BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15136
(107 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FTP|A Chain A, Three-Dimensional Structure Of The Muscle Fatty-Acid-
Binding Protein Isolated From The Desert Locust,
Schistocerca Gregaria
pdb|1FTP|B Chain B, Three-Dimensional Structure Of The Muscle Fatty-Acid-
Binding Protein Isolated From The Desert Locust,
Schistocerca Gregaria
Length = 133
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 71/107 (66%), Gaps = 1/107 (0%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VG I RK G ++SPV+ELE D + L S + KN FK+GEEFDEET DGRKVKS
Sbjct: 26 VGAIERKAGLALSPVIELEILDGDKFKLTSKTAIKNTEFTFKLGEEFDEETLDGRKVKST 85
Query: 61 ITIDG-DTMTHIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTRIYKP 106
IT DG + + H QKGD T IIR FS ++ +T+ + D+V TRIYK
Sbjct: 86 ITQDGPNKLVHEQKGDHPTIIIREFSKEQCVITIKLGDLVATRIYKA 132
>pdb|2FLJ|A Chain A, Fatty Acid Binding Protein From Locust Flight Muscle In
Complex With Oleate
Length = 134
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VG I RK G ++SPV+ELE D + L S + KN FK+GEEFDE+T DGRKVKS+
Sbjct: 27 VGAIERKAGLALSPVIELEVLDGDKFKLTSKTAIKNTEFTFKLGEEFDEDTLDGRKVKSI 86
Query: 61 ITIDG-DTMTHIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTRIYKP 106
IT DG + + H QKGD T IIR FS ++ +T+ + D+V TRIYK
Sbjct: 87 ITQDGPNKLVHEQKGDHPTIIIREFSKEQCVITIKLGDLVATRIYKA 133
>pdb|3PPT|A Chain A, Rep1-nxsq Fatty Acid Transporter
Length = 133
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VG++ RK+ + +P E+ K D ++++ +++TFK I F IG+EFDE T DGRK+K+
Sbjct: 25 VGMVMRKMANAATPTQEI-KIDGDSWSIKTSTTFKTTDISFTIGQEFDETTGDGRKIKTT 83
Query: 61 ITIDGDTMTHIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
IDG+ M QKG ++ + R D ++ M L V+D+VCTRIYK
Sbjct: 84 CKIDGNAMIQDQKGSPDSILSREVKDGKMHMILKVNDVVCTRIYK 128
>pdb|3PP6|A Chain A, Rep1-nxsq Fatty Acid Transporter Y128f Mutant
pdb|3PP6|B Chain B, Rep1-nxsq Fatty Acid Transporter Y128f Mutant
pdb|3PP6|C Chain C, Rep1-nxsq Fatty Acid Transporter Y128f Mutant
Length = 131
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VG++ RK+ + +P E+ K D ++++ +++TFK I F IG+EFDE T DGRK+K+
Sbjct: 25 VGMVMRKMANAATPTQEI-KIDGDSWSIKTSTTFKTTDISFTIGQEFDETTGDGRKIKTT 83
Query: 61 ITIDGDTMTHIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
IDG+ M QKG ++ + R D ++ M L V+D+VCTRI+K
Sbjct: 84 CKIDGNAMIQDQKGSPDSILSREVKDGKMHMILKVNDVVCTRIFK 128
>pdb|3RSW|A Chain A, Crystal Structure Of Heart Fatty Acid Binding Protein
(Fabp3)
pdb|3RSW|B Chain B, Crystal Structure Of Heart Fatty Acid Binding Protein
(Fabp3)
Length = 158
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 68/106 (64%), Gaps = 2/106 (1%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VG TR+V + P +EK+ TL ++STFKN I FK+G EFDE T D RKVKS+
Sbjct: 51 VGFATRQVASMTKPTTIIEKNGD-ILTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSI 109
Query: 61 ITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+T+DG + H+QK D +ET ++R D ++ +TLT VCTR Y+
Sbjct: 110 VTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTHGTAVCTRTYE 155
>pdb|1G5W|A Chain A, Solution Structure Of Human Heart-Type Fatty Acid Binding
Protein
pdb|1HMR|A Chain A, 1.4 Angstroms Structural Studies On Human Muscle Fatty
Acid Binding Protein: Binding Interactions With Three
Saturated And Unsaturated C18 Fatty Acids
pdb|1HMS|A Chain A, 1.4 Angstroms Structural Studies On Human Muscle Fatty
Acid Binding Protein: Binding Interactions With Three
Saturated And Unsaturated C18 Fatty Acids
pdb|1HMT|A Chain A, 1.4 Angstroms Structural Studies On Human Muscle Fatty
Acid Binding Protein: Binding Interactions With Three
Saturated And Unsaturated C18 Fatty Acids
pdb|2HMB|A Chain A, Three-dimensional Structure Of Recombinant Human Muscle
Fatty Acid-binding Protein
Length = 132
Score = 89.4 bits (220), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 68/106 (64%), Gaps = 2/106 (1%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VG TR+V + P +EK+ TL ++STFKN I FK+G EFDE T D RKVKS+
Sbjct: 25 VGFATRQVASMTKPTTIIEKNGD-ILTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSI 83
Query: 61 ITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+T+DG + H+QK D +ET ++R D ++ +TLT VCTR Y+
Sbjct: 84 VTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTHGTAVCTRTYE 129
>pdb|1FDQ|A Chain A, Crystal Structure Of Human Brain Fatty Acid Binding
Protein
pdb|1FDQ|B Chain B, Crystal Structure Of Human Brain Fatty Acid Binding
Protein
pdb|1FE3|A Chain A, Crystal Structure Of Human Brain Fatty Acid Binding
Protein Oleic Acid
pdb|1JJX|A Chain A, Solution Structure Of Recombinant Human Brain-Type Fatty
Acid Binding Protein
Length = 131
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 65/108 (60%), Gaps = 6/108 (5%)
Query: 1 VGLITRKVGASVSP--VLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
VG TR+VG P ++ E D TL STFKN I F++GEEFDE T D R K
Sbjct: 25 VGFATRQVGNVTKPTVIISQEGDKVVIRTL---STFKNTEISFQLGEEFDETTADDRNCK 81
Query: 59 SVITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
SV+++DGD + HIQK D KET +R D ++ MTLT D+V R Y+
Sbjct: 82 SVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTFGDVVAVRHYE 129
>pdb|1BWY|A Chain A, Nmr Study Of Bovine Heart Fatty Acid Binding Protein
Length = 132
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 68/108 (62%), Gaps = 6/108 (5%)
Query: 1 VGLITRKVGASVSP--VLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
VG TR+VG P ++E+ D T + + STFKN I FK+G EFDE T D RKVK
Sbjct: 25 VGFATRQVGNMTKPTTIIEVNGD---TVIIKTQSTFKNTEISFKLGVEFDETTADDRKVK 81
Query: 59 SVITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
S++T+DG + H+QK + +ET ++R D ++ +TLT VCTR Y+
Sbjct: 82 SIVTLDGGKLVHVQKWNGQETSLVREMVDGKLILTLTHGTAVCTRTYE 129
>pdb|2A0A|A Chain A, Solution Structure Of Der F 13, Group 13 Allergen From
House Dust Mites
Length = 131
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VG + + ++ P E+ ++ Y S STFKN KFK+GEEF+E+ DG++VK+V
Sbjct: 25 VGFMVKTAAKTLKPTFEVAIEND-QYIFRSLSTFKNTEAKFKLGEEFEEDRADGKRVKTV 83
Query: 61 ITIDGDT-MTHIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTRIYKPL 107
I +GD Q GDKE KIIR F+ DEV +T + D + R YK +
Sbjct: 84 IQKEGDNKFVQTQFGDKEVKIIREFNGDEVVVTASCDGVTSVRTYKRI 131
>pdb|1O8V|A Chain A, The Crystal Structure Of Echinococcus Granulosus
Fatty-Acid-Binding Protein 1
Length = 134
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 63/107 (58%), Gaps = 5/107 (4%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
V +TRK+G V P L + G Y + S STFK FK+GE+F E TPD R+V S+
Sbjct: 26 VDFVTRKMGNLVKPNLIVTDLGGGKYKMRSESTFKTTEXSFKLGEKFKEVTPDSREVASL 85
Query: 61 ITIDGDTMTHIQKGDKETKII---RVFSDDEVKMTLTVDDIVCTRIY 104
IT++ M H Q D +TK+ RV +E+K T+ VD++VC R Y
Sbjct: 86 ITVENGVMKHEQ--DDKTKVTYIERVVEGNELKATVKVDEVVCVRTY 130
>pdb|1G74|A Chain A, Toward Changing Specificity: Adipocyte Lipid Binding
Protein Mutant, Oleic Acid Bound Form
pdb|1G7N|A Chain A, Toward Changing Specificity: Adipocyte Lipid Binding
Protein Mutant, Apo Form
Length = 131
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 63/108 (58%), Gaps = 6/108 (5%)
Query: 1 VGLITRKVGASVSP--VLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
VG TRKV P ++ + D T+ S STFKN I FK+G EFDEET DGRKVK
Sbjct: 25 VGFATRKVAGMAKPNMIISVNGD---LVTIRSESTFKNTEISFKLGVEFDEETVDGRKVK 81
Query: 59 SVITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
S+IT+DG + +QK D K T I R D++ + + + TR+Y+
Sbjct: 82 SIITLDGGALVQVQKWDGKSTTIKRKRDGDKLVVECVMKGVTSTRVYE 129
>pdb|4A8Z|A Chain A, Human Myelin P2 Protein, K112q Mutant
Length = 133
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VGL TRK+G P + + K T+ + STFKN I FK+G+EF+E T D RK KS+
Sbjct: 27 VGLATRKLGNLAKPTVIISKKGD-IITIRTESTFKNTEISFKLGQEFEETTADNRKTKSI 85
Query: 61 ITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYKPL 107
+T+ ++ +Q+ D KET I R + ++ + +VCTRIY+ +
Sbjct: 86 VTLQRGSLNQVQRWDGKETTIKRKLVNGQMVAECKMKGVVCTRIYEKV 133
>pdb|4A1H|A Chain A, Human Myelin P2 Protein, K45s Mutant
pdb|4A1H|B Chain B, Human Myelin P2 Protein, K45s Mutant
pdb|4A1H|C Chain C, Human Myelin P2 Protein, K45s Mutant
Length = 133
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VGL TRK+G P + + K T+ + STFKN I FK+G+EF+E T D RK KS+
Sbjct: 27 VGLATRKLGNLAKPTVIISKSGD-IITIRTESTFKNTEISFKLGQEFEETTADNRKTKSI 85
Query: 61 ITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYKPL 107
+T+ ++ +Q+ D KET I R + ++ + +VCTRIY+ +
Sbjct: 86 VTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKMKGVVCTRIYEKV 133
>pdb|2WUT|A Chain A, Crystal Structure Of Human Myelin Protein P2 In Complex
With Palmitate
Length = 133
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VGL TRK+G P + + K T+ + STFKN I FK+G+EF+E T D RK KS+
Sbjct: 27 VGLATRKLGNLAKPTVIISKKGD-IITIRTESTFKNTEISFKLGQEFEETTADNRKTKSI 85
Query: 61 ITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYKPL 107
+T+ ++ +Q+ D KET I R + ++ + +VCTRIY+ +
Sbjct: 86 VTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKMKGVVCTRIYEKV 133
>pdb|3NR3|A Chain A, Crystal Structure Of Human Peripheral Myelin Protein 2
Length = 153
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VGL TRK+G P + + K T+ + STFKN I FK+G+EF+E T D RK KS+
Sbjct: 47 VGLATRKLGNLAKPTVIISKKGD-IITIRTESTFKNTEISFKLGQEFEETTADNRKTKSI 105
Query: 61 ITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYKPL 107
+T+ ++ +Q+ D KET I R + ++ + +VCTRIY+ +
Sbjct: 106 VTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKMKGVVCTRIYEKV 153
>pdb|4A1Y|A Chain A, Human Myelin P2 Protein, K65q Mutant
pdb|4A1Y|B Chain B, Human Myelin P2 Protein, K65q Mutant
pdb|4A1Y|C Chain C, Human Myelin P2 Protein, K65q Mutant
pdb|4A1Y|D Chain D, Human Myelin P2 Protein, K65q Mutant
Length = 133
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VGL TRK+G P + + K T+ + STFKN I F++G+EF+E T D RK KS+
Sbjct: 27 VGLATRKLGNLAKPTVIISKKGD-IITIRTESTFKNTEISFQLGQEFEETTADNRKTKSI 85
Query: 61 ITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYKPL 107
+T+ ++ +Q+ D KET I R + ++ + +VCTRIY+ +
Sbjct: 86 VTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKMKGVVCTRIYEKV 133
>pdb|1YIV|A Chain A, Structure Of Myelin P2 Protein From Equine Spinal Cord
Length = 131
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VGL TRK+G P + + K T+ + S FKN I FK+G+EFDE T D RK KS
Sbjct: 25 VGLATRKLGNLAKPTVIISKKGD-VITIRTESGFKNTEISFKLGQEFDETTADNRKAKST 83
Query: 61 ITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYKPL 107
+T+ + +QK + ET I R D ++ + + +VCTRIY+ +
Sbjct: 84 VTLAAGALNQVQKWNGNETTIKRKLVDGKMVVECKMASVVCTRIYEKV 131
>pdb|3P6C|A Chain A, Human Adipocyte Lipid-Binding Protein Fabp4 In Complex
With Citric Acid
pdb|3P6D|A Chain A, Human Adipocyte Lipid-Binding Protein Fabp4 In Complex
With 3-(4- Methoxy-3-Methylphenyl) Propionic Acid
pdb|3P6E|A Chain A, Human Adipocyte Lipid-Binding Protein Fabp4 In Complex
With 3-(4- Methoxyphenyl) Propionic Acid
pdb|3P6F|A Chain A, Human Adipocyte Lipid-Binding Protein Fabp4 In Complex
With (S)-3- Phenyl Butyric Acid
pdb|3P6G|A Chain A, Human Adipocyte Lipid-Binding Protein Fabp4 In Complex
With (R)- Ibuprofen
pdb|3P6H|A Chain A, Human Adipocyte Lipid-Binding Protein Fabp4 In Complex
With (S)- Ibuprofen
pdb|3RZY|A Chain A, Human Adipocyte Lipid-Binding Protein Fabp4, Apo Form At
1.08 Ang Resolution
Length = 139
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Query: 1 VGLITRKVGASVSP--VLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
VG TRKV P ++ + D T+ S STFKN I F +G+EFDE T D RKVK
Sbjct: 33 VGFATRKVAGMAKPNMIISVNGD---VITIKSESTFKNTEISFILGQEFDEVTADDRKVK 89
Query: 59 SVITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
S IT+DG + H+QK D K T I R DD++ + + + TR+Y+
Sbjct: 90 STITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVMKGVTSTRVYE 137
>pdb|1TOU|A Chain A, Crystal Structure Of Human Adipocyte Fatty Acid Binding
Protein In Complex With A Non-Covalent Ligand
pdb|1TOW|A Chain A, Crystal Structure Of Human Adipocyte Fatty Acid Binding
Protein In Complex With A Carboxylic Acid Ligand
pdb|2NNQ|A Chain A, Crystal Structure Of Human Adipocyte Fatty Acid Binding
Protein In Complex With
((2'-(5-Ethyl-3,4-Diphenyl-1h-Pyrazol-1-Yl)-3-
Biphenylyl)oxy)acetic Acid
pdb|3FR2|A Chain A, N-Benzyl-Indolo Carboxylic Acids: Design And Synthesis Of
Potent And Selective Adipocyte Fatty-Acid Binding
Protein (A-Fabp) Inhibitors
pdb|3FR5|A Chain A, N-Benzyl-Indolo Carboxylic Acids: Design And Synthesis Of
Potent And Selective Adipocyte Fatty-Acid Binding
Protein (A-Fabp) Inhibitors
Length = 131
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Query: 1 VGLITRKVGASVSP--VLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
VG TRKV P ++ + D T+ S STFKN I F +G+EFDE T D RKVK
Sbjct: 25 VGFATRKVAGMAKPNMIISVNGD---VITIKSESTFKNTEISFILGQEFDEVTADDRKVK 81
Query: 59 SVITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
S IT+DG + H+QK D K T I R DD++ + + + TR+Y+
Sbjct: 82 STITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVMKGVTSTRVYE 129
>pdb|2HNX|A Chain A, Crystal Structure Of Ap2
Length = 136
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Query: 1 VGLITRKVGASVSP--VLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
VG TRKV P ++ + D T+ S STFKN I F +G+EFDE T D RKVK
Sbjct: 30 VGFATRKVAGMAKPNMIISVNGD---VITIKSESTFKNTEISFILGQEFDEVTADDRKVK 86
Query: 59 SVITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
S IT+DG + H+QK D K T I R DD++ + + + TR+Y+
Sbjct: 87 STITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVMKGVTSTRVYE 134
>pdb|3FR4|A Chain A, N-Benzyl-Indolo Carboxylic Acids: Design And Synthesis Of
Potent And Selective Adipocyte Fatty-Acid Binding
Protein (A-Fabp) Inhibitors
Length = 132
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Query: 1 VGLITRKVGASVSP--VLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
VG TRKV P ++ + D T+ S STFKN I F +G+EFDE T D RKVK
Sbjct: 26 VGFATRKVAGMAKPNMIISVNGD---VITIKSESTFKNTEISFILGQEFDEVTADDRKVK 82
Query: 59 SVITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
S IT+DG + H+QK D K T I R DD++ + + + TR+Y+
Sbjct: 83 STITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVMKGVTSTRVYE 130
>pdb|3Q6L|A Chain A, Crystal Structure Of Human Adipocyte Fatty Acid Binding
Protein (Fabp4) At 1.4 Ang. Resolution
Length = 152
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Query: 1 VGLITRKVGASVSP--VLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
VG TRKV P ++ + D T+ S STFKN I F +G+EFDE T D RKVK
Sbjct: 46 VGFATRKVAGMAKPNMIISVNGD---VITIKSESTFKNTEISFILGQEFDEVTADDRKVK 102
Query: 59 SVITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
S IT+DG + H+QK D K T I R DD++ + + + TR+Y+
Sbjct: 103 STITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVMKGVTSTRVYE 150
>pdb|1PMP|A Chain A, Crystallographic Studies On A Family Of Cellular
Lipophilic Transport Proteins. Refinement Of P2 Myelin
Protein And The Structure Determination And Refinement
Of Cellular Retinol-binding Protein In Complex With
All-trans-retinol
pdb|1PMP|B Chain B, Crystallographic Studies On A Family Of Cellular
Lipophilic Transport Proteins. Refinement Of P2 Myelin
Protein And The Structure Determination And Refinement
Of Cellular Retinol-binding Protein In Complex With
All-trans-retinol
pdb|1PMP|C Chain C, Crystallographic Studies On A Family Of Cellular
Lipophilic Transport Proteins. Refinement Of P2 Myelin
Protein And The Structure Determination And Refinement
Of Cellular Retinol-binding Protein In Complex With
All-trans-retinol
Length = 131
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VGL TRK+G P + + K T+ + S FKN I FK+G+EF+E T D RK KS
Sbjct: 25 VGLATRKLGNLAKPRVIISKKGD-IITIRTESPFKNTEISFKLGQEFEETTADNRKTKST 83
Query: 61 ITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYKPL 107
+T+ ++ +QK + ET I R D ++ + + D+VCTRIY+ +
Sbjct: 84 VTLARGSLNQVQKWNGNETTIKRKLVDGKMVVECKMKDVVCTRIYEKV 131
>pdb|4A60|A Chain A, Crystal Structure Of Human Testis-Specific Fatty Acid
Binding Protein 9 (Fabp9)
Length = 154
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
V R + V P + + D T+ + S+F++ I FK+GEEFDE T D RKVKS
Sbjct: 48 VNFAARNMAGLVKPTVTISVDGK-MMTIRTESSFQDTKISFKLGEEFDETTADNRKVKST 106
Query: 61 ITIDGDTMTHIQKG-DKETKIIRVFSDDEVKMTLTVDDIVCTRIYKPL 107
IT++ +M H+QK KET I R D+++ + +++IV TRIY+ +
Sbjct: 107 ITLENGSMIHVQKWLGKETTIKRKIVDEKMVVECKMNNIVSTRIYEKV 154
>pdb|2POA|A Chain A, Schistosoma Mansoni Sm14 Fatty Acid-Binding Protein:
Improvement Of Protein Stability By Substitution Of The
Single Cys62 Residue
Length = 133
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
V TR++G +V+P + D T+ + STFKN ++ FK GEEFDE+T DGR VKSV
Sbjct: 25 VSWATRQIGNTVTPTVTFTMD-GDKMTMLTESTFKNLSVTFKFGEEFDEKTSDGRNVKSV 83
Query: 61 ITIDGDT-MTHIQKGDKETK-IIRVFSDDEVKMTLTVDDIVCTRIYKPL 107
+ + ++ +T Q K T I+R D +K T+TV D+ R YK L
Sbjct: 84 VEKNSESKLTQTQVDPKNTTVIVREVDGDTMKTTVTVGDVTAIRNYKRL 132
>pdb|2QM9|A Chain A, Troglitazone Bound To Fatty Acid Binding Protein 4
pdb|2QM9|B Chain B, Troglitazone Bound To Fatty Acid Binding Protein 4
pdb|2Q9S|A Chain A, Linoleic Acid Bound To Fatty Acid Binding Protein 4
Length = 155
Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 1 VGLITRKVGASVSP--VLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
VG TRKV P ++ + D T+ S STFKN I FK+G EFDE T D RKVK
Sbjct: 49 VGFATRKVAGMAKPNMIISVNGD---LVTIRSESTFKNTEISFKLGVEFDEITADDRKVK 105
Query: 59 SVITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
S+IT+DG + +QK D K T I R D++ + + + TR+Y+
Sbjct: 106 SIITLDGGALVQVQKWDGKSTTIKRKRDGDKLVVECVMKGVTSTRVYE 153
>pdb|2ANS|A Chain A, Adipocyte Lipid Binding Protein Complexed With
1-anilino-8-naphthalene Sulfonate
pdb|2ANS|B Chain B, Adipocyte Lipid Binding Protein Complexed With
1-anilino-8-naphthalene Sulfonate
pdb|1ADL|A Chain A, Adipocyte Lipid Binding Protein Complexed With Arachidonic
Acid: X-Ray Crystallographic And Titration Calorimetry
Studies
pdb|1ALB|A Chain A, Crystal Structure Of Recombinant Murine Adipocyte Lipid-
Binding Protein
pdb|1LIB|A Chain A, The Adipocyte Lipid-Binding Protein At 1.6 Angstroms
Resolution: Crystal Structures Of The Apoprotein And
With Bound Saturated And Unsaturated Fatty Acids
pdb|1LIC|A Chain A, X-Ray Crystallographic Structures Of Adipocyte Lipid
Binding Protein Complexed With Palmitate And
Hexadecanesulfonic Acid. Properties Of Cavity Binding
Sites.
pdb|1LID|A Chain A, The Adipocyte Lipid-Binding Protein At 1.6 Angstroms
Resolution: Crystal Structures Of The Apoprotein And
With Bound Saturated And Unsaturated Fatty Acids
pdb|1LIF|A Chain A, The Adipocyte Lipid-Binding Protein At 1.6 Angstroms
Resolution: Crystal Structures Of The Apoprotein And
With Bound Saturated And Unsaturated Fatty Acids
pdb|3HK1|A Chain A, Identification And Characterization Of A Small Molecule
Inhibitor Of Fatty Acid Binding Proteins
pdb|3JSQ|A Chain A, Crystal Structure Of Adipocyte Fatty Acid Binding Protein
Non- Covalently Modified With 4-Hydroxy-2-Nonenal
Length = 131
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 1 VGLITRKVGASVSP--VLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
VG TRKV P ++ + D T+ S STFKN I FK+G EFDE T D RKVK
Sbjct: 25 VGFATRKVAGMAKPNMIISVNGD---LVTIRSESTFKNTEISFKLGVEFDEITADDRKVK 81
Query: 59 SVITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
S+IT+DG + +QK D K T I R D++ + + + TR+Y+
Sbjct: 82 SIITLDGGALVQVQKWDGKSTTIKRKRDGDKLVVECVMKGVTSTRVYE 129
>pdb|1A2D|A Chain A, Pyridoxamine Modified Murine Adipocyte Lipid Binding
Protein
pdb|1A2D|B Chain B, Pyridoxamine Modified Murine Adipocyte Lipid Binding
Protein
pdb|1A18|A Chain A, Phenanthroline Modified Murine Adipocyte Lipid Binding
Protein
pdb|3JS1|A Chain A, Crystal Structure Of Adipocyte Fatty Acid Binding Protein
Covalently Modified With 4-Hydroxy-2-Nonenal
pdb|3JS1|B Chain B, Crystal Structure Of Adipocyte Fatty Acid Binding Protein
Covalently Modified With 4-Hydroxy-2-Nonenal
pdb|1LIE|A Chain A, X-Ray Crystallographic Structures Of Adipocyte Lipid
Binding Protein Complexed With Palmitate And
Hexadecanesulfonic Acid. Properties Of Cavity Binding
Sites
Length = 131
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 1 VGLITRKVGASVSP--VLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
VG TRKV P ++ + D T+ S STFKN I FK+G EFDE T D RKVK
Sbjct: 25 VGFATRKVAGMAKPNMIISVNGD---LVTIRSESTFKNTEISFKLGVEFDEITADDRKVK 81
Query: 59 SVITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
S+IT+DG + +QK D K T I R D++ + + + TR+Y+
Sbjct: 82 SIITLDGGALVQVQKWDGKSTTIKRKRDGDKLVVEXVMKGVTSTRVYE 129
>pdb|1VYF|A Chain A, Schistosoma Mansoni Fatty Acid Binding Protein In Complex
With Oleic Acid
pdb|1VYG|A Chain A, Schistosoma Mansoni Fatty Acid Binding Protein In Complex
With Arachidonic Acid
Length = 135
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
V TR++G +V+P + D T+ + STFKN + FK GEEFDE+T DGR VKSV
Sbjct: 27 VSWATRQIGNTVTPTVTFTMDGD-KMTMLTESTFKNLSCTFKFGEEFDEKTSDGRNVKSV 85
Query: 61 ITIDGDT-MTHIQKGDKETK-IIRVFSDDEVKMTLTVDDIVCTRIYKPL 107
+ + ++ +T Q K T I+R D +K T+TV D+ R YK L
Sbjct: 86 VEKNSESKLTQTQVDPKNTTVIVREVDGDTMKTTVTVGDVTAIRNYKRL 134
>pdb|1XCA|A Chain A, Apo-Cellular Retinoic Acid Binding Protein Ii
pdb|1XCA|B Chain B, Apo-Cellular Retinoic Acid Binding Protein Ii
pdb|1BM5|A Chain A, The Solution Structure Of A Site-Directed Mutant (R111m)
Of Human Cellular Retionic Acid Binding Protein-Type Ii,
Nmr, 31 Structures
Length = 137
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 68/112 (60%), Gaps = 9/112 (8%)
Query: 1 VGLITRK--VGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
V ++ RK V A+ P +E+ K + T+ + +++T + I FK+GEEF+E+T DGR K
Sbjct: 24 VNVMLRKIAVAAASKPAVEI-KQEGDTFYIKTSTTVRTTEINFKVGEEFEEQTVDGRPCK 82
Query: 59 SVITIDGDT-MTHIQK-----GDKETKIIRVFSDDEVKMTLTVDDIVCTRIY 104
S++ + + M QK G K + + + +D E+ +T+T DD+VCTR+Y
Sbjct: 83 SLVKWESENKMVCEQKLLKGEGPKTSWTMELTNDGELILTMTADDVVCTRVY 134
>pdb|1LPJ|A Chain A, Human Crbp Iv
Length = 133
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETP--DGRKVK 58
+ TRK+ + P +E++ ++T+H+NS+ +N+ +KFK+GEEFDE+ D RK K
Sbjct: 25 IDFATRKIAKLLKPQKVIEQNGD-SFTIHTNSSLRNYFVKFKVGEEFDEDNRGLDNRKCK 83
Query: 59 SVITIDGDTMTHIQKGDKETK-IIRVFSDDEVKMTLTVDDIVCTRIYK 105
S++ D D +T IQKG+K+ + D++ + + + VC + ++
Sbjct: 84 SLVIWDNDRLTCIQKGEKKNRGWTHWIEGDKLHLEMFCEGQVCKQTFQ 131
>pdb|3CR6|A Chain A, Crystal Structure Of The R132k:r111l:a32e Mutant Of
Cellular Retinoic Acid Binding Protein Type Ii Complexed
With C15-Aldehyde (A Retinal Analog) At 1.22 Anstrom
Resolution.
pdb|3FEN|A Chain A, Crystal Structure Of The R132k:r111l:a32e Mutant Of
Cellular Retinoic Acid-Binding Protein Ii At 1.56
Anstrom Resolution
pdb|3FEN|B Chain B, Crystal Structure Of The R132k:r111l:a32e Mutant Of
Cellular Retinoic Acid-Binding Protein Ii At 1.56
Anstrom Resolution
Length = 137
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 68/112 (60%), Gaps = 9/112 (8%)
Query: 1 VGLITRK--VGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
V ++ RK V A+ P +E+ K + T+ + +++T + I FK+GEEF+E+T DGR K
Sbjct: 24 VNVMLRKIEVAAASKPAVEI-KQEGDTFYIKTSTTVRTTEINFKVGEEFEEQTVDGRPCK 82
Query: 59 SVITIDGDT-MTHIQK-----GDKETKIIRVFSDDEVKMTLTVDDIVCTRIY 104
S++ + + M QK G K + + + +D E+ +T+T DD+VCT++Y
Sbjct: 83 SLVKWESENKMVCEQKLLKGEGPKTSWTLELTNDGELILTMTADDVVCTKVY 134
>pdb|1EII|A Chain A, Nmr Structure Of Holo Cellular Retinol-Binding Protein Ii
pdb|1B4M|A Chain A, Nmr Structure Of Apo Cellular Retinol-Binding Protein Ii,
24 Structures
pdb|1OPA|A Chain A, The Crystal Structures Of Holo-And Apo-Cellular Retinol
Binding Protein Ii
pdb|1OPA|B Chain B, The Crystal Structures Of Holo-And Apo-Cellular Retinol
Binding Protein Ii
pdb|1OPB|A Chain A, The Crystal Structures Of Holo-and Apo-cellular Retinol
Binding Protein Ii
pdb|1OPB|B Chain B, The Crystal Structures Of Holo-and Apo-cellular Retinol
Binding Protein Ii
pdb|1OPB|C Chain C, The Crystal Structures Of Holo-and Apo-cellular Retinol
Binding Protein Ii
pdb|1OPB|D Chain D, The Crystal Structures Of Holo-and Apo-cellular Retinol
Binding Protein Ii
Length = 134
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 66/109 (60%), Gaps = 4/109 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETP--DGRKVK 58
+ TRK+ ++ ++ D + +NSTF+N+ + F +G EFDE T DGR VK
Sbjct: 26 IDFATRKIAVRLTQT-KIIVQDGDNFKTKTNSTFRNYDLDFTVGVEFDEHTKGLDGRNVK 84
Query: 59 SVITIDGDTMTHIQKGDKETKIIRVFSD-DEVKMTLTVDDIVCTRIYKP 106
+++T +G+T+ +QKG+KE + + + + D++ + LT D VC +++K
Sbjct: 85 TLVTWEGNTLVCVQKGEKENRGWKQWVEGDKLYLELTCGDQVCRQVFKK 133
>pdb|2FRS|A Chain A, Crystal Structure Of The F15w Mutant Of Apo-Cellular
Retinoic Acid Binding Protein Type Ii At 1.51 Angstroms
Resolution
pdb|2FRS|B Chain B, Crystal Structure Of The F15w Mutant Of Apo-Cellular
Retinoic Acid Binding Protein Type Ii At 1.51 Angstroms
Resolution
Length = 137
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 67/112 (59%), Gaps = 9/112 (8%)
Query: 1 VGLITRK--VGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
V ++ RK V A+ P +E+ K + T+ + +++T + I FK+GEEF+E+T DGR K
Sbjct: 24 VNVMLRKIAVAAASKPAVEI-KQEGDTFYIKTSTTVRTTEINFKVGEEFEEQTVDGRPCK 82
Query: 59 SVITIDGDT-MTHIQK-----GDKETKIIRVFSDDEVKMTLTVDDIVCTRIY 104
S++ + + M QK G K + + +D E+ +T+T DD+VCTR+Y
Sbjct: 83 SLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGELILTMTADDVVCTRVY 134
>pdb|2CBS|A Chain A, Cellular Retinoic Acid Binding Protein Ii In Complex With
A Synthetic Retinoic Acid (Ro-13 6307)
pdb|3CBS|A Chain A, Cellular Retinoic Acid Binding Protein Ii In Complex With
A Synthetic Retinoic Acid (Ro-12 7310)
pdb|2FR3|A Chain A, Crystal Structure Of Cellular Retinoic Acid Binding
Protein Type Ii In Complex With All-Trans-Retinoic Acid
At 1.48 Angstroms Resolution
pdb|2FS6|A Chain A, Crystal Structure Of Apo-Cellular Retinoic Acid Binding
Protein Type Ii At 1.35 Angstroms Resolution
pdb|2FS6|B Chain B, Crystal Structure Of Apo-Cellular Retinoic Acid Binding
Protein Type Ii At 1.35 Angstroms Resolution
pdb|2FS7|A Chain A, Crystal Structure Of Apo-Cellular Retinoic Acid Binding
Protein Type Ii At 1.55 Angstroms Resolution
pdb|2FS7|B Chain B, Crystal Structure Of Apo-Cellular Retinoic Acid Binding
Protein Type Ii At 1.55 Angstroms Resolution
pdb|1CBQ|A Chain A, Crystal Structure Of Cellular Retinoic-Acid-Binding
Proteins I And Ii In Complex With All-Trans-Retinoic
Acid And A Synthetic Retinoid
pdb|1CBS|A Chain A, Crystal Structure Of Cellular Retinoic-Acid-Binding
Proteins I And Ii In Complex With All-Trans-Retinoic
Acid And A Synthetic Retinoid
pdb|1BLR|A Chain A, Nmr Solution Structure Of Human Cellular Retinoic Acid
Binding Protein-Type Ii, 22 Structures
Length = 137
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 67/112 (59%), Gaps = 9/112 (8%)
Query: 1 VGLITRK--VGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
V ++ RK V A+ P +E+ K + T+ + +++T + I FK+GEEF+E+T DGR K
Sbjct: 24 VNVMLRKIAVAAASKPAVEI-KQEGDTFYIKTSTTVRTTEINFKVGEEFEEQTVDGRPCK 82
Query: 59 SVITIDGDT-MTHIQK-----GDKETKIIRVFSDDEVKMTLTVDDIVCTRIY 104
S++ + + M QK G K + + +D E+ +T+T DD+VCTR+Y
Sbjct: 83 SLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGELILTMTADDVVCTRVY 134
>pdb|3F9D|A Chain A, Crystal Structure Of The R132k:r111l:t54e Mutant Of
Cellular Retinoic Acid-Binding Protein Ii Complexed With
C15- Aldehyde (A Retinal Analog) At 2.00 Angstrom
Resolution
pdb|3F9D|B Chain B, Crystal Structure Of The R132k:r111l:t54e Mutant Of
Cellular Retinoic Acid-Binding Protein Ii Complexed With
C15- Aldehyde (A Retinal Analog) At 2.00 Angstrom
Resolution
pdb|3FEL|A Chain A, Crystal Structure Of The R132k:r111l:t54e Mutant Of
Cellular Retinoic Acid-Binding Protein Ii At 1.85
Anstrom Resolution
pdb|3FEL|B Chain B, Crystal Structure Of The R132k:r111l:t54e Mutant Of
Cellular Retinoic Acid-Binding Protein Ii At 1.85
Anstrom Resolution
Length = 137
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 67/112 (59%), Gaps = 9/112 (8%)
Query: 1 VGLITRK--VGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
V ++ RK V A+ P +E+ K + T+ + ++T + I FK+GEEF+E+T DGR K
Sbjct: 24 VNVMLRKIAVAAASKPAVEI-KQEGDTFYIKESTTVRTTEINFKVGEEFEEQTVDGRPCK 82
Query: 59 SVITIDGDT-MTHIQK-----GDKETKIIRVFSDDEVKMTLTVDDIVCTRIY 104
S++ + + M QK G K + + + +D E+ +T+T DD+VCT++Y
Sbjct: 83 SLVKWESENKMVCEQKLLKGEGPKTSWTLELTNDGELILTMTADDVVCTKVY 134
>pdb|1CBR|A Chain A, Crystal Structure Of Cellular Retinoic-Acid-Binding
Proteins I And Ii In Complex With All-Trans-Retinoic
Acid And A Synthetic Retinoid
pdb|1CBR|B Chain B, Crystal Structure Of Cellular Retinoic-Acid-Binding
Proteins I And Ii In Complex With All-Trans-Retinoic
Acid And A Synthetic Retinoid
pdb|2CBR|A Chain A, Cellular Retinoic Acid Binding Protein I In Complex With A
Retinobenzoic Acid (Am80)
pdb|1CBI|A Chain A, Apo-Cellular Retinoic Acid Binding Protein I
pdb|1CBI|B Chain B, Apo-Cellular Retinoic Acid Binding Protein I
Length = 136
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 65/111 (58%), Gaps = 8/111 (7%)
Query: 1 VGLITRKVG--ASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
V + RKV A+ P +E+ +D Y + +++T + I FK+GE F+EET DGRK +
Sbjct: 24 VNAMLRKVAVAAASKPHVEIRQDGDQFY-IKTSTTVRTTEINFKVGEGFEEETVDGRKCR 82
Query: 59 SVITIDGDTMTH----IQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIY 104
S+ T + + H + +GD +T R ++DE+ +T DD+VCTRIY
Sbjct: 83 SLPTWENENKIHCTQTLLEGDGPKTYWTRELANDELILTFGADDVVCTRIY 133
>pdb|2G7B|A Chain A, Crystal Structure Of The R132k:r111l:l121e Mutant Of
Cellular Retinoic Acid Binding Protein Type Ii In
Complex With All-trans-retinal At 1.18 Angstroms
Resolution
pdb|3D97|A Chain A, Crystal Structure Of The R132k:r111l:l121e Mutant Of Apo-
Cellular Retinoic Acid Binding Protein Type Ii At 1.50
Angstroms Resolution
pdb|3D97|B Chain B, Crystal Structure Of The R132k:r111l:l121e Mutant Of Apo-
Cellular Retinoic Acid Binding Protein Type Ii At 1.50
Angstroms Resolution
Length = 137
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 67/112 (59%), Gaps = 9/112 (8%)
Query: 1 VGLITRK--VGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
V ++ RK V A+ P +E+ K + T+ + +++T + I FK+GEEF+E+T DGR K
Sbjct: 24 VNVMLRKIAVAAASKPAVEI-KQEGDTFYIKTSTTVRTTEINFKVGEEFEEQTVDGRPCK 82
Query: 59 SVITIDGDT-MTHIQK-----GDKETKIIRVFSDDEVKMTLTVDDIVCTRIY 104
S++ + + M QK G K + + + +D E+ T+T DD+VCT++Y
Sbjct: 83 SLVKWESENKMVCEQKLLKGEGPKTSWTLELTNDGELIETMTADDVVCTKVY 134
>pdb|1AB0|A Chain A, C1gV32DF57H MUTANT OF MURINE ADIPOCYTE LIPID BINDING
Protein At Ph 4.5
Length = 131
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
Query: 1 VGLITRKVGASVSP--VLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
VG TRK P ++ + D T+ S ST KN I FK+G EFDE T D RKVK
Sbjct: 25 VGFATRKDAGMAKPNMIISVNGD---LVTIRSESTHKNTEISFKLGVEFDEITADDRKVK 81
Query: 59 SVITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
S+IT+DG + +QK D K T I R D++ + + + TR+Y+
Sbjct: 82 SIITLDGGALVQVQKWDGKSTTIKRKRDGDKLVVECVMKGVTSTRVYE 129
>pdb|3FA7|A Chain A, Crystal Structure Of The Apo R132k:r111l:l121e:r59e Mutant
Of Cellular Retinoic Acid-Binding Protein Ii At 1.90
Angstrom Resolution
pdb|3FA7|B Chain B, Crystal Structure Of The Apo R132k:r111l:l121e:r59e Mutant
Of Cellular Retinoic Acid-Binding Protein Ii At 1.90
Angstrom Resolution
Length = 137
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 67/112 (59%), Gaps = 9/112 (8%)
Query: 1 VGLITRK--VGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
V ++ RK V A+ P +E+ K + T+ + +++T + I FK+GEEF+E+T DGR K
Sbjct: 24 VNVMLRKIAVAAASKPAVEI-KQEGDTFYIKTSTTVETTEINFKVGEEFEEQTVDGRPCK 82
Query: 59 SVITIDGDT-MTHIQK-----GDKETKIIRVFSDDEVKMTLTVDDIVCTRIY 104
S++ + + M QK G K + + + +D E+ T+T DD+VCT++Y
Sbjct: 83 SLVKWESENKMVCEQKLLKGEGPKTSWTLELTNDGELIETMTADDVVCTKVY 134
>pdb|1ACD|A Chain A, V32dF57H MUTANT OF MURINE ADIPOCYTE LIPID BINDING PROTEIN
Length = 131
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
Query: 1 VGLITRKVGASVSP--VLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
VG TRK P ++ + D T+ S ST KN I FK+G EFDE T D RKVK
Sbjct: 25 VGFATRKDAGMAKPNMIISVNGD---LVTIRSESTHKNTEISFKLGVEFDEITADDRKVK 81
Query: 59 SVITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
S+IT+DG + +QK D K T I R D++ + + + TR+Y+
Sbjct: 82 SIITLDGGALVQVQKWDGKSTTIKRKRDGDKLVVEXVMKGVTSTRVYE 129
>pdb|3F8A|A Chain A, Crystal Structure Of The R132k:r111l:l121e:r59w Mutant Of
Cellular Retinoic Acid-Binding Protein Type Ii Complexed
With C15-Aldehyde (A Retinal Analog) At 1.95 Anstrom
Resolution.
pdb|3FEP|A Chain A, Crystal Sturcture Of The R132k:r111l:l121e:r59w-Crabpii
Mutant Complexed With A Synthetic Ligand (Merocyanin) At
2.60 Anstrom Resolution
Length = 137
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 66/112 (58%), Gaps = 9/112 (8%)
Query: 1 VGLITRK--VGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
V ++ RK V A+ P +E+ K + T+ + +++T I FK+GEEF+E+T DGR K
Sbjct: 24 VNVMLRKIAVAAASKPAVEI-KQEGDTFYIKTSTTVWTTEINFKVGEEFEEQTVDGRPCK 82
Query: 59 SVITIDGDT-MTHIQK-----GDKETKIIRVFSDDEVKMTLTVDDIVCTRIY 104
S++ + + M QK G K + + + +D E+ T+T DD+VCT++Y
Sbjct: 83 SLVKWESENKMVCEQKLLKGEGPKTSWTLELTNDGELIETMTADDVVCTKVY 134
>pdb|3FA8|A Chain A, Crystal Structure Of The Apo R132k:y134f:r111l:l121e
Mutant Of Cellular Retinoic Acid-Binding Protein Ii At
1.78 Anstrom Resolution
pdb|3FA8|B Chain B, Crystal Structure Of The Apo R132k:y134f:r111l:l121e
Mutant Of Cellular Retinoic Acid-Binding Protein Ii At
1.78 Anstrom Resolution
Length = 137
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 67/112 (59%), Gaps = 9/112 (8%)
Query: 1 VGLITRK--VGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
V ++ RK V A+ P +E+ K + T+ + +++T + I FK+GEEF+E+T DGR K
Sbjct: 24 VNVMLRKIAVAAASKPAVEI-KQEGDTFYIKTSTTVRTTEINFKVGEEFEEQTVDGRPCK 82
Query: 59 SVITIDGDT-MTHIQK-----GDKETKIIRVFSDDEVKMTLTVDDIVCTRIY 104
S++ + + M QK G K + + + +D E+ T+T DD+VCT+++
Sbjct: 83 SLVKWESENKMVCEQKLLKGEGPKTSWTLELTNDGELIETMTADDVVCTKVF 134
>pdb|2G78|A Chain A, Crystal Structure Of The R132k:y134f Mutant Of Cellular
Retinoic Acid Binding Protein Type Ii In Complex With
All- Trans-Retinoic Acid At 1.70 Angstroms Resolution
pdb|2G79|A Chain A, Crystal Structure Of The R132k:y134f Mutant Of Cellular
Retinoic Acid Binding Protein Type Ii In Complex With
All- Trans-Retinal At 1.69 Angstroms Resolution
pdb|3D96|A Chain A, Crystal Structure Of The R132k:y134f Mutant Of
Apo-Cellular Retinoic Acid Binding Protein Type Ii At
1.71 Angstroms Resolution
pdb|3D96|B Chain B, Crystal Structure Of The R132k:y134f Mutant Of
Apo-Cellular Retinoic Acid Binding Protein Type Ii At
1.71 Angstroms Resolution
Length = 137
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 67/112 (59%), Gaps = 9/112 (8%)
Query: 1 VGLITRK--VGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
V ++ RK V A+ P +E+ K + T+ + +++T + I FK+GEEF+E+T DGR K
Sbjct: 24 VNVMLRKIAVAAASKPAVEI-KQEGDTFYIKTSTTVRTTEINFKVGEEFEEQTVDGRPCK 82
Query: 59 SVITIDGDT-MTHIQK-----GDKETKIIRVFSDDEVKMTLTVDDIVCTRIY 104
S++ + + M QK G K + + +D E+ +T+T DD+VCT+++
Sbjct: 83 SLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGELILTMTADDVVCTKVF 134
>pdb|3I17|B Chain B, Crystal Structure Of The Apo R132k:l121e Mutant Of
Cellular Retinoic Acid-Binding Protein Ii At 1.68
Anstrom Resolution
pdb|3I17|A Chain A, Crystal Structure Of The Apo R132k:l121e Mutant Of
Cellular Retinoic Acid-Binding Protein Ii At 1.68
Anstrom Resolution
Length = 137
Score = 65.1 bits (157), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 66/112 (58%), Gaps = 9/112 (8%)
Query: 1 VGLITRK--VGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
V ++ RK V A+ P +E+ K + T+ + +++T + I FK+GEEF+E+T DGR K
Sbjct: 24 VNVMLRKIAVAAASKPAVEI-KQEGDTFYIKTSTTVRTTEINFKVGEEFEEQTVDGRPCK 82
Query: 59 SVITIDGDT-MTHIQK-----GDKETKIIRVFSDDEVKMTLTVDDIVCTRIY 104
S++ + + M QK G K + + +D E+ T+T DD+VCT++Y
Sbjct: 83 SLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGELIETMTADDVVCTKVY 134
>pdb|4EXZ|A Chain A, Crystal Structure Of The Q108k:k40l Mutant Of Cellular
Retinol Binding Protein Type Ii In Complex With
All-Trans-Retinal At 1.7 Angstrom Resolution
pdb|4EXZ|B Chain B, Crystal Structure Of The Q108k:k40l Mutant Of Cellular
Retinol Binding Protein Type Ii In Complex With
All-Trans-Retinal At 1.7 Angstrom Resolution
Length = 133
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 65/109 (59%), Gaps = 4/109 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETP--DGRKVK 58
+ TRK+ ++ L +++D + + STF+N+ + F +G EFDE T D R VK
Sbjct: 25 IDFATRKIAVRLTQTLVIDQD-GDNFKTKTTSTFRNYDVDFTVGVEFDEYTKSLDNRHVK 83
Query: 59 SVITIDGDTMTHIQKGDKETKIIRVFSD-DEVKMTLTVDDIVCTRIYKP 106
+++T +GD + +QKG+KE + + + + +++ + LT D VC +++K
Sbjct: 84 ALVTWEGDVLVCVQKGEKENRGWKKWIEGNKLYLELTCGDQVCRQVFKK 132
>pdb|3FA9|A Chain A, Crystal Structure Of The Apo R132k:y134f:r111l:l121d
Mutant Of Cellular Retinoic Acid-Binding Protein Ii At
1.94 Angstrom Resolution
pdb|3FA9|B Chain B, Crystal Structure Of The Apo R132k:y134f:r111l:l121d
Mutant Of Cellular Retinoic Acid-Binding Protein Ii At
1.94 Angstrom Resolution
Length = 137
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 67/112 (59%), Gaps = 9/112 (8%)
Query: 1 VGLITRK--VGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
V ++ RK V A+ P +E+ K + T+ + +++T + I FK+GEEF+E+T DGR K
Sbjct: 24 VNVMLRKIAVAAASKPAVEI-KQEGDTFYIKTSTTVRTTEINFKVGEEFEEQTVDGRPCK 82
Query: 59 SVITIDGDT-MTHIQK-----GDKETKIIRVFSDDEVKMTLTVDDIVCTRIY 104
S++ + + M QK G K + + + +D E+ T+T DD+VCT+++
Sbjct: 83 SLVKWESENKMVCEQKLLKGEGPKTSWTLELTNDGELIDTMTADDVVCTKVF 134
>pdb|4GKC|A Chain A, Crystal Structure Of
Q108k:k40l:t51v:t53c:r58w:t29l:y19w:q4a Mutant Of
Cellular Retinol Binding Protein Ii Complex With
All-Trans-Retinal At 1.33
pdb|4GKC|B Chain B, Crystal Structure Of
Q108k:k40l:t51v:t53c:r58w:t29l:y19w:q4a Mutant Of
Cellular Retinol Binding Protein Ii Complex With
All-Trans-Retinal At 1.33
Length = 133
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Query: 6 RKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETP--DGRKVKSVITI 63
RK+ ++ L +++D + + STF N+ + F +G EFDE T D R VK+++T
Sbjct: 30 RKIAVRLTQTLVIDQD-GDNFKVKCTSTFWNYDVDFTVGVEFDEYTKSLDNRHVKALVTW 88
Query: 64 DGDTMTHIQKGDKETKIIRVFSD-DEVKMTLTVDDIVCTRIYKP 106
+GD + +QKG+KE + + + + D++ + LT D VC +++K
Sbjct: 89 EGDVLVCVQKGEKENRGWKKWIEGDKLYLELTCGDQVCRQVFKK 132
>pdb|4EEJ|A Chain A, Crystal Structure Of The
Q108k:k40l:t51v:t53c:y19w:r58w:t29l:q4r Mutant Of
Cellular Retinol Binding Protein Type Ii In Complex With
All-Trans-Retinal At 1.5 Angstrom Resolution
pdb|4EEJ|B Chain B, Crystal Structure Of The
Q108k:k40l:t51v:t53c:y19w:r58w:t29l:q4r Mutant Of
Cellular Retinol Binding Protein Type Ii In Complex With
All-Trans-Retinal At 1.5 Angstrom Resolution
Length = 133
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Query: 6 RKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETP--DGRKVKSVITI 63
RK+ ++ L +++D + + STF N+ + F +G EFDE T D R VK+++T
Sbjct: 30 RKIAVRLTQTLVIDQD-GDNFKVKCTSTFWNYDVDFTVGVEFDEYTKSLDNRHVKALVTW 88
Query: 64 DGDTMTHIQKGDKETKIIRVFSD-DEVKMTLTVDDIVCTRIYKP 106
+GD + +QKG+KE + + + + D++ + LT D VC +++K
Sbjct: 89 EGDVLVCVQKGEKENRGWKKWIEGDKLYLELTCGDQVCRQVFKK 132
>pdb|3D95|A Chain A, Crystal Structure Of The R132k:y134f:r111l:l121e:t54v
Mutant Of Apo-Cellular Retinoic Acid Binding Protein
Type Ii At 1.20 Angstroms Resolution
pdb|3D95|B Chain B, Crystal Structure Of The R132k:y134f:r111l:l121e:t54v
Mutant Of Apo-Cellular Retinoic Acid Binding Protein
Type Ii At 1.20 Angstroms Resolution
pdb|3CWK|A Chain A, Crystal Structure Of The R132k:y134f:r111l:t54v:l121e
Mutant Of Cellular Retinoic Acid Binding Protein Type Ii
In Complex With All-Trans-Retinoic Acid At 1.57
Angstroms Resolution
Length = 137
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 66/112 (58%), Gaps = 9/112 (8%)
Query: 1 VGLITRK--VGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
V ++ RK V A+ P +E+ K + T+ + ++T + I FK+GEEF+E+T DGR K
Sbjct: 24 VNVMLRKIAVAAASKPAVEI-KQEGDTFYIKVSTTVRTTEINFKVGEEFEEQTVDGRPCK 82
Query: 59 SVITIDGDT-MTHIQK-----GDKETKIIRVFSDDEVKMTLTVDDIVCTRIY 104
S++ + + M QK G K + + + +D E+ T+T DD+VCT+++
Sbjct: 83 SLVKWESENKMVCEQKLLKGEGPKTSWTLELTNDGELIETMTADDVVCTKVF 134
>pdb|4EFG|A Chain A, Crystal Structure Of The
Q108k:k40l:t51v:t53c:y19w:r58w:t29l Mutant Of Cellular
Retinol Binding Protein Type Ii In Complex With
All-Trans- Retinal At 1.58 Angstrom Resolution
pdb|4EFG|B Chain B, Crystal Structure Of The
Q108k:k40l:t51v:t53c:y19w:r58w:t29l Mutant Of Cellular
Retinol Binding Protein Type Ii In Complex With
All-Trans- Retinal At 1.58 Angstrom Resolution
Length = 133
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Query: 6 RKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETP--DGRKVKSVITI 63
RK+ ++ L +++D + + STF N+ + F +G EFDE T D R VK+++T
Sbjct: 30 RKIAVRLTQTLVIDQD-GDNFKVKCTSTFWNYDVDFTVGVEFDEYTKSLDNRHVKALVTW 88
Query: 64 DGDTMTHIQKGDKETKIIRVFSD-DEVKMTLTVDDIVCTRIYKP 106
+GD + +QKG+KE + + + + D++ + LT D VC +++K
Sbjct: 89 EGDVLVCVQKGEKENRGWKKWIEGDKLYLELTCGDQVCRQVFKK 132
>pdb|4EDE|A Chain A, Crystal Structure Of The
Q108k:k40l:t51v:t53c:y19w:r58w:t29l:a33w Mutant Of
Cellular Retinol Binding Protein Type Ii In Complex With
All-Trans-Retinal At 1.4 Angstrom Resolution
pdb|4EDE|B Chain B, Crystal Structure Of The
Q108k:k40l:t51v:t53c:y19w:r58w:t29l:a33w Mutant Of
Cellular Retinol Binding Protein Type Ii In Complex With
All-Trans-Retinal At 1.4 Angstrom Resolution
Length = 133
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Query: 6 RKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETP--DGRKVKSVITI 63
RK+ ++ L +++D + + STF N+ + F +G EFDE T D R VK+++T
Sbjct: 30 RKIWVRLTQTLVIDQD-GDNFKVKCTSTFWNYDVDFTVGVEFDEYTKSLDNRHVKALVTW 88
Query: 64 DGDTMTHIQKGDKETKIIRVFSD-DEVKMTLTVDDIVCTRIYKP 106
+GD + +QKG+KE + + + + D++ + LT D VC +++K
Sbjct: 89 EGDVLVCVQKGEKENRGWKKWIEGDKLYLELTCGDQVCRQVFKK 132
>pdb|2RCQ|A Chain A, Crystal Strucure Of Human Apo Cellular Retinol Binding
Protein Ii (Crbp-Ii)
pdb|2RCT|A Chain A, Crystal Structure Of Human Holo Cellular Retinol-Binding
Protein Ii (Crbp-Ii)
Length = 141
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 64/108 (59%), Gaps = 4/108 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETP--DGRKVK 58
+ TRK+ ++ +++D + + STF+N+ + F +G EFDE T D R VK
Sbjct: 29 IDFATRKIAVRLTQTKVIDQD-GDNFKTKTTSTFRNYDVDFTVGVEFDEYTKSLDNRHVK 87
Query: 59 SVITIDGDTMTHIQKGDKETKIIRVFSD-DEVKMTLTVDDIVCTRIYK 105
+++T +GD + +QKG+KE + + + + D++ + LT D VC +++K
Sbjct: 88 ALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLELTCGDQVCRQVFK 135
>pdb|3FA6|A Chain A, Crystal Structure Of The R132k:y134f:r111l:l121d:t54v
Mutant Of Cellular Retinoic Acid-Binding Protein Ii
Complexed With C15-Aldehyde (A Retinal Analog) At 1.54
Angstrom Resolution
pdb|3FA6|B Chain B, Crystal Structure Of The R132k:y134f:r111l:l121d:t54v
Mutant Of Cellular Retinoic Acid-Binding Protein Ii
Complexed With C15-Aldehyde (A Retinal Analog) At 1.54
Angstrom Resolution
pdb|3FEK|B Chain B, Crystal Structure Of The R132k:y134f:r111l:l121d:t54v
Mutant Of Cellular Retinoic Acid-Binding Protein Ii At
1.51 Anstrom Resolution
pdb|3FEK|A Chain A, Crystal Structure Of The R132k:y134f:r111l:l121d:t54v
Mutant Of Cellular Retinoic Acid-Binding Protein Ii At
1.51 Anstrom Resolution
Length = 137
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 66/112 (58%), Gaps = 9/112 (8%)
Query: 1 VGLITRK--VGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
V ++ RK V A+ P +E+ K + T+ + ++T + I FK+GEEF+E+T DGR K
Sbjct: 24 VNVMLRKIAVAAASKPAVEI-KQEGDTFYIKVSTTVRTTEINFKVGEEFEEQTVDGRPCK 82
Query: 59 SVITIDGDT-MTHIQK-----GDKETKIIRVFSDDEVKMTLTVDDIVCTRIY 104
S++ + + M QK G K + + + +D E+ T+T DD+VCT+++
Sbjct: 83 SLVKWESENKMVCEQKLLKGEGPKTSWTLELTNDGELIDTMTADDVVCTKVF 134
>pdb|1KQW|A Chain A, Crystal Structure Of Holo-Crbp From Zebrafish
pdb|1KQX|A Chain A, Crystal Structure Of Apo-Crbp From Zebrafish
Length = 134
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 63/110 (57%), Gaps = 8/110 (7%)
Query: 1 VGLITRKVGASV--SPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETP--DGRK 56
+ TRK+ + + V+ D T TL STF+N+ + F IGEEFDE+T D R
Sbjct: 25 IDFATRKIAVHLKQTKVIVQNGDKFETKTL---STFRNYEVNFVIGEEFDEQTKGLDNRT 81
Query: 57 VKSVITIDGDTMTHIQKGDKETKIIRVFSD-DEVKMTLTVDDIVCTRIYK 105
VK+++ DGD + +QKG+KE + + + + D + + + D VC +++K
Sbjct: 82 VKTLVKWDGDKLVCVQKGEKENRGWKQWIEGDLLHLEIHCQDKVCHQVFK 131
>pdb|1JJJ|A Chain A, Solution Structure Of Recombinant Human Epidermal-Type
Fatty Acid Binding Protein
pdb|1B56|A Chain A, Human Recombinant Epidermal Fatty Acid Binding Protein
Length = 135
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VG+ RK+GA P + D T+ + ST K +GE+F+E T DGRK ++V
Sbjct: 28 VGIALRKMGAMAKPDCIITCDGK-NLTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTV 86
Query: 61 ITI-DGDTMTHIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTRIYKPL 107
DG + H + KE+ I R D ++ + ++++ CTRIY+ +
Sbjct: 87 CNFTDGALVQHQEWDGKESTITRKLKDGKLVVECVMNNVTCTRIYEKV 134
>pdb|1GGL|A Chain A, Human Cellular Retinol Binding Protein Iii
pdb|1GGL|B Chain B, Human Cellular Retinol Binding Protein Iii
Length = 134
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 64/108 (59%), Gaps = 4/108 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEE--TPDGRKVK 58
+ L RK+ + P E+E + T+ + STF+N+ ++F +G EF+E+ + DGRK +
Sbjct: 25 ISLAVRKIALLLKPDKEIEHQGNHM-TVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRKCQ 83
Query: 59 SVITIDGDTMTHIQKGDKETKIIRVFSDDE-VKMTLTVDDIVCTRIYK 105
+++T + + + +QKG+ + R + + E + + LT D VC ++++
Sbjct: 84 TIVTWEEEHLVCVQKGEVPNRGWRHWLEGEMLYLELTARDAVCEQVFR 131
>pdb|1JBH|A Chain A, Solution Structure Of Cellular Retinol Binding Protein
Type- I In The Ligand-Free State
pdb|1KGL|A Chain A, Solution Structure Of Cellular Retinol Binding Protein
Type- I In Complex With All-Trans-Retinol
Length = 135
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 62/110 (56%), Gaps = 4/110 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETP--DGRKVK 58
V + RK+ + P E+ +D + + STF+N+ + F++G+EF+E+ D RK
Sbjct: 26 VNVALRKIANLLKPDKEIVQD-GDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCM 84
Query: 59 SVITIDGDTMTHIQKGDKETK-IIRVFSDDEVKMTLTVDDIVCTRIYKPL 107
+ ++ DGD + +QKG+KE + + DE+ + + + + C +++K +
Sbjct: 85 TTVSWDGDKLQCVQKGEKEGRGWTQWIEGDELHLEMRAEGVTCKQVFKKV 134
>pdb|1CRB|A Chain A, Crystallographic Studies On A Family Of Cellular
Lipophilic Transport Proteins. Refinement Of P2 Myelin
Protein And The Structure Determination And Refinement
Of Cellular Retinol-Binding Protein In Complex With
All-Trans-Retinol
pdb|1MX7|A Chain A, Two Homologous Rat Cellular Retinol-Binding Proteins
Differ In Local Structure And Flexibility
pdb|1MX8|A Chain A, Two Homologous Rat Cellular Retinol-Binding Proteins
Differ In Local Structure And Flexibility
Length = 134
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 62/110 (56%), Gaps = 4/110 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETP--DGRKVK 58
V + RK+ + P E+ +D + + STF+N+ + F++G+EF+E+ D RK
Sbjct: 25 VNVALRKIANLLKPDKEIVQD-GDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCM 83
Query: 59 SVITIDGDTMTHIQKGDKETK-IIRVFSDDEVKMTLTVDDIVCTRIYKPL 107
+ ++ DGD + +QKG+KE + + DE+ + + + + C +++K +
Sbjct: 84 TTVSWDGDKLQCVQKGEKEGRGWTQWIEGDELHLEMRAEGVTCKQVFKKV 133
>pdb|1MDC|A Chain A, Crystallization, Structure Determination And Least-Squares
Refinement To 1.75 Angstroms Resolution Of The
Fatty-Acid-Binding Protein Isolated From Manduca Sexta L
Length = 132
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 1 VGLITRKVGASVS--PVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
GL K+ A VS P ++E + +Y+ S + FK G EFD+ G VK
Sbjct: 23 AGLSDDKIQALVSDKPTQKMEANGD-SYSNTSTGGGGAKTVSFKSGVEFDDVIGAGDSVK 81
Query: 59 SVITIDGDTMTHIQKGDKETKIIRV-FSDDEVKMTLTVD--DIVCTRIYKP 106
S+ T+DG+ +TH+ KGD + ++ D++ +T+T D V R YK
Sbjct: 82 SMYTVDGNVVTHVVKGDAGVATFKKEYNGDDLVVTITSSNWDGVARRYYKA 132
>pdb|1T8V|A Chain A, The Nmr Structure Of D34a I-Fabp: Implications For The
Determinants Of Ligand Binding Stoichiometry
Length = 131
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
+ ++ RK+GA + L + ++ + +T+ +S F+N + F++G +F DG ++
Sbjct: 23 INVVKRKLGAHANLKLTITQEGN-KFTVKESSNFRNIDVVFELGVDFAYSLADGTELTGT 81
Query: 61 ITIDGDTMTHIQK---GDKETKIIRVFSDDEVKMTLTVDDIVCTRIYKP 106
T++G+ + K KE +R S +E+ T T + + RI+K
Sbjct: 82 WTMEGNKLVGKFKRVDNGKELIAVREISGNELIQTYTYEGVEAKRIFKK 130
>pdb|1IFC|A Chain A, Refinement Of The Structure Of Recombinant Rat Intestinal
Fatty Acid- Binding Apoprotein At 1.2 Angstroms
Resolution
Length = 132
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
+ ++ RK+GA + L + ++ + +T+ +S F+N + F++G +F DG ++
Sbjct: 24 INVVKRKLGAHDNLKLTITQEGN-KFTVKESSNFRNIDVVFELGVDFAYSLADGTELTGT 82
Query: 61 ITIDGDTMTHIQK---GDKETKIIRVFSDDEVKMTLTVDDIVCTRIYKP 106
T++G+ + K KE +R S +E+ T T + + RI+K
Sbjct: 83 WTMEGNKLVGKFKRVDNGKELIAVREISGNELIQTYTYEGVEAKRIFKK 131
>pdb|1AEL|A Chain A, Nmr Structure Of Apo Intestinal Fatty Acid-Binding
Protein, 20 Structures
pdb|1ICM|A Chain A, Escherichia Coli-Derived Rat Intestinal Fatty Acid Binding
Protein With Bound Myristate At 1.5 A Resolution And I-
Fabparg106-->gln With Bound Oleate At 1.74 A Resolution
pdb|1IFB|A Chain A, Refined Apoprotein Structure Of Rat Intestinal Fatty Acid
Binding Protein Produced In Escherichia Coli
pdb|1URE|A Chain A, Nmr Structure Of Intestinal Fatty Acid-Binding Protein
Complexed With Palmitate, 20 Structures
pdb|2IFB|A Chain A, Crystal Structure Of Rat Intestinal Fatty-acid-binding
Protein. Refinement And Analysis Of The Escherichia
Coli- Drived Protein With Bound Palmitate
pdb|3AKN|A Chain A, X-Ray Structure Of Ifabp From Human And Rat With Bound
Fluorescent Fatty Acid Analogue
Length = 131
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
+ ++ RK+GA + L + ++ + +T+ +S F+N + F++G +F DG ++
Sbjct: 23 INVVKRKLGAHDNLKLTITQEGN-KFTVKESSNFRNIDVVFELGVDFAYSLADGTELTGT 81
Query: 61 ITIDGDTMTHIQK---GDKETKIIRVFSDDEVKMTLTVDDIVCTRIYKP 106
T++G+ + K KE +R S +E+ T T + + RI+K
Sbjct: 82 WTMEGNKLVGKFKRVDNGKELIAVREISGNELIQTYTYEGVEAKRIFKK 130
>pdb|1LFO|A Chain A, Liver Fatty Acid Binding Protein-Oleate Complex
Length = 128
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 41 FKIGEEFDEETPDGRKVKSVITIDGDT-MTHIQKGDKETKIIRVFSDDEVKMTLTVDDIV 99
F +GEE + ET G KVK+V+ ++GD M KG K + F+ D + T+T+ DIV
Sbjct: 64 FTLGEEXELETMTGEKVKAVVKMEGDNKMVTTFKG---IKSVTEFNGDTITNTMTLGDIV 120
Query: 100 CTRIYKPL 107
R+ K +
Sbjct: 121 YKRVSKRI 128
>pdb|2JU3|A Chain A, Solution-State Nmr Structures Of Apo-Lfabp (Liver Fatty
Acid-Binding Protein)
pdb|2JU7|A Chain A, Solution-State Structures Of Oleate-Liganded Lfabp,
Protein Only
pdb|2JU8|A Chain A, Solution-State Structures Of Oleate-Liganded Lfabp, Major
Form Of 1:2 Protein-Ligand Complex
Length = 127
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 41 FKIGEEFDEETPDGRKVKSVITIDGDT-MTHIQKGDKETKIIRVFSDDEVKMTLTVDDIV 99
F +GEE + ET G KVK+V+ ++GD M KG K + F+ D + T+T+ DIV
Sbjct: 63 FTLGEECELETMTGEKVKAVVKMEGDNKMVTTFKG---IKSVTEFNGDTITNTMTLGDIV 119
Query: 100 CTRIYKPL 107
R+ K +
Sbjct: 120 YKRVSKRI 127
>pdb|1P6P|A Chain A, Crystal Structure Of Toad Liver Basic Fatty Acid-Binding
Protein
Length = 125
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 4/96 (4%)
Query: 7 KVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSVITIDGD 66
KV V+PV+E+E++ + + + S + + H+ F +G+E + + DG+K+K + ++G
Sbjct: 29 KVAKDVNPVIEIEQNGN-EFVVTSKTPKQTHSNSFTVGKESEITSMDGKKIKVTVQLEGG 87
Query: 67 TMTHIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTR 102
+ I K DK + I V D+ V+ +T+ TR
Sbjct: 88 KL--ICKSDKFSHIQEVNGDEMVE-KITIGSSTLTR 120
>pdb|2QO6|A Chain A, Crystal Structure Of The Glycine 55 Arginine Mutant Of
Zebrafish Liver Bile Acid-Binding Protein Complexed With
Cholic Acid
Length = 126
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 7 KVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSVITIDG- 65
K+ V PV E++++ S +T+ S + K F IG+E + T DG+K+K ++ +DG
Sbjct: 30 KLAKDVKPVTEIQQNGSD-FTITSKTPRKTVTNSFTIGKEAEITTMDGKKLKCIVKLDGG 88
Query: 66 ------DTMTHIQ 72
D +HIQ
Sbjct: 89 KLVCRTDRFSHIQ 101
>pdb|2QO4|A Chain A, Crystal Structure Of Zebrafish Liver Bile Acid-Binding
Protein Complexed With Cholic Acid
Length = 126
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 7 KVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSVITIDG- 65
K+ V PV E++++ S +T+ S + K F IG+E + T DG+K+K ++ +DG
Sbjct: 30 KLAKDVKPVTEIQQNGSD-FTITSKTPGKTVTNSFTIGKEAEITTMDGKKLKCIVKLDGG 88
Query: 66 ------DTMTHIQK 73
D +HIQ+
Sbjct: 89 KLVCRTDRFSHIQE 102
>pdb|2QO5|A Chain A, Crystal Structure Of The Cysteine 91 Threonine Mutant Of
Zebrafish Liver Bile Acid-Binding Protein Complexed With
Cholic Acid
Length = 129
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 7 KVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSVITIDG- 65
K+ V PV E++++ S +T+ S + K F IG+E + T DG+K+K ++ +DG
Sbjct: 30 KLAKDVKPVTEIQQNGSD-FTITSKTPGKTVTNSFTIGKEAEITTMDGKKLKCIVKLDGG 88
Query: 66 ------DTMTHIQK 73
D +HIQ+
Sbjct: 89 KLVTRTDRFSHIQE 102
>pdb|1ICN|A Chain A, Escherichia Coli-Derived Rat Intestinal Fatty Acid Binding
Protein With Bound Myristate At 1.5 A Resolution And I-
Fabparg106-->gln With Bound Oleate At 1.74 A Resolution
Length = 131
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
+ ++ RK+GA + L + ++ + +T+ +S F+N + F++G +F DG ++
Sbjct: 23 INVVKRKLGAHDNLKLTITQEGN-KFTVKESSNFRNIDVVFELGVDFAYSLADGTELTGT 81
Query: 61 ITIDGDTMTHIQK---GDKETKIIRVFSDDEVKMTLTVDDIVCTRIYKP 106
T++G+ + K KE ++ S +E+ T T + + RI+K
Sbjct: 82 WTMEGNKLVGKFKRVDNGKELIAVQEISGNELIQTYTYEGVEAKRIFKK 130
>pdb|1KZX|A Chain A, Solution Structure Of Human Intestinal Fatty Acid Binding
Protein With A Naturally-Occurring Single Amino Acid
Substitution (A54t)
Length = 131
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
V ++ RK+ A + L + ++ + +T+ +STF+N + F++G F+ DG +++
Sbjct: 23 VNIVKRKLAAHDNLKLTITQEGN-KFTVKESSTFRNIEVVFELGVTFNYNLADGTELRGT 81
Query: 61 ITIDGDTMT-HIQKGD--KETKIIRVFSDDEVKMTLTVDDIVCTRIYKP 106
+++G+ + ++ D E +R DE+ T + + RI+K
Sbjct: 82 WSLEGNKLIGKFKRTDNGNELNTVREIIGDELVQTYVYEGVEAKRIFKK 130
>pdb|1DC9|A Chain A, Properties And Crystal Structure Of A Beta-Barrel Folding
Mutant, V60n Intestinal Fatty Acid Binding Protein
(Ifabp)
Length = 131
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
+ ++ RK+GA + L + ++ + +T+ +S F+N F++G +F DG ++
Sbjct: 23 INVVKRKLGAHDNLKLTITQEGN-KFTVKESSNFRNIDNVFELGVDFAYSLADGTELTGT 81
Query: 61 ITIDGDTMTHIQK---GDKETKIIRVFSDDEVKMTLTVDDIVCTRIYKP 106
T++G+ + K KE +R S +E+ T T + + RI+K
Sbjct: 82 WTMEGNKLVGKFKRVDNGKELIAVREISGNELIQTYTYEGVEAKRIFKK 130
>pdb|2F73|A Chain A, Crystal Structure Of Human Fatty Acid Binding Protein 1
(Fabp1)
pdb|2F73|B Chain B, Crystal Structure Of Human Fatty Acid Binding Protein 1
(Fabp1)
pdb|2F73|C Chain C, Crystal Structure Of Human Fatty Acid Binding Protein 1
(Fabp1)
pdb|2F73|D Chain D, Crystal Structure Of Human Fatty Acid Binding Protein 1
(Fabp1)
pdb|2F73|E Chain E, Crystal Structure Of Human Fatty Acid Binding Protein 1
(Fabp1)
pdb|2F73|F Chain F, Crystal Structure Of Human Fatty Acid Binding Protein 1
(Fabp1)
pdb|2F73|G Chain G, Crystal Structure Of Human Fatty Acid Binding Protein 1
(Fabp1)
pdb|2F73|H Chain H, Crystal Structure Of Human Fatty Acid Binding Protein 1
(Fabp1)
Length = 149
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 40 KFKIGEEFDEETPDGRKVKSVITIDGDTMTHIQKGDKETKIIRVFSDDEVKMTLTVDDIV 99
+F +GEE + ET G KVK+V+ ++GD + K K + + D + T+T+ DIV
Sbjct: 84 EFTVGEECELETMTGEKVKTVVQLEGD--NKLVTTFKNIKSVTELNGDIITNTMTLGDIV 141
Query: 100 CTRIYKPL 107
RI K +
Sbjct: 142 FKRISKRI 149
>pdb|3STK|A Chain A, Crystal Structure Of Human Lfabp Complex With Two
Molecules Of Palmitic Acid (Holo-Lfabp)
pdb|3STM|X Chain X, Structure Of Human Lfabp In Complex With One Molecule Of
Palmitic Acid
pdb|3STN|A Chain A, Structure Of Human Lfabp (Apo-Lfabp)
pdb|3B2H|A Chain A, Iodide Derivative Of Human Lfabp At High Resolution
pdb|3B2J|A Chain A, Iodide Derivative Of Human Lfabp
pdb|3B2K|A Chain A, Iodide Derivative Of Human Lfabp
pdb|3B2L|A Chain A, Iodide Derivative Of Human Lfabp
pdb|3VG2|A Chain A, Iodide Derivative Of Human Lfabp
pdb|3VG3|A Chain A, Cadmium Derivative Of Human Lfabp
pdb|3VG4|A Chain A, Cadmium Derivative Of Human Lfabp
pdb|3VG5|A Chain A, Barium Derivative Of Human Lfabp
pdb|3VG6|A Chain A, Barium Derivative Of Human Lfabp
pdb|3B2I|A Chain A, Iodide Derivative Of Human Lfabp
pdb|3VG7|A Chain A, Structure Of Human Lfabp At High Resolution From S-Sad
Length = 132
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 40 KFKIGEEFDEETPDGRKVKSVITIDGDTMTHIQKGDKETKIIRVFSDDEVKMTLTVDDIV 99
+F +GEE + ET G KVK+V+ ++GD + K K + + D + T+T+ DIV
Sbjct: 65 EFTVGEECELETMTGEKVKTVVQLEGD--NKLVTTFKNIKSVTELNGDIITNTMTLGDIV 122
Query: 100 CTRIYKPL 107
RI K +
Sbjct: 123 FKRISKRI 130
>pdb|1SA8|A Chain A, The Nmr Structure Of A Stable And Compact All-Beta-Sheet
Variant Of Intestinal Fatty Acid-Binding Protein
Length = 106
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 26 YTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSVITIDGDTMTHIQK---GDKETKIIR 82
+T+ +S F+N + F++G +F DG ++ T++G+ + K KE +R
Sbjct: 22 FTVKESSNFRNIDVVFELGVDFAYSLADGTELTGTWTMEGNKLVGKFKRVDNGKELIAVR 81
Query: 83 VFSDDEVKMTLTVDDIVCTRIYKP 106
S +E+ T T + + RI+K
Sbjct: 82 EISGNELIQTYTYEGVEAKRIFKK 105
>pdb|2PY1|A Chain A, Solution Structure Of Human Liver Fatty Acid Binding
Protein
Length = 129
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 40 KFKIGEEFDEETPDGRKVKSVITIDGDTMTHIQKGDKETKIIRVFSDDEVKMTLTVDDIV 99
+F +GEE + ET G KVK+V+ ++GD + K K + + D + T+T+ DIV
Sbjct: 64 EFTVGEECELETMTGEKVKTVVQLEGD--NKLVTTFKNIKSVTELNGDIITNTMTLGDIV 121
Query: 100 CTRIYKPL 107
RI K +
Sbjct: 122 FKRISKRI 129
>pdb|2L67|A Chain A, Solution Structure Of Human Apo L-fabp
pdb|2L68|A Chain A, Solution Structure Of Human Holo L-fabp
pdb|2LKK|A Chain A, Human L-fabp In Complex With Oleate
Length = 126
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 40 KFKIGEEFDEETPDGRKVKSVITIDGDTMTHIQKGDKETKIIRVFSDDEVKMTLTVDDIV 99
+F +GEE + ET G KVK+V+ ++GD + K K + + D + T+T+ DIV
Sbjct: 61 EFTVGEECELETMTGEKVKTVVQLEGD--NKLVTTFKNIKSVTELNGDIITNTMTLGDIV 118
Query: 100 CTRIYKPL 107
RI K +
Sbjct: 119 FKRISKRI 126
>pdb|3IFB|A Chain A, Nmr Study Of Human Intestinal Fatty Acid Binding Protein
pdb|3AKM|A Chain A, X-Ray Structure Of Ifabp From Human And Rat With Bound
Fluorescent Fatty Acid Analogue
pdb|3AKM|B Chain B, X-Ray Structure Of Ifabp From Human And Rat With Bound
Fluorescent Fatty Acid Analogue
pdb|3AKM|C Chain C, X-Ray Structure Of Ifabp From Human And Rat With Bound
Fluorescent Fatty Acid Analogue
pdb|3AKM|D Chain D, X-Ray Structure Of Ifabp From Human And Rat With Bound
Fluorescent Fatty Acid Analogue
Length = 131
Score = 35.8 bits (81), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
V ++ RK+ A + L + ++ + +T+ +S F+N + F++G F+ DG +++
Sbjct: 23 VNIVKRKLAAHDNLKLTITQEGN-KFTVKESSAFRNIEVVFELGVTFNYNLADGTELRGT 81
Query: 61 ITIDGDTMT-HIQKGD--KETKIIRVFSDDEVKMTLTVDDIVCTRIYKP 106
+++G+ + ++ D E +R DE+ T + + RI+K
Sbjct: 82 WSLEGNKLIGKFKRTDNGNELNTVREIIGDELVQTYVYEGVEAKRIFKK 130
>pdb|1A57|A Chain A, The Three-Dimensional Structure Of A Helix-Less Variant Of
Intestinal Fatty Acid Binding Protein, Nmr, 20
Structures
Length = 116
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 26 YTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSVITIDGDTMTHIQK---GDKETKIIR 82
+T+ +S F+N + F++G +F DG ++ T++G+ + K KE +R
Sbjct: 32 FTVKESSNFRNIDVVFELGVDFAYSLADGTELTGTWTMEGNKLVGKFKRVDNGKELIAVR 91
Query: 83 VFSDDEVKMTLTVDDIVCTRIYKP 106
S +E+ T T + + RI+K
Sbjct: 92 EISGNELIQTYTYEGVEAKRIFKK 115
>pdb|1KZW|A Chain A, Solution Structure Of Human Intestinal Fatty Acid Binding
Protein
Length = 131
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
V ++ RK+ A + L + ++ + +T+ +S F+N + F++G F+ DG +++
Sbjct: 23 VNIVKRKLAAHDNLKLTITQEGN-KFTVKESSAFRNIEVVFELGVTFNYNLADGTELRGT 81
Query: 61 ITIDGDTMT-HIQKGD--KETKIIRVFSDDEVKMTLTVDDIVCTRIYKP 106
+++G+ + ++ D E +R DE+ T + + RI+K
Sbjct: 82 WSLEGNKLIGKFKRTDNGNELNTVREIIGDELVQTYVYEGVEAKRIFKK 130
>pdb|3ELX|A Chain A, Crystal Structure Of Apo Zebrafish Ileal Bile
Acid-Binding Protein
pdb|3ELZ|A Chain A, Crystal Structure Of Zebrafish Ileal Bile Acid-Bindin
Protein Complexed With Cholic Acid (Crystal Form A).
pdb|3ELZ|B Chain B, Crystal Structure Of Zebrafish Ileal Bile Acid-Bindin
Protein Complexed With Cholic Acid (Crystal Form A).
pdb|3ELZ|C Chain C, Crystal Structure Of Zebrafish Ileal Bile Acid-Bindin
Protein Complexed With Cholic Acid (Crystal Form A).
pdb|3EM0|A Chain A, Crystal Structure Of Zebrafish Ileal Bile Acid-bindin
Protein Complexed With Cholic Acid (crystal Form B).
pdb|3EM0|B Chain B, Crystal Structure Of Zebrafish Ileal Bile Acid-bindin
Protein Complexed With Cholic Acid (crystal Form B)
Length = 138
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 18 LEKDDSGTYTLHSNSTFKNHAI--KFKIGEEFDEETPDGRKVKSVITIDGDTMT 69
++ D T+T + + NH + KF +G+E D ET G+K K +++++G +T
Sbjct: 45 VQNGDDFTWTQYYPN---NHVVTNKFIVGKESDMETVGGKKFKGIVSMEGGKLT 95
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 23 SGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSVITIDGDTMTHIQKGD 75
SGT+T S+S++KN F I D T G K +TI+G ++T Q D
Sbjct: 56 SGTFTPSSSSSYKNLGAAFTI-RYGDGSTSQGTWGKDTVTINGVSITGQQIAD 107
>pdb|2FT9|A Chain A, Crystal Structure Of Axolotl (ambystoma Mexicanum) Liver
Bile Acid-binding Protein Bound To Cholic Acid
pdb|2FTB|A Chain A, Crystal Structure Of Axolotl (Ambystoma Mexicanum) Liver
Bile Acid-Binding Protein Bound To Oleic Acid
Length = 125
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 8 VGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSVITIDGDT 67
V ++P++E++++ + + S + ++ F IG+E + + G+K+K + ++G
Sbjct: 30 VAKDINPIIEIQQNGD-NFVVTSKTPNQSVTNSFTIGKEAEITSMGGKKIKCTVVLEGGK 88
Query: 68 MTHIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTR 102
+ + K D+ + I V ++ V+ TLTV R
Sbjct: 89 L--VSKTDQFSHIQEVKGNEMVE-TLTVGGATLIR 120
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 39 IKFKIGEEFDEETPDGRKVKSVITIDG--DTMTHIQKGDKETKIIRVFSDDEVKMTLTVD 96
+K K E E +G + KS I I D M +GD+ I + S+D++K+ +
Sbjct: 183 MKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGDERVNIFNIGSEDQIKVK-RIA 241
Query: 97 DIVCTRI 103
+IVC +
Sbjct: 242 EIVCEEL 248
>pdb|1TIC|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1TIC|B Chain B, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1LGY|A Chain A, Lipase Ii From Rhizopus Niveus
pdb|1LGY|B Chain B, Lipase Ii From Rhizopus Niveus
pdb|1LGY|C Chain C, Lipase Ii From Rhizopus Niveus
Length = 269
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 28/62 (45%)
Query: 46 EFDEETPDGRKVKSVITIDGDTMTHIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+ + PDG+ + + ++ DT ++ + DK+ I VF + D + YK
Sbjct: 42 QCQKWVPDGKIITTFTSLLSDTNGYVLRSDKQKTIYLVFRGTNSFRSAITDIVFNFSDYK 101
Query: 106 PL 107
P+
Sbjct: 102 PV 103
>pdb|1MVG|A Chain A, Nmr Solution Structure Of Chicken Liver Basic Fatty Acid
Binding Protein (Lb-Fabp)
pdb|1TVQ|A Chain A, Crystal Structure Of Apo Chicken Liver Basic Fatty Acid
Binding Protein (Or Bile Acid Binding Protein)
pdb|1TW4|A Chain A, Crystal Structure Of Chicken Liver Basic Fatty Acid
Binding Protein (Bile Acid Binding Protein) Complexed
With Cholic Acid
pdb|1TW4|B Chain B, Crystal Structure Of Chicken Liver Basic Fatty Acid
Binding Protein (Bile Acid Binding Protein) Complexed
With Cholic Acid
pdb|1ZRY|A Chain A, Nmr Structural Analysis Of Apo Chicken Liver Bile Acid
Binding Protein
pdb|2JN3|A Chain A, Nmr Structure Of Cl-Babp Complexed To Chenodeoxycholic
Acid
pdb|2K62|A Chain A, Nmr Solution Structure Of The Supramolecular Adduct
Between A Liver Cytosolic Bile Acid Binding Protein And
A Bile Acid-Based Gd(Iii)-Chelate
Length = 125
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 7 KVGASVSPVLELEK--DDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSVITID 64
K+ + P++E+++ DD + + S + + F +G+E D T DG+K+K +
Sbjct: 29 KMARDIKPIVEIQQKGDD---FVVTSKTPRQTVTNSFTLGKEADITTMDGKKLKCTV--- 82
Query: 65 GDTMTHIQKGDKETKIIRVFSDDEVKMTLTVDDI 98
H+ G TK + + EVK V+ I
Sbjct: 83 -----HLANGKLVTKSEKFSHEQEVKGNEMVETI 111
>pdb|1Q98|A Chain A, Structure Of A Thiol Peroxidase From Haemophilus
Influenzae Rd
pdb|1Q98|B Chain B, Structure Of A Thiol Peroxidase From Haemophilus
Influenzae Rd
Length = 165
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 32 STFKNHAIKFKIGEEFDEETPDGRKVKSVITID 64
STF+NHA+ ++G + G ++VI +D
Sbjct: 105 STFRNHALHSQLGVDIQTGPLAGLTSRAVIVLD 137
>pdb|1I2D|A Chain A, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|B Chain B, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|C Chain C, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
Length = 573
Score = 25.4 bits (54), Expect = 9.2, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 13/77 (16%)
Query: 34 FKNHAIKFKIGEEFDEETPDGRKVKSVITIDGDTMT----HIQKGDKETKIIRVFSDDEV 89
F N A ++ E D DG IT+D +Q G + T +R F DD
Sbjct: 58 FMNQADYDRVCE--DNRLADGNVFSMPITLDASQEVIDEKKLQAGSRIT--LRDFRDDRN 113
Query: 90 KMTLTVDDIVCTRIYKP 106
LT+DD IY+P
Sbjct: 114 LAILTIDD-----IYRP 125
>pdb|1EIO|A Chain A, Ileal Lipid Binding Protein In Complex With Glycocholate
Length = 127
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 20 KDDSGTYTLHSNSTFKNHAIK--FKIGEEFDEETPDGRKVKSVITIDG 65
K D +T S H+I F IG+E D ET G+K K+ + ++G
Sbjct: 41 KQDGQNFTW-SQQYPGGHSITNTFTIGKECDIETIGGKKFKATVQMEG 87
>pdb|1EAL|A Chain A, Nmr Study Of Ileal Lipid Binding Protein
Length = 127
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 20 KDDSGTYTLHSNSTFKNHAIK--FKIGEEFDEETPDGRKVKSVITIDG 65
K D +T S H+I F IG+E D ET G+K K+ + ++G
Sbjct: 41 KQDGQNFTW-SQQYPGGHSITNTFTIGKECDIETIGGKKFKATVQMEG 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,326,979
Number of Sequences: 62578
Number of extensions: 133264
Number of successful extensions: 378
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 96
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)