RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15136
(107 letters)
>1ftp_A Muscle fatty acid binding protein; binding protein(fatty acid);
2.20A {Schistocerca gregaria} SCOP: b.60.1.2 PDB:
2flj_A*
Length = 133
Score = 108 bits (271), Expect = 4e-32
Identities = 57/106 (53%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VG I RK G ++SPV+ELE D + L S + KN FK+GEEFDEET DGRKVKS
Sbjct: 26 VGAIERKAGLALSPVIELEILDGDKFKLTSKTAIKNTEFTFKLGEEFDEETLDGRKVKST 85
Query: 61 ITIDGD-TMTHIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
IT DG + H QKGD T IIR FS ++ +T+ + D+V TRIYK
Sbjct: 86 ITQDGPNKLVHEQKGDHPTIIIREFSKEQCVITIKLGDLVATRIYK 131
>1o8v_A Fatty acid binding protein homolog; lipid binding protein, hydatid
disease, fatty-acid transport; HET: PLM; 1.60A
{Echinococcus granulosus} SCOP: b.60.1.2
Length = 134
Score = 106 bits (267), Expect = 2e-31
Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
V +TRK+G V P L + G Y + S STFK FK+GE+F E TPD R+V S+
Sbjct: 26 VDFVTRKMGNLVKPNLIVTDLGGGKYKMRSESTFKTTECSFKLGEKFKEVTPDSREVASL 85
Query: 61 ITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
IT++ M H Q K T I RV +E+K T+ VD++VC R Y
Sbjct: 86 ITVENGVMKHEQDDKTKVTYIERVVEGNELKATVKVDEVVCVRTYS 131
>1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly
unsaturated fatty acid, lipid binding protein; HET: HXA;
2.10A {Homo sapiens} SCOP: b.60.1.2 PDB: 1fe3_A* 1jjx_A
Length = 131
Score = 101 bits (253), Expect = 2e-29
Identities = 47/106 (44%), Positives = 65/106 (61%), Gaps = 2/106 (1%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VG TR+VG P + + ++ + + STFKN I F++GEEFDE T D R KSV
Sbjct: 25 VGFATRQVGNVTKPTVIISQEG-DKVVIRTLSTFKNTEISFQLGEEFDETTADDRNCKSV 83
Query: 61 ITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+++DGD + HIQK D KET +R D ++ MTLT D+V R Y+
Sbjct: 84 VSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTFGDVVAVRHYE 129
>3p6d_A Fatty acid-binding protein, adipocyte; lipocalin, beta barrel,
lipid BI protein; HET: ZGB; 1.06A {Homo sapiens} PDB:
3p6c_A* 3p6e_A* 3p6f_A* 3p6g_A* 3p6h_A* 3rzy_A 2hnx_A*
3fr4_A* 2nnq_A* 1tow_A* 1tou_A* 3fr2_A* 3fr5_A* 1adl_A*
1alb_A 1lib_A 1lic_A* 1lid_A* 1lie_A* 1lif_A* ...
Length = 139
Score = 101 bits (253), Expect = 2e-29
Identities = 45/106 (42%), Positives = 61/106 (57%), Gaps = 2/106 (1%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VG TRKV P + + + T+ S STFKN I F +G+EFDE T D RKVKS
Sbjct: 33 VGFATRKVAGMAKPNMIISVNG-DVITIKSESTFKNTEISFILGQEFDEVTADDRKVKST 91
Query: 61 ITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
IT+DG + H+QK D K T I R DD++ + + + TR+Y+
Sbjct: 92 ITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVMKGVTSTRVYE 137
>3q6l_A Fatty acid-binding protein, adipocyte; lipid chaperone, lipid
binding protein; 1.40A {Homo sapiens} PDB: 2q9s_A*
2qm9_A*
Length = 152
Score = 102 bits (254), Expect = 2e-29
Identities = 45/106 (42%), Positives = 61/106 (57%), Gaps = 2/106 (1%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VG TRKV P + + + T+ S STFKN I F +G+EFDE T D RKVKS
Sbjct: 46 VGFATRKVAGMAKPNMIISVNG-DVITIKSESTFKNTEISFILGQEFDEVTADDRKVKST 104
Query: 61 ITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
IT+DG + H+QK D K T I R DD++ + + + TR+Y+
Sbjct: 105 ITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVMKGVTSTRVYE 150
>2lba_A BABP protein; ileal bIle acid binding protein, lipid binding
protein; HET: CHO; NMR {Gallus gallus}
Length = 136
Score = 101 bits (252), Expect = 4e-29
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 3/105 (2%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
+ ++G + V E+ ++ + + F I +E D ET GRK K+
Sbjct: 28 LPADKIEMGRNCKIVTEVVQNGNDFTWTQHFPGGRTTTNSFTIDKEADMETMGGRKFKAT 87
Query: 61 ITIDGDTMTHIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+ ++G + S ++ T +V R K
Sbjct: 88 VKMEGGKIVADF---PNYHHTAEISGGKLVEISTSSGVVYKRTSK 129
>1mdc_A Insect fatty acid binding protein; HET: PLM; 1.75A {Manduca sexta}
SCOP: b.60.1.2
Length = 132
Score = 99 bits (249), Expect = 7e-29
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
+ + S P ++E + +Y+ S + FK G EFD+ G VKS+
Sbjct: 25 LSDDKIQALVSDKPTQKMEANG-DSYSNTSTGGGGAKTVSFKSGVEFDDVIGAGDSVKSM 83
Query: 61 ITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVD--DIVCTRIYK 105
T+DG+ +TH+ KGD + ++ D++ +T+T D V R YK
Sbjct: 84 YTVDGNVVTHVVKGDAGVATFKKEYNGDDLVVTITSSNWDGVARRYYK 131
>3ppt_A Sodium-calcium exchanger; fatty acid transporter, lipid binding
proteins, squid nerve, regulatory factor, beta-sandwich,
fatty acid; HET: PAM; 1.28A {Loligo pealei} PDB: 3pp6_A*
Length = 133
Score = 100 bits (249), Expect = 8e-29
Identities = 44/105 (41%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VG++ RK+ + +P E++ D ++++ +++TFK I F IG+EFDE T DGRK+K+
Sbjct: 25 VGMVMRKMANAATPTQEIKIDG-DSWSIKTSTTFKTTDISFTIGQEFDETTGDGRKIKTT 83
Query: 61 ITIDGDTMTHIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
IDG+ M QKG ++ + R D ++ M L V+D+VCTRIYK
Sbjct: 84 CKIDGNAMIQDQKGSPDSILSREVKDGKMHMILKVNDVVCTRIYK 128
>3rsw_A Fatty acid-binding protein, heart; lipid carrier, molecular
chaperone, heart fatty acid binding type 2 diabetes,
atherosclerosis, chaperone; 2.60A {Homo sapiens} PDB:
1g5w_A 1hmr_A* 1hms_A* 1hmt_A* 2hmb_A* 1bwy_A
Length = 158
Score = 100 bits (249), Expect = 1e-28
Identities = 49/106 (46%), Positives = 68/106 (64%), Gaps = 2/106 (1%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VG TR+V + P +EK+ TL ++STFKN I FK+G EFDE T D RKVKS+
Sbjct: 51 VGFATRQVASMTKPTTIIEKNG-DILTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSI 109
Query: 61 ITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+T+DG + H+QK D +ET ++R D ++ +TLT VCTR Y+
Sbjct: 110 VTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTHGTAVCTRTYE 155
>1eal_A Gastrotropin, ileal lipid binding protein; intracellular lipid
binding protein, bIle acid binding, ileal epithelium,
fatty acid binding protein; NMR {Sus scrofa} SCOP:
b.60.1.2 PDB: 1eio_A* 1o1u_A 1o1v_A*
Length = 127
Score = 99.1 bits (247), Expect = 1e-28
Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 3/105 (2%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
+ ++ + E+++D + F IG+E D ET G+K K+
Sbjct: 23 LPSDAIDKARNLKIISEVKQDGQNFTWSQQYPGGHSITNTFTIGKECDIETIGGKKFKAT 82
Query: 61 ITIDGDTMTHIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+ ++G + D ++ TV + R+ K
Sbjct: 83 VQMEGGKVVVNS---PNYHHTAEIVDGKLVEVSTVGGVSYERVSK 124
>2wut_A Myelin P2 protein; transport, lipid-binding, fatty acid binding
protein, peripheral membrane protein; HET: PLM; 1.85A
{Homo sapiens} PDB: 1pmp_A*
Length = 133
Score = 98.5 bits (245), Expect = 3e-28
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 2/106 (1%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VGL TRK+G P + + K T+ + STFKN I FK+G+EF+E T D RK KS+
Sbjct: 27 VGLATRKLGNLAKPTVIISKKG-DIITIRTESTFKNTEISFKLGQEFEETTADNRKTKSI 85
Query: 61 ITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+T+ ++ +Q+ D KET I R + ++ + +VCTRIY+
Sbjct: 86 VTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKMKGVVCTRIYE 131
>2a0a_A DER F 13; beta barrel, helix, allergen; NMR {Dermatophagoides
farinae} SCOP: b.60.1.2
Length = 131
Score = 97.7 bits (243), Expect = 6e-28
Identities = 45/106 (42%), Positives = 63/106 (59%), Gaps = 2/106 (1%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VG + + ++ P E+ ++ Y S STFKN KFK+GEEF+E+ DG++VK+V
Sbjct: 25 VGFMVKTAAKTLKPTFEVAIEN-DQYIFRSLSTFKNTEAKFKLGEEFEEDRADGKRVKTV 83
Query: 61 ITIDGDTM-THIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
I +GD Q GDKE KIIR F+ DEV +T + D + R YK
Sbjct: 84 IQKEGDNKFVQTQFGDKEVKIIREFNGDEVVVTASCDGVTSVRTYK 129
>2qo4_A Liver-basic fatty acid binding protein; liver bIle acid-binding
protein, BABP, fatty acid-binding PR FABP, cholic acid
cholate, bIle acid; HET: CHD; 1.50A {Danio rerio} PDB:
2qo6_A* 2qo5_A* 2ftb_A* 2ft9_A*
Length = 126
Score = 96.8 bits (241), Expect = 1e-27
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
+ K+ V PV E++++ +T+ S + K F IG+E + T DG+K+K +
Sbjct: 24 LPEEVIKLAKDVKPVTEIQQNG-SDFTITSKTPGKTVTNSFTIGKEAEITTMDGKKLKCI 82
Query: 61 ITIDGDTMTHIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+ +DG + I+ E+ TLTV R K
Sbjct: 83 VKLDGGKLVCRT---DRFSHIQEIKAGEMVETLTVGGTTMIRKSK 124
>1ifc_A Intestinal fatty acid binding protein; lipid-binding protein; 1.19A
{Rattus norvegicus} SCOP: b.60.1.2 PDB: 1ael_A 1icm_A*
1ifb_A 1ure_A* 2ifb_A* 3akn_A* 1icn_A* 1t8v_A 1dc9_A
1a57_A 1kzx_A 1kzw_A 3akm_A* 3ifb_A 1sa8_A
Length = 132
Score = 96.9 bits (241), Expect = 1e-27
Identities = 27/108 (25%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
+ ++ RK+GA + L + ++ +T+ +S F+N + F++G +F DG ++
Sbjct: 24 INVVKRKLGAHDNLKLTITQEG-NKFTVKESSNFRNIDVVFELGVDFAYSLADGTELTGT 82
Query: 61 ITIDGDTMTHIQK---GDKETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
T++G+ + K KE +R S +E+ T T + + RI+K
Sbjct: 83 WTMEGNKLVGKFKRVDNGKELIAVREISGNELIQTYTYEGVEAKRIFK 130
>1b56_A Fatty acid binding protein; lipid-binding, fatty acid transport,
beta barrel, lipid binding protein; HET: PLM; 2.05A
{Homo sapiens} SCOP: b.60.1.2 PDB: 1jjj_A
Length = 135
Score = 97.0 bits (241), Expect = 1e-27
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VG+ RK+GA P + D T+ + ST K +GE+F+E T DGRK ++V
Sbjct: 28 VGIALRKMGAMAKPDCIITCDG-KNLTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTV 86
Query: 61 ITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+ Q+ D KE+ I R D ++ + ++++ CTRIY+
Sbjct: 87 CNFTDGALVQHQEWDGKESTITRKLKDGKLVVECVMNNVTCTRIYE 132
>4a60_A Fatty acid-binding protein 9 testis lipid-binding protein, TLBP,
testis-type fatty...; transport protein; 1.53A {Homo
sapiens} PDB: 3nr3_A* 1yiv_A*
Length = 154
Score = 97.4 bits (242), Expect = 2e-27
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 2/106 (1%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
V R + V P + + D T+ + S+F++ I FK+GEEFDE T D RKVKS
Sbjct: 48 VNFAARNMAGLVKPTVTISVDG-KMMTIRTESSFQDTKISFKLGEEFDETTADNRKVKST 106
Query: 61 ITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
IT++ +M H+QK KET I R D+++ + +++IV TRIY+
Sbjct: 107 ITLENGSMIHVQKWLGKETTIKRKIVDEKMVVECKMNNIVSTRIYE 152
>1lpj_A Retinol-binding protein IV, cellular; cellular retinol-binding
protein, CRBP, vitamin A, ILBPS, transport protein;
2.00A {Homo sapiens} SCOP: b.60.1.2
Length = 133
Score = 96.6 bits (240), Expect = 2e-27
Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 4/108 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETP--DGRKVK 58
+ TRK+ + P +E++ ++T+H+NS+ +N+ +KFK+GEEFDE+ D RK K
Sbjct: 25 IDFATRKIAKLLKPQKVIEQNG-DSFTIHTNSSLRNYFVKFKVGEEFDEDNRGLDNRKCK 83
Query: 59 SVITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
S++ D D +T IQKG+ K D++ + + + VC + ++
Sbjct: 84 SLVIWDNDRLTCIQKGEKKNRGWTHWIEGDKLHLEMFCEGQVCKQTFQ 131
>1p6p_A Fatty acid-binding protein, liver; beta barrel, lipid binding
protein; 2.50A {Bufo arenarum} SCOP: b.60.1.2
Length = 125
Score = 96.1 bits (239), Expect = 2e-27
Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
+ KV V+PV+E+E++ + + S + + H+ F +G+E + + DG+K+K
Sbjct: 23 LPEDIIKVAKDVNPVIEIEQNG-NEFVVTSKTPKQTHSNSFTVGKESEITSMDGKKIKVT 81
Query: 61 ITIDGDTMTHIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+ ++G + + I+ + DE+ +T+ TR K
Sbjct: 82 VQLEGGKLICKS---DKFSHIQEVNGDEMVEKITIGSSTLTRKSK 123
>1mvg_A Liver basic fatty acid binding protein; beta-barrel, calycin, ten
antiparallel beta strands, helix- turn-helix motif,
transport protein; NMR {Gallus gallus} SCOP: b.60.1.2
PDB: 1tvq_A 1tw4_A* 1zry_A 2jn3_A* 2k62_A*
Length = 125
Score = 95.3 bits (237), Expect = 5e-27
Identities = 18/105 (17%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
+ K+ + P++E+++ + + S + + F +G+E D T DG+K+K
Sbjct: 23 LPEDLIKMARDIKPIVEIQQKG-DDFVVTSKTPRQTVTNSFTLGKEADITTMDGKKLKCT 81
Query: 61 ITIDGDTMTHIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+ + + + + +E+ T+T + R K
Sbjct: 82 VHLANGKLVTKSEKFSHE---QEVKGNEMVETITFGGVTLIRRSK 123
>3vg7_A Fatty acid-binding protein, liver; lfabp, S-SAD, copper kalpha,
palmitic acid, lipid binding PR; HET: PLM; 1.44A {Homo
sapiens} PDB: 3b2i_A* 3b2j_A* 3b2k_A* 3b2l_A* 3stk_A*
3stm_X* 3stn_A 3vg2_A* 3vg3_A* 3vg4_A* 3vg5_A* 3vg6_A*
3b2h_A* 2py1_A 2l67_A 2l68_A 2lkk_A* 2ju3_A 2ju7_A
2ju8_A* ...
Length = 132
Score = 95.0 bits (236), Expect = 9e-27
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
+ + G + V E+ ++ + + K +F +GEE + ET G KVK+V
Sbjct: 27 LPEELIQKGKDIKGVSEIVQNG-KHFKFTITAGSKVIQNEFTVGEECELETMTGEKVKTV 85
Query: 61 ITIDGDTMTHIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+ ++GD K K + + D + T+T+ DIV RI K
Sbjct: 86 VQLEGDNKLVTTF--KNIKSVTELNGDIITNTMTLGDIVFKRISK 128
>2rcq_A CRBP-II, retinol-binding protein II, cellular; cellular retinol
binding protein II, lipid-binding protein, X-RAY,
cytoplasm, transport, vitamin A; HET: TLA; 1.20A {Homo
sapiens} PDB: 2rct_A* 1b4m_A 1eii_A* 1opa_A 1opb_A*
1kqw_A* 1kqx_A
Length = 141
Score = 94.7 bits (235), Expect = 1e-26
Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETP--DGRKVK 58
+ TRK+ ++ +++D + + STF+N+ + F +G EFDE T D R VK
Sbjct: 29 IDFATRKIAVRLTQTKVIDQDG-DNFKTKTTSTFRNYDVDFTVGVEFDEYTKSLDNRHVK 87
Query: 59 SVITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+++T +GD + +QKG+ + + D++ + LT D VC +++K
Sbjct: 88 ALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLELTCGDQVCRQVFK 135
>2f73_A L-FABP, fatty acid-binding protein, liver; structural genomics,
structural genomics consortium, SGC, lipid binding
protein; 2.50A {Homo sapiens} SCOP: b.60.1.2
Length = 149
Score = 94.3 bits (234), Expect = 2e-26
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
+ + G + V E+ ++ + + K +F +GEE + ET G KVK+V
Sbjct: 46 LPEELIQKGKDIKGVSEIVQNG-KHFKFTITAGSKVIQNEFTVGEECELETMTGEKVKTV 104
Query: 61 ITIDGDTMTHIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+ ++GD K K + + D + T+T+ DIV RI K
Sbjct: 105 VQLEGDNKLVTTF--KNIKSVTELNGDIITNTMTLGDIVFKRISK 147
>3elx_A Ileal bIle acid-binding protein; ileal bIle acid-bindign protein,
zebrafish, cholic acid, LIP binding, transport, lipid
binding protein; 1.60A {Danio rerio} PDB: 3elz_A*
3em0_A*
Length = 138
Score = 93.7 bits (233), Expect = 3e-26
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 3/105 (2%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
+ G V E+ ++ KF +G+E D ET G+K K +
Sbjct: 27 IPDDVIAKGRDFKLVTEIVQNGDDFTWTQYYPNNHVVTNKFIVGKESDMETVGGKKFKGI 86
Query: 61 ITIDGDTMTHIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
++++G +T ++T S ++ T T T +
Sbjct: 87 VSMEGGKLTISFPKYQQT---TEISGGKLVETSTASGAQGTAVLV 128
>1ggl_A Protein (cellular retinol-binding protein III); carrier, transport
protein; 2.31A {Homo sapiens} SCOP: b.60.1.2
Length = 134
Score = 93.9 bits (233), Expect = 3e-26
Identities = 29/108 (26%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEE--TPDGRKVK 58
+ L RK+ + P E+E T+ + STF+N+ ++F +G EF+E+ + DGRK +
Sbjct: 25 ISLAVRKIALLLKPDKEIEHQG-NHMTVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRKCQ 83
Query: 59 SVITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+++T + + + +QKG+ + + + LT D VC ++++
Sbjct: 84 TIVTWEEEHLVCVQKGEVPNRGWRHWLEGEMLYLELTARDAVCEQVFR 131
>1crb_A Cellular retinol binding protein; cellular lipophilic transport
protein; HET: RTL; 2.10A {Rattus rattus} SCOP: b.60.1.2
PDB: 1mx7_A 1mx8_A* 1jbh_A 1kgl_A*
Length = 134
Score = 93.1 bits (231), Expect = 5e-26
Identities = 28/108 (25%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEE--TPDGRKVK 58
V + RK+ + P E+ +D + + STF+N+ + F++G+EF+E+ D RK
Sbjct: 25 VNVALRKIANLLKPDKEIVQDG-DHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCM 83
Query: 59 SVITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+ ++ DGD + +QKG+ + + DE+ + + + + C +++K
Sbjct: 84 TTVSWDGDKLQCVQKGEKEGRGWTQWIEGDELHLEMRAEGVTCKQVFK 131
>1vyf_A SM14, 14 kDa fatty acid binding protein; transport protein; HET:
OLA; 1.85A {Schistosoma mansoni} SCOP: b.60.1.2 PDB:
1vyg_A* 2poa_A
Length = 135
Score = 91.6 bits (227), Expect = 2e-25
Identities = 43/107 (40%), Positives = 61/107 (57%), Gaps = 3/107 (2%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
V TR++G +V+P + D T+ + STFKN + FK GEEFDE+T DGR VKSV
Sbjct: 27 VSWATRQIGNTVTPTVTFTMDG-DKMTMLTESTFKNLSCTFKFGEEFDEKTSDGRNVKSV 85
Query: 61 ITIDGDT-MTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+ + ++ +T Q T I+R D +K T+TV D+ R YK
Sbjct: 86 VEKNSESKLTQTQVDPKNTTVIVREVDGDTMKTTVTVGDVTAIRNYK 132
>2g7b_A Cellular retinoic acid-binding protein 2; crabpii, retinoids, beta
barrel, crystallography, X-RAY, high resolution, schiff
base; HET: AZE; 1.18A {Homo sapiens} PDB: 3d97_A* 3fa8_A
3i17_B 3fa7_A* 3fa9_A 3d95_A 3cwk_A 3f8a_A* 3fep_A*
3fek_B 3fa6_A 1bm5_A 1xca_A 3fel_A* 3f9d_A* 3cr6_A*
3fen_A 1blr_A 1cbq_A* 1cbs_A* ...
Length = 137
Score = 82.4 bits (203), Expect = 8e-22
Identities = 37/113 (32%), Positives = 68/113 (60%), Gaps = 9/113 (7%)
Query: 1 VGLITRKVG--ASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
V ++ RK+ A+ P +E++++ T+ + +++T + I FK+GEEF+E+T DGR K
Sbjct: 24 VNVMLRKIAVAAASKPAVEIKQEG-DTFYIKTSTTVRTTEINFKVGEEFEEQTVDGRPCK 82
Query: 59 SVITIDGDT-MTHIQK-----GDKETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
S++ + + M QK G K + + + +D E+ T+T DD+VCT++Y
Sbjct: 83 SLVKWESENKMVCEQKLLKGEGPKTSWTLELTNDGELIETMTADDVVCTKVYV 135
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.050
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 22/90 (24%)
Query: 9 GASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFD----EETPDGRKVKSVITID 64
G S+ L++ ++ T+H F K +I E + E DG+ I +
Sbjct: 1658 GFSI---LDIVINNPVNLTIH----FGGEKGK-RIRENYSAMIFETIVDGKLKTEKIFKE 1709
Query: 65 GDTMTHIQKGDKETKIIRVFSDDEVKMTLT 94
+ + T F ++ ++ T
Sbjct: 1710 IN--------EHSTSYT--FRSEKGLLSAT 1729
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.070
Identities = 21/122 (17%), Positives = 38/122 (31%), Gaps = 39/122 (31%)
Query: 18 LEKD-DSGTYTLHS-----NSTFKN----HAI---KFKIGEEFDEETPDGRKVKSVITID 64
+EK T ++ S +N H + I + FD + +D
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL------IPPYLD 470
Query: 65 GDTMTHI-------QKGDKETKIIRVFSDD---EVKMTLT----------VDDIVCTRIY 104
+HI + ++ T VF D E K+ ++ + + Y
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 105 KP 106
KP
Sbjct: 531 KP 532
>1j7g_A D-tyrosyl-tRNA(Tyr) deacylase; D-Tyr-tRNA(Tyr) deacylase,
structural genomics, hypothetical structure 2 function
project, S2F; 1.64A {Haemophilus influenzae rd KW20}
SCOP: c.110.1.1
Length = 144
Score = 29.7 bits (68), Expect = 0.096
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 20/59 (33%)
Query: 59 SVITIDGDTMTHIQKG----------DKET-------KII--RVFSDDEVKMTLTVDDI 98
V + G+T+ I KG D K++ R+FSD+ KM L V
Sbjct: 12 KV-DVKGETIGKIGKGLLVLLGVEKEDNREKADKLAEKVLNYRIFSDENDKMNLNVQQA 69
>1jke_A O145, D-Tyr-trnaTyr deacylase, ORF_O145; beta-alpha-barrel,
hydrolase; 1.55A {Escherichia coli} SCOP: c.110.1.1
Length = 145
Score = 29.7 bits (68), Expect = 0.11
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 20/59 (33%)
Query: 59 SVITIDGDTMTHIQKG----------DKET-------KII--RVFSDDEVKMTLTVDDI 98
SV T++G+ I G D E +++ R+FSD E KM L V
Sbjct: 12 SV-TVEGEVTGEIGAGLLVLLGVEKDDDEQKANRLCERVLGYRIFSDAEGKMNLNVQQA 69
>2dbo_A D-tyrosyl-tRNA(Tyr) deacylase; D-amino acid, D-tyrosine,
structural genomi NPPSFA, national project on protein
structural and function analyses; 2.76A {Aquifex
aeolicus}
Length = 148
Score = 29.3 bits (67), Expect = 0.13
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 20/59 (33%)
Query: 59 SVITIDGDTMTHIQKG----------DKET-------KII--RVFSDDEVKMTLTVDDI 98
V +DG + I +G D E KI+ R+F D+ K +V DI
Sbjct: 12 WV-EVDGKVVGSINEGLNVFLGVRKGDTEEDIEKLVNKILNLRIFEDERGKFQYSVLDI 69
>3ko5_A D-tyrosyl-tRNA(Tyr) deacylase; DTD, ADP, hydrolase; HET: ADP;
2.09A {Plasmodium falciparum} PDB: 3knp_A 3knf_A*
3ko3_A* 3ko4_A* 3ko7_A* 3ko9_A* 3kob_A* 3koc_A* 3kod_A
3lmt_A 3lmu_A 3lmv_A*
Length = 164
Score = 27.1 bits (61), Expect = 0.97
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 9/37 (24%)
Query: 71 IQKGDKET-------KII--RVFSDDEVKMTLTVDDI 98
I K D K + R++++D V D+
Sbjct: 43 IHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDL 79
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP,
ionizable group, hydrolase; HET: THP; 1.35A
{Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A*
3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A*
3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A*
3mz5_A* 3mhb_A* 3dhq_A* ...
Length = 143
Score = 25.8 bits (57), Expect = 2.9
Identities = 5/25 (20%), Positives = 9/25 (36%), Gaps = 3/25 (12%)
Query: 56 KVKSVITIDGDTMTHIQKGDKETKI 80
+ I DGDT+ + +
Sbjct: 13 TLIKAI--DGDTVK-LMYKGQPMTF 34
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM
barrel, IMPDH, IMP dehydrogenase, LOO purine
biosynthesis, oxidoreductase; 2.40A {Borrelia
burgdorferi} SCOP: c.1.5.1
Length = 404
Score = 25.2 bits (56), Expect = 4.4
Identities = 4/48 (8%), Positives = 14/48 (29%)
Query: 51 TPDGRKVKSVITIDGDTMTHIQKGDKETKIIRVFSDDEVKMTLTVDDI 98
++++ V T + E K + ++ + +
Sbjct: 78 EAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNA 125
>2asw_A Hypothetical protein AF1503; homodimer, parallel coiled-coil,
complementary X-DA packing, unknown function; NMR
{Archaeoglobus fulgidus} SCOP: a.274.1.1 PDB: 2asx_A
Length = 56
Score = 23.4 bits (51), Expect = 7.0
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 66 DTMTHIQKGDKETKIIRVFSDDEV 89
+T I +G+ E ++ DE+
Sbjct: 14 NTADKIAEGNLEAEVPHQNRADEI 37
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport,
respiratory chain, cell flavoprotein, FMN, iron,
iron-sulfur, membrane; HET: FMN; 3.10A {Thermus
thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2*
3m9s_2*
Length = 181
Score = 24.1 bits (53), Expect = 9.6
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 37 HAIKFKIGEEFDEETPDGR 55
+ +G E TPDG
Sbjct: 98 DYLTETLGIGPGEVTPDGL 116
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.135 0.373
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,636,428
Number of extensions: 89252
Number of successful extensions: 361
Number of sequences better than 10.0: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 45
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.4 bits)