BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15137
(774 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Muation Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQO|B Chain B, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Muation Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQV|A Chain A, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Mutation Bound To A Hydroxamic Acid
Inhibitor
pdb|2VQV|B Chain B, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Mutation Bound To A Hydroxamic Acid
Inhibitor
Length = 413
Score = 285 bits (729), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 131/219 (59%), Positives = 167/219 (76%), Gaps = 4/219 (1%)
Query: 533 WDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGAL 592
WDVHHGNGTQQ FYSD VLY+S+HR+DDGNFFPG+G P E GTG G+GFN+N+A++G L
Sbjct: 195 WDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGL 254
Query: 593 NPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQ 652
+PPMGDAEYLAAFRT+VMP+A EF P +VLVS+GFDA GHP PLGGY LS CFGY+T+
Sbjct: 255 DPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTK 314
Query: 653 QLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPPLSQEELTRSPCLKAVETLQ 712
QLM LA G++VLALEGGYDL ++CD++EACV ALLG+ PL ++ L + P AV +++
Sbjct: 315 QLMGLAGGRIVLALEGGYDLTAICDASEACVSALLGNELDPLPEKVLQQRPNANAVRSME 374
Query: 713 KTIAIQVSHWPVLKRSAHTITWSALSAA----EDNETVS 747
K + I +W L+R+ T S + A E+ ETV+
Sbjct: 375 KVMEIHSKYWRCLQRTTSTAGRSLIEAQTCENEEAETVT 413
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 31/34 (91%)
Query: 486 PEQCGTGAGLGFNINIAWSGALNPPMGDAEYLSS 519
P++ GTG G+GFN+N+A++G L+PPMGDAEYL++
Sbjct: 233 PDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAA 266
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With
Gain-Of-Function Mutation His332tyr)
Length = 413
Score = 285 bits (728), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 131/219 (59%), Positives = 167/219 (76%), Gaps = 4/219 (1%)
Query: 533 WDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGAL 592
WDVHHGNGTQQ FYSD VLY+S+HR+DDGNFFPG+G P E GTG G+GFN+N+A++G L
Sbjct: 195 WDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGL 254
Query: 593 NPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQ 652
+PPMGDAEYLAAFRT+VMP+A EF P +VLVS+GFDA GHP PLGGY LS CFGY+T+
Sbjct: 255 DPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTK 314
Query: 653 QLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPPLSQEELTRSPCLKAVETLQ 712
QLM LA G++VLALEGGYDL ++CD++EACV ALLG+ PL ++ L + P AV +++
Sbjct: 315 QLMGLAGGRIVLALEGGYDLTAICDASEACVSALLGNELDPLPEKVLQQRPNANAVRSME 374
Query: 713 KTIAIQVSHWPVLKRSAHTITWSALSAA----EDNETVS 747
K + I +W L+R+ T S + A E+ ETV+
Sbjct: 375 KVMEIHSKYWRCLQRTTSTAGRSLIEAQTCENEEAETVT 413
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 31/34 (91%)
Query: 486 PEQCGTGAGLGFNINIAWSGALNPPMGDAEYLSS 519
P++ GTG G+GFN+N+A++G L+PPMGDAEYL++
Sbjct: 233 PDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAA 266
>pdb|2VQQ|A Chain A, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To-
Alanine Mutant) Bound To A Trifluoromethylketone
Inhbitor
pdb|2VQQ|B Chain B, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To-
Alanine Mutant) Bound To A Trifluoromethylketone
Inhbitor
Length = 413
Score = 283 bits (724), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 130/219 (59%), Positives = 167/219 (76%), Gaps = 4/219 (1%)
Query: 533 WDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGAL 592
WDVHHGNGTQQ FYSD VLY+S+HR+DDGNFFPG+G P E GTG G+GFN+N+A++G L
Sbjct: 195 WDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGL 254
Query: 593 NPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQ 652
+PPMGDAEYLAAFRT+VMP+A EF P +VLVS+GFDA GHP PLGGY LS CFGY+T+
Sbjct: 255 DPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTK 314
Query: 653 QLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPPLSQEELTRSPCLKAVETLQ 712
QLM LA G++VLALEGG+DL ++CD++EACV ALLG+ PL ++ L + P AV +++
Sbjct: 315 QLMGLAGGRIVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVLQQRPNANAVRSME 374
Query: 713 KTIAIQVSHWPVLKRSAHTITWSALSAA----EDNETVS 747
K + I +W L+R+ T S + A E+ ETV+
Sbjct: 375 KVMEIHSKYWRCLQRTTSTAGRSLIEAQTCENEEAETVT 413
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 31/34 (91%)
Query: 486 PEQCGTGAGLGFNINIAWSGALNPPMGDAEYLSS 519
P++ GTG G+GFN+N+A++G L+PPMGDAEYL++
Sbjct: 233 PDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAA 266
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQM|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A Hydroxamic
Acid Inhbitor
Length = 413
Score = 283 bits (723), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 130/219 (59%), Positives = 167/219 (76%), Gaps = 4/219 (1%)
Query: 533 WDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGAL 592
WDVHHGNGTQQ FYSD VLY+S+HR+DDGNFFPG+G P E GTG G+GFN+N+A++G L
Sbjct: 195 WDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGL 254
Query: 593 NPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQ 652
+PPMGDAEYLAAFRT+VMP+A EF P +VLVS+GFDA GHP PLGGY LS CFGY+T+
Sbjct: 255 DPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTK 314
Query: 653 QLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPPLSQEELTRSPCLKAVETLQ 712
QLM LA G++VLALEGG+DL ++CD++EACV ALLG+ PL ++ L + P AV +++
Sbjct: 315 QLMGLAGGRIVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVLQQRPNANAVRSME 374
Query: 713 KTIAIQVSHWPVLKRSAHTITWSALSAA----EDNETVS 747
K + I +W L+R+ T S + A E+ ETV+
Sbjct: 375 KVMEIHSKYWRCLQRTTSTAGRSLIEAQTCENEEAETVT 413
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 31/34 (91%)
Query: 486 PEQCGTGAGLGFNINIAWSGALNPPMGDAEYLSS 519
P++ GTG G+GFN+N+A++G L+PPMGDAEYL++
Sbjct: 233 PDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAA 266
>pdb|3C0Y|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Y|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Y|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Z|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C0Z|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C0Z|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C10|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
pdb|3C10|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
pdb|3C10|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
Length = 423
Score = 281 bits (720), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 125/197 (63%), Positives = 153/197 (77%)
Query: 533 WDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGAL 592
WDVHHGNGTQQ FY D VLY+S+HRHDDGNFFPG+G E G G+G GFN+N+AW+G L
Sbjct: 226 WDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGL 285
Query: 593 NPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQ 652
+PPMGD EYLAAFR +VMP+A+EF P +VLVSAGFDAA GHP PLGGY +S CFGYMTQ
Sbjct: 286 DPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQ 345
Query: 653 QLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPPLSQEELTRSPCLKAVETLQ 712
QLM LA G VVLALEGG+DL ++CD++EACV ALLG+ PLS+E + P L A+ +L+
Sbjct: 346 QLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLE 405
Query: 713 KTIAIQVSHWPVLKRSA 729
I + +W ++R A
Sbjct: 406 AVIRVHSKYWGCMQRLA 422
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 28/33 (84%)
Query: 487 EQCGTGAGLGFNINIAWSGALNPPMGDAEYLSS 519
++ G G+G GFN+N+AW+G L+PPMGD EYL++
Sbjct: 265 DEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAA 297
>pdb|3HM5|A Chain A, Sant Domain Of Human Dna Methyltransferase 1 Associated
Protein 1
pdb|4IEJ|A Chain A, Crystal Structure Of A Dna Methyltransferase 1 Associated
Protein 1 (dmap1) From Homo Sapiens At 1.45 A Resolution
Length = 93
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/89 (59%), Positives = 65/89 (73%), Gaps = 1/89 (1%)
Query: 115 GKEYPFARFNKQVSIPTYTDTEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDT 174
GK+YPFARFNK V +P Y++ EY L WT+AETDHLFDL RFDLRF+VIHDRYD
Sbjct: 2 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDH 61
Query: 175 NKFPTSRTIEDLKQRYYFVCHTLAKMRGT 203
+F R++EDLK+RYY +C LA +R
Sbjct: 62 QQFK-KRSVEDLKERYYHICAKLANVRAV 89
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 371 PEKIFEPTSLLSNLGDTEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFP 430
P F T + + EY L WT+AETDHLFDL RFDLRF+VIHDRYD +F
Sbjct: 6 PFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFK 65
Query: 431 TSRTIEDLKQRYYFVCYTLAKMRGT 455
R++EDLK+RYY +C LA +R
Sbjct: 66 -KRSVEDLKERYYHICAKLANVRAV 89
>pdb|1ZZ0|A Chain A, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|B Chain B, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|C Chain C, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|D Chain D, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ1|A Chain A, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|B Chain B, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|C Chain C, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|D Chain D, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ3|A Chain A, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|B Chain B, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|C Chain C, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|D Chain D, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|2GH6|A Chain A, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|B Chain B, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|C Chain C, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|D Chain D, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
Length = 369
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 82/142 (57%), Gaps = 12/142 (8%)
Query: 533 WDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGAL 592
WDVHHGNGTQ I+++D VL +S+H+H F P +G E G G G G+NIN+ L
Sbjct: 179 WDVHHGNGTQDIWWNDPSVLTISLHQHL--CFPPDSGYSTERGAGNGHGYNINV----PL 232
Query: 593 NPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQ 652
P G+A YL A +V+P + + PQ+++V +GFDA+ PL ++ F M +
Sbjct: 233 PPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASM--LDPLARMMVTADGFRQMAR 290
Query: 653 QLMTLA----DGKVVLALEGGY 670
+ + A DG++V EGGY
Sbjct: 291 RTIDCAADICDGRIVFVQEGGY 312
>pdb|2VCG|A Chain A, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|B Chain B, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|C Chain C, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|D Chain D, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
Length = 375
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 82/142 (57%), Gaps = 12/142 (8%)
Query: 533 WDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGAL 592
WDVHHGNGTQ I+++D VL +S+H+H F P +G E G G G G+NIN+ L
Sbjct: 185 WDVHHGNGTQDIWWNDPSVLTISLHQHL--CFPPDSGYSTERGAGNGHGYNINV----PL 238
Query: 593 NPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQ 652
P G+A YL A +V+P + + PQ+++V +GFDA+ PL ++ F M +
Sbjct: 239 PPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASM--LDPLARMMVTADGFRQMAR 296
Query: 653 QLMTLA----DGKVVLALEGGY 670
+ + A DG++V EGGY
Sbjct: 297 RTIDCAADICDGRIVFVQEGGY 318
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|B Chain B, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|C Chain C, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|D Chain D, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
Length = 362
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 77/159 (48%), Gaps = 20/159 (12%)
Query: 534 DVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGG-PIECGTGAGLGFNINIAWSGAL 592
D+HHG G Q+IFY+ + VLY+SIH D NF+P G E G G GLG+N+N+
Sbjct: 213 DMHHGQGIQEIFYARRDVLYVSIHG-DPTNFYPAVAGFDDERGAGEGLGYNVNL------ 265
Query: 593 NPPMGDAEYLAAFRTIVMPVAKE---FDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGY 649
PM AAF V +E F P +++S GFD P ++ FG
Sbjct: 266 --PMPHGSSEAAFFERVDDALRELRRFAPDALVLSLGFDVY--RDDPQSQVAVTTDGFGR 321
Query: 650 MTQQLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLG 688
+ + L V++ EGGY + S+ EA R+ G
Sbjct: 322 LGHLIGALRLPTVIVQ-EGGYHIESL----EANARSFFG 355
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant
pdb|3EZT|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101e Variant
Length = 388
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 18/172 (10%)
Query: 522 REKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLG 581
R K + + D+HHG+G + F +V+ +S+H+ G FFPGTG + G G G
Sbjct: 166 RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGDVSDVGLGKGRY 224
Query: 582 FNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYK 641
+++N+ + D +Y +++ V + F+P+ V++ G D AG P+ +
Sbjct: 225 YSVNVPIQDGIQ----DEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD--PMCSFN 278
Query: 642 LSPA----CFGYMTQ-QLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLG 688
++P C Y+ Q QL TL G GGY+L + +LG
Sbjct: 279 MTPVGIGKCLKYILQWQLATLILGG------GGYNLANTARCWTYLTGVILG 324
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An
Amino Acid Derived Inhibitor
pdb|3SFH|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An
Amino Acid Derived Inhibitor
Length = 378
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 18/172 (10%)
Query: 522 REKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLG 581
R K + + D+HHG+G + F +V+ +S+H+ G FFPGTG + G G G
Sbjct: 167 RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGDVSDVGLGKGRY 225
Query: 582 FNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYK 641
+++N+ + D +Y +++ V + F+P+ V++ G D AG P+ +
Sbjct: 226 YSVNVPIQDGIQ----DEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD--PMCSFN 279
Query: 642 LSPA----CFGYMTQ-QLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLG 688
++P C Y+ Q QL TL G GGY+L + +LG
Sbjct: 280 MTPVGIGKCLKYILQWQLATLILGG------GGYNLANTARCWTYLTGVILG 325
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With
Trichostatin A
pdb|1T64|B Chain B, Crystal Structure Of Human Hdac8 Complexed With
Trichostatin A
pdb|1T67|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Ms-344
pdb|1T69|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Saha
pdb|1VKG|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Cra-19156
pdb|1VKG|B Chain B, Crystal Structure Of Human Hdac8 Complexed With Cra-19156
pdb|1W22|A Chain A, Crystal Structure Of Inhibited Human Hdac8
pdb|1W22|B Chain B, Crystal Structure Of Inhibited Human Hdac8
Length = 377
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 18/172 (10%)
Query: 522 REKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLG 581
R K + + D+HHG+G + F +V+ +S+H+ G FFPGTG + G G G
Sbjct: 166 RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGDVSDVGLGKGRY 224
Query: 582 FNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYK 641
+++N+ + D +Y +++ V + F+P+ V++ G D AG P+ +
Sbjct: 225 YSVNVPIQDGIQ----DEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD--PMCSFN 278
Query: 642 LSPA----CFGYMTQ-QLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLG 688
++P C Y+ Q QL TL G GGY+L + +LG
Sbjct: 279 MTPVGIGKCLKYILQWQLATLILGG------GGYNLANTARCWTYLTGVILG 324
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F07|B Chain B, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F07|C Chain C, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F0R|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
pdb|3F0R|B Chain B, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
pdb|3F0R|C Chain C, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
Length = 388
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 18/172 (10%)
Query: 522 REKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLG 581
R K + + D+HHG+G + F +V+ +S+H+ G FFPGTG + G G G
Sbjct: 166 RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGDVSDVGLGKGRY 224
Query: 582 FNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYK 641
+++N+ + D +Y +++ V + F+P+ V++ G D AG P+ +
Sbjct: 225 YSVNVPIQDGIQ----DEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD--PMCSFN 278
Query: 642 LSPA----CFGYMTQ-QLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLG 688
++P C Y+ Q QL TL G GGY+L + +LG
Sbjct: 279 MTPVGIGKCLKYILQWQLATLILGG------GGYNLANTARCWTYLTGVILG 324
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex
pdb|2V5X|B Chain B, Crystal Structure Of Hdac8-Inhibitor Complex
Length = 388
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 18/172 (10%)
Query: 522 REKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLG 581
R K + + D+HHG+G + F +V+ +S+H+ G FFPGTG + G G G
Sbjct: 166 RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGDVSDVGLGKGRY 224
Query: 582 FNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYK 641
+++N+ + D +Y +++ V + F+P+ V++ G D AG P+ +
Sbjct: 225 YSVNVPIQDGIQ----DEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD--PMCSFN 278
Query: 642 LSPA----CFGYMTQ-QLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLG 688
++P C Y+ Q QL TL G GGY+L + +LG
Sbjct: 279 MTPVGIGKCLKYILQWQLATLILGG------GGYNLANTARCWTYLTGVILG 324
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|B Chain B, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|C Chain C, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|D Chain D, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate
Length = 388
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 18/156 (11%)
Query: 522 REKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLG 581
R K + + D+HHG+G + F +V+ +S+H+ G FFPGTG + G G G
Sbjct: 166 RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGDVSDVGLGKGRY 224
Query: 582 FNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYK 641
+++N+ + D +Y +++ V + F+P+ V++ G D AG P+ +
Sbjct: 225 YSVNVPIQDGIQ----DEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD--PMCSFN 278
Query: 642 LSPA----CFGYMTQ-QLMTLADGKVVLALEGGYDL 672
++P C Y+ Q QL TL G GGY+L
Sbjct: 279 MTPVGIGKCLKYILQWQLATLILGG------GGYNL 308
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant
Length = 388
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 18/156 (11%)
Query: 522 REKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLG 581
R K + + D+HHG+G + F +V+ +S+H+ G FFPGTG + G G G
Sbjct: 166 RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGDVSDVGLGKGRY 224
Query: 582 FNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYK 641
+++N+ + D +Y +++ V + F+P+ V++ G D AG P+ +
Sbjct: 225 YSVNVPIQDGIQ----DEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD--PMCSFN 278
Query: 642 LSPA----CFGYMTQ-QLMTLADGKVVLALEGGYDL 672
++P C Y+ Q QL TL G GGY+L
Sbjct: 279 MTPVGIGKCLKYILQWQLATLILGG------GGYNL 308
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant.
pdb|3F06|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101a Variant
Length = 388
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 18/156 (11%)
Query: 522 REKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLG 581
R K + + D+HHG+G + F +V+ +S+H+ G FFPGTG + G G G
Sbjct: 166 RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGDVSDVGLGKGRY 224
Query: 582 FNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYK 641
+++N+ + D +Y +++ V + F+P+ V++ G D AG P+ +
Sbjct: 225 YSVNVPIQDGIQ----DEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD--PMCSFN 278
Query: 642 LSPA----CFGYMTQ-QLMTLADGKVVLALEGGYDL 672
++P C Y+ Q QL TL G GGY+L
Sbjct: 279 MTPVGIGKCLKYILQWQLATLILGG------GGYNL 308
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant
pdb|3EZP|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101n Variant
Length = 388
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 18/172 (10%)
Query: 522 REKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLG 581
R K + + D+HHG+G + F +V+ +S+H+ G FFPGTG + G G G
Sbjct: 166 RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGDVSDVGLGKGRY 224
Query: 582 FNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYK 641
+++N+ + D +Y +++ V + F+P+ V++ G D AG P+ +
Sbjct: 225 YSVNVPIQDGIQ----DEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD--PMCSFN 278
Query: 642 LSPA----CFGYMTQ-QLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLG 688
++P C Y+ Q QL TL G GGY+L + +LG
Sbjct: 279 MTPVGIGKCLKYILQWQLATLILGG------GGYNLANTARCWTYLTGVILG 324
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344
pdb|3MZ3|B Chain B, Crystal Structure Of Co2+ Hdac8 Complexed With M344
pdb|3RQD|A Chain A, Ideal Thiolate-Zinc Coordination Geometry In Depsipeptide
Binding To Histone Deacetylase 8
pdb|3RQD|B Chain B, Ideal Thiolate-Zinc Coordination Geometry In Depsipeptide
Binding To Histone Deacetylase 8
Length = 389
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 18/172 (10%)
Query: 522 REKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLG 581
R K + + D+HHG+G + F +V+ +S+H+ G FFPGTG + G G G
Sbjct: 166 RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGDVSDVGLGKGRY 224
Query: 582 FNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYK 641
+++N+ + D +Y +++ V + F+P+ V++ G D AG P+ +
Sbjct: 225 YSVNVPIQDGIQ----DEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD--PMCSFN 278
Query: 642 LSPA----CFGYMTQ-QLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLG 688
++P C Y+ Q QL TL G GGY+L + +LG
Sbjct: 279 MTPVGIGKCLKYILQWQLATLILGG------GGYNLANTARCWTYLTGVILG 324
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344
pdb|3MZ4|B Chain B, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344
pdb|3MZ6|A Chain A, Crystal Structure Of D101l Fe2+ Hdac8 Complexed With M344
pdb|3MZ7|A Chain A, Crystal Structure Of D101l Co2+ Hdac8 Complexed With M344
Length = 389
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 18/172 (10%)
Query: 522 REKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLG 581
R K + + D+HHG+G + F +V+ +S+H+ G FFPGTG + G G G
Sbjct: 166 RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGDVSDVGLGKGRY 224
Query: 582 FNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYK 641
+++N+ + D +Y +++ V + F+P+ V++ G D AG P+ +
Sbjct: 225 YSVNVPIQDGIQ----DEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD--PMCSFN 278
Query: 642 LSPA----CFGYMTQ-QLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLG 688
++P C Y+ Q QL TL G GGY+L + +LG
Sbjct: 279 MTPVGIGKCLKYILQWQLATLILGG------GGYNLANTARCWTYLTGVILG 324
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex
pdb|2V5W|B Chain B, Crystal Structure Of Hdac8-Substrate Complex
Length = 388
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 18/172 (10%)
Query: 522 REKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLG 581
R K + + D+HHG+G + F +V+ +S+H+ G FFPGTG + G G G
Sbjct: 166 RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGDVSDVGLGKGRY 224
Query: 582 FNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYK 641
+++N+ + D +Y +++ V + F+P+ V++ G D AG P+ +
Sbjct: 225 YSVNVPIQDGIQ----DEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD--PMCSFN 278
Query: 642 LSPA----CFGYMTQ-QLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLG 688
++P C Y+ Q QL TL G GG++L + +LG
Sbjct: 279 MTPVGIGKCLKYILQWQLATLILGG------GGFNLANTARCWTYLTGVILG 324
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
pdb|3MAX|B Chain B, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
pdb|3MAX|C Chain C, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
Length = 367
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 534 DVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGALN 593
D+HHG+G ++ FY+ RV+ +S H++ G +FPGTG + G G G + +N ++
Sbjct: 170 DIHHGDGVEEAFYTTDRVMTVSFHKY--GEYFPGTGDLRDIGAGKGKYYAVNFPMRDGID 227
Query: 594 PPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAG 632
D Y F+ I+ V + + P V++ G D+ +G
Sbjct: 228 ----DESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSG 262
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus
Length = 375
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 507 LNPPMGDAEYLSSDGREKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFP 566
+N P EYL G ++ Y D HH +G Q+ FY +V LS+H+ + F
Sbjct: 144 INNPAVGIEYLRKKGFKRILYIDL---DAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPF 200
Query: 567 GTGGPIECGTGAGLGFNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAG 626
G E G G G G+N+NI LN D E+L A + V + F+P++ L+ G
Sbjct: 201 EKGFLEEIGEGKGKGYNLNIPLPKGLN----DNEFLFALEKSLEIVKEVFEPEVYLLQLG 256
Query: 627 FD 628
D
Sbjct: 257 TD 258
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With
Trichostatin A
pdb|1C3R|B Chain B, Crystal Structure Of An Hdac Homolog Complexed With
Trichostatin A
pdb|1C3S|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Saha
Length = 375
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 507 LNPPMGDAEYLSSDGREKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFP 566
+N P EYL G ++ Y D HH +G Q+ FY +V LS+H+ + F
Sbjct: 144 INNPAVGIEYLRKKGFKRILYIDL---DAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPF 200
Query: 567 GTGGPIECGTGAGLGFNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAG 626
G E G G G G+N+NI LN D E+L A + V + F+P++ L+ G
Sbjct: 201 EKGFLEEIGEGKGKGYNLNIPLPKGLN----DNEFLFALEKSLEIVKEVFEPEVYLLQLG 256
Query: 627 FD 628
D
Sbjct: 257 TD 258
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
pdb|4A69|B Chain B, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
Length = 376
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 10/140 (7%)
Query: 534 DVHHGNGTQQIFYSDKRVLYLSIHRHDDGN-FFPGTGGPIECGTGAGLGFNINIAWSGAL 592
D+HHG+G Q+ FY RV+ +S H++ GN FFPGTG E G +G + +N+ L
Sbjct: 170 DIHHGDGVQEAFYLTDRVMTVSFHKY--GNYFFPGTGDMYEVGAESGRYYCLNV----PL 223
Query: 593 NPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQ 652
+ D Y F+ ++ V + P +++ G D+ LG + LS G +
Sbjct: 224 RDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLG--CDRLGCFNLSIRGHGECVE 281
Query: 653 QLMTLADGKVVLALEGGYDL 672
+ + +VL GGY +
Sbjct: 282 YVKSFNIPLLVLG-GGGYTV 300
>pdb|3Q9B|A Chain A, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|B Chain B, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|C Chain C, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|D Chain D, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|E Chain E, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|F Chain F, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|G Chain G, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|H Chain H, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|I Chain I, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|J Chain J, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|K Chain K, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|L Chain L, Crystal Structure Of Apah Complexed With M344
pdb|3Q9F|A Chain A, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|B Chain B, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|C Chain C, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|D Chain D, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|E Chain E, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|F Chain F, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|G Chain G, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|H Chain H, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|I Chain I, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|J Chain J, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|K Chain K, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|L Chain L, Crystal Structure Of Apah Complexed With Caps
Length = 341
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 70/161 (43%), Gaps = 20/161 (12%)
Query: 534 DVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPG-TGGPIECGTGAGLGFNINIAWSGAL 592
D HHGNGTQ IFY V + S+H D FP G E G GAG G N
Sbjct: 195 DFHHGNGTQDIFYERGDVFFASLHG-DPAEAFPHFLGYAEETGKGAGAGTTANY------ 247
Query: 593 NPPMGDAEYLAAFRTIVMPVAKE---FDPQIVLVSAGFDAAAGHPPPLGGYKL-SPACFG 648
PMG + + + K F + ++VS G D P+ +KL SP
Sbjct: 248 --PMGRGTPYSVWGEALTDSLKRIAAFGAEAIVVSLGVDTF--EQDPISFFKLTSP---D 300
Query: 649 YMTQQLMTLADG-KVVLALEGGYDLPSMCDSAEACVRALLG 688
Y+T A G +++ +EGGY +P + + ++ + G
Sbjct: 301 YITMGRTIAASGVPLLVVMEGGYGVPEIGLNVANVLKGVAG 341
>pdb|3Q9C|A Chain A, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|B Chain B, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|C Chain C, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|D Chain D, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|E Chain E, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|F Chain F, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|G Chain G, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|H Chain H, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|I Chain I, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|J Chain J, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|K Chain K, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|L Chain L, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9E|A Chain A, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|B Chain B, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|C Chain C, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|D Chain D, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|E Chain E, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|F Chain F, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|G Chain G, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|H Chain H, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|I Chain I, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|J Chain J, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|K Chain K, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|L Chain L, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
Length = 341
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 70/161 (43%), Gaps = 20/161 (12%)
Query: 534 DVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPG-TGGPIECGTGAGLGFNINIAWSGAL 592
D HHGNGTQ IFY V + S+H D FP G E G GAG G N
Sbjct: 195 DFHHGNGTQDIFYERGDVFFASLHG-DPAEAFPHFLGYAEETGKGAGAGTTANY------ 247
Query: 593 NPPMGDAEYLAAFRTIVMPVAKE---FDPQIVLVSAGFDAAAGHPPPLGGYKL-SPACFG 648
PMG + + + K F + ++VS G D P+ +KL SP
Sbjct: 248 --PMGRGTPYSVWGEALTDSLKRIAAFGAEAIVVSLGVDTF--EQDPISFFKLTSP---D 300
Query: 649 YMTQQLMTLADG-KVVLALEGGYDLPSMCDSAEACVRALLG 688
Y+T A G +++ +EGGY +P + + ++ + G
Sbjct: 301 YITMGRTIAASGVPLLVVMEGGYGVPEIGLNVANVLKGVAG 341
>pdb|1NPH|A Chain A, Gelsolin Domains 4-6 In Active, Actin Free Conformation
Identifies Sites Of Regulatory Calcium Ions
Length = 329
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 654 LMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPPLSQEELTRSPCLKAVETLQK 713
LM+L GK ++ +GG +A A +R L Q + S +AVE + K
Sbjct: 95 LMSLFGGKPMIIYKGGTSRDG-GQTAPASIR---------LFQVRASSSGATRAVEVMPK 144
Query: 714 TIAIQVSHWPVLKRSAHTITWSALSAAEDNETVSAMASLSMNKKHLQVED 763
+ A+ + VLK + W A+E +T + + +H+QVE+
Sbjct: 145 SGALNSNDAFVLKTPSAAYLWVGAGASEAEKTAAQELLKVLRSQHVQVEE 194
>pdb|1TZ7|A Chain A, Aquifex Aeolicus Amylomaltase
pdb|1TZ7|B Chain B, Aquifex Aeolicus Amylomaltase
Length = 505
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 64/178 (35%), Gaps = 42/178 (23%)
Query: 93 PFSNPARKDNAVFHHW-RRVTDEGKEYPFARFNKQVSIPTYTDTEYLQELQ-SPTWTRAE 150
P N + F W RRV K + F R + Y + Y +E + W +A
Sbjct: 274 PVYNWEEHEKEGFRWWIRRVLHNLKLFDFLRLDHFRGFEAYWEVPYGEETAVNGRWVKAP 333
Query: 151 TDHLFD-LCHRF--------DLRFIVIHDRY--DTNKFPTSRTIE--------------- 184
LF L F DL FI RY +T K P SR IE
Sbjct: 334 GKTLFKKLLSYFPKNPFIAEDLGFITDEVRYLRETFKIPGSRVIEFAFYDKESEHLPHNV 393
Query: 185 DLKQRYYFVCHTLAKMRGTECSGGNEPKLFDAEHEKKRKEQLKRLFERTPEQVEEEQM 242
+ YY H L +RG + G E + KRLFE +++EE++
Sbjct: 394 EENNVYYTSTHDLPPIRGWFENLGEESR--------------KRLFEYLGREIKEEKV 437
>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|B Chain B, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|C Chain C, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|D Chain D, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
Length = 365
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 671 DLPSMCDSAEACVRALLGDAPPPLSQEELTRSPCLKAVETLQKTIAIQVSHWPVLKRSAH 730
++ + D R ++G PPLS E L R P L+++ ++ + + + +R H
Sbjct: 65 NIAGLGDDILGRARYIIGQ--PPLSAETLARXPALRSILNVESNLLNNXPYEVLFQRGIH 122
Query: 731 TIT 733
+T
Sbjct: 123 VVT 125
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
Length = 1479
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 157 LCHRFDLRFIVIHDRYDTNKFPT 179
L RF+ F + H RY TN FPT
Sbjct: 196 LDERFESDFAIYHQRYSTNTFPT 218
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 409 LCHRFDLRFIVIHDRYDTNKFPT 431
L RF+ F + H RY TN FPT
Sbjct: 196 LDERFESDFAIYHQRYSTNTFPT 218
>pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|B Chain B, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|C Chain C, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|D Chain D, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|E Chain E, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|F Chain F, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications
Length = 1472
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 157 LCHRFDLRFIVIHDRYDTNKFPT 179
L RF+ F + H RY TN FPT
Sbjct: 196 LDERFESDFAIYHQRYSTNTFPT 218
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 409 LCHRFDLRFIVIHDRYDTNKFPT 431
L RF+ F + H RY TN FPT
Sbjct: 196 LDERFESDFAIYHQRYSTNTFPT 218
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,506,615
Number of Sequences: 62578
Number of extensions: 1077863
Number of successful extensions: 2338
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2255
Number of HSP's gapped (non-prelim): 52
length of query: 774
length of database: 14,973,337
effective HSP length: 106
effective length of query: 668
effective length of database: 8,340,069
effective search space: 5571166092
effective search space used: 5571166092
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)