Query psy15136
Match_columns 107
No_of_seqs 102 out of 678
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 21:31:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4015|consensus 100.0 4.1E-39 9E-44 215.3 16.0 106 1-107 26-132 (133)
2 PF14651 Lipocalin_7: Lipocali 100.0 5.5E-31 1.2E-35 176.1 16.2 103 1-107 24-127 (128)
3 PF00061 Lipocalin: Lipocalin 93.8 0.12 2.5E-06 33.5 4.0 90 13-106 38-143 (144)
4 TIGR03066 Gem_osc_para_1 Gemma 87.2 6.4 0.00014 25.8 10.4 78 24-103 25-110 (111)
5 TIGR03067 Planc_TIGR03067 Plan 85.4 4 8.7E-05 26.2 5.6 54 17-72 32-94 (107)
6 PF13648 Lipocalin_4: Lipocali 82.4 8 0.00017 22.8 10.4 35 56-90 68-103 (104)
7 TIGR03067 Planc_TIGR03067 Plan 79.7 11 0.00024 24.2 6.0 54 44-97 37-98 (107)
8 PF11012 DUF2850: Protein of u 75.2 16 0.00036 22.4 6.5 43 40-87 18-60 (79)
9 PF05417 Peptidase_C41: Hepati 72.6 19 0.00042 24.5 5.8 51 2-53 107-157 (161)
10 TIGR03066 Gem_osc_para_1 Gemma 67.8 21 0.00047 23.3 5.1 42 60-101 37-82 (111)
11 PF09939 DUF2171: Uncharacteri 65.0 14 0.00031 22.0 3.6 51 47-97 6-64 (67)
12 KOG4015|consensus 58.4 54 0.0012 22.1 7.7 62 20-84 66-129 (133)
13 PRK12426 elongation factor P; 50.6 67 0.0015 22.8 5.6 42 27-69 40-81 (185)
14 TIGR00037 eIF_5A translation i 50.5 65 0.0014 21.4 5.3 44 26-70 45-88 (130)
15 PF07076 DUF1344: Protein of u 49.3 46 0.001 19.5 3.9 43 21-69 13-56 (61)
16 PF06622 SepQ: SepQ protein; 47.2 69 0.0015 24.1 5.4 39 66-104 26-64 (305)
17 COG4506 Uncharacterized protei 45.0 67 0.0014 21.9 4.6 27 47-74 45-71 (143)
18 COG4722 Phage-related protein 42.9 80 0.0017 23.4 5.2 43 11-56 149-191 (239)
19 PF03442 CBM_X2: Carbohydrate 39.3 8.5 0.00018 23.7 -0.3 37 55-91 17-55 (84)
20 PF13924 Lipocalin_5: Lipocali 33.0 1.5E+02 0.0032 19.6 8.0 51 57-107 74-140 (140)
21 PF12992 DUF3876: Domain of un 31.9 1.4E+02 0.0029 18.9 7.7 20 11-31 23-42 (95)
22 COG1974 LexA SOS-response tran 30.8 71 0.0015 22.9 3.3 43 64-106 118-164 (201)
23 PF14729 DUF4467: Domain of un 29.0 1.2E+02 0.0025 19.3 3.6 32 59-90 36-72 (94)
24 PF07367 FB_lectin: Fungal fru 28.0 1.8E+02 0.0039 19.8 4.6 24 46-69 112-136 (140)
25 PF09642 YonK: YonK protein; 26.8 48 0.001 19.2 1.5 30 34-65 25-54 (62)
26 TIGR00498 lexA SOS regulatory 25.8 69 0.0015 22.1 2.5 24 83-106 139-162 (199)
27 PRK04542 elongation factor P; 25.1 1.7E+02 0.0036 20.9 4.3 40 28-69 43-83 (189)
28 PF06995 Phage_P2_GpU: Phage P 25.0 1.9E+02 0.0042 18.4 6.3 48 4-63 64-113 (121)
29 PTZ00037 DnaJ_C chaperone prot 24.0 1.6E+02 0.0036 23.4 4.5 50 18-72 269-323 (421)
30 PF05100 Phage_tail_L: Phage m 23.3 96 0.0021 22.5 2.8 49 12-64 97-148 (206)
31 COG1791 Uncharacterized conser 22.9 2.9E+02 0.0062 19.7 7.2 46 60-105 99-153 (181)
32 TIGR02178 yeiP elongation fact 22.6 1.9E+02 0.0041 20.5 4.1 38 30-69 43-81 (186)
33 PRK14887 KEOPS complex Pcc1-li 22.6 1.8E+02 0.004 17.7 3.7 17 55-71 35-51 (84)
34 PF11810 DUF3332: Domain of un 22.3 2.9E+02 0.0062 19.4 5.3 52 13-66 88-139 (176)
35 PF06905 FAIM1: Fas apoptotic 22.0 2.9E+02 0.0064 19.4 11.4 28 75-102 124-152 (177)
36 PF09116 gp45-slide_C: gp45 sl 21.1 1.7E+02 0.0036 19.1 3.4 38 6-44 16-57 (112)
37 cd05860 Ig4_SCFR Fourth immuno 20.9 1.4E+02 0.0031 19.0 3.0 20 24-43 78-97 (101)
38 PRK12423 LexA repressor; Provi 20.9 96 0.0021 21.8 2.4 46 60-106 116-165 (202)
39 PF14250 AbrB-like: AbrB-like 20.8 63 0.0014 19.5 1.2 36 13-51 28-63 (71)
40 PF02941 FeThRed_A: Ferredoxin 20.6 43 0.00094 19.9 0.5 25 44-68 21-45 (67)
41 PF14061 Mtf2_C: Polycomb-like 20.6 1.8E+02 0.0038 16.3 3.2 24 42-66 21-48 (50)
42 PRK14578 elongation factor P; 20.5 2.3E+02 0.005 20.1 4.2 41 27-69 42-83 (187)
43 PRK10276 DNA polymerase V subu 20.4 85 0.0018 20.6 2.0 23 84-106 80-102 (139)
44 TIGR00038 efp translation elon 20.0 3.2E+02 0.0069 19.1 5.7 43 26-69 38-80 (184)
No 1
>KOG4015|consensus
Probab=100.00 E-value=4.1e-39 Score=215.32 Aligned_cols=106 Identities=49% Similarity=0.837 Sum_probs=104.3
Q ss_pred CChhhhhhhhcCCCeEEEEEcCCccEEEEEeecCceeEEEEEcCceEEEeCCCCceEEEEEEEeCCEEEEEEeCCcc-eE
Q psy15136 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSVITIDGDTMTHIQKGDKE-TK 79 (107)
Q Consensus 1 v~~~~Rk~~~~~~p~~~I~~~Gd~~~~i~~~t~~kt~~~~F~lGeefe~~~~dG~~~k~t~t~eg~kLv~~~~~~~~-~~ 79 (107)
|||+.||+|+.++|+++|+|+|| +|+|++.|.+|+.+++|+||+|||+.++|||++|++++|||++|+++|+++++ .+
T Consensus 26 V~~~~Rk~a~~~kp~~~i~~~G~-~~~~~t~Stfknt~~~f~lGeeFee~t~Dgrk~kstvt~e~~~lv~~qk~~gke~~ 104 (133)
T KOG4015|consen 26 VGWATRKIAKLAKPVLEITQDGD-KFTIKTLSTFKNTEISFKLGEEFEEETADGRKVKSTVTLEGGLLVHHQKGDGKETT 104 (133)
T ss_pred CcHhHHHHHhhcCCeEEEEEcCC-EEEEEEeecccceEEEEEEeeeeccccCCCCEEEEEEEEeCCeEEEEEcCCCCceE
Confidence 78999999999999999999999 99999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEEEECCEEEEEEEECCEEEEEEEEeC
Q psy15136 80 IIRVFSDDEVKMTLTVDDIVCTRIYKPL 107 (107)
Q Consensus 80 ~~rev~g~~l~~t~~~~~v~~kR~ykr~ 107 (107)
++|+++||+|+++|++|||+|+|+|+|+
T Consensus 105 ~tr~l~~dkLv~~~~~~~Vvc~R~ykr~ 132 (133)
T KOG4015|consen 105 ITRKLEGDKLVVTMTMNGVVCTRVYKRV 132 (133)
T ss_pred EEEEEeCCEEEEEEEECCEEEEEEEEEc
Confidence 9999999999999999999999999995
No 2
>PF14651 Lipocalin_7: Lipocalin / cytosolic fatty-acid binding protein family; PDB: 2F73_A 3B2L_A 3B2J_A 3STN_A 3STK_A 3STM_X 3VG6_A 3VG4_A 3VG5_A 3B2K_A ....
Probab=99.98 E-value=5.5e-31 Score=176.06 Aligned_cols=103 Identities=25% Similarity=0.383 Sum_probs=94.0
Q ss_pred CChhhhhhhhcCCCeEEEEEcCCccEEEEEeec-CceeEEEEEcCceEEEeCCCCceEEEEEEEeCCEEEEEEeCCcceE
Q psy15136 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNST-FKNHAIKFKIGEEFDEETPDGRKVKSVITIDGDTMTHIQKGDKETK 79 (107)
Q Consensus 1 v~~~~Rk~~~~~~p~~~I~~~Gd~~~~i~~~t~-~kt~~~~F~lGeefe~~~~dG~~~k~t~t~eg~kLv~~~~~~~~~~ 79 (107)
||.++++.+++++|++||+|+|| +|+|+..++ .++..++|+||+|+|+++++|+++|++++||||+|+..... ..
T Consensus 24 vp~d~i~k~k~~k~v~Ei~q~Gd-~ft~t~~~~ggk~~tNtFtiG~E~e~~~~~G~k~K~tvt~EG~KLv~~~~~---~~ 99 (128)
T PF14651_consen 24 VPEDKIQKGKDAKPVTEISQNGD-DFTWTTTTPGGKTVTNTFTIGKECEEETMGGKKFKATVTMEGGKLVVTYPN---YD 99 (128)
T ss_dssp --HHHHHHHTTS-EEEEEEEETT-EEEEEEEETTTEEEEEEEETTCEEEEEETTSCEEEEEEEEETTEEEEEETT---EE
T ss_pred CCHHHHHhhhCCCceEEEEEeCC-eEEEEEEecCCCEEEEEEEcCcceEEEcCCCcEEEEEEEEECCEEEEEcCC---cc
Confidence 57889999999999999999999 999998665 68999999999999999999999999999999999987654 78
Q ss_pred EEEEEECCEEEEEEEECCEEEEEEEEeC
Q psy15136 80 IIRVFSDDEVKMTLTVDDIVCTRIYKPL 107 (107)
Q Consensus 80 ~~rev~g~~l~~t~~~~~v~~kR~ykr~ 107 (107)
.+||+.||+|+.+++++|++|+|+|||+
T Consensus 100 ~~~Ei~gd~lv~t~T~g~vt~kR~skr~ 127 (128)
T PF14651_consen 100 STREIVGDELVETMTLGGVTFKRVSKRI 127 (128)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEECCEEEEEEEeCCEEEEEEEeec
Confidence 8999999999999999999999999994
No 3
>PF00061 Lipocalin: Lipocalin / cytosolic fatty-acid binding protein family fatty acid-binding protein signature lipocalin signature; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 1I05_A 1MUP_A 2LB6_A 1I04_A 1I06_A 1DC9_A 1URE_A 1AEL_A 1T8V_A 1ICM_A ....
Probab=93.79 E-value=0.12 Score=33.52 Aligned_cols=90 Identities=21% Similarity=0.227 Sum_probs=59.7
Q ss_pred CCeEEEEEcCCccEEEEEeecCceeEEEEEcCceEEEeCCCCceEEEEEEEeC-CEEEEEE--eCCcceEEEEEE-ECC-
Q psy15136 13 SPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSVITIDG-DTMTHIQ--KGDKETKIIRVF-SDD- 87 (107)
Q Consensus 13 ~p~~~I~~~Gd~~~~i~~~t~~kt~~~~F~lGeefe~~~~dG~~~k~t~t~eg-~kLv~~~--~~~~~~~~~rev-~g~- 87 (107)
-+...+.++|+ . -.......+..+..|+++.+|.+ .+++..+.+. ..+. +.++... ..+|+....+++ ..+
T Consensus 38 ~~~~~~~~~~~-~-c~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~v~-~tdy~~yai~~~~~~~~g~~~~~~~l~~R~~ 113 (144)
T PF00061_consen 38 LPVTFTSKRGG-Q-CVTITVTFKKTEEPGKFTVEFSE-YPGGNDFWVL-DTDYDNYAIVYSCKKDNGKHTIVAWLLSRTP 113 (144)
T ss_dssp EEEEEEEEETT-E-EEEEEEEEEEEEETTEEEEEEEE-STTEEEEEEE-EEESSTEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred eEEEEEEecCC-E-EEEEEEeEEecccCCccceeeec-cccccceeee-ccCCCCEEEEEEEccCCCceEEEEEEEcCCC
Confidence 34444455666 5 33333356667777999999998 7778888887 6666 7766433 223446677777 666
Q ss_pred EEEEEE-----------EECCEEEEEEEEe
Q psy15136 88 EVKMTL-----------TVDDIVCTRIYKP 106 (107)
Q Consensus 88 ~l~~t~-----------~~~~v~~kR~ykr 106 (107)
+|..++ .+....+.+.++|
T Consensus 114 ~l~~~~~~~f~~~~~~~gi~~~~i~~~~~~ 143 (144)
T PF00061_consen 114 ELSPEALEKFKKFAKSLGIDEENIVRTFQR 143 (144)
T ss_dssp EEEHHHHHHHHHHHHHTTETGGCEEEEEEE
T ss_pred cCCHHHHHHHHHHHHhCCCCHHeEEECCCC
Confidence 777776 6677777777765
No 4
>TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066. This model represents an uncharacterized paralogous family in Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. This family shows sequence similarity to TIGR03067, which is also found in Gemmata obscuriglobus as well as in a few other species.
Probab=87.23 E-value=6.4 Score=25.79 Aligned_cols=78 Identities=18% Similarity=0.279 Sum_probs=46.0
Q ss_pred ccEEEEEeecCceeEEEEEcCceEEEe-CCCCc--eEEEEEEEeCCEEEEEEeCCcc----eEEEEEEECCEEEEEEEEC
Q psy15136 24 GTYTLHSNSTFKNHAIKFKIGEEFDEE-TPDGR--KVKSVITIDGDTMTHIQKGDKE----TKIIRVFSDDEVKMTLTVD 96 (107)
Q Consensus 24 ~~~~i~~~t~~kt~~~~F~lGeefe~~-~~dG~--~~k~t~t~eg~kLv~~~~~~~~----~~~~rev~g~~l~~t~~~~ 96 (107)
|+|++.-.. ......|.-+-.+-.. +-+|. ....+|+++|++|...-.+++. ....-++.+++|+....-+
T Consensus 25 GkW~~~~~~--~~~~leF~~dGKL~v~~gnng~~~~~~Gty~L~G~kLtL~~~p~g~t~k~~Vtv~~l~~~~Lvl~d~dg 102 (111)
T TIGR03066 25 GKWETSKTK--DDVVIEFAKDGKLVVTIGEKGKEVKADGTYKLDGNKLTLTLKAGGKEKKETLTVKKLTDDELVGKDPDG 102 (111)
T ss_pred EEEEEeeeC--CceEEEEcCCCeEEEecCCCCcEeccCceEEEECCEEEEEEcCCCccccceEEEEEecCCeEEEEcCCC
Confidence 588883222 3345566644444311 22332 4557899999999975322222 3456688999999876665
Q ss_pred C-EEEEEE
Q psy15136 97 D-IVCTRI 103 (107)
Q Consensus 97 ~-v~~kR~ 103 (107)
. ++.+|+
T Consensus 103 ~~~~~~rv 110 (111)
T TIGR03066 103 KKDTLKRV 110 (111)
T ss_pred CEeEEEEc
Confidence 4 455553
No 5
>TIGR03067 Planc_TIGR03067 Planctomycetes uncharacterized domain TIGR03067. This domain occurs in several species, mostly from the Planctomycetes division of the bacteria. It is expanded into a paralogous family of at least twenty-five members in Gemmata obscuriglobus UQM 2246. This family appears related to TIGR03066, which also is expanded into a large paralogous family in Gemmata obscuriglobus.
Probab=85.36 E-value=4 Score=26.22 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=26.7
Q ss_pred EEEEcCCccEEEEEeecCceeEEEEEcCceE-----EEe----CCCCceEEEEEEEeCCEEEEEE
Q psy15136 17 ELEKDDSGTYTLHSNSTFKNHAIKFKIGEEF-----DEE----TPDGRKVKSVITIDGDTMTHIQ 72 (107)
Q Consensus 17 ~I~~~Gd~~~~i~~~t~~kt~~~~F~lGeef-----e~~----~~dG~~~k~t~t~eg~kLv~~~ 72 (107)
.+...|| +|++..... ....-+|.|..+- +.. ...|+....+|.++||.|+...
T Consensus 32 ~~~~~g~-~~~~~~~~~-~~~~~~~~Ld~~~~Pk~id~~~~~g~~~g~~~~gIY~l~gd~L~vC~ 94 (107)
T TIGR03067 32 VWTFKGD-KLTVKDGEG-DQGKGTFKLDPAANPKTIDLTSPDGPDKGKTIKGIYKLDGDTLTVCF 94 (107)
T ss_pred EEEEeCC-EEEEEcCCC-cceeEEEEECCCCCccEEEEEccCCCCCCCEEEEEEEEcCCEEEEEE
Confidence 4556777 777654322 1114556665432 221 1124556666666666665444
No 6
>PF13648 Lipocalin_4: Lipocalin-like domain
Probab=82.37 E-value=8 Score=22.82 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=19.7
Q ss_pred eEEEEEEEeCCEEEEEEeCCcc-eEEEEEEECCEEE
Q psy15136 56 KVKSVITIDGDTMTHIQKGDKE-TKIIRVFSDDEVK 90 (107)
Q Consensus 56 ~~k~t~t~eg~kLv~~~~~~~~-~~~~rev~g~~l~ 90 (107)
....++++++++|......+.. .....++.+++|+
T Consensus 68 ~~~gty~i~~~~i~~~~~~~~~~~~~i~~lt~~~l~ 103 (104)
T PF13648_consen 68 SDSGTYTIEGDKITITFDDGTYKDYYIISLTDNTLV 103 (104)
T ss_pred ceEEEEEEECCEEEEEECCCCEEEEEEEEEECCEEE
Confidence 4556666677766655432222 4445556676665
No 7
>TIGR03067 Planc_TIGR03067 Planctomycetes uncharacterized domain TIGR03067. This domain occurs in several species, mostly from the Planctomycetes division of the bacteria. It is expanded into a paralogous family of at least twenty-five members in Gemmata obscuriglobus UQM 2246. This family appears related to TIGR03066, which also is expanded into a large paralogous family in Gemmata obscuriglobus.
Probab=79.72 E-value=11 Score=24.18 Aligned_cols=54 Identities=15% Similarity=0.275 Sum_probs=35.6
Q ss_pred CceEEEeCCCCceEEEEEEEeCCE----EEEEEe-C--Ccc-eEEEEEEECCEEEEEEEECC
Q psy15136 44 GEEFDEETPDGRKVKSVITIDGDT----MTHIQK-G--DKE-TKIIRVFSDDEVKMTLTVDD 97 (107)
Q Consensus 44 Geefe~~~~dG~~~k~t~t~eg~k----Lv~~~~-~--~~~-~~~~rev~g~~l~~t~~~~~ 97 (107)
|.++.....++...+.++.++-.+ |-.+.. + .|+ ..-.|+++||+|++-+..++
T Consensus 37 g~~~~~~~~~~~~~~~~~~Ld~~~~Pk~id~~~~~g~~~g~~~~gIY~l~gd~L~vC~~~~g 98 (107)
T TIGR03067 37 GDKLTVKDGEGDQGKGTFKLDPAANPKTIDLTSPDGPDKGKTIKGIYKLDGDTLTVCFSGGG 98 (107)
T ss_pred CCEEEEEcCCCcceeEEEEECCCCCccEEEEEccCCCCCCCEEEEEEEEcCCEEEEEECCCC
Confidence 444555566676668999997532 333321 2 345 89999999999998765543
No 8
>PF11012 DUF2850: Protein of unknown function (DUF2850); InterPro: IPR021271 This family of proteins with unknown function appear to be restricted to Vibrionaceae.
Probab=75.19 E-value=16 Score=22.40 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=31.2
Q ss_pred EEEcCceEEEeCCCCceEEEEEEEeCCEEEEEEeCCcceEEEEEEECC
Q psy15136 40 KFKIGEEFDEETPDGRKVKSVITIDGDTMTHIQKGDKETKIIRVFSDD 87 (107)
Q Consensus 40 ~F~lGeefe~~~~dG~~~k~t~t~eg~kLv~~~~~~~~~~~~rev~g~ 87 (107)
.|+|++.= ...+|+.+-+.+.|+|+.|.-.--. ....+.+.+.
T Consensus 18 ~~~l~~~G--V~~ngrlV~T~F~fDG~~l~~~~G~---~~~~y~~~~~ 60 (79)
T PF11012_consen 18 EFTLNESG--VFRNGRLVATSFEFDGKTLEYRTGS---GTYRYQISGE 60 (79)
T ss_pred EEEECCCc--EEECCCEEeeEEEECCCEEEEEECC---eEEEEEEcCC
Confidence 46666554 5578999999999999999754422 5667777666
No 9
>PF05417 Peptidase_C41: Hepatitis E cysteine protease; InterPro: IPR008748 This entry represents the cysteine proteinase of hepatitis E virus, which is a papain-like protease that cleaves the viral polyprotein encoded by ORF1 of the hepatitis E virus (Porcine hemagglutinating encephalomyelitis virus) [, , ].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=72.60 E-value=19 Score=24.50 Aligned_cols=51 Identities=14% Similarity=0.201 Sum_probs=39.2
Q ss_pred ChhhhhhhhcCCCeEEEEEcCCccEEEEEeecCceeEEEEEcCceEEEeCCC
Q psy15136 2 GLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPD 53 (107)
Q Consensus 2 ~~~~Rk~~~~~~p~~~I~~~Gd~~~~i~~~t~~kt~~~~F~lGeefe~~~~d 53 (107)
|.++-..|.....+++++...+ .+.-++.-+-|+....|.=|--.|..+|.
T Consensus 107 p~dl~ARA~RLtATVev~~~~g-rl~CrT~lGNktF~T~f~DGa~LE~nGPE 157 (161)
T PF05417_consen 107 PSDLAARASRLTATVEVSDTDG-RLTCRTTLGNKTFRTVFTDGAQLEANGPE 157 (161)
T ss_pred CHHHHHHhhcceEEEEEecCCC-eEEEEEeecCceEEEEEecccEEEcCCch
Confidence 4444455666677888866554 99999999999999999999888866654
No 10
>TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066. This model represents an uncharacterized paralogous family in Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. This family shows sequence similarity to TIGR03067, which is also found in Gemmata obscuriglobus as well as in a few other species.
Probab=67.80 E-value=21 Score=23.31 Aligned_cols=42 Identities=10% Similarity=0.078 Sum_probs=28.5
Q ss_pred EEEE-eCCEEEEEEeCCcc---eEEEEEEECCEEEEEEEECCEEEE
Q psy15136 60 VITI-DGDTMTHIQKGDKE---TKIIRVFSDDEVKMTLTVDDIVCT 101 (107)
Q Consensus 60 t~t~-eg~kLv~~~~~~~~---~~~~rev~g~~l~~t~~~~~v~~k 101 (107)
.+.+ ++++|+.....++. ..-+|.++|++|.+++..+|-+.+
T Consensus 37 ~leF~~dGKL~v~~gnng~~~~~~Gty~L~G~kLtL~~~p~g~t~k 82 (111)
T TIGR03066 37 VIEFAKDGKLVVTIGEKGKEVKADGTYKLDGNKLTLTLKAGGKEKK 82 (111)
T ss_pred EEEEcCCCeEEEecCCCCcEeccCceEEEECCEEEEEEcCCCcccc
Confidence 3444 57899866533444 677889999999988777655443
No 11
>PF09939 DUF2171: Uncharacterized protein conserved in bacteria (DUF2171); InterPro: IPR018684 This family of various hypothetical prokaryotic proteins has no known function.
Probab=64.96 E-value=14 Score=22.00 Aligned_cols=51 Identities=24% Similarity=0.410 Sum_probs=38.2
Q ss_pred EEEeCCCCceEEEEEEEeCCEEEEEEeC---Ccc-----eEEEEEEECCEEEEEEEECC
Q psy15136 47 FDEETPDGRKVKSVITIDGDTMTHIQKG---DKE-----TKIIRVFSDDEVKMTLTVDD 97 (107)
Q Consensus 47 fe~~~~dG~~~k~t~t~eg~kLv~~~~~---~~~-----~~~~rev~g~~l~~t~~~~~ 97 (107)
.+....||..+=++=-+||+.+-.+... ++. ..++.+++++...+..+.+.
T Consensus 6 meVi~sdG~~vGtVDhveGd~IKLtk~d~~~~g~HH~IPls~V~~Vd~~~V~L~~~~~~ 64 (67)
T PF09939_consen 6 MEVIGSDGVHVGTVDHVEGDRIKLTKDDSGHDGQHHYIPLSWVDSVDDDKVHLSKTADE 64 (67)
T ss_pred CEEEeCCCCEEEEEeeEeCCEEEEeccCCCCCCcceEEehhHheeEcCCEEEEcCCHHH
Confidence 3457789999988889999887765533 444 47889999999888776543
No 12
>KOG4015|consensus
Probab=58.43 E-value=54 Score=22.10 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=37.7
Q ss_pred EcCCccEEEEEeecCceeEEEEEc--CceEEEeCCCCceEEEEEEEeCCEEEEEEeCCcceEEEEEE
Q psy15136 20 KDDSGTYTLHSNSTFKNHAIKFKI--GEEFDEETPDGRKVKSVITIDGDTMTHIQKGDKETKIIRVF 84 (107)
Q Consensus 20 ~~Gd~~~~i~~~t~~kt~~~~F~l--Geefe~~~~dG~~~k~t~t~eg~kLv~~~~~~~~~~~~rev 84 (107)
+-|. .|.-.+.. .+.....|++ |...-....||.....+..++|++|+.....++ .+-+|.+
T Consensus 66 ~lGe-eFee~t~D-grk~kstvt~e~~~lv~~qk~~gke~~~tr~l~~dkLv~~~~~~~-Vvc~R~y 129 (133)
T KOG4015|consen 66 KLGE-EFEEETAD-GRKVKSTVTLEGGLLVHHQKGDGKETTITRKLEGDKLVVTMTMNG-VVCTRVY 129 (133)
T ss_pred EEee-eeccccCC-CCEEEEEEEEeCCeEEEEEcCCCCceEEEEEEeCCEEEEEEEECC-EEEEEEE
Confidence 3455 55555533 3444444444 422224567888999999999999998765444 5555544
No 13
>PRK12426 elongation factor P; Provisional
Probab=50.61 E-value=67 Score=22.79 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=30.0
Q ss_pred EEEEeecCceeEEEEEcCceEEEeCCCCceEEEEEEEeCCEEE
Q psy15136 27 TLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSVITIDGDTMT 69 (107)
Q Consensus 27 ~i~~~t~~kt~~~~F~lGeefe~~~~dG~~~k~t~t~eg~kLv 69 (107)
.++.....+..+.+|+-|+.+|...++-+.++-.+. ||+.++
T Consensus 40 klknl~tG~~~e~tf~s~ek~e~a~ve~~~~qylY~-dg~~~~ 81 (185)
T PRK12426 40 SLQAADSDVVVERNFKAGQEVKEAQFEPRNLEYLYL-EGDEYL 81 (185)
T ss_pred EEEEcCCCCeEEEEECCCCeEEEeEEEeeEeEEEEE-CCCeEE
Confidence 355556678889999999999988887655544443 556665
No 14
>TIGR00037 eIF_5A translation initiation factor eIF-5A. Observed in eukaryotes and archaea.
Probab=50.49 E-value=65 Score=21.37 Aligned_cols=44 Identities=11% Similarity=-0.040 Sum_probs=33.7
Q ss_pred EEEEEeecCceeEEEEEcCceEEEeCCCCceEEEEEEEeCCEEEE
Q psy15136 26 YTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSVITIDGDTMTH 70 (107)
Q Consensus 26 ~~i~~~t~~kt~~~~F~lGeefe~~~~dG~~~k~t~t~eg~kLv~ 70 (107)
+.++..-+.+..+.+|..++.+|...++-+..+-.+. +|+.++.
T Consensus 45 ~k~knl~tG~~~e~~f~s~~~ve~~~ve~~~~qylY~-dg~~~~f 88 (130)
T TIGR00037 45 VVAIGIFTGKKLEFVSPSTSKVEVPIVDRREYQVLAI-MGGMVQL 88 (130)
T ss_pred EEEEECCCCCEEEEEECCCCEEEEeEEEEEEEEEEEe-cCCEEEE
Confidence 4445556677888999999999988888777777777 7777764
No 15
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=49.34 E-value=46 Score=19.46 Aligned_cols=43 Identities=26% Similarity=0.269 Sum_probs=29.0
Q ss_pred cCCccEEEEEeecCceeEEEEEcCceEEEeCCC-CceEEEEEEEeCCEEE
Q psy15136 21 DDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPD-GRKVKSVITIDGDTMT 69 (107)
Q Consensus 21 ~Gd~~~~i~~~t~~kt~~~~F~lGeefe~~~~d-G~~~k~t~t~eg~kLv 69 (107)
|-+ ..+|+...+ .+|+|-++|+...+. |.++.+.+...+++.+
T Consensus 13 d~~-~~titLdDG-----ksy~lp~ef~~~~L~~G~kV~V~yd~~~gk~v 56 (61)
T PF07076_consen 13 DPE-TMTITLDDG-----KSYKLPEEFDFDGLKPGMKVVVFYDEVDGKRV 56 (61)
T ss_pred cCC-ceEEEecCC-----CEEECCCcccccccCCCCEEEEEEEccCCcEE
Confidence 444 555554443 258888888877655 8888888888776544
No 16
>PF06622 SepQ: SepQ protein; InterPro: IPR009532 This family consists of several enterobacterial SepQ proteins from Escherichia coli and Citrobacter rodentium. The function of this family is unclear.
Probab=47.20 E-value=69 Score=24.08 Aligned_cols=39 Identities=10% Similarity=0.190 Sum_probs=30.2
Q ss_pred CEEEEEEeCCcceEEEEEEECCEEEEEEEECCEEEEEEE
Q psy15136 66 DTMTHIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTRIY 104 (107)
Q Consensus 66 ~kLv~~~~~~~~~~~~rev~g~~l~~t~~~~~v~~kR~y 104 (107)
+.|..+.++.+-..+.|+++|+.+..++++.|..|.-+-
T Consensus 26 grlyit~egha~~Atfre~eG~Gi~lpL~y~G~~cgfWl 64 (305)
T PF06622_consen 26 GRLYITSEGHACHATFREVEGNGIRLPLHYSGYECGFWL 64 (305)
T ss_pred ceEEEecCCceEEEEeeeccCceEEEEEEEccEeeeEEE
Confidence 566655544322788899999999999999999997653
No 17
>COG4506 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.96 E-value=67 Score=21.94 Aligned_cols=27 Identities=33% Similarity=0.608 Sum_probs=19.8
Q ss_pred EEEeCCCCceEEEEEEEeCCEEEEEEeC
Q psy15136 47 FDEETPDGRKVKSVITIDGDTMTHIQKG 74 (107)
Q Consensus 47 fe~~~~dG~~~k~t~t~eg~kLv~~~~~ 74 (107)
+.|...+|... +++.|++|.|.....|
T Consensus 45 Y~E~~~~g~v~-TtlKi~d~e~~liR~G 71 (143)
T COG4506 45 YQEVLSDGTVV-TTLKIDDDELLLIRSG 71 (143)
T ss_pred EEEEeeCceeE-EEEEEcCCEEEEEEcc
Confidence 56677777544 9999999998765544
No 18
>COG4722 Phage-related protein [Function unknown]
Probab=42.88 E-value=80 Score=23.41 Aligned_cols=43 Identities=26% Similarity=0.460 Sum_probs=28.1
Q ss_pred cCCCeEEEEEcCCccEEEEEeecCceeEEEEEcCceEEEeCCCCce
Q psy15136 11 SVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRK 56 (107)
Q Consensus 11 ~~~p~~~I~~~Gd~~~~i~~~t~~kt~~~~F~lGeefe~~~~dG~~ 56 (107)
.+.|.++|.-.|.|+++|.+...-.+....+.+| ++.++|-.+
T Consensus 149 es~P~Iei~gs~~G~iTi~~~~~~~~~~~~~~~~---d~i~IDs~~ 191 (239)
T COG4722 149 ESPPLIEIKGSGKGDITIETNDLYITFTGLLNVG---DEITIDSEK 191 (239)
T ss_pred ccccEEEEEeccCceEEEEeccceeEEEEEeecc---cEEEEeeee
Confidence 4589999998888788888766334444456666 344555444
No 19
>PF03442 CBM_X2: Carbohydrate binding domain X2; InterPro: IPR005102 The structure of this module is known [] and consists of an Ig-like fold. The function of this domain is unknown, but might be involved in mediating interaction with carbohydrates.; PDB: 1EHX_A.
Probab=39.31 E-value=8.5 Score=23.66 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=14.6
Q ss_pred ceEEEEEEEeCCEEEEEEeCCcc--eEEEEEEECCEEEE
Q psy15136 55 RKVKSVITIDGDTMTHIQKGDKE--TKIIRVFSDDEVKM 91 (107)
Q Consensus 55 ~~~k~t~t~eg~kLv~~~~~~~~--~~~~rev~g~~l~~ 91 (107)
..+.++++|.|+.|..+..++.. .-.-|.+.|++|++
T Consensus 17 ~D~~vtl~~ngntl~~I~~g~~~L~~g~DYtvsg~~vti 55 (84)
T PF03442_consen 17 ADVTVTLTLNGNTLTSIKNGGTTLVEGTDYTVSGNTVTI 55 (84)
T ss_dssp --EEEEEE-TT-----BGG-----G-GGGEEEETTEEEE
T ss_pred ccEEEEEEeCCcEEEEEEeeeecccCCCCEEEeCCEEEE
Confidence 45667777777777755543222 22345567776654
No 20
>PF13924 Lipocalin_5: Lipocalin-like domain
Probab=32.99 E-value=1.5e+02 Score=19.57 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=32.3
Q ss_pred EEEEEEEeCCEEEEEE------eCCcc-eEEEEEEECCEEEEE-------EEECC--EEEEEEEEeC
Q psy15136 57 VKSVITIDGDTMTHIQ------KGDKE-TKIIRVFSDDEVKMT-------LTVDD--IVCTRIYKPL 107 (107)
Q Consensus 57 ~k~t~t~eg~kLv~~~------~~~~~-~~~~rev~g~~l~~t-------~~~~~--v~~kR~ykr~ 107 (107)
.-..+.++++.++++- .+-|. -....+++||.|+++ +..++ ..+.-+++|+
T Consensus 74 Y~G~y~v~~~~v~h~v~~s~~P~wvG~~Q~R~~~~~~d~L~l~~~~~~~~~~~~g~~~~~~L~W~R~ 140 (140)
T PF13924_consen 74 YSGRYEVDEDTVTHHVEVSLFPNWVGTQQRRNYEFEGDTLVLTLPPRVPPLSIGGKSSRAVLVWRRA 140 (140)
T ss_pred EEEEEEEcCcEEEEEEeEeCCCCcCCCEEEEEEEEeCCEEEEEEecccCccccCCceeEEEEEEEEC
Confidence 4456778888766533 23444 677788899999985 23344 3466666664
No 21
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=31.86 E-value=1.4e+02 Score=18.87 Aligned_cols=20 Identities=10% Similarity=0.321 Sum_probs=16.6
Q ss_pred cCCCeEEEEEcCCccEEEEEe
Q psy15136 11 SVSPVLELEKDDSGTYTLHSN 31 (107)
Q Consensus 11 ~~~p~~~I~~~Gd~~~~i~~~ 31 (107)
..+|++.|.++|+ .|.+...
T Consensus 23 ~~~P~v~I~r~g~-~Y~vti~ 42 (95)
T PF12992_consen 23 NGKPDVTIYRNGG-SYKVTIT 42 (95)
T ss_pred CCCCCEEEEECCC-eEEEEEE
Confidence 3589999999999 9887754
No 22
>COG1974 LexA SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]
Probab=30.81 E-value=71 Score=22.89 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=26.1
Q ss_pred eCCEEEEEEeCCcc---eEEEEEEECCEEEEEEEECC-EEEEEEEEe
Q psy15136 64 DGDTMTHIQKGDKE---TKIIRVFSDDEVKMTLTVDD-IVCTRIYKP 106 (107)
Q Consensus 64 eg~kLv~~~~~~~~---~~~~rev~g~~l~~t~~~~~-v~~kR~ykr 106 (107)
.|+.|+.-.-.||- ..-..+..+|.+++-+.-|+ .|.||+|++
T Consensus 118 ~GdSM~~~gi~dGDlvvV~~~~~a~~GdiVvA~i~g~e~TvKrl~~~ 164 (201)
T COG1974 118 SGDSMIDAGILDGDLVVVDPTEDAENGDIVVALIDGEEATVKRLYRD 164 (201)
T ss_pred cCCccccCcCCCCCEEEEcCCCCCCCCCEEEEEcCCCcEEEEEEEEe
Confidence 46666633211333 23333556778887777766 899998875
No 23
>PF14729 DUF4467: Domain of unknown function with cystatin-like fold (DUF4467) ; PDB: 4EBG_A.
Probab=28.95 E-value=1.2e+02 Score=19.31 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=21.2
Q ss_pred EEEEEeCCEEEEEE----eCCcc-eEEEEEEECCEEE
Q psy15136 59 SVITIDGDTMTHIQ----KGDKE-TKIIRVFSDDEVK 90 (107)
Q Consensus 59 ~t~t~eg~kLv~~~----~~~~~-~~~~rev~g~~l~ 90 (107)
-+..+++|++++.. +.+.. ....+++.|+...
T Consensus 36 n~yVYedGK~Iii~y~~~k~~~~l~y~~Ye~~~~K~~ 72 (94)
T PF14729_consen 36 NIYVYEDGKYIIIAYKPFKDSDELHYYAYEKKGDKYE 72 (94)
T ss_dssp EEEEEGGGTEEEEEEE-BTT---EEEEEEEEETTEEE
T ss_pred cEEEecCCEEEEEEEEecCCCCEEEEEEEEecCCeEE
Confidence 46788999987543 23444 7888999998754
No 24
>PF07367 FB_lectin: Fungal fruit body lectin; InterPro: IPR009960 This family consists of several fungal fruit body lectin proteins. Fruit body lectins are thought to have insecticidal activity [] and may also function in capturing nematodes []. One member of this family, the lectin XCL from Xerocomus chrysenteron, induces drastic changes in the actin cytoskeleton after sugar binding at the cell surface and internalization, and has potent insecticidal activity. The fold of lectin xcl is not related to any of several lectin folds, but but shows significant structural similarity to cytolysins [].; PDB: 3QDX_A 3QDT_B 3QDW_A 3QDY_A 3QDU_A 3QDS_A 3QDV_B 1XI0_A 1X99_B 1Y2X_C ....
Probab=28.01 E-value=1.8e+02 Score=19.81 Aligned_cols=24 Identities=38% Similarity=0.738 Sum_probs=15.4
Q ss_pred eEEEeCCCCceEEEEEEE-eCCEEE
Q psy15136 46 EFDEETPDGRKVKSVITI-DGDTMT 69 (107)
Q Consensus 46 efe~~~~dG~~~k~t~t~-eg~kLv 69 (107)
+++.++.+|+.+++.++. |||.|.
T Consensus 112 ~~~~~~~~Gr~v~i~y~~~eGn~L~ 136 (140)
T PF07367_consen 112 EYEVKTSDGRNVKIKYTVAEGNNLE 136 (140)
T ss_dssp EEEEE-TTS-EEEEEEEE-SSSEEE
T ss_pred ceeeecCCCCEEEEEEEEcCCCeEE
Confidence 556667888888888766 466665
No 25
>PF09642 YonK: YonK protein; InterPro: IPR018600 YonK protein is expressed by the bacterial prophage SPbetaC []. It is a 63 residue protein that associates into a homo-octamer in the form of a beta-stranded barrel with four outer helical features at points of the compass. Its function is unknown. ; PDB: 2H4O_C.
Probab=26.82 E-value=48 Score=19.24 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=23.1
Q ss_pred CceeEEEEEcCceEEEeCCCCceEEEEEEEeC
Q psy15136 34 FKNHAIKFKIGEEFDEETPDGRKVKSVITIDG 65 (107)
Q Consensus 34 ~kt~~~~F~lGeefe~~~~dG~~~k~t~t~eg 65 (107)
.|+.++.|.|.+-| ..++|+.++.+++-++
T Consensus 25 ~K~~e~~Ydl~eil--~~F~gk~VsitIkEe~ 54 (62)
T PF09642_consen 25 TKEDEYTYDLNEIL--SEFNGKNVSITIKEEN 54 (62)
T ss_dssp -SS-EEEEEHHHHH--HTTTTSEEEEEEEEEE
T ss_pred hhhhhheecHHHHH--HHhCCceEEEEEeecc
Confidence 47778888888777 6799999999998764
No 26
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=25.81 E-value=69 Score=22.15 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=15.5
Q ss_pred EEECCEEEEEEEECCEEEEEEEEe
Q psy15136 83 VFSDDEVKMTLTVDDIVCTRIYKP 106 (107)
Q Consensus 83 ev~g~~l~~t~~~~~v~~kR~ykr 106 (107)
.+.+|.+++-..-+..++||++++
T Consensus 139 ~~~~G~ivvv~~~~~~~vKrl~~~ 162 (199)
T TIGR00498 139 DARNGEIVAAMIDGEVTVKRFYKD 162 (199)
T ss_pred CCCCCCEEEEEECCEEEEEEEEEE
Confidence 444566665555556788888764
No 27
>PRK04542 elongation factor P; Provisional
Probab=25.08 E-value=1.7e+02 Score=20.85 Aligned_cols=40 Identities=20% Similarity=0.132 Sum_probs=28.7
Q ss_pred EEEeecCceeEEEEEcCceEEEeCCCCceEEEEEEEe-CCEEE
Q psy15136 28 LHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSVITID-GDTMT 69 (107)
Q Consensus 28 i~~~t~~kt~~~~F~lGeefe~~~~dG~~~k~t~t~e-g~kLv 69 (107)
++.....+..+.+|+-|+.+|...++-+.+ .+.++ |+.++
T Consensus 43 lknl~tG~~~e~tfrs~ekve~a~~~~~~~--qylY~dg~~~~ 83 (189)
T PRK04542 43 FYDVRTGLKVEERFKGDDILDTVDLTRRPV--TFSYIDGDEYV 83 (189)
T ss_pred EEEcCCCCeEEEEECCCCeEEEEEEEEeEe--EEEEeCCCEEE
Confidence 445566788999999999999988875444 45454 45554
No 28
>PF06995 Phage_P2_GpU: Phage P2 GpU; InterPro: IPR009734 This family consists of several bacterial and phage proteins of around 130 residues in length which seem to be related to the bacteriophage P2 GpU protein (O64315 from SWISSPROT) which is thought to be involved in tail assembly [].
Probab=25.02 E-value=1.9e+02 Score=18.44 Aligned_cols=48 Identities=23% Similarity=0.220 Sum_probs=29.3
Q ss_pred hhhhhhhcCCCeEEEEEcCC--ccEEEEEeecCceeEEEEEcCceEEEeCCCCceEEEEEEE
Q psy15136 4 ITRKVGASVSPVLELEKDDS--GTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSVITI 63 (107)
Q Consensus 4 ~~Rk~~~~~~p~~~I~~~Gd--~~~~i~~~t~~kt~~~~F~lGeefe~~~~dG~~~k~t~t~ 63 (107)
.+|+++..-.|..=|.=+|. |.|.|+..+.. ......+|.-.+..+++
T Consensus 64 ~Lr~~~~~g~p~~Lv~G~G~~~G~~vI~si~e~------------~~~~~~~G~~~~~~~~l 113 (121)
T PF06995_consen 64 KLRAMAESGEPLPLVIGSGKVLGKWVITSISET------------QSYFDPDGNPRKIEFTL 113 (121)
T ss_pred HHHHHHHcCCceEEEECCCceeEEEEEEEEech------------heEecCCCCEEEEEEEE
Confidence 47888888888776655554 56777766532 22345666655555544
No 29
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=23.97 E-value=1.6e+02 Score=23.39 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=29.5
Q ss_pred EEEcCCccEEEEEeecCceeEEEEEcCceEEEeCCCCceEEEEE-----EEeCCEEEEEE
Q psy15136 18 LEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSVI-----TIDGDTMTHIQ 72 (107)
Q Consensus 18 I~~~Gd~~~~i~~~t~~kt~~~~F~lGeefe~~~~dG~~~k~t~-----t~eg~kLv~~~ 72 (107)
+..+|+ .+.+....++... -+|-+++..++||+.++..+ +.-|..++...
T Consensus 269 F~R~G~-DL~~~~~Isl~eA----llG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~g 323 (421)
T PTZ00037 269 FKREGG-DLFITKKISLYEA----LTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINN 323 (421)
T ss_pred cEEeCC-eEEEEEeCCHHHH----hcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCC
Confidence 344565 5555544443333 37888899999998766654 23355555433
No 30
>PF05100 Phage_tail_L: Phage minor tail protein L ; InterPro: IPR006487 This entry is represented by Bacteriophage lambda, GpL, a minor tail protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.25 E-value=96 Score=22.47 Aligned_cols=49 Identities=16% Similarity=0.334 Sum_probs=37.1
Q ss_pred CCCeEEEEEcCCccEEEEEeecCceeEEEEEcCceEEEeC--CCCce-EEEEEEEe
Q psy15136 12 VSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEET--PDGRK-VKSVITID 64 (107)
Q Consensus 12 ~~p~~~I~~~Gd~~~~i~~~t~~kt~~~~F~lGeefe~~~--~dG~~-~k~t~t~e 64 (107)
|.|+.+. -+ .|.|...+.......+|+|.-++|..+ +-+|. ++....|.
T Consensus 97 Adp~~e~---~~-~~~Ie~k~~e~~~~v~FeLssp~D~~g~~iP~Rqii~~~C~W~ 148 (206)
T PF05100_consen 97 ADPTQEF---VE-IWYIEQKSSENAEQVEFELSSPFDLDGAQIPARQIIANVCQWA 148 (206)
T ss_pred CCcccee---ee-eeeEEeecccCccEEEEEecCCccCCCccccceEeecccCcCc
Confidence 3455554 34 799999988888889999999999765 55777 56677777
No 31
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=22.92 E-value=2.9e+02 Score=19.65 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=27.3
Q ss_pred EEEEeCCEEEEEEeCCcceEEEEEEECCEEEE--------EEEE-CCEEEEEEEE
Q psy15136 60 VITIDGDTMTHIQKGDKETKIIRVFSDDEVKM--------TLTV-DDIVCTRIYK 105 (107)
Q Consensus 60 t~t~eg~kLv~~~~~~~~~~~~rev~g~~l~~--------t~~~-~~v~~kR~yk 105 (107)
-+-+.|+-+......||+....|-..||-+.+ +|+. ..++|.|+|.
T Consensus 99 Ry~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~ 153 (181)
T COG1791 99 RYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFT 153 (181)
T ss_pred EEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEee
Confidence 35556655555555555544444445666554 4444 4688999886
No 32
>TIGR02178 yeiP elongation factor P-like protein YeiP. This model represents the family of Escherichia coli protein YeiP, a close homolog of elongation factor P (TIGR00038) and probably itself a translation factor. Member of this family are found only in some Gammaproteobacteria, including E. coli and Vibrio cholerae.
Probab=22.65 E-value=1.9e+02 Score=20.54 Aligned_cols=38 Identities=11% Similarity=0.059 Sum_probs=27.5
Q ss_pred EeecCceeEEEEEcCceEEEeCCCCceEEEEEEEeC-CEEE
Q psy15136 30 SNSTFKNHAIKFKIGEEFDEETPDGRKVKSVITIDG-DTMT 69 (107)
Q Consensus 30 ~~t~~kt~~~~F~lGeefe~~~~dG~~~k~t~t~eg-~kLv 69 (107)
.....+..+.+|+.|+.+|...++- .+..+.+.+ +.++
T Consensus 43 nl~tG~~~e~tf~s~e~ve~a~le~--~~~qylY~dg~~~~ 81 (186)
T TIGR02178 43 DVPTGSKVEERFKADDMLDTVELLR--REASFSYKDGEEYV 81 (186)
T ss_pred EcCCCCeEEEEECCCCeEEEEEEEE--eEeEEEEeCCCeEE
Confidence 5566778889999999999888864 445565654 4554
No 33
>PRK14887 KEOPS complex Pcc1-like subunit; Provisional
Probab=22.64 E-value=1.8e+02 Score=17.75 Aligned_cols=17 Identities=24% Similarity=0.517 Sum_probs=8.8
Q ss_pred ceEEEEEEEeCCEEEEE
Q psy15136 55 RKVKSVITIDGDTMTHI 71 (107)
Q Consensus 55 ~~~k~t~t~eg~kLv~~ 71 (107)
...++.+..+|++|+..
T Consensus 35 ~rs~~~~~~~~~~l~i~ 51 (84)
T PRK14887 35 ERSKADLSLDGNTIVIT 51 (84)
T ss_pred CceEEEEEEeCCEEEEE
Confidence 44555555555555543
No 34
>PF11810 DUF3332: Domain of unknown function (DUF3332); InterPro: IPR021768 This family of proteins are functionally uncharacterised. This family is only found in bacteria.
Probab=22.27 E-value=2.9e+02 Score=19.42 Aligned_cols=52 Identities=15% Similarity=0.075 Sum_probs=31.4
Q ss_pred CCeEEEEEcCCccEEEEEeecCceeEEEEEcCceEEEeCCCCceEEEEEEEeCC
Q psy15136 13 SPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSVITIDGD 66 (107)
Q Consensus 13 ~p~~~I~~~Gd~~~~i~~~t~~kt~~~~F~lGeefe~~~~dG~~~k~t~t~eg~ 66 (107)
.|...+...++ ++..+.....-+.. .+.-+++-...-.|....++-++++++
T Consensus 88 ~~~~~v~~~n~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~G 139 (176)
T PF11810_consen 88 TPTKTVIKVNG-KLDVSLTENPYSIT-VFREIEGKTMEQIDDKTEQMWITYADG 139 (176)
T ss_pred CcccEEecCCc-eeehhhhhCcccee-eccCCCCceEEEecCCcceeEEEEcCC
Confidence 44566666666 77777553322222 455555555666777777888887743
No 35
>PF06905 FAIM1: Fas apoptotic inhibitory molecule (FAIM1); InterPro: IPR010695 This family consists of several fas apoptotic inhibitory molecule (FAIM) proteins. FAIM expression is upregulated in B cells by anti-Ig treatment that induces Fas-resistance, and overexpression of FAIM diminishes sensitivity to Fas-mediated apoptosis of B and non-B cell lines. FAIM is highly evolutionarily conserved and is widely expressed in murine tissues, suggesting that FAIM plays an important role in cellular physiology [].; GO: 0043066 negative regulation of apoptosis; PDB: 3MX7_A 2KW1_A 2KD2_A.
Probab=21.99 E-value=2.9e+02 Score=19.43 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=20.4
Q ss_pred Ccc-eEEEEEEECCEEEEEEEECCEEEEE
Q psy15136 75 DKE-TKIIRVFSDDEVKMTLTVDDIVCTR 102 (107)
Q Consensus 75 ~~~-~~~~rev~g~~l~~t~~~~~v~~kR 102 (107)
+|. ....++|.+|.-...++.++..|.-
T Consensus 124 nG~~iet~~eFvd~Gtet~F~l~~~~c~I 152 (177)
T PF06905_consen 124 NGEKIETEGEFVDDGTETHFELGGHPCYI 152 (177)
T ss_dssp TTCEE--EEEEETTCEEEEEEETTEEEEE
T ss_pred CCEEccccceecCCCcEEEEEECCEeEEE
Confidence 566 7778898877777888888887764
No 36
>PF09116 gp45-slide_C: gp45 sliding clamp, C terminal; InterPro: IPR015200 This domain is essential for the interaction of the gp45 sliding clamp with the corresponding polymerase. It adopts a DNA clamp fold, consisting of two alpha helices and two beta sheets - the fold is duplicated and has internal pseudo two-fold symmetry []. ; PDB: 1B8H_A 1B77_B 3U61_F 3U60_G 3U5Z_R 1CZD_B.
Probab=21.08 E-value=1.7e+02 Score=19.13 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=24.3
Q ss_pred hhhhhcCCCeEEEEEcCCccEEEEE----eecCceeEEEEEcC
Q psy15136 6 RKVGASVSPVLELEKDDSGTYTLHS----NSTFKNHAIKFKIG 44 (107)
Q Consensus 6 Rk~~~~~~p~~~I~~~Gd~~~~i~~----~t~~kt~~~~F~lG 44 (107)
|-.+...-|.+.|.-+|+ +..++. ....-+..+++.+|
T Consensus 16 kas~~l~l~dl~~~~~~g-kivv~~~~~~~~~~tsn~ysv~vg 57 (112)
T PF09116_consen 16 KASRTLGLPDLCFVNDDG-KIVVTDFNKDDKNDTSNSYSVEVG 57 (112)
T ss_dssp HHHHHCT--EEEEEEETT-EEEEEEE-TTSTTS-S-SEEEEEE
T ss_pred HHHHhcCCCeEEEEecCC-EEEEEccccccccCCCCceEEEEe
Confidence 333444468999988887 999987 55556666778887
No 37
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=20.89 E-value=1.4e+02 Score=18.97 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=16.6
Q ss_pred ccEEEEEeecCceeEEEEEc
Q psy15136 24 GTYTLHSNSTFKNHAIKFKI 43 (107)
Q Consensus 24 ~~~~i~~~t~~kt~~~~F~l 43 (107)
|.|++....+..+...+|.|
T Consensus 78 G~YTf~a~N~~~~~s~tF~l 97 (101)
T cd05860 78 GTYTFLVSNSDASASVTFNV 97 (101)
T ss_pred cEEEEEEECCCCeEEEEEEE
Confidence 58888888888888888876
No 38
>PRK12423 LexA repressor; Provisional
Probab=20.88 E-value=96 Score=21.76 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=24.2
Q ss_pred EEEEeCCEEEE-EEeCCcceEEE---EEEECCEEEEEEEECCEEEEEEEEe
Q psy15136 60 VITIDGDTMTH-IQKGDKETKII---RVFSDDEVKMTLTVDDIVCTRIYKP 106 (107)
Q Consensus 60 t~t~eg~kLv~-~~~~~~~~~~~---rev~g~~l~~t~~~~~v~~kR~ykr 106 (107)
.+...||.|.. .. .+|...++ ....+|.+++...-+.+++||+++.
T Consensus 116 ~l~V~GdSM~~~~i-~~Gd~viv~~~~~~~~Gdivv~~~~~~~~vKrl~~~ 165 (202)
T PRK12423 116 LLQVQGDSMIDDGI-LDGDLVGVHRSPEARDGQIVVARLDGEVTIKRLERS 165 (202)
T ss_pred EEEEecCcCCCCCc-CCCCEEEEeCCCcCCCCCEEEEEECCEEEEEEEEEe
Confidence 34556777752 11 12332222 2344555665544456788888764
No 39
>PF14250 AbrB-like: AbrB-like transcriptional regulator
Probab=20.80 E-value=63 Score=19.46 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCccEEEEEeecCceeEEEEEcCceEEEeC
Q psy15136 13 SPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEET 51 (107)
Q Consensus 13 ~p~~~I~~~Gd~~~~i~~~t~~kt~~~~F~lGeefe~~~ 51 (107)
+|+..++.-+||+.-|-.. =|..+..+.|.|||...
T Consensus 28 ~~syr~~Vq~NGnLLIG~A---YT~~m~L~PGdEFeI~L 63 (71)
T PF14250_consen 28 KASYRVSVQGNGNLLIGSA---YTKQMGLKPGDEFEIKL 63 (71)
T ss_pred CceEEEEEecCCCEEEcHH---HHHHhCCCCCCEEEEEe
Confidence 5667776666656666543 33456678999998653
No 40
>PF02941 FeThRed_A: Ferredoxin thioredoxin reductase variable alpha chain; InterPro: IPR004207 Ferredoxin thioredoxin reductase is a [4FE-4S] protein which plays an important role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin), regulating enzymes by reduction of specific disulphide groups. It catalyses the light-dependent activation of several photosynthetis enzymes. Ferredoxin thioredoxin reductase is a heterodimer of subunit a and subunit b. Subunit a is the variable subunit, and b is the catalytic chain. This family is the alpha chain.; GO: 0008937 ferredoxin-NAD(P) reductase activity, 0015979 photosynthesis, 0009536 plastid; PDB: 2PUK_B 2PVO_B 2PVG_B 1DJ7_B 2PVD_B 2PU9_B 2PUO_B.
Probab=20.60 E-value=43 Score=19.95 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=16.9
Q ss_pred CceEEEeCCCCceEEEEEEEeCCEE
Q psy15136 44 GEEFDEETPDGRKVKSVITIDGDTM 68 (107)
Q Consensus 44 Geefe~~~~dG~~~k~t~t~eg~kL 68 (107)
+++||..++.|......-.|+|-.+
T Consensus 21 ~~~fDl~G~EGev~~~v~~wkGr~i 45 (67)
T PF02941_consen 21 NPPFDLKGMEGEVKQIVTDWKGRPI 45 (67)
T ss_dssp TS-EE-TT-EEEEEEE-SEETTEE-
T ss_pred CCCccccCCEEEEEEEEeecCCcEe
Confidence 7999999999988887778888655
No 41
>PF14061 Mtf2_C: Polycomb-like MTF2 factor 2
Probab=20.59 E-value=1.8e+02 Score=16.33 Aligned_cols=24 Identities=38% Similarity=0.702 Sum_probs=14.9
Q ss_pred EcCceEEE----eCCCCceEEEEEEEeCC
Q psy15136 42 KIGEEFDE----ETPDGRKVKSVITIDGD 66 (107)
Q Consensus 42 ~lGeefe~----~~~dG~~~k~t~t~eg~ 66 (107)
--||.|.. .++|| +++-.+.|||.
T Consensus 21 ~~GE~~~VlArRV~~dG-~vQYLvEWeg~ 48 (50)
T PF14061_consen 21 ACGEKYRVLARRVTPDG-KVQYLVEWEGA 48 (50)
T ss_pred ccCCeeEEEEEEEcCCC-cEEEEEEecCc
Confidence 34555543 35777 57777888774
No 42
>PRK14578 elongation factor P; Provisional
Probab=20.46 E-value=2.3e+02 Score=20.09 Aligned_cols=41 Identities=17% Similarity=0.142 Sum_probs=28.7
Q ss_pred EEEEeecCceeEEEEEcCceEEEeCCCCceEEEEEEEe-CCEEE
Q psy15136 27 TLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSVITID-GDTMT 69 (107)
Q Consensus 27 ~i~~~t~~kt~~~~F~lGeefe~~~~dG~~~k~t~t~e-g~kLv 69 (107)
.++.....+..+.+|+.|+.+|...++-+.. .+.+. |+.++
T Consensus 42 klknl~tG~~~e~tf~s~d~ve~a~ve~~~~--qylY~dg~~~~ 83 (187)
T PRK14578 42 KYRNLLTGQVLEKTFRSGDKVEEADFERHKG--QFLYADGDRGV 83 (187)
T ss_pred EEEECCCCCEEEEEECCCCEEEEeEEEEeEe--EEEEeCCCEEE
Confidence 4556667788899999999999888865444 44443 45554
No 43
>PRK10276 DNA polymerase V subunit UmuD; Provisional
Probab=20.45 E-value=85 Score=20.62 Aligned_cols=23 Identities=4% Similarity=0.121 Sum_probs=12.8
Q ss_pred EECCEEEEEEEECCEEEEEEEEe
Q psy15136 84 FSDDEVKMTLTVDDIVCTRIYKP 106 (107)
Q Consensus 84 v~g~~l~~t~~~~~v~~kR~ykr 106 (107)
..+|.+++-..-+.+++||++++
T Consensus 80 ~~~Gdivv~~~~g~~~vKrl~~~ 102 (139)
T PRK10276 80 ASHGDIVIAAVDGEFTVKKLQLR 102 (139)
T ss_pred CCCCCEEEEEECCEEEEEEEEEC
Confidence 34455555433345777887653
No 44
>TIGR00038 efp translation elongation factor P. function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria.
Probab=20.03 E-value=3.2e+02 Score=19.08 Aligned_cols=43 Identities=23% Similarity=0.316 Sum_probs=28.2
Q ss_pred EEEEEeecCceeEEEEEcCceEEEeCCCCceEEEEEEEeCCEEE
Q psy15136 26 YTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSVITIDGDTMT 69 (107)
Q Consensus 26 ~~i~~~t~~kt~~~~F~lGeefe~~~~dG~~~k~t~t~eg~kLv 69 (107)
..++.....+..+.+|..++.++...++-+.+...+ .+|+.++
T Consensus 38 vk~knL~tG~~~e~~f~~~~kve~~~~e~~~~q~ly-~dgd~~~ 80 (184)
T TIGR00038 38 VKLKNLLTGKVLEKTFRSGEKVEKADVEEREMQYLY-KDGDSYV 80 (184)
T ss_pred EEEEECCCCCEEEEEeCCCCEEEcccEEeEEEEEEE-ECCCEEE
Confidence 444555566778889999999987777655554444 3445554
Done!