RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15136
(107 letters)
>gnl|CDD|235383 PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional.
Length = 147
Score = 30.0 bits (69), Expect = 0.13
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 20/59 (33%)
Query: 59 SVITIDGDTMTHIQKG----------DKET-------KII--RVFSDDEVKMTLTVDDI 98
SV T+DG+ + I KG D E KI+ R+F D+E KM L+V D+
Sbjct: 12 SV-TVDGEVVGEIGKGLLVLVGVEKGDTEEDADYLAEKILNLRIFEDEEGKMNLSVQDV 69
>gnl|CDD|224407 COG1490, Dtd, D-Tyr-tRNAtyr deacylase [Translation, ribosomal
structure and biogenesis].
Length = 145
Score = 29.1 bits (66), Expect = 0.23
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 19/63 (30%)
Query: 55 RKVKSVITIDGDTMTHIQKG----------DKETKI---------IRVFSDDEVKMTLTV 95
R + +++DG+ + I +G D E +R+F D+E KM L+V
Sbjct: 7 RVSSASVSVDGEVVGAIGQGLLVLVGVTHDDTEEDADYLAEKILNLRIFEDEEGKMNLSV 66
Query: 96 DDI 98
D+
Sbjct: 67 QDV 69
>gnl|CDD|223970 COG1040, ComFC, Predicted amidophosphoribosyltransferases [General
function prediction only].
Length = 225
Score = 29.3 bits (66), Expect = 0.25
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 12/73 (16%)
Query: 18 LEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSVITID-----GDTMTHIQ 72
KD S L + +N F++ + +E K+V+ +D G T+
Sbjct: 152 RVKDTSPQQGLKALERRRNLKGAFRLKKGIEEP-------KNVLLVDDVYTTGATLKEAA 204
Query: 73 KGDKETKIIRVFS 85
K +E RVF
Sbjct: 205 KLLREAGAKRVFV 217
>gnl|CDD|215686 pfam00061, Lipocalin, Lipocalin / cytosolic fatty-acid binding
protein family. Lipocalins are transporters for small
hydrophobic molecules, such as lipids, steroid hormones,
bilins, and retinoids. The family also encompasses the
enzyme prostaglandin D synthase (EC:5.3.99.2). Alignment
subsumes both the lipocalin and fatty acid binding
protein signatures from PROSITE. This is supported on
structural and functional grounds. The structure is an
eight-stranded beta barrel.
Length = 140
Score = 28.9 bits (65), Expect = 0.31
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 21/91 (23%)
Query: 31 NSTFKNHAIKFKIGEEFDEETPDGRKVKSVITIDGDTM----THIQKGDKETKIIRVFSD 86
+ TFK K+G GRKVK V+T D D K K T + ++
Sbjct: 53 SVTFKKTEEPGKLGVN----EAGGRKVK-VLTTDYDNYLIFYQKGDKDGKTTIVRELYGR 107
Query: 87 D------------EVKMTLTVDDIVCTRIYK 105
D + L +D+ R+Y+
Sbjct: 108 DPELSPELLEKFKKFLKELGIDEENIVRLYQ 138
>gnl|CDD|238819 cd01641, Bacterial_IMPase_like_1, Predominantly bacterial family
of Mg++ dependend phosphatases, related to inositol
monophosphatases. These enzymes may dephosphorylate
fructose-1,6-bisphosphate, inositol monophospate,
3'-phosphoadenosine-5'-phosphate, or similar
substrates.
Length = 248
Score = 28.0 bits (63), Expect = 0.75
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 34 FKNHAIKFKIGEEFDEETPDGRKVKSVITIDG 65
F +H I +GEEF E D V + IDG
Sbjct: 54 FPDHGI---LGEEFGNEGGDAGYVWVLDPIDG 82
>gnl|CDD|148130 pfam06330, TRI5, Trichodiene synthase (TRI5). This family consists
of several fungal trichodiene synthase proteins
(EC:4.2.3.6). TRI5 encodes the enzyme trichodiene
synthase, which has been shown to catalyze the first
step in the trichothecene pathways of Fusarium and
Trichothecium species.
Length = 376
Score = 28.3 bits (63), Expect = 0.77
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 45 EEFDEETPDGRKVKSVITIDGDTMTH-IQKGDKET-----KIIRVFSDDEVKMTLTVD 96
+EFD+E VK+ +T D T+ ++K ++T +++ VFSD + ++ T++
Sbjct: 232 KEFDDERDQISLVKNYVTCDEITLDQALEKLTQDTLHSSKQMVAVFSDKDPQVMDTIE 289
>gnl|CDD|222477 pfam13965, SID-1_RNA_chan, dsRNA-gated channel SID-1. This is a
family of proteins that are transmembrane dsRNA-gated
channels. They passively transport dsRNA into cells and
do not act as ATP-dependent pumps. They are required for
systemic RNA interference.
Length = 567
Score = 28.1 bits (63), Expect = 0.79
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 73 KGDKETKIIRVFSDDEVKMTLTVDDIVC 100
+ + I + SDD++ MT++V + C
Sbjct: 12 PQNVSSVHIELDSDDDICMTVSVQNANC 39
>gnl|CDD|235041 PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 447
Score = 26.7 bits (60), Expect = 2.6
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 44 GEEFDEETPDGRKVKSVITIDGDT 67
G EFDE P + VK+++ G+T
Sbjct: 355 GNEFDELVPYLKNVKAMVVF-GET 377
>gnl|CDD|202294 pfam02580, Tyr_Deacylase, D-Tyr-tRNA(Tyr) deacylase. This family
comprises of several D-Tyr-tRNA(Tyr) deacylase
proteins. Cell growth inhibition by several d-amino
acids can be explained by an in vivo production of
d-aminoacyl-tRNA molecules. Escherichia coli and yeast
cells express an enzyme, d-Tyr-tRNA(Tyr) deacylase,
capable of recycling such d-aminoacyl-tRNA molecules
into free tRNA and d-amino acid. Accordingly, upon
inactivation of the genes of the above deacylases, the
toxicity of d-amino acids increases. Orthologues of the
deacylase are found in many cells.
Length = 144
Score = 26.3 bits (59), Expect = 2.6
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 82 RVFSDDEVKMTLTVDDI 98
R+F D+E KM L++ D+
Sbjct: 52 RIFEDEEGKMNLSLKDV 68
>gnl|CDD|172360 PRK13833, PRK13833, conjugal transfer protein TrbB; Provisional.
Length = 323
Score = 26.3 bits (58), Expect = 3.2
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
Query: 43 IGEEFD-----EETPDGRKVKSVITIDG 65
IGE D E T GR+V+ VI ++G
Sbjct: 275 IGEAVDLIVSIERTGKGRRVREVIHVEG 302
>gnl|CDD|235424 PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.
Length = 554
Score = 26.2 bits (59), Expect = 3.9
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 5/21 (23%)
Query: 46 EFDEET-----PDGRKVKSVI 61
+D +T DGRKVK I
Sbjct: 440 TYDPDTLSGNPADGRKVKGTI 460
>gnl|CDD|220762 pfam10452, TCO89, TORC1 subunit TCO89. TC089 is a component of the
TORC1 complex. TORC1 is responsible for a wide range of
rapamycin-sensitive cellular activities.
Length = 459
Score = 26.0 bits (57), Expect = 4.2
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 2 GLITRKVGASVSPVLEL------EKDDSGTYTLHSNSTFKNHAIKFKI--GEEFDEETPD 53
GLI R+ G S VL+L +DS T L SNS +H+I E+FD
Sbjct: 80 GLIPRR-GRSTHSVLDLHDADEPVDNDSTTDELDSNSALPDHSIDHSKTTNEDFDGSRSS 138
Query: 54 G---RKVKSVITI--DGDTMTHIQKGDKE 77
+ + TI +TH K D
Sbjct: 139 SPIEKVLNVENTIHESNHPITHDNKKDII 167
>gnl|CDD|143218 cd05741, Ig_CEACAM_D1_like, First immunoglobulin (Ig)-like domain
of carcinoembryonic antigen (CEA) related cell adhesion
molecule (CEACAM) and similar proteins.
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1
in carcinoembryonic antigen (CEA) related cell adhesion
molecule (CEACAM) protein subfamily-like. The CEA
family is a group of anchored or secreted
glycoproteins, expressed by epithelial cells,
leukocytes, endothelial cells and placenta. The CEA
family is divided into the CEACAM and
pregnancy-specific glycoprotein (PSG) subfamilies. This
group represents the CEACAM subfamily. CEACAM1 has many
important cellular functions, it is a cell adhesion
molecule, and a signaling molecule that regulates the
growth of tumor cells, it is an angiogenic factor, and
is a receptor for bacterial and viral pathogens,
including mouse hepatitis virus (MHV). In mice, four
isoforms of CEACAM1 generated by alternative splicing
have either two [D1, D4] or four [D1-D4] Ig-like
domains on the cell surface. This family corresponds to
the D1 Ig-like domain. Also belonging to this group is
the N-terminal immunoglobulin (Ig)-like domain of the
signaling lymphocyte activation molecule (SLAM) family,
CD84-like family. The SLAM family is a group of
immune-cell specific receptors that can regulate both
adaptive and innate immune responses. SLAM family
proteins are organized as an extracellular domain with
having two or four Ig-like domains, a single
transmembrane segment, and a cytoplasmic region having
tyr-based motifs. The extracellular domain is organized
as a membrane-distal Ig variable (IgV) domain that is
responsible for ligand recognition and a
membrane-proximal truncated Ig constant-2 (IgC2)
domain.
Length = 92
Score = 25.0 bits (55), Expect = 4.9
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 18 LEKDDSGTYTLHSNST 33
L K+DSGTYTL ST
Sbjct: 64 LTKEDSGTYTLQIIST 79
>gnl|CDD|129358 TIGR00256, TIGR00256, D-tyrosyl-tRNA(Tyr) deacylase. This
homodimeric enzyme appears able to cleave any D-amino
acid (and glycine, which does not have distinct D/L
forms) from charged tRNA. The name reflects
characterization with respect to D-Tyr on tRNA(Tyr) as
established in the literature, but substrate
specificity seems much broader [Protein synthesis, tRNA
aminoacylation].
Length = 145
Score = 25.6 bits (56), Expect = 5.0
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 61 ITIDGDTMTHIQKGDKETKIIRVFSDDEVKMTLTVDDI 98
+ D D K ++ R+FSD E KM L V
Sbjct: 33 VEKD-DDEQKADKLAEKVLNYRIFSDSEGKMNLNVQQA 69
>gnl|CDD|238316 cd00563, Dtyr_deacylase, D-Tyrosyl-tRNAtyr deacylases; a class of
tRNA-dependent hydrolases which are capable of
hydrolyzing the ester bond of D-Tyrosyl-tRNA reducing
the level of cellular D-Tyrosine while recycling the
peptidyl-tRNA; found in bacteria and in eukaryotes but
not in archea; beta barrel-like fold structure; forms
homodimers in which two surface cavities serve as the
active site for tRNA binding.
Length = 145
Score = 25.3 bits (56), Expect = 5.9
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 19/63 (30%)
Query: 55 RKVKSVITIDGDTMTHIQKG----------DKETKI---------IRVFSDDEVKMTLTV 95
R ++ +T+DG+ + I +G D E +R+F D+E KM L+V
Sbjct: 7 RVSEASVTVDGEVVGAIGQGLLVLVGVTHDDTEEDAEYLARKILNLRIFEDEEGKMNLSV 66
Query: 96 DDI 98
D+
Sbjct: 67 KDV 69
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 25.4 bits (56), Expect = 6.6
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 61 ITIDGDTMTHIQKGDKETKIIRVFSD 86
I IDG +T + + RVF D
Sbjct: 63 ILIDGVDVTKKSVAKRANLLARVFQD 88
>gnl|CDD|227281 COG4945, COG4945, Membrane-anchored protein predicted to be
involved in regulation of amylopullulanase [Carbohydrate
transport and metabolism].
Length = 570
Score = 25.7 bits (56), Expect = 6.8
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 17 ELEKDDSGTYTLHSNSTFKNHAI 39
+ G Y S FK +
Sbjct: 240 SGDDVGPGVYEYPSGPVFKMGFV 262
>gnl|CDD|143461 cd07143, ALDH_AldA_AN0554, Aspergillus nidulans aldehyde
dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent
aldehyde dehydrogenase (AldA) of Aspergillus nidulans
(locus AN0554), and other similar sequences, are present
in this CD.
Length = 481
Score = 25.2 bits (55), Expect = 8.9
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 34 FKNHAIKFKIGEEFDEETPDGRKVKSVITIDGDTMTHIQKGDKE 77
FK A K K+G+ F E+T G +V S I + M++I+ G E
Sbjct: 308 FKEKAKKLKVGDPFAEDTFQGPQV-SQIQYE-RIMSYIESGKAE 349
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.135 0.373
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,338,857
Number of extensions: 449619
Number of successful extensions: 373
Number of sequences better than 10.0: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 40
Length of query: 107
Length of database: 10,937,602
Length adjustment: 72
Effective length of query: 35
Effective length of database: 7,744,114
Effective search space: 271043990
Effective search space used: 271043990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.3 bits)