RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15135
(1000 letters)
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 38.9 bits (91), Expect = 2e-04
Identities = 17/26 (65%), Positives = 19/26 (73%)
Query: 863 YLRRHMRVHTNEKPYKCKDCGAAFNH 888
LRRHMR HT EKPYKC CG +F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 30.4 bits (69), Expect = 0.24
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 701 YLRRHMRTHRVERKYKC-VCGDGFN 724
LRRHMRTH E+ YKC VCG F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFS 25
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 38.9 bits (90), Expect = 0.014
Identities = 30/156 (19%), Positives = 49/156 (31%), Gaps = 19/156 (12%)
Query: 847 KTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNSSCPKRDMT 906
+ C C F+ +L RH+R HT EKP +C G K+ R +
Sbjct: 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCD-------KSFSRPLELSRHLR 84
Query: 907 ATPPAPRRTESNTRHSHL-----SSNSTSPSHNGPVDLGHNPA-MHSAPTLATSSNVRIP 960
P S + SS S+S S++ +L + + S+ + I
Sbjct: 85 THHNNPSDLNSKSLPLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSIS 144
Query: 961 KFDRRQHQRSMMEMIQNSSNIATNVPFPAVFDAAHM 996
+ NSS++ T
Sbjct: 145 NLRNNPLPGN------NSSSVNTPQSNSLHPPLPAN 174
Score = 38.1 bits (88), Expect = 0.024
Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 20/147 (13%)
Query: 809 KHSHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYIC--EYCHKEFTFYNYLRR 866
C F+R + L H++ ++ + K + C C K F+ + L+R
Sbjct: 282 SEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKR 341
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNSSCPKRDMTATPPAPRRTESNTRHSHLSS 926
H+ +HT+ P K K + + P ++ +
Sbjct: 342 HILLHTSISPAKE----------------KLLNSSSKFSPLLNNEPPQSLQQYKDLKNDK 385
Query: 927 NSTSPSH--NGPVDLGHNPAMHSAPTL 951
S + S+ N ++H L
Sbjct: 386 KSETLSNSCIRNFKRDSNLSLHIITHL 412
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 30.4 bits (69), Expect = 0.25
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 137 RCEVCGKTFGLKEYLRRHMRTH 158
+C CGK+F K L+RH+RTH
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 30.4 bits (69), Expect = 0.25
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 688 RCEVCGKTFGLKEYLRRHMRTH 709
+C CGK+F K L+RH+RTH
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 27.7 bits (62), Expect = 1.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 850 ICEYCHKEFTFYNYLRRHMRVH 871
C C K F+ + L+RH+R H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 27.7 bits (62), Expect = 2.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 260 VCQYCNKEFPFQGYLNKHMKTH 281
C C K F + L +H++TH
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 27.7 bits (62), Expect = 2.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 818 VCPHCGKKFTRKAELQLHIK 837
CP CGK F+RK+ L+ H++
Sbjct: 1 KCPDCGKSFSRKSNLKRHLR 20
Score = 26.5 bits (59), Expect = 5.6
Identities = 11/22 (50%), Positives = 11/22 (50%)
Query: 469 VCQYCNKDFPFMKYLKRHLRVH 490
C C K F LKRHLR H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 29.4 bits (66), Expect = 0.50
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 137 RCEVCGKTFGLKEYLRRHMRTH 158
RC CGK F K LR HMRTH
Sbjct: 2 RCPECGKVFKSKSALREHMRTH 23
Score = 29.4 bits (66), Expect = 0.50
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 688 RCEVCGKTFGLKEYLRRHMRTH 709
RC CGK F K LR HMRTH
Sbjct: 2 RCPECGKVFKSKSALREHMRTH 23
Score = 29.0 bits (65), Expect = 0.63
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 849 YICEYCHKEFTFYNYLRRHMRVH 871
Y C C K F + LR HMR H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 28.2 bits (63), Expect = 1.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 259 FVCQYCNKEFPFQGYLNKHMKTH 281
+ C C K F + L +HM+TH
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 26.7 bits (59), Expect = 4.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 817 HVCPHCGKKFTRKAELQLHIK 837
+ CP CGK F K+ L+ H++
Sbjct: 1 YRCPECGKVFKSKSALREHMR 21
Score = 25.9 bits (57), Expect = 9.3
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 468 FVCQYCNKDFPFMKYLKRHLRVH 490
+ C C K F L+ H+R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|212564 cd11674, lambda-1, inner capsid protein lambda-1 or VP3. The
reovirus inner capsid protein lambda-1 displays
nucleoside triphosphate phosphohydrolase (NTPase),
RNA-5'-triphosphatase (RTPase), and RNA helicase
activity and may play a role in the transcription of the
virus genome, the unwinding or reannealing of
double-stranded RNA during RNA synthesis. The RTPase
activity constitutes the first step in the capping of
RNA, resulting in a 5'-diphosphorylated RNA plus-strand.
lambda1 is an Orthoreovirus core protein, VP3 is the
homologous core protein in Aquareoviruses.
Length = 1166
Score = 33.2 bits (76), Expect = 0.85
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 489 VHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
P Y C C A F++ L H++T
Sbjct: 63 SKKATPINPSSYVCNVCMAEFSSMDQLAEHQRT 95
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 30.8 bits (70), Expect = 1.8
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 309 HLFRNHKLFEADEFFDGEVPLYESSSDKEDVEEEEEMEEEV 349
H+ H + ++ D + E D+ED +E+E EEE
Sbjct: 100 HISGQHLVASEEDESDDDEEDEEEEDDEEDDDEDESEEEES 140
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or more
acidic residues. The function of members of this family
is unknown.
Length = 104
Score = 29.6 bits (67), Expect = 2.2
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 814 GQYHVCPHCGKKF 826
G CP CGK+F
Sbjct: 7 GTKRTCPTCGKRF 19
>gnl|CDD|213729 TIGR02605, CxxC_CxxC_SSSS, putative regulatory protein, FmdB
family. This model represents a region of about 50
amino acids found in a number of small proteins in a
wide range of bacteria. The region begins usually with
the initiator Met and contains two CxxC motifs separated
by 17 amino acids. One member of this family is has been
noted as a putative regulatory protein, designated FmdB
(SP:Q50229, PMID:8841393 ). Most members of this family
have a C-terminal region containing highly degenerate
sequence, such as
SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in
Mycobacterium tuberculosis and
VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces
avermitilis. These low complexity regions, which are not
included in the model, resemble low-complexity
C-terminal regions of some heterocycle-containing
bacteriocin precursors [Regulatory functions, DNA
interactions].
Length = 52
Score = 28.4 bits (64), Expect = 2.2
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 877 YKCKDCGAAFNHNVSLKNHKNSSCPK 902
Y+C CG F + + ++CP+
Sbjct: 6 YRCTACGHRFEVLQKMSDDPLATCPE 31
>gnl|CDD|221755 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies). This
family contains two copies of a C2H2-like zinc finger
domain.
Length = 100
Score = 29.2 bits (66), Expect = 3.3
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 19/76 (25%)
Query: 229 CKFCSMKFTRVGQMNIHIKTVH-------------------LKHMLEKKFVCQYCNKEFP 269
C FC+ V + H+ H L+ + + C YC K+F
Sbjct: 2 CLFCNHTSDTVEENLEHMFKSHGFFIPEREYLVDLEGLLNYLREKIHEGNECLYCGKQFK 61
Query: 270 FQGYLNKHMKTHNHHG 285
L +HM+ H
Sbjct: 62 SLEALRQHMRDKGHCK 77
Score = 28.0 bits (63), Expect = 7.1
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 760 CYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQYHVC 819
C C + S H+ HG +R + + D+ +++ K H + + C
Sbjct: 2 CLFCNHTSDTVEENLEHMFKSHGFFIPER--EYLVDL--EGLLNYLREKIH----EGNEC 53
Query: 820 PHCGKKFTRKAELQLHIK 837
+CGK+F L+ H++
Sbjct: 54 LYCGKQFKSLEALRQHMR 71
Score = 28.0 bits (63), Expect = 7.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 840 HLKHQLEKTYICEYCHKEFTFYNYLRRHMR 869
+L+ ++ + C YC K+F LR+HMR
Sbjct: 42 YLREKIHEGNECLYCGKQFKSLEALRQHMR 71
>gnl|CDD|227225 COG4888, COG4888, Uncharacterized Zn ribbon-containing protein
[General function prediction only].
Length = 104
Score = 29.4 bits (66), Expect = 3.3
Identities = 21/101 (20%), Positives = 29/101 (28%), Gaps = 25/101 (24%)
Query: 255 LEKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTFTNKHLFRNH 314
L K F C C E + K T C C L+F
Sbjct: 19 LPKTFTCPRCGHEKVSSCTVKK-------------TVNIGTAVCGNCGLSFE----CEVP 61
Query: 315 KLFE--------ADEFFDGEVPLYESSSDKEDVEEEEEMEE 347
+L E D + +G + ++ D E E EE
Sbjct: 62 ELSEPVDVYSAWVDAYLEGRGCGESGTDEENDQEIESPGEE 102
>gnl|CDD|220661 pfam10263, SprT-like, SprT-like family. This family represents a
domain found in eukaryotes and prokaryotes. The domain
contains a characteristic motif of the zinc
metallopeptidases. This family includes the bacterial
SprT protein.
Length = 153
Score = 29.7 bits (67), Expect = 3.8
Identities = 18/98 (18%), Positives = 27/98 (27%), Gaps = 24/98 (24%)
Query: 800 EVVHLAIHKKHSHSGQYHVCPHCGKKFTRKAEL--QLHIKGIHLKHQLEKT--------- 848
E+ H A+ G H G +F H+ +
Sbjct: 65 EMCHAALFLLFGGRGYPH-----GDEFKALMAQVGGAGPLEPTTTHRFDIEVVSGRKRYI 119
Query: 849 YICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAF 886
Y C C + + +RRH Y+C CG
Sbjct: 120 YRCGSCGQLYPRKRRIRRHK--------YRCGRCGGKL 149
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 29.5 bits (66), Expect = 3.9
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 104 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTF 145
+ C C+ PF + L+ H++ ++ C VCGK F
Sbjct: 74 YVCPLCLMPFSSSVSLKQHIRYTEHSKV------CPVCGKEF 109
Score = 29.5 bits (66), Expect = 3.9
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 655 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTF 696
+ C C+ PF + L+ H++ ++ C VCGK F
Sbjct: 74 YVCPLCLMPFSSSVSLKQHIRYTEHSKV------CPVCGKEF 109
Score = 29.1 bits (65), Expect = 4.9
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 14 FTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMH 68
+ C +C F V L H+R E S +C VC K F + H+ + H
Sbjct: 74 YVCPLCLMPFSSSVSLKQHIRYT-----EHSKVCPVCGKEFRNTDSTLDHVCKKH 123
Score = 29.1 bits (65), Expect = 4.9
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 565 FTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMH 619
+ C +C F V L H+R E S +C VC K F + H+ + H
Sbjct: 74 YVCPLCLMPFSSSVSLKQHIRYT-----EHSKVCPVCGKEFRNTDSTLDHVCKKH 123
Score = 28.3 bits (63), Expect = 8.3
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 817 HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFT 859
+VCP C F+ L+ HI+ E + +C C KEF
Sbjct: 74 YVCPLCLMPFSSSVSLKQHIR------YTEHSKVCPVCGKEFR 110
Score = 28.3 bits (63), Expect = 9.4
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 848 TYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
Y+C C F+ L++H+R + K C CG F + S +H
Sbjct: 73 PYVCPLCLMPFSSSVSLKQHIRYTEHSK--VCPVCGKEFRNTDSTLDH 118
>gnl|CDD|220362 pfam09723, CxxC_CxxC_SSSS, Zinc ribbon domain. This entry
represents a region of about 41 amino acids found in a
number of small proteins in a wide range of bacteria.
The region usually begins with the initiator Met and
contains two CxxC motifs separated by 17 amino acids.
One protein in this entry has been noted as a putative
regulatory protein, designated FmdB. Most proteins in
this entry have a C-terminal region containing highly
degenerate sequence.
Length = 42
Score = 26.8 bits (60), Expect = 5.3
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 877 YKCKDCGAAFNHNVSLKNHKNSSCPK 902
Y+C+DCG F + + ++CP+
Sbjct: 6 YRCEDCGHTFEVLQKISDDPLATCPE 31
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family contains
a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 26.4 bits (58), Expect = 6.0
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 137 RCEVCGKTFGLKEYLRRHMRTH 158
+C +CGK+F K+ L+RH+R H
Sbjct: 2 KCPLCGKSFSSKDALKRHLRKH 23
Score = 26.4 bits (58), Expect = 6.0
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 688 RCEVCGKTFGLKEYLRRHMRTH 709
+C +CGK+F K+ L+RH+R H
Sbjct: 2 KCPLCGKSFSSKDALKRHLRKH 23
Score = 26.4 bits (58), Expect = 6.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 849 YICEYCHKEFTFYNYLRRHMRVH 871
+ C C K F+ + L+RH+R H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 26.1 bits (57), Expect = 8.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 817 HVCPHCGKKFTRKAELQLHIKGIH 840
CP CGK F+ K L+ H++ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKHH 24
>gnl|CDD|227812 COG5525, COG5525, Phage terminase, large subunit GpA [Replication,
recombination and repair].
Length = 611
Score = 30.1 bits (68), Expect = 6.7
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 811 SHSGQYHV-CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKE 857
+++V CPHCG++ K + +G+ CE+C
Sbjct: 221 GDQRRFYVPCPHCGEEQQLKFGEKSGPRGLKDTPAEAAFIQCEHCGCV 268
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 30.1 bits (67), Expect = 6.8
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 21/96 (21%)
Query: 825 KFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHM-------RVHTN-- 873
K E + LK + K Y C C+K++ N L+ HM ++H N
Sbjct: 326 KLAHGGERNIDTPSRMLKVKDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPS 385
Query: 874 ----------EKPYKCKDCGAAFNHNVSLKNHKNSS 899
+KPY+C+ C + + LK H+ S
Sbjct: 386 PEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRKHS 421
>gnl|CDD|223430 COG0353, RecR, Recombinational DNA repair protein (RecF pathway)
[DNA replication, recombination, and repair].
Length = 198
Score = 29.1 bits (66), Expect = 8.9
Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 789 KEKKICDICSAE--------VVH-----LAIHKKHSHSGQYHV 818
E CDICS E VV LA+ K G YHV
Sbjct: 64 TESDPCDICSDESRDKSQLCVVEEPKDVLALEKTGEFRGLYHV 106
>gnl|CDD|234471 TIGR04104, cxxc_20_cxxc, cxxc_20_cxxc protein. This small,
uncommon, poorly conserved protein is found primarily in
the Firmicutes. It features are pair of CxxC motifs
separated by about 20 amino acids, followed by a highly
hydrophobic region of about 45 amino acids. It has no
conserved gene neighborhood, and its function is
unknown.
Length = 94
Score = 27.7 bits (62), Expect = 9.0
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 850 ICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGA 884
IC+ C+++F++ L+ + +P KC +CG
Sbjct: 2 ICKNCNEKFSYKELLKSLFSL---YRPIKCPNCGT 33
>gnl|CDD|226202 COG3677, COG3677, Transposase and inactivated derivatives [DNA
replication, recombination, and repair].
Length = 129
Score = 28.5 bits (64), Expect = 9.3
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 787 KRKEKKICDICSAEVVHLAIHKKHSHSGQYHVCPHCGKKFTRK 829
+ K C C + V Q + C CG FT +
Sbjct: 26 MQITKVNCPRCKSSNVV--KIGGIRRGHQRYKCKSCGSTFTVE 66
>gnl|CDD|234616 PRK00076, recR, recombination protein RecR; Reviewed.
Length = 196
Score = 28.9 bits (66), Expect = 10.0
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 13/42 (30%)
Query: 790 EKKICDICSAE--------VVH-----LAIHKKHSHSGQYHV 818
E+ C+ICS VV LAI + + G YHV
Sbjct: 64 EQDPCEICSDPRRDQSLICVVESPADVLAIERTGEYRGLYHV 105
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.135 0.437
Gapped
Lambda K H
0.267 0.0804 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 48,941,277
Number of extensions: 4586186
Number of successful extensions: 5517
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5474
Number of HSP's successfully gapped: 146
Length of query: 1000
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 894
Effective length of database: 6,236,078
Effective search space: 5575053732
Effective search space used: 5575053732
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (28.3 bits)