosome assembly protein PriA; Provisional
Probab=29.32 E-value=38 Score=40.10 Aligned_cols=39 Identities=23% Similarity=0.668 Sum_probs=24.8
Q ss_pred ccCCCCCccccchhhHHHHhhccccccCCCCccccCccccccCChHHHHhhhhhccCCCcccCCcCccc
Q psy15135 817 HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAA 885 (1000)
Q Consensus 817 ~~C~~C~~~f~~~~~L~~H~~~~h~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~C~~~ 885 (1000)
..|+.|+-..+ .|.......|.+||.. ..|..|+.||..
T Consensus 393 ~~C~~C~~~L~--------------~h~~~~~l~Ch~CG~~----------------~~p~~Cp~Cgs~ 431 (665)
T PRK14873 393 ARCRHCTGPLG--------------LPSAGGTPRCRWCGRA----------------APDWRCPRCGSD 431 (665)
T ss_pred eECCCCCCcee--------------EecCCCeeECCCCcCC----------------CcCccCCCCcCC
Confidence 57777775553 2333456788888852 136778888765
No 138
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=29.29 E-value=33 Score=22.58 Aligned_cols=11 Identities=36% Similarity=1.419 Sum_probs=6.4
Q ss_pred ccCCCCCcccc
Q psy15135 817 HVCPHCGKKFT 827 (1000)
Q Consensus 817 ~~C~~C~~~f~ 827 (1000)
..|+.||+.|.
T Consensus 2 r~C~~Cg~~Yh 12 (36)
T PF05191_consen 2 RICPKCGRIYH 12 (36)
T ss_dssp EEETTTTEEEE
T ss_pred cCcCCCCCccc
Confidence 35666666664
No 139
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=29.06 E-value=25 Score=34.37 Aligned_cols=25 Identities=28% Similarity=0.665 Sum_probs=11.7
Q ss_pred ccccccccccccChhHHHHHHHhhc
Q psy15135 654 RFTCEYCVKPFRRTQELRNHVKAVH 678 (1000)
Q Consensus 654 ~~~C~~C~~~f~~~~~L~~H~~~~H 678 (1000)
.|.|..|+|.|.-..-.+.|+...|
T Consensus 77 K~~C~lc~KlFkg~eFV~KHI~nKH 101 (214)
T PF04959_consen 77 KWRCPLCGKLFKGPEFVRKHIFNKH 101 (214)
T ss_dssp EEEE-SSS-EESSHHHHHHHHHHH-
T ss_pred EECCCCCCcccCChHHHHHHHhhcC
Confidence 3555555555555555555555444
No 140
>PF14353 CpXC: CpXC protein
Probab=28.52 E-value=15 Score=32.84 Aligned_cols=20 Identities=40% Similarity=0.670 Sum_probs=12.9
Q ss_pred CccCCcCcccccChHHHHhh
Q psy15135 103 RFTCEYCVKPFRRTQELRNH 122 (1000)
Q Consensus 103 ~~~C~~C~~~f~~~~~L~~H 122 (1000)
.|+|+.||..|.-...+.-|
T Consensus 38 ~~~CP~Cg~~~~~~~p~lY~ 57 (128)
T PF14353_consen 38 SFTCPSCGHKFRLEYPLLYH 57 (128)
T ss_pred EEECCCCCCceecCCCEEEE
Confidence 46777777777666555554
No 141
>KOG2593|consensus
Probab=28.47 E-value=47 Score=35.81 Aligned_cols=35 Identities=26% Similarity=0.574 Sum_probs=22.2
Q ss_pred CcccCCcccccCCChHHHHHHHHHhhhhcccCCcccCccccc
Q psy15135 434 VCYDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNK 475 (1000)
Q Consensus 434 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~C~~C~~ 475 (1000)
..|.|+.|++.|+....+..= ......|.|..|+-
T Consensus 127 ~~Y~Cp~C~kkyt~Lea~~L~-------~~~~~~F~C~~C~g 161 (436)
T KOG2593|consen 127 AGYVCPNCQKKYTSLEALQLL-------DNETGEFHCENCGG 161 (436)
T ss_pred ccccCCccccchhhhHHHHhh-------cccCceEEEecCCC
Confidence 457788888877776655432 22345677777764
No 142
>PF12907 zf-met2: Zinc-binding
Probab=27.37 E-value=40 Score=22.81 Aligned_cols=25 Identities=24% Similarity=0.648 Sum_probs=17.5
Q ss_pred cccccccccc---cChhHHHHHHHhhcc
Q psy15135 655 FTCEYCVKPF---RRTQELRNHVKAVHL 679 (1000)
Q Consensus 655 ~~C~~C~~~f---~~~~~L~~H~~~~H~ 679 (1000)
+.|.+|...| .+...|..|....|.
T Consensus 2 i~C~iC~qtF~~t~~~~~L~eH~enKHp 29 (40)
T PF12907_consen 2 IICKICRQTFMQTTNEPQLKEHAENKHP 29 (40)
T ss_pred cCcHHhhHHHHhcCCHHHHHHHHHccCC
Confidence 5678887555 445678888887773
No 143
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=27.32 E-value=21 Score=33.30 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=9.9
Q ss_pred ccccccchhhhhcChhhH
Q psy15135 12 EAFTCRICQAVFDKYVRL 29 (1000)
Q Consensus 12 ~~~~C~~C~~~f~~~~~L 29 (1000)
.-|.|+.|+..|+...++
T Consensus 108 ~~Y~Cp~c~~r~tf~eA~ 125 (158)
T TIGR00373 108 MFFICPNMCVRFTFNEAM 125 (158)
T ss_pred CeEECCCCCcEeeHHHHH
Confidence 335566666555555554
No 144
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=27.16 E-value=36 Score=29.73 Aligned_cols=25 Identities=28% Similarity=0.289 Sum_probs=14.2
Q ss_pred ccccchhhhhcChhhHHHHHHhhhCCCC
Q psy15135 14 FTCRICQAVFDKYVRLCGHLRTVHNEKP 41 (1000)
Q Consensus 14 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~ 41 (1000)
..|-++||.|. .|++|+.+|++-.|
T Consensus 77 IicLEDGkkfK---SLKRHL~t~~gmTP 101 (148)
T COG4957 77 IICLEDGKKFK---SLKRHLTTHYGLTP 101 (148)
T ss_pred EEEeccCcchH---HHHHHHhcccCCCH
Confidence 45666666653 45666666655544
No 145
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.97 E-value=42 Score=38.46 Aligned_cols=40 Identities=33% Similarity=0.816 Sum_probs=25.8
Q ss_pred ccCCCCCccccchhhHHHHhhccccccCCCCccccCccccccCChHHHHhhhhhccCCCcccCCcCccc
Q psy15135 817 HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAA 885 (1000)
Q Consensus 817 ~~C~~C~~~f~~~~~L~~H~~~~h~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~C~~~ 885 (1000)
..|+.|+-..+ . |.......|.+||... .-|..|+.||..
T Consensus 223 ~~C~~C~~~l~------~--------h~~~~~l~Ch~Cg~~~---------------~~~~~Cp~C~s~ 262 (505)
T TIGR00595 223 LCCPNCDVSLT------Y--------HKKEGKLRCHYCGYQE---------------PIPKTCPQCGSE 262 (505)
T ss_pred cCCCCCCCceE------E--------ecCCCeEEcCCCcCcC---------------CCCCCCCCCCCC
Confidence 67888865432 2 3335567888888643 346678888764
No 146
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=26.67 E-value=39 Score=30.15 Aligned_cols=26 Identities=42% Similarity=0.681 Sum_probs=16.4
Q ss_pred cccccccccccccHHHHHHHHhHhcCccc
Q psy15135 686 RPRCEVCGKTFGLKEYLRRHMRTHRVERK 714 (1000)
Q Consensus 686 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 714 (1000)
...|-+||+.|.. |++|++.|+|-.|
T Consensus 72 ~i~clecGk~~k~---LkrHL~~~~gltp 97 (132)
T PF05443_consen 72 YIICLECGKKFKT---LKRHLRTHHGLTP 97 (132)
T ss_dssp -EE-TBT--EESB---HHHHHHHTT-S-H
T ss_pred eeEEccCCcccch---HHHHHHHccCCCH
Confidence 3679999999976 5899999977654
No 147
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=26.31 E-value=38 Score=27.68 Aligned_cols=14 Identities=21% Similarity=0.463 Sum_probs=8.5
Q ss_pred CccccCccccccCC
Q psy15135 847 KTYICEYCHKEFTF 860 (1000)
Q Consensus 847 k~~~C~~C~k~f~~ 860 (1000)
..+.|..|++.|.-
T Consensus 53 GIW~C~~C~~~~AG 66 (90)
T PTZ00255 53 GIWRCKGCKKTVAG 66 (90)
T ss_pred EEEEcCCCCCEEeC
Confidence 45666666666653
No 148
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=26.27 E-value=23 Score=40.77 Aligned_cols=60 Identities=27% Similarity=0.587 Sum_probs=44.7
Q ss_pred cCCCCCccccchhhHHHHhhccccccCCCCccc-cCccccccCChHHHHhhhhhccCCCcccCCcCcccccC
Q psy15135 818 VCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYI-CEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNH 888 (1000)
Q Consensus 818 ~C~~C~~~f~~~~~L~~H~~~~h~~h~~~k~~~-C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~C~~~f~~ 888 (1000)
.|..||=.|+--..|=.= +..|.-+.|. |+.|.+.|.+..+-+-| ..|..|+.||=....
T Consensus 125 ~CT~CGPRfTIi~alPYD-----R~nTsM~~F~lC~~C~~EY~dP~nRRfH------AQp~aCp~CGP~~~l 185 (750)
T COG0068 125 NCTNCGPRFTIIEALPYD-----RENTSMADFPLCPFCDKEYKDPLNRRFH------AQPIACPKCGPHLFL 185 (750)
T ss_pred ccCCCCcceeeeccCCCC-----cccCccccCcCCHHHHHHhcCccccccc------cccccCcccCCCeEE
Confidence 699999999876665333 2455555664 99999999999887776 458899999975443
No 149
>KOG4124|consensus
Probab=26.20 E-value=18 Score=37.17 Aligned_cols=56 Identities=32% Similarity=0.596 Sum_probs=42.0
Q ss_pred CCcccCC--CCCccccchhhHHHHhhccc-----------cccC----CCCccccCccccccCChHHHHhhhh
Q psy15135 814 GQYHVCP--HCGKKFTRKAELQLHIKGIH-----------LKHQ----LEKTYICEYCHKEFTFYNYLRRHMR 869 (1000)
Q Consensus 814 ~~~~~C~--~C~~~f~~~~~L~~H~~~~h-----------~~h~----~~k~~~C~~C~k~f~~~~~L~~H~~ 869 (1000)
.++|+|+ .|.+.+.....|+.|...-| +-|+ ..|+|.|++|.+++..-..|.-|..
T Consensus 347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~~h~s~i~~~s~~~~ph~~~~~~nk~~r~~i~~~~~k~~~~l~~~~~ 419 (442)
T KOG4124|consen 347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPAPIPHQGFVVENKPYRCEVCSKRYKNLNGLKYHRT 419 (442)
T ss_pred cCCCCCCCCcchhhcccCcceeeccccCcCCCCCCCCCCCCCcceeeeccCcccChhhhhhhccCCCCCceee
Confidence 4568885 59999999999999865333 1232 3589999999999988887777643
No 150
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=26.14 E-value=49 Score=22.38 Aligned_cols=13 Identities=31% Similarity=0.815 Sum_probs=8.9
Q ss_pred CceecCCcCcccc
Q psy15135 225 VTYNCKFCSMKFT 237 (1000)
Q Consensus 225 ~~y~C~~C~~~f~ 237 (1000)
.-|.|..|+..|.
T Consensus 27 ~fy~C~~C~~~w~ 39 (40)
T smart00440 27 VFYVCTKCGHRWR 39 (40)
T ss_pred EEEEeCCCCCEeC
Confidence 4577877876653
No 151
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=25.70 E-value=39 Score=22.69 Aligned_cols=12 Identities=25% Similarity=0.769 Sum_probs=8.7
Q ss_pred CceecCCcCccc
Q psy15135 225 VTYNCKFCSMKF 236 (1000)
Q Consensus 225 ~~y~C~~C~~~f 236 (1000)
.-|.|..|+..|
T Consensus 27 ~fy~C~~C~~~w 38 (39)
T PF01096_consen 27 LFYVCCNCGHRW 38 (39)
T ss_dssp EEEEESSSTEEE
T ss_pred EEEEeCCCCCee
Confidence 457888887765
No 152
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=25.49 E-value=36 Score=27.87 Aligned_cols=14 Identities=21% Similarity=0.593 Sum_probs=8.4
Q ss_pred CccccCccccccCC
Q psy15135 847 KTYICEYCHKEFTF 860 (1000)
Q Consensus 847 k~~~C~~C~k~f~~ 860 (1000)
..+.|..|++.|.-
T Consensus 52 GIW~C~~C~~~~AG 65 (91)
T TIGR00280 52 GIWTCRKCGAKFAG 65 (91)
T ss_pred EEEEcCCCCCEEeC
Confidence 45666666666643
No 153
>KOG2907|consensus
Probab=25.47 E-value=45 Score=28.26 Aligned_cols=38 Identities=26% Similarity=0.498 Sum_probs=0.0
Q ss_pred cccchhhhhhhHHhhhcccCCCCc---ccCCCCCccccchh
Q psy15135 793 ICDICSAEVVHLAIHKKHSHSGQY---HVCPHCGKKFTRKA 830 (1000)
Q Consensus 793 ~C~~c~~~~~~l~~h~~~~~~~~~---~~C~~C~~~f~~~~ 830 (1000)
.|+.||........-+..+..+.. |.|+.|++.|...+
T Consensus 76 kCpkCghe~m~Y~T~QlRSADEGQTVFYTC~kC~~k~~e~s 116 (116)
T KOG2907|consen 76 KCPKCGHEEMSYHTLQLRSADEGQTVFYTCPKCKYKFTENS 116 (116)
T ss_pred cCcccCCchhhhhhhhcccccCCceEEEEcCccceeeeccC
No 154
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=24.97 E-value=28 Score=28.40 Aligned_cols=12 Identities=33% Similarity=0.946 Sum_probs=7.9
Q ss_pred ccccCccccccC
Q psy15135 848 TYICEYCHKEFT 859 (1000)
Q Consensus 848 ~~~C~~C~k~f~ 859 (1000)
-+.|.-|++.|.
T Consensus 53 IW~C~~C~~~~A 64 (90)
T PF01780_consen 53 IWKCKKCGKKFA 64 (90)
T ss_dssp EEEETTTTEEEE
T ss_pred EeecCCCCCEEe
Confidence 467777776664
No 155
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=24.51 E-value=37 Score=26.26 Aligned_cols=9 Identities=44% Similarity=1.017 Sum_probs=2.3
Q ss_pred ccCcccccc
Q psy15135 850 ICEYCHKEF 858 (1000)
Q Consensus 850 ~C~~C~k~f 858 (1000)
.|.+|++.|
T Consensus 11 ~C~~C~~~F 19 (69)
T PF01363_consen 11 NCMICGKKF 19 (69)
T ss_dssp B-TTT--B-
T ss_pred cCcCcCCcC
Confidence 344455544
No 156
>PF14353 CpXC: CpXC protein
Probab=24.42 E-value=6.6 Score=35.22 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=17.8
Q ss_pred Ccceecccccchhhhhhhhhhcccc
Q psy15135 292 GHVTYTCKQCNLTFTNKHLFRNHKL 316 (1000)
Q Consensus 292 ~~~~~~C~~C~~~f~~~~~l~~H~~ 316 (1000)
.-..|.|+.||..|.-...+.-|..
T Consensus 35 ~l~~~~CP~Cg~~~~~~~p~lY~D~ 59 (128)
T PF14353_consen 35 SLFSFTCPSCGHKFRLEYPLLYHDP 59 (128)
T ss_pred CcCEEECCCCCCceecCCCEEEEcC
Confidence 3446888888888877777766643
No 157
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=23.07 E-value=39 Score=22.72 Aligned_cols=13 Identities=38% Similarity=1.068 Sum_probs=10.4
Q ss_pred cccCCcCcccccC
Q psy15135 876 PYKCKDCGAAFNH 888 (1000)
Q Consensus 876 p~~C~~C~~~f~~ 888 (1000)
||+|+.|++.|=.
T Consensus 12 ~f~C~~C~~~FC~ 24 (39)
T smart00154 12 GFKCRHCGNLFCG 24 (39)
T ss_pred CeECCccCCcccc
Confidence 7888888888853
No 158
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=22.70 E-value=43 Score=32.83 Aligned_cols=31 Identities=35% Similarity=0.734 Sum_probs=23.2
Q ss_pred CCCCcccccccccccccHHHHHHHHhHhcCc
Q psy15135 682 TPEERPRCEVCGKTFGLKEYLRRHMRTHRVE 712 (1000)
Q Consensus 682 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~ 712 (1000)
..+..|.|.+|+|.|.-..-.+.|+..-+.+
T Consensus 73 ~~~~K~~C~lc~KlFkg~eFV~KHI~nKH~e 103 (214)
T PF04959_consen 73 EDEDKWRCPLCGKLFKGPEFVRKHIFNKHPE 103 (214)
T ss_dssp SSSEEEEE-SSS-EESSHHHHHHHHHHH-HH
T ss_pred HcCCEECCCCCCcccCChHHHHHHHhhcCHH
Confidence 4566799999999999999999999765444
No 159
>KOG3408|consensus
Probab=22.53 E-value=48 Score=28.44 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=22.9
Q ss_pred CCCCCCcccccccccCChHHHHHHHHH
Q psy15135 131 TPEERPRCEVCGKTFGLKEYLRRHMRT 157 (1000)
Q Consensus 131 ~~~~~~~C~~C~~~f~~~~~L~~H~~~ 157 (1000)
.+...|.|-.|.+-|.+...|..|.++
T Consensus 53 PG~GqfyCi~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 53 PGGGQFYCIECARYFIDAKALKTHFKT 79 (129)
T ss_pred CCCceeehhhhhhhhcchHHHHHHHhc
Confidence 444568999999999999999999875
No 160
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=22.50 E-value=39 Score=30.50 Aligned_cols=13 Identities=31% Similarity=0.882 Sum_probs=10.7
Q ss_pred ccCCCCCccccch
Q psy15135 817 HVCPHCGKKFTRK 829 (1000)
Q Consensus 817 ~~C~~C~~~f~~~ 829 (1000)
+.|..||..|...
T Consensus 71 ~~C~~CG~~~~~~ 83 (135)
T PRK03824 71 LKCRNCGNEWSLK 83 (135)
T ss_pred EECCCCCCEEecc
Confidence 8899999888764
No 161
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.37 E-value=36 Score=26.31 Aligned_cols=10 Identities=30% Similarity=0.959 Sum_probs=5.4
Q ss_pred ccCCcCcccc
Q psy15135 104 FTCEYCVKPF 113 (1000)
Q Consensus 104 ~~C~~C~~~f 113 (1000)
|.|..|+..|
T Consensus 13 Y~c~~cg~~~ 22 (82)
T COG2331 13 YECTECGNRF 22 (82)
T ss_pred EeecccchHH
Confidence 5555555444
No 162
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=22.28 E-value=43 Score=35.00 Aligned_cols=10 Identities=20% Similarity=0.800 Sum_probs=5.8
Q ss_pred ccCCCCCccc
Q psy15135 817 HVCPHCGKKF 826 (1000)
Q Consensus 817 ~~C~~C~~~f 826 (1000)
..|..|+-.+
T Consensus 211 L~CslC~teW 220 (305)
T TIGR01562 211 LSCSLCATEW 220 (305)
T ss_pred EEcCCCCCcc
Confidence 5566666544
No 163
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=22.18 E-value=1.1e+02 Score=20.84 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=12.8
Q ss_pred CCCccccchhhcCC--hHHHHHHHH
Q psy15135 43 KSNLCFVCAKVFAT--RATLTLHIK 65 (1000)
Q Consensus 43 ~~~~C~~C~~~f~~--~~~L~~H~~ 65 (1000)
....|+.||..|.. ..+-..|.+
T Consensus 12 ~~~~C~~CgM~Y~~~~~eD~~~H~~ 36 (41)
T PF13878_consen 12 GATTCPTCGMLYSPGSPEDEKLHKK 36 (41)
T ss_pred CCcCCCCCCCEECCCCHHHHHHHHH
Confidence 33457777776654 344455555
No 164
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=22.11 E-value=56 Score=24.01 Aligned_cols=12 Identities=33% Similarity=0.993 Sum_probs=5.9
Q ss_pred cccCCcCccccc
Q psy15135 876 PYKCKDCGAAFN 887 (1000)
Q Consensus 876 p~~C~~C~~~f~ 887 (1000)
.+.|..||+.|=
T Consensus 18 k~~Cr~Cg~~~C 29 (57)
T cd00065 18 RHHCRNCGRIFC 29 (57)
T ss_pred ccccCcCcCCcC
Confidence 344555555544
No 165
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=21.78 E-value=38 Score=30.28 Aligned_cols=13 Identities=38% Similarity=0.866 Sum_probs=8.2
Q ss_pred ccCCCCCccccch
Q psy15135 817 HVCPHCGKKFTRK 829 (1000)
Q Consensus 817 ~~C~~C~~~f~~~ 829 (1000)
|.|+.|+++|...
T Consensus 54 yrC~~C~~tf~~~ 66 (129)
T COG3677 54 YKCKSCGSTFTVE 66 (129)
T ss_pred cccCCcCcceeee
Confidence 6666666666543
No 166
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=21.55 E-value=45 Score=27.27 Aligned_cols=14 Identities=21% Similarity=0.543 Sum_probs=8.1
Q ss_pred CccccCccccccCC
Q psy15135 847 KTYICEYCHKEFTF 860 (1000)
Q Consensus 847 k~~~C~~C~k~f~~ 860 (1000)
..+.|.-|++.|.-
T Consensus 53 GIW~C~~C~~~~AG 66 (90)
T PRK03976 53 GIWECRKCGAKFAG 66 (90)
T ss_pred EEEEcCCCCCEEeC
Confidence 34666666666543
No 167
>KOG3408|consensus
Probab=21.01 E-value=98 Score=26.70 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=23.6
Q ss_pred CCCCCcccccchhhhccChHHHHHHHHh
Q psy15135 559 PAGEEAFTCRICQAVFDKYVRLCGHLRT 586 (1000)
Q Consensus 559 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~ 586 (1000)
-.|-..|.|-.|.+-|.+...|..|.++
T Consensus 52 lPG~GqfyCi~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 52 LPGGGQFYCIECARYFIDAKALKTHFKT 79 (129)
T ss_pred CCCCceeehhhhhhhhcchHHHHHHHhc
Confidence 4556678999999999999999999875
No 168
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=20.95 E-value=47 Score=29.11 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=20.9
Q ss_pred ccccccccccccHHHHHHHHhHhcCccc
Q psy15135 687 PRCEVCGKTFGLKEYLRRHMRTHRVERK 714 (1000)
Q Consensus 687 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~ 714 (1000)
..|-.+|+.|. +|++|+.+|.|--|
T Consensus 77 IicLEDGkkfK---SLKRHL~t~~gmTP 101 (148)
T COG4957 77 IICLEDGKKFK---SLKRHLTTHYGLTP 101 (148)
T ss_pred EEEeccCcchH---HHHHHHhcccCCCH
Confidence 57999999996 58999999988654
No 169
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=20.61 E-value=30 Score=25.26 Aligned_cols=11 Identities=27% Similarity=0.721 Sum_probs=6.5
Q ss_pred ccCCcCccccc
Q psy15135 104 FTCEYCVKPFR 114 (1000)
Q Consensus 104 ~~C~~C~~~f~ 114 (1000)
|+|+.||..+.
T Consensus 3 ~~CP~CG~~ie 13 (54)
T TIGR01206 3 FECPDCGAEIE 13 (54)
T ss_pred cCCCCCCCEEe
Confidence 56666666553
No 170
>COG4896 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.49 E-value=49 Score=24.28 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=26.4
Q ss_pred ccccchhhh-hcChhhHHHHHHhhhCCCCCCCCccccchhhcCCh
Q psy15135 14 FTCRICQAV-FDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATR 57 (1000)
Q Consensus 14 ~~C~~C~~~-f~~~~~L~~H~~~h~~~~~~~~~~C~~C~~~f~~~ 57 (1000)
-+|.+|+++ |-....+..-.. ..+|-..|+|+.|.-+...+
T Consensus 3 vkCiiCd~v~~iD~rt~~tKrL---rN~PIrtymC~eC~~Rva~k 44 (68)
T COG4896 3 VKCIICDRVDEIDNRTFKTKRL---RNKPIRTYMCPECEHRVAIK 44 (68)
T ss_pred ceEEEecceeeecchhHHHHHh---hCCCceeEechhhHhhhchh
Confidence 468888876 333333333222 34777888899998877665
No 171
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=20.35 E-value=30 Score=24.22 Aligned_cols=9 Identities=67% Similarity=1.726 Sum_probs=5.1
Q ss_pred ccCCCCCcc
Q psy15135 817 HVCPHCGKK 825 (1000)
Q Consensus 817 ~~C~~C~~~ 825 (1000)
+.|+.||..
T Consensus 19 ~~CP~Cg~~ 27 (46)
T PF12760_consen 19 FVCPHCGST 27 (46)
T ss_pred CCCCCCCCe
Confidence 556666643
No 172
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=20.15 E-value=40 Score=24.19 Aligned_cols=9 Identities=44% Similarity=0.855 Sum_probs=4.1
Q ss_pred Ccccccccc
Q psy15135 136 PRCEVCGKT 144 (1000)
Q Consensus 136 ~~C~~C~~~ 144 (1000)
+.|..|+.+
T Consensus 38 ~~C~~Cgyt 46 (50)
T PRK00432 38 WHCGKCGYT 46 (50)
T ss_pred EECCCcCCE
Confidence 444444444
No 173
>PRK05580 primosome assembly protein PriA; Validated
Probab=20.04 E-value=66 Score=38.54 Aligned_cols=40 Identities=30% Similarity=0.823 Sum_probs=25.2
Q ss_pred ccCCCCCccccchhhHHHHhhccccccCCCCccccCccccccCChHHHHhhhhhccCCCcccCCcCccc
Q psy15135 817 HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAA 885 (1000)
Q Consensus 817 ~~C~~C~~~f~~~~~L~~H~~~~h~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~C~~~ 885 (1000)
..|+.|+-... .|.......|.+||... ..|..|+.||..
T Consensus 391 ~~C~~C~~~l~--------------~h~~~~~l~Ch~Cg~~~---------------~~~~~Cp~Cg~~ 430 (679)
T PRK05580 391 AECPHCDASLT--------------LHRFQRRLRCHHCGYQE---------------PIPKACPECGST 430 (679)
T ss_pred cCCCCCCCcee--------------EECCCCeEECCCCcCCC---------------CCCCCCCCCcCC
Confidence 67777776543 23334567788888643 346678888765
Done!