RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15136
(107 letters)
>d1ftpa_ b.60.1.2 (A:) Fatty acid-binding protein {Desert locust
(Schistocerca gregaria) [TaxId: 7010]}
Length = 133
Score = 106 bits (265), Expect = 1e-31
Identities = 57/106 (53%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VG I RK G ++SPV+ELE D + L S + KN FK+GEEFDEET DGRKVKS
Sbjct: 26 VGAIERKAGLALSPVIELEILDGDKFKLTSKTAIKNTEFTFKLGEEFDEETLDGRKVKST 85
Query: 61 ITIDGDT-MTHIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
IT DG + H QKGD T IIR FS ++ +T+ + D+V TRIYK
Sbjct: 86 ITQDGPNKLVHEQKGDHPTIIIREFSKEQCVITIKLGDLVATRIYK 131
>d1o8va_ b.60.1.2 (A:) Fatty acid-binding protein homolog 1 {Flat
worm (Echinococcus granulosus) [TaxId: 6210]}
Length = 133
Score = 105 bits (263), Expect = 3e-31
Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
V +TRK+G V P L + G Y + S STFK FK+GE+F E TPD R+V S+
Sbjct: 25 VDFVTRKMGNLVKPNLIVTDLGGGKYKMRSESTFKTTECSFKLGEKFKEVTPDSREVASL 84
Query: 61 ITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
IT++ M H Q K T I RV +E+K T+ VD++VC R Y
Sbjct: 85 ITVENGVMKHEQDDKTKVTYIERVVEGNELKATVKVDEVVCVRTYS 130
>d1fdqa_ b.60.1.2 (A:) Brain fatty acid binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 131
Score = 102 bits (257), Expect = 2e-30
Identities = 47/106 (44%), Positives = 65/106 (61%), Gaps = 2/106 (1%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VG TR+VG P + + ++ + + STFKN I F++GEEFDE T D R KSV
Sbjct: 25 VGFATRQVGNVTKPTVIISQEG-DKVVIRTLSTFKNTEISFQLGEEFDETTADDRNCKSV 83
Query: 61 ITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+++DGD + HIQK D KET +R D ++ MTLT D+V R Y+
Sbjct: 84 VSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTFGDVVAVRHYE 129
>d1lpja_ b.60.1.2 (A:) Cellular retinol-binding protein IV {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 102 bits (257), Expect = 2e-30
Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 4/108 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETP--DGRKVK 58
+ TRK+ + P +E++ ++T+H+NS+ +N+ +KFK+GEEFDE+ D RK K
Sbjct: 25 IDFATRKIAKLLKPQKVIEQNG-DSFTIHTNSSLRNYFVKFKVGEEFDEDNRGLDNRKCK 83
Query: 59 SVITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
S++ D D +T IQKG+ K D++ + + + VC + ++
Sbjct: 84 SLVIWDNDRLTCIQKGEKKNRGWTHWIEGDKLHLEMFCEGQVCKQTFQ 131
>d2hnxa1 b.60.1.2 (A:1-131) Adipocyte lipid-binding protein, ALBP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 131
Score = 102 bits (255), Expect = 4e-30
Identities = 45/106 (42%), Positives = 61/106 (57%), Gaps = 2/106 (1%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VG TRKV P + + + T+ S STFKN I F +G+EFDE T D RKVKS
Sbjct: 25 VGFATRKVAGMAKPNMIISVNG-DVITIKSESTFKNTEISFILGQEFDEVTADDRKVKST 83
Query: 61 ITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
IT+DG + H+QK D K T I R DD++ + + + TR+Y+
Sbjct: 84 ITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVMKGVTSTRVYE 129
>d1mdca_ b.60.1.2 (A:) Fatty acid-binding protein {Tobacco hornworm
(Manduca sexta) [TaxId: 7130]}
Length = 131
Score = 101 bits (254), Expect = 6e-30
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
+ + S P ++E + +Y+ S + FK G EFD+ G VKS+
Sbjct: 24 LSDDKIQALVSDKPTQKMEANG-DSYSNTSTGGGGAKTVSFKSGVEFDDVIGAGDSVKSM 82
Query: 61 ITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVD--DIVCTRIYK 105
T+DG+ +TH+ KGD + ++ D++ +T+T D V R YK
Sbjct: 83 YTVDGNVVTHVVKGDAGVATFKKEYNGDDLVVTITSSNWDGVARRYYK 130
>d1hmsa_ b.60.1.2 (A:) Muscle fatty acid binding protein (m-fabp)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 131
Score = 100 bits (250), Expect = 2e-29
Identities = 49/106 (46%), Positives = 68/106 (64%), Gaps = 2/106 (1%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VG TR+V + P +EK+ TL ++STFKN I FK+G EFDE T D RKVKS+
Sbjct: 25 VGFATRQVASMTKPTTIIEKNG-DILTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSI 83
Query: 61 ITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+T+DG + H+QK D +ET ++R D ++ +TLT VCTR Y+
Sbjct: 84 VTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTHGTAVCTRTYE 129
>d2a0aa1 b.60.1.2 (A:1-131) Der f 13 allergen {House dust mite
(Dermatophagoides farinae) [TaxId: 6954]}
Length = 131
Score = 99 bits (249), Expect = 3e-29
Identities = 45/106 (42%), Positives = 63/106 (59%), Gaps = 2/106 (1%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VG + + ++ P E+ ++ Y S STFKN KFK+GEEF+E+ DG++VK+V
Sbjct: 25 VGFMVKTAAKTLKPTFEVAIEN-DQYIFRSLSTFKNTEAKFKLGEEFEEDRADGKRVKTV 83
Query: 61 ITIDGDT-MTHIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
I +GD Q GDKE KIIR F+ DEV +T + D + R YK
Sbjct: 84 IQKEGDNKFVQTQFGDKEVKIIREFNGDEVVVTASCDGVTSVRTYK 129
>d1yiva1 b.60.1.2 (A:1-131) P2 myelin protein {Horse (Equus
caballus) [TaxId: 9796]}
Length = 131
Score = 99.5 bits (248), Expect = 4e-29
Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VGL TRK+G P + + K T+ + S FKN I FK+G+EFDE T D RK KS
Sbjct: 25 VGLATRKLGNLAKPTVIISKKG-DVITIRTESGFKNTEISFKLGQEFDETTADNRKAKST 83
Query: 61 ITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+T+ + +QK + ET I R D ++ + + +VCTRIY+
Sbjct: 84 VTLAAGALNQVQKWNGNETTIKRKLVDGKMVVECKMASVVCTRIYE 129
>d1ggla_ b.60.1.2 (A:) Cellular retinol-binding protein III {Human
(Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 97.6 bits (243), Expect = 2e-28
Identities = 29/108 (26%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEE--TPDGRKVK 58
+ L RK+ + P E+E T+ + STF+N+ ++F +G EF+E+ + DGRK +
Sbjct: 25 ISLAVRKIALLLKPDKEIEHQG-NHMTVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRKCQ 83
Query: 59 SVITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+++T + + + +QKG+ + + + LT D VC ++++
Sbjct: 84 TIVTWEEEHLVCVQKGEVPNRGWRHWLEGEMLYLELTARDAVCEQVFR 131
>d1kqwa_ b.60.1.2 (A:) Cellular retinol-binding protein II (CRBP)
{Zebrafish (Danio rerio) [TaxId: 7955]}
Length = 134
Score = 97.6 bits (243), Expect = 3e-28
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETP--DGRKVK 58
+ TRK+ + + ++ + + STF+N+ + F IGEEFDE+T D R VK
Sbjct: 25 IDFATRKIAVHLKQTKVIVQNG-DKFETKTLSTFRNYEVNFVIGEEFDEQTKGLDNRTVK 83
Query: 59 SVITIDGDTMTHIQKGDKETKII-RVFSDDEVKMTLTVDDIVCTRIYK 105
+++ DGD + +QKG+KE + + D + + + D VC +++K
Sbjct: 84 TLVKWDGDKLVCVQKGEKENRGWKQWIEGDLLHLEIHCQDKVCHQVFK 131
>d1ifca_ b.60.1.2 (A:) Intestinal fatty acid binding protein {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 131
Score = 96.9 bits (241), Expect = 4e-28
Identities = 27/108 (25%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
+ ++ RK+GA + L + ++ +T+ +S F+N + F++G +F DG ++
Sbjct: 23 INVVKRKLGAHDNLKLTITQEG-NKFTVKESSNFRNIDVVFELGVDFAYSLADGTELTGT 81
Query: 61 ITIDGDTMTHIQK---GDKETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
T++G+ + K KE +R S +E+ T T + + RI+K
Sbjct: 82 WTMEGNKLVGKFKRVDNGKELIAVREISGNELIQTYTYEGVEAKRIFK 129
>d1b56a_ b.60.1.2 (A:) Epidermal fatty acid binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 96.8 bits (241), Expect = 6e-28
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
VG+ RK+GA P + D T+ + ST K +GE+F+E T DGRK ++V
Sbjct: 26 VGIALRKMGAMAKPDCIITCDG-KNLTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTV 84
Query: 61 ITIDGDTMTHIQKGD-KETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+ Q+ D KE+ I R D ++ + ++++ CTRIY+
Sbjct: 85 CNFTDGALVQHQEWDGKESTITRKLKDGKLVVECVMNNVTCTRIYE 130
>d1crba_ b.60.1.2 (A:) Cellular retinol-binding protein II (CRBP)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 134
Score = 96.4 bits (240), Expect = 7e-28
Identities = 30/108 (27%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEE--TPDGRKVK 58
V + RK+ + P E+ +D + + STF+N+ + F++G+EF+E+ D RK
Sbjct: 25 VNVALRKIANLLKPDKEIVQDG-DHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCM 83
Query: 59 SVITIDGDTMTHIQKGDKE-TKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+ ++ DGD + +QKG+KE + DE+ + + + + C +++K
Sbjct: 84 TTVSWDGDKLQCVQKGEKEGRGWTQWIEGDELHLEMRAEGVTCKQVFK 131
>d1lfoa_ b.60.1.2 (A:) Liver fatty acid binding protein {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 127
Score = 95.7 bits (238), Expect = 1e-27
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
+ + G + V E+ + L K +F +GEE + ET G KVK+V
Sbjct: 24 LPEDLIQKGKDIKGVSEIVHEG-KKVKLTITYGSKVIHNEFTLGEECELETMTGEKVKAV 82
Query: 61 ITIDGDT-MTHIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+ ++GD M KG K F+ D + T+T+ DIV R+ K
Sbjct: 83 VKMEGDNKMVTTFKGIKSV---TEFNGDTITNTMTLGDIVYKRVSK 125
>d1p6pa_ b.60.1.2 (A:) Liver basic fatty acid binding protein,
LB_FABP {Argentine common toad (Bufo arenarum) [TaxId:
38577]}
Length = 125
Score = 95.2 bits (237), Expect = 2e-27
Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
+ KV V+PV+E+E++ + + S + + H+ F +G+E + + DG+K+K
Sbjct: 23 LPEDIIKVAKDVNPVIEIEQNG-NEFVVTSKTPKQTHSNSFTVGKESEITSMDGKKIKVT 81
Query: 61 ITIDGDTMTHIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+ ++G + + I+ + DE+ +T+ TR K
Sbjct: 82 VQLEGGKLICKS---DKFSHIQEVNGDEMVEKITIGSSTLTRKSK 123
>d1o1va_ b.60.1.2 (A:) Ileal lipid-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 127
Score = 92.6 bits (230), Expect = 2e-26
Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 3/105 (2%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
+ + + V E+++D S KF +G+E + +T G+ K+
Sbjct: 23 ISSDVIEKARNFKIVTEVQQDGQDFTWSQHYSGGHTMTNKFTVGKESNIQTMGGKTFKAT 82
Query: 61 ITIDGDTMTHIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+ ++G + D++ T+ + R+ K
Sbjct: 83 VQMEGGKLVVNFPN---YHQTSEIVGDKLVEVSTIGGVTYERVSK 124
>d1tw4a_ b.60.1.2 (A:) Liver basic fatty acid binding protein,
LB_FABP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 125
Score = 91.0 bits (226), Expect = 9e-26
Identities = 18/105 (17%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
+ K+ + P++E+++ + + S + + F +G+E D T DG+K+K
Sbjct: 23 LPEDLIKMARDIKPIVEIQQKG-DDFVVTSKTPRQTVTNSFTLGKEADITTMDGKKLKCT 81
Query: 61 ITIDGDTMTHIQKGDKETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+ + + + + +E+ T+T + R K
Sbjct: 82 VHLANGKLVTKSEKFSHE---QEVKGNEMVETITFGGVTLIRRSK 123
>d1vyfa_ b.60.1.2 (A:) Fatty acid-binding protein Sm14 {Blood fluke
(Schistosoma mansoni) [TaxId: 6183]}
Length = 135
Score = 88.8 bits (220), Expect = 8e-25
Identities = 44/107 (41%), Positives = 62/107 (57%), Gaps = 3/107 (2%)
Query: 1 VGLITRKVGASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVKSV 60
V TR++G +V+P + D T+ + STFKN + FK GEEFDE+T DGR VKSV
Sbjct: 27 VSWATRQIGNTVTPTVTFTMDG-DKMTMLTESTFKNLSCTFKFGEEFDEKTSDGRNVKSV 85
Query: 61 ITIDGDT-MTHIQKGDK-ETKIIRVFSDDEVKMTLTVDDIVCTRIYK 105
+ + ++ +T Q K T I+R D +K T+TV D+ R YK
Sbjct: 86 VEKNSESKLTQTQVDPKNTTVIVREVDGDTMKTTVTVGDVTAIRNYK 132
>d2fs6a1 b.60.1.2 (A:2-137) Cellular retinoic-acid-binding protein
(CRABP) {Human (Homo sapiens), CRABP-II [TaxId: 9606]}
Length = 136
Score = 85.7 bits (212), Expect = 2e-23
Identities = 38/113 (33%), Positives = 68/113 (60%), Gaps = 9/113 (7%)
Query: 1 VGLITRKVG--ASVSPVLELEKDDSGTYTLHSNSTFKNHAIKFKIGEEFDEETPDGRKVK 58
V ++ RK+ A+ P +E++++ T+ + +++T + I FK+GEEF+E+T DGR K
Sbjct: 23 VNVMLRKIAVAAASKPAVEIKQEG-DTFYIKTSTTVRTTEINFKVGEEFEEQTVDGRPCK 81
Query: 59 SVITIDGD-TMTHIQKG----DKETKIIRVFSDD-EVKMTLTVDDIVCTRIYK 105
S++ + + M QK +T R ++D E+ +T+T DD+VCTR+Y
Sbjct: 82 SLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGELILTMTADDVVCTRVYV 134
>d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas
campestris pv. campestris [TaxId: 340]}
Length = 252
Score = 26.0 bits (56), Expect = 0.87
Identities = 8/62 (12%), Positives = 17/62 (27%)
Query: 38 AIKFKIGEEFDEETPDGRKVKSVITIDGDTMTHIQKGDKETKIIRVFSDDEVKMTLTVDD 97
IK K+G ++ R ++ I D + I +++
Sbjct: 33 TIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIAWIEE 92
Query: 98 IV 99
Sbjct: 93 PT 94
>d2asxa1 a.274.1.1 (A:278-331) Hypothetical protein AF1503
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 54
Score = 22.0 bits (47), Expect = 9.8
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 66 DTMTHIQKGDKETKIIRVFSDDEV 89
+T I +G+ E ++ DE+
Sbjct: 12 NTADKIAEGNLEAEVPHQNRADEI 35
>d2a6za1 b.29.1.13 (A:7-227) Emp47p N-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 221
Score = 23.0 bits (49), Expect = 10.0
Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 15/78 (19%)
Query: 43 IGEEFDEETPDGRKVKSVITIDGDTMTHIQKGDKE---------------TKIIRVFSDD 87
+ D P G ++ + + + D+ T + +D
Sbjct: 107 LQLLVDNNGPLGPTLRGQLNDGQKPVDKTKIYDQSFASCLMGYQDSSVPSTIRVTYDLED 166
Query: 88 EVKMTLTVDDIVCTRIYK 105
+ + + VD+ VC + K
Sbjct: 167 DNLLKVQVDNKVCFQTRK 184
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.135 0.373
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 399,149
Number of extensions: 17071
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 31
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.0 bits)