RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15135
(1000 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 102 bits (256), Expect = 6e-25
Identities = 67/238 (28%), Positives = 91/238 (38%), Gaps = 64/238 (26%)
Query: 664 FRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYKCV-CGDG 722
+ A+ E P C CGK+F ++L H RTH E+ YKC CG
Sbjct: 3 EFGSSSSVAQ-AALEPGEKPYA---CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKS 58
Query: 723 FNFNVSLKVHMAKCAFYLKSLEKEGESDHGG---YETSSLCYHCGYYSKNRSTLKNHVRV 779
F+ L H + H G Y+ C CG R+ L+ H R
Sbjct: 59 FSDKKDLTRH---------------QRTHTGEKPYK----CPECGKSFSQRANLRAHQRT 99
Query: 780 EHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQY-HVCPHCGKKFTRKAELQLHIKG 838
H+G+ + CP CGK F++ A L+ H
Sbjct: 100 --------------------------------HTGEKPYACPECGKSFSQLAHLRAH--- 124
Query: 839 IHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
H EK Y C C K F+ + L H R HT EKPYKC +CG +F+ +L H+
Sbjct: 125 -QRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQ 181
Score = 60.5 bits (148), Expect = 1e-10
Identities = 59/230 (25%), Positives = 85/230 (36%), Gaps = 61/230 (26%)
Query: 91 NLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLK 148
+ E P + C C K F R+ L H + H E P + C CGK+F K
Sbjct: 8 SSVAQAALEPGEKP-YACPECGKSFSRSDHLAEH-QRTHTGEKPYK---CPECGKSFSDK 62
Query: 149 EYLRRHMRTHRVERKYNGFESAALCFICG--FYHKHKKMIYRHIKEHIEPKKQEKKVCDI 206
+ L RH RTH E+ Y C CG F +
Sbjct: 63 KDLTRHQRTHTGEKPYK-------CPECGKSFSQR------------------------- 90
Query: 207 CSAEVIHLGTHQKVAHSGVT-YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCN 265
+L HQ+ H+G Y C C F+++ + H +T H EK + C C
Sbjct: 91 -----ANLRAHQRT-HTGEKPYACPECGKSFSQLAHLRAHQRT----HTGEKPYKCPECG 140
Query: 266 KEFPFQGYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTFTNKHLFRNHK 315
K F + L+ H +TH G P Y C +C +F+ + H+
Sbjct: 141 KSFSREDNLHTHQRTHT--GEKP-------YKCPECGKSFSRRDALNVHQ 181
Score = 59.4 bits (145), Expect = 4e-10
Identities = 65/265 (24%), Positives = 87/265 (32%), Gaps = 83/265 (31%)
Query: 445 FTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTA 504
+ E+ + C C K F +L H R H+ + PYKC
Sbjct: 3 EFGSSSSVAQ----AALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGE----KPYKCPE 54
Query: 505 CNAAFNTKSALNVHRKTCPNLELLNRDLLPNQTGTDDEKKLEQKEMAKKPTVTEPAGEEA 564
C +F+ K L H++T TG +KP
Sbjct: 55 CGKSFSDKKDLTRHQRT--------------HTG-------------EKP---------- 77
Query: 565 FTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGGGQT 624
+ C C F + L H RT EKP C C K F+ A L H ++ H G
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYA---CPECGKSFSQLAHLRAH-QRTHTG--- 130
Query: 625 DYVREKEVCEICSARVVNLAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPE 684
EK P + C C K F R L H + H E P
Sbjct: 131 ----EK---------------------P--YKCPECGKSFSREDNLHTH-QRTHTGEKPY 162
Query: 685 ERPRCEVCGKTFGLKEYLRRHMRTH 709
+ C CGK+F ++ L H RTH
Sbjct: 163 K---CPECGKSFSRRDALNVHQRTH 184
Score = 58.2 bits (142), Expect = 8e-10
Identities = 55/173 (31%), Positives = 70/173 (40%), Gaps = 39/173 (22%)
Query: 561 GEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHG 620
GE+ + C C F + L H RT EKP K C C K F+ + LT H ++ H
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYK---CPECGKSFSDKKDLTRH-QRTHT 73
Query: 621 GGQTDYVREKEVCEICSARVVNLAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVHLT 680
G EK P + C C K F + LR H + H
Sbjct: 74 G-------EK---------------------P--YKCPECGKSFSQRANLRAHQR-THTG 102
Query: 681 ETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
E P C CGK+F +LR H RTH E+ YKC CG F+ +L H
Sbjct: 103 EKPYA---CPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH 152
Score = 57.8 bits (141), Expect = 1e-09
Identities = 55/194 (28%), Positives = 75/194 (38%), Gaps = 50/194 (25%)
Query: 422 HLQQHQKAAHSGVC-YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFM 480
HL +HQ+ H+G Y C CGK F+ K +L H H E+ + C C K F
Sbjct: 36 HLAEHQRT-HTGEKPYKCPECGKSFSDKKDLTRH----QRTHTGEKPYKCPECGKSFSQR 90
Query: 481 KYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKTCPNLELLNRDLLPNQTGTD 540
L+ H R H+ + PY C C +F+ + L H++T TG
Sbjct: 91 ANLRAHQRTHTGE----KPYACPECGKSFSQLAHLRAHQRT--------------HTG-- 130
Query: 541 DEKKLEQKEMAKKPTVTEPAGEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFV 600
+KP + C C F + L H RT EKP K C
Sbjct: 131 -----------EKP----------YKCPECGKSFSREDNLHTHQRTHTGEKPYK---CPE 166
Query: 601 CAKVFATRATLTLH 614
C K F+ R L +H
Sbjct: 167 CGKSFSRRDALNVH 180
Score = 55.9 bits (136), Expect = 6e-09
Identities = 58/196 (29%), Positives = 77/196 (39%), Gaps = 52/196 (26%)
Query: 91 NLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLK 148
+LAEH+ H E P + C C K F ++L H + H E P + C CGK+F +
Sbjct: 36 HLAEHQRTHTGEKP-YKCPECGKSFSDKKDLTRH-QRTHTGEKPYK---CPECGKSFSQR 90
Query: 149 EYLRRHMRTHRVERKYNGFESAALCFICG--FYHKHKKMIYRHIKEHIEPKKQEKKVCDI 206
LR H RTH E+ Y C CG F
Sbjct: 91 ANLRAHQRTHTGEKPYA-------CPECGKSFSQLA------------------------ 119
Query: 207 CSAEVIHLGTHQKVAHSGV-TYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCN 265
HL HQ+ H+G Y C C F+R ++ H +T H EK + C C
Sbjct: 120 ------HLRAHQRT-HTGEKPYKCPECGKSFSREDNLHTHQRT----HTGEKPYKCPECG 168
Query: 266 KEFPFQGYLNKHMKTH 281
K F + LN H +TH
Sbjct: 169 KSFSRRDALNVHQRTH 184
Score = 55.9 bits (136), Expect = 6e-09
Identities = 52/194 (26%), Positives = 67/194 (34%), Gaps = 50/194 (25%)
Query: 422 HLQQHQKAAHSG-VCYDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFM 480
G Y C CGK F+R L H H E+ + C C K F
Sbjct: 8 SSVAQAAL-EPGEKPYACPECGKSFSRSDHLAEH----QRTHTGEKPYKCPECGKSFSDK 62
Query: 481 KYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKTCPNLELLNRDLLPNQTGTD 540
K L RH R H+ + PYKC C +F+ ++ L H++T TG
Sbjct: 63 KDLTRHQRTHTGE----KPYKCPECGKSFSQRANLRAHQRT--------------HTG-- 102
Query: 541 DEKKLEQKEMAKKPTVTEPAGEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFV 600
+KP + C C F + L H RT EKP K C
Sbjct: 103 -----------EKP----------YACPECGKSFSQLAHLRAHQRTHTGEKPYK---CPE 138
Query: 601 CAKVFATRATLTLH 614
C K F+ L H
Sbjct: 139 CGKSFSREDNLHTH 152
Score = 55.5 bits (135), Expect = 8e-09
Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 422 HLQQHQKAAHSGVC-YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFM 480
+L+ HQ+ H+G Y C CGK F++ A L H H E+ + C C K F
Sbjct: 92 NLRAHQRT-HTGEKPYACPECGKSFSQLAHLRAH----QRTHTGEKPYKCPECGKSFSRE 146
Query: 481 KYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
L H R H+ + PYKC C +F+ + ALNVH++T
Sbjct: 147 DNLHTHQRTHTGE----KPYKCPECGKSFSRRDALNVHQRT 183
Score = 53.6 bits (130), Expect = 3e-08
Identities = 49/206 (23%), Positives = 69/206 (33%), Gaps = 58/206 (28%)
Query: 113 FRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYNGFESAAL 172
+ A+ E P C CGK+F ++L H RTH E+ Y
Sbjct: 3 EFGSSSSVAQ-AALEPGEKPYA---CPECGKSFSRSDHLAEHQRTHTGEKPYK------- 51
Query: 173 CFICG--FYHKHKKMIYRHIKEHIEPKKQEKKVCDICSAEVIHLGTHQKVAHSGVT-YNC 229
C CG F K L HQ+ H+G Y C
Sbjct: 52 CPECGKSFSDKK------------------------------DLTRHQRT-HTGEKPYKC 80
Query: 230 KFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPG 289
C F++ + H +T H EK + C C K F +L H +TH G P
Sbjct: 81 PECGKSFSQRANLRAHQRT----HTGEKPYACPECGKSFSQLAHLRAHQRTHT--GEKP- 133
Query: 290 GGGHVTYTCKQCNLTFTNKHLFRNHK 315
Y C +C +F+ + H+
Sbjct: 134 ------YKCPECGKSFSREDNLHTHQ 153
Score = 50.9 bits (123), Expect = 3e-07
Identities = 50/154 (32%), Positives = 66/154 (42%), Gaps = 22/154 (14%)
Query: 11 EEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGG 70
E+ + C C F L H RT EKP K C C K F+ RA L H ++ H G
Sbjct: 47 EKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK---CPECGKSFSQRANLRAH-QRTHTG 102
Query: 71 GQTDYVREK----EVCEICSARVVNLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVK 124
EK C +++ +L H+ H E P + C C K F R L H +
Sbjct: 103 -------EKPYACPECGKSFSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTH-Q 153
Query: 125 AVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTH 158
H E P + C CGK+F ++ L H RTH
Sbjct: 154 RTHTGEKPYK---CPECGKSFSRRDALNVHQRTH 184
Score = 49.7 bits (120), Expect = 7e-07
Identities = 52/157 (33%), Positives = 69/157 (43%), Gaps = 22/157 (14%)
Query: 14 FTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGGGQT 73
+ C C F + L H RT EKP K C C K F+ + LT H ++ H G
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYK---CPECGKSFSDKKDLTRH-QRTHTG--- 74
Query: 74 DYVREKE-VCEICS---ARVVNLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVH 127
EK C C ++ NL H+ H E P + C C K F + LR H + H
Sbjct: 75 ----EKPYKCPECGKSFSQRANLRAHQRTHTGEKP-YACPECGKSFSQLAHLRAH-QRTH 128
Query: 128 LTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E P + C CGK+F ++ L H RTH E+ Y
Sbjct: 129 TGEKPYK---CPECGKSFSREDNLHTHQRTHTGEKPY 162
Score = 46.3 bits (111), Expect = 1e-05
Identities = 42/142 (29%), Positives = 54/142 (38%), Gaps = 22/142 (15%)
Query: 29 LCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGGGQTDYVREK----EVCEI 84
EKP C C K F+ L H ++ H G EK C
Sbjct: 9 SVAQAALEPGEKPYA---CPECGKSFSRSDHLAEH-QRTHTG-------EKPYKCPECGK 57
Query: 85 CSARVVNLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCG 142
+ +L H+ H E P + C C K F + LR H + H E P C CG
Sbjct: 58 SFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAHQR-THTGEKPYA---CPECG 112
Query: 143 KTFGLKEYLRRHMRTHRVERKY 164
K+F +LR H RTH E+ Y
Sbjct: 113 KSFSQLAHLRAHQRTHTGEKPY 134
Score = 37.0 bits (87), Expect = 0.012
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 422 HLQQHQKAAHSGV-CYDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFM 480
HL+ HQ+ H+G Y C CGK F+R+ L+ H H E+ + C C K F
Sbjct: 120 HLRAHQRT-HTGEKPYKCPECGKSFSREDNLHTH----QRTHTGEKPYKCPECGKSFSRR 174
Query: 481 KYLKRHLRVH 490
L H R H
Sbjct: 175 DALNVHQRTH 184
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 82.9 bits (206), Expect = 3e-19
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 803 HLAIHKKHSHSGQY-HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFY 861
+ + + +C CG+ FT+ L +H + H E+ Y C+ CHK F
Sbjct: 4 GSSGGRL-PSKTKKEFICKFCGRHFTKSYNLLIH-ERTHTD---ERPYTCDICHKAFRRQ 58
Query: 862 NYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
++LR H +H+ EKP+KC++CG F + +L HK
Sbjct: 59 DHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHK 93
Score = 61.7 bits (151), Expect = 1e-11
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 803 HLAIHKKHSHSGQY-HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFY 861
+L IH++ +H+ + + C C K F R+ L+ H + IH K EK + C+ C K F
Sbjct: 32 NLLIHER-THTDERPYTCDICHKAFRRQDHLRDH-RYIHSK---EKPFKCQECGKGFCQS 86
Query: 862 NYLRRHMRVHTNEKPYKC 879
L H +H
Sbjct: 87 RTLAVHKTLHMQTSSPTA 104
Score = 56.3 bits (137), Expect = 6e-10
Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 10/101 (9%)
Query: 422 HLQQHQKAAHSGV-CYDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFM 480
+ + C FCG+ FT+ L IH H E+ + C C+K F
Sbjct: 4 GSSGGRLP-SKTKKEFICKFCGRHFTKSYNLLIH----ERTHTDERPYTCDICHKAFRRQ 58
Query: 481 KYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+L+ H +HS + P+KC C F L VH+
Sbjct: 59 DHLRDHRYIHSKE----KPFKCQECGKGFCQSRTLAVHKTL 95
Score = 49.7 bits (120), Expect = 1e-07
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 642 NLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLK 699
NL H+ H E P +TC+ C K FRR LR+H + +H E P + C+ CGK F
Sbjct: 32 NLLIHERTHTDERP-YTCDICHKAFRRQDHLRDH-RYIHSKEKPFK---CQECGKGFCQS 86
Query: 700 EYLRRHMRTHRVERKYKC 717
L H H
Sbjct: 87 RTLAVHKTLHMQTSSPTA 104
Score = 45.9 bits (110), Expect = 3e-06
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
++ C+ CG+ F L H RTH ER Y C +C F L+ H
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
Score = 44.3 bits (106), Expect = 9e-06
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 91 NLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLK 148
NL H+ H E P +TC+ C K FRR LR+H + +H E P + C+ CGK F
Sbjct: 32 NLLIHERTHTDERP-YTCDICHKAFRRQDHLRDH-RYIHSKEKPFK---CQECGKGFCQS 86
Query: 149 EYLRRHMRTHRVERKY 164
L H H
Sbjct: 87 RTLAVHKTLHMQTSSP 102
Score = 40.1 bits (95), Expect = 3e-04
Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 10/84 (11%)
Query: 422 HLQQHQKAAHSGVC-YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFM 480
+L H++ H+ Y C C K F R+ L H H E+ F CQ C K F
Sbjct: 32 NLLIHERT-HTDERPYTCDICHKAFRRQDHLRDH----RYIHSKEKPFKCQECGKGFCQS 86
Query: 481 KYLKRHLRVHSNDVQVPHPYKCTA 504
+ L H +H +
Sbjct: 87 RTLAVHKTLHMQT----SSPTAAS 106
Score = 39.3 bits (93), Expect = 5e-04
Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 15/104 (14%)
Query: 213 HLGTHQKVAHSGVT-YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQ 271
+ + CKFC FT+ + IH +T H E+ + C C+K F Q
Sbjct: 4 GSSGGRLP-SKTKKEFICKFCGRHFTKSYNLLIHERT----HTDERPYTCDICHKAFRRQ 58
Query: 272 GYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTFTNKHLFRNHK 315
+L H H+ P + C++C F HK
Sbjct: 59 DHLRDHRYIHS--KEKP-------FKCQECGKGFCQSRTLAVHK 93
Score = 33.6 bits (78), Expect = 0.053
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
++ C+ CG+ F L H RTH ER Y
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPY 46
Score = 32.8 bits (76), Expect = 0.11
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 213 HLGTHQKVAHSGVT-YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQ 271
+L H++ H+ Y C C F R + H H EK F CQ C K F
Sbjct: 32 NLLIHERT-HTDERPYTCDICHKAFRRQDHLRDHRYI----HSKEKPFKCQECGKGFCQS 86
Query: 272 GYLNKHMKTH 281
L H H
Sbjct: 87 RTLAVHKTLH 96
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 82.9 bits (206), Expect = 4e-19
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 803 HLAIHKKHSHSGQY-HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFY 861
+L +H + H+G+ CP CGK + RK L H + ++ E+ + C C + F
Sbjct: 22 YLKVHNR-KHTGEKPFECPKCGKCYFRKENLLEHEARNCM-NRSEQVFTCSVCQETFRRR 79
Query: 862 NYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
LR HM HT E PYKC C F L++H
Sbjct: 80 MELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 66.4 bits (163), Expect = 3e-13
Identities = 19/50 (38%), Positives = 25/50 (50%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
C CHK+F YL+ H R HT EKP++C CG + +L H
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
Score = 58.7 bits (143), Expect = 1e-10
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 422 HLQQHQKAAHSGVC-YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFM 480
+L+ H + H+G ++C CGK + RK L H + ++ EQ F C C + F
Sbjct: 22 YLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARNCM-NRSEQVFTCSVCQETFRRR 79
Query: 481 KYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVH 518
L+ H+ H+ + PYKC++C+ F K L H
Sbjct: 80 MELRLHMVSHTGE----MPYKCSSCSQQFMQKKDLQSH 113
Score = 54.0 bits (131), Expect = 6e-09
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 11/120 (9%)
Query: 760 CYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHS--HSGQY- 816
C C ++ LK H R GE K E C C +L H+ + + +
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGE---KPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 817 HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHM-RVHTNEK 875
C C + F R+ EL+LH + H E Y C C ++F L+ HM ++H+
Sbjct: 67 FTCSVCQETFRRRMELRLH----MVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 54.0 bits (131), Expect = 6e-09
Identities = 33/161 (20%), Positives = 51/161 (31%), Gaps = 52/161 (32%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCV-CGDGFNFNVSLKVHMAKCAFYLKS 742
C C K F K YL+ H R H E+ ++C CG + +L H A+
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCM---- 60
Query: 743 LEKEGESDHGG---YETSSLCYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSA 799
+ + C C + R L+ H+ GE K
Sbjct: 61 --------NRSEQVFT----CSVCQETFRRRMELRLHMVSHTGEMPYK------------ 96
Query: 800 EVVHLAIHKKHSHSGQYHVCPHCGKKFTRKAELQLHIKGIH 840
C C ++F +K +LQ H+ +H
Sbjct: 97 -------------------CSSCSQQFMQKKDLQSHMIKLH 118
Score = 51.0 bits (123), Expect = 7e-08
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 13/90 (14%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQ 495
+C C K F K L +H + KH E+ F C C K + + L H +
Sbjct: 8 VECPTCHKKFLSKYYLKVH----NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCM--- 60
Query: 496 VPH----PYKCTACNAAFNTKSALNVHRKT 521
+ + C+ C F + L +H +
Sbjct: 61 --NRSEQVFTCSVCQETFRRRMELRLHMVS 88
Score = 46.7 bits (112), Expect = 2e-06
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 12/104 (11%)
Query: 213 HLGTHQKVAHSGVT-YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQ 271
+L H + H+G + C C + R + H + + E+ F C C + F +
Sbjct: 22 YLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARNCM-NRSEQVFTCSVCQETFRRR 79
Query: 272 GYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTFTNKHLFRNHK 315
L HM +H G P Y C C+ F K ++H
Sbjct: 80 MELRLHMVSHT--GEMP-------YKCSSCSQQFMQKKDLQSHM 114
Score = 46.0 bits (110), Expect = 5e-06
Identities = 32/155 (20%), Positives = 51/155 (32%), Gaps = 48/155 (30%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICG--FYHKHKKMIYRHI 190
C C K F K YL+ H R H E+ + C CG ++ K
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFE-------CPKCGKCYFRKE-------- 49
Query: 191 KEHIEPKKQEKKVCDICSAEVIHLGTHQKVA--HSGVT-YNCKFCSMKFTRVGQMNIHIK 247
+L H+ + + C C F R ++ +H+
Sbjct: 50 ----------------------NLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMV 87
Query: 248 TVHLKHMLEKKFVCQYCNKEFPFQGYLNKHM-KTH 281
+ H E + C C+++F + L HM K H
Sbjct: 88 S----HTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 45.6 bits (109), Expect = 6e-06
Identities = 39/152 (25%), Positives = 50/152 (32%), Gaps = 40/152 (26%)
Query: 561 GEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLH--IKQM 618
G C C F L H R EKP + C C K + + L H M
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFE---CPKCGKCYFRKENLLEHEARNCM 60
Query: 619 HGGGQTDYVREKEVCEICSARVVNLAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVH 678
+ E FTC C + FRR ELR H+ H
Sbjct: 61 NRS-----------------------------EQV-FTCSVCQETFRRRMELRLHMV-SH 89
Query: 679 LTETPEERPRCEVCGKTFGLKEYLRRHM-RTH 709
E P + C C + F K+ L+ HM + H
Sbjct: 90 TGEMPYK---CSSCSQQFMQKKDLQSHMIKLH 118
Score = 45.2 bits (108), Expect = 8e-06
Identities = 36/154 (23%), Positives = 55/154 (35%), Gaps = 41/154 (26%)
Query: 468 FVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKTCPNLEL 527
C C+K F YLK H R H+ + P++C C + K L H
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGE----KPFECPKCGKCYFRKENLLEH--------- 54
Query: 528 LNRDLLPNQTGTDDEKKLEQKEMAKKPTVTEPAGEEAFTCRICQAVFDKYVRLCGHLRTV 587
A+ E+ FTC +CQ F + + L H+ +
Sbjct: 55 ----------------------EARNCMNR---SEQVFTCSVCQETFRRRMELRLHMVSH 89
Query: 588 HNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGG 621
E P K C C++ F + L H+ ++H G
Sbjct: 90 TGEMPYK---CSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 43.3 bits (103), Expect = 4e-05
Identities = 38/151 (25%), Positives = 49/151 (32%), Gaps = 40/151 (26%)
Query: 11 EEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLH--IKQMH 68
C C F L H R EKP + C C K + + L H M+
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFE---CPKCGKCYFRKENLLEHEARNCMN 61
Query: 69 GGGQTDYVREKEVCEICSARVVNLAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVHL 128
E FTC C + FRR ELR H+ H
Sbjct: 62 RS-----------------------------EQV-FTCSVCQETFRRRMELRLHMV-SHT 90
Query: 129 TETPEERPRCEVCGKTFGLKEYLRRHM-RTH 158
E P + C C + F K+ L+ HM + H
Sbjct: 91 GEMPYK---CSSCSQQFMQKKDLQSHMIKLH 118
Score = 40.6 bits (96), Expect = 3e-04
Identities = 6/26 (23%), Positives = 8/26 (30%)
Query: 871 HTNEKPYKCKDCGAAFNHNVSLKNHK 896
+ +C C F LK H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHN 27
Score = 40.2 bits (95), Expect = 5e-04
Identities = 34/140 (24%), Positives = 43/140 (30%), Gaps = 47/140 (33%)
Query: 91 NLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNH--VKAVHLTETPEERPRCEVCGKTFG 146
L H H E P F C C K + R + L H ++ +E C VC +TF
Sbjct: 22 YLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEHEARNCMNRSEQVFT---CSVCQETFR 77
Query: 147 LKEYLRRHMRTHRVERKYNGFESAALCFICG--FYHKHKKMIYRHIKEHIEPKKQEKKVC 204
+ LR HM +H E Y C C F K
Sbjct: 78 RRMELRLHMVSHTGEMPYK-------CSSCSQQFMQKK---------------------- 108
Query: 205 DICSAEVIHLGTHQKVAHSG 224
L +H HSG
Sbjct: 109 --------DLQSHMIKLHSG 120
Score = 35.2 bits (82), Expect = 0.023
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 9/59 (15%)
Query: 256 EKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTFTNKHLFRNH 314
C C+K+F + YL H + H G P + C +C + K H
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVHNRKHT--GEKP-------FECPKCGKCYFRKENLLEH 54
Score = 32.1 bits (74), Expect = 0.26
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 422 HLQQHQKAAHSGVC-YDCTFCGKGFTRKAELNIHIKAVH 459
L+ H + H+G Y C+ C + F +K +L H+ +H
Sbjct: 81 ELRLHMVS-HTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 29.0 bits (66), Expect = 3.0
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 11 EEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGG 70
E+ FTC +CQ F + + L H+ + E P K C C++ F + L H+ ++H G
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYK---CSSCSQQFMQKKDLQSHMIKLHSG 120
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 79.8 bits (198), Expect = 3e-18
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 819 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYK 878
C CGK F+RK +L+ H++ H K Y C+ C + L +H+R+H++E+P+K
Sbjct: 11 CEVCGKCFSRKDKLKTHMR----CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 879 CKDCGAAFNHNVSLKNHK 896
C+ C A ++ L H
Sbjct: 67 CQICPYASRNSSQLTVHL 84
Score = 68.6 bits (169), Expect = 3e-14
Identities = 22/51 (43%), Positives = 27/51 (52%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
+ CE C K F+ + L+ HMR HT KPYKCK C A + SL H
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL 56
Score = 63.6 bits (156), Expect = 1e-12
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 803 HLAIHKKHSHSGQ--YHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTF 860
L H + H+G Y C C + L H++ H E+ + C+ C
Sbjct: 23 KLKTHMR-CHTGVKPYK-CKTCDYAAADSSSLNKHLR----IHSDERPFKCQICPYASRN 76
Query: 861 YNYLRRHMRVHTNEKPYKC 879
+ L H+R HT +
Sbjct: 77 SSQLTVHLRSHTGDSGPSS 95
Score = 55.1 bits (134), Expect = 1e-09
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 655 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERK 714
CE C K F R +L+ H H P + C+ C L +H+R H ER
Sbjct: 9 HKCEVCGKCFSRKDKLKTH-MRCHTGVKPYK---CKTCDYAAADSSSLNKHLRIHSDERP 64
Query: 715 YKC-VCGDGFNFNVSLKVHM 733
+KC +C + L VH+
Sbjct: 65 FKCQICPYASRNSSQLTVHL 84
Score = 54.7 bits (133), Expect = 2e-09
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQ 495
+ C CGK F+RK +L H++ H + + C+ C+ L +HLR+HS++
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRC----HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE-- 62
Query: 496 VPHPYKCTACNAAFNTKSALNVHRKT 521
P+KC C A S L VH ++
Sbjct: 63 --RPFKCQICPYASRNSSQLTVHLRS 86
Score = 51.3 bits (124), Expect = 3e-08
Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 24/104 (23%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKC-VCGDGFNFNVSLKVHMAKCAFYLKS 742
P +CEVCGK F K+ L+ HMR H + YKC C + SL H+
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI------- 58
Query: 743 LEKEGESDHGG---YETSSLCYHCGYYSKNRSTLKNHVRVEHGE 783
H ++ C C Y S+N S L H+R G+
Sbjct: 59 --------HSDERPFK----CQICPYASRNSSQLTVHLRSHTGD 90
Score = 49.7 bits (120), Expect = 9e-08
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 642 NLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLK 699
L H CH P + C+ C + L H +H E P + C++C
Sbjct: 23 KLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKH-LRIHSDERPFK---CQICPYASRNS 77
Query: 700 EYLRRHMRTHRVERKYKC 717
L H+R+H +
Sbjct: 78 SQLTVHLRSHTGDSGPSS 95
Score = 44.3 bits (106), Expect = 8e-06
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 91 NLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLK 148
L H CH P + C+ C + L H +H E P + C++C
Sbjct: 23 KLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKH-LRIHSDERPFK---CQICPYASRNS 77
Query: 149 EYLRRHMRTHRVERKY 164
L H+R+H +
Sbjct: 78 SQLTVHLRSHTGDSGP 93
Score = 42.0 bits (100), Expect = 5e-05
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 422 HLQQHQKAAHSGVC-YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFM 480
L+ H + H+GV Y C C + LN H++ H E+ F CQ C
Sbjct: 23 KLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHLR----IHSDERPFKCQICPYASRNS 77
Query: 481 KYLKRHLRVHSNDVQVPHPYKC 502
L HLR H+ D
Sbjct: 78 SQLTVHLRSHTGD----SGPSS 95
Score = 40.9 bits (97), Expect = 1e-04
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 104 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERK 163
CE C K F R +L+ H H P + C+ C L +H+R H ER
Sbjct: 9 HKCEVCGKCFSRKDKLKTH-MRCHTGVKPYK---CKTCDYAAADSSSLNKHLRIHSDERP 64
Query: 164 Y 164
+
Sbjct: 65 F 65
Score = 38.2 bits (90), Expect = 0.001
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICGFYHKHKKMIYRHIKE 192
P +CEVCGK F K+ L+ HMR H + Y C C + + +H++
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYK-------CKTCDYAAADSSSLNKHLRI 58
Query: 193 HIEPKKQEKKVCDICSAEVIHLGTHQKVAHSG 224
H + + + ++C S L H + H+G
Sbjct: 59 HSDERPFKCQICPYASRNSSQLTVHLRS-HTG 89
Score = 38.2 bits (90), Expect = 0.001
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 227 YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMKTHNHHGN 286
+ C+ C F+R ++ H++ H K + C+ C+ LNKH++ H+
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRC----HTGVKPYKCKTCDYAAADSSSLNKHLRIHS--DE 62
Query: 287 GPGGGGHVTYTCKQCNLTFTNKHLFRNHK 315
P + C+ C N H
Sbjct: 63 RP-------FKCQICPYASRNSSQLTVHL 84
Score = 37.4 bits (88), Expect = 0.002
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 213 HLGTHQKVAHSGVT-YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQ 271
L TH + H+GV Y CK C +N H++ H E+ F CQ C
Sbjct: 23 KLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHLRI----HSDERPFKCQICPYASRNS 77
Query: 272 GYLNKHMKTH 281
L H+++H
Sbjct: 78 SQLTVHLRSH 87
Score = 33.6 bits (78), Expect = 0.055
Identities = 26/116 (22%), Positives = 36/116 (31%), Gaps = 40/116 (34%)
Query: 499 PYKCTACNAAFNTKSALNVHRKTCPNLELLNRDLLPNQTGTDDEKKLEQKEMAKKPTVTE 558
P+KC C F+ K L H + TG KP
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRC--------------HTG-------------VKP---- 36
Query: 559 PAGEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLH 614
+ C+ C L HLR +E+P K C +C + LT+H
Sbjct: 37 ------YKCKTCDYAAADSSSLNKHLRIHSDERPFK---CQICPYASRNSSQLTVH 83
Score = 32.4 bits (75), Expect = 0.11
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 9/60 (15%)
Query: 256 EKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTFTNKHLFRNHK 315
C+ C K F + L HM+ H G P Y CK C+ + H
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMRCHT--GVKP-------YKCKTCDYAAADSSSLNKHL 56
Score = 27.4 bits (62), Expect = 8.3
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 561 GEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLH 614
C +C F + +L H+R KP K C C A ++L H
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYK---CKTCDYAAADSSSLNKH 55
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 78.2 bits (194), Expect = 7e-18
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 819 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYK 878
C CGK F R + L H L H + Y C+YC K F + +++H +HT EKP+K
Sbjct: 4 CKICGKSFKRSSTLSTH----LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 879 CKDCGAAFNHNVSLKNHK 896
C+ CG AF+ + +L H
Sbjct: 60 CQVCGKAFSQSSNLITHS 77
Score = 61.7 bits (151), Expect = 4e-12
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 848 TYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
++ C+ C K F + L H+ +H++ +PY C+ CG F+ +K H
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT 49
Score = 53.6 bits (130), Expect = 3e-09
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 655 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERK 714
F C+ C K F+R+ L H +H P C+ CGK F K +++H H E+
Sbjct: 2 FDCKICGKSFKRSSTLSTH-LLIHSDTRPYP---CQYCGKRFHQKSDMKKHTFIHTGEKP 57
Query: 715 YKC-VCGDGFNFNVSLKVHM 733
+KC VCG F+ + +L H
Sbjct: 58 HKCQVCGKAFSQSSNLITHS 77
Score = 52.8 bits (128), Expect = 6e-09
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQ 495
+DC CGK F R + L+ H L H + + CQYC K F +K+H +H+ +
Sbjct: 2 FDCKICGKSFKRSSTLSTH----LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGE-- 55
Query: 496 VPHPYKCTACNAAFNTKSALNVHRKT 521
P+KC C AF+ S L H +
Sbjct: 56 --KPHKCQVCGKAFSQSSNLITHSRK 79
Score = 45.1 bits (108), Expect = 4e-06
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 803 HLAIHKKHSHSGQ--YHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTF 860
L+ H HS Y C +CGK+F +K++++ H IH EK + C+ C K F+
Sbjct: 16 TLSTHLL-IHSDTRPY-PCQYCGKRFHQKSDMKKHTF-IHTG---EKPHKCQVCGKAFSQ 69
Query: 861 YNYLRRHMRVHT 872
+ L H R HT
Sbjct: 70 SSNLITHSRKHT 81
Score = 43.6 bits (104), Expect = 1e-05
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 91 NLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLK 148
L+ H L H P + C+YC K F + +++ H +H E P + C+VCGK F
Sbjct: 16 TLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKH-TFIHTGEKPHK---CQVCGKAFSQS 70
Query: 149 EYLRRHMRTH 158
L H R H
Sbjct: 71 SNLITHSRKH 80
Score = 43.6 bits (104), Expect = 1e-05
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 642 NLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLK 699
L+ H L H P + C+YC K F + +++ H +H E P + C+VCGK F
Sbjct: 16 TLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKH-TFIHTGEKPHK---CQVCGKAFSQS 70
Query: 700 EYLRRHMRTH 709
L H R H
Sbjct: 71 SNLITHSRKH 80
Score = 41.3 bits (98), Expect = 6e-05
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 104 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERK 163
F C+ C K F+R+ L H +H P C+ CGK F K +++H H E+
Sbjct: 2 FDCKICGKSFKRSSTLSTH-LLIHSDTRPYP---CQYCGKRFHQKSDMKKHTFIHTGEKP 57
Query: 164 Y 164
+
Sbjct: 58 H 58
Score = 36.2 bits (85), Expect = 0.004
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 13/90 (14%)
Query: 226 TYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMKTHNHHG 285
+++CK C F R ++ H+ H + + CQYC K F + + KH H G
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLI----HSDTRPYPCQYCGKRFHQKSDMKKHTFIHT--G 54
Query: 286 NGPGGGGHVTYTCKQCNLTFTNKHLFRNHK 315
P + C+ C F+ H
Sbjct: 55 EKP-------HKCQVCGKAFSQSSNLITHS 77
Score = 33.5 bits (78), Expect = 0.043
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 213 HLGTHQKVAHSGVT-YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQ 271
L TH + HS Y C++C +F + M H H EK CQ C K F
Sbjct: 16 TLSTHLLI-HSDTRPYPCQYCGKRFHQKSDMKKHTFI----HTGEKPHKCQVCGKAFSQS 70
Query: 272 GYLNKHMKTH 281
L H + H
Sbjct: 71 SNLITHSRKH 80
Score = 26.6 bits (60), Expect = 9.9
Identities = 23/115 (20%), Positives = 34/115 (29%), Gaps = 40/115 (34%)
Query: 500 YKCTACNAAFNTKSALNVHRKTCPNLELLNRDLLPNQTGTDDEKKLEQKEMAKKPTVTEP 559
+ C C +F S L+ H + T +P
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLI--------------HSDT-------------RP----- 29
Query: 560 AGEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLH 614
+ C+ C F + + H EKP K C VC K F+ + L H
Sbjct: 30 -----YPCQYCGKRFHQKSDMKKHTFIHTGEKPHK---CQVCGKAFSQSSNLITH 76
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 78.0 bits (193), Expect = 1e-17
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 803 HLAIHKKHSHSGQY-HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFY 861
+ +H+G+ + C HC K F +K L +H K H + + ++C C K FT
Sbjct: 2 SSGSSGR-THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 862 NYLRRHMRVHTNEKPYKCKDCGAAF 886
N + RH + ++ G +
Sbjct: 61 NTMARHADNCAGPDGVEGENSGPSS 85
Score = 57.9 bits (141), Expect = 1e-10
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNE----KPYKCKDCGAAFNHNVSLKNHK 896
EK Y C +C K F L H + + + + C CG F ++ H
Sbjct: 13 EKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 55.2 bits (134), Expect = 9e-10
Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 6/86 (6%)
Query: 642 NLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERP-RCEVCGKTFGL 698
+ H E P + C +C K FR+ Q L H K + C CGKTF
Sbjct: 2 SSGSSGRTHTGEKP-YACSHCDKTFRQKQLLDMHFK-RYHDPNFVPAAFVCSKCGKTFTR 59
Query: 699 KEYLRRHMRTHRVERKYKCV-CGDGF 723
+ + RH + G
Sbjct: 60 RNTMARHADNCAGPDGVEGENSGPSS 85
Score = 49.8 bits (120), Expect = 8e-08
Identities = 12/33 (36%), Positives = 12/33 (36%)
Query: 864 LRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
R HT EKPY C C F L H
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHF 35
Score = 49.4 bits (119), Expect = 9e-08
Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 91 NLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERP-RCEVCGKTFGL 147
+ H E P + C +C K FR+ Q L H K + C CGKTF
Sbjct: 2 SSGSSGRTHTGEKP-YACSHCDKTFRQKQLLDMHFK-RYHDPNFVPAAFVCSKCGKTFTR 59
Query: 148 KEYLRRHMRTHRVERKY 164
+ + RH
Sbjct: 60 RNTMARHADNCAGPDGV 76
Score = 48.3 bits (116), Expect = 3e-07
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Query: 422 HLQQHQKAAHSG-VCYDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFM 480
+ H+G Y C+ C K F +K L++H K H + + FVC C K F
Sbjct: 2 SSGSSGRT-HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 481 KYLKRHLRVHSNDVQVPHPYKCTACNAAF 509
+ RH + P + +
Sbjct: 61 NTMARHADNCAG----PDGVEGENSGPSS 85
Score = 45.2 bits (108), Expect = 3e-06
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 465 EQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKTC 522
E+ + C +C+K F + L H + + + VP + C+ C F ++ + H C
Sbjct: 13 EKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNC 70
Score = 43.3 bits (103), Expect = 1e-05
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 11/94 (11%)
Query: 213 HLGTHQKVAHSGVT-YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQ 271
G+ + H+G Y C C F + +++H K H + + FVC C K F +
Sbjct: 2 SSGSSGRT-HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 272 GYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTF 305
+ +H G + +
Sbjct: 61 NTMARHADNCA--GPDG-------VEGENSGPSS 85
Score = 36.3 bits (85), Expect = 0.004
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 256 EKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTFTNKHLFRNHK 315
EK + C +C+K F + L+ H K + H + C +C TFT ++ H
Sbjct: 13 EKPYACSHCDKTFRQKQLLDMHFKRY--HDPNFVPA---AFVCSKCGKTFTRRNTMARHA 67
Score = 30.6 bits (70), Expect = 0.40
Identities = 23/118 (19%), Positives = 29/118 (24%), Gaps = 34/118 (28%)
Query: 29 LCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSAR 88
RT EKP C C K F + L +H + +
Sbjct: 3 SGSSGRTHTGEKPYA---CSHCDKTFRQKQLLDMH-FKRYHDPNF--------------- 43
Query: 89 VVNLAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFG 146
P F C C K F R + H E E G + G
Sbjct: 44 -----------VPAAFVCSKCGKTFTRRNTMARH-ADNCAGPDGVE---GENSGPSSG 86
Score = 30.6 bits (70), Expect = 0.40
Identities = 23/118 (19%), Positives = 29/118 (24%), Gaps = 34/118 (28%)
Query: 580 LCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSAR 639
RT EKP C C K F + L +H + +
Sbjct: 3 SGSSGRTHTGEKPYA---CSHCDKTFRQKQLLDMH-FKRYHDPNF--------------- 43
Query: 640 VVNLAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFG 697
P F C C K F R + H E E G + G
Sbjct: 44 -----------VPAAFVCSKCGKTFTRRNTMARH-ADNCAGPDGVE---GENSGPSSG 86
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 75.6 bits (187), Expect = 7e-17
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 821 HCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCK 880
C ++F++ L HI+ H +K + C C + F+ ++L H+R HT EKP+ C
Sbjct: 11 SCDRRFSQSGSLTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 881 DCGAAFNHNVSLKNHK 896
CG F + K H
Sbjct: 67 ICGRKFARSDERKRHT 82
Score = 54.0 bits (131), Expect = 2e-09
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 655 FTC--EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVE 712
+ C E C + F ++ L H++ T ++ +C +C + F ++L H+RTH E
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 713 RKYKC-VCGDGFNFNVSLKVHM 733
+ + C +CG F + K H
Sbjct: 61 KPFACDICGRKFARSDERKRHT 82
Score = 52.9 bits (128), Expect = 7e-09
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 803 HLAIHKKHSHSGQY-HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFY 861
L H + H+GQ C C + F+R L HI+ H EK + C+ C ++F
Sbjct: 21 SLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIR----THTGEKPFACDICGRKFARS 75
Query: 862 NYLRRHMRVHTNEK 875
+ +RH ++H +K
Sbjct: 76 DERKRHTKIHLRQK 89
Score = 52.5 bits (127), Expect = 1e-08
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 436 YDCTF--CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSND 493
Y C C + F++ L HI+ H ++ F C+ C ++F +L H+R H+ +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRI----HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 494 VQVPHPYKCTACNAAFNTKSALNVHRKT 521
P+ C C F H K
Sbjct: 61 ----KPFACDICGRKFARSDERKRHTKI 84
Score = 45.5 bits (109), Expect = 2e-06
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 91 NLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLK 148
+L H H + P F C C++ F R+ L H++ T T E+ C++CG+ F
Sbjct: 21 SLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIR----THTGEKPFACDICGRKFARS 75
Query: 149 EYLRRHMRTH 158
+ +RH + H
Sbjct: 76 DERKRHTKIH 85
Score = 45.5 bits (109), Expect = 2e-06
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 642 NLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLK 699
+L H H + P F C C++ F R+ L H++ T T E+ C++CG+ F
Sbjct: 21 SLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIR----THTGEKPFACDICGRKFARS 75
Query: 700 EYLRRHMRTH 709
+ +RH + H
Sbjct: 76 DERKRHTKIH 85
Score = 42.8 bits (102), Expect = 2e-05
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 15/91 (16%)
Query: 227 YNCKF--CSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMKTHNHH 284
Y C C +F++ G + HI+ H +K F C+ C + F +L H++TH
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRI----HTGQKPFQCRICMRNFSRSDHLTTHIRTHT-- 58
Query: 285 GNGPGGGGHVTYTCKQCNLTFTNKHLFRNHK 315
G P + C C F + H
Sbjct: 59 GEKP-------FACDICGRKFARSDERKRHT 82
Score = 40.5 bits (96), Expect = 2e-04
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 422 HLQQHQKAAHSGVC-YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFM 480
L +H + H+G + C C + F+R L HI+ H E+ F C C + F
Sbjct: 21 SLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIR----THTGEKPFACDICGRKFARS 75
Query: 481 KYLKRHLRVH 490
KRH ++H
Sbjct: 76 DERKRHTKIH 85
Score = 39.8 bits (94), Expect = 3e-04
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 104 FTC--EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVE 161
+ C E C + F ++ L H++ T ++ +C +C + F ++L H+RTH E
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 162 RKY 164
+ +
Sbjct: 61 KPF 63
Score = 32.8 bits (76), Expect = 0.072
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 11/63 (17%)
Query: 255 LEKKFVCQY--CNKEFPFQGYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTFTNKHLFR 312
+E+ + C C++ F G L +H++ H G + C+ C F+
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHT---------GQKPFQCRICMRNFSRSDHLT 51
Query: 313 NHK 315
H
Sbjct: 52 THI 54
Score = 31.7 bits (73), Expect = 0.21
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 874 EKPYKC--KDCGAAFNHNVSLKNHK 896
E+PY C + C F+ + SL H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHI 26
Score = 29.7 bits (68), Expect = 1.0
Identities = 30/120 (25%), Positives = 39/120 (32%), Gaps = 42/120 (35%)
Query: 499 PYKCTA--CNAAFNTKSALNVHRKTCPNLELLNRDLLPNQTGTDDEKKLEQKEMAKKPTV 556
PY C C+ F+ +L H + TG +KP
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRI--------------HTG-------------QKP-- 34
Query: 557 TEPAGEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIK 616
F CRIC F + L H+RT EKP C +C + FA H K
Sbjct: 35 --------FQCRICMRNFSRSDHLTTHIRTHTGEKPFA---CDICGRKFARSDERKRHTK 83
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 74.5 bits (184), Expect = 1e-16
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 819 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYK 878
C C + F+R L HI+ H EK + C+ C ++F + +RH + P
Sbjct: 6 CRICMRNFSRSDHLTTHIR----THTGEKPFACDICGRKFARSDERKRHRDIQH-ILPIL 60
Query: 879 CKDCGAAFNHNVSLKNHK 896
+ N L+N
Sbjct: 61 EDKVEELLSKNYHLENEV 78
Score = 65.2 bits (160), Expect = 3e-13
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 847 KTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
K + C C + F+ ++L H+R HT EKP+ C CG F + K H+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
Score = 55.2 bits (134), Expect = 9e-10
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 655 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERK 714
F C C++ F R+ L H++ T T E+ C++CG+ F + +RH
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR----THTGEKPFACDICGRKFARSDERKRHRDIQH-ILP 58
Query: 715 YKC-VCGDGFNFNVSLKVHMA 734
+ + N L+ +A
Sbjct: 59 ILEDKVEELLSKNYHLENEVA 79
Score = 50.6 bits (122), Expect = 4e-08
Identities = 18/85 (21%), Positives = 26/85 (30%), Gaps = 9/85 (10%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQ 495
+ C C + F+R L HI+ H E+ F C C + F KRH +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDICGRKFARSDERKRHRDIQHIL-- 57
Query: 496 VPHPYKCTACNAAFNTKSALNVHRK 520
P + L
Sbjct: 58 ---PILEDKVEELLSKNYHLENEVA 79
Score = 47.1 bits (113), Expect = 6e-07
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
Query: 794 CDICS---AEVVHLAIHKKHSHSGQ--YHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKT 848
C IC + HL H + +H+G+ + C CG+KF R E + H I
Sbjct: 6 CRICMRNFSRSDHLTTHIR-THTGEKPFA-CDICGRKFARSDERKRHRD-IQH----ILP 58
Query: 849 YICEYCHKEFTFYNYLRRH---MRVHTNEK 875
+ + + + +L ++ E+
Sbjct: 59 ILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 46.3 bits (111), Expect = 1e-06
Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 20/92 (21%)
Query: 227 YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMKTHNHHGN 286
+ C+ C F+R + HI+T H EK F C C ++F +H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRT----HTGEKPFACDICGRKFARSDERKRHRDIQ----- 54
Query: 287 GPGGGGHVT---YTCKQCNLTFTNKHLFRNHK 315
+ + + N
Sbjct: 55 --------HILPILEDKVEELLSKNYHLENEV 78
Score = 42.5 bits (101), Expect = 3e-05
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 14/85 (16%)
Query: 633 CEICS---ARVVNLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERP 687
C IC +R +L H H E P F C+ C + F R+ E + H + P
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHRD-IQ-HILPI--- 59
Query: 688 RCEVCGKTFGLKEYLRRH---MRTH 709
+ + +L ++
Sbjct: 60 LEDKVEELLSKNYHLENEVARLKKL 84
Score = 41.3 bits (98), Expect = 8e-05
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 468 FVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
F C+ C ++F +L H+R H+ + P+ C C F HR
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGE----KPFACDICGRKFARSDERKRHRDI 53
Score = 35.9 bits (84), Expect = 0.006
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 137 RCEVCGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICG 177
+C +C + F ++L H+RTH E+ + C ICG
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFA-------CDICG 38
Score = 35.9 bits (84), Expect = 0.006
Identities = 19/120 (15%), Positives = 32/120 (26%), Gaps = 41/120 (34%)
Query: 499 PYKCTACNAAFNTKSALNVHRKTCPNLELLNRDLLPNQTGTDDEKKLEQKEMAKKPTVTE 558
P++C C F+ L H +T TG +KP
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRT--------------HTG-------------EKP---- 31
Query: 559 PAGEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQM 618
F C IC F + H + P ++ + L + ++
Sbjct: 32 ------FACDICGRKFARSDERKRHRDI-QHILPIL---EDKVEELLSKNYHLENEVARL 81
Score = 35.5 bits (83), Expect = 0.008
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 10/73 (13%)
Query: 213 HLGTHQKVAHSGVT-YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQ 271
HL TH + H+G + C C KF R + H + +
Sbjct: 18 HLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDI----QH-ILPILEDKVEELLSKN 71
Query: 272 GYL---NKHMKTH 281
+L +K
Sbjct: 72 YHLENEVARLKKL 84
Score = 31.7 bits (73), Expect = 0.20
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 9/59 (15%)
Query: 257 KKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTFTNKHLFRNHK 315
K F C+ C + F +L H++TH G P + C C F + H+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHT--GEKP-------FACDICGRKFARSDERKRHR 51
Score = 30.9 bits (71), Expect = 0.40
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 14/83 (16%)
Query: 47 CFVCAKVFATRATLTLHIKQMHGGGQTDYVREKE-VCEICS---ARVVNLAEHKLCH-EP 101
C +C + F+ LT HI+ H G EK C+IC AR H+
Sbjct: 6 CRICMRNFSRSDHLTTHIR-THTG-------EKPFACDICGRKFARSDERKRHRDIQHIL 57
Query: 102 PRFTCEYCVKPFRRTQELRNHVK 124
P + + + L N V
Sbjct: 58 P-ILEDKVEELLSKNYHLENEVA 79
Score = 29.8 bits (68), Expect = 0.90
Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 4/54 (7%)
Query: 14 FTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQM 67
F C IC F + H + P ++ + L + ++
Sbjct: 32 FACDICGRKFARSDERKRHRDI-QHILPIL---EDKVEELLSKNYHLENEVARL 81
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 78.0 bits (193), Expect = 2e-16
Identities = 44/225 (19%), Positives = 65/225 (28%), Gaps = 63/225 (28%)
Query: 685 ERP-RCEV--CGKTFGLKEYLRRHMRTHRVERKYKC---VCGDGFNFNVSLKVHMAKCAF 738
+ C CG + L+ H+ H E+ + C C GF L H
Sbjct: 10 YKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHS----- 64
Query: 739 YLKSLEKEGESDHGG---YETSSLC--YHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKI 793
H G + C C ++ +K H H K
Sbjct: 65 ----------LTHTGEKNFT----CDSDGCDLRFTTKANMKKHFNRFHNI-------KIC 103
Query: 794 CDICSAEVVHLAIHKKHSHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYIC-- 851
+C E +CGK F + +L++H H + Y C
Sbjct: 104 VYVCHFE--------------------NCGKAFKKHNQLKVHQF----SHTQQLPYECPH 139
Query: 852 EYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
E C K F+ + L+RH +VH K C H
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHV 184
Score = 51.8 bits (125), Expect = 2e-07
Identities = 44/213 (20%), Positives = 64/213 (30%), Gaps = 35/213 (16%)
Query: 582 GHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVV 641
G K + C + L H H G + + ++E CE +
Sbjct: 2 GEKALPVVYKRYICSFA-DCGAAYNKNWKLQAH-LCKHTG-EKPFPCKEEGCEKGFTSLH 58
Query: 642 NLAEHKLCH--EPPRFTCE--YCVKPFRRTQELRNHVKAVHLTETPEERP----RCEVCG 693
+L H L H E FTC+ C F ++ H + E CG
Sbjct: 59 HLTRHSLTHTGEKN-FTCDSDGCDLRFTTKANMKKHFN----RFHNIKICVYVCHFENCG 113
Query: 694 KTFGLKEYLRRHMRTHRVERKYKC---VCGDGFNFNVSLKVHMAKCAFYLKSLEKEGESD 750
K F L+ H +H + Y+C C F+ LK H
Sbjct: 114 KAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV--------------- 158
Query: 751 HGGYETSSLCYHCGYYSKNRSTLKNHVRVEHGE 783
H GY C + K + HV H +
Sbjct: 159 HAGYPCKK-DDSCSFVGKTWTLYLKHVAECHQD 190
Score = 49.5 bits (119), Expect = 8e-07
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 16/108 (14%)
Query: 422 HLQQHQKAAHSG---VCYDCTF--CGKGFTRKAELNIHIKAVHLKHQLEQRFVC--QYCN 474
++++H Y C F CGK F + +L +H + H + + C + C+
Sbjct: 89 NMKKHFNR-FHNIKICVYVCHFENCGKAFKKHNQLKVHQFS----HTQQLPYECPHEGCD 143
Query: 475 KDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKTC 522
K F LKRH +VH+ K +C+ T + H C
Sbjct: 144 KRFSLPSRLKRHEKVHAGYP----CKKDDSCSFVGKTWTLYLKHVAEC 187
Score = 49.1 bits (118), Expect = 1e-06
Identities = 31/107 (28%), Positives = 40/107 (37%), Gaps = 14/107 (13%)
Query: 422 HLQQHQKAAHSGVC-YDCT--FCGKGFTRKAELNIHIKAVHLKHQLEQRFVC--QYCNKD 476
LQ H H+G + C C KGFT L H L H E+ F C C+
Sbjct: 29 KLQAHLCK-HTGEKPFPCKEEGCEKGFTSLHHLTRH----SLTHTGEKNFTCDSDGCDLR 83
Query: 477 FPFMKYLKRHLRVHSNDVQVPHPYKCTA--CNAAFNTKSALNVHRKT 521
F +K+H N Y C C AF + L VH+ +
Sbjct: 84 FTTKANMKKHFNRFHN--IKICVYVCHFENCGKAFKKHNQLKVHQFS 128
Score = 48.7 bits (117), Expect = 2e-06
Identities = 45/186 (24%), Positives = 70/186 (37%), Gaps = 17/186 (9%)
Query: 561 GEEAFTCRI--CQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQM 618
+ + C C A ++K +L HL EKP C K F + LT H
Sbjct: 9 VYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEE-GCEKGFTSLHHLTRH-SLT 66
Query: 619 HGGGQTDYVREKEVCEICSARVVNLAEHKLCH-----EPPRFTCEYCVKPFRRTQELRNH 673
H G + ++ + + C++ N+ +H E C K F++ +L+ H
Sbjct: 67 HTG-EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH 125
Query: 674 VKAVHLTETPEERPRC--EVCGKTFGLKEYLRRHMRTHRVERKYKC-VCGDGFNFNVSLK 730
+ H + P E C E C K F L L+RH + H K C
Sbjct: 126 -QFSHTQQLPYE---CPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYL 181
Query: 731 VHMAKC 736
H+A+C
Sbjct: 182 KHVAEC 187
Score = 46.4 bits (111), Expect = 9e-06
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 436 YDCTF--CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY--CNKDFPFMKYLKRHLRVHS 491
Y C+F CG + + +L H+ KH E+ F C+ C K F + +L RH H+
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLC----KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT 68
Query: 492 NDVQVPHPYKCT--ACNAAFNTKSALNVHRKT 521
+ + C C+ F TK+ + H
Sbjct: 69 GE----KNFTCDSDGCDLRFTTKANMKKHFNR 96
Score = 45.3 bits (108), Expect = 2e-05
Identities = 38/196 (19%), Positives = 63/196 (32%), Gaps = 30/196 (15%)
Query: 134 ERP-RCEV--CGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICGFYHKHKKMIYRHI 190
+ C CG + L+ H+ H E+ + E C + RH
Sbjct: 10 YKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEG-----CEKGFTSLHHLTRHS 64
Query: 191 KEHI--EPKKQEKKVCDICSAEVIHLGTHQKVAHSG---VTYNCKF--CSMKFTRVGQMN 243
H + + CD+ ++ H Y C F C F + Q+
Sbjct: 65 LTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR-FHNIKICVYVCHFENCGKAFKKHNQLK 123
Query: 244 IHIKTVHLKHMLEKKFVC--QYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGHVTYTCKQC 301
+H + H + + C + C+K F L +H K H G +C
Sbjct: 124 VHQFS----HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA------GYPCKKDDSCSFV 173
Query: 302 NLTFTN--KHLFRNHK 315
T+T KH+ H+
Sbjct: 174 GKTWTLYLKHVAECHQ 189
Score = 40.3 bits (95), Expect = 0.001
Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 14/147 (9%)
Query: 19 CQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGGGQTDYVRE 78
C A ++K +L HL EKP C K F + LT H H G + ++ +
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEE-GCEKGFTSLHHLTRH-SLTHTG-EKNFTCD 76
Query: 79 KEVCEICSARVVNLAEHKLCH-----EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPE 133
+ C++ N+ +H E C K F++ +L+ H + H + P
Sbjct: 77 SDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH-QFSHTQQLPY 135
Query: 134 ERPRC--EVCGKTFGLKEYLRRHMRTH 158
E C E C K F L L+RH + H
Sbjct: 136 E---CPHEGCDKRFSLPSRLKRHEKVH 159
Score = 37.2 bits (87), Expect = 0.011
Identities = 30/142 (21%), Positives = 45/142 (31%), Gaps = 16/142 (11%)
Query: 31 GHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVV 90
G K + C + L H H G+ + ++E CE +
Sbjct: 2 GEKALPVVYKRYICSFA-DCGAAYNKNWKLQAH-LCKH-TGEKPFPCKEEGCEKGFTSLH 58
Query: 91 NLAEHKLCH--EPPRFTCE--YCVKPFRRTQELRNHVKAVHLTETPEERP----RCEVCG 142
+L H L H E FTC+ C F ++ H + E CG
Sbjct: 59 HLTRHSLTHTGEKN-FTCDSDGCDLRFTTKANMKKHFN----RFHNIKICVYVCHFENCG 113
Query: 143 KTFGLKEYLRRHMRTHRVERKY 164
K F L+ H +H + Y
Sbjct: 114 KAFKKHNQLKVHQFSHTQQLPY 135
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 76.5 bits (189), Expect = 2e-16
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 819 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYC-----HKEFTFYNYLRRHMRVHTN 873
C ++F + +L HI H+ H K ++C + + F L HMR HT
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHI-HGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 874 EKPYKCK--DCGAAFNHNVSLKNHK 896
EKP+KC C +++ +LK H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHL 89
Score = 71.5 bits (176), Expect = 1e-14
Identities = 47/226 (20%), Positives = 72/226 (31%), Gaps = 90/226 (39%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCGDGFNFNVSLKVHMAKCAFYLKSL 743
E R + C + F +E L H+ + +
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHI-------------------------------- 28
Query: 744 EKEGESDHGGYETSSLCYHCGYYS-----KNRSTLKNHVRVEHGENQAKRKEKKICDICS 798
HG +C+ G K + L H+R
Sbjct: 29 -------HGE-RKEFVCHWGGCSRELRPFKAQYMLVVHMRR------------------- 61
Query: 799 AEVVHLAIHKKHSHSGQY-HVCPH--CGKKFTRKAELQLHIKGIHLKHQLEKTYICEY-- 853
H+G+ H C C K ++R L+ H++ H EK Y+CE+
Sbjct: 62 -------------HTGEKPHKCTFEGCRKSYSRLENLKTHLR----SHTGEKPYMCEHEG 104
Query: 854 CHKEFTFYNYLRRHM-RVHTNEKPYKCK--DCGAAFNHNVSLKNHK 896
C K F+ + +H R H+NEKPY CK C + SL+ H
Sbjct: 105 CSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV 150
Score = 67.2 bits (165), Expect = 4e-13
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 16/107 (14%)
Query: 803 HLAIH--KKHSHSGQY-HVCPHCG-----KKFTRKAELQLHIKGIHLKHQLEKTYICEY- 853
L H +H H + VC G + F + L +H++ +H EK + C +
Sbjct: 18 QLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR----RHTGEKPHKCTFE 73
Query: 854 -CHKEFTFYNYLRRHMRVHTNEKPYKCK--DCGAAFNHNVSLKNHKN 897
C K ++ L+ H+R HT EKPY C+ C AF++ H+N
Sbjct: 74 GCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN 120
Score = 58.0 bits (141), Expect = 6e-10
Identities = 31/148 (20%), Positives = 52/148 (35%), Gaps = 33/148 (22%)
Query: 590 EKPEKSNLCFVCAKVFATRATLTLHIKQMH-GGGQTDYVREKEVCEICSARVVNLAEHKL 648
E + C++ F ++ L HI H G + ++V C
Sbjct: 1 ETDCR---WDGCSQEFDSQEQLVHHINSEHIHGERKEFV-----CHWGG----------- 41
Query: 649 CHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRT 708
C ++PF+ L H++ H E P + C K++ E L+ H+R+
Sbjct: 42 --------CSRELRPFKAQYMLVVHMR-RHTGEKPHKCTFEG-CRKSYSRLENLKTHLRS 91
Query: 709 HRVERKYKC---VCGDGFNFNVSLKVHM 733
H E+ Y C C F+ H
Sbjct: 92 HTGEKPYMCEHEGCSKAFSNASDRAKHQ 119
Score = 54.1 bits (131), Expect = 1e-08
Identities = 40/188 (21%), Positives = 63/188 (33%), Gaps = 48/188 (25%)
Query: 104 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCG-----KTFGLKEYLRRHMRTH 158
+ C + F ++L +H+ + H + C G + F + L HMR H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEH-IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH 62
Query: 159 RVERKYNGFESAALCFICGFYHKHKKMIYRHIKEHIEPKKQEKKVCDICSAEVIHLGTHQ 218
E+ + C G C + + +L TH
Sbjct: 63 TGEKPHK-------CTFEG--------------------------CRKSYSRLENLKTHL 89
Query: 219 KVAHSGVT-YNCKF--CSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQY--CNKEFPFQGY 273
+ H+G Y C+ CS F+ H H EK +VC+ C K +
Sbjct: 90 RS-HTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN---EKPYVCKLPGCTKRYTDPSS 145
Query: 274 LNKHMKTH 281
L KH+KT
Sbjct: 146 LRKHVKTV 153
Score = 53.0 bits (128), Expect = 3e-08
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCN-----KDFPFMKYLKRHLRVH 490
C + F + +L HI + H+ H + FVC + + F L H+R H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHI-HGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH 62
Query: 491 SNDVQVPHPYKCTA--CNAAFNTKSALNVHRKT 521
+ + P+KCT C +++ L H ++
Sbjct: 63 TGE----KPHKCTFEGCRKSYSRLENLKTHLRS 91
Score = 48.7 bits (117), Expect = 8e-07
Identities = 41/165 (24%), Positives = 61/165 (36%), Gaps = 29/165 (17%)
Query: 11 EEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVC-----AKVFATRATLTLHIK 65
E C FD +L H+ + H K +C + F + L +H++
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 66 QMHGGGQTDYVREK------EVCEICSARVVNLAEHKLCH--EPPRFTCEY--CVKPFRR 115
H G EK E C +R+ NL H H E P + CE+ C K F
Sbjct: 61 -RHTG-------EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKP-YMCEHEGCSKAFSN 111
Query: 116 TQELRNHVKAVHLTETPEERPRCEV--CGKTFGLKEYLRRHMRTH 158
+ H H E P C++ C K + LR+H++T
Sbjct: 112 ASDRAKHQNRTHSNEKPY---VCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 48.7 bits (117), Expect = 8e-07
Identities = 41/165 (24%), Positives = 61/165 (36%), Gaps = 29/165 (17%)
Query: 562 EEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVC-----AKVFATRATLTLHIK 616
E C FD +L H+ + H K +C + F + L +H++
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 617 QMHGGGQTDYVREK------EVCEICSARVVNLAEHKLCH--EPPRFTCEY--CVKPFRR 666
H G EK E C +R+ NL H H E P + CE+ C K F
Sbjct: 61 -RHTG-------EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKP-YMCEHEGCSKAFSN 111
Query: 667 TQELRNHVKAVHLTETPEERPRCEV--CGKTFGLKEYLRRHMRTH 709
+ H H E P C++ C K + LR+H++T
Sbjct: 112 ASDRAKHQNRTHSNEKPY---VCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 47.2 bits (113), Expect = 3e-06
Identities = 44/216 (20%), Positives = 71/216 (32%), Gaps = 66/216 (30%)
Query: 39 EKPEKSNLCFVCAKVFATRATLTLHIKQMH-GGGQTDYVREKEVCEICSARVVNLAEHKL 97
E + C++ F ++ L HI H G + ++ VC
Sbjct: 1 ETDCR---WDGCSQEFDSQEQLVHHINSEHIHGERKEF-----VCHWGG----------- 41
Query: 98 CHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRT 157
C ++PF+ L H++ H E P + C K++ E L+ H+R+
Sbjct: 42 --------CSRELRPFKAQYMLVVHMR-RHTGEKPHKCTFEG-CRKSYSRLENLKTHLRS 91
Query: 158 HRVERKYNGFESAALCFICGFYHKHKKMIYRHIKEHIEPKKQEKKVCDICSAEVIHLGTH 217
H E+ Y C E + C + H
Sbjct: 92 HTGEKPYM-------C--------------------------EHEGCSKAFSNASDRAKH 118
Query: 218 QKVAHSGVT-YNCKF--CSMKFTRVGQMNIHIKTVH 250
Q HS Y CK C+ ++T + H+KTVH
Sbjct: 119 QNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 47.2 bits (113), Expect = 3e-06
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 17/108 (15%)
Query: 422 HLQQHQKAAHSGV-CYDCTF--CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY--CNKD 476
L H + H+G + CTF C K ++R L H+++ H E+ ++C++ C+K
Sbjct: 54 MLVVHMRR-HTGEKPHKCTFEGCRKSYSRLENLKTHLRS----HTGEKPYMCEHEGCSKA 108
Query: 477 FPFMKYLKRH-LRVHSNDVQVPHPYKCTA--CNAAFNTKSALNVHRKT 521
F +H R HSN+ PY C C + S+L H KT
Sbjct: 109 FSNASDRAKHQNRTHSNE----KPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 45.3 bits (108), Expect = 1e-05
Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 20/118 (16%)
Query: 413 CDICCAEVLHLQQHQKAAHSG------VCY--DCTFCGKGFTRKAELNIHIKAVHLKHQL 464
C L H + H VC+ C+ + F + L +H++ H
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR----HTG 64
Query: 465 EQRFVCQY--CNKDFPFMKYLKRHLRVHSNDVQVPHPYKCT--ACNAAFNTKSALNVH 518
E+ C + C K + ++ LK HLR H+ + PY C C+ AF+ S H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGE----KPYMCEHEGCSKAFSNASDRAKH 118
Score = 36.4 bits (85), Expect = 0.015
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 8/54 (14%)
Query: 256 EKKFVCQYCNKEFPFQGYLNKHMKT-HNHHGNGPGGGGHVTYTCKQCNLTFTNK 308
E C++EF Q L H+ + H H + C + +
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKE-------FVCHWGGCSRELR 47
Score = 35.6 bits (83), Expect = 0.026
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 12/65 (18%)
Query: 465 EQRFVCQYCNKDFPFMKYLKRHL---RVHSNDVQVPHPYKCTACNA-----AFNTKSALN 516
E C+++F + L H+ +H + C F + L
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGER----KEFVCHWGGCSRELRPFKAQYMLV 56
Query: 517 VHRKT 521
VH +
Sbjct: 57 VHMRR 61
Score = 32.2 bits (74), Expect = 0.36
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 422 HLQQHQKAAHSGVC-YDCTF--CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY--CNKD 476
+L+ H ++ H+G Y C C K F+ ++ H H E+ +VC+ C K
Sbjct: 84 NLKTHLRS-HTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN---EKPYVCKLPGCTKR 139
Query: 477 FPFMKYLKRHLRVHS 491
+ L++H++
Sbjct: 140 YTDPSSLRKHVKTVH 154
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 75.8 bits (187), Expect = 3e-16
Identities = 37/141 (26%), Positives = 53/141 (37%), Gaps = 30/141 (21%)
Query: 760 CYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQYHVC 819
C L HV +EH ++++H + C
Sbjct: 28 KKSCDRTFSTMHELVTHVTMEHVGG----------------------PEQNNHVCYWEEC 65
Query: 820 PHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVHTNEKPY 877
P GK F K +L HI+ +H EK + C + C K F L+ H R HT EKP+
Sbjct: 66 PREGKSFKAKYKLVNHIR-VHTG---EKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPF 121
Query: 878 KC--KDCGAAFNHNVSLKNHK 896
KC + C F ++ K H
Sbjct: 122 KCEFEGCDRRFANSSDRKKHM 142
Score = 68.9 bits (169), Expect = 1e-13
Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 812 HSGQY-HVCPHCGKKFTRKAELQLHIKGIH-----LKHQLEKTYICEYCHKEFTFYNYLR 865
Q C + F+ EL H+ H + + C K F L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 866 RHMRVHTNEKPYKCK--DCGAAFNHNVSLKNHK 896
H+RVHT EKP+ C CG F + +LK HK
Sbjct: 80 NHIRVHTGEKPFPCPFPGCGKIFARSENLKIHK 112
Score = 61.5 bits (150), Expect = 3e-11
Identities = 38/154 (24%), Positives = 51/154 (33%), Gaps = 30/154 (19%)
Query: 583 HLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVVN 642
+ C + F+T L H+ H GG
Sbjct: 16 CKWIDEAQLSRP---KKSCDRTFSTMHELVTHVTMEHVGG-------------------- 52
Query: 643 LAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYL 702
+ H C K F+ +L NH++ VH E P P CGK F E L
Sbjct: 53 --PEQNNHVCYWEECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPG-CGKIFARSENL 108
Query: 703 RRHMRTHRVERKYKCV---CGDGFNFNVSLKVHM 733
+ H RTH E+ +KC C F + K HM
Sbjct: 109 KIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
Score = 55.0 bits (133), Expect = 5e-09
Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 10/83 (12%)
Query: 823 GKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYK---- 878
G + ++ + + + + + C + F+ + L H+ + P +
Sbjct: 1 GSSGSSGQPIKQELS-CKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV 59
Query: 879 -----CKDCGAAFNHNVSLKNHK 896
C G +F L NH
Sbjct: 60 CYWEECPREGKSFKAKYKLVNHI 82
Score = 54.6 bits (132), Expect = 9e-09
Identities = 34/223 (15%), Positives = 57/223 (25%), Gaps = 76/223 (34%)
Query: 662 KPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCGD 721
Q ++ + + + + C +TF L H+ V +
Sbjct: 2 SSGSSGQPIKQELS-CKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQN---- 56
Query: 722 GFNFNVSLKVHMAKCAFYLKSLEKEGESDHGGYETSSLCYHCGYYSKNRSTLKNHVRVEH 781
C G K + L NH+RV
Sbjct: 57 ------------------------------NHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 782 GE--NQAKRKEKKICDICSAEVVHLAIHKKHSHSGQY-HVCPH--CGKKFTRKAELQLHI 836
GE C A +L IHK+ +H+G+ C C ++F
Sbjct: 87 GEKPFPCPFPG---CGKIFARSENLKIHKR-THTGEKPFKCEFEGCDRRFANS------- 135
Query: 837 KGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
+ ++HM VHT++K
Sbjct: 136 -------------------------SDRKKHMHVHTSDKSGPS 153
Score = 54.2 bits (131), Expect = 1e-08
Identities = 35/180 (19%), Positives = 53/180 (29%), Gaps = 45/180 (25%)
Query: 111 KPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYNGFESA 170
Q ++ + + + + C +TF L H+ V
Sbjct: 2 SSGSSGQPIKQELS-CKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 171 AL--CFICG--FYHKHKKMIYRHIKEHIEPKKQEKKVCDICSAEVIHLGTHQKVAHSGVT 226
C G F K+ L H +V H+G
Sbjct: 61 YWEECPREGKSFKAKY------------------------------KLVNHIRV-HTGEK 89
Query: 227 -YNCKF--CSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQY--CNKEFPFQGYLNKHMKTH 281
+ C F C F R + IH +T H EK F C++ C++ F KHM H
Sbjct: 90 PFPCPFPGCGKIFARSENLKIHKRT----HTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 53.1 bits (128), Expect = 2e-08
Identities = 35/133 (26%), Positives = 48/133 (36%), Gaps = 21/133 (15%)
Query: 402 HVAPKKREMKICDICCAEVLHLQQHQ---------KAAHSGVCYDCTFCGKGFTRKAELN 452
A R K CD + + L H + H +C GK F K +L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 453 IHIKAVHLKHQLEQRFVCQY--CNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTA--CNAA 508
HI+ H E+ F C + C K F + LK H R H+ + P+KC C+
Sbjct: 80 NHIRV----HTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGE----KPFKCEFEGCDRR 131
Query: 509 FNTKSALNVHRKT 521
F S H
Sbjct: 132 FANSSDRKKHMHV 144
Score = 49.2 bits (118), Expect = 7e-07
Identities = 35/144 (24%), Positives = 52/144 (36%), Gaps = 19/144 (13%)
Query: 32 HLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGGG--QTDYVREKEVCEICS--- 86
+ C + F+T L H+ H GG Q ++V E C
Sbjct: 16 CKWIDEAQLSRP---KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSF 72
Query: 87 ARVVNLAEHKLCH--EPPRFTCEY--CVKPFRRTQELRNHVKAVHLTETPEERPRCEV-- 140
L H H E P F C + C K F R++ L+ H + H E P + CE
Sbjct: 73 KAKYKLVNHIRVHTGEKP-FPCPFPGCGKIFARSENLKIHKR-THTGEKPFK---CEFEG 127
Query: 141 CGKTFGLKEYLRRHMRTHRVERKY 164
C + F ++HM H ++
Sbjct: 128 CDRRFANSSDRKKHMHVHTSDKSG 151
Score = 47.7 bits (114), Expect = 2e-06
Identities = 37/167 (22%), Positives = 57/167 (34%), Gaps = 45/167 (26%)
Query: 561 GEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNL------CFVCAKVFATRATLTLH 614
+ + + C F L H+ H PE++N C K F + L H
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
Query: 615 IKQMHGGGQTDYVREKEVCEICSARVVNLAEHKLCHEPPRFTCEY--CVKPFRRTQELRN 672
I+ +H G EK P F C + C K F R++ L+
Sbjct: 82 IR-VHTG-------EK---------------------P--FPCPFPGCGKIFARSENLKI 110
Query: 673 HVKAVHLTETPEERPRCEV--CGKTFGLKEYLRRHMRTHRVERKYKC 717
H + H E P + CE C + F ++HM H ++
Sbjct: 111 HKR-THTGEKPFK---CEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 45.7 bits (109), Expect = 1e-05
Identities = 5/44 (11%), Positives = 8/44 (18%)
Query: 854 CHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKN 897
+ + K C F+ L H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVT 46
Score = 44.6 bits (106), Expect = 2e-05
Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 6/85 (7%)
Query: 442 GKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHS-----NDVQV 496
G + + + + + + C++ F M L H+ + + V
Sbjct: 1 GSSGSSGQPIKQELS-CKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV 59
Query: 497 PHPYKCTACNAAFNTKSALNVHRKT 521
+ +C +F K L H +
Sbjct: 60 CYWEECPREGKSFKAKYKLVNHIRV 84
Score = 41.9 bits (99), Expect = 2e-04
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 253 HMLEKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGHVTY--TCKQCNLTFTNKHL 310
+ + C++ F L H+ H GP HV Y C + +F K+
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTM--EHVGGPEQNNHVCYWEECPREGKSFKAKYK 77
Query: 311 FRNHK 315
NH
Sbjct: 78 LVNHI 82
Score = 41.9 bits (99), Expect = 2e-04
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 14/88 (15%)
Query: 422 HLQQHQKAAHSGVC-YDCTF--CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY--CNKD 476
L H + H+G + C F CGK F R L IH + H E+ F C++ C++
Sbjct: 77 KLVNHIRV-HTGEKPFPCPFPGCGKIFARSENLKIHKRT----HTGEKPFKCEFEGCDRR 131
Query: 477 FPFMKYLKRHLRVHSNDVQVPHPYKCTA 504
F K+H+ VH++D +
Sbjct: 132 FANSSDRKKHMHVHTSD----KSGPSSG 155
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 74.5 bits (184), Expect = 4e-16
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 820 PHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVHTNEKPY 877
P C K++ + + LQ+H + KH EK Y C++ C + F+ + L+RH R HT KP+
Sbjct: 12 PGCNKRYFKLSHLQMHSR----KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPF 67
Query: 878 KCKDCGAAFNHNVSLKNHK 896
+CK C F+ + LK H
Sbjct: 68 QCKTCQRKFSRSDHLKTHT 86
Score = 72.9 bits (180), Expect = 1e-15
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 803 HLAIHKKHSHSGQ--YH-VCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFT 859
HL +H + H+G+ Y C ++F+R +L+ H + +H K + C+ C ++F+
Sbjct: 23 HLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQR----RHTGVKPFQCKTCQRKFS 77
Query: 860 FYNYLRRHMRVHTNEKPYKCK--DCGAAFNHNVSLKNHK 896
++L+ H R HT EKP+ C+ C F + L H
Sbjct: 78 RSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHH 116
Score = 52.9 bits (128), Expect = 1e-08
Identities = 39/154 (25%), Positives = 57/154 (37%), Gaps = 44/154 (28%)
Query: 134 ERP-RCE--VCGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICGFYHKHKKMIYRHI 190
+RP C C K + +L+ H R H E+ Y C
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQ----------C-------------- 39
Query: 191 KEHIEPKKQEKKVCDICSAEVIHLGTHQKVAHSGVT-YNCKFCSMKFTRVGQMNIHIKTV 249
+ K C+ + L HQ+ H+GV + CK C KF+R + H +T
Sbjct: 40 ---------DFKDCERRFSRSDQLKRHQRR-HTGVKPFQCKTCQRKFSRSDHLKTHTRT- 88
Query: 250 HLKHMLEKKFVCQY--CNKEFPFQGYLNKHMKTH 281
H EK F C++ C K+F L +H H
Sbjct: 89 ---HTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 52.5 bits (127), Expect = 2e-08
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 642 NLAEHKLCH--EPPRFTCEY--CVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFG 697
+L H H E P + C++ C + F R+ +L+ H + T + +C+ C + F
Sbjct: 23 HLQMHSRKHTGEKP-YQCDFKDCERRFSRSDQLKRHQR----RHTGVKPFQCKTCQRKFS 77
Query: 698 LKEYLRRHMRTHRVERKYKC---VCGDGFNFNVSLKVHM 733
++L+ H RTH E+ + C C F + L H
Sbjct: 78 RSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHH 116
Score = 50.6 bits (122), Expect = 9e-08
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 14/105 (13%)
Query: 422 HLQQHQKAAHSG-VCYDCTF--CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFP 478
HLQ H + H+G Y C F C + F+R +L H + +H + F C+ C + F
Sbjct: 23 HLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRHQR----RHTGVKPFQCKTCQRKFS 77
Query: 479 FMKYLKRHLRVHSNDVQVPHPYKCTA--CNAAFNTKSALNVHRKT 521
+LK H R H+ + P+ C C F L H
Sbjct: 78 RSDHLKTHTRTHTGE----KPFSCRWPSCQKKFARSDELVRHHNM 118
Score = 49.8 bits (120), Expect = 2e-07
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 436 YDCT--FCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY--CNKDFPFMKYLKRHLRVHS 491
+ C C K + + + L +H + KH E+ + C + C + F LKRH R H+
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSR----KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT 62
Query: 492 NDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
P++C C F+ L H +T
Sbjct: 63 GV----KPFQCKTCQRKFSRSDHLKTHTRT 88
Score = 45.6 bits (109), Expect = 6e-06
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 19/110 (17%)
Query: 770 RSTLKNHVRVEHGENQAKRK----EKKICDICSAEVVHLAIHKKHSHSGQ--YHVCPHCG 823
S L+ H R GE K + K C+ + L H++ H+G + C C
Sbjct: 21 LSHLQMHSRKHTGE-----KPYQCDFKDCERRFSRSDQLKRHQR-RHTGVKPFQ-CKTCQ 73
Query: 824 KKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVH 871
+KF+R L+ H + H EK + C + C K+F + L RH +H
Sbjct: 74 RKFSRSDHLKTHTR----THTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 45.2 bits (108), Expect = 7e-06
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 685 ERP-RCE--VCGKTFGLKEYLRRHMRTHRVERKYKCV---CGDGFNFNVSLKVHM 733
+RP C C K + +L+ H R H E+ Y+C C F+ + LK H
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ 58
Score = 44.0 bits (105), Expect = 2e-05
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 16/126 (12%)
Query: 39 EKPEKSNLC--FVCAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVVNLAEHK 96
++P C C K + + L +H + H G + Y + + CE +R L H+
Sbjct: 4 KRPFM---CAYPGCNKRYFKLSHLQMHSR-KHTG-EKPYQCDFKDCERRFSRSDQLKRHQ 58
Query: 97 LCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEV--CGKTFGLKEYLR 152
H P F C+ C + F R+ L+ H + T T E+ C C K F + L
Sbjct: 59 RRHTGVKP-FQCKTCQRKFSRSDHLKTHTR----THTGEKPFSCRWPSCQKKFARSDELV 113
Query: 153 RHMRTH 158
RH H
Sbjct: 114 RHHNMH 119
Score = 44.0 bits (105), Expect = 2e-05
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 16/126 (12%)
Query: 590 EKPEKSNLC--FVCAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVVNLAEHK 647
++P C C K + + L +H + H G + Y + + CE +R L H+
Sbjct: 4 KRPFM---CAYPGCNKRYFKLSHLQMHSR-KHTG-EKPYQCDFKDCERRFSRSDQLKRHQ 58
Query: 648 LCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEV--CGKTFGLKEYLR 703
H P F C+ C + F R+ L+ H + T T E+ C C K F + L
Sbjct: 59 RRHTGVKP-FQCKTCQRKFSRSDHLKTHTR----THTGEKPFSCRWPSCQKKFARSDELV 113
Query: 704 RHMRTH 709
RH H
Sbjct: 114 RHHNMH 119
Score = 39.8 bits (94), Expect = 6e-04
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 91 NLAEHKLCH--EPPRFTCEY--CVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFG 146
+L H H E P + C++ C + F R+ +L+ H + T + +C+ C + F
Sbjct: 23 HLQMHSRKHTGEKP-YQCDFKDCERRFSRSDQLKRHQR----RHTGVKPFQCKTCQRKFS 77
Query: 147 LKEYLRRHMRTHRVERKY 164
++L+ H RTH E+ +
Sbjct: 78 RSDHLKTHTRTHTGEKPF 95
Score = 39.4 bits (93), Expect = 7e-04
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 422 HLQQHQKAAHSGVC-YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY--CNKDFP 478
L++HQ+ H+GV + C C + F+R L H + H E+ F C++ C K F
Sbjct: 53 QLKRHQRR-HTGVKPFQCKTCQRKFSRSDHLKTHTR----THTGEKPFSCRWPSCQKKFA 107
Query: 479 FMKYLKRHLRVH 490
L RH +H
Sbjct: 108 RSDELVRHHNMH 119
Score = 36.0 bits (84), Expect = 0.010
Identities = 36/146 (24%), Positives = 48/146 (32%), Gaps = 44/146 (30%)
Query: 473 CNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTA--CNAAFNTKSALNVHRKTCPNLELLNR 530
CNK + + +L+ H R H+ + PY+C C F+ L H++
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGE----KPYQCDFKDCERRFSRSDQLKRHQRR--------- 60
Query: 531 DLLPNQTGTDDEKKLEQKEMAKKPTVTEPAGEEAFTCRICQAVFDKYVRLCGHLRTVHNE 590
TG KP F C+ CQ F + L H RT E
Sbjct: 61 -----HTG-------------VKP----------FQCKTCQRKFSRSDHLKTHTRTHTGE 92
Query: 591 KPEKSNLCFVCAKVFATRATLTLHIK 616
KP C K FA L H
Sbjct: 93 KPFSCRWP-SCQKKFARSDELVRHHN 117
Score = 33.3 bits (77), Expect = 0.10
Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 872 TNEKPYKCK--DCGAAFNHNVSLKNHK 896
+ ++P+ C C + L+ H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHS 28
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 72.9 bits (180), Expect = 1e-15
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 821 HCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCK 880
CGK FT K++ H+ +HL + Y C C K+F ++L HM++HT KPY+C
Sbjct: 14 QCGKSFTHKSQRDRHMS-MHLG---LRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 881 DCGAAFNHNVSL 892
C F S
Sbjct: 70 ICAKRFMWRDSF 81
Score = 70.9 bits (175), Expect = 6e-15
Identities = 25/93 (26%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 803 HLAIHKKHSHSGQY-HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFY 861
H H G + C CGKKF K L H+K IH K Y C C K F +
Sbjct: 24 QRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTG---IKPYECNICAKRFMWR 78
Query: 862 NYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKN 894
+ H V + K Y+ +
Sbjct: 79 DSF--HRHVTSCTKSYEAAKAEQNTTEASGPSS 109
Score = 63.6 bits (156), Expect = 2e-12
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
+K Y C+ C K FT + RHM +H +PY C CG F L H
Sbjct: 8 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 57
Score = 49.4 bits (119), Expect = 2e-07
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 655 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERK 714
+ C+ C K F + H ++HL P C VCGK F +K +L HM+ H +
Sbjct: 11 YPCQ-CGKSFTHKSQRDRH-MSMHLGLRPYG---CGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 715 YKC-VCGDGFNFNVSL 729
Y+C +C F + S
Sbjct: 66 YECNICAKRFMWRDSF 81
Score = 45.9 bits (110), Expect = 3e-06
Identities = 23/96 (23%), Positives = 31/96 (32%), Gaps = 12/96 (12%)
Query: 422 HLQQHQKAAHSGVC-YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFM 480
+H H G+ Y C CGK F K L H+K H + + C C K F +
Sbjct: 24 QRDRHMSM-HLGLRPYGCGVCGKKFKMKHHLVGHMKI----HTGIKPYECNICAKRFMWR 78
Query: 481 KYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALN 516
H V S Y+ S +
Sbjct: 79 DSF--HRHVTSCT----KSYEAAKAEQNTTEASGPS 108
Score = 44.7 bits (107), Expect = 8e-06
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQ 495
Y C CGK FT K++ + H+ H + + C C K F +L H+++H+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSM----HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI-- 63
Query: 496 VPHPYKCTACNAAFNTKSALNVH 518
PY+C C F + + + H
Sbjct: 64 --KPYECNICAKRFMWRDSFHRH 84
Score = 42.4 bits (101), Expect = 5e-05
Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 10/91 (10%)
Query: 642 NLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLK 699
H H P + C C K F+ L H+K +H P E C +C K F +
Sbjct: 24 QRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMK-IHTGIKPYE---CNICAKRFMWR 78
Query: 700 EYLRRHMRTHRVERKYKCV-CGDGFNFNVSL 729
+ H + Y+
Sbjct: 79 DSF--HRHVTSCTKSYEAAKAEQNTTEASGP 107
Score = 40.9 bits (97), Expect = 2e-04
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 104 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERK 163
+ C+ C K F + H ++HL P C VCGK F +K +L HM+ H +
Sbjct: 11 YPCQ-CGKSFTHKSQRDRH-MSMHLGLRPYG---CGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 164 Y 164
Y
Sbjct: 66 Y 66
Score = 40.5 bits (96), Expect = 3e-04
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 868 MRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
+ +K Y C CG +F H H
Sbjct: 2 SSGSSGDKLYPC-QCGKSFTHKSQRDRHM 29
Score = 38.2 bits (90), Expect = 0.002
Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 17/97 (17%)
Query: 213 HLGTHQKVAHSGVT-YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQ 271
H + H G+ Y C C KF + H+K H K + C C K F ++
Sbjct: 24 QRDRHMSM-HLGLRPYGCGVCGKKFKMKHHLVGHMKI----HTGIKPYECNICAKRFMWR 78
Query: 272 GYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTFTNK 308
++H+ Y + T
Sbjct: 79 DSFHRHV----TSCTKS-------YEAAKAEQNTTEA 104
Score = 36.3 bits (85), Expect = 0.007
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 465 EQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
++ + CQ C K F RH+ +H PY C C F K L H K
Sbjct: 8 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGL----RPYGCGVCGKKFKMKHHLVGHMKI 59
Score = 35.1 bits (82), Expect = 0.019
Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 91 NLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLK 148
H H P + C C K F+ L H+K +H P E C +C K F +
Sbjct: 24 QRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMK-IHTGIKPYE---CNICAKRFMWR 78
Query: 149 EYLRRHMRTHRVERKY 164
+ H + Y
Sbjct: 79 DSF--HRHVTSCTKSY 92
Score = 33.6 bits (78), Expect = 0.063
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 14/82 (17%)
Query: 227 YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMKTHNHHGN 286
Y C+ C FT Q + H+ H+ + + C C K+F + +L HMK H G
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSM----HLGLRPYGCGVCGKKFKMKHHLVGHMKIHT--GI 63
Query: 287 GPGGGGHVTYTCKQCNLTFTNK 308
P Y C C F +
Sbjct: 64 KP-------YECNICAKRFMWR 78
Score = 30.9 bits (71), Expect = 0.54
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
Query: 256 EKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTFTNKHLFRNHK 315
+K + CQ C K F + ++HM H G P Y C C F KH H
Sbjct: 8 DKLYPCQ-CGKSFTHKSQRDRHMSMHL--GLRP-------YGCGVCGKKFKMKHHLVGHM 57
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 72.1 bits (178), Expect = 1e-15
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 819 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNE--KP 876
C CGK F L H K H EK Y C C F + + H+R H KP
Sbjct: 10 CEICGKIFRDVYHLNRH-KLSHSG---EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP 65
Query: 877 YKCKDCGAAFNHNVSLKNH 895
Y C+ CG F+ L H
Sbjct: 66 YICQSCGKGFSRPDHLNGH 84
Score = 67.9 bits (167), Expect = 4e-14
Identities = 18/51 (35%), Positives = 21/51 (41%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
CE C K F +L RH H+ EKPY C CG F + H
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHV 55
Score = 56.0 bits (136), Expect = 7e-10
Identities = 27/85 (31%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQ 495
C CGK F LN H L H E+ + C C F + H+R H
Sbjct: 8 VACEICGKIFRDVYHLNRH----KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG--S 61
Query: 496 VPHPYKCTACNAAFNTKSALNVHRK 520
V PY C +C F+ LN H K
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIK 86
Score = 53.6 bits (130), Expect = 4e-09
Identities = 29/82 (35%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 655 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERK 714
CE C K FR L H K H E P C VCG F K+ + H+R+H
Sbjct: 8 VACEICGKIFRDVYHLNRH-KLSHSGEKPYS---CPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 715 --YKC-VCGDGFNFNVSLKVHM 733
Y C CG GF+ L H+
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHI 85
Score = 48.6 bits (117), Expect = 3e-07
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 803 HLAIHKKHSHSGQY-HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFY 861
HL HK SHSG+ + CP CG +F RK + H++ H + K YIC+ C K F+
Sbjct: 22 HLNRHKL-SHSGEKPYSCPVCGLRFKRKDRMSYHVR-SHDG-SVGKPYICQSCGKGFSRP 78
Query: 862 NYLRRHM-RVHTNEK 875
++L H+ +VH+
Sbjct: 79 DHLNGHIKQVHSGPS 93
Score = 47.5 bits (114), Expect = 7e-07
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKC-VCGDGFNFNVSLKVHM 733
CE+CGK F +L RH +H E+ Y C VCG F + H+
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHV 55
Score = 43.2 bits (103), Expect = 2e-05
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 16/93 (17%)
Query: 227 YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMKTHNHHGN 286
C+ C F V +N H + H EK + C C F + ++ H+++H+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLS----HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 287 GPGGGGHVTYTCKQCNLTFT-----NKHLFRNH 314
P Y C+ C F+ N H+ + H
Sbjct: 64 KP-------YICQSCGKGFSRPDHLNGHIKQVH 89
Score = 41.7 bits (99), Expect = 6e-05
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 871 HTNEKPYKCKDCGAAFNHNVSLKNHK 896
+ C+ CG F L HK
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHK 27
Score = 40.9 bits (97), Expect = 1e-04
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 633 CEICS---ARVVNLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERP 687
CEIC V +L HKL H E P ++C C F+R + HV+ H +P
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVR-SHDGSVG--KP 65
Query: 688 -RCEVCGKTFGLKEYLRRHM-RTH 709
C+ CGK F ++L H+ + H
Sbjct: 66 YICQSCGKGFSRPDHLNGHIKQVH 89
Score = 40.2 bits (95), Expect = 3e-04
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 468 FVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
C+ C K F + +L RH HS + PY C C F K ++ H ++
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGE----KPYSCPVCGLRFKRKDRMSYHVRS 57
Score = 37.9 bits (89), Expect = 0.001
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 422 HLQQHQKAAHSGVC---YDCTFCGKGFTRKAELNIHIKAVH 459
+ H ++ H G Y C CGKGF+R LN HIK VH
Sbjct: 50 RMSYHVRS-HDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 37.9 bits (89), Expect = 0.001
Identities = 31/123 (25%), Positives = 42/123 (34%), Gaps = 44/123 (35%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICG--FYHKHKKMIYRHI 190
CE+CGK F +L RH +H E+ Y+ C +CG F K
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYS-------CPVCGLRFKRKD-------- 49
Query: 191 KEHIEPKKQEKKVCDICSAEVIHLGTHQKVAHSGVT---YNCKFCSMKFTRVGQMNIHIK 247
+ H + H G Y C+ C F+R +N HIK
Sbjct: 50 ----------------------RMSYHVRS-HDGSVGKPYICQSCGKGFSRPDHLNGHIK 86
Query: 248 TVH 250
VH
Sbjct: 87 QVH 89
Score = 36.7 bits (86), Expect = 0.004
Identities = 28/123 (22%), Positives = 43/123 (34%), Gaps = 38/123 (30%)
Query: 499 PYKCTACNAAFNTKSALNVHRKTCPNLELLNRDLLPNQTGTDDEKKLEQKEMAKKPTVTE 558
C C F LN H+ + +G +KP
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLS--------------HSG-------------EKP---- 35
Query: 559 PAGEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQM 618
++C +C F + R+ H+R+ H+ K +C C K F+ L HIKQ+
Sbjct: 36 ------YSCPVCGLRFKRKDRMSYHVRS-HDGSVGKPYICQSCGKGFSRPDHLNGHIKQV 88
Query: 619 HGG 621
H G
Sbjct: 89 HSG 91
Score = 35.9 bits (84), Expect = 0.006
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 256 EKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTFTNKHLFRNHK 315
C+ C K F +LN+H +H+ G P Y+C C L F K H
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHKLSHS--GEKP-------YSCPVCGLRFKRKDRMSYHV 55
Score = 35.9 bits (84), Expect = 0.007
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 760 CYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQY--- 816
C CG ++ L H GE K +C + ++ H + SH G
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGE---KPYSCPVCGLRFKRKDRMSYHVR-SHDGSVGKP 65
Query: 817 HVCPHCGKKFTRKAELQLHIKGIH 840
++C CGK F+R L HIK +H
Sbjct: 66 YICQSCGKGFSRPDHLNGHIKQVH 89
Score = 33.2 bits (77), Expect = 0.055
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 18/96 (18%)
Query: 39 EKPEKSNLCFVCAKVFATRATLTLHIKQMHGGGQTDYVREKE-VCEICS---ARVVNLAE 94
C +C K+F L H K H G EK C +C R ++
Sbjct: 5 SSGVA---CEICGKIFRDVYHLNRH-KLSHSG-------EKPYSCPVCGLRFKRKDRMSY 53
Query: 95 HKLCH--EPPR-FTCEYCVKPFRRTQELRNHVKAVH 127
H H + + C+ C K F R L H+K VH
Sbjct: 54 HVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 29.4 bits (67), Expect = 1.4
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 14 FTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGG 70
++C +C F + R+ H+R+ H+ K +C C K F+ L HIKQ+H G
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRS-HDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 71.4 bits (176), Expect = 2e-15
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 819 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVHTNEKP 876
P CG+ F+ + L H K H+ +K++ C C K F F +L+ HM++H++ +
Sbjct: 12 FPGCGRIFSNRQYLNHHKKYQHIH---QKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD 68
Query: 877 YKCKDCGAAF 886
Y C+ G +
Sbjct: 69 YICEFSGPSS 78
Score = 52.2 bits (126), Expect = 1e-08
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 843 HQLEKTYICEY--CHKEFTFYNYLRRHMRV-HTNEKPYKCK--DCGAAFNHNVSLKNHK 896
C++ C + F+ YL H + H ++K + C CG +FN LK H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60
Score = 49.1 bits (118), Expect = 1e-07
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 436 YDCTF--CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY--CNKDFPFMKYLKRHLRVHS 491
C F CG+ F+ + LN H K H+ ++ F C C K F F K+LK H+++HS
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIH---QKSFSCPEPACGKSFNFKKHLKEHMKLHS 64
Query: 492 NDVQVPHPYKCTACNAAF 509
+ Y C +
Sbjct: 65 DT----RDYICEFSGPSS 78
Score = 49.1 bits (118), Expect = 1e-07
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 655 FTCEY--CVKPFRRTQELRNHVKAVHLTETPEERPRCE--VCGKTFGLKEYLRRHMRTHR 710
C++ C + F Q L +H K H+ + C CGK+F K++L+ HM+ H
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFS---CPEPACGKSFNFKKHLKEHMKLHS 64
Query: 711 VERKYKC-VCGDGF 723
R Y C G
Sbjct: 65 DTRDYICEFSGPSS 78
Score = 44.1 bits (105), Expect = 7e-06
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 685 ERP---RCEVCGKTFGLKEYLRRHMR-THRVERKYKC---VCGDGFNFNVSLKVHM 733
CG+ F ++YL H + H ++ + C CG FNF LK HM
Sbjct: 5 SSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60
Score = 42.2 bits (100), Expect = 3e-05
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 14/78 (17%)
Query: 104 FTCEY--CVKPFRRTQELRNHVKAVHLTETPEERPRCE--VCGKTFGLKEYLRRHMRTHR 159
C++ C + F Q L +H K H+ + C CGK+F K++L+ HM+ H
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFS---CPEPACGKSFNFKKHLKEHMKLHS 64
Query: 160 VERKYNGFESAALCFICG 177
R Y C G
Sbjct: 65 DTRDYI-------CEFSG 75
Score = 38.7 bits (91), Expect = 6e-04
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 422 HLQQHQKAAHSGVC-YDCTF--CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDF 477
+L H+K H + C CGK F K L H+K H + ++C++
Sbjct: 24 YLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL----HSDTRDYICEFSGPSS 78
Score = 37.9 bits (89), Expect = 0.001
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 16/83 (19%)
Query: 227 YNCKF--CSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQY--CNKEFPFQGYLNKHMKTHN 282
C F C F+ +N H K H+ +K F C C K F F+ +L +HMK H+
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIH---QKSFSCPEPACGKSFNFKKHLKEHMKLHS 64
Query: 283 HHGNGPGGGGHVTYTCKQCNLTF 305
Y C+ +
Sbjct: 65 --DTRD-------YICEFSGPSS 78
Score = 33.7 bits (78), Expect = 0.036
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 213 HLGTHQKVAHSGV-TYNCKF--CSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEF 268
+L H+K H +++C C F + H+K H + ++C++
Sbjct: 24 YLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL----HSDTRDYICEFSGPSS 78
Score = 33.3 bits (77), Expect = 0.037
Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 36/99 (36%)
Query: 50 CAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVVNLAEHKLCHEPPRFTCEY- 108
C ++F+ R L H K H + F+C
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIH-----------------------------QKS-FSCPEP 44
Query: 109 -CVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFG 146
C K F + L+ H+K +H CE G + G
Sbjct: 45 ACGKSFNFKKHLKEHMK-LHSDTRDYI---CEFSGPSSG 79
Score = 32.9 bits (76), Expect = 0.061
Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 15/68 (22%)
Query: 462 HQLEQRFVCQY--CNKDFPFMKYLKRHLRVHSNDVQVPH----PYKCT--ACNAAFNTKS 513
C + C + F +YL H + H + C AC +FN K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKY-------QHIHQKSFSCPEPACGKSFNFKK 54
Query: 514 ALNVHRKT 521
L H K
Sbjct: 55 HLKEHMKL 62
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 72.5 bits (179), Expect = 2e-15
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 819 CPH--CGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
CPH C K F + ++ H+ H + ++C C K F + L+RH VHT EKP
Sbjct: 8 CPHKGCTKMFRDNSAMRKHLH-THG----PRVHVCAECGKAFVESSKLKRHQLVHTGEKP 62
Query: 877 YKC--KDCGAAFNHNVSLKNHK 896
++C + CG F+ + +L+ H
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHV 84
Score = 72.2 bits (178), Expect = 3e-15
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 803 HLAIHKKHSHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTF 860
+ H H+H + HVC CGK F ++L+ H L H EK + C + C K F+
Sbjct: 22 AMRKHL-HTHGPRVHVCAECGKAFVESSKLKRH----QLVHTGEKPFQCTFEGCGKRFSL 76
Query: 861 YNYLRRHMRVHTNEKPYKC--KDCGAAFNHNVSLKNHK 896
LR H+R+HT ++PY C C F + +LK+H
Sbjct: 77 DFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 56.8 bits (138), Expect = 8e-10
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 642 NLAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEY 701
+ +H H P C C K F + +L+ H VH E P + CGK F L
Sbjct: 22 AMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQL-VHTGEKPFQCTFEG-CGKRFSLDFN 79
Query: 702 LRRHMRTHRVERKYKCV---CGDGFNFNVSLKVHM 733
LR H+R H +R Y C C F + +LK H+
Sbjct: 80 LRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 53.7 bits (130), Expect = 1e-08
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 655 FTCEY--CVKPFRRTQELRNHVKAVHLTETPEERP-RCEVCGKTFGLKEYLRRHMRTHRV 711
C + C K FR +R H+ H R C CGK F L+RH H
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLH-TH-----GPRVHVCAECGKAFVESSKLKRHQLVHTG 59
Query: 712 ERKYKCV---CGDGFNFNVSLKVHM 733
E+ ++C CG F+ + +L+ H+
Sbjct: 60 EKPFQCTFEGCGKRFSLDFNLRTHV 84
Score = 52.5 bits (127), Expect = 2e-08
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 20/124 (16%)
Query: 763 CGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICS---AEVVHLAIHKKHSHSGQY-HV 818
C ++ S ++ H+ HG C C E L H+ H+G+
Sbjct: 13 CTKMFRDNSAMRKHLHT-HGPRVHV------CAECGKAFVESSKLKRHQL-VHTGEKPFQ 64
Query: 819 CPH--CGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVHTNE 874
C CGK+F+ L+ H++ IH ++ Y+C + C+K+F L+ H+ H
Sbjct: 65 CTFEGCGKRFSLDFNLRTHVR-IHTG---DRPYVCPFDGCNKKFAQSTNLKSHILTHAKA 120
Query: 875 KPYK 878
K +
Sbjct: 121 KNNQ 124
Score = 48.7 bits (117), Expect = 5e-07
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 13/104 (12%)
Query: 422 HLQQHQKAAHSGVCYDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY--CNKDFPF 479
+++H H + C CGK F ++L H L H E+ F C + C K F
Sbjct: 22 AMRKHLHT-HGPRVHVCAECGKAFVESSKLKRH----QLVHTGEKPFQCTFEGCGKRFSL 76
Query: 480 MKYLKRHLRVHSNDVQVPHPYKCTA--CNAAFNTKSALNVHRKT 521
L+ H+R+H+ D PY C CN F + L H T
Sbjct: 77 DFNLRTHVRIHTGD----RPYVCPFDGCNKKFAQSTNLKSHILT 116
Score = 47.5 bits (114), Expect = 1e-06
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 13/90 (14%)
Query: 436 YDCTF--CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSND 493
C C K F + + H+ H + VC C K F LKRH VH+ +
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLH-TH----GPRVHVCAECGKAFVESSKLKRHQLVHTGE 60
Query: 494 VQVPHPYKCTA--CNAAFNTKSALNVHRKT 521
P++CT C F+ L H +
Sbjct: 61 ----KPFQCTFEGCGKRFSLDFNLRTHVRI 86
Score = 43.7 bits (104), Expect = 3e-05
Identities = 36/159 (22%), Positives = 54/159 (33%), Gaps = 53/159 (33%)
Query: 133 EERP---RCEVCGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICG--FYHKHKKMIY 187
E R + C K F +R+H+ TH R + C CG F
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHG-PRVHV-------CAECGKAFVESS----- 48
Query: 188 RHIKEHIEPKKQEKKVCDICSAEVIHLGTHQKVAHSGVT-YNCKF--CSMKFTRVGQMNI 244
L HQ V H+G + C F C +F+ +
Sbjct: 49 -------------------------KLKRHQLV-HTGEKPFQCTFEGCGKRFSLDFNLRT 82
Query: 245 HIKTVHLKHMLEKKFVCQY--CNKEFPFQGYLNKHMKTH 281
H++ H ++ +VC + CNK+F L H+ TH
Sbjct: 83 HVRI----HTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 43.3 bits (103), Expect = 3e-05
Identities = 34/124 (27%), Positives = 47/124 (37%), Gaps = 20/124 (16%)
Query: 601 CAKVFATRATLTLHIKQMHGGGQTDYVREKE-VCEICS---ARVVNLAEHKLCH--EPPR 654
C K+F + + H HG + VC C L H+L H E P
Sbjct: 13 CTKMFRDNSAMRKH-LHTHG--------PRVHVCAECGKAFVESSKLKRHQLVHTGEKP- 62
Query: 655 FTCEY--CVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVE 712
F C + C K F LR HV+ +H + P P C K F L+ H+ TH
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPYVCPFDG-CNKKFAQSTNLKSHILTHAKA 120
Query: 713 RKYK 716
+ +
Sbjct: 121 KNNQ 124
Score = 42.5 bits (101), Expect = 6e-05
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 91 NLAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEY 150
+ +H H P C C K F + +L+ H VH E P + CGK F L
Sbjct: 22 AMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQL-VHTGEKPFQCTFEG-CGKRFSLDFN 79
Query: 151 LRRHMRTHRVERKY 164
LR H+R H +R Y
Sbjct: 80 LRTHVRIHTGDRPY 93
Score = 41.3 bits (98), Expect = 2e-04
Identities = 34/123 (27%), Positives = 46/123 (37%), Gaps = 20/123 (16%)
Query: 50 CAKVFATRATLTLHIKQMHGGGQTDYVREKE-VCEICS---ARVVNLAEHKLCH--EPPR 103
C K+F + + H HG + VC C L H+L H E P
Sbjct: 13 CTKMFRDNSAMRKH-LHTHG--------PRVHVCAECGKAFVESSKLKRHQLVHTGEKP- 62
Query: 104 FTCEY--CVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVE 161
F C + C K F LR HV+ +H + P P C K F L+ H+ TH
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPYVCPFDG-CNKKFAQSTNLKSHILTHAKA 120
Query: 162 RKY 164
+
Sbjct: 121 KNN 123
Score = 39.4 bits (93), Expect = 8e-04
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 104 FTCEY--CVKPFRRTQELRNHVKAVHLTETPEERP-RCEVCGKTFGLKEYLRRHMRTHRV 160
C + C K FR +R H+ H R C CGK F L+RH H
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLH-TH-----GPRVHVCAECGKAFVESSKLKRHQLVHTG 59
Query: 161 ERKY 164
E+ +
Sbjct: 60 EKPF 63
Score = 38.7 bits (91), Expect = 0.002
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 465 EQRFVCQY--CNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ C + C K F +++HL H P + C C AF S L H+
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTHG-----PRVHVCAECGKAFVESSKLKRHQLV 56
Score = 35.6 bits (83), Expect = 0.020
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 422 HLQQHQKAAHSG-VCYDCTF--CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY--CNKD 476
L++HQ H+G + CTF CGK F+ L H++ H ++ +VC + CNK
Sbjct: 49 KLKRHQLV-HTGEKPFQCTFEGCGKRFSLDFNLRTHVRI----HTGDRPYVCPFDGCNKK 103
Query: 477 FPFMKYLKRHLRVH 490
F LK H+ H
Sbjct: 104 FAQSTNLKSHILTH 117
Score = 35.2 bits (82), Expect = 0.020
Identities = 23/94 (24%), Positives = 30/94 (31%), Gaps = 18/94 (19%)
Query: 226 TYNCKF--CSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMKTHNH 283
T C C+ F M H+ T H + VC C K F L +H H
Sbjct: 5 TIACPHKGCTKMFRDNSAMRKHLHT----HG-PRVHVCAECGKAFVESSKLKRHQLVHT- 58
Query: 284 HGNGPGGGGHVTYTC--KQCNLTFTNKHLFRNHK 315
G P + C + C F+ R H
Sbjct: 59 -GEKP-------FQCTFEGCGKRFSLDFNLRTHV 84
Score = 32.5 bits (75), Expect = 0.17
Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 874 EKPYKC--KDCGAAFNHNVSLKNHK 896
+ C K C F N +++ H
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHL 27
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 69.0 bits (170), Expect = 8e-15
Identities = 23/51 (45%), Positives = 28/51 (54%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
+K Y C+ C F + L H VHT EKPY+C CGA FN +LK H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65
Score = 57.5 bits (140), Expect = 1e-10
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 803 HLAIHKKHSHSGQY-HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFY 861
H H + C C F K L H K +H EK Y C C +F
Sbjct: 4 HHHHHSH-MTHSDKPYKCDRCQASFRYKGNLASH-KTVHTG---EKPYRCNICGAQFNRP 58
Query: 862 NYLRRHMRVHTNEKPY 877
L+ H R+H+ EKPY
Sbjct: 59 ANLKTHTRIHSGEKPY 74
Score = 47.1 bits (113), Expect = 5e-07
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKC-VCGDGFNFNVSLKVHM 733
++P +C+ C +F K L H H E+ Y+C +CG FN +LK H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65
Score = 43.6 bits (104), Expect = 7e-06
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 91 NLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLK 148
+ H + P + C+ C FR L +H K VH E P C +CG F
Sbjct: 4 HHHHHSHMTHSDKP-YKCDRCQASFRYKGNLASH-KTVHTGEKPYR---CNICGAQFNRP 58
Query: 149 EYLRRHMRTHRVERKY 164
L+ H R H E+ Y
Sbjct: 59 ANLKTHTRIHSGEKPY 74
Score = 43.6 bits (104), Expect = 7e-06
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 642 NLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLK 699
+ H + P + C+ C FR L +H K VH E P C +CG F
Sbjct: 4 HHHHHSHMTHSDKP-YKCDRCQASFRYKGNLASH-KTVHTGEKPYR---CNICGAQFNRP 58
Query: 700 EYLRRHMRTHRVERKY 715
L+ H R H E+ Y
Sbjct: 59 ANLKTHTRIHSGEKPY 74
Score = 37.8 bits (89), Expect = 0.001
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 470 CQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
C C F + L H VH+ + PY+C C A FN + L H +
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGE----KPYRCNICGAQFNRPANLKTHTRI 67
Score = 37.4 bits (88), Expect = 0.001
Identities = 19/70 (27%), Positives = 22/70 (31%), Gaps = 6/70 (8%)
Query: 422 HLQQHQKAAHSG-VCYDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFM 480
H H Y C C F K L H H E+ + C C F
Sbjct: 4 HHHHHSHM-THSDKPYKCDRCQASFRYKGNLASHKTV----HTGEKPYRCNICGAQFNRP 58
Query: 481 KYLKRHLRVH 490
LK H R+H
Sbjct: 59 ANLKTHTRIH 68
Score = 35.9 bits (84), Expect = 0.005
Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 6/70 (8%)
Query: 213 HLGTHQKVAHSG-VTYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQ 271
H H + Y C C F G + H H EK + C C +F
Sbjct: 4 HHHHHSHM-THSDKPYKCDRCQASFRYKGNLASHKTV----HTGEKPYRCNICGAQFNRP 58
Query: 272 GYLNKHMKTH 281
L H + H
Sbjct: 59 ANLKTHTRIH 68
Score = 33.2 bits (77), Expect = 0.047
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 482 YLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ H + +D PYKC C A+F K L H+
Sbjct: 4 HHHHHSHMTHSD----KPYKCDRCQASFRYKGNLASHKTV 39
Score = 32.4 bits (75), Expect = 0.072
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 698 LKEYLRRHMRTHRVERKYKC-VCGDGFNFNVSLKVHM 733
+ + H ++ YKC C F + +L H
Sbjct: 1 MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHK 37
Score = 31.3 bits (72), Expect = 0.20
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 9/60 (15%)
Query: 256 EKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTFTNKHLFRNHK 315
+K + C C F ++G L H H G P Y C C F + H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHT--GEKP-------YRCNICGAQFNRPANLKTHT 65
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 67.7 bits (166), Expect = 5e-14
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 817 HVC--PHCGKKFTRKAELQLHIKGIHLKHQLEKTYIC--EYCHKEFTFYNYLRRHMRVHT 872
H C P C K +T+ + L+ H++ H EK Y C E C F + L RH R HT
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLR----THTGEKPYKCTWEGCDWRFARSDELTRHYRKHT 71
Query: 873 NEKPYKCKDCGAAFNHNVSLKNHK 896
KP++C C +F+ + L H
Sbjct: 72 GAKPFQCGVCNRSFSRSDHLALHM 95
Score = 51.1 bits (123), Expect = 4e-08
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 803 HLAIHKKHSHSGQY-HVC--PHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFT 859
HL H +H+G+ + C C +F R EL H + KH K + C C++ F+
Sbjct: 32 HLKAHL-RTHTGEKPYKCTWEGCDWRFARSDELTRHYR----KHTGAKPFQCGVCNRSFS 86
Query: 860 FYNYLRRHMRVHTN 873
++L HM+ H N
Sbjct: 87 RSDHLALHMKRHQN 100
Score = 45.7 bits (109), Expect = 3e-06
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 12/90 (13%)
Query: 436 YDCTF--CGKGFTRKAELNIHIKAVHLKHQLEQRFVC--QYCNKDFPFMKYLKRHLRVHS 491
+ C + C K +T+ + L H++ H E+ + C + C+ F L RH R H+
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLR----THTGEKPYKCTWEGCDWRFARSDELTRHYRKHT 71
Query: 492 NDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
P++C CN +F+ L +H K
Sbjct: 72 GA----KPFQCGVCNRSFSRSDHLALHMKR 97
Score = 45.7 bits (109), Expect = 3e-06
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 642 NLAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERP-RC--EVCGKTFGL 698
E + H C K + ++ L+ H++ T T E+P +C E C F
Sbjct: 8 PDLEKRRIH---YCDYPGCTKVYTKSSHLKAHLR----THT-GEKPYKCTWEGCDWRFAR 59
Query: 699 KEYLRRHMRTHRVERKYKC-VCGDGFNFNVSLKVHM 733
+ L RH R H + ++C VC F+ + L +HM
Sbjct: 60 SDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95
Score = 44.9 bits (107), Expect = 6e-06
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 213 HLGTHQKVAHSGVT-YNC--KFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFP 269
HL H + H+G Y C + C +F R ++ H + H K F C CN+ F
Sbjct: 32 HLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRHYRK----HTGAKPFQCGVCNRSFS 86
Query: 270 FQGYLNKHMKTH 281
+L HMK H
Sbjct: 87 RSDHLALHMKRH 98
Score = 43.8 bits (104), Expect = 1e-05
Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 17/109 (15%)
Query: 54 FATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVVNLAEHKLCH--EPPRFTC--EYC 109
+ + + + C + +L H H E P + C E C
Sbjct: 3 SGSSGPDLEKRRI--------HYCDYPGCTKVYTKSSHLKAHLRTHTGEKP-YKCTWEGC 53
Query: 110 VKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTH 158
F R+ EL H + T + +C VC ++F ++L HM+ H
Sbjct: 54 DWRFARSDELTRHYR----KHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 43.8 bits (104), Expect = 1e-05
Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 17/109 (15%)
Query: 605 FATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVVNLAEHKLCH--EPPRFTC--EYC 660
+ + + + C + +L H H E P + C E C
Sbjct: 3 SGSSGPDLEKRRI--------HYCDYPGCTKVYTKSSHLKAHLRTHTGEKP-YKCTWEGC 53
Query: 661 VKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTH 709
F R+ EL H + T + +C VC ++F ++L HM+ H
Sbjct: 54 DWRFARSDELTRHYR----KHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 43.0 bits (102), Expect = 3e-05
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 422 HLQQHQKAAHSGVC-YDCTF--CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFP 478
HL+ H + H+G Y CT+ C F R EL H + KH + F C CN+ F
Sbjct: 32 HLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRHYR----KHTGAKPFQCGVCNRSFS 86
Query: 479 FMKYLKRHLRVHSN 492
+L H++ H N
Sbjct: 87 RSDHLALHMKRHQN 100
Score = 36.5 bits (85), Expect = 0.005
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 18/90 (20%)
Query: 91 NLAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERP-RC--EVCGKTFGL 147
E + H C K + ++ L+ H++ T T E+P +C E C F
Sbjct: 8 PDLEKRRIH---YCDYPGCTKVYTKSSHLKAHLR----THT-GEKPYKCTWEGCDWRFAR 59
Query: 148 KEYLRRHMRTHRVERKYNGFESAALCFICG 177
+ L RH R H + + C +C
Sbjct: 60 SDELTRHYRKHTGAKPFQ-------CGVCN 82
Score = 34.5 bits (80), Expect = 0.029
Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 38/124 (30%)
Query: 129 TETPEERP-RCEV--CGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICGFYHKHKKM 185
+ + R C+ C K + +L+ H+RTH E+ Y C +
Sbjct: 8 PDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPY----------KCTW------- 50
Query: 186 IYRHIKEHIEPKKQEKKVCDICSAEVIHLGTHQKVAHSGVT-YNCKFCSMKFTRVGQMNI 244
+ CD A L H + H+G + C C+ F+R + +
Sbjct: 51 ----------------EGCDWRFARSDELTRHYRK-HTGAKPFQCGVCNRSFSRSDHLAL 93
Query: 245 HIKT 248
H+K
Sbjct: 94 HMKR 97
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 66.8 bits (164), Expect = 9e-14
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 812 HSGQY-HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYIC--EYCHKEFTFYNYLRRHM 868
+ + CGK +T+ + L+ H++ H EK Y C + C +F + L RH
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLR----THTGEKPYHCDWDGCGWKFARSDELTRHY 57
Query: 869 RVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
R HT +P++C+ C AF+ + L H
Sbjct: 58 RKHTGHRPFQCQKCDRAFSRSDHLALHM 85
Score = 52.5 bits (127), Expect = 1e-08
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 842 KHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCK--DCGAAFNHNVSLKNHK 896
K T C K +T ++L+ H+R HT EKPY C CG F + L H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY 57
Score = 49.8 bits (120), Expect = 8e-08
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY--CNKDFPFMKYLKRHLRVHSND 493
D CGK +T+ + L H++ H E+ + C + C F L RH R H+
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLR----THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 494 VQVPHPYKCTACNAAFNTKSALNVHRKT 521
P++C C+ AF+ L +H K
Sbjct: 64 ----RPFQCQKCDRAFSRSDHLALHMKR 87
Score = 46.0 bits (110), Expect = 2e-06
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 803 HLAIHKKHSHSGQY-HVC--PHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFT 859
HL H + +H+G+ + C CG KF R EL H + KH + + C+ C + F+
Sbjct: 22 HLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYR----KHTGHRPFQCQKCDRAFS 76
Query: 860 FYNYLRRHMRVH 871
++L HM+ H
Sbjct: 77 RSDHLALHMKRH 88
Score = 43.7 bits (104), Expect = 1e-05
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 654 RFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRC--EVCGKTFGLKEYLRRHMRTHRV 711
C K + ++ L+ H++ H E P C + CG F + L RH R H
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLR-THTGEKPYH---CDWDGCGWKFARSDELTRHYRKHTG 62
Query: 712 ERKYKC-VCGDGFNFNVSLKVHM 733
R ++C C F+ + L +HM
Sbjct: 63 HRPFQCQKCDRAFSRSDHLALHM 85
Score = 41.4 bits (98), Expect = 8e-05
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 213 HLGTHQKVAHSGVT-YNCK--FCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFP 269
HL H + H+G Y+C C KF R ++ H + H + F CQ C++ F
Sbjct: 22 HLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYRK----HTGHRPFQCQKCDRAFS 76
Query: 270 FQGYLNKHMKTH 281
+L HMK H
Sbjct: 77 RSDHLALHMKRH 88
Score = 39.4 bits (93), Expect = 4e-04
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 91 NLAEHKLCH--EPPRFTC--EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFG 146
+L H H E P + C + C F R+ EL H + T +C+ C + F
Sbjct: 22 HLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRHYR----KHTGHRPFQCQKCDRAFS 76
Query: 147 LKEYLRRHMRTH 158
++L HM+ H
Sbjct: 77 RSDHLALHMKRH 88
Score = 39.4 bits (93), Expect = 4e-04
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 642 NLAEHKLCH--EPPRFTC--EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFG 697
+L H H E P + C + C F R+ EL H + T +C+ C + F
Sbjct: 22 HLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRHYR----KHTGHRPFQCQKCDRAFS 76
Query: 698 LKEYLRRHMRTH 709
++L HM+ H
Sbjct: 77 RSDHLALHMKRH 88
Score = 35.6 bits (83), Expect = 0.010
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 13/77 (16%)
Query: 103 RFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRC--EVCGKTFGLKEYLRRHMRTHRV 160
C K + ++ L+ H++ H E P C + CG F + L RH R H
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLR-THTGEKPYH---CDWDGCGWKFARSDELTRHYRKHTG 62
Query: 161 ERKYNGFESAALCFICG 177
R + C C
Sbjct: 63 HRPFQ-------CQKCD 72
Score = 35.2 bits (82), Expect = 0.012
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 15/82 (18%)
Query: 227 YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQY--CNKEFPFQGYLNKHMKTHNHH 284
+ C +T+ + H++T H EK + C + C +F L +H + H
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRT----HTGEKPYHCDWDGCGWKFARSDELTRHYRKHT-- 61
Query: 285 GNGPGGGGHVTYTCKQCNLTFT 306
GH + C++C+ F+
Sbjct: 62 -------GHRPFQCQKCDRAFS 76
Score = 32.9 bits (76), Expect = 0.065
Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 461 KHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCT--ACNAAFNTKSALNVH 518
K C K + +LK HLR H+ + PY C C F L H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGE----KPYHCDWDGCGWKFARSDELTRH 56
Query: 519 RKT 521
+
Sbjct: 57 YRK 59
Score = 30.6 bits (70), Expect = 0.57
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 422 HLQQHQKAAHSGV-CYDCTFCGKGFTRKAELNIHIKAVHL 460
L +H + H+G + C C + F+R L +H+K H
Sbjct: 52 ELTRHYRK-HTGHRPFQCQKCDRAFSRSDHLALHMK-RHF 89
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 66.0 bits (162), Expect = 1e-13
Identities = 28/54 (51%), Positives = 34/54 (62%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
H EK Y C C K F+ + L +H RVHT EKPYKC +CG AF+ N L NH+
Sbjct: 9 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Score = 50.5 bits (122), Expect = 3e-08
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 819 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPY 877
C CGK F+R + L H H EK Y C C K F+ + L H R+HT+
Sbjct: 17 CVECGKAFSRSSILVQH----QRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 49.8 bits (120), Expect = 5e-08
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 864 LRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
+H+ EKPY C +CG AF+ + L H+
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQ 34
Score = 44.0 bits (105), Expect = 5e-06
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
E+P C CGK F L +H R H E+ YKC CG F+ N L H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 39.8 bits (94), Expect = 2e-04
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 462 HQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
H E+ + C C K F L +H RVH+ + PYKC C AF+ S L H++
Sbjct: 9 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE----KPYKCLECGKAFSQNSGLINHQRI 64
Score = 39.4 bits (93), Expect = 3e-04
Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 92 LAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKE 149
+ H E P + C C K F R+ L H + VH E P + C CGK F
Sbjct: 2 SSGSSGIHSGEKP-YGCVECGKAFSRSSILVQHQR-VHTGEKPYK---CLECGKAFSQNS 56
Query: 150 YLRRHMRTHRVERKY 164
L H R H
Sbjct: 57 GLINHQRIHTSGPSS 71
Score = 39.4 bits (93), Expect = 3e-04
Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 643 LAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKE 700
+ H E P + C C K F R+ L H + VH E P + C CGK F
Sbjct: 2 SSGSSGIHSGEKP-YGCVECGKAFSRSSILVQHQR-VHTGEKPYK---CLECGKAFSQNS 56
Query: 701 YLRRHMRTHRVERKY 715
L H R H
Sbjct: 57 GLINHQRIHTSGPSS 71
Score = 36.7 bits (86), Expect = 0.002
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 423 LQQHQKAAHSGVC-YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMK 481
HSG Y C CGK F+R + L H H E+ + C C K F
Sbjct: 2 SSGSSGI-HSGEKPYGCVECGKAFSRSSILVQH----QRVHTGEKPYKCLECGKAFSQNS 56
Query: 482 YLKRHLRVHS 491
L H R+H+
Sbjct: 57 GLINHQRIHT 66
Score = 28.6 bits (65), Expect = 1.8
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 214 LGTHQKVAHSGVT-YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQG 272
+ HSG Y C C F+R + H + H EK + C C K F
Sbjct: 2 SSGSSGI-HSGEKPYGCVECGKAFSRSSILVQHQRV----HTGEKPYKCLECGKAFSQNS 56
Query: 273 YLNKHMKTH 281
L H + H
Sbjct: 57 GLINHQRIH 65
Score = 28.2 bits (64), Expect = 2.4
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 253 HMLEKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTFTNKHLFR 312
H EK + C C K F L +H + H G P Y C +C F+
Sbjct: 9 HSGEKPYGCVECGKAFSRSSILVQHQRVHT--GEKP-------YKCLECGKAFSQNSGLI 59
Query: 313 NHK 315
NH+
Sbjct: 60 NHQ 62
Score = 28.2 bits (64), Expect = 2.5
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 702 LRRHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
H E+ Y CV CG F+ + L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQH 33
Score = 27.8 bits (63), Expect = 2.9
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 561 GEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLH 614
GE+ + C C F + L H R EKP K C C K F+ + L H
Sbjct: 11 GEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYK---CLECGKAFSQNSGLINH 61
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 65.2 bits (160), Expect = 2e-13
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
+ Y C+ C K F+ + L +H R HT EKPYKC +CG AF L H
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHH 66
Score = 52.4 bits (127), Expect = 6e-09
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 864 LRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
R + YKC +CG +F+H+ L H+
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHR 38
Score = 52.1 bits (126), Expect = 8e-09
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 803 HLAIHKKHSHSGQ--YHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTF 860
+ + Y C CGK F+ ++L H H EK Y C+ C K F
Sbjct: 5 SSGRSEWQ-QRERRRYK-CDECGKSFSHSSDLSKH----RRTHTGEKPYKCDECGKAFIQ 58
Query: 861 YNYLRRHMRVHTNEKPYK 878
++L H RVHT P
Sbjct: 59 RSHLIGHHRVHTGSGPSS 76
Score = 44.4 bits (106), Expect = 4e-06
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
R +C+ CGK+F L +H RTH E+ YKC CG F L H
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 41.7 bits (99), Expect = 4e-05
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 642 NLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLK 699
+ + + C+ C K F + +L H + H E P + C+ CGK F +
Sbjct: 5 SSGRSEWQQRERRR-YKCDECGKSFSHSSDLSKH-RRTHTGEKPYK---CDECGKAFIQR 59
Query: 700 EYLRRHMRTHRVERKYK 716
+L H R H
Sbjct: 60 SHLIGHHRVHTGSGPSS 76
Score = 41.7 bits (99), Expect = 5e-05
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 91 NLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLK 148
+ + + C+ C K F + +L H + H E P + C+ CGK F +
Sbjct: 5 SSGRSEWQQRERRR-YKCDECGKSFSHSSDLSKH-RRTHTGEKPYK---CDECGKAFIQR 59
Query: 149 EYLRRHMRTHRVERKYNG 166
+L H R H +G
Sbjct: 60 SHLIGHHRVHTGSGPSSG 77
Score = 36.7 bits (86), Expect = 0.003
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 465 EQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+R+ C C K F L +H R H+ + PYKC C AF +S L H +
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGE----KPYKCDECGKAFIQRSHLIGHHRV 68
Score = 34.7 bits (81), Expect = 0.014
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 422 HLQQHQKAAHSGVC-YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFM 480
+ + Y C CGK F+ ++L+ H H E+ + C C K F
Sbjct: 5 SSGRSEWQ-QRERRRYKCDECGKSFSHSSDLSKH----RRTHTGEKPYKCDECGKAFIQR 59
Query: 481 KYLKRHLRVH 490
+L H RVH
Sbjct: 60 SHLIGHHRVH 69
Score = 32.0 bits (74), Expect = 0.11
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 702 LRRHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
R R R+YKC CG F+ + L H
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKH 37
Score = 31.6 bits (73), Expect = 0.14
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 483 LKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
R YKC C +F+ S L+ HR+T
Sbjct: 6 SGRSEWQQRER----RRYKCDECGKSFSHSSDLSKHRRT 40
Score = 28.9 bits (66), Expect = 1.5
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 213 HLGTHQKVAHSGVT-YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQ 271
G + Y C C F+ ++ H +T H EK + C C K F +
Sbjct: 5 SSGRSEWQ-QRERRRYKCDECGKSFSHSSDLSKHRRT----HTGEKPYKCDECGKAFIQR 59
Query: 272 GYLNKHMKTH 281
+L H + H
Sbjct: 60 SHLIGHHRVH 69
Score = 27.8 bits (63), Expect = 3.5
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 256 EKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTFTNKHLFRNHK 315
+++ C C K F L+KH +TH G P Y C +C F + H
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHT--GEKP-------YKCDECGKAFIQRSHLIGHH 66
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 64.4 bits (158), Expect = 4e-13
Identities = 13/55 (23%), Positives = 19/55 (34%)
Query: 842 KHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
C C + LR H R+H ++P+KC C +L H
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM 57
Score = 52.9 bits (128), Expect = 4e-09
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 819 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYK 878
C C + KA L++H + H ++ + C YC + + L +HM+ +
Sbjct: 12 CSECSYSCSSKAALRIHER----IHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP 67
Query: 879 C 879
Sbjct: 68 S 68
Score = 48.6 bits (117), Expect = 1e-07
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKC-VCGDGFNFNVSLKVHMAK 735
P +C C + K LR H R H +R +KC C +L HM K
Sbjct: 7 GHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Score = 41.7 bits (99), Expect = 3e-05
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 869 RVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
++ P KC +C + + +L+ H+
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHE 29
Score = 40.9 bits (97), Expect = 8e-05
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 461 KHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRK 520
C C+ L+ H R+H D P+KC C+ S L+ H K
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTD----RPFKCNYCSFDTKQPSNLSKHMK 58
Query: 521 T 521
Sbjct: 59 K 59
Score = 38.2 bits (90), Expect = 5e-04
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVH 490
C+ C + KA L IH + H ++ F C YC+ D L +H++
Sbjct: 10 EKCSECSYSCSSKAALRIHER----IHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 37.5 bits (88), Expect = 0.001
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICGFYHKHKKMIYRHIKE 192
P +C C + K LR H R H +R + C C F K + +H+K+
Sbjct: 7 GHPEKCSECSYSCSSKAALRIHERIHCTDRPFK-------CNYCSFDTKQPSNLSKHMKK 59
Query: 193 H 193
Sbjct: 60 F 60
Score = 37.1 bits (87), Expect = 0.002
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 104 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTH 158
C C LR H + +H T+ P + C C L +HM+
Sbjct: 10 EKCSECSYSCSSKAALRIH-ERIHCTDRPFK---CNYCSFDTKQPSNLSKHMKKF 60
Score = 37.1 bits (87), Expect = 0.002
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 655 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTH 709
C C LR H + +H T+ P + C C L +HM+
Sbjct: 10 EKCSECSYSCSSKAALRIH-ERIHCTDRPFK---CNYCSFDTKQPSNLSKHMKKF 60
Score = 35.2 bits (82), Expect = 0.007
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 227 YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMKTH 281
C CS + + IH + H ++ F C YC+ + L+KHMK
Sbjct: 10 EKCSECSYSCSSKAALRIHERI----HCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 33.6 bits (78), Expect = 0.028
Identities = 9/64 (14%), Positives = 15/64 (23%), Gaps = 9/64 (14%)
Query: 252 KHMLEKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTFTNKHLF 311
C C+ + L H + H + P + C C+
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHC--TDRP-------FKCNYCSFDTKQPSNL 53
Query: 312 RNHK 315
H
Sbjct: 54 SKHM 57
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 64.1 bits (157), Expect = 6e-13
Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNE--KPYKCKDCGAAFNHNVSLKNH 895
EK Y C CH FT ++ H+ E + C C L H
Sbjct: 13 EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
Score = 59.1 bits (144), Expect = 3e-11
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 803 HLAIHKKHSHSGQ--YHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTF 860
+ +HSG+ Y C C +FT+ +++HI + + C +C
Sbjct: 2 SSGSSGR-THSGEKPYE-CYICHARFTQSGTMKMHIL-QK-HTENVAKFHCPHCDTVIAR 57
Query: 861 YNYLRRHMR-VHTNEKPY 877
+ L H+R H+ P
Sbjct: 58 KSDLGVHLRKQHSYSGPS 75
Score = 54.8 bits (133), Expect = 9e-10
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 864 LRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
R H+ EKPY+C C A F + ++K H
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHI 35
Score = 47.1 bits (113), Expect = 5e-07
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVE--RKYKC-VCGDGFNFNVSLKVHM 733
E+P C +C F ++ H+ E K+ C C L VH+
Sbjct: 13 EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
Score = 45.6 bits (109), Expect = 2e-06
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 213 HLGTHQKVAHSGVT-YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQ 271
G+ + HSG Y C C +FT+ G M +HI H ++ KF C +C+ +
Sbjct: 2 SSGSSGRT-HSGEKPYECYICHARFTQSGTMKMHILQKHTEN--VAKFHCPHCDTVIARK 58
Query: 272 GYLNKHMKTHNHHGNGP 288
L H++ H +GP
Sbjct: 59 SDLGVHLRKQ-HSYSGP 74
Score = 44.8 bits (107), Expect = 4e-06
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 8/80 (10%)
Query: 91 NLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERP-RCEVCGKTFGL 147
+ H E P + C C F ++ ++ H+ TE C C
Sbjct: 2 SSGSSGRTHSGEKP-YECYICHARFTQSGTMKMHIL-QKHTE--NVAKFHCPHCDTVIAR 57
Query: 148 KEYLRRHMRT-HRVERKYNG 166
K L H+R H +G
Sbjct: 58 KSDLGVHLRKQHSYSGPSSG 77
Score = 44.0 bits (105), Expect = 6e-06
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 7/71 (9%)
Query: 642 NLAEHKLCH--EPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERP-RCEVCGKTFGL 698
+ H E P + C C F ++ ++ H+ TE C C
Sbjct: 2 SSGSSGRTHSGEKP-YECYICHARFTQSGTMKMHIL-QKHTE--NVAKFHCPHCDTVIAR 57
Query: 699 KEYLRRHMRTH 709
K L H+R
Sbjct: 58 KSDLGVHLRKQ 68
Score = 43.3 bits (103), Expect = 1e-05
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 468 FVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ C C+ F +K H+ + + C C+ KS L VH +
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTEN--VAKFHCPHCDTVIARKSDLGVHLRK 67
Score = 42.1 bits (100), Expect = 4e-05
Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 11/75 (14%)
Query: 240 GQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGHVTYTCK 299
G +T H EK + C C+ F G + H+ + + C
Sbjct: 1 GSSGSSGRT----HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAK-------FHCP 49
Query: 300 QCNLTFTNKHLFRNH 314
C+ K H
Sbjct: 50 HCDTVIARKSDLGVH 64
Score = 40.2 bits (95), Expect = 2e-04
Identities = 20/111 (18%), Positives = 28/111 (25%), Gaps = 40/111 (36%)
Query: 483 LKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKTCPNLELLNRDLLPNQTGTDDE 542
R HS + PY+C C+A F + +H + +
Sbjct: 3 SGSSGRTHSGE----KPYECYICHARFTQSGTMKMHILQ--------------KHTEN-- 42
Query: 543 KKLEQKEMAKKPTVTEPAGEEAFTCRICQAVFDKYVRLCGHLRTVH-NEKP 592
F C C V + L HLR H P
Sbjct: 43 ---------VAK----------FHCPHCDTVIARKSDLGVHLRKQHSYSGP 74
Score = 40.2 bits (95), Expect = 2e-04
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 422 HLQQHQKAAHSGVC-YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQR--FVCQYCNKDFP 478
+ HSG Y+C C FT+ + +HI + E F C +C+
Sbjct: 2 SSGSSGRT-HSGEKPYECYICHARFTQSGTMKMHIL----QKHTENVAKFHCPHCDTVIA 56
Query: 479 FMKYLKRHLR-VHSND 493
L HLR HS
Sbjct: 57 RKSDLGVHLRKQHSYS 72
Score = 39.8 bits (94), Expect = 2e-04
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 15/81 (18%)
Query: 702 LRRHMRTHRVERKYKC-VCGDGFNFNVSLKVHMAKCAFYLKSLEKEGESDHGGYETSSLC 760
RTH E+ Y+C +C F + ++K+H+ H C
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHI--------------LQKHTENVAKFHC 48
Query: 761 YHCGYYSKNRSTLKNHVRVEH 781
HC +S L H+R +H
Sbjct: 49 PHCDTVIARKSDLGVHLRKQH 69
Score = 37.5 bits (88), Expect = 0.001
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 11/74 (14%)
Query: 772 TLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKH--SHSGQY---HVCPHCGKKF 826
+ + R GE + C IC A K H + CPHC
Sbjct: 2 SSGSSGRTHSGEKPYE------CYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVI 55
Query: 827 TRKAELQLHIKGIH 840
RK++L +H++ H
Sbjct: 56 ARKSDLGVHLRKQH 69
Score = 36.7 bits (86), Expect = 0.003
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 411 KICDICCAEVLHLQQHQKAAHSGVC--YDCTFCGKGFTRKAELNIHIKAVH 459
IC + ++ H H+ + C C RK++L +H++ H
Sbjct: 19 YICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 35.2 bits (82), Expect = 0.008
Identities = 17/102 (16%), Positives = 27/102 (26%), Gaps = 37/102 (36%)
Query: 151 LRRHMRTHRVERKYNGFESAALCFICG--FYHKHKKMIYRHIKEHIEPKKQEKKVCDICS 208
RTH E+ Y C+IC F +K HI
Sbjct: 3 SGSSGRTHSGEKPYE-------CYICHARFTQSG------TMKMHIL------------- 36
Query: 209 AEVIHLGTHQKVAHSGVTYNCKFCSMKFTRVGQMNIHIKTVH 250
+ ++C C R + +H++ H
Sbjct: 37 ---QKHTENVAK------FHCPHCDTVIARKSDLGVHLRKQH 69
Score = 34.8 bits (81), Expect = 0.012
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 561 GEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHG 620
GE+ + C IC A F + + H+ + + C C V A ++ L +H+++ H
Sbjct: 12 GEKPYECYICHARFTQSGTMKMHILQ-KHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70
Query: 621 G 621
Sbjct: 71 Y 71
Score = 34.8 bits (81), Expect = 0.013
Identities = 21/104 (20%), Positives = 31/104 (29%), Gaps = 32/104 (30%)
Query: 29 LCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSAR 88
RT EKP + C++C F T+ +HI Q H
Sbjct: 3 SGSSGRTHSGEKPYE---CYICHARFTQSGTMKMHILQKHTE------------------ 41
Query: 89 VVNLAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETP 132
+F C +C R +L H++ H P
Sbjct: 42 -----------NVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGP 74
Score = 32.9 bits (76), Expect = 0.060
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 14 FTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGG 70
+ C IC A F + + H+ + + C C V A ++ L +H+++ H
Sbjct: 16 YECYICHARFTQSGTMKMHILQ-KHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY 71
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 62.5 bits (153), Expect = 1e-12
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 847 KTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
++++CE C + F +L+RH R HTNEKPY C C AF L H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 45.6 bits (109), Expect = 1e-06
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 689 CEVCGKTFGLKEYLRRHMRTHRVERKYKC-VCGDGFNFNVSLKVHM 733
CEVC + F +E+L+RH R+H E+ Y C +C F L H
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 39.8 bits (94), Expect = 2e-04
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 468 FVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRK 520
FVC+ C + F ++LKRH R H+N+ PY C CN AF + L H +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNE----KPYPCGLCNRAFTRRDLLIRHAQ 51
Score = 35.2 bits (82), Expect = 0.006
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 104 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHM-RTH 158
F CE C + F R + L+ H H E P C +C + F ++ L RH + H
Sbjct: 3 FVCEVCTRAFARQEHLKRH-YRSHTNEKPYP---CGLCNRAFTRRDLLIRHAQKIH 54
Score = 35.2 bits (82), Expect = 0.006
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 655 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHM-RTH 709
F CE C + F R + L+ H H E P C +C + F ++ L RH + H
Sbjct: 3 FVCEVCTRAFARQEHLKRH-YRSHTNEKPYP---CGLCNRAFTRRDLLIRHAQKIH 54
Score = 35.2 bits (82), Expect = 0.007
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 138 CEVCGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICG 177
CEVC + F +E+L+RH R+H E+ Y C +C
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPY-------PCGLCN 37
Score = 34.4 bits (80), Expect = 0.012
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 422 HLQQHQKAAHSG-VCYDCTFCGKGFTRKAELNIHIKAVH 459
HL++H ++ H+ Y C C + FTR+ L H + +H
Sbjct: 17 HLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 34.0 bits (79), Expect = 0.016
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 803 HLAIHKKHSHSGQY-HVCPHCGKKFTRKAELQLHIKGIH 840
HL H + SH+ + + C C + FTR+ L H + IH
Sbjct: 17 HLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 32.1 bits (74), Expect = 0.068
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 14 FTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGG 70
F C +C F + L H R+ NEKP C +C + F R L H +++H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYP---CGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 32.1 bits (74), Expect = 0.068
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 565 FTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGG 621
F C +C F + L H R+ NEKP C +C + F R L H +++H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYP---CGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 28.2 bits (64), Expect = 1.6
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 257 KKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTFTNKHLFRNHK 315
+ FVC+ C + F Q +L +H ++H P Y C CN FT + L H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHT--NEKP-------YPCGLCNRAFTRRDLLIRHA 50
Score = 27.5 bits (62), Expect = 2.8
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 227 YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHM-KTH 281
+ C+ C+ F R + H ++ H EK + C CN+ F + L +H K H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS----HTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 26.7 bits (60), Expect = 6.7
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
+ C C AF + L H ++
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRS 24
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 63.4 bits (154), Expect = 1e-12
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 817 HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEY-----CHKEFTFYNYLRRHMRVH 871
C + F+ EL H+ H+ + ++C + K F L H+RVH
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 872 TNEKPYKC 879
T EK
Sbjct: 86 TGEKSGPS 93
Score = 48.8 bits (116), Expect = 2e-07
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 9/74 (12%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY-----CNKDFPFMKYLKRHLRVH 490
C + F+ EL H+ H+ + VC + K F L H+RVH
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 491 SNDVQVPHPYKCTA 504
+ + +
Sbjct: 86 TGEK----SGPSSG 95
Score = 46.9 bits (111), Expect = 1e-06
Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 5/73 (6%)
Query: 650 HEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPE-----ERPRCEVCGKTFGLKEYLRR 704
+ C + F EL HV H+ + C GK+F K L
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 705 HMRTHRVERKYKC 717
H+R H E+
Sbjct: 81 HIRVHTGEKSGPS 93
Score = 43.4 bits (102), Expect = 2e-05
Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 99 HEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPE-----ERPRCEVCGKTFGLKEYLRR 153
+ C + F EL HV H+ + C GK+F K L
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 154 HMRTH 158
H+R H
Sbjct: 81 HIRVH 85
Score = 39.6 bits (92), Expect = 4e-04
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 226 TYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQY-----CNKEFPFQGYLNKHMKT 280
+ K C F+ + ++ H+ H+ + VC + K F + L H++
Sbjct: 25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV 84
Query: 281 H 281
H
Sbjct: 85 H 85
Score = 34.2 bits (78), Expect = 0.029
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 9/62 (14%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHM-RVHTNEKPYK--------CKDCGAAFNHNVSLK 893
+ + + + C + F+ + L H+ H C G +F L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 894 NH 895
NH
Sbjct: 80 NH 81
Score = 33.4 bits (76), Expect = 0.058
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 5/65 (7%)
Query: 462 HQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKC-----TACNAAFNTKSALN 516
+ + + C++ F M L H+ + + + C +F K L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 517 VHRKT 521
H +
Sbjct: 80 NHIRV 84
Score = 31.9 bits (72), Expect = 0.20
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 129 TETPEERPRCEVCGKTFGLKEYLRRHM-RTHRVERKYNGFE-SAALCFICGFYHKHKKMI 186
+ + + C +TF L H+ H + N C G K K +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 187 YRHIKEH 193
HI+ H
Sbjct: 79 VNHIRVH 85
Score = 31.9 bits (72), Expect = 0.23
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 253 HMLEKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGHV--TYTCKQCNLTFTNKHL 310
+ + C++ F L H+ H GP HV C + +F K+
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHV--TMEHVGGPEQNNHVCYWEECPREGKSFKAKYK 77
Query: 311 FRNH 314
NH
Sbjct: 78 LVNH 81
Score = 31.5 bits (71), Expect = 0.31
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 561 GEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNL------CFVCAKVFATRATLTLH 614
+ + + C F L H+ H PE++N C K F + L H
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
Query: 615 I 615
I
Sbjct: 82 I 82
Score = 30.3 bits (68), Expect = 0.66
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 10 REEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNL------CFVCAKVFATRATLTLH 63
+ + + C F L H+ H PE++N C K F + L H
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
Query: 64 I 64
I
Sbjct: 82 I 82
Score = 29.9 bits (67), Expect = 0.97
Identities = 22/78 (28%), Positives = 28/78 (35%), Gaps = 13/78 (16%)
Query: 402 HVAPKKREMKICDICCAEVLHLQQHQKAAHSG-------VCY--DCTFCGKGFTRKAELN 452
A R K CD + + L H H G VCY +C GK F K +L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 453 IHIKAVHLKHQLEQRFVC 470
HI+ H E+
Sbjct: 80 NHIR----VHTGEKSGPS 93
Score = 27.6 bits (61), Expect = 6.1
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 870 VHTNEKPYKCKDCGAAFNHNVSLKNH 895
+ + K C F+ L H
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTH 44
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 62.0 bits (151), Expect = 3e-12
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 817 HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
C CG +KA L H + H + + CE+C K F + + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 877 YKCKDC 882
++
Sbjct: 67 LAPQES 72
Score = 58.6 bits (142), Expect = 4e-11
Identities = 13/54 (24%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTN---EKPYKCKDCGAAFNHNVSLKNHK 896
CE C L H R H + C+ CG F S+ H+
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
Score = 56.3 bits (136), Expect = 3e-10
Identities = 17/69 (24%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Query: 655 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERP-RCEVCGKTFGLKEYLRRHMRTHRVER 713
CE C R+ L H + H ET CE CGK F + + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQR-KH-AETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 714 KYKCVCGDG 722
G
Sbjct: 66 LLAPQESSG 74
Score = 54.3 bits (131), Expect = 2e-09
Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 104 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERP-RCEVCGKTFGLKEYLRRHMRTHRVER 162
CE C R+ L H + H ET CE CGK F + + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQR-KH-AETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 163 KY 164
Sbjct: 66 LL 67
Score = 53.6 bits (129), Expect = 3e-09
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVH 490
C CG +KA LN H + H + RF C++C K F + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 50.1 bits (120), Expect = 5e-08
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 227 YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMKTH 281
C+ C + +N H + H + + +F C++C K F + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRK-HAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 45.9 bits (109), Expect = 2e-06
Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 6/60 (10%)
Query: 256 EKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTFTNKHLFRNHK 315
C+ C + LN H + H + + C+ C F H+
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQRKHA------ETVAALRFPCEFCGKRFEKPDSVAAHR 58
Score = 45.5 bits (108), Expect = 2e-06
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 468 FVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
C+ C L H R H+ V + C C F ++ HR
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAA-LRFPCEFCGKRFEKPDSVAAHRSK 60
Score = 38.2 bits (89), Expect = 8e-04
Identities = 18/112 (16%), Positives = 24/112 (21%), Gaps = 49/112 (43%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTH---RVERKYKC-VCGDGFNFNVSLKVHMAKCAFY 739
+CE+CG T K L H R H ++ C CG F S+ H
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR------ 58
Query: 740 LKSLEKEGESDHGGYETSSLCYHCGYYSKNRSTLKNHVRVEHGENQAKRKEK 791
H +E
Sbjct: 59 --------------------------------------SKSHPALLLAPQES 72
Score = 38.2 bits (89), Expect = 9e-04
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 871 HTNEKPYKCKDCGAAFNHNVSLKNH 895
+ +C+ CG SL H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWH 26
Score = 37.0 bits (86), Expect = 0.002
Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 12/73 (16%)
Query: 82 CEICS---ARVVNLAEHKLCHEPPR----FTCEYCVKPFRRTQELRNHVKAVHLTETPEE 134
CEIC + +L H+ H F CE+C K F + + H H P
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH----PAL 65
Query: 135 RPRC-EVCGKTFG 146
E G + G
Sbjct: 66 LLAPQESSGPSSG 78
Score = 36.2 bits (84), Expect = 0.004
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
Query: 413 CDIC---CAEVLHLQQHQKAAHSGVC----YDCTFCGKGFTRKAELNIHIKAVH 459
C+IC C + L HQ+ H+ + C FCGK F + + H H
Sbjct: 10 CEICGFTCRQKASLNWHQRK-HAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 34.7 bits (80), Expect = 0.013
Identities = 14/98 (14%), Positives = 21/98 (21%), Gaps = 34/98 (34%)
Query: 499 PYKCTACNAAFNTKSALNVHRKTCPNLELLNRDLLPNQTGTDDEKKLEQKEMAKKPTVTE 558
+C C K++LN H++ E
Sbjct: 7 GLQCEICGFTCRQKASLNWHQRKH----------------------------------AE 32
Query: 559 PAGEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSN 596
F C C F+K + H H
Sbjct: 33 TVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ 70
Score = 32.4 bits (74), Expect = 0.085
Identities = 13/64 (20%), Positives = 17/64 (26%)
Query: 561 GEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHG 620
G C IC + L H R C C K F ++ H + H
Sbjct: 4 GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP 63
Query: 621 GGQT 624
Sbjct: 64 ALLL 67
Score = 30.5 bits (69), Expect = 0.44
Identities = 12/60 (20%), Positives = 16/60 (26%)
Query: 14 FTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGGGQT 73
C IC + L H R C C K F ++ H + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Score = 30.1 bits (68), Expect = 0.53
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 760 CYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICS---AEVVHLAIHKKHSHSGQY 816
C CG+ + +++L H R H E A + C+ C + +A H+ SH
Sbjct: 10 CEICGFTCRQKASLNWHQRK-HAETVAALRFP--CEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 817 HVCPHCGKK 825
Sbjct: 67 LAPQESSGP 75
Score = 28.9 bits (65), Expect = 1.7
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 8/54 (14%)
Query: 204 CDICS---AEVIHLGTHQKVAHSGVT----YNCKFCSMKFTRVGQMNIHIKTVH 250
C+IC + L HQ+ H+ + C+FC +F + + H H
Sbjct: 10 CEICGFTCRQKASLNWHQRK-HAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 58.8 bits (143), Expect = 4e-11
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 819 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVHTNEKP 876
+CGK F + +L++H H + Y C + C K F+ + L+RH +VH
Sbjct: 6 FENCGKAFKKHNQLKVHQF----SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 877 YKCKDCGAAFNHNVSLKNH 895
K C H
Sbjct: 62 KKDDSCSFVGKTWTLYLKH 80
Score = 52.6 bits (127), Expect = 7e-09
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 849 YICEY--CHKEFTFYNYLRRHMRVHTNEKPYKCK--DCGAAFNHNVSLKNHK 896
Y+C + C K F +N L+ H HT + PY+C C F+ LK H+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE 53
Score = 45.3 bits (108), Expect = 3e-06
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 436 YDCTF--CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY--CNKDFPFMKYLKRHLRVHS 491
Y C F CGK F + +L +H H + + C + C+K F LKRH +VH+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQF----SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Query: 492 NDVQVPHPYKCTACNAAFNTKSALNVHRK 520
K +C+ T + H
Sbjct: 58 GY----PCKKDDSCSFVGKTWTLYLKHVA 82
Score = 43.0 bits (102), Expect = 2e-05
Identities = 23/96 (23%), Positives = 30/96 (31%), Gaps = 19/96 (19%)
Query: 689 CEVCGKTFGLKEYLRRHMRTHRVERKYKC---VCGDGFNFNVSLKVHMAKCAFYLKSLEK 745
E CGK F L+ H +H + Y+C C F+ LK H
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV---------- 55
Query: 746 EGESDHGGYETSSLCYHCGYYSKNRSTLKNHVRVEH 781
H GY C + K + HV H
Sbjct: 56 -----HAGYPCKK-DDSCSFVGKTWTLYLKHVAECH 85
Score = 38.8 bits (91), Expect = 5e-04
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 656 TCEYCVKPFRRTQELRNHVKAVHLTETPEERPRC--EVCGKTFGLKEYLRRHMRTHRVER 713
E C K F++ +L+ H + H + P E C E C K F L L+RH + H
Sbjct: 5 HFENCGKAFKKHNQLKVH-QFSHTQQLPYE---CPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 714 KYKC-VCGDGFNFNVSLKVHMAKC 736
K C H+A+C
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAEC 84
Score = 37.6 bits (88), Expect = 0.001
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 803 HLAIHKKHSHSGQY-HVCPH--CGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEF- 858
L +H+ SH+ Q + CPH C K+F+ + L+ H K H + C
Sbjct: 18 QLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEK----VHAGYPCKKDDSCSFVGK 72
Query: 859 TFYNYLRRHMRVH 871
T+ YL+ H
Sbjct: 73 TWTLYLKHVAECH 85
Score = 36.4 bits (85), Expect = 0.003
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 91 NLAEHKLCH--EPPRFTCEY--CVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFG 146
L H+ H + P + C + C K F L+ H K VH ++ C GKT+
Sbjct: 18 QLKVHQFSHTQQLP-YECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKDDSCSFVGKTWT 75
Query: 147 LKEYLRRHMRTH 158
YL+ H
Sbjct: 76 --LYLKHVAECH 85
Score = 36.4 bits (85), Expect = 0.003
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 642 NLAEHKLCH--EPPRFTCEY--CVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFG 697
L H+ H + P + C + C K F L+ H K VH ++ C GKT+
Sbjct: 18 QLKVHQFSHTQQLP-YECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKDDSCSFVGKTWT 75
Query: 698 LKEYLRRHMRTH 709
YL+ H
Sbjct: 76 --LYLKHVAECH 85
Score = 34.5 bits (80), Expect = 0.019
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 468 FVCQY--CNKDFPFMKYLKRHLRVHSNDVQVPHPYKCT--ACNAAFNTKSALNVHRKT 521
+VC + C K F LK H H+ PY+C C+ F+ S L H K
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQ----LPYECPHEGCDKRFSLPSRLKRHEKV 55
Score = 33.0 bits (76), Expect = 0.058
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 16/94 (17%)
Query: 227 YNCKF--CSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQY--CNKEFPFQGYLNKHMKTHN 282
Y C F C F + Q+ +H + H + + C + C+K F L +H K H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFS----HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Query: 283 HHGNGPGGGGHVTYTCKQCNLTFTN--KHLFRNH 314
G +C T+T KH+ H
Sbjct: 58 ------GYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 32.2 bits (74), Expect = 0.11
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 13/90 (14%)
Query: 105 TCEYCVKPFRRTQELRNHVKAVHLTETPEERPRC--EVCGKTFGLKEYLRRHMRTHRVER 162
E C K F++ +L+ H + H + P E C E C K F L L+RH + H
Sbjct: 5 HFENCGKAFKKHNQLKVH-QFSHTQQLPYE---CPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 163 KYNGFESAALCFICGFYHKHKKMIYRHIKE 192
C F K + +H+ E
Sbjct: 61 CKK-------DDSCSFVGKTWTLYLKHVAE 83
Score = 28.4 bits (64), Expect = 2.8
Identities = 19/86 (22%), Positives = 24/86 (27%), Gaps = 7/86 (8%)
Query: 138 CEVCGKTFGLKEYLRRHMRTHRVERKYN-GFESAALCFICGFYHKHKKMIYRHIKEHIEP 196
E CGK F L+ H +H + Y E F K RH K H
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLK------RHEKVHAGY 59
Query: 197 KKQEKKVCDICSAEVIHLGTHQKVAH 222
++ C H H
Sbjct: 60 PCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 26.8 bits (60), Expect = 9.4
Identities = 18/79 (22%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
Query: 50 CAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVVNLAEHKLCHE-PPRFTCEY 108
C K F L +H H Q Y E C+ + L H+ H P +
Sbjct: 9 CGKAFKKHNQLKVHQFS-HTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 66
Query: 109 CVKPFRRTQELRNHVKAVH 127
C + HV H
Sbjct: 67 CSFVGKTWTLYLKHVAECH 85
Score = 26.8 bits (60), Expect = 9.4
Identities = 18/79 (22%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
Query: 601 CAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVVNLAEHKLCHE-PPRFTCEY 659
C K F L +H H Q Y E C+ + L H+ H P +
Sbjct: 9 CGKAFKKHNQLKVHQFS-HTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 66
Query: 660 CVKPFRRTQELRNHVKAVH 678
C + HV H
Sbjct: 67 CSFVGKTWTLYLKHVAECH 85
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 57.2 bits (139), Expect = 7e-11
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHM-RVHTNEKPYKCKDCGAAFN 887
+ K YIC+ C K F+ ++L H+ +VHT+E+P+KC+ + +
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 42.2 bits (100), Expect = 2e-05
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
+ KPY C+ CG F+ L H
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGH 31
Score = 40.6 bits (96), Expect = 6e-05
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 684 EERP-RCEVCGKTFGLKEYLRRHM-RTHRVERKYKC-VCGDGFN 724
+P C+ CGK F ++L H+ + H ER +KC V G +
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 39.9 bits (94), Expect = 1e-04
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 104 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTF 145
+ C+ C K F R L H+K VH +E P + C+V
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHK---CQVWVSGP 51
Score = 39.9 bits (94), Expect = 1e-04
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 655 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTF 696
+ C+ C K F R L H+K VH +E P + C+V
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHK---CQVWVSGP 51
Score = 38.7 bits (91), Expect = 3e-04
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDF 477
Y C CGKGF+R LN HIK VH E+ CQ
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTS---ERPHKCQVWVSGP 51
Score = 35.2 bits (82), Expect = 0.004
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 462 HQLEQRFVCQYCNKDFPFMKYLKRHL-RVHSNDVQVPHPYKCTACNAAFNT 511
+ + ++CQ C K F +L H+ +VH+++ P+KC + ++
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSE----RPHKCQVWVSGPSS 53
Score = 30.6 bits (70), Expect = 0.22
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 227 YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEF 268
Y C+ C F+R +N HIK VH E+ CQ
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTS---ERPHKCQVWVSGP 51
Score = 30.2 bits (69), Expect = 0.33
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 253 HMLEKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTFTN 307
+ K ++CQ C K F +LN H+K H P + C+ ++
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIK-QVHTSERP-------HKCQVWVSGPSS 53
Score = 29.9 bits (68), Expect = 0.44
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 9/47 (19%)
Query: 133 EERP-RCEVCGKTFGLKEYLRRHM-RTHRVERKYNGFESAALCFICG 177
+P C+ CGK F ++L H+ + H ER + C +
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHK-------CQVWV 48
Score = 29.5 bits (67), Expect = 0.54
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 422 HLQQHQKAAHSGVC-YDCTFCGKGFT 446
HL H K H+ + C G +
Sbjct: 27 HLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 28.7 bits (65), Expect = 1.0
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 560 AGEEAFTCRICQAVFDKYVRLCGHLRTVHN-EKPEKSNLCFVCAKVFAT 607
+ + + C+ C F + L GH++ VH E+P K C V ++
Sbjct: 8 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHK---CQVWVSGPSS 53
Score = 28.7 bits (65), Expect = 1.0
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 499 PYKCTACNAAFNTKSALNVHRK 520
PY C +C F+ LN H K
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIK 33
Score = 27.5 bits (62), Expect = 2.5
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 705 HMRTHRVERKYKC-VCGDGFNFNVSLKVHM 733
+ V + Y C CG GF+ L H+
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHI 32
Score = 27.5 bits (62), Expect = 3.0
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 10 REEAFTCRICQAVFDKYVRLCGHLRTVHN-EKPEKSNLCFVCAKVFAT 56
+ + C+ C F + L GH++ VH E+P K C V ++
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHK---CQVWVSGPSS 53
Score = 26.8 bits (60), Expect = 5.7
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 803 HLAIHKKHSHSGQY-HVCPHCGKKFT 827
HL H K H+ + H C +
Sbjct: 27 HLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 26.4 bits (59), Expect = 6.9
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 39 EKPEKSNLCFVCAKVFATRATLTLHIKQMHGG 70
KP C C K F+ L HIKQ+H
Sbjct: 10 GKPYI---CQSCGKGFSRPDHLNGHIKQVHTS 38
Score = 26.4 bits (59), Expect = 6.9
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 590 EKPEKSNLCFVCAKVFATRATLTLHIKQMHGG 621
KP C C K F+ L HIKQ+H
Sbjct: 10 GKPYI---CQSCGKGFSRPDHLNGHIKQVHTS 38
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 57.2 bits (139), Expect = 1e-10
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRV--HTNEKPYKCKDCGAAFNHNVSLKNHK 896
E TY C+ C + +T + RH N K Y C C F ++ H
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 53.3 bits (129), Expect = 3e-09
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 817 HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHT 872
+ C C + +T + H H + K Y C +C KEFT + + H+++
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSH--KRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 49.1 bits (118), Expect = 9e-08
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 104 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERP-RCEVCGKTFGLKEYLRRHMRTHR 159
+ C+ C + + H H + C C K F K+ + H++
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRN---VKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 49.1 bits (118), Expect = 9e-08
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 655 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERP-RCEVCGKTFGLKEYLRRHMRTHR 710
+ C+ C + + H H + C C K F K+ + H++
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRN---VKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 48.3 bits (116), Expect = 1e-07
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 227 YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMKTHN 282
Y CK CS +T + H T H K + C +C KEF + + H+K +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSH--KRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 46.4 bits (111), Expect = 6e-07
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVH 490
Y C C + +T + H H + + + C +C K+F + H+++
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSH--KRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 42.5 bits (101), Expect = 2e-05
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 869 RVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
E Y+CK C + H + H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHY 30
Score = 40.6 bits (96), Expect = 9e-05
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 10/61 (16%)
Query: 465 EQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPH----PYKCTACNAAFNTKSALNVHRK 520
E + C+ C++ + + RH Y C C F K + H K
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTSH------KRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Query: 521 T 521
Sbjct: 62 I 62
Score = 39.8 bits (94), Expect = 2e-04
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 7/60 (11%)
Query: 256 EKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTFTNKHLFRNHK 315
E + C+ C++ + +H T + Y C C FT K H
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV-------YPCPFCFKEFTRKDNMTAHV 60
Score = 34.5 bits (80), Expect = 0.012
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 422 HLQQHQK-AAHSGVC-YDCTFCGKGFTRKAELNIHIKAVH 459
+ +H + V Y C FC K FTRK + H+K +H
Sbjct: 25 NFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 32.9 bits (76), Expect = 0.043
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 561 GEEAFTCRICQAVFDKYVRLCGHLRTVH--NEKPEKSNLCFVCAKVFATRATLTLHIKQM 618
GE + C++C V+ C H T H N K C C K F + +T H+K +
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYP---CPFCFKEFTRKDNMTAHVKII 63
Query: 619 HG 620
H
Sbjct: 64 HK 65
Score = 31.4 bits (72), Expect = 0.16
Identities = 19/81 (23%), Positives = 24/81 (29%), Gaps = 29/81 (35%)
Query: 760 CYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQYHVC 819
C C + S H H N K + C
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRN-----VK------------------------VYPC 43
Query: 820 PHCGKKFTRKAELQLHIKGIH 840
P C K+FTRK + H+K IH
Sbjct: 44 PFCFKEFTRKDNMTAHVKIIH 64
Score = 30.6 bits (70), Expect = 0.25
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 14 FTCRICQAVFDKYVRLCGHLRTVH--NEKPEKSNLCFVCAKVFATRATLTLHIKQMHG 69
+ C++C V+ C H T H N K C C K F + +T H+K +H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYP---CPFCFKEFTRKDNMTAHVKIIHK 65
Score = 26.7 bits (60), Expect = 7.4
Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 15/77 (19%)
Query: 707 RTHRVERKYKC-VCGDGFNFNVSLKVHMAKCAFYLKSLEKEGESDHGGYETSSLCYHCGY 765
T E Y+C VC + + H + K + C C
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHY-------VTSHKRNVKVYP-------CPFCFK 48
Query: 766 YSKNRSTLKNHVRVEHG 782
+ + HV++ H
Sbjct: 49 EFTRKDNMTAHVKIIHK 65
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 56.7 bits (136), Expect = 6e-10
Identities = 16/94 (17%), Positives = 25/94 (26%), Gaps = 1/94 (1%)
Query: 803 HLAIHKKHSHSGQYHVCPHCGKKFTRKAELQLHIK-GIHLKHQLEKTYICEYCHKEFTFY 861
++ C C + EL +H+ H + +T
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 862 NYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
L +K KC CG +F L H
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 54.8 bits (131), Expect = 3e-09
Identities = 22/108 (20%), Positives = 32/108 (29%), Gaps = 3/108 (2%)
Query: 642 NLAEHKLCHE-PPRFTCEYCVKPFRRTQELRNHVKAV-HLTETPEERPRCEVCGKTFGLK 699
+ + +F C+ C + EL H+ H + E + K
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 700 EYLRRHMRTHRVERKYKC-VCGDGFNFNVSLKVHMAKCAFYLKSLEKE 746
L ++ KC CG F L VHM K Y K
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPS 113
Score = 50.5 bits (120), Expect = 9e-08
Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 5/98 (5%)
Query: 422 HLQQHQKAAHSGVCYDCTFCGKGFTRKAELNIHIKAV-HLKHQLEQRFVCQYCNKDFPFM 480
+ + + C C + EL +H+ H + + P
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 481 KYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVH 518
+ L KC C +F + L+VH
Sbjct: 66 RSLLEMEGKE----DAQKVLKCMYCGHSFESLQDLSVH 99
Score = 44.8 bits (105), Expect = 9e-06
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 1/74 (1%)
Query: 864 LRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNSSCPKRDMTATP-PAPRRTESNTRHS 922
+ + + T ++CKDC AA++ V L H N + RD + S R
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKR 66
Query: 923 HLSSNSTSPSHNGP 936
L
Sbjct: 67 SLLEMEGKEDAQKV 80
Score = 44.8 bits (105), Expect = 9e-06
Identities = 13/103 (12%), Positives = 29/103 (28%), Gaps = 10/103 (9%)
Query: 213 HLGTHQKVAHSGVTYNCKFCSMKFTRVGQMNIHIK-TVHLKHMLEKKFVCQYCNKEFPFQ 271
+ + + CK CS + + ++ +H+ T H + + P +
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 272 GYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTFTNKHLFRNH 314
L + + C C +F + H
Sbjct: 66 RSLLEMEGKEDAQKV---------LKCMYCGHSFESLQDLSVH 99
Score = 39.0 bits (90), Expect = 0.001
Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 3/94 (3%)
Query: 42 EKSNLCFVCAKVFATRATLTLHIKQMHGGGQTDYVREKE-VCEICSARVVNLAEHKLCHE 100
C C+ + T LT+H+ + ++ + R +L E + +
Sbjct: 17 ASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED 76
Query: 101 PPR-FTCEYCVKPFRRTQELRNH-VKAVHLTETP 132
+ C YC F Q+L H +K H +
Sbjct: 77 AQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVS 110
Score = 39.0 bits (90), Expect = 0.001
Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 3/94 (3%)
Query: 593 EKSNLCFVCAKVFATRATLTLHIKQMHGGGQTDYVREKE-VCEICSARVVNLAEHKLCHE 651
C C+ + T LT+H+ + ++ + R +L E + +
Sbjct: 17 ASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED 76
Query: 652 PPR-FTCEYCVKPFRRTQELRNH-VKAVHLTETP 683
+ C YC F Q+L H +K H +
Sbjct: 77 AQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVS 110
Score = 38.6 bits (89), Expect = 0.002
Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 12/115 (10%)
Query: 770 RSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQY--HVCPHCGKKFT 827
S+ K + + G ++ + C CSA L H + +
Sbjct: 4 GSSGKLYGSIFTGASKFR------CKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNP 57
Query: 828 RKAELQLHIKGI--HLKHQLEKTYICEYCHKEFTFYNYLRRHM--RVHTNEKPYK 878
++ + K +K C YC F L HM H +
Sbjct: 58 KRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
Score = 35.9 bits (82), Expect = 0.012
Identities = 18/111 (16%), Positives = 40/111 (36%), Gaps = 9/111 (8%)
Query: 483 LKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKTCPNLELLNRDLLPNQTGTDDE 542
K + + + ++C C+AA++T L VH + + +
Sbjct: 7 GKLYGSIFTGA----SKFRCKDCSAAYDTLVELTVHMNE--TGHYRDDNHETDNNNPKRW 60
Query: 543 KKLEQKEMAKKPTVTEPAGEEAFTCRICQAVFDKYVRLCGHL-RTVHNEKP 592
K ++ + + + ++ C C F+ L H+ +T H +K
Sbjct: 61 SKPRKRSLLEME--GKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKV 109
Score = 35.9 bits (82), Expect = 0.013
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 5/83 (6%)
Query: 82 CEICSA---RVVNLAEHKLCHEPPRFTCEYCVK--PFRRTQELRNHVKAVHLTETPEERP 136
C+ CSA +V L H R P R ++ + + + E ++
Sbjct: 22 CKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVL 81
Query: 137 RCEVCGKTFGLKEYLRRHMRTHR 159
+C CG +F + L HM +
Sbjct: 82 KCMYCGHSFESLQDLSVHMIKTK 104
Score = 35.9 bits (82), Expect = 0.013
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 5/83 (6%)
Query: 633 CEICSA---RVVNLAEHKLCHEPPRFTCEYCVK--PFRRTQELRNHVKAVHLTETPEERP 687
C+ CSA +V L H R P R ++ + + + E ++
Sbjct: 22 CKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVL 81
Query: 688 RCEVCGKTFGLKEYLRRHMRTHR 710
+C CG +F + L HM +
Sbjct: 82 KCMYCGHSFESLQDLSVHMIKTK 104
Score = 35.9 bits (82), Expect = 0.013
Identities = 18/121 (14%), Positives = 30/121 (24%), Gaps = 30/121 (24%)
Query: 253 HMLEKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTFTNKHLFR 312
KF C+ C+ + L HM GH + + +
Sbjct: 14 FTGASKFRCKDCSAAYDTLVELTVHMNET----------GHYRDDNHETDNNNPKRWSKP 63
Query: 313 NHKLFEADEFFDGEVPLYESSSDKEDVEEEEEMEEEVWQCRHCPLKHRSHDLLLRHYTKE 372
+ E +E ++V +C +C S L H K
Sbjct: 64 RKRSLLE--------------------MEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKT 103
Query: 373 H 373
Sbjct: 104 K 104
Score = 34.4 bits (78), Expect = 0.036
Identities = 20/149 (13%), Positives = 39/149 (26%), Gaps = 45/149 (30%)
Query: 702 LRRHMRTHRVERKYKC-VCGDGFNFNVSLKVHMAKCAFYLKSLEKEGESDHGGYETSSLC 760
+ + K++C C ++ V L VHM + Y +
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDN-----------N 55
Query: 761 YHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQYHVCP 820
+ + +L E + + C
Sbjct: 56 NPKRWSKPRKRSLLEMEGKEDAQ-------------------------------KVLKCM 84
Query: 821 HCGKKFTRKAELQLHIKGIHLKHQLEKTY 849
+CG F +L +H+ I KH + +
Sbjct: 85 YCGHSFESLQDLSVHM--IKTKHYQKVSG 111
Score = 28.2 bits (62), Expect = 5.2
Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 6/91 (6%)
Query: 382 CYYCGYFNGHKKMIYLHIKD-----HVAPKKREMKICDICCAEVLHLQQHQKAAHSGVCY 436
C C + +H+ + + L + + +
Sbjct: 22 CKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVL 81
Query: 437 DCTFCGKGFTRKAELNIH-IKAVHLKHQLEQ 466
C +CG F +L++H IK H +
Sbjct: 82 KCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 6e-09
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKPY C++CG AF H+ L+ H+
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQ 32
Score = 47.1 bits (113), Expect = 2e-07
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y CE C K F + L+ H R+HT EKP
Sbjct: 7 GTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 0.001
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P CE CGK F L+ H R H E+ G
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSSG 46
Score = 31.0 bits (71), Expect = 0.14
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PY C C AF S L H++
Sbjct: 2 SSGSSGTGE----KPYNCEECGKAFIHDSQLQEHQRI 34
Score = 29.8 bits (68), Expect = 0.39
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P CE CGK F L+ H R H E+
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKPS 41
Score = 29.0 bits (66), Expect = 0.57
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ Y C CG F + L+ H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 1e-08
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T KPY C +CG AF+ SL H+
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQ 32
Score = 46.4 bits (111), Expect = 4e-07
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
K Y+C C K F+ Y+ L H +HT EKP
Sbjct: 7 GTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.003
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
+P C CGK F + L H H E+ G
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG 46
Score = 30.6 bits (70), Expect = 0.20
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ PY C C AF+ S+L H+
Sbjct: 2 SSGSSGTGV----KPYMCNECGKAFSVYSSLTTHQVI 34
Score = 29.8 bits (68), Expect = 0.39
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
+P C CGK F + L H H E+
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKPS 41
Score = 29.0 bits (66), Expect = 0.62
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+ + Y C CG F+ SL H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 50.8 bits (122), Expect = 2e-08
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 846 EKTYIC--EYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
+ Y C E C + F+ + L RH+R+HT +KP++C+ C F+ + L H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Score = 46.1 bits (110), Expect = 1e-06
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 808 KKHSHSGQY-HVCPH--CGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYL 864
+ + CP C ++F+R EL HI+ H +K + C C + F+ ++L
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIR----IHTGQKPFQCRICMRNFSRSDHL 65
Query: 865 RRHMRVHT 872
H+R HT
Sbjct: 66 TTHIRTHT 73
Score = 44.6 bits (106), Expect = 3e-06
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 213 HLGTHQKVAHSGVTYNC--KFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPF 270
++ + Y C + C +F+R ++ HI+ H +K F C+ C + F
Sbjct: 12 YVVPKMR------PYACPVESCDRRFSRSDELTRHIRI----HTGQKPFQCRICMRNFSR 61
Query: 271 QGYLNKHMKTH 281
+L H++TH
Sbjct: 62 SDHLTTHIRTH 72
Score = 44.6 bits (106), Expect = 3e-06
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 91 NLAEHKLCHEPPRFTC--EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLK 148
NL + + P + C E C + F R+ EL H++ T ++ +C +C + F
Sbjct: 8 NLLNYVVPKMRP-YACPVESCDRRFSRSDELTRHIR----IHTGQKPFQCRICMRNFSRS 62
Query: 149 EYLRRHMRTH 158
++L H+RTH
Sbjct: 63 DHLTTHIRTH 72
Score = 44.6 bits (106), Expect = 3e-06
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 642 NLAEHKLCHEPPRFTC--EYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLK 699
NL + + P + C E C + F R+ EL H++ T ++ +C +C + F
Sbjct: 8 NLLNYVVPKMRP-YACPVESCDRRFSRSDELTRHIR----IHTGQKPFQCRICMRNFSRS 62
Query: 700 EYLRRHMRTH 709
++L H+RTH
Sbjct: 63 DHLTTHIRTH 72
Score = 40.0 bits (94), Expect = 2e-04
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 436 YDCT--FCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHS 491
Y C C + F+R EL HI+ H ++ F C+ C ++F +L H+R H+
Sbjct: 20 YACPVESCDRRFSRSDELTRHIR----IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 38.4 bits (90), Expect = 5e-04
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 685 ERP-RC--EVCGKTFGLKEYLRRHMRTHRVERKYKC-VCGDGFNFNVSLKVHM 733
RP C E C + F + L RH+R H ++ ++C +C F+ + L H+
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Score = 35.4 bits (82), Expect = 0.008
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 465 EQRFVCQY--CNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + C C++ F L RH+R+H+ P++C C F+ L H +T
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQ----KPFQCRICMRNFSRSDHLTTHIRT 71
Score = 30.0 bits (68), Expect = 0.51
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 134 ERP-RC--EVCGKTFGLKEYLRRHMRTHRVERKY 164
RP C E C + F + L RH+R H ++ +
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPF 50
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-08
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKPYKC +CG F HN L H+
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQ 32
Score = 46.7 bits (112), Expect = 4e-07
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C C K F +YL RH R+HT EKP
Sbjct: 7 GTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 0.002
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +C CGK F YL RH R H E+ G
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG 46
Score = 30.9 bits (71), Expect = 0.15
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +C CGK F YL RH R H E+
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKPS 41
Score = 30.2 bits (69), Expect = 0.23
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PYKC C F S L+ H++
Sbjct: 2 SSGSSGTGE----KPYKCNECGKVFRHNSYLSRHQRI 34
Score = 28.6 bits (65), Expect = 0.86
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+ E+ YKC CG F N L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 49.5 bits (119), Expect = 3e-08
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EKT+ C C F+ + LR H VH EKP
Sbjct: 7 GMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 46.0 bits (110), Expect = 6e-07
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
EK +KC++C F+ SL+ H+
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQ 32
Score = 37.9 bits (89), Expect = 4e-04
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+ +C C F LR H H E+ G
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG 46
Score = 32.1 bits (74), Expect = 0.043
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+ +C C F LR H H E+
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKPS 41
Score = 30.2 bits (69), Expect = 0.21
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
+KC C+ F+ S+L +H+
Sbjct: 12 TWKCRECDMCFSQASSLRLHQNV 34
Score = 27.5 bits (62), Expect = 1.9
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 705 HMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+ E+ +KC C F+ SL++H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH 31
Score = 27.5 bits (62), Expect = 2.5
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
+ C C F++ + L +H
Sbjct: 13 WKCRECDMCFSQASSLRLH 31
Score = 27.1 bits (61), Expect = 2.9
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 253 HMLEKKFVCQYCNKEFPFQGYLNKHMKTH 281
M EK + C+ C+ F L H H
Sbjct: 7 GMGEKTWKCRECDMCFSQASSLRLHQNVH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 3e-08
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKPY+C C AF+H+ SL H+
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQ 32
Score = 44.0 bits (105), Expect = 3e-06
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 838 GIHLK-HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
G EK Y C+ C K F+ + L +H RVH+ EKP
Sbjct: 1 GSSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.003
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P C+VC K F L +H R H E+ G
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSSG 46
Score = 29.4 bits (67), Expect = 0.49
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P C+VC K F L +H R H E+
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKPS 41
Score = 29.4 bits (67), Expect = 0.52
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 486 HLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PY+C C AF+ ++L H++
Sbjct: 3 SGSSGTGE----KPYECDVCRKAFSHHASLTQHQRV 34
Score = 25.9 bits (58), Expect = 7.0
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 705 HMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+ E+ Y+C VC F+ + SL H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQH 31
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 3e-08
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
+ EKP+KC++CG F N L +H+
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQ 32
Score = 45.2 bits (108), Expect = 1e-06
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK + CE C K FT + L H RVHT EKP
Sbjct: 7 GSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.004
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +CE CGK F L H R H E+ G
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG 46
Score = 30.2 bits (69), Expect = 0.25
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
S + P+KC C F S L+ H++
Sbjct: 2 SSGSSGSGE----KPFKCEECGKRFTQNSQLHSHQRV 34
Score = 29.4 bits (67), Expect = 0.42
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+ E+ +KC CG F N L H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
Score = 29.4 bits (67), Expect = 0.42
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +CE CGK F L H R H E+
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPS 41
Score = 26.3 bits (59), Expect = 6.4
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
+ C CGK FT+ ++L+ H
Sbjct: 13 FKCEECGKRFTQNSQLHSH 31
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 4e-08
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKPY+C CG AF+H SL H+
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQ 32
Score = 43.7 bits (104), Expect = 5e-06
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C C K F+ L H R+H+ +KP
Sbjct: 7 GTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 35.9 bits (84), Expect = 0.002
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P C VCGK F ++ L H R H ++ G
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG 46
Score = 30.2 bits (69), Expect = 0.25
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PY+C+ C AF+ + +L+VH++
Sbjct: 2 SSGSSGTGE----KPYECSVCGKAFSHRQSLSVHQRI 34
Score = 29.4 bits (67), Expect = 0.40
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P C VCGK F ++ L H R H ++
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKPS 41
Score = 27.1 bits (61), Expect = 2.9
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+ E+ Y+C VCG F+ SL VH
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
Score = 26.7 bits (60), Expect = 4.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y+C+ CGK F+ + L++H
Sbjct: 13 YECSVCGKAFSHRQSLSVH 31
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 49.1 bits (118), Expect = 4e-08
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKPY CK+CG +F L H+
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQ 32
Score = 47.6 bits (114), Expect = 2e-07
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKD 881
EK Y C+ C K F + + L +H RVH+ EKP
Sbjct: 7 GTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 35.2 bits (82), Expect = 0.004
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKC 717
E+P C+ CGK+F L +H R H E+
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.21
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P C+ CGK+F L +H R H E+
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKPS 41
Score = 29.8 bits (68), Expect = 0.37
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PY C C +F S L H++
Sbjct: 2 SSGSSGTGE----KPYNCKECGKSFRWASCLLKHQRV 34
Score = 28.3 bits (64), Expect = 1.3
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ Y C CG F + L H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKH 31
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 4e-08
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
+ EKPYKC +CG F N L NH
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHW 32
Score = 44.8 bits (107), Expect = 2e-06
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C C K FT ++L H R+HT EKP
Sbjct: 7 GSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.007
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +C CGK F +L H R H E+ G
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG 46
Score = 29.8 bits (68), Expect = 0.33
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
S + PYKC C F S L H +
Sbjct: 2 SSGSSGSGE----KPYKCNECGKVFTQNSHLTNHWRI 34
Score = 29.0 bits (66), Expect = 0.57
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +C CGK F +L H R H E+
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKPS 41
Score = 27.5 bits (62), Expect = 2.1
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ YKC CG F N L H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 5e-08
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKPYKC +CG AF+ L H+
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQ 32
Score = 44.8 bits (107), Expect = 2e-06
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C C K F+ + L RH R+HT EKP
Sbjct: 7 GTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 0.002
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +C CGK F L RH R H E+ G
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG 46
Score = 29.8 bits (68), Expect = 0.38
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PYKC C AF+ S L H++
Sbjct: 2 SSGSSGTGE----KPYKCNECGKAFSQTSKLARHQRI 34
Score = 29.8 bits (68), Expect = 0.39
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +C CGK F L RH R H E+
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKPS 41
Score = 27.5 bits (62), Expect = 2.3
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ YKC CG F+ L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARH 31
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 5e-08
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKPYKC +CG AF + +L H+
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQ 32
Score = 45.6 bits (109), Expect = 9e-07
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C C K F ++ L H +HT EKP
Sbjct: 7 GTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.005
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +C CGK F L H H E+ G
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSSG 46
Score = 29.0 bits (66), Expect = 0.57
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
PYKC C AF S L H+
Sbjct: 12 PYKCNECGKAFRAHSNLTTHQVI 34
Score = 28.6 bits (65), Expect = 0.80
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +C CGK F L H H E+
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKPS 41
Score = 27.1 bits (61), Expect = 2.8
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 705 HMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ YKC CG F + +L H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTH 31
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 5e-08
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKPYKC C +F + SL H+
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQ 32
Score = 46.4 bits (111), Expect = 4e-07
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C+ CHK F + + L H R+HT EKP
Sbjct: 7 GTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 0.002
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +C+VC K+F L H R H E+ G
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG 46
Score = 30.6 bits (70), Expect = 0.19
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +C+VC K+F L H R H E+
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPS 41
Score = 29.4 bits (67), Expect = 0.40
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 486 HLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PYKC C+ +F S+L VH++
Sbjct: 3 SGSSGTGE----KPYKCDVCHKSFRYGSSLTVHQRI 34
Score = 29.0 bits (66), Expect = 0.70
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 705 HMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+ E+ YKC VC F + SL VH
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 5e-08
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
+ EKPYKC +CG AF+ + L H+
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHR 32
Score = 44.8 bits (107), Expect = 2e-06
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C C K F + +L H R+HT +P
Sbjct: 7 GSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 34.0 bits (79), Expect = 0.010
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKC 717
E+P +C CGK F +L H R H R
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 29.8 bits (68), Expect = 0.38
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
S + PYKC+ C AF+ + LN HR+
Sbjct: 2 SSGSSGSGE----KPYKCSECGKAFHRHTHLNEHRRI 34
Score = 29.0 bits (66), Expect = 0.73
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +C CGK F +L H R H R
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRPS 41
Score = 27.1 bits (61), Expect = 3.5
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ YKC CG F+ + L H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEH 31
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 48.7 bits (117), Expect = 6e-08
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EK YKC +CG F+ N L H+
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQ 32
Score = 44.0 bits (105), Expect = 3e-06
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C C K F+ + L +H ++HT EKP
Sbjct: 7 GTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.005
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+ +C CGK F L +H + H E+ G
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG 46
Score = 29.0 bits (66), Expect = 0.60
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRK 520
+ + YKC C F+ S L+ H+K
Sbjct: 2 SSGSSGTGE----KRYKCNECGKVFSRNSQLSQHQK 33
Score = 29.0 bits (66), Expect = 0.62
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+ +C CGK F L +H + H E+
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKPS 41
Score = 27.9 bits (63), Expect = 1.7
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+ E++YKC CG F+ N L H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.6 bits (117), Expect = 6e-08
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKPYKC +CG F N L H+
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQ 32
Score = 45.9 bits (110), Expect = 7e-07
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C C K F ++L RH +HT EKP
Sbjct: 7 GTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 35.5 bits (83), Expect = 0.003
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +C CGK F +L RH H E+ G
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG 46
Score = 29.4 bits (67), Expect = 0.52
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PYKC C F S L H+
Sbjct: 2 SSGSSGTGE----KPYKCHECGKVFRRNSHLARHQLI 34
Score = 29.4 bits (67), Expect = 0.54
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +C CGK F +L RH H E+
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKPS 41
Score = 27.8 bits (63), Expect = 1.7
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+ E+ YKC CG F N L H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARH 31
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 6e-08
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
T EKP++C++CG +F+ N L H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVH 31
Score = 44.4 bits (106), Expect = 2e-06
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK + C C K F+F + L H R+HT E P
Sbjct: 7 GTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 35.2 bits (82), Expect = 0.004
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P C CGK+F L H R H E G
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG 46
Score = 29.4 bits (67), Expect = 0.40
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ ++C CG F+FN L VH
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVH 31
Score = 29.4 bits (67), Expect = 0.50
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P C CGK+F L H R H E
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENPS 41
Score = 29.0 bits (66), Expect = 0.62
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + P++C C +F+ S L VH++
Sbjct: 2 SSGSSGTGE----KPHECRECGKSFSFNSQLIVHQRI 34
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 48.7 bits (117), Expect = 6e-08
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
T EKP++C +CG +F+ + L H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATH 31
Score = 44.8 bits (107), Expect = 1e-06
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK + C C K F+ + L H R+HT EKP
Sbjct: 7 GTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 0.001
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P C CGK+F + L H R H E+ G
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSSG 46
Score = 30.2 bits (69), Expect = 0.24
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P C CGK+F + L H R H E+
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKPS 41
Score = 29.8 bits (68), Expect = 0.33
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + P++C C +F+ S L H++
Sbjct: 2 SSGSSGTGE----KPFECAECGKSFSISSQLATHQRI 34
Score = 28.6 bits (65), Expect = 0.84
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ ++C CG F+ + L H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATH 31
Score = 25.9 bits (58), Expect = 7.5
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
++C CGK F+ ++L H
Sbjct: 13 FECAECGKSFSISSQLATH 31
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 7e-08
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKP+ C DCG AF+ ++ L H+
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHR 32
Score = 43.7 bits (104), Expect = 4e-06
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK + C C K F+ + L +H R+HT EKP
Sbjct: 7 GTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.003
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P C CGK F L +H R H E+ G
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG 46
Score = 29.8 bits (68), Expect = 0.30
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 486 HLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + P+ C C AF+ LN HR+
Sbjct: 3 SGSSGTGE----KPFDCIDCGKAFSDHIGLNQHRRI 34
Score = 29.4 bits (67), Expect = 0.54
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P C CGK F L +H R H E+
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPS 41
Score = 26.3 bits (59), Expect = 5.5
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 425 QHQKAAHSGVC-YDCTFCGKGFTRKAELNIH 454
+ +G +DC CGK F+ LN H
Sbjct: 2 SSGSS-GTGEKPFDCIDCGKAFSDHIGLNQH 31
Score = 26.3 bits (59), Expect = 6.8
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 705 HMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ + C+ CG F+ ++ L H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 7e-08
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKPYKC+ CG AF + L H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHH 32
Score = 44.8 bits (107), Expect = 2e-06
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C+ C K F ++L +H VH+ E+P
Sbjct: 7 GTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 36.7 bits (86), Expect = 0.001
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +C+VCGK F + +L +H H ER G
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSSG 46
Score = 30.6 bits (70), Expect = 0.19
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +C+VCGK F + +L +H H ER
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERPS 41
Score = 28.6 bits (65), Expect = 0.77
Identities = 10/36 (27%), Positives = 12/36 (33%), Gaps = 4/36 (11%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRK 520
+ + PYKC C AF S L H
Sbjct: 2 SSGSSGTGE----KPYKCQVCGKAFRVSSHLVQHHS 33
Score = 26.7 bits (60), Expect = 4.3
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+ E+ YKC VCG F + L H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQH 31
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 49.3 bits (118), Expect = 8e-08
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 835 HIKGIHLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVHTNEKPYKC--KDCGAAFNHNV 890
G + +++IC + C K + ++L+ H R HT EKP+ C K C F +
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD 63
Query: 891 SLKNHK 896
L H+
Sbjct: 64 ELSRHR 69
Score = 41.6 bits (98), Expect = 4e-05
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 803 HLAIHKKHSHSGQYHVCPH--CGKKFTRKAELQLHIKGIHLKHQLEKTYICEY--CHKEF 858
+ + S + H+C H CGK + + + L+ H + H EK + C + C + F
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTR----THTGEKPFSCSWKGCERRF 59
Query: 859 TFYNYLRRHMRVH 871
+ L RH R H
Sbjct: 60 ARSDELSRHRRTH 72
Score = 37.0 bits (86), Expect = 0.002
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 678 HLTETPEERP-RCEV--CGKTFGLKEYLRRHMRTHRVERKYKCV---CGDGFNFNVSLKV 731
++ R C CGKT+ +L+ H RTH E+ + C C F + L
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSR 67
Query: 732 HM 733
H
Sbjct: 68 HR 69
Score = 36.2 bits (84), Expect = 0.004
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 422 HLQQHQKAAHSGVCYDCTF--CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQY--CNKDF 477
Q + + C+ CGK + + + L H + H E+ F C + C + F
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTR----THTGEKPFSCSWKGCERRF 59
Query: 478 PFMKYLKRHLRVH 490
L RH R H
Sbjct: 60 ARSDELSRHRRTH 72
Score = 34.7 bits (80), Expect = 0.012
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 454 HIKAVHLKHQLEQRFVCQY--CNKDFPFMKYLKRHLRVHSNDVQVPHPYKCT--ACNAAF 509
+ + +C + C K + +LK H R H+ + P+ C+ C F
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGE----KPFSCSWKGCERRF 59
Query: 510 NTKSALNVHRKT 521
L+ HR+T
Sbjct: 60 ARSDELSRHRRT 71
Score = 32.7 bits (75), Expect = 0.053
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 213 HLGTHQKVAHSGVTYNCKF--CSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQY--CNKEF 268
Q + ++ C C + + + H +T H EK F C + C + F
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRT----HTGEKPFSCSWKGCERRF 59
Query: 269 PFQGYLNKHMKTH 281
L++H +TH
Sbjct: 60 ARSDELSRHRRTH 72
Score = 31.2 bits (71), Expect = 0.19
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 127 HLTETPEERP-RCEV--CGKTFGLKEYLRRHMRTHRVERKY 164
++ R C CGKT+ +L+ H RTH E+ +
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPF 48
Score = 29.7 bits (67), Expect = 0.63
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 95 HKLCHEPPR-FTCEY--CVKPFRRTQELRNHVKAVHLTETPEERPRCEV--CGKTFGLKE 149
++ R C + C K + ++ L+ H + T T E+ C C + F +
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTR----THTGEKPFSCSWKGCERRFARSD 63
Query: 150 YLRRHMRTH 158
L RH RTH
Sbjct: 64 ELSRHRRTH 72
Score = 29.7 bits (67), Expect = 0.63
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 646 HKLCHEPPR-FTCEY--CVKPFRRTQELRNHVKAVHLTETPEERPRCEV--CGKTFGLKE 700
++ R C + C K + ++ L+ H + T T E+ C C + F +
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTR----THTGEKPFSCSWKGCERRFARSD 63
Query: 701 YLRRHMRTH 709
L RH RTH
Sbjct: 64 ELSRHRRTH 72
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 8e-08
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKPYKC +CG AF N S H+
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQ 32
Score = 44.1 bits (105), Expect = 3e-06
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C C K F + +H R+HT ++P
Sbjct: 7 GTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 36.0 bits (84), Expect = 0.002
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +C CGK FG +H R H +R G
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG 46
Score = 29.9 bits (68), Expect = 0.38
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +C CGK FG +H R H +R
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRPS 41
Score = 29.1 bits (66), Expect = 0.67
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 486 HLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PYKC C AF S+ H++
Sbjct: 3 SGSSGTGE----KPYKCMECGKAFGDNSSCTQHQRL 34
Score = 26.8 bits (60), Expect = 4.0
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 705 HMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ YKC+ CG F N S H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 8e-08
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKPY+C CG AF+ SL H+
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQ 32
Score = 44.8 bits (107), Expect = 2e-06
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCK 880
EK Y C C K F+ + L H +HT +KP
Sbjct: 7 GTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 35.2 bits (82), Expect = 0.004
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P C CGK F ++ L H H ++ G
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSSG 46
Score = 29.4 bits (67), Expect = 0.49
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P C CGK F ++ L H H ++
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKPS 41
Score = 29.4 bits (67), Expect = 0.51
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PY+C C AF+ +S+L H+
Sbjct: 2 SSGSSGTGE----KPYECNQCGKAFSVRSSLTTHQAI 34
Score = 26.7 bits (60), Expect = 4.6
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+ E+ Y+C CG F+ SL H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
Score = 26.0 bits (58), Expect = 8.5
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 425 QHQKAAHSGVC-YDCTFCGKGFTRKAELNIH 454
+ +G Y+C CGK F+ ++ L H
Sbjct: 2 SSGSS-GTGEKPYECNQCGKAFSVRSSLTTH 31
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 8e-08
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
+ EKP+KCK+CG AF N+ L +H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHL 32
Score = 44.4 bits (106), Expect = 2e-06
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK + C+ C K F +L H+R+HT EKP
Sbjct: 7 GSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.003
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +C+ CGK F +L H+R H E+ G
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG 46
Score = 29.0 bits (66), Expect = 0.64
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
S + P+KC C AF L H +
Sbjct: 2 SSGSSGSGE----KPFKCKECGKAFRQNIHLASHLRI 34
Score = 29.0 bits (66), Expect = 0.73
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +C+ CGK F +L H+R H E+
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKPS 41
Score = 27.1 bits (61), Expect = 3.1
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ +KC CG F N+ L H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASH 31
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 8e-08
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKPYKC+ CG +N +L H+
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQ 32
Score = 45.2 bits (108), Expect = 1e-06
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 838 GIHLK-HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
G EK Y CE C K + L H +VHT E+P
Sbjct: 1 GSSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 36.7 bits (86), Expect = 0.001
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +CE CGK + K L H + H ER G
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG 46
Score = 31.0 bits (71), Expect = 0.12
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 486 HLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PYKC C +N+K L++H+K
Sbjct: 3 SGSSGTGE----KPYKCEKCGKGYNSKFNLDMHQKV 34
Score = 30.6 bits (70), Expect = 0.20
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +CE CGK + K L H + H ER
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERPS 41
Score = 28.3 bits (64), Expect = 1.3
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 705 HMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ YKC CG G+N +L +H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
Score = 27.5 bits (62), Expect = 2.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y C CGKG+ K L++H
Sbjct: 13 YKCEKCGKGYNSKFNLDMH 31
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 8e-08
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
+ EKPY C CG AF + L H+
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQ 32
Score = 46.0 bits (110), Expect = 7e-07
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y+C+YC K F L RH R+HT EKP
Sbjct: 7 GSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 0.001
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P C+ CGK FGL L RH R H E+ G
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG 46
Score = 30.9 bits (71), Expect = 0.15
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P C+ CGK FGL L RH R H E+
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKPS 41
Score = 29.8 bits (68), Expect = 0.32
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
S + PY C C AF + L H++
Sbjct: 2 SSGSSGSGE----KPYVCDYCGKAFGLSAELVRHQRI 34
Score = 26.7 bits (60), Expect = 3.7
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+ E+ Y C CG F + L H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
Score = 26.3 bits (59), Expect = 6.0
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 425 QHQKAAHSG-VCYDCTFCGKGFTRKAELNIH 454
+ SG Y C +CGK F AEL H
Sbjct: 2 SSGSS-GSGEKPYVCDYCGKAFGLSAELVRH 31
Score = 25.6 bits (57), Expect = 9.6
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 462 HQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTA 504
E+ +VC YC K F L RH R+H+ + P ++
Sbjct: 7 GSGEKPYVCDYCGKAFGLSAELVRHQRIHTGE----KPSGPSS 45
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 9e-08
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKP+KC CG +F L H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHS 32
Score = 46.7 bits (112), Expect = 3e-07
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK + C+ C K F + L RH VHT EKP
Sbjct: 7 GTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 40.2 bits (95), Expect = 7e-05
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +C++CGK+F + L RH H E+ G
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG 46
Score = 32.5 bits (75), Expect = 0.037
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +C++CGK+F + L RH H E+
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKPS 41
Score = 30.2 bits (69), Expect = 0.23
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 486 HLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + P+KC C +F +S LN H
Sbjct: 3 SGSSGTGE----KPFKCDICGKSFCGRSRLNRHSMV 34
Score = 27.8 bits (63), Expect = 1.5
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 705 HMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+ E+ +KC +CG F L H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
Score = 26.7 bits (60), Expect = 4.6
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
+ C CGK F ++ LN H
Sbjct: 13 FKCDICGKSFCGRSRLNRH 31
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 48.3 bits (116), Expect = 1e-07
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKPYKC++CG F L H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHH 32
Score = 46.8 bits (112), Expect = 3e-07
Identities = 16/37 (43%), Positives = 16/37 (43%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y CE C K F L H VHT EKP
Sbjct: 7 GTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 4e-04
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +CE CGK F + L H H E+ G
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG 46
Score = 31.4 bits (72), Expect = 0.100
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +CE CGK F + L H H E+
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKPS 41
Score = 28.3 bits (64), Expect = 1.0
Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 4/36 (11%)
Query: 486 HLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PYKC C F + L H
Sbjct: 3 SGSSGTGE----KPYKCEECGKGFICRRDLYTHHMV 34
Score = 27.5 bits (62), Expect = 2.1
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 705 HMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ YKC CG GF L H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTH 31
Score = 27.1 bits (61), Expect = 3.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y C CGKGF + +L H
Sbjct: 13 YKCEECGKGFICRRDLYTH 31
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.2 bits (116), Expect = 1e-07
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKPYKC +CG F N L H+
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHR 32
Score = 44.0 bits (105), Expect = 3e-06
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C C K FT ++L RH +HT EKP
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 35.5 bits (83), Expect = 0.003
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +C CGK F +L RH H E+ G
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSSG 46
Score = 29.4 bits (67), Expect = 0.44
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PYKC C F S L HR
Sbjct: 2 SSGSSGTGE----KPYKCNECGKVFTQNSHLVRHRGI 34
Score = 29.0 bits (66), Expect = 0.65
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +C CGK F +L RH H E+
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKPS 41
Score = 27.1 bits (61), Expect = 3.5
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+ E+ YKC CG F N L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 1e-07
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
T E+PY C CG AF +L H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 45.6 bits (109), Expect = 8e-07
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
E+ YIC C K FT + L +H ++HT EKP
Sbjct: 7 GTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 0.001
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
ERP C VCGK F + L +H + H E+ G
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG 46
Score = 30.5 bits (70), Expect = 0.21
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PY CT C AF +S L H+K
Sbjct: 2 SSGSSGTGE----RPYICTVCGKAFTDRSNLIKHQKI 34
Score = 30.5 bits (70), Expect = 0.21
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
ERP C VCGK F + L +H + H E+
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKPS 41
Score = 28.2 bits (64), Expect = 1.2
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+ ER Y C VCG F +L H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 27.1 bits (61), Expect = 3.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y CT CGK FT ++ L H
Sbjct: 13 YICTVCGKAFTDRSNLIKH 31
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 1e-07
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
+ EKPYKC+DCG +N ++L H+
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQ 32
Score = 47.1 bits (113), Expect = 2e-07
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
+EK Y CE C K + L H RVH EK
Sbjct: 7 GSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 37.1 bits (87), Expect = 9e-04
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +CE CGK + + L H R H E+ G
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG 46
Score = 31.7 bits (73), Expect = 0.069
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +CE CGK + + L H R H E+
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTS 41
Score = 31.3 bits (72), Expect = 0.098
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 486 HLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
S + PYKC C +N + L++H++
Sbjct: 3 SGSSGSVE----KPYKCEDCGKGYNRRLNLDMHQRV 34
Score = 30.2 bits (69), Expect = 0.24
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 705 HMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+ VE+ YKC CG G+N ++L +H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
Score = 29.4 bits (67), Expect = 0.41
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 425 QHQKAAHSGV-CYDCTFCGKGFTRKAELNIH 454
+ S Y C CGKG+ R+ L++H
Sbjct: 2 SSGSS-GSVEKPYKCEDCGKGYNRRLNLDMH 31
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 1e-07
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKPYKC +CG AF SL H+
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQ 32
Score = 44.5 bits (106), Expect = 2e-06
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C C K F + L H H+ EKP
Sbjct: 7 GTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 37.5 bits (88), Expect = 7e-04
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +C CGK F + L H TH E+ G
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSSG 46
Score = 30.6 bits (70), Expect = 0.16
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +C CGK F + L H TH E+
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKPS 41
Score = 30.6 bits (70), Expect = 0.16
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PYKC C AF +S+L +H+ T
Sbjct: 2 SSGSSGTGE----KPYKCNECGKAFRARSSLAIHQAT 34
Score = 27.1 bits (61), Expect = 2.7
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ YKC CG F SL +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIH 31
Score = 26.0 bits (58), Expect = 7.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y C CGK F ++ L IH
Sbjct: 13 YKCNECGKAFRARSSLAIH 31
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 47.9 bits (115), Expect = 1e-07
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
T EKPY+CK+CG AF+ L H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQH 31
Score = 43.6 bits (104), Expect = 4e-06
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C+ C K F+ +L +H RVHT EKP
Sbjct: 7 GTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.003
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 677 VHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E P E C+ CGK F +L +H R H E+ G
Sbjct: 6 SGTGEKPYE---CKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG 46
Score = 29.0 bits (66), Expect = 0.64
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 126 VHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E P E C+ CGK F +L +H R H E+
Sbjct: 6 SGTGEKPYE---CKECGKAFSQTTHLIQHQRVHTGEKPS 41
Score = 28.2 bits (64), Expect = 1.1
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PY+C C AF+ + L H++
Sbjct: 2 SSGSSGTGE----KPYECKECGKAFSQTTHLIQHQRV 34
Score = 26.3 bits (59), Expect = 6.7
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ Y+C CG F+ L H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQH 31
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 1e-07
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EK Y CK+CG +F+ L H+
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHE 32
Score = 44.8 bits (107), Expect = 2e-06
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C+ C K F+ L +H R+H+ EKP
Sbjct: 7 GTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.003
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+ C+ CGK+F L +H R H E+ G
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG 46
Score = 29.4 bits (67), Expect = 0.41
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+ C+ CGK+F L +H R H E+
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKPS 41
Score = 28.3 bits (64), Expect = 1.1
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 4/36 (11%)
Query: 486 HLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + Y C C +F+ L H +
Sbjct: 3 SGSSGTGE----KLYNCKECGKSFSRAPCLLKHERL 34
Score = 27.5 bits (62), Expect = 2.2
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 705 HMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ Y C CG F+ L H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
Score = 26.0 bits (58), Expect = 7.3
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 462 HQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTA 504
E+ + C+ C K F L +H R+HS + P ++
Sbjct: 7 GTGEKLYNCKECGKSFSRAPCLLKHERLHSGE----KPSGPSS 45
Score = 26.0 bits (58), Expect = 8.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y+C CGK F+R L H
Sbjct: 13 YNCKECGKSFSRAPCLLKH 31
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-07
Identities = 14/30 (46%), Positives = 14/30 (46%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
T EKPYKC DCG AF L H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 44.4 bits (106), Expect = 2e-06
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C C K FT + L H + HT E+
Sbjct: 7 GTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 36.7 bits (86), Expect = 0.001
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +C CGK F K L H ++H ER G
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSSG 46
Score = 32.5 bits (75), Expect = 0.037
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PYKC+ C AF KS L++H+++
Sbjct: 2 SSGSSGTGE----KPYKCSDCGKAFTRKSGLHIHQQS 34
Score = 30.6 bits (70), Expect = 0.19
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +C CGK F K L H ++H ER
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGERHS 41
Score = 29.4 bits (67), Expect = 0.43
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y C+ CGK FTRK+ L+IH
Sbjct: 13 YKCSDCGKAFTRKSGLHIH 31
Score = 27.9 bits (63), Expect = 1.8
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ YKC CG F L +H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 48.5 bits (115), Expect = 1e-07
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 864 LRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNSSCPK 902
+ ++H ++ KC CG F +L K C K
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTPMCEK 44
Score = 42.0 bits (98), Expect = 4e-05
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 11/75 (14%)
Query: 803 HLAIHKKHSHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYN 862
+K + C CG F R++ KT +CE C K+
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRST-----------LSRRKTPMCEKCRKDSCQEA 53
Query: 863 YLRRHMRVHTNEKPY 877
L + + +K
Sbjct: 54 ALNKDEGNESGKKTS 68
Score = 40.0 bits (93), Expect = 2e-04
Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 7/54 (12%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
H +++ C C F + K C+ C +L +
Sbjct: 13 HLGDRSQKCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQEAALNKDE 59
Score = 34.6 bits (79), Expect = 0.013
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 11/70 (15%)
Query: 422 HLQQHQKAAHSGVCYDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMK 481
+ QK C+ CG F R++ L+ + +C+ C KD
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-----------KTPMCEKCRKDSCQEA 53
Query: 482 YLKRHLRVHS 491
L + S
Sbjct: 54 ALNKDEGNES 63
Score = 33.9 bits (77), Expect = 0.025
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 11/69 (15%)
Query: 213 HLGTHQKVAHSGVTYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQG 272
G QK+ + C C + F R K +C+ C K+ +
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRR-----------STLSRRKTPMCEKCRKDSCQEA 53
Query: 273 YLNKHMKTH 281
LNK
Sbjct: 54 ALNKDEGNE 62
Score = 33.5 bits (76), Expect = 0.030
Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 12/75 (16%)
Query: 91 NLAEHKLCHEPPR-FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKE 149
+ + + H R C C F R L + + P CE C K +
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTL-----------SRRKTPMCEKCRKDSCQEA 53
Query: 150 YLRRHMRTHRVERKY 164
L + ++
Sbjct: 54 ALNKDEGNESGKKTS 68
Score = 33.5 bits (76), Expect = 0.030
Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 12/75 (16%)
Query: 642 NLAEHKLCHEPPR-FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKE 700
+ + + H R C C F R L + + P CE C K +
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTL-----------SRRKTPMCEKCRKDSCQEA 53
Query: 701 YLRRHMRTHRVERKY 715
L + ++
Sbjct: 54 ALNKDEGNESGKKTS 68
Score = 28.1 bits (62), Expect = 2.6
Identities = 11/60 (18%), Positives = 15/60 (25%), Gaps = 11/60 (18%)
Query: 462 HQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
H ++ C C F L R C C ++ALN
Sbjct: 13 HLGDRSQKCSKCGIIFIRRSTLSRR-----------KTPMCEKCRKDSCQEAALNKDEGN 61
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 2e-07
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
T EKPYKC DCG +F L+ H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 46.0 bits (110), Expect = 6e-07
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C C K FT+ + LR H + HT E+
Sbjct: 7 GTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 37.1 bits (87), Expect = 7e-04
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +C CGK+F K LR H + H ER G
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG 46
Score = 32.1 bits (74), Expect = 0.056
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +C CGK+F K LR H + H ER
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGERHS 41
Score = 31.0 bits (71), Expect = 0.13
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 486 HLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PYKC+ C +F KS L +H+K
Sbjct: 3 SGSSGTGE----KPYKCSDCGKSFTWKSRLRIHQKC 34
Score = 28.3 bits (64), Expect = 1.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y C+ CGK FT K+ L IH
Sbjct: 13 YKCSDCGKSFTWKSRLRIH 31
Score = 27.9 bits (63), Expect = 1.6
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 705 HMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ YKC CG F + L++H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 2e-07
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKPY+C +CG AF +L H+
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQ 32
Score = 44.4 bits (106), Expect = 2e-06
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C C K F L +H R+HT EKP
Sbjct: 7 GTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 35.9 bits (84), Expect = 0.002
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P RC CGK F K L +H R H E+ G
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSSG 46
Score = 29.8 bits (68), Expect = 0.30
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PY+C C AF K+ L H++
Sbjct: 2 SSGSSGTGE----KPYRCGECGKAFAQKANLTQHQRI 34
Score = 29.8 bits (68), Expect = 0.35
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P RC CGK F K L +H R H E+
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKPS 41
Score = 27.1 bits (61), Expect = 3.5
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ Y+C CG F +L H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQH 31
Score = 26.3 bits (59), Expect = 5.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y C CGK F +KA L H
Sbjct: 13 YRCGECGKAFAQKANLTQH 31
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 47.5 bits (114), Expect = 2e-07
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
+ EKPY+C +CG AF L H+
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHE 32
Score = 43.3 bits (103), Expect = 5e-06
Identities = 11/37 (29%), Positives = 13/37 (35%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C C K F + + L H R H
Sbjct: 7 GSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 34.4 bits (80), Expect = 0.008
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKC 717
E+P C CGK F K L H RTH
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 31.0 bits (71), Expect = 0.13
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYN 165
E+P C CGK F K L H RTH +
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAGVSGPS 42
Score = 31.0 bits (71), Expect = 0.13
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
S + PY+C C AF KS L VH +T
Sbjct: 2 SSGSSGSGE----KPYECNECGKAFIWKSLLIVHERT 34
Score = 28.7 bits (65), Expect = 0.87
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ Y+C CG F + L VH
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVH 31
Score = 26.7 bits (60), Expect = 4.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y+C CGK F K+ L +H
Sbjct: 13 YECNECGKAFIWKSLLIVH 31
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 47.5 bits (114), Expect = 2e-07
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
Y C C K F+ L H R+HT EKP
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 44.1 bits (105), Expect = 3e-06
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
PYKC C +F+ + L H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 36.7 bits (86), Expect = 0.001
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
P +C C K+F K L H R H E+ G
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG 46
Score = 31.4 bits (72), Expect = 0.10
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
P +C C K+F K L H R H E+
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREKPS 41
Score = 29.4 bits (67), Expect = 0.45
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
PYKC+ C +F+ K L VH++
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRM 34
Score = 28.3 bits (64), Expect = 1.2
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 705 HMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+ YKC C F+ + L VH
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 27.5 bits (62), Expect = 1.9
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y C+ C K F+ K L +H
Sbjct: 13 YKCSQCEKSFSGKLRLLVH 31
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 2e-07
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
T EKPY+C +CG AF +L H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 46.3 bits (111), Expect = 5e-07
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C C K FT + L H ++HT EKP
Sbjct: 7 GTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 35.9 bits (84), Expect = 0.002
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P RC CGK F + L H + H E+ G
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG 46
Score = 29.4 bits (67), Expect = 0.47
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
PY+C C AF +S L H+K
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKI 34
Score = 29.4 bits (67), Expect = 0.48
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P RC CGK F + L H + H E+
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKPS 41
Score = 27.1 bits (61), Expect = 3.3
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ Y+C CG F +L H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 27.1 bits (61), Expect = 3.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y C CGK FT ++ L H
Sbjct: 13 YRCAECGKAFTDRSNLFTH 31
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 47.5 bits (114), Expect = 2e-07
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
EKPY C+ CG F H +LK+H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSH 30
Score = 46.7 bits (112), Expect = 3e-07
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKPY 877
EK Y CE C F L+ H+R+HT P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 39.0 bits (92), Expect = 2e-04
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYNG 166
E+P CE+CG F + L+ H+R H +G
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG 42
Score = 37.5 bits (88), Expect = 6e-04
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 715
E+P CE+CG F + L+ H+R H
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 32.5 bits (75), Expect = 0.034
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 256 EKKFVCQYCNKEFPFQGYLNKHMKTH 281
EK + C+ C F L H++ H
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 31.3 bits (72), Expect = 0.078
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 705 HMRTHRVERKYKC-VCGDGFNFNVSLKVHM 733
+ E+ Y C +CG F +LK H+
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHL 31
Score = 27.8 bits (63), Expect = 1.4
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
PY C C F L H +
Sbjct: 11 PYPCEICGTRFRHLQTLKSHLRI 33
Score = 27.8 bits (63), Expect = 1.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 468 FVCQYCNKDFPFMKYLKRHLRVH 490
+ C+ C F ++ LK HLR+H
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIH 34
Score = 25.9 bits (58), Expect = 6.4
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 436 YDCTFCGKGFTRKAELNIHI 455
Y C CG F L H+
Sbjct: 12 YPCEICGTRFRHLQTLKSHL 31
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 2e-07
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
T EKPY C +CG AF +L H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKH 31
Score = 45.2 bits (108), Expect = 1e-06
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK YIC C K FT + L +H ++HT +KP
Sbjct: 7 GTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 35.6 bits (83), Expect = 0.003
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P C CGK F ++ L +H + H ++ G
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG 46
Score = 29.0 bits (66), Expect = 0.64
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P C CGK F ++ L +H + H ++
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKPS 41
Score = 28.2 bits (64), Expect = 1.0
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
PY C C AF +S L H+K
Sbjct: 12 PYICAECGKAFTIRSNLIKHQKI 34
Score = 26.7 bits (60), Expect = 4.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y C CGK FT ++ L H
Sbjct: 13 YICAECGKAFTIRSNLIKH 31
Score = 25.9 bits (58), Expect = 8.2
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 705 HMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ Y C CG F +L H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKH 31
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 2e-07
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKPYKC +CG F N L NH+
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQ 32
Score = 44.4 bits (106), Expect = 2e-06
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C C K FT ++L H R+HT KP
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 35.2 bits (82), Expect = 0.004
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +C CGK F +L H R H + G
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG 46
Score = 29.4 bits (67), Expect = 0.41
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PYKC C F S L H++
Sbjct: 2 SSGSSGTGE----KPYKCNECGKVFTQNSHLANHQRI 34
Score = 29.0 bits (66), Expect = 0.64
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +C CGK F +L H R H +
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKPS 41
Score = 27.1 bits (61), Expect = 3.2
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+ E+ YKC CG F N L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANH 31
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 2e-07
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
+K +KC +C F + SL H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
Score = 44.8 bits (107), Expect = 1e-06
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
+K + C C K FT + L H R+HT EKP
Sbjct: 7 GAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 35.9 bits (84), Expect = 0.002
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
++ +C C KTF L H R H E+ G
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSSG 46
Score = 29.8 bits (68), Expect = 0.40
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
++ +C C KTF L H R H E+
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKPS 41
Score = 29.0 bits (66), Expect = 0.59
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 486 HLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ +KC C F S+L VH++
Sbjct: 3 SGSSGAGK----KLFKCNECKKTFTQSSSLTVHQRI 34
Score = 27.5 bits (62), Expect = 2.4
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 705 HMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+ ++ +KC C F + SL VH
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
Score = 25.9 bits (58), Expect = 9.0
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
+ C C K FT+ + L +H
Sbjct: 13 FKCNECKKTFTQSSSLTVH 31
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 2e-07
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
T EKP+KC +CG ++N V L H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
Score = 43.3 bits (103), Expect = 5e-06
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK + C C K + +L +H RVHT EKP
Sbjct: 7 GTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.008
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +C CGK++ + +L +H R H E+ G
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG 46
Score = 29.8 bits (68), Expect = 0.37
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + P+KC C ++N + L H++
Sbjct: 2 SSGSSGTGE----KPFKCGECGKSYNQRVHLTQHQRV 34
Score = 29.4 bits (67), Expect = 0.51
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +C CGK++ + +L +H R H E+
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKPS 41
Score = 27.5 bits (62), Expect = 2.6
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ +KC CG +N V L H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 2e-07
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKPY C CG AF + L H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHL 32
Score = 47.1 bits (113), Expect = 2e-07
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCK 880
EK Y C C K F +L +H+RVHT E
Sbjct: 7 GTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 38.6 bits (91), Expect = 3e-04
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P C VCGK F L +L +H+R H E G
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSSG 46
Score = 32.9 bits (76), Expect = 0.030
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P C VCGK F L +L +H+R H E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQETLS 41
Score = 28.2 bits (64), Expect = 1.1
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PY C C AF + LN H +
Sbjct: 2 SSGSSGTGE----KPYSCNVCGKAFVLSAHLNQHLRV 34
Score = 28.2 bits (64), Expect = 1.1
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 704 RHMRTHRVERKYKC-VCGDGFNFNVSLKVHM 733
+ E+ Y C VCG F + L H+
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHL 32
Score = 27.5 bits (62), Expect = 2.2
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 425 QHQKAAHSG-VCYDCTFCGKGFTRKAELNIH 454
+ +G Y C CGK F A LN H
Sbjct: 2 SSGSS-GTGEKPYSCNVCGKAFVLSAHLNQH 31
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 47.1 bits (113), Expect = 2e-07
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
EKPYKC+ CGA F L+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHV 31
Score = 46.0 bits (110), Expect = 5e-07
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPY 877
EK Y CE C F +LR H+ +HT P
Sbjct: 6 SGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 38.7 bits (91), Expect = 2e-04
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYNG 166
E+P +CE CG F +LR H+ H +G
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG 42
Score = 36.0 bits (84), Expect = 0.002
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 715
E+P +CE CG F +LR H+ H
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 30.6 bits (70), Expect = 0.18
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 705 HMRTHRVERKYKC-VCGDGFNFNVSLKVHM 733
+ E+ YKC CG F L+ H+
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHV 31
Score = 28.3 bits (64), Expect = 1.1
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 253 HMLEKKFVCQYCNKEFPFQGYLNKHMKTH 281
EK + C+ C F +L H+ H
Sbjct: 6 SGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 27.9 bits (63), Expect = 1.6
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
PYKC C A F + L H
Sbjct: 11 PYKCETCGARFVQVAHLRAHVLI 33
Score = 25.9 bits (58), Expect = 6.5
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y C CG F + A L H
Sbjct: 12 YKCETCGARFVQVAHLRAH 30
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 47.1 bits (113), Expect = 2e-07
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
T EKP+KC +CG F+ +L H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
Score = 44.8 bits (107), Expect = 2e-06
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK + C C K F+ + L H ++HT EKP
Sbjct: 7 GTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 0.002
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +C CGK F + L H + H E+ G
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG 46
Score = 31.0 bits (71), Expect = 0.15
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
P+KC C F+ +SALNVH K
Sbjct: 12 PFKCVECGKGFSRRSALNVHHKL 34
Score = 29.8 bits (68), Expect = 0.35
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +C CGK F + L H + H E+
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKPS 41
Score = 29.0 bits (66), Expect = 0.64
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ +KCV CG GF+ +L VH
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
Score = 28.6 bits (65), Expect = 1.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
+ C CGKGF+R++ LN+H
Sbjct: 13 FKCVECGKGFSRRSALNVH 31
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 2e-07
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
EK YKC CG F+ + L+ H+
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQ 32
Score = 46.4 bits (111), Expect = 5e-07
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 838 GIHLK-HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
G EK Y C+ C KEF+ ++L+ H RVHT EKP
Sbjct: 1 GSSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 7e-04
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+ +C+VCGK F +L+ H R H E+ G
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSSG 46
Score = 31.0 bits (71), Expect = 0.11
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+ +C+VCGK F +L+ H R H E+
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPS 41
Score = 28.6 bits (65), Expect = 1.0
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 4/36 (11%)
Query: 486 HLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ YKC C F+ S L H++
Sbjct: 3 SGSSGMGE----KCYKCDVCGKEFSQSSHLQTHQRV 34
Score = 27.9 bits (63), Expect = 1.8
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 705 HMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+ E+ YKC VCG F+ + L+ H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 47.1 bits (113), Expect = 2e-07
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T ++PY+C +CG AF SL H+
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHR 32
Score = 44.1 bits (105), Expect = 3e-06
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCK 880
++ Y C C K F + L H R HT EKP
Sbjct: 7 GTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 37.1 bits (87), Expect = 9e-04
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
+RP C CGK F K L H R+H E+ G
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSSG 46
Score = 32.5 bits (75), Expect = 0.042
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ PY+C C AF TKS+L HR++
Sbjct: 2 SSGSSGTGQ----RPYECIECGKAFKTKSSLICHRRS 34
Score = 31.4 bits (72), Expect = 0.094
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
+RP C CGK F K L H R+H E+
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKPS 41
Score = 27.5 bits (62), Expect = 2.6
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ +R Y+C+ CG F SL H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICH 31
Score = 26.3 bits (59), Expect = 6.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y+C CGK F K+ L H
Sbjct: 13 YECIECGKAFKTKSSLICH 31
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.2 bits (113), Expect = 2e-07
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK + C+ C F++ L +H+R H P
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 46.8 bits (112), Expect = 3e-07
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKP++CK+CG F+ + SL H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHL 32
Score = 42.6 bits (101), Expect = 9e-06
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +C+ CG F L +H+R+H G
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSSG 46
Score = 38.7 bits (91), Expect = 2e-04
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYNGF 167
E+P +C+ CG F L +H+R+H
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 30.6 bits (70), Expect = 0.16
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 256 EKKFVCQYCNKEFPFQGYLNKHMKTH 281
EK F C+ C F + L KH+++H
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 29.1 bits (66), Expect = 0.67
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 705 HMRTHRVERKYKC-VCGDGFNFNVSLKVHM 733
+ E+ ++C CG F+++ SL H+
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHL 32
Score = 28.3 bits (64), Expect = 1.3
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
P++C C F+ +L H ++
Sbjct: 12 PFQCKECGMNFSWSCSLFKHLRS 34
Score = 27.2 bits (61), Expect = 3.2
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 468 FVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKC 502
F C+ C +F + L +HLR H P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERT----DPSGP 43
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 47.2 bits (113), Expect = 3e-07
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
T +KPY+C +CG AF N SL H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRH 31
Score = 40.2 bits (95), Expect = 7e-05
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMR-VHTNEKPYKC 879
+K Y C C K F L RH R HT EKP
Sbjct: 7 GTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 32.2 bits (74), Expect = 0.045
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMR-THRVERKYKCVCG 720
++P C CGK F L RH R H E+ G
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG 47
Score = 27.9 bits (63), Expect = 1.7
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVH 459
Y+C CGK F + L H + H
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYH 36
Score = 27.5 bits (62), Expect = 2.6
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 819 CPHCGKKFTRKAELQLHIKGIHLKHQLEKTYIC 851
C CGK F + L H + H EK
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHTG---EKPSGP 44
Score = 27.1 bits (61), Expect = 3.1
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 486 HLRVHSNDVQVPHPYKCTACNAAFNTKSALNVH 518
+ PY+C C AF ++L H
Sbjct: 3 SGSSGTGK----KPYECIECGKAFIQNTSLIRH 31
Score = 26.4 bits (59), Expect = 5.2
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 705 HMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ ++ Y+C+ CG F N SL H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRH 31
Score = 26.4 bits (59), Expect = 5.8
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMR-THRVERKY 164
++P C CGK F L RH R H E+
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKPS 42
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 3e-07
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
T E+P+KC +CG +F + L H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQH 31
Score = 43.7 bits (104), Expect = 3e-06
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
E+ + C C K F +L +H R+HT EKP
Sbjct: 7 GTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.003
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
ERP +C CGK+F +L +H R H E+ G
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG 46
Score = 29.8 bits (68), Expect = 0.35
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
ERP +C CGK+F +L +H R H E+
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKPS 41
Score = 28.6 bits (65), Expect = 1.0
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + P+KC C +F + L H++
Sbjct: 2 SSGSSGTGE----RPHKCNECGKSFIQSAHLIQHQRI 34
Score = 28.2 bits (64), Expect = 1.3
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ ER +KC CG F + L H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQH 31
Score = 25.9 bits (58), Expect = 8.1
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
+ C CGK F + A L H
Sbjct: 13 HKCNECGKSFIQSAHLIQH 31
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 3e-07
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
EKPY+C +CG +F+ + L H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHW 32
Score = 46.0 bits (110), Expect = 6e-07
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
+ EK Y C C K F+ L +H HT EKP
Sbjct: 7 GEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 37.9 bits (89), Expect = 5e-04
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +C CGK+F L +H TH E+ G
Sbjct: 10 EKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG 46
Score = 32.1 bits (74), Expect = 0.052
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +C CGK+F L +H TH E+
Sbjct: 10 EKPYQCSECGKSFSGSYRLTQHWITHTREKPS 41
Score = 29.4 bits (67), Expect = 0.44
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
PY+C+ C +F+ L H T
Sbjct: 12 PYQCSECGKSFSGSYRLTQHWIT 34
Score = 26.7 bits (60), Expect = 4.0
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 705 HMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+ E+ Y+C CG F+ + L H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
Score = 26.4 bits (59), Expect = 5.4
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y C+ CGK F+ L H
Sbjct: 13 YQCSECGKSFSGSYRLTQH 31
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 3e-07
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCK 880
+K Y C+ C K F +L +H RVHT E+
Sbjct: 7 GSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 43.3 bits (103), Expect = 6e-06
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
+ +KPY+CK+C F L HK
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHK 32
Score = 36.4 bits (85), Expect = 0.001
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKC 717
++P C+ C KTF +L +H R H ER
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 32.1 bits (74), Expect = 0.043
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
++P C+ C KTF +L +H R H ER
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGERSS 41
Score = 27.9 bits (63), Expect = 1.7
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
PY+C C F LN H++
Sbjct: 12 PYECKECRKTFIQIGHLNQHKRV 34
Score = 27.5 bits (62), Expect = 2.5
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y+C C K F + LN H
Sbjct: 13 YECKECRKTFIQIGHLNQH 31
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 3e-07
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
+ EKP++C++CG F N L +H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
Score = 44.8 bits (107), Expect = 1e-06
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK + CE C K FT ++L H RVHT EKP
Sbjct: 7 GSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.003
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +CE CGK F +L H R H E+ G
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSSG 46
Score = 29.4 bits (67), Expect = 0.41
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +CE CGK F +L H R H E+
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKPS 41
Score = 29.1 bits (66), Expect = 0.59
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
S + P++C C F S L+ H++
Sbjct: 2 SSGSSGSGE----KPFQCEECGKRFTQNSHLHSHQRV 34
Score = 27.1 bits (61), Expect = 2.8
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ ++C CG F N L H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
Score = 26.4 bits (59), Expect = 6.0
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 425 QHQKAAHSGV-CYDCTFCGKGFTRKAELNIH 454
+ SG + C CGK FT+ + L+ H
Sbjct: 2 SSGSS-GSGEKPFQCEECGKRFTQNSHLHSH 31
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 3e-07
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
T EKP++C +C AFN +L H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 44.8 bits (107), Expect = 2e-06
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK + C C K F + L H R HT EKP
Sbjct: 7 GTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 3e-04
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P C C K F K L H RTH E+ G
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSSG 46
Score = 31.7 bits (73), Expect = 0.071
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P C C K F K L H RTH E+
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKPS 41
Score = 31.3 bits (72), Expect = 0.11
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + P++C+ C AFNTKS L VH++T
Sbjct: 2 SSGSSGTGE----KPFECSECQKAFNTKSNLIVHQRT 34
Score = 27.4 bits (62), Expect = 2.1
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ ++C C FN +L VH
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 27.1 bits (61), Expect = 2.7
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
++C+ C K F K+ L +H
Sbjct: 13 FECSECQKAFNTKSNLIVH 31
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 3e-07
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T KPY+C +CG AF+ L H+
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQ 32
Score = 45.2 bits (108), Expect = 1e-06
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 838 GIHLK-HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
G K Y C C K F+ + L RH RVHT EKP
Sbjct: 1 GSSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 36.4 bits (85), Expect = 0.001
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
+P +C CGK F L RH R H E+ G
Sbjct: 10 GKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSSG 46
Score = 29.8 bits (68), Expect = 0.33
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
+P +C CGK F L RH R H E+
Sbjct: 10 GKPYQCNECGKAFSQTSKLARHQRVHTGEKPS 41
Score = 28.3 bits (64), Expect = 1.3
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 486 HLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ PY+C C AF+ S L H++
Sbjct: 3 SGSSGTGG----KPYQCNECGKAFSQTSKLARHQRV 34
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 4e-07
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
T EKPY+C CG +F L H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 44.1 bits (105), Expect = 2e-06
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCK 880
EK Y C C K FT + L H ++HT EKP
Sbjct: 7 GTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 36.0 bits (84), Expect = 0.002
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 677 VHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E P E C +CGK+F K L H + H E+ G
Sbjct: 6 SGTGEKPYE---CSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG 46
Score = 30.2 bits (69), Expect = 0.25
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 126 VHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E P E C +CGK+F K L H + H E+
Sbjct: 6 SGTGEKPYE---CSICGKSFTKKSQLHVHQQIHTGEKPS 41
Score = 30.2 bits (69), Expect = 0.25
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PY+C+ C +F KS L+VH++
Sbjct: 2 SSGSSGTGE----KPYECSICGKSFTKKSQLHVHQQI 34
Score = 27.9 bits (63), Expect = 1.5
Identities = 10/19 (52%), Positives = 17/19 (89%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y+C+ CGK FT+K++L++H
Sbjct: 13 YECSICGKSFTKKSQLHVH 31
Score = 26.7 bits (60), Expect = 4.2
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+ E+ Y+C +CG F L VH
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 46.4 bits (111), Expect = 4e-07
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
EKPY+C CG AF+ SL H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHI 31
Score = 40.6 bits (96), Expect = 5e-05
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPY 877
EK Y C+ C K F+ L H+RVHT P
Sbjct: 6 SGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 34.1 bits (79), Expect = 0.010
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYNG 166
E+P RC+ CGK F K L H+R H +G
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG 42
Score = 31.4 bits (72), Expect = 0.090
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 715
E+P RC+ CGK F K L H+R H
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 29.5 bits (67), Expect = 0.36
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 486 HLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ PY+C C AF+ K +L VH +
Sbjct: 2 SSGSSGGE----KPYRCDQCGKAFSQKGSLIVHIRV 33
Score = 27.1 bits (61), Expect = 2.7
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 705 HMRTHRVERKYKCV-CGDGFNFNVSLKVHM 733
+ E+ Y+C CG F+ SL VH+
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHI 31
Score = 27.1 bits (61), Expect = 2.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y C CGK F++K L +H
Sbjct: 12 YRCDQCGKAFSQKGSLIVH 30
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 46.3 bits (111), Expect = 4e-07
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T KPY C +CG AF L H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHT 32
Score = 45.6 bits (109), Expect = 8e-07
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
K Y+C C K F +YL H R HT E
Sbjct: 7 GTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 36.7 bits (86), Expect = 0.001
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKC 717
+P C CGK F K YL H RTH E
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 32.1 bits (74), Expect = 0.042
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
+P C CGK F K YL H RTH E
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGESGP 41
Score = 30.9 bits (71), Expect = 0.15
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ PY C C AF +KS L +H +T
Sbjct: 2 SSGSSGTGM----KPYVCNECGKAFRSKSYLIIHTRT 34
Score = 27.1 bits (61), Expect = 2.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y C CGK F K+ L IH
Sbjct: 13 YVCNECGKAFRSKSYLIIH 31
Score = 27.1 bits (61), Expect = 3.0
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ + Y C CG F L +H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 46.4 bits (111), Expect = 4e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
+ EKP+KC++CG F N +H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 45.2 bits (108), Expect = 1e-06
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCG 883
EK + CE C K F + H R H+ EKP G
Sbjct: 7 GSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP-SSG 46
Score = 38.7 bits (91), Expect = 3e-04
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +CE CGK F H R+H E+ G
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG 46
Score = 30.2 bits (69), Expect = 0.25
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +CE CGK F H R+H E+
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKPS 41
Score = 29.8 bits (68), Expect = 0.31
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 486 HLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
S + P+KC C F T S H+++
Sbjct: 3 SGSSGSGE----KPFKCEECGKGFYTNSQCYSHQRS 34
Score = 27.9 bits (63), Expect = 1.6
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 705 HMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ +KC CG GF N H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 26.7 bits (60), Expect = 4.7
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
+ C CGKGF ++ H
Sbjct: 13 FKCEECGKGFYTNSQCYSH 31
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 4e-07
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
+ EKPYKC +CG + + L H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 44.4 bits (106), Expect = 2e-06
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C C K + L H RVHT EK
Sbjct: 7 GSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 38.7 bits (91), Expect = 3e-04
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +C CGK + + L H R H E+ G
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG 46
Score = 31.3 bits (72), Expect = 0.089
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +C CGK + + L H R H E+
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEKLS 41
Score = 29.8 bits (68), Expect = 0.35
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 486 HLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
S + PYKC C + + L+ H++
Sbjct: 3 SGSSGSGE----KPYKCVECGKGYKRRLDLDFHQRV 34
Score = 29.0 bits (66), Expect = 0.60
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y C CGKG+ R+ +L+ H
Sbjct: 13 YKCVECGKGYKRRLDLDFH 31
Score = 28.7 bits (65), Expect = 1.0
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 705 HMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ YKCV CG G+ + L H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 4e-07
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
E+ + C C K F ++L H+R+H+ EK
Sbjct: 7 GSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 44.8 bits (107), Expect = 2e-06
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
+ E+P+KC +CG F L H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGH 31
Score = 37.9 bits (89), Expect = 5e-04
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
ERP +C CGK FG + +L H+R H E+ G
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSSG 46
Score = 32.9 bits (76), Expect = 0.030
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
ERP +C CGK FG + +L H+R H E+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREKSS 41
Score = 28.7 bits (65), Expect = 0.80
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
P+KC C F +S L H +
Sbjct: 12 PFKCNECGKGFGRRSHLAGHLRL 34
Score = 27.5 bits (62), Expect = 2.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
+ C CGKGF R++ L H
Sbjct: 13 FKCNECGKGFGRRSHLAGH 31
Score = 27.5 bits (62), Expect = 2.5
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+ ER +KC CG GF L H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGH 31
Score = 25.6 bits (57), Expect = 10.0
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 462 HQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTA 504
E+ F C C K F +L HLR+HS + ++
Sbjct: 7 GSGERPFKCNECGKGFGRRSHLAGHLRLHSRE----KSSGPSS 45
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 46.4 bits (111), Expect = 4e-07
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK + C C K F+ +YL H + H EKP
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 40.2 bits (95), Expect = 6e-05
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P C C K F K YL H +TH E+ G
Sbjct: 8 EKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG 44
Score = 38.7 bits (91), Expect = 3e-04
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 869 RVHTNEKPYKCKDCGAAFNHNVSLKNH 895
+ EKP+ C C AF+ L H
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVH 29
Score = 34.4 bits (80), Expect = 0.006
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P C C K F K YL H +TH E+
Sbjct: 8 EKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPS 39
Score = 32.1 bits (74), Expect = 0.049
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
P+ C+ C AF++KS L VH++T
Sbjct: 10 PFGCSCCEKAFSSKSYLLVHQQT 32
Score = 29.4 bits (67), Expect = 0.47
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
+ C+ C K F+ K+ L +H
Sbjct: 11 FGCSCCEKAFSSKSYLLVH 29
Score = 27.1 bits (61), Expect = 2.8
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 253 HMLEKKFVCQYCNKEFPFQGYLNKHMKTH 281
EK F C C K F + YL H +TH
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 26.0 bits (58), Expect = 7.3
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 462 HQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTA 504
E+ F C C K F YL H + H+ + P ++
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEE----KPSGPSS 43
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 5e-07
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T +KPYKC +CG F N L H+
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHR 32
Score = 44.4 bits (106), Expect = 2e-06
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
+K Y C C K FT ++L RH +HT EKP
Sbjct: 7 GTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.003
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
++P +C CGK F +L RH H E+ G
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG 46
Score = 28.6 bits (65), Expect = 0.83
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
++P +C CGK F +L RH H E+
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKPS 41
Score = 27.5 bits (62), Expect = 2.6
Identities = 10/36 (27%), Positives = 11/36 (30%), Gaps = 4/36 (11%)
Query: 486 HLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ PYKC C F S L HR
Sbjct: 3 SGSSGTGK----KPYKCNECGKVFTQNSHLARHRGI 34
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 5e-07
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
T K ++C +CG AF +L H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 43.7 bits (104), Expect = 3e-06
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
K + C C K FT + L H ++HT EKP
Sbjct: 7 GTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.004
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
+ C CGK F K L H + H E+ G
Sbjct: 10 GKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG 46
Score = 30.2 bits (69), Expect = 0.28
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
+ C CGK F K L H + H E+
Sbjct: 10 GKHFECTECGKAFTRKSTLSMHQKIHTGEKPS 41
Score = 29.8 bits (68), Expect = 0.33
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ ++CT C AF KS L++H+K
Sbjct: 2 SSGSSGTGG----KHFECTECGKAFTRKSTLSMHQKI 34
Score = 28.3 bits (64), Expect = 1.3
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
++CT CGK FTRK+ L++H
Sbjct: 13 FECTECGKAFTRKSTLSMH 31
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 5e-07
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
T EKPY+C DCG +F L H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 44.5 bits (106), Expect = 2e-06
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C C K F + L H R+HT E P
Sbjct: 7 GTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 36.0 bits (84), Expect = 0.002
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P C CGK+F K L H R H E G
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSSG 46
Score = 30.6 bits (70), Expect = 0.20
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P C CGK+F K L H R H E
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENPS 41
Score = 29.8 bits (68), Expect = 0.31
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 486 HLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PY+C+ C +F KS L+VH++
Sbjct: 3 SGSSGTGE----KPYECSDCGKSFIKKSQLHVHQRI 34
Score = 28.7 bits (65), Expect = 0.91
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 425 QHQKAAHSGVC-YDCTFCGKGFTRKAELNIH 454
+ +G Y+C+ CGK F +K++L++H
Sbjct: 2 SSGSS-GTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 26.7 bits (60), Expect = 4.3
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 705 HMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ Y+C CG F L VH
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 5e-07
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
T E P+ C +CG F H +L H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 44.4 bits (106), Expect = 2e-06
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
E +IC C K FT L H ++HT E+P
Sbjct: 7 GTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 36.3 bits (85), Expect = 0.002
Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E P C CGK F K L H + H ER G
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSSG 46
Score = 29.8 bits (68), Expect = 0.35
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E P C CGK F K L H + H ER
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERPS 41
Score = 29.4 bits (67), Expect = 0.47
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
P+ C+ C F K+ L +H+K
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKI 34
Score = 27.8 bits (63), Expect = 1.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
+ C+ CGK FT K L IH
Sbjct: 13 FICSECGKVFTHKTNLIIH 31
Score = 27.1 bits (61), Expect = 3.5
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 705 HMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E + C CG F +L +H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH 31
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 5e-07
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 838 GIHLK-HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
G EK Y C C K F+ + L H R HT EKP
Sbjct: 1 GSSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 1e-06
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
+ EKPY C +CG F+ L H+
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQ 32
Score = 36.4 bits (85), Expect = 0.002
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKC 717
E+P C CGKTF K L H RTH E+
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.084
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P C CGKTF K L H RTH E+
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKPS 41
Score = 29.4 bits (67), Expect = 0.43
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 486 HLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
S + PY C C F+ KS L+ H++T
Sbjct: 3 SGSSGSGE----KPYGCNECGKTFSQKSILSAHQRT 34
Score = 26.7 bits (60), Expect = 4.8
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 705 HMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ Y C CG F+ L H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 26.3 bits (59), Expect = 5.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y C CGK F++K+ L+ H
Sbjct: 13 YGCNECGKTFSQKSILSAH 31
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 6e-07
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
T E+ Y+C +CG AF +L H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 43.6 bits (104), Expect = 4e-06
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
E+ Y C C K F + L H R+HT EKP
Sbjct: 7 GTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 6e-04
Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
ER C CGK F K L H R H E+ G
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSSG 46
Score = 31.3 bits (72), Expect = 0.093
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
ER C CGK F K L H R H E+
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKPS 41
Score = 30.5 bits (70), Expect = 0.19
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + Y+C+ C AF KS L +H++
Sbjct: 2 SSGSSGTGE----RHYECSECGKAFARKSTLIMHQRI 34
Score = 27.8 bits (63), Expect = 2.0
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 425 QHQKAAHSG-VCYDCTFCGKGFTRKAELNIH 454
+ +G Y+C+ CGK F RK+ L +H
Sbjct: 2 SSGSS-GTGERHYECSECGKAFARKSTLIMH 31
Score = 26.3 bits (59), Expect = 5.1
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ ER Y+C CG F +L +H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMH 31
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 6e-07
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
T EKPY+CK C AF L H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
Score = 43.7 bits (104), Expect = 4e-06
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCK 880
EK Y C+ C K FT +L +H + HT EKP
Sbjct: 7 GTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.004
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 677 VHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E P E C+VC K F K +L +H +TH E+ G
Sbjct: 6 SGTGEKPYE---CKVCSKAFTQKAHLAQHQKTHTGEKPSGPSSG 46
Score = 30.6 bits (70), Expect = 0.19
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 126 VHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E P E C+VC K F K +L +H +TH E+
Sbjct: 6 SGTGEKPYE---CKVCSKAFTQKAHLAQHQKTHTGEKPS 41
Score = 29.4 bits (67), Expect = 0.45
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PY+C C+ AF K+ L H+KT
Sbjct: 2 SSGSSGTGE----KPYECKVCSKAFTQKAHLAQHQKT 34
Score = 26.7 bits (60), Expect = 5.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y+C C K FT+KA L H
Sbjct: 13 YECKVCSKAFTQKAHLAQH 31
Score = 25.6 bits (57), Expect = 9.5
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+ E+ Y+C VC F L H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 46.6 bits (110), Expect = 6e-07
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 849 YICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNS 898
YICE C + L++H+R HT+ +PY C C +F +L H S
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 42.8 bits (100), Expect = 1e-05
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 817 HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEK 875
++C CG + + + L+ HI+ H + Y C YC+ F L +HM+ + K
Sbjct: 2 YICEECGIRXKKPSMLKKHIR----THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 37.8 bits (87), Expect = 7e-04
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 103 RFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVER 162
++ CE C ++ L+ H++ T T C C +F K L +HM++ +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIR----THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Query: 163 K 163
K
Sbjct: 57 K 57
Score = 37.8 bits (87), Expect = 7e-04
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 654 RFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVER 713
++ CE C ++ L+ H++ T T C C +F K L +HM++ +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIR----THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Query: 714 K 714
K
Sbjct: 57 K 57
Score = 37.4 bits (86), Expect = 0.001
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 688 RCEVCGKTFGLKEYLRRHMRTHRVERKYKC-VCGDGFNFNVSLKVHMAK 735
CE CG L++H+RTH R Y C C F +L HM
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 37.4 bits (86), Expect = 0.001
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 467 RFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+++C+ C LK+H+R H++ PY CT CN +F TK L H K+
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDV----RPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 35.8 bits (82), Expect = 0.004
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 137 RCEVCGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICGFYHKHKKMIYRHIKEHIEP 196
CE CG L++H+RTH R Y+ C C F K K + +H+K
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYH-------CTYCNFSFKTKGNLTKHMKSKAHS 55
Query: 197 KK 198
KK
Sbjct: 56 KK 57
Score = 34.7 bits (79), Expect = 0.008
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSND 493
Y C CG + + L HI+ H + + C YCN F L +H++ ++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRT----HTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 33.2 bits (75), Expect = 0.029
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 227 YNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMKTHNH 283
Y C+ C ++ + + HI+T H + + C YCN F +G L KHMK+ H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRT----HTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 30.1 bits (67), Expect = 0.45
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 258 KFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTFTNKHLFRNHKLF 317
K++C+ C L KH++TH Y C CN +F K H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHT---------DVRPYHCTYCNFSFKTKGNLTKHMKS 51
Query: 318 EADE 321
+A
Sbjct: 52 KAHS 55
Score = 27.0 bits (59), Expect = 4.5
Identities = 11/48 (22%), Positives = 18/48 (37%)
Query: 381 VCYYCGYFNGHKKMIYLHIKDHVAPKKREMKICDICCAEVLHLQQHQK 428
+C CG M+ HI+ H + C+ +L +H K
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 46.0 bits (110), Expect = 6e-07
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
E+ ++C DCG F + H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH 31
Score = 44.5 bits (106), Expect = 2e-06
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
E+ + C C K F + +H R+HT EKP
Sbjct: 7 GHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 36.4 bits (85), Expect = 0.002
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
ER RC CGK F +H R H E+ G
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSSG 46
Score = 31.7 bits (73), Expect = 0.071
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
ER RC CGK F +H R H E+
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKPS 41
Score = 28.7 bits (65), Expect = 0.82
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
++C+ C F S HR+
Sbjct: 12 GHRCSDCGKFFLQASNFIQHRRI 34
Score = 27.5 bits (62), Expect = 2.5
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+ ER ++C CG F + H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH 31
Score = 26.0 bits (58), Expect = 6.9
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
+ C+ CGK F + + H
Sbjct: 13 HRCSDCGKFFLQASNFIQH 31
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 6e-07
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
E+ Y C C K F +++L H++ H EK
Sbjct: 7 GSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 44.8 bits (107), Expect = 2e-06
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
+ E+PY C +CG F + L H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHL 32
Score = 41.3 bits (98), Expect = 2e-05
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
ERP C CGK FG +L H++ H E+ G
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG 46
Score = 35.6 bits (83), Expect = 0.003
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
ERP C CGK FG +L H++ H E+
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFREKSS 41
Score = 28.6 bits (65), Expect = 0.98
Identities = 9/23 (39%), Positives = 9/23 (39%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
PY C C F S L H K
Sbjct: 12 PYGCNECGKNFGRHSHLIEHLKR 34
Score = 27.1 bits (61), Expect = 3.1
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y C CGK F R + L H
Sbjct: 13 YGCNECGKNFGRHSHLIEH 31
Score = 26.3 bits (59), Expect = 5.2
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 468 FVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTA 504
+ C C K+F +L HL+ H + ++
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFRE----KSSGPSS 45
Score = 26.3 bits (59), Expect = 6.8
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 256 EKKFVCQYCNKEFPFQGYLNKHMKTH 281
E+ + C C K F +L +H+K H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 7e-07
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKPYKC +CG F N L H+
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHR 32
Score = 44.0 bits (105), Expect = 3e-06
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C C K FT ++L RH +HT EKP
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.004
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +C CGK F +L RH H E+ G
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG 46
Score = 29.0 bits (66), Expect = 0.65
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +C CGK F +L RH H E+
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKPS 41
Score = 27.5 bits (62), Expect = 2.0
Identities = 10/36 (27%), Positives = 12/36 (33%), Gaps = 4/36 (11%)
Query: 486 HLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PYKC C F S L HR
Sbjct: 3 SGSSGTGE----KPYKCNECGKVFTQNSHLARHRGI 34
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 7e-07
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK C C K F + + L H R H ++K
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 42.9 bits (102), Expect = 7e-06
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
T EKP KC +CG AF L H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
Score = 37.9 bits (89), Expect = 4e-04
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +C CGK F K L H RTH ++ G
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG 46
Score = 32.5 bits (75), Expect = 0.032
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +C CGK F K L H RTH ++
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDKHS 41
Score = 31.0 bits (71), Expect = 0.14
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
P KCT C AF KS L +H++T
Sbjct: 12 PCKCTECGKAFCWKSQLIMHQRT 34
Score = 28.3 bits (64), Expect = 1.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
CT CGK F K++L +H
Sbjct: 13 CKCTECGKAFCWKSQLIMH 31
Score = 26.4 bits (59), Expect = 5.5
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ KC CG F + L +H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
Score = 26.0 bits (58), Expect = 7.7
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 253 HMLEKKFVCQYCNKEFPFQGYLNKHMKTH 281
EK C C K F ++ L H +TH
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 45.7 bits (108), Expect = 8e-07
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 842 KHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDC 882
+ K CE C K F +L RH H+ EKPY
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 35.7 bits (82), Expect = 0.003
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 688 RCEVCGKTFGLKEYLRRHMRTHRVERKYKC 717
CE+CGK F +L RH +H E+ Y
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPYSS 43
Score = 33.4 bits (76), Expect = 0.019
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 137 RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
CE+CGK F +L RH +H E+ Y
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPY 41
Score = 31.8 bits (72), Expect = 0.078
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 461 KHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNA 507
+ ++ C+ C K F + +L RH HS + PY +
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGE----KPYSSGPSSG 48
Score = 29.5 bits (66), Expect = 0.42
Identities = 9/30 (30%), Positives = 10/30 (33%)
Query: 869 RVHTNEKPYKCKDCGAAFNHNVSLKNHKNS 898
K C+ CG F L HK S
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLS 34
Score = 28.0 bits (62), Expect = 1.6
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 9/51 (17%)
Query: 252 KHMLEKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGHVTYTCKQCN 302
K+ C+ C K F +LN+H +H+ G Y+ +
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHS---------GEKPYSSGPSS 47
Score = 26.1 bits (57), Expect = 9.5
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCN 474
C CGK F LN H L H E+ + +
Sbjct: 13 VACEICGKIFRDVYHLNRHK----LSHSGEKPYSSGPSS 47
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 8e-07
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK YIC C K F ++L RH R+HT EKP
Sbjct: 7 GTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 1e-06
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKPY C +CG +F L H+
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHR 32
Score = 36.3 bits (85), Expect = 0.001
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P C CGK+F K +L RH R H E+ G
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSSG 46
Score = 31.7 bits (73), Expect = 0.070
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P C CGK+F K +L RH R H E+
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKPS 41
Score = 28.6 bits (65), Expect = 0.89
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
PY C C +F KS LN HR+
Sbjct: 12 PYICNECGKSFIQKSHLNRHRRI 34
Score = 27.1 bits (61), Expect = 3.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y C CGK F +K+ LN H
Sbjct: 13 YICNECGKSFIQKSHLNRH 31
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 8e-07
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C C K F+ +YL HMR H+ EKP
Sbjct: 7 GAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 45.6 bits (109), Expect = 8e-07
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
EKPY C +CG AF+ L H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHM 32
Score = 39.8 bits (94), Expect = 1e-04
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P C CGK F K YL HMRTH E+ G
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG 46
Score = 32.5 bits (75), Expect = 0.031
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P C CGK F K YL HMRTH E+
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKPS 41
Score = 31.8 bits (73), Expect = 0.063
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PY C+ C AF++KS L +H +T
Sbjct: 2 SSGSSGAGE----KPYGCSECGKAFSSKSYLIIHMRT 34
Score = 27.5 bits (62), Expect = 2.4
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ Y C CG F+ L +H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
Score = 27.1 bits (61), Expect = 2.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y C+ CGK F+ K+ L IH
Sbjct: 13 YGCSECGKAFSSKSYLIIH 31
Score = 26.0 bits (58), Expect = 7.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 253 HMLEKKFVCQYCNKEFPFQGYLNKHMKTH 281
EK + C C K F + YL HM+TH
Sbjct: 7 GAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 8e-07
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
T E+ Y+C +CG AF +L H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 43.3 bits (103), Expect = 5e-06
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
E+ Y C C K F + L H R+H EKP
Sbjct: 7 GTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 36.3 bits (85), Expect = 0.001
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
ER C CGK F K L H R HR E+ G
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSSG 46
Score = 31.0 bits (71), Expect = 0.12
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
ER C CGK F K L H R HR E+
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKPS 41
Score = 29.4 bits (67), Expect = 0.49
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 486 HLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + Y+C+ C AF KS L++H++
Sbjct: 3 SGSSGTGE----RHYECSECGKAFIQKSTLSMHQRI 34
Score = 27.1 bits (61), Expect = 3.3
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y+C+ CGK F +K+ L++H
Sbjct: 13 YECSECGKAFIQKSTLSMH 31
Score = 25.9 bits (58), Expect = 8.9
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 705 HMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ ER Y+C CG F +L +H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH 31
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 45.5 bits (109), Expect = 8e-07
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKPY+C +C AFN +L H+
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQ 32
Score = 44.4 bits (106), Expect = 2e-06
Identities = 14/43 (32%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 838 GIHLK-HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
G EK Y C C K F + L H R HT E
Sbjct: 1 GSSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 36.3 bits (85), Expect = 0.002
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKC 717
E+P C C K F K L H RTH E
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 31.7 bits (73), Expect = 0.069
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P C C K F K L H RTH E
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGESGP 41
Score = 31.3 bits (72), Expect = 0.093
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 486 HLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + PY+C C AFNTKS L VH++T
Sbjct: 3 SGSSGTGE----KPYECNECQKAFNTKSNLMVHQRT 34
Score = 27.1 bits (61), Expect = 3.2
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y+C C K F K+ L +H
Sbjct: 13 YECNECQKAFNTKSNLMVH 31
Score = 26.3 bits (59), Expect = 5.5
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 705 HMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ Y+C C FN +L VH
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVH 31
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 9e-07
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
T E PY+C +CG AF+ L +H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISH 31
Score = 42.5 bits (101), Expect = 1e-05
Identities = 13/37 (35%), Positives = 14/37 (37%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
E Y C C K F+ L H R H EKP
Sbjct: 7 GTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 36.3 bits (85), Expect = 0.002
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E P C CGK F K L H RTH E+ G
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG 46
Score = 30.6 bits (70), Expect = 0.18
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E P C CGK F K L H RTH E+
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKPS 41
Score = 28.6 bits (65), Expect = 0.96
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ + +PY+C C AF+ K L H++T
Sbjct: 2 SSGSSGTGE----NPYECHECGKAFSRKYQLISHQRT 34
Score = 27.1 bits (61), Expect = 3.4
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 425 QHQKAAHSGVC-YDCTFCGKGFTRKAELNIH 454
+ +G Y+C CGK F+RK +L H
Sbjct: 2 SSGSS-GTGENPYECHECGKAFSRKYQLISH 31
Score = 26.3 bits (59), Expect = 6.0
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E Y+C CG F+ L H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISH 31
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 9e-07
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T EKPYKC +CG F N L H+
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHR 32
Score = 44.0 bits (105), Expect = 3e-06
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C C K FT ++L RH RVHT KP
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 35.2 bits (82), Expect = 0.005
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P +C CGK F +L RH R H + G
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG 46
Score = 29.0 bits (66), Expect = 0.72
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P +C CGK F +L RH R H +
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKPS 41
Score = 27.9 bits (63), Expect = 1.9
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
PYKC C F S L HR+
Sbjct: 12 PYKCNECGKVFTQNSHLARHRRV 34
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 45.3 bits (108), Expect = 1e-06
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
T+ K Y C +CG AF L H+
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQ 32
Score = 36.0 bits (84), Expect = 0.002
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
K+Y C C K FT +L RH ++HT +
Sbjct: 7 GTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 30.6 bits (70), Expect = 0.17
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKC 717
+ C CGK F +L RH + H +
Sbjct: 10 SKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 29.1 bits (66), Expect = 0.55
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTH 158
+ C CGK F +L RH + H
Sbjct: 10 SKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 26.8 bits (60), Expect = 3.5
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
Y C C AF L H+K
Sbjct: 12 SYNCNECGKAFTRIFHLTRHQKI 34
Score = 26.8 bits (60), Expect = 4.0
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 425 QHQKAAHSGV-CYDCTFCGKGFTRKAELNIH 454
+ + Y+C CGK FTR L H
Sbjct: 2 SSGSS-GTDSKSYNCNECGKAFTRIFHLTRH 31
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 45.2 bits (108), Expect = 1e-06
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
K++ C C + FT ++L +H R+HT EKP
Sbjct: 7 GSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 5e-06
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
++ K ++C +CG F L H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 35.6 bits (83), Expect = 0.003
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
+ +C CG+ F LK +L +H R H E+ G
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG 46
Score = 31.7 bits (73), Expect = 0.062
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTH 158
+ +C CG+ F LK +L +H R H
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 29.8 bits (68), Expect = 0.34
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
+ C CG+GFT K+ LN H
Sbjct: 13 HQCHECGRGFTLKSHLNQH 31
Score = 29.1 bits (66), Expect = 0.56
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
++C C F KS LN H++
Sbjct: 12 SHQCHECGRGFTLKSHLNQHQRI 34
Score = 26.4 bits (59), Expect = 5.5
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 253 HMLEKKFVCQYCNKEFPFQGYLNKHMKTH 281
K C C + F + +LN+H + H
Sbjct: 7 GSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 26.4 bits (59), Expect = 6.5
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKC-VCGDGFNFNVSLKVH 732
+ + ++C CG GF L H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 45.2 bits (108), Expect = 1e-06
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
T +KP++C CG +F +L H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 44.5 bits (106), Expect = 2e-06
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 838 GIHLK-HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
G +K + C +C K F L H R+HT EK
Sbjct: 1 GSSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 34.4 bits (80), Expect = 0.007
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKC 717
++P C CGK+F K L H R H E+
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 29.8 bits (68), Expect = 0.32
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
++P C CGK+F K L H R H E+
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEKSG 41
Score = 28.7 bits (65), Expect = 0.81
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
P++CT C +F K L H++
Sbjct: 12 PFECTHCGKSFRAKGNLVTHQRI 34
Score = 27.5 bits (62), Expect = 2.1
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
++CT CGK F K L H
Sbjct: 13 FECTHCGKSFRAKGNLVTH 31
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 45.3 bits (108), Expect = 1e-06
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
+ EK + C +CG F + +L+ H+
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQ 32
Score = 43.7 bits (104), Expect = 3e-06
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK++ C+ C K F + + LR H RVH EK
Sbjct: 7 GSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 34.5 bits (80), Expect = 0.007
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+ C+ CGK F LR H R H E+ G
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG 46
Score = 30.6 bits (70), Expect = 0.17
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+ C+ CGK F LR H R H E+
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGEKCS 41
Score = 29.5 bits (67), Expect = 0.46
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
+ C C F SAL +H++
Sbjct: 12 SHTCDECGKNFCYISALRIHQRV 34
Score = 28.3 bits (64), Expect = 1.1
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 705 HMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ E+ + C CG F + +L++H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH 31
Score = 26.8 bits (60), Expect = 4.3
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
+ C CGK F + L IH
Sbjct: 13 HTCDECGKNFCYISALRIH 31
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 44.8 bits (107), Expect = 2e-06
Identities = 9/30 (30%), Positives = 10/30 (33%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
T KPY C C F+ L H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 44.4 bits (106), Expect = 2e-06
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
K Y C C K F+ + L H R HT KP
Sbjct: 7 GTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 38.7 bits (91), Expect = 2e-04
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
+P C C KTF LK L H R+H + G
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG 46
Score = 31.3 bits (72), Expect = 0.11
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
+P C C KTF LK L H R+H +
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPS 41
Score = 31.0 bits (71), Expect = 0.12
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ PY C+ C F+ KS L VH+++
Sbjct: 2 SSGSSGTGV----KPYGCSQCAKTFSLKSQLIVHQRS 34
Score = 27.5 bits (62), Expect = 2.1
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 704 RHMRTHRVERKYKCV-CGDGFNFNVSLKVH 732
+ + Y C C F+ L VH
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 27.5 bits (62), Expect = 2.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y C+ C K F+ K++L +H
Sbjct: 13 YGCSQCAKTFSLKSQLIVH 31
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 44.2 bits (105), Expect = 3e-06
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 838 GIHL-KHQLEKTYICEY--CHKEFTFYNYLRRHMRVHTNEKPYKC 879
G EK + C + C F+ + L RH R H+ KP
Sbjct: 1 GSSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 35.0 bits (81), Expect = 0.005
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 685 ERP-RC--EVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
E+P C CG F + L RH R+H + G
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG 48
Score = 30.3 bits (69), Expect = 0.20
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 134 ERP-RC--EVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P C CG F + L RH R+H +
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPS 43
Score = 29.2 bits (66), Expect = 0.57
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 6/38 (15%)
Query: 436 YDCTF--CGKGFTRKAELNIHIKAVHLKHQLEQRFVCQ 471
+ CT+ CG F+R EL+ H + H +
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRR----SHSGVKPSGPS 46
Score = 28.8 bits (65), Expect = 0.80
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 461 KHQLEQRFVCQY--CNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTA 504
E+ F C + C F L RH R HS P ++
Sbjct: 6 SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGV----KPSGPSS 47
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 46.0 bits (108), Expect = 3e-06
Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 7/103 (6%)
Query: 807 HKKHSHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRR 866
+ + + C C K + E H + +C YC F +
Sbjct: 7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR------NAAVCPYCSLRFFSPELKQE 60
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNHKNSSCPKRDMTATP 909
H K C +C F + S+ H+ + +M T
Sbjct: 61 H-ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTS 102
Score = 44.9 bits (105), Expect = 9e-06
Identities = 16/102 (15%), Positives = 24/102 (23%), Gaps = 14/102 (13%)
Query: 91 NLAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEY 150
+ + C C E +H + C C F E
Sbjct: 4 GSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR------NAAVCPYCSLRFFSPEL 57
Query: 151 LRRHMRTHRVERKYNGFESAALCFICGFYHKHKKMIYRHIKE 192
+ H ++ C C K I+RH E
Sbjct: 58 KQEHESKCEYKK--------LTCLECMRTFKSSFSIWRHQVE 91
Score = 42.2 bits (98), Expect = 6e-05
Identities = 15/95 (15%), Positives = 24/95 (25%), Gaps = 8/95 (8%)
Query: 642 NLAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEY 701
+ + C C E +H + C C F E
Sbjct: 4 GSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR------NAAVCPYCSLRFFSPEL 57
Query: 702 LRRHMRTHRVERKYKC-VCGDGFNFNVSLKVHMAK 735
+ H +K C C F + S+ H +
Sbjct: 58 KQEHESKCE-YKKLTCLECMRTFKSSFSIWRHQVE 91
Score = 41.0 bits (95), Expect = 2e-04
Identities = 16/100 (16%), Positives = 26/100 (26%), Gaps = 11/100 (11%)
Query: 425 QHQKAAHSGVCYDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLK 484
+ Y C C + E H + VC YC+ F + +
Sbjct: 6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR------NAAVCPYCSLRFFSPELKQ 59
Query: 485 RHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKTCPN 524
H C C F + ++ H+ N
Sbjct: 60 EHESKCEY-----KKLTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 38.3 bits (88), Expect = 0.001
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 12/84 (14%)
Query: 47 CFVCAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVVNLA---EHKLCHEPPR 103
C +C ++ H + R VC CS R + EH+ E +
Sbjct: 19 CRLCNAKLSSLLEQGSHER---------LCRNAAVCPYCSLRFFSPELKQEHESKCEYKK 69
Query: 104 FTCEYCVKPFRRTQELRNHVKAVH 127
TC C++ F+ + + H VH
Sbjct: 70 LTCLECMRTFKSSFSIWRHQVEVH 93
Score = 38.3 bits (88), Expect = 0.001
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 12/84 (14%)
Query: 598 CFVCAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVVNLA---EHKLCHEPPR 654
C +C ++ H + R VC CS R + EH+ E +
Sbjct: 19 CRLCNAKLSSLLEQGSHER---------LCRNAAVCPYCSLRFFSPELKQEHESKCEYKK 69
Query: 655 FTCEYCVKPFRRTQELRNHVKAVH 678
TC C++ F+ + + H VH
Sbjct: 70 LTCLECMRTFKSSFSIWRHQVEVH 93
Score = 34.9 bits (79), Expect = 0.021
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 6/67 (8%)
Query: 456 KAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSAL 515
+ + ++ + C+ CN + H R+ N C C+ F +
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA------AVCPYCSLRFFSPELK 58
Query: 516 NVHRKTC 522
H C
Sbjct: 59 QEHESKC 65
Score = 32.2 bits (72), Expect = 0.19
Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 197 KKQEKKVCDICSAE---VIHLGTHQKVAHSGVTYNCKFCSMKFTRVGQMNIHIKTVHLKH 253
+ +E C +C+A+ ++ G+H+++ + C +CS++F + +K H
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLCRN--AAVCPYCSLRFF-----SPELKQEHESK 64
Query: 254 MLEKKFVCQYCNKEFPFQGYLNKHMKT-HNHHGNGP 288
KK C C + F + +H HN + P
Sbjct: 65 CEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAP 100
Score = 31.8 bits (71), Expect = 0.27
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 11/96 (11%)
Query: 406 KKREMKICDICCAE---VLHLQQHQKAAHSGVCYDCTFCGKGFTRKAELNIHIKAVHLKH 462
+ +E+ C +C A+ +L H++ + C +C F H
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQ-----EHESK 64
Query: 463 QLEQRFVCQYCNKDFPFMKYLKRH-LRVHSNDVQVP 497
++ C C + F + RH + VH+ + P
Sbjct: 65 CEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAP 100
Score = 30.6 bits (68), Expect = 0.65
Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 10/91 (10%)
Query: 760 CYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKH--SHSGQYH 817
C C + +H R+ +C CS + ++H +
Sbjct: 19 CRLCNAKLSSLLEQGSHERLCR--------NAAVCPYCSLRFFSPELKQEHESKCEYKKL 70
Query: 818 VCPHCGKKFTRKAELQLHIKGIHLKHQLEKT 848
C C + F + H +H ++ + T
Sbjct: 71 TCLECMRTFKSSFSIWRHQVEVHNQNNMAPT 101
Score = 29.9 bits (66), Expect = 1.1
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 11/60 (18%)
Query: 256 EKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTFTNKHLFRNHK 315
++ + C+ CN + H + + C C+L F + L + H+
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCRNA-----------AVCPYCSLRFFSPELKQEHE 62
Score = 27.9 bits (61), Expect = 5.5
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 12/101 (11%)
Query: 490 HSNDVQVPHPYKCTACNAAFNTKSALNVHRKTCPNLELLNRDLLPNQTGTDDEKKLEQKE 549
++ V+ Y+C CNA ++ H + C N + P + +L+Q+
Sbjct: 7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR-----NAAVCPYCSLRFFSPELKQEH 61
Query: 550 MAKKPTVTEPAGEEAFTCRICQAVFDKYVRLCGHLRTVHNE 590
+K + TC C F + H VHN+
Sbjct: 62 ESKC-------EYKKLTCLECMRTFKSSFSIWRHQVEVHNQ 95
Score = 27.6 bits (60), Expect = 7.3
Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 7/85 (8%)
Query: 382 CYYCGYFNGHKKMIYLHIKDHVAPKKREMKICDICCAE--VLHLQQHQKAAHSGVCYDCT 439
C C H + R +C C L+Q ++ C
Sbjct: 19 CRLCNAKLSSLLEQGSHERLC-----RNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCL 73
Query: 440 FCGKGFTRKAELNIHIKAVHLKHQL 464
C + F + H VH ++ +
Sbjct: 74 ECMRTFKSSFSIWRHQVEVHNQNNM 98
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 43.3 bits (103), Expect = 5e-06
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
E Y C C K F+ + L H + H+ +
Sbjct: 7 GTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 42.1 bits (100), Expect = 1e-05
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
T E PY+C +CG F+ L +H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSH 31
Score = 35.6 bits (83), Expect = 0.003
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKC 717
E P C CGK F K+ L H +TH +
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 32.5 bits (75), Expect = 0.041
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E P C CGK F K+ L H +TH +
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQSGP 41
Score = 30.2 bits (69), Expect = 0.25
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
PY+C C F+ K L H+KT
Sbjct: 12 PYECCECGKVFSRKDQLVSHQKT 34
Score = 28.2 bits (64), Expect = 1.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y+C CGK F+RK +L H
Sbjct: 13 YECCECGKVFSRKDQLVSH 31
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 42.9 bits (102), Expect = 6e-06
Identities = 11/37 (29%), Positives = 12/37 (32%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
E Y C C K F + L H R H E
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 41.0 bits (97), Expect = 3e-05
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 869 RVHTNEKPYKCKDCGAAFNHNVSLKNH 895
+ E PY+C +CG AFN L +H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISH 29
Score = 36.0 bits (84), Expect = 0.002
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKC 717
E P C CGK F K+ L H RTH E
Sbjct: 8 ENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 31.3 bits (72), Expect = 0.091
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E P C CGK F K+ L H RTH E
Sbjct: 8 ENPYECSECGKAFNRKDQLISHQRTHAGESGP 39
Score = 29.4 bits (67), Expect = 0.44
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
PY+C+ C AFN K L H++T
Sbjct: 10 PYECSECGKAFNRKDQLISHQRT 32
Score = 27.5 bits (62), Expect = 2.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y+C+ CGK F RK +L H
Sbjct: 11 YECSECGKAFNRKDQLISH 29
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 1e-05
Identities = 71/548 (12%), Positives = 150/548 (27%), Gaps = 162/548 (29%)
Query: 409 EMKICDICCAEVLHLQQHQKAAHSGVCYDCTFCGKGFTRKAELNIHIKAVHLKHQLE--- 465
E ++L + + + C D K K E++ HI + K +
Sbjct: 10 ETGEHQYQYKDILSVFE-DAFVDNFDCKDVQDMPKSILSKEEID-HI--IMSKDAVSGTL 65
Query: 466 --------------QRFVCQYCNKDFPFM----------------KYLKRHLRVHSNDVQ 495
Q+FV + ++ F+ Y+++ R++ ND Q
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-NDNQ 124
Query: 496 VPHPYKCTACNAAFNTKSALNVHRKTCPNLELLNRDLLPNQTGTDDEKKLEQKE------ 549
V Y NV R P L+L R L +L +
Sbjct: 125 VFAKY---------------NVSRLQ-PYLKL--RQAL---------LELRPAKNVLIDG 157
Query: 550 MA---KKPTVTEPAGEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFA 606
+ K + C++ +F ++ L + + L + +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIF--WLNL-KNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 607 TRATLTLHIKQMHGGGQT------------------DYVREKEV-------CEI-CSARV 640
+R+ + +IK Q V+ + C+I + R
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 641 VNLAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCG------K 694
+ + + ++ + +K + P++ PR EV
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC--RPQDLPR-EVLTTNPRRLS 331
Query: 695 TFGLKEYLRRHMRTHRVERKYKCVCGDGFN--FNVSLKVHMAKCAFYLKSLEKEGESDHG 752
E +R + + +K V D SL V L+ E
Sbjct: 332 IIA--ESIRDGL--ATWDN-WKHVNCDKLTTIIESSLNV--------LEPAEYR------ 372
Query: 753 GYETSSLCYHCGYYSKNRSTLKNHVRVEHG------ENQAKRKEKKICDICSAEVVHLAI 806
+ S + + K + + ++ ++
Sbjct: 373 -----------KMF-DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN----KLHKYSL 416
Query: 807 HKKHSHSGQY--HVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFT---FY 861
+K + K + E LH + + + KT+ + + FY
Sbjct: 417 VEKQPKESTISIPSI-YLELKVKLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFY 474
Query: 862 NYLRRHMR 869
+++ H++
Sbjct: 475 SHIGHHLK 482
Score = 42.1 bits (98), Expect = 0.001
Identities = 67/543 (12%), Positives = 140/543 (25%), Gaps = 178/543 (32%)
Query: 72 QTDY----VREKEVCEICSARVVNLAEH--KLCHEPPRFTCEYCVKPFRRTQELRNHVKA 125
+ +Y K S E +L ++ F +Y V + +LR +
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA-KYNVSRLQPYLKLRQALL- 145
Query: 126 VHLTETPEERPRCEV-------CGKTFGLKEYLRRHMRTHRVERKYNG--F--------- 167
E RP V GKT+ + +++V+ K + F
Sbjct: 146 -------ELRPAKNVLIDGVLGSGKTWVALDVCL----SYKVQCKMDFKIFWLNLKNCNS 194
Query: 168 ESAALCFICGFYHKHKKM------IYRHIKEHIEPKKQEKKV---------C-----DIC 207
L + ++ +IK I + E + C ++
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 208 SAEVIHLGTHQKVAHSGVTYNCKFCSMKFTR--------VGQMNIHIKTVHLKHMLEK-- 257
+A+ + +CK + TR HI H L
Sbjct: 255 NAKAW----------NAFNLSCK--ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 258 ------KFV-----------CQYCN-----------KEFP--FQGYLNKHMKTHNHHGNG 287
K++ N ++ + + + +
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLT-TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT---- 357
Query: 288 PGGGGHVTYTCKQC--NLTFTN-KHLFRNHKLFEADEFFDGEVP-----LYESSSDKEDV 339
+ L + +F +F +P L K DV
Sbjct: 358 ---------IIESSLNVLEPAEYRKMFDRLSVFPPSA----HIPTILLSLIWFDVIKSDV 404
Query: 340 EEE-EEMEE----EVWQCR--------------HCPLKHRSHDLLLRHYTKEHGGYDW-- 378
++ + E ++ H ++ HY +D
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPKTFDSDD 463
Query: 379 ASVCYYCGYFNGHKKMIYLHIKDHVAPKKREMKICDICCAEVLHLQQH---QKAAHSGVC 435
Y YF Y HI H+ + ++ ++ L QK H
Sbjct: 464 LIPPYLDQYF-------YSHIGHHLKNIEHPERMTLF---RMVFLDFRFLEQKIRHDSTA 513
Query: 436 YDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRV--HSND 493
++ G +L + + +R V + F+ ++ +L +++
Sbjct: 514 WNA--SGSILNTLQQLKFYKPYICDNDPKYERLVNAILD----FLPKIEENLICSKYTDL 567
Query: 494 VQV 496
+++
Sbjct: 568 LRI 570
Score = 38.3 bits (88), Expect = 0.017
Identities = 84/595 (14%), Positives = 162/595 (27%), Gaps = 205/595 (34%)
Query: 5 LAYSVREEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHI 64
L ++ E R + Y+ ++N+ V AK +R L +
Sbjct: 94 LMSPIKTE---QRQPSMMTRMYIE---QRDRLYNDNQ-------VFAKYNVSRLQPYLKL 140
Query: 65 KQ---------------MHGGGQT----DYVREKEVCEICSARV--VNLAEHKLCHEPPR 103
+Q + G G+T D +V ++ +NL C+ P
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN---CNSP-- 195
Query: 104 FTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERK 163
E ++ Q+L + + T + ++ + ++ LRR +++ E
Sbjct: 196 ---ETVLEML---QKLLYQIDP-NWTSRSDHSSNIKL--RIHSIQAELRRLLKSKPYEN- 245
Query: 164 YNGFESAALCFICGFYHKHKKMIYRHI--KEHIEP-----K----KQEKKVCDICSAEVI 212
L ++ ++ + K + K+V D SA
Sbjct: 246 -------CL------------LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 213 HLGTHQKVAHSGVTYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCN------- 265
TH + H +T T ++ +K + + + V N
Sbjct: 287 ---THISLDHHSMT---------LTPDEVKSLLLKYLDCRPQDLPREVLT-TNPRRLSII 333
Query: 266 ----KEFP--FQGYLNKHMKTHNHHGNGPGGGGHVTYTCKQC--NLTFTN-KHLFRNHKL 316
++ + + + + + L + +F +
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTT-------------IIESSLNVLEPAEYRKMFDRLSV 380
Query: 317 FEADEFFDGEVP--LYESSSDKEDVEEEEEMEEEVWQCRHCPLKHRSHDLLLRHYTKEHG 374
F +P L + + + L S L+ + KE
Sbjct: 381 FPPSA----HIPTILLSLIWFDVIKSDVMVVVNK--------LHKYS--LVEKQP-KE-- 423
Query: 375 GYDWASVCYYCGYFNGHKKMIYLHIKDHVAPKKREMKICDICCAEVLHLQQHQKAAHSGV 434
S IYL +K + + + H+
Sbjct: 424 -----STISI------P--SIYLELKVKL-ENEYAL---------------HRSIVD--- 451
Query: 435 CYD--CTFCGKGFTRKAELN---IHIKAVHLK----HQLEQRFVCQYCNKDFPFMKYLKR 485
Y+ TF HI HLK + F + DF F L++
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHI-GHHLKNIEHPERMTLFRMVFL--DFRF---LEQ 505
Query: 486 HLRVHSNDVQVPHPYKCTACNAA---FNTKSALNVHRK----TCPNLELLNRDLL 533
+R + TA NA+ NT L ++ P E L +L
Sbjct: 506 KIR-----------HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Score = 37.1 bits (85), Expect = 0.030
Identities = 92/648 (14%), Positives = 182/648 (28%), Gaps = 152/648 (23%)
Query: 237 TRVGQMNIHIKTVHLKHMLE---KKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGH 293
G+ K + L + F C+ ++ P + L+K H G
Sbjct: 9 FETGEHQYQYKDI-LSVFEDAFVDNFDCKDV-QDMP-KSILSKEEIDHIIMSKDAVSGTL 65
Query: 294 VTYTC---KQCNLT--FTNKHLFRNHK-LFEA--DEFFDGEVP--LYESSSDK--EDVEE 341
+ KQ + F + L N+K L E + +Y D+ D +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 342 EEEM----EEEVWQCRHCPLKHRSHDLLLRHYTKEHG----GYDW--ASVC----YYCGY 387
+ + + R L+ R +L G G W VC C
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLI-----DGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 388 FNGHKKMIYLHIKDHVAPKKREMKICDICCAEVLHLQQHQKAAHSGVCY--DCTFCGKG- 444
+ +L++K+ C + L+ QK + Y D + +
Sbjct: 181 DFK---IFWLNLKN--------------CNSPETVLEMLQK-----LLYQIDPNWTSRSD 218
Query: 445 FTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTA 504
+ +L IH L+ L+ + Y + L V +VQ +
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSK---PY-----------ENCLLV-LLNVQNAKAWN--- 260
Query: 505 CNAAFNTKS-------------ALNVHRKTCPNLELLNRDLLPNQTGTDDEKKLEQK--- 548
AFN L+ T +L+ + L P++ + K L+ +
Sbjct: 261 ---AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 549 --EMAKK--PTVTEPAGEEAFTCRICQAVFDKYVRL-CGHLRT-----VHNEKPEKSNLC 598
P E R A +D + + C L T ++ +P +
Sbjct: 318 LPREVLTTNPRRLSIIAES---IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 599 FVCAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVVNLAEHKLCHEPPRFTCE 658
F VF A + + + V ++ +V +P T
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK-------QPKESTIS 427
Query: 659 YCVKP--FRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLK-------EYLRRHMRTH 709
P + + + A+H + ++ H++
Sbjct: 428 I---PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 710 RVERKYKCVCGDGF-----NFN-VSLKVHMAKCAFYLKSLEKEGESDHGGYETSSLCYHC 763
+ F +F + K+ A+ Y+ +C +
Sbjct: 485 EHPERM-----TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK-PYICDND 538
Query: 764 GYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHS 811
Y + + + + + + EN K D+ + +A+ +
Sbjct: 539 PKYERLVNAILDFLP-KIEENLICSKY---TDL-----LRIALMAEDE 577
Score = 34.8 bits (79), Expect = 0.18
Identities = 57/465 (12%), Positives = 122/465 (26%), Gaps = 144/465 (30%)
Query: 5 LAYSV-REEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLH 63
+A V C++ +F ++ L + + L + + +R+ + +
Sbjct: 166 VALDVCLSYKVQCKMDFKIF--WLNL-KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 64 IKQMHGGGQT------------------DYVREKEV-------CEI-CSARVVNLAEHKL 97
IK Q V+ + C+I + R + +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 98 CHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCG------KTFGLKEYL 151
+ ++ + +K + P++ PR EV E +
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--PQDLPR-EVLTTNPRRLSIIA--ESI 337
Query: 152 RRHMRTHRVERKYNGFESAALCFICGFYHKHKKMIYRHIKEHIEPKKQEK---------- 201
R + T + N K +I + +EP + K
Sbjct: 338 RDGLATWDNWKHVN-------------CDKLTTIIESSL-NVLEPAEYRKMFDRLSVFPP 383
Query: 202 ------KV-----CDICSAEVIHLGTHQKVAHSGVTYNCKFCSMKFTRVGQMNIHIKT-V 249
+ D+ ++V V + Y+ K + + +I+++ V
Sbjct: 384 SAHIPTILLSLIWFDVIKSDV------MVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 250 HLKHM--LEKKFVCQY------CNKEFP-------FQGYLNKHMKTHN------------ 282
L++ L + V Y + + F ++ H+K
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Query: 283 -----------HHGNGPGGGGHVTYTCKQCNLTFTNKHLFRNHKLFEADEFFDGEVPLYE 331
H G + T +Q L F ++ N P YE
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQ--LKFYKPYICDND-------------PKYE 542
Query: 332 SSSDKEDVEEEEEMEEEVWQCRHCPLKHRSHDLLLRHYTKEHGGY 376
+ + + + + + DLL E
Sbjct: 543 --------RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 41.5 bits (98), Expect = 2e-05
Identities = 11/36 (30%), Positives = 13/36 (36%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYK 878
E Y+C C K FT L H R + P
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 39.6 bits (93), Expect = 1e-04
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
E PY C CG +F SL H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVH 30
Score = 33.8 bits (78), Expect = 0.012
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYNG 166
E P C CGK+F + L H R+ +G
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG 42
Score = 32.3 bits (74), Expect = 0.048
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYK 716
E P C CGK+F + L H R+
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 29.6 bits (67), Expect = 0.39
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y C CGK FT++ L +H
Sbjct: 12 YLCGQCGKSFTQRGSLAVH 30
Score = 28.8 bits (65), Expect = 0.67
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 499 PYKCTACNAAFNTKSALNVHRKTC 522
PY C C +F + +L VH+++C
Sbjct: 11 PYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 27.6 bits (62), Expect = 1.9
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 253 HMLEKKFVCQYCNKEFPFQGYLNKHMKTHN 282
E ++C C K F +G L H ++ +
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCS 35
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 41.0 bits (97), Expect = 3e-05
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 869 RVHTNEKPYKCKDCGAAFNHNVSLKNH 895
+ ++ Y+C++CG +F SL H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLH 29
Score = 39.5 bits (93), Expect = 1e-04
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 846 EKTYICEYCHKEFTFYNYLRRHMRVHTNEKPY 877
++ Y C+ C K F L H R+HT P
Sbjct: 8 QRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 32.5 bits (75), Expect = 0.030
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYNG 166
+R C+ CGK+F K L H R H +G
Sbjct: 8 QRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG 41
Score = 30.2 bits (69), Expect = 0.24
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 715
+R C+ CGK+F K L H R H
Sbjct: 8 QRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 29.1 bits (66), Expect = 0.48
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 499 PYKCTACNAAFNTKSALNVH 518
Y+C C +F K +L +H
Sbjct: 10 VYECQECGKSFRQKGSLTLH 29
Score = 28.7 bits (65), Expect = 0.77
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 436 YDCTFCGKGFTRKAELNIH 454
Y+C CGK F +K L +H
Sbjct: 11 YECQECGKSFRQKGSLTLH 29
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 40.4 bits (95), Expect = 5e-05
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 869 RVHTNEKPYKCKDCGAAFNHNVSLKNH 895
+ EKPY C +C F+ N L H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQH 29
Score = 36.1 bits (84), Expect = 0.001
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKC 879
EK Y C C + F+ N L +H ++HT +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 34.2 bits (79), Expect = 0.009
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKYKC 717
E+P C C +TF L +H + H V+
Sbjct: 8 EKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 32.3 bits (74), Expect = 0.044
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVERKY 164
E+P C C +TF L +H + H V+
Sbjct: 8 EKPYSCAECKETFSDNNRLVQHQKMHTVKSGP 39
Score = 27.7 bits (62), Expect = 1.9
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
PY C C F+ + L H+K
Sbjct: 10 PYSCAECKETFSDNNRLVQHQKM 32
Score = 25.7 bits (57), Expect = 8.8
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 253 HMLEKKFVCQYCNKEFPFQGYLNKHMKTH 281
EK + C C + F L +H K H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 25.7 bits (57), Expect = 9.8
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 436 YDCTFCGKGFTRKAELNIHIK 456
Y C C + F+ L H K
Sbjct: 11 YSCAECKETFSDNNRLVQHQK 31
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 41.1 bits (95), Expect = 3e-04
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 840 HLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
L + ++C C F+ L++H+R E C C F S +H
Sbjct: 66 LLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDH 119
Score = 39.1 bits (90), Expect = 0.001
Identities = 22/109 (20%), Positives = 34/109 (31%), Gaps = 9/109 (8%)
Query: 763 CGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDI--CSAEVVHLAIHKKHSHSGQYHVCP 820
+ + H + + K + E +L Q+ VCP
Sbjct: 20 IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQF-VCP 78
Query: 821 HCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMR 869
C F+ L+ HI E T +C C KEFT + H+
Sbjct: 79 LCLMPFSSSVSLKQHI------RYTEHTKVCPVCKKEFTSTDSALDHVC 121
Score = 37.6 bits (86), Expect = 0.004
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 643 LAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYL 702
L +F C C+ PF + L+ H++ E C VC K F +
Sbjct: 63 LYRLLASKAISQFVCPLCLMPFSSSVSLKQHIR------YTEHTKVCPVCKKEFTSTDSA 116
Query: 703 RRHMRTH 709
H+
Sbjct: 117 LDHVCKK 123
Score = 36.1 bits (82), Expect = 0.015
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 459 HLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKSALNVH 518
L + +FVC C F LK+H+R H C C F + + H
Sbjct: 66 LLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE------HTKVCPVCKKEFTSTDSALDH 119
Score = 36.1 bits (82), Expect = 0.016
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 549 EMAKKPTVTEPAGEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATR 608
E + + F C +C F V L H+R + K C VC K F +
Sbjct: 59 ESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV-----CPVCKKEFTST 113
Query: 609 ATLTLHIKQMHGG 621
+ H+ + H
Sbjct: 114 DSALDHVCKKHNI 126
Score = 35.7 bits (81), Expect = 0.016
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 678 HLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYKC-VCGDGFNFNVSLKVHMAK 735
L + C +C F L++H+R E C VC F S H+ K
Sbjct: 66 LLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCK 122
Score = 35.3 bits (80), Expect = 0.027
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 14 FTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGG 70
F C +C F V L H+R + K C VC K F + + H+ + H
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYTEHTKV-----CPVCKKEFTSTDSALDHVCKKHNI 126
Score = 33.8 bits (76), Expect = 0.097
Identities = 23/98 (23%), Positives = 31/98 (31%), Gaps = 5/98 (5%)
Query: 584 LRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICS---ARV 640
L+ H PE+ L K L L + VC +C +
Sbjct: 29 LKRYHQLTPEQKRLIRAIVKTLIHNPQL-LDESSYLYRLLASKAISQFVCPLCLMPFSSS 87
Query: 641 VNLAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVH 678
V+L +H E C C K F T +HV H
Sbjct: 88 VSLKQHIRYTEHT-KVCPVCKKEFTSTDSALDHVCKKH 124
Score = 32.6 bits (73), Expect = 0.22
Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 6/68 (8%)
Query: 425 QHQKAAHSGVCYDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLK 484
A+ + + C C F+ L HI E VC C K+F
Sbjct: 64 YRLLASKAISQFVCPLCLMPFSSSVSLKQHI------RYTEHTKVCPVCKKEFTSTDSAL 117
Query: 485 RHLRVHSN 492
H+ N
Sbjct: 118 DHVCKKHN 125
Score = 32.2 bits (72), Expect = 0.29
Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 11/65 (16%)
Query: 250 HLKHMLEKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTFTNKH 309
L +FVC C F L +H++ H T C C FT+
Sbjct: 66 LLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEH-----------TKVCPVCKKEFTSTD 114
Query: 310 LFRNH 314
+H
Sbjct: 115 SALDH 119
Score = 31.8 bits (71), Expect = 0.37
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 7/67 (10%)
Query: 217 HQKVAHSGVTYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNK 276
+ + + C C M F+ + HI+ E VC C KEF
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT------EHTKVCPVCKKEFTSTDSALD 118
Query: 277 HM-KTHN 282
H+ K HN
Sbjct: 119 HVCKKHN 125
Score = 31.4 bits (70), Expect = 0.48
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 786 AKRKEKKICDICSAEVVHLAIHKKHSHSGQY-HVCPHCGKKFTRKAELQLHIKGIH 840
+K + +C +C K+H ++ VCP C K+FT H+ H
Sbjct: 69 SKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDHVCKKH 124
Score = 30.7 bits (68), Expect = 0.89
Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 9/67 (13%)
Query: 127 HLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYNGFESAALCFICGFYHKHKKMI 186
L + C +C F L++H+R + C +C
Sbjct: 66 LLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV---------CPVCKKEFTSTDSA 116
Query: 187 YRHIKEH 193
H+ +
Sbjct: 117 LDHVCKK 123
Score = 29.9 bits (66), Expect = 1.8
Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 2/81 (2%)
Query: 817 HVCPH--CGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNE 874
++ H T + + H K + + + + +
Sbjct: 13 YLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAI 72
Query: 875 KPYKCKDCGAAFNHNVSLKNH 895
+ C C F+ +VSLK H
Sbjct: 73 SQFVCPLCLMPFSSSVSLKQH 93
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 39.8 bits (92), Expect = 4e-04
Identities = 15/69 (21%), Positives = 24/69 (34%)
Query: 454 HIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHPYKCTACNAAFNTKS 513
H ++E + C+YC P + H+ +V + Y C CN
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 514 ALNVHRKTC 522
AL+ H
Sbjct: 65 ALSEHNLKY 73
Score = 38.2 bits (88), Expect = 0.001
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 807 HKKHSHSGQYHVCPHCGKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRR 866
+ G Y C +C + H+ H L +Y+C C+ Y+ L
Sbjct: 10 QQNKKVEGGY-ECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 867 H-MRVHTNEKPYKCK 880
H ++ H E+ +K
Sbjct: 69 HNLKYHPGEENFKLT 83
Score = 37.8 bits (87), Expect = 0.002
Identities = 15/69 (21%), Positives = 28/69 (40%)
Query: 213 HLGTHQKVAHSGVTYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQG 272
H +Q+ Y CK+C+ + + H+ + H +L +VC CN
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 273 YLNKHMKTH 281
L++H +
Sbjct: 65 ALSEHNLKY 73
Score = 32.4 bits (73), Expect = 0.16
Identities = 14/65 (21%), Positives = 21/65 (32%)
Query: 422 HLQQHQKAAHSGVCYDCTFCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMK 481
H +Q+ Y+C +C H+ + H L +VC CN
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 482 YLKRH 486
L H
Sbjct: 65 ALSEH 69
Score = 31.7 bits (71), Expect = 0.30
Identities = 21/98 (21%), Positives = 29/98 (29%), Gaps = 22/98 (22%)
Query: 278 MKTHNHHGNGPGGGGHVTYTCKQCNLTFTNKHLFRNHKLFEADEFFDGEVPLYESSSDKE 337
M H+HH N Y CK C + ++F H
Sbjct: 1 MAHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHV---------------------- 38
Query: 338 DVEEEEEMEEEVWQCRHCPLKHRSHDLLLRHYTKEHGG 375
D E + + C C + +D L H K H G
Sbjct: 39 DSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPG 76
Score = 30.9 bits (69), Expect = 0.47
Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Query: 654 RFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRH-MRTHRVE 712
+ C+YC HV + H C C + L H ++ H E
Sbjct: 18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGE 77
Query: 713 RKYKC 717
+K
Sbjct: 78 ENFKL 82
Score = 29.7 bits (66), Expect = 1.5
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Query: 103 RFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRH-MRTHRVE 161
+ C+YC HV + H C C + L H ++ H E
Sbjct: 18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGE 77
Query: 162 RKY 164
+
Sbjct: 78 ENF 80
Score = 29.0 bits (64), Expect = 2.9
Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 4/70 (5%)
Query: 775 NHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQY----HVCPHCGKKFTRKA 830
+H + + E K C + ++ H H +VC C R
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 831 ELQLHIKGIH 840
L H H
Sbjct: 65 ALSEHNLKYH 74
Score = 27.8 bits (61), Expect = 5.7
Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 18/95 (18%)
Query: 702 LRRHMRTHRVERKYKC-VCGDGFNFNVSLKVHMAKCAFYLKSLEKEGESDHGGYETSSL- 759
+ + +VE Y+C C H+ +S+H +S
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHV--------------DSEHPNVVLNSSY 51
Query: 760 -CYHCGYYSKNRSTLKNHVRVEH-GENQAKRKEKK 792
C C + +K L H H GE K K
Sbjct: 52 VCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK 86
Score = 27.8 bits (61), Expect = 6.3
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 745 KEGESDHGGYETSSLCYHCGYYSKNRSTLKNHVRVEHGENQAKRKEK-KICDICSAEVVH 803
++ + GGYE C +C + + + + HV EH C+ +
Sbjct: 10 QQNKKVEGGYE----CKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 804 LAIHKKHSHSGQ 815
L+ H H G+
Sbjct: 66 LSEHNLKYHPGE 77
Score = 27.4 bits (60), Expect = 8.6
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 14 FTCRICQAVFDKYVRLCGHLRTVH-NEKPEKSNLCFVCAKVFATRATLTLHIKQMHGG 70
+ C+ C H+ + H N S +C C + L+ H + H G
Sbjct: 19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPG 76
Score = 27.4 bits (60), Expect = 8.6
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 565 FTCRICQAVFDKYVRLCGHLRTVH-NEKPEKSNLCFVCAKVFATRATLTLHIKQMHGG 621
+ C+ C H+ + H N S +C C + L+ H + H G
Sbjct: 19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPG 76
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 36.4 bits (83), Expect = 0.001
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 847 KTYICEYCHKEFTFYNYLRRHMRVHTNEK 875
K + CEYC+K F F + L+ H+R+HTNEK
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 31.7 bits (71), Expect = 0.053
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 468 FVCQYCNKDFPFMKYLKRHLRVHSND 493
F C+YCNK F F L+ HLR+H+N+
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNE 35
Score = 28.3 bits (62), Expect = 0.98
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 257 KKFVCQYCNKEFPFQGYLNKHMKTH 281
K F C+YCNK F F+ L H++ H
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIH 32
Score = 26.0 bits (56), Expect = 7.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 104 FTCEYCVKPFRRTQELRNHVK 124
FTCEYC K F+ L+ H++
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLR 30
Score = 26.0 bits (56), Expect = 7.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 655 FTCEYCVKPFRRTQELRNHVK 675
FTCEYC K F+ L+ H++
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLR 30
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 35.8 bits (83), Expect = 0.002
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 867 HMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
R T KP++C DC +F+ + L H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALH 30
Score = 33.8 bits (78), Expect = 0.010
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 252 KHMLEKKFVCQYCNKEFPFQGYLNKHMKTH 281
K F C C++ F +L H K H
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 28.8 bits (65), Expect = 0.55
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTH 158
+P +C C ++F ++L H + H
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 28.8 bits (65), Expect = 0.55
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTH 709
+P +C C ++F ++L H + H
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 28.8 bits (65), Expect = 0.72
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 842 KHQLEKTYICEYCHKEFTFYNYLRRHMRVH 871
K + C C + F+ ++L H + H
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 27.7 bits (62), Expect = 1.6
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 486 HLRVHSNDVQVPHPYKCTACNAAFNTKSALNVHRKT 521
R + P++C C+ +F+ L +HRK
Sbjct: 2 STRGSTGI----KPFQCPDCDRSFSRSDHLALHRKR 33
Score = 26.9 bits (60), Expect = 3.5
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 811 SHSGQY-HVCPHCGKKFTRKAELQLHIK 837
+G CP C + F+R L LH K
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 26.5 bits (59), Expect = 3.9
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 461 KHQLEQRFVCQYCNKDFPFMKYLKRHLRVH 490
+ F C C++ F +L H + H
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 25.8 bits (57), Expect = 8.7
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 436 YDCTFCGKGFTRKAELNIHIK 456
+ C C + F+R L +H K
Sbjct: 12 FQCPDCDRSFSRSDHLALHRK 32
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 35.0 bits (81), Expect = 0.003
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 847 KTYICEYCHKEFTFYNYLRRHMRVHTNEK 875
++++CE C + F +L+RH R HTNEK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 31.9 bits (73), Expect = 0.041
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 137 RCEVCGKTFGLKEYLRRHMRTHRVER 162
CEVC + F +E+L+RH R+H E+
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 31.9 bits (73), Expect = 0.041
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 688 RCEVCGKTFGLKEYLRRHMRTHRVER 713
CEVC + F +E+L+RH R+H E+
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 29.6 bits (67), Expect = 0.30
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 468 FVCQYCNKDFPFMKYLKRHLRVHSND 493
FVC+ C + F ++LKRH R H+N+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 26.5 bits (59), Expect = 3.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 257 KKFVCQYCNKEFPFQGYLNKHMKTH 281
+ FVC+ C + F Q +L +H ++H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 35.6 bits (82), Expect = 0.003
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
E + C C + FT NYL +H R H +
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 34.4 bits (79), Expect = 0.007
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 866 RHMRVHTNEKPYKCKDCGAAFNHNVSLKNHK 896
E P+KC C F L H+
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHE 32
Score = 31.4 bits (71), Expect = 0.11
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 134 ERP-RCEVCGKTFGLKEYLRRHMRTHRVER 162
E P +C C + F + YL +H RTH +
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 31.4 bits (71), Expect = 0.11
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 685 ERP-RCEVCGKTFGLKEYLRRHMRTHRVER 713
E P +C C + F + YL +H RTH +
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 28.7 bits (64), Expect = 0.87
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 253 HMLEKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGG 291
E F C C++ F + YL +H +TH +GP G
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTHARK-SGPSSG 44
Score = 27.9 bits (62), Expect = 1.7
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 499 PYKCTACNAAFNTKSALNVHRKT 521
P+KC+ C+ F ++ L H +T
Sbjct: 12 PFKCSKCDRVFTQRNYLVQHERT 34
Score = 27.5 bits (61), Expect = 2.0
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 462 HQLEQRFVCQYCNKDFPFMKYLKRHLRVHS 491
E F C C++ F YL +H R H+
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTHA 36
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 39.1 bits (90), Expect = 0.010
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 129 TETPEERPRCEVCGKTFGLKEYLRRHMRTHRVE 161
T + +C VC L H+ +H +
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVASHGLH 206
Score = 39.1 bits (90), Expect = 0.010
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 680 TETPEERPRCEVCGKTFGLKEYLRRHMRTHRVE 712
T + +C VC L H+ +H +
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVASHGLH 206
Score = 36.8 bits (84), Expect = 0.046
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 497 PHPYKCTACNAAFNTKSALNVHRKT 521
H Y+C C+A + L+ H +
Sbjct: 178 GHGYQCHVCSAVLFSPLDLDAHVAS 202
Score = 36.8 bits (84), Expect = 0.046
Identities = 5/31 (16%), Positives = 8/31 (25%)
Query: 461 KHQLEQRFVCQYCNKDFPFMKYLKRHLRVHS 491
+ C C+ L H+ H
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
Score = 36.4 bits (83), Expect = 0.059
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 256 EKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNG 287
+ C C+ L+ H+ +H HGN
Sbjct: 178 GHGYQCHVCSAVLFSPLDLDAHVASHGLHGNM 209
Score = 33.3 bits (75), Expect = 0.58
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 782 GENQAKRKEKKICDICSAEVVH---LAIHKKHSHSGQYHVCPHCGKKFTRKAELQLH 835
G + K +I + SA V + SG + C C +L H
Sbjct: 143 GGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAH 199
Score = 31.4 bits (70), Expect = 1.8
Identities = 11/95 (11%), Positives = 23/95 (24%), Gaps = 3/95 (3%)
Query: 780 EHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQYHVCPHCGKKFTRKAELQLHIK-- 837
+ + + + D L+ + G + P + + +
Sbjct: 109 QAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPAR 168
Query: 838 -GIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVH 871
G+ Y C C L H+ H
Sbjct: 169 VGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 32.0 bits (72), Expect = 0.048
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 847 KTYICEYCHKEFTFYNYLRRHMRVHTNEK 875
K Y+C +C ++F L+RH+R+HT EK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 31.4 bits (72), Expect = 0.057
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 847 KTYIC--EYCHKEFTFYNYLRRHMRVHTNEK 875
+ ++C YC K FT + L+RH R HT EK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 26.4 bits (59), Expect = 3.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 141 CGKTFGLKEYLRRHMRTHRVER 162
CGK F + L+RH RTH E+
Sbjct: 10 CGKRFTRSDELQRHKRTHTGEK 31
Score = 26.4 bits (59), Expect = 3.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 692 CGKTFGLKEYLRRHMRTHRVER 713
CGK F + L+RH RTH E+
Sbjct: 10 CGKRFTRSDELQRHKRTHTGEK 31
Score = 25.3 bits (56), Expect = 9.4
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 436 YDCTF--CGKGFTRKAELNIHIK 456
+ CT+ CGK FTR EL H +
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKR 25
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 31.8 bits (72), Expect = 0.064
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 125 AVHLTETPEERPRCEV--CGKTFGLKEYLRRHMRTHRVER 162
++ E P++ C C KTF + +R H++TH +R
Sbjct: 8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 31.8 bits (72), Expect = 0.064
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 676 AVHLTETPEERPRCEV--CGKTFGLKEYLRRHMRTHRVER 713
++ E P++ C C KTF + +R H++TH +R
Sbjct: 8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 30.2 bits (68), Expect = 0.25
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 840 HLKHQLEKTYICEY--CHKEFTFYNYLRRHMRVHTNEK 875
++K +KT+ C + C K F +R H++ H ++
Sbjct: 10 YVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 27.9 bits (62), Expect = 1.6
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 256 EKKFVCQY--CNKEFPFQGYLNKHMKTH 281
+K F C + C K F + + H++TH
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 27.1 bits (60), Expect = 3.1
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 457 AVHLKHQLEQRFVCQY--CNKDFPFMKYLKRHLRVHSND 493
++K ++ F C + C K F ++ H++ H D
Sbjct: 8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 35.2 bits (80), Expect = 0.075
Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Query: 836 IKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAAFNHNVSLKNH 895
+ I L Y +Y + + H + EK + + ++ L+
Sbjct: 169 CRDIRPGEWLRVWYSEDYMKR-LHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGP 227
Query: 896 KNSSCPKR 903
+ S ++
Sbjct: 228 IHLSVLRQ 235
Score = 30.9 bits (69), Expect = 1.5
Identities = 5/53 (9%), Positives = 14/53 (26%)
Query: 823 GKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEK 875
+ + ++ + EK E + LR + + +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 29.4 bits (65), Expect = 5.2
Identities = 3/51 (5%), Positives = 16/51 (31%)
Query: 440 FCGKGFTRKAELNIHIKAVHLKHQLEQRFVCQYCNKDFPFMKYLKRHLRVH 490
+ + + ++ + E+R + + + L+ + +
Sbjct: 181 WYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 35.9 bits (82), Expect = 0.089
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 493 DVQVPHPYKCTACNAAFNTKSALNVHRKT 521
+ P Y C CNA F+T SAL+ H ++
Sbjct: 110 PIVNPSSYVCNVCNARFSTMSALSEHLRS 138
Score = 32.1 bits (72), Expect = 1.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 43 KSNLCFVCAKVFATRATLTLHIKQMHGGG 71
S +C VC F+T + L+ H++ H
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDHRDD 143
Score = 32.1 bits (72), Expect = 1.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 594 KSNLCFVCAKVFATRATLTLHIKQMHGGG 622
S +C VC F+T + L+ H++ H
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDHRDD 143
Score = 32.1 bits (72), Expect = 1.3
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 545 LEQKEMAKKPTVTEPAGEEAFTCRICQAVFDKYVRLCGHLRTVH 588
+ + K + P+ + C +C A F L HLR+ H
Sbjct: 100 VSDPQSMKVTPIVNPSS---YVCNVCNARFSTMSALSEHLRSDH 140
Score = 31.7 bits (71), Expect = 1.4
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 8 SVREEAFTCRICQAVFDKYVRLCGHLRTVH 37
V ++ C +C A F L HLR+ H
Sbjct: 111 IVNPSSYVCNVCNARFSTMSALSEHLRSDH 140
Score = 31.7 bits (71), Expect = 1.4
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 257 KKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGG 291
+VC CN F L++H+++ H +
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRS--DHRDDASTL 147
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 30.4 bits (69), Expect = 0.15
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 846 EKTYICEY--CHKEFTFYNYLRRHMRVHTNEK 875
+K +IC C K + ++LR H+R HT E+
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 28.1 bits (63), Expect = 1.0
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 130 ETPEERP-RCEV--CGKTFGLKEYLRRHMRTHRVER 162
+ +++ C + CGK +G +LR H+R H ER
Sbjct: 2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 28.1 bits (63), Expect = 1.0
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 681 ETPEERP-RCEV--CGKTFGLKEYLRRHMRTHRVER 713
+ +++ C + CGK +G +LR H+R H ER
Sbjct: 2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 30.5 bits (69), Expect = 0.15
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 847 KTYICEYCHKEFTFYNYLRRHMRVHTNEK 875
++Y C +C +EF L HM VH ++
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDR 33
Score = 27.4 bits (61), Expect = 2.1
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 257 KKFVCQYCNKEFPFQGYLNKHMKTH 281
+ + C +C +EF L HM H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
Score = 27.0 bits (60), Expect = 3.0
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 101 PPR-FTCEYCVKPFRRTQELRNHVKA 125
PPR +TC +C + FR Q L H+
Sbjct: 3 PPRSYTCSFCKREFRSAQALGGHMNV 28
Score = 27.0 bits (60), Expect = 3.0
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 652 PPR-FTCEYCVKPFRRTQELRNHVKA 676
PPR +TC +C + FR Q L H+
Sbjct: 3 PPRSYTCSFCKREFRSAQALGGHMNV 28
Score = 25.9 bits (57), Expect = 7.2
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 138 CEVCGKTFGLKEYLRRHMRTHRVER 162
C C + F + L HM HR +R
Sbjct: 9 CSFCKREFRSAQALGGHMNVHRRDR 33
Score = 25.9 bits (57), Expect = 7.2
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 689 CEVCGKTFGLKEYLRRHMRTHRVER 713
C C + F + L HM HR +R
Sbjct: 9 CSFCKREFRSAQALGGHMNVHRRDR 33
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.9 bits (69), Expect = 0.16
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHT 872
Q EK + C C K F+ YL +H R+HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 30.6 bits (68), Expect = 0.20
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 132 PEERPRCEVCGKTFGLKEYLRRHMRTH 158
E+ +C C KTF +YL +H R H
Sbjct: 9 KEKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 30.6 bits (68), Expect = 0.20
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 683 PEERPRCEVCGKTFGLKEYLRRHMRTH 709
E+ +C C KTF +YL +H R H
Sbjct: 9 KEKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 30.6 bits (68), Expect = 0.21
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 462 HQLEQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQ 495
Q E+ F C C K F KYL +H R+H+ V+
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVK 40
Score = 26.7 bits (58), Expect = 4.4
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 253 HMLEKKFVCQYCNKEFPFQGYLNKHMKTH 281
EK F C C K F YL +H + H
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
>3ucp_A UNDA; beta-barrel, C-type cytochrome, electron transport, C-type H
cell surface, transport protein; HET: HEC; 1.76A
{Shewanella SP} PDB: 3ufh_A* 3ufk_A*
Length = 874
Score = 34.6 bits (77), Expect = 0.19
Identities = 25/252 (9%), Positives = 57/252 (22%), Gaps = 11/252 (4%)
Query: 707 RTHRVERKYKCVCGDGFNFNVSLKVHMAKCAFYLKSLEKEGESDHGGYETSSLCYHCGYY 766
H+ G ++F+ ++ A+ + K+ + C C
Sbjct: 309 AIHKGTYAMVGYSGTAYDFSGTMAKAAAESGYPQYREGKDVSERVTLPVSIGNCQSCH-- 366
Query: 767 SKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQYHV-CPHCGKK 825
+ K + C C + + + + G
Sbjct: 367 -------STDDKGPVDAASFKHHKGLACASCHMSGFNPVDNSEWLTPPEGQKDRGFVGNY 419
Query: 826 FTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKPYKCKDCGAA 885
F A ++ + + C CH E + H+ K + +
Sbjct: 420 FHYYATPEIDGIPGVNLVHVFQNGGCASCHAEQGEEGSAKYHLAKANATKLLRTEYAYKL 479
Query: 886 FNHNVSLKNHKNSSCPKRDMTATP-PAPRRTESNTRHSHLSSNSTSPSHNGPVDLGHNPA 944
N + + + P P+ E + + +
Sbjct: 480 ENGTFDVAKGELTFTVNWHSDVAPHQDPKVKEFWVSLTAFNGTEYTMGPRPSNGTLGRSE 539
Query: 945 MHSAPTLATSSN 956
+ LA
Sbjct: 540 NRISVNLAKVET 551
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 31.8 bits (71), Expect = 0.21
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 780 EHGENQAKRKEKKICDICSA----EVVHLAIHKKHSHSGQ-YHVCPHCGKKFTRKAELQL 834
E + + + +C C+ +V L H + Q C HC K+F KA L
Sbjct: 13 EQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNY 72
Query: 835 HIKGIH 840
H H
Sbjct: 73 HTMAEH 78
Score = 30.3 bits (67), Expect = 0.91
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 406 KKREMKICDICCA----EVLHLQQHQKAAHSGV-CYDCTFCGKGFTRKAELNIHIKAVH 459
+R +C C ++ L++H + C C K F KA LN H A H
Sbjct: 20 HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
Score = 28.4 bits (62), Expect = 3.9
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Query: 14 FTCRICQAVFDKYVR-LCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGGGQ 72
C C V K + L H+ + C C K F ++A L H H
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALK--CQHCRKQFKSKAGLNYHTMAEHSAKP 82
Query: 73 TDYVREKE 80
+D +
Sbjct: 83 SDAEASEG 90
Score = 28.4 bits (62), Expect = 3.9
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Query: 565 FTCRICQAVFDKYVR-LCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGGGQ 623
C C V K + L H+ + C C K F ++A L H H
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALK--CQHCRKQFKSKAGLNYHTMAEHSAKP 82
Query: 624 TDYVREKE 631
+D +
Sbjct: 83 SDAEASEG 90
Score = 27.6 bits (60), Expect = 7.8
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 77 REKEVCEICSA----RVVNLAEH-KLCHEP-PRFTCEYCVKPFRRTQELRNHVKAVHLTE 130
R + VC C+ +V L +H ++C + C++C K F+ L H A H +
Sbjct: 22 RGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
Query: 131 TP 132
Sbjct: 82 PS 83
Score = 27.6 bits (60), Expect = 7.8
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 628 REKEVCEICSA----RVVNLAEH-KLCHEP-PRFTCEYCVKPFRRTQELRNHVKAVHLTE 681
R + VC C+ +V L +H ++C + C++C K F+ L H A H +
Sbjct: 22 RGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
Query: 682 TP 683
Sbjct: 82 PS 83
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase,
PP-type, putative cell cycle PR PSI, protein structure
initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2
c.26.2.5 d.229.1.1
Length = 433
Score = 33.9 bits (78), Expect = 0.26
Identities = 8/59 (13%), Positives = 17/59 (28%), Gaps = 15/59 (25%)
Query: 447 RKAELNIHIKAVHLKHQL------EQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVPHP 499
R + ++A+H+ H L C + + + VQ+
Sbjct: 37 RTENPGVALRAIHVHHGLSANADAWVTHCENVCQ---------QWQVPLVVERVQLAQE 86
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 31.3 bits (70), Expect = 0.38
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 406 KKREMKICDICCAEVLHLQQHQKAAHSGVCYDCTFCGKGFTRKAELNIHIKAVHLK 461
+K+ K+C C V ++Q + + +C C + + + +L HI H++
Sbjct: 33 EKKGDKMCPGCSDPVQRIEQCTRGSLF-MCSIVQGCKRTYLSQRDLQAHINHRHMR 87
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex,
restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE;
1.50A {Helicobacter pylori} PDB: 3fc3_A*
Length = 200
Score = 32.2 bits (72), Expect = 0.51
Identities = 18/117 (15%), Positives = 29/117 (24%), Gaps = 6/117 (5%)
Query: 757 SSLCYHCGYYSKNRSTLKNHVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHS-GQ 815
S++ G R ++ K +KKIC+IC + + G+
Sbjct: 42 SAMVLFIGLNELKRVDFSELEAIDI-YRTGKGYDKKICNICHILKNTDGFEINQTDAKGR 100
Query: 816 YHVCPHC----GKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFTFYNYLRRHM 868
P C K K + + C C K
Sbjct: 101 KTTRPSCRECRKNIDGVKLSSTEKKKMDEIAPPKGSVFTCPICEKRSIVGVTANLVH 157
Score = 29.5 bits (65), Expect = 4.3
Identities = 31/149 (20%), Positives = 45/149 (30%), Gaps = 13/149 (8%)
Query: 160 VERKYNGFESAALCFICGFYHKHKKMIYRHIKEHIEP-KKQEKKVCDICSAEVI----HL 214
V R NG +SA + FI K + K +KK+C+IC +
Sbjct: 34 VIRAVNG-KSAMVLFIGLNELKRVDFSELEAIDIYRTGKGYDKKICNICHILKNTDGFEI 92
Query: 215 GTHQKVAHSGVTYNCKFCSMKFTRVGQMNIHIKTV-HLKHMLEKKFVCQYCNKEFPFQGY 273
+C+ C V + K + + F C C K G
Sbjct: 93 NQTDAKGRKTTRPSCRECRKNIDGVKLSSTEKKKMDEIAPPKGSVFTCPICEKRSI-VGV 151
Query: 274 LNKHMKTHNHHGNGPGGGGHVTYTCKQCN 302
+ HNH G + C CN
Sbjct: 152 TANLVHDHNHD-----TGWGREWICDSCN 175
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA
complex; 3.65A {Geobacillus kaustophilus}
Length = 464
Score = 32.7 bits (75), Expect = 0.59
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 16/57 (28%)
Query: 448 KAELNIHIKAVHLKHQL-------EQRFVCQYCNKDFPFMKYLKRHLRVHSNDVQVP 497
+ E + + A H+ H E FV ++C +R + + + VP
Sbjct: 42 RDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCV---------ERRILCETAQIDVP 89
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer
membrane, electron trans; HET: HEC; 3.20A {Shewanella
oneidensis}
Length = 669
Score = 32.5 bits (72), Expect = 0.79
Identities = 31/168 (18%), Positives = 47/168 (27%), Gaps = 6/168 (3%)
Query: 803 HLAIHKKHSHSGQYHVCPHC---GKKFTRKAELQLHIKGIHLKHQLEKTYICEYCHKEFT 859
H + Q C C K I HL + C+ CH +
Sbjct: 198 HSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSISNCQTCHADNP 257
Query: 860 FYNYLRRHMRVHTNEKPYKC---KDCGAAFNHNVSLKNHKNSSCPKRDMTATPPAPRRTE 916
+ RV T E C + A H N +C D TA +
Sbjct: 258 DLADRQNWYRVPTMEACGACHTQINFPAGQGHPAQTDNSNCVACHNADWTANVHSNAAQT 317
Query: 917 SNTRHSHLSSNSTSPSHNGPVDLGHNPAMHSAPTLATSSNVRIPKFDR 964
S + S +S S NG + + + + T S ++
Sbjct: 318 SALAQFNASISSASMDANGTITVAVSLTNPTTGTAYADSADKLKFISD 365
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 28.3 bits (63), Expect = 0.86
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 258 KFVCQYCNKEFPFQGYLNKHMKTHNHHGN 286
KF C C K F +L+KH+ H G
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLGE 30
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.6 bits (63), Expect = 0.91
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 872 TNEKPYKCKDCGAAFNHNVSLKNHK 896
+ EK ++C++CG F VSL H+
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQ 32
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 29.8 bits (66), Expect = 1.1
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 780 EHGENQAKRKEKKICDICSA----EVVHLAIHKKHSHSGQYHVCPHCGKKFTRKAELQLH 835
E + K C C A + L H ++ + C HCGK+ A ++ H
Sbjct: 23 EQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFT-CHHCGKQLRSLAGMKYH 81
Query: 836 IKGIH 840
+ H
Sbjct: 82 VMANH 86
Score = 29.1 bits (64), Expect = 2.4
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 77 REKEVCEICSA----RVVNLAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETP 132
+ C C A + L +H + FTC +C K R ++ HV A H +
Sbjct: 32 KGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS 91
Query: 133 E 133
Sbjct: 92 G 92
Score = 29.1 bits (64), Expect = 2.4
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 628 REKEVCEICSA----RVVNLAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETP 683
+ C C A + L +H + FTC +C K R ++ HV A H +
Sbjct: 32 KGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS 91
Query: 684 E 684
Sbjct: 92 G 92
Score = 27.5 bits (60), Expect = 8.0
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 250 HLKHMLEKKFVCQYCNKEFPFQGYLNKH-MKTHNHHGNGPGGG 291
H+++ ++ F C +C K+ + H M HN +GP G
Sbjct: 54 HMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSGPSSG 96
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 27.9 bits (62), Expect = 1.2
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 258 KFVCQYCNKEFPFQGYLNKHMKTHN 282
KF C C K F +L H+ H
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHE 26
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 28.2 bits (62), Expect = 1.2
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTN 873
++ ++C C FT RH++VHT+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 31.0 bits (70), Expect = 2.3
Identities = 13/79 (16%), Positives = 28/79 (35%)
Query: 894 NHKNSSCPKRDMTATPPAPRRTESNTRHSHLSSNSTSPSHNGPVDLGHNPAMHSAPTLAT 953
NH + TPP+ +N +S LS+ + SP + + +
Sbjct: 18 NHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLANNTSTDGSFLKERNAQN 77
Query: 954 SSNVRIPKFDRRQHQRSMM 972
+ ++ + R ++M
Sbjct: 78 TDSLSREDYLRLWRHDALM 96
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.70A
{Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Length = 262
Score = 30.6 bits (70), Expect = 2.4
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 816 YHVCPHCGKK 825
Y VCP+CG K
Sbjct: 193 YFVCPNCGHK 202
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.0 bits (67), Expect = 3.0
Identities = 8/48 (16%), Positives = 11/48 (22%), Gaps = 4/48 (8%)
Query: 776 HVRVEHGENQAKRKEKKICDICSAEVVHLAIHKKHSHSGQYHVCPHCG 823
+ G C C + + G VC CG
Sbjct: 6 SIDKRAGRRGPNLNIVLTCPECKVYPPKIV---ERFSEGDV-VCALCG 49
Score = 28.9 bits (64), Expect = 6.6
Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 10/55 (18%)
Query: 333 SSDKEDVEEEEEMEEEVWQCRHCPLKHRSHDLLLRHYTKEHGGYDWASVCYYCGY 387
S DK + + C C K ++ R G VC CG
Sbjct: 6 SIDKRAGRRGPNLNIVL-TCPEC--KVYPPKIVERF---SEGDV----VCALCGL 50
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 30.3 bits (69), Expect = 3.2
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 686 RPRCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCG 720
C C K L + + + + +C CG
Sbjct: 154 EAVCCTCNKIVKLNKIMLQKTSHFMHQLPPECPCG 188
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A
{Saccharomyces cerevisiae} PDB: 3to6_A* 1fy7_A* 1mja_A*
1mjb_A* 3to9_A* 1mj9_A*
Length = 276
Score = 29.9 bits (67), Expect = 3.4
Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 13/91 (14%)
Query: 97 LCHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMR 156
L E + ++ ++ F ++ + K L P G + Y ++
Sbjct: 30 LTDEDFIYIDDFTLQYFGSKKQYERYRKKCTLRHPP-------------GNEIYRDDYVS 76
Query: 157 THRVERKYNGFESAALCFICGFYHKHKKMIY 187
++ + LC + + HK + Y
Sbjct: 77 FFEIDGRKQRTWCRNLCLLSKLFLDHKTLYY 107
Score = 29.5 bits (66), Expect = 5.4
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
+ YI ++ + F R+ + T P
Sbjct: 31 TDEDFIYIDDFTLQYFGSKKQYERYRKKCTLRHP 64
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 28.8 bits (63), Expect = 3.7
Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 8/87 (9%)
Query: 228 NCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNG 287
CK CS Q H ++ + + + P K
Sbjct: 34 QCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPA--------KKFKAAPAE 85
Query: 288 PGGGGHVTYTCKQCNLTFTNKHLFRNH 314
G + C CN+TF++ + +H
Sbjct: 86 ISDGEDRSKCCPVCNMTFSSPVVAESH 112
Score = 27.6 bits (60), Expect = 9.8
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 4/88 (4%)
Query: 498 HPYKCTACNAAFNTKSALNVHRKTCPNLELLNRDLLPNQTGTDDEKKLEQKEMAKKPTVT 557
+C C+A ++S H ++ + + R + NQ E + K+ P
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQG----EDSVPAKKFKAAPAEI 86
Query: 558 EPAGEEAFTCRICQAVFDKYVRLCGHLR 585
+ + C +C F V H
Sbjct: 87 SDGEDRSKCCPVCNMTFSSPVVAESHYI 114
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 26.8 bits (58), Expect = 3.8
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 133 EERP-RCEVCGKTFGLKEYLRRHMRTH 158
E+P C VCG F K+ + H+R+H
Sbjct: 7 GEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 26.8 bits (58), Expect = 3.8
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 684 EERP-RCEVCGKTFGLKEYLRRHMRTH 709
E+P C VCG F K+ + H+R+H
Sbjct: 7 GEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 26.0 bits (56), Expect = 9.6
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 871 HTNEKPYKCKDCGAAFNHNVSLKNHKNS 898
+ EKPY C CG F + H S
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRS 32
Score = 26.0 bits (56), Expect = 9.7
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVH 871
EK Y C C F + + H+R H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 26.2 bits (57), Expect = 4.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 819 CPHCGKKFTRKAELQLHIK 837
CP C K+F R L HIK
Sbjct: 5 CPACPKRFMRSDALSKHIK 23
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 26.3 bits (57), Expect = 5.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 46 LCFVCAKVFATRATLTLHIKQMHGGGQ 72
+C +C K F + L HI+++HG Q
Sbjct: 9 VCALCLKKFVSSIRLRSHIREVHGAAQ 35
Score = 26.3 bits (57), Expect = 5.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 597 LCFVCAKVFATRATLTLHIKQMHGGGQ 623
+C +C K F + L HI+++HG Q
Sbjct: 9 VCALCLKKFVSSIRLRSHIREVHGAAQ 35
Score = 25.6 bits (55), Expect = 8.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 104 FTCEYCVKPFRRTQELRNHVKAVH 127
+ C C+K F + LR+H++ VH
Sbjct: 8 YVCALCLKKFVSSIRLRSHIREVH 31
Score = 25.6 bits (55), Expect = 8.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 655 FTCEYCVKPFRRTQELRNHVKAVH 678
+ C C+K F + LR+H++ VH
Sbjct: 8 YVCALCLKKFVSSIRLRSHIREVH 31
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 29.5 bits (65), Expect = 6.6
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 309 HLFRNHKLFEADEFFDGEVPLYESSSDKEDVEEEEEMEEE 348
++ + A ++F G +E D+E+ +E+E+ EE+
Sbjct: 346 EQLKDKLIPRAVDWFTGAALEFEFEEDEEEADEDEDEEED 385
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 27.4 bits (61), Expect = 6.7
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 10/58 (17%)
Query: 11 EEAFTCRICQAVFDKYVRL--CGH------LRTVHNEKPEKSNLCFVCAKVFATRATL 60
+ C IC+ + V + CG+ +RT E E + C C + + L
Sbjct: 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHT--CPTCHQNDVSPDAL 66
Score = 27.4 bits (61), Expect = 6.7
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 10/58 (17%)
Query: 562 EEAFTCRICQAVFDKYVRL--CGH------LRTVHNEKPEKSNLCFVCAKVFATRATL 611
+ C IC+ + V + CG+ +RT E E + C C + + L
Sbjct: 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHT--CPTCHQNDVSPDAL 66
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 28.4 bits (63), Expect = 6.9
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 511 TKSALNVHRKTCPNLELLNRDLLPNQTGTDDEKKLEQKEMAKKPTVTEPAG------EEA 564
+ SA V++ + + L P Q E QK + + E++
Sbjct: 19 SPSASKVYKASDSAEAIEAFQLTPQQQHLIREDCQNQKLWDEVLSHLVEGPNFLKKLEQS 78
Query: 565 FTCRICQAVFDKYVRL-CGH 583
F C CQ + + V C H
Sbjct: 79 FMCVCCQELVYQPVTTECFH 98
>3u5e_B 60S ribosomal protein L3; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3o5h_C 3o58_C 3u5i_B
3izc_C 3izs_C 1s1i_C 3jyw_C
Length = 387
Score = 29.0 bits (64), Expect = 7.6
Identities = 21/189 (11%), Positives = 48/189 (25%), Gaps = 11/189 (5%)
Query: 147 LKEYLRRHMRTHRVERKYNGFESAALCFICGFYHKHKKMIYRHIKEHIEPKKQEKKVCDI 206
L H+ R Y + + + K+ + +E KK V +
Sbjct: 102 LTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYAQDGAGIERELARIKKYASVVRVL 161
Query: 207 CSAEVIHLGTHQKVAHSGVTYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFV------ 260
++ QK AH + + + + + +
Sbjct: 162 VHTQIRKTPLAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVT 221
Query: 261 ----CQYCNKEFPFQGYLNKHMKTHNHHGN-GPGGGGHVTYTCKQCNLTFTNKHLFRNHK 315
+ + + K + G HV ++ + + NHK
Sbjct: 222 KGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHK 281
Query: 316 LFEADEFFD 324
++ + D
Sbjct: 282 IYRVGKGDD 290
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural
genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo
sapiens}
Length = 280
Score = 28.8 bits (64), Expect = 7.7
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 843 HQLEKTYICEYCHKEFTFYNYLRRHMRVHTNEKP 876
L Y+CE+C K L+RH+ P
Sbjct: 29 TTLPVLYLCEFCLKYGRSLKCLQRHLTKCDLRHP 62
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 29.2 bits (65), Expect = 8.2
Identities = 9/124 (7%), Positives = 32/124 (25%), Gaps = 2/124 (1%)
Query: 191 KEHIEPKKQEKKVCDICSAEVIHLGTHQKVAHSGVTYNCKFCSMKFTRVGQMNIHIKTVH 250
+E+I P +++ + +G+ S + + + H
Sbjct: 84 EEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEH 143
Query: 251 LKHMLEKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGHVTYTCKQCNLTFTNKHL 310
+ + + + + + + + + ++K
Sbjct: 144 KESLQKILHGYKKGTLDGD--DLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLT 201
Query: 311 FRNH 314
R+H
Sbjct: 202 LRSH 205
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 66
Score = 26.5 bits (58), Expect = 9.5
Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 851 CEYCHKEFTFYNYLRRHMRVHTNEKPYKC-KDCGAAFNHNVSLKNHKNSSCPKR 903
C YC KEF F + ++ H P C CG L H SC
Sbjct: 13 CTYCTKEFVF-DTIQSHQY-QCPRLPVACPNQCGVGTVAREDLPGHLKDSCNTA 64
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 26.6 bits (59), Expect = 9.6
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 10/70 (14%)
Query: 551 AKKPTVTEPAGEEAFTCRICQAVFDKYVRL--CGH------LRTVHNEKPEKSNLCFVCA 602
+ + + + C IC+ + V + CG+ +RT E E + C C
Sbjct: 2 SSGSSGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHT--CPTCH 59
Query: 603 KVFATRATLT 612
+ + L+
Sbjct: 60 QNDVSPDALS 69
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.37.1.5
Length = 121
Score = 27.6 bits (61), Expect = 9.6
Identities = 8/46 (17%), Positives = 13/46 (28%), Gaps = 1/46 (2%)
Query: 337 EDVEEEEEMEEEVWQCRHCPLKHRSHDLLLRHYTKEHGGYDWASVC 382
E + C C S + H EH ++ S+
Sbjct: 3 SGSSGEPAHGRQHTPCLFCDRLFASAEETFSHCKLEH-QFNIDSMV 47
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 26.5 bits (58), Expect = 9.7
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 229 CKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGP 288
C+ C ++ + + H + + +C C + + L H + G+GP
Sbjct: 20 CQHCDLELSILKL------KEHEDYCGARTELCGNCGRNVLVK-DLKTHPEVCGREGSGP 72
Query: 289 GGG 291
G
Sbjct: 73 SSG 75
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.135 0.437
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,491,413
Number of extensions: 940279
Number of successful extensions: 6930
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5886
Number of HSP's successfully gapped: 1966
Length of query: 1000
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 897
Effective length of database: 3,825,930
Effective search space: 3431859210
Effective search space used: 3431859210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.1 bits)