Query psy15137
Match_columns 774
No_of_seqs 549 out of 1886
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 21:32:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15137.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15137hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2656|consensus 100.0 3E-101 6E-106 814.8 28.9 354 1-372 2-404 (445)
2 COG0123 AcuC Deacetylases, inc 100.0 1.3E-49 2.9E-54 432.2 17.2 209 460-691 100-314 (340)
3 PF00850 Hist_deacetyl: Histon 100.0 3.2E-49 7E-54 426.3 17.6 188 482-687 117-311 (311)
4 PTZ00346 histone deacetylase; 100.0 4.3E-48 9.3E-53 426.9 26.2 225 481-726 146-398 (429)
5 KOG1343|consensus 100.0 3.2E-48 7E-53 453.2 17.4 232 480-727 562-796 (797)
6 PTZ00063 histone deacetylase; 100.0 8.7E-46 1.9E-50 410.8 21.0 188 480-689 128-319 (436)
7 KOG1342|consensus 100.0 7.1E-38 1.5E-42 333.7 16.3 187 497-691 127-323 (425)
8 KOG2656|consensus 100.0 3.9E-36 8.5E-41 319.7 3.3 154 324-496 78-231 (445)
9 PF05499 DMAP1: DNA methyltran 100.0 4.3E-32 9.4E-37 265.9 13.0 132 239-371 1-176 (176)
10 KOG1343|consensus 100.0 4.3E-31 9.4E-36 309.7 9.4 248 465-733 142-396 (797)
11 KOG1344|consensus 99.8 4.9E-20 1.1E-24 186.6 8.4 166 497-681 131-316 (324)
12 cd00167 SANT 'SWI3, ADA2, N-Co 96.6 0.0011 2.4E-08 50.2 1.8 43 145-193 1-44 (45)
13 PF00249 Myb_DNA-binding: Myb- 96.1 0.0025 5.5E-08 50.5 1.2 44 145-193 3-47 (48)
14 smart00717 SANT SANT SWI3, AD 96.1 0.0033 7.3E-08 48.2 1.8 45 144-194 2-47 (49)
15 PF13921 Myb_DNA-bind_6: Myb-l 95.2 0.0076 1.7E-07 49.7 0.9 41 146-192 1-41 (60)
16 cd00167 SANT 'SWI3, ADA2, N-Co 95.1 0.011 2.4E-07 44.6 1.6 43 397-445 1-44 (45)
17 PLN03212 Transcription repress 94.8 0.051 1.1E-06 57.5 5.9 62 135-202 66-131 (249)
18 PLN03091 hypothetical protein; 94.6 0.039 8.5E-07 62.4 4.7 63 135-203 55-121 (459)
19 PF00249 Myb_DNA-binding: Myb- 94.4 0.014 3.1E-07 46.2 0.7 44 396-444 2-46 (48)
20 smart00717 SANT SANT SWI3, AD 94.4 0.023 5E-07 43.5 1.7 45 396-446 2-47 (49)
21 PF13921 Myb_DNA-bind_6: Myb-l 92.9 0.041 9E-07 45.3 0.9 41 398-444 1-41 (60)
22 PLN03091 hypothetical protein; 91.5 0.18 4E-06 57.2 4.1 61 387-453 55-119 (459)
23 PLN03212 Transcription repress 91.1 0.21 4.4E-06 53.1 3.8 60 387-452 66-129 (249)
24 COG3914 Spy Predicted O-linked 80.7 15 0.00032 43.8 11.6 124 529-687 338-481 (620)
25 PF09757 Arb2: Arb2 domain; I 51.3 11 0.00024 38.1 2.5 26 702-727 9-34 (178)
26 TIGR03018 pepcterm_TyrKin exop 50.6 1.6E+02 0.0035 30.0 11.0 52 603-672 134-185 (207)
27 PF13837 Myb_DNA-bind_4: Myb/S 48.6 4.9 0.00011 35.3 -0.5 58 144-203 2-73 (90)
28 TIGR03029 EpsG chain length de 47.6 1.7E+02 0.0037 31.0 11.0 15 525-539 132-146 (274)
29 cd05560 Xcc1710_like Xcc1710_l 45.0 13 0.00029 34.8 1.8 27 309-335 73-101 (109)
30 PHA00649 hypothetical protein 44.0 43 0.00093 29.3 4.5 38 305-347 16-55 (83)
31 PF13873 Myb_DNA-bind_5: Myb/S 42.5 15 0.00032 31.7 1.6 51 143-194 2-69 (78)
32 cd00248 Mth938-like Mth938-lik 41.4 18 0.00039 33.8 2.1 27 309-335 73-101 (109)
33 PF04430 DUF498: Protein of un 40.3 15 0.00033 34.2 1.4 27 309-335 74-102 (110)
34 cd01835 SGNH_hydrolase_like_3 39.0 1.3E+02 0.0027 29.8 7.9 41 584-629 41-81 (193)
35 TIGR02707 butyr_kinase butyrat 38.8 83 0.0018 35.5 7.2 64 608-690 282-347 (351)
36 cd05126 Mth938 Mth938 domain. 35.5 26 0.00056 33.4 2.1 26 309-334 80-107 (117)
37 PRK11519 tyrosine kinase; Prov 34.3 2.3E+02 0.0049 35.1 10.5 20 525-545 555-574 (719)
38 PRK14476 nitrogenase molybdenu 32.3 1.6E+02 0.0034 34.4 8.3 71 603-686 78-153 (455)
39 COG5105 MIH1 Mitotic inducer, 31.3 1.6E+02 0.0034 33.1 7.4 46 618-671 304-353 (427)
40 KOG0048|consensus 30.8 27 0.00058 37.1 1.6 44 393-442 60-103 (238)
41 cd05125 Mth938_2P1-like Mth938 30.6 31 0.00067 32.8 1.8 26 309-334 75-102 (114)
42 KOG0048|consensus 30.1 26 0.00057 37.1 1.4 51 143-199 62-113 (238)
43 PRK09841 cryptic autophosphory 28.0 4.5E+02 0.0098 32.5 11.6 18 525-542 560-577 (726)
44 cd01443 Cdc25_Acr2p Cdc25 enzy 27.2 2.4E+02 0.0053 25.7 7.2 45 616-671 64-109 (113)
45 PF08963 DUF1878: Protein of u 26.4 31 0.00066 32.9 0.9 26 137-162 29-54 (113)
46 PRK09856 fructoselysine 3-epim 26.3 6.9E+02 0.015 26.3 11.3 26 396-421 42-67 (275)
47 PF13873 Myb_DNA-bind_5: Myb/S 25.7 26 0.00057 30.2 0.4 19 395-413 2-20 (78)
48 cd01967 Nitrogenase_MoFe_alpha 25.0 2.1E+02 0.0046 32.3 7.6 71 603-685 73-144 (406)
49 PTZ00063 histone deacetylase; 24.5 20 0.00043 41.6 -0.8 39 401-446 28-66 (436)
50 COG1168 MalY Bifunctional PLP- 24.4 51 0.0011 37.6 2.4 26 145-172 174-199 (388)
51 TIGR01969 minD_arch cell divis 23.7 69 0.0015 33.0 3.1 14 526-539 30-43 (251)
52 PHA02550 32 single-stranded DN 23.4 89 0.0019 34.4 3.9 65 116-203 186-250 (304)
53 cd04502 SGNH_hydrolase_like_7 23.3 1.9E+02 0.0042 27.9 6.0 43 611-658 44-87 (171)
54 cd01972 Nitrogenase_VnfE_like 22.9 2.6E+02 0.0056 32.1 7.8 73 603-687 75-148 (426)
55 cd01836 FeeA_FeeB_like SGNH_hy 22.7 2.1E+02 0.0046 28.1 6.3 35 584-628 44-78 (191)
56 cd01966 Nitrogenase_NifN_1 Nit 22.7 3.4E+02 0.0074 31.2 8.7 70 604-686 68-142 (417)
57 PF13472 Lipase_GDSL_2: GDSL-l 21.9 1.3E+02 0.0028 28.2 4.4 32 596-628 41-72 (179)
58 PF08963 DUF1878: Protein of u 21.8 80 0.0017 30.1 2.8 51 340-413 3-53 (113)
59 cd01981 Pchlide_reductase_B Pc 21.6 2.5E+02 0.0055 32.2 7.4 58 604-673 72-130 (430)
60 PF09754 PAC2: PAC2 family; I 21.5 91 0.002 32.0 3.5 33 601-633 82-114 (219)
61 COG1168 MalY Bifunctional PLP- 21.4 65 0.0014 36.7 2.5 26 396-423 173-198 (388)
No 1
>KOG2656|consensus
Probab=100.00 E-value=2.8e-101 Score=814.77 Aligned_cols=354 Identities=50% Similarity=0.855 Sum_probs=302.4
Q ss_pred CcchhhHHhCCCCCCCcchhhhhhccccccccCCCCccccCCCCCCchHHHHHhhcCCCCCCCCcccccCCCcccchhhh
Q psy15137 1 MTSDIRDILELERDAPAEITREAIIGVDKTRKMQPNKYKKEKRPEGMAREVFALLCNDNRDAPPLLPTDSGQGYKHTKAK 80 (774)
Q Consensus 1 m~~Dv~diL~l~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~krp~Gm~REv~~Llg~~~~~~pp~~p~~~~~~~~~~k~k 80 (774)
|++||||||+|++++.+. ..|+++++...+...+||+||+||||||||+ |+|||+|++++. |+. ++
T Consensus 2 ~saDirDIL~l~~~t~~~--------~~kq~s~~rs~t~s~rrPeGm~REvyaLlg~---n~pPL~ps~~~~-fke--k~ 67 (445)
T KOG2656|consen 2 TSADIRDILELPQKTRSL--------TNKQKSKPRSSTESRRRPEGMSREVYALLGE---NAPPLLPSDTNN-FKE--KR 67 (445)
T ss_pred CcccHHHHhcCCCCCCCC--------cccccccCCCchhccCCCcchhHHHHHHhcC---CCCCccccccch-hhh--cc
Confidence 589999999999863321 1222222222244678999999999999996 699999998753 554 57
Q ss_pred hCCCCCccceeecCCCCCCCCCceEeeeeecCCCCCCCCCccccccccccccCHHHHHhhcCCCCCChhHHHHHHHHhhh
Q psy15137 81 LGMRKVRPWKWLPFSNPARKDNAVFHHWRRVTDEGKEYPFARFNKQVSIPTYTDTEYLQELQSPTWTRAETDHLFDLCHR 160 (774)
Q Consensus 81 ~~~~k~~~W~~~~F~n~aR~D~l~l~HW~r~~~~~~~y~FakfN~~~~i~~yt~eeY~~~l~~~~Wt~eETd~Lf~Lc~~ 160 (774)
++++|+++|+|+||+||||+|+++||||||+++.++||||||||++|+||.||||||+.||.|+.||++||||||+||++
T Consensus 68 l~s~K~~~W~w~pFtn~aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~ 147 (445)
T KOG2656|consen 68 LGSKKVRPWKWVPFTNSARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKR 147 (445)
T ss_pred CccccCCCceeeccCCccccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceeEEEeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCC-CC--CCChHHHHHHHHHHHHHHccCHHHH
Q psy15137 161 FDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVCHTLAKMRGTECSGGNE-PK--LFDAEHEKKRKEQLKRLFERTPEQV 237 (774)
Q Consensus 161 fdlr~~vI~DRy~~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~~~~~~~~~-~~--~fd~~~E~~RK~~l~~l~~rt~~q~ 237 (774)
||||||||+|||+.++++++|||||||+|||+||++|+++|++ ..++ .+ +||++||++||+||++||+||++|+
T Consensus 148 fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~---s~sdllk~~~yd~e~Er~RKk~L~~L~sRt~~qv 224 (445)
T KOG2656|consen 148 FDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAP---SNSDLLKSLVYDAEHERERKKYLERLLSRTPEQV 224 (445)
T ss_pred cCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHccCC---CchhhhhccccchHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999999999999999999999999999999999998 2233 33 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhhhcc-------ccccccccccCCCCccccccCC----CCCc----ccc
Q psy15137 238 EEEQMLLAELKKIEIRRKERDRKTQDLQKLMTAADM-------QADNRKTDKKMPPKRKLTHQIR----PRSL----DTS 302 (774)
Q Consensus 238 ~eEe~L~~E~rrie~~~k~~~~~~~dl~kl~~~~~~-------~~~~~~~~~~~~~k~k~~~~~~----p~~~----~~a 302 (774)
+||++|++|+||||+++|+++++++||+|||+.+|. ++.+...+.+..++ |..++.. |+++ .++
T Consensus 225 aEEe~Ll~E~KkiEarkke~~~~~~~l~rlld~ad~~i~~~stS~~~~~~~~~~~a~-kt~~k~~~a~v~a~~~~s~~ss 303 (445)
T KOG2656|consen 225 AEEEALLVELKKIEARKKERLAERQDLLRLLDSADGDITQYSTSPGMSSLENALLAK-KTRQKKHEANVPASPRESWMSS 303 (445)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhcccccccccccChhHHHHHHHHhhh-hhhcccccccCccccchhhhhh
Confidence 999999999999999999999999999999999994 33322222222211 1111110 1111 110
Q ss_pred ------------------------c---chhhh-HHHHHcC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy15137 303 ------------------------V---KTTAF-QTLIDLG--LNPIPTEEIVTHYNELRSDMVLLYELKQALDNYQFEL 352 (774)
Q Consensus 303 ------------------------i---k~k~i-~~L~elg--~~p~pT~~ic~~~n~LR~di~~L~elrka~~~~E~El 352 (774)
| |+|++ |+|+++| ++|.||+.+|..||+||+|+++|++|+.++..|++|+
T Consensus 304 ~~~F~~~~~~l~tlr~q~m~~panvgqrkiK~~EQ~lq~~~v~~sp~pte~l~~~fnElrs~vvtl~eL~~~l~~~~~e~ 383 (445)
T KOG2656|consen 304 GIKFADLRVALVTLRSQRMKQPANVGQRKIKRLEQELQELGVRLSPAPTEQLCKSFNELRSDVVTLLELSPALYLCEYEL 383 (445)
T ss_pred hhhcccchhhhhccchhhccCccccchhhhHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhh
Confidence 1 78999 9999999 7789999999999999999999999999999999999
Q ss_pred HHhhhhc-cccCCCCccccCC
Q psy15137 353 QSLKHQY-EAVHPGETFQIPE 372 (774)
Q Consensus 353 ~~lr~~~-ea~~~~~~~~~p~ 372 (774)
+++|+++ +++++..++.+|+
T Consensus 384 ~s~k~~~~~~~~~~~~l~~P~ 404 (445)
T KOG2656|consen 384 SSLKHALNEALAILQELSLPS 404 (445)
T ss_pred hhhhhhhhhhhhhhhhcCCCC
Confidence 9999999 8999999998883
No 2
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.3e-49 Score=432.19 Aligned_cols=209 Identities=39% Similarity=0.637 Sum_probs=181.4
Q ss_pred CCCcccccHHHHHHHHHHHHHHhccCcccccC-Ccccchh--hhhhhcccCCchHHhHHHHHhcCCCCcCeeEEEeccCc
Q psy15137 460 GNEPKLFDAEHEKKRKEQLKRLFERTPEQCGT-GAGLGFN--INIAWSGALNPPMGDAEYLSSDGREKTQYFPFRCWDVH 536 (774)
Q Consensus 460 g~~~~~fd~~~E~eRK~~l~~l~~Rtp~~~~~-~~glgf~--~nia~~gg~hha~~aa~yL~~~~~~~~~RVlIVD~DvH 536 (774)
|++..+.+...+.+ . ......|+|+||+. ..++||| ||+|+ ||++|+++ +.+||+|||||||
T Consensus 100 G~al~A~~~v~~g~-~--~~~~~~rppgHHA~~~~a~GFC~fNn~Ai---------aa~~l~~~---~~~RVaIiD~DvH 164 (340)
T COG0123 100 GGALTAVDAVLEGE-D--NAFALVRPPGHHAGRDRASGFCLFNNVAI---------AAKYLLKK---GVKRVAIIDFDVH 164 (340)
T ss_pred hHHHHHHHHHHcCc-c--ceEEECCCCcccccCCCCceeeeecHHHH---------HHHHHHHc---CCCcEEEEEecCC
Confidence 34444555555443 1 11235799999985 4444555 56666 89999875 6899999999999
Q ss_pred CcchHHHHhhcCCceEEEEccccCCCCCCCCCCCCCccCCCCCCcceeeeccCCCCCCCCCcHHHHHHHHHHHHHHHHhc
Q psy15137 537 HGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEF 616 (774)
Q Consensus 537 HGnGTq~iF~~dp~Vl~iSiH~~~~g~fyPgtG~~~e~G~g~g~G~~vNvpl~~gl~~~~gD~~yl~af~~vl~pi~~~f 616 (774)
||||||+|||+||+|+|+|+|+++. .+|||||.++++|.|. +|++||||||.| ++|++|+.+|+.+|+|+++.|
T Consensus 165 HGnGTqeify~~~~V~~~S~H~~~~-~~yPgtg~~~e~g~g~-~g~~vNiPLp~g----~~d~~y~~a~~~~v~~~~~~f 238 (340)
T COG0123 165 HGNGTQEIFYDDDDVLTVSLHQDGR-PFYPGTGGADEIGEGK-EGNNVNIPLPPG----TGDDSYLEALEEIVLPLLEEF 238 (340)
T ss_pred CChhhHHHHccCCCeEEEeccCCCC-CCCCcCCCccccccCc-ccceEeeecCCC----CCcHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999754 7999999999999999 999999998655 999999999999999999999
Q ss_pred CCCEEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHhhhcC---CcEEEEeCCCCCchhHHHHHHHHHHHHcCCCC
Q psy15137 617 DPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQQLMTLAD---GKVVLALEGGYDLPSMCDSAEACVRALLGDAP 691 (774)
Q Consensus 617 ~PdlIlVsaGfDa~~~Dp~plg~~~lt~~~y~~l~~~l~~la~---grvv~vLEGGY~~~~l~~~~~a~v~~Llg~~~ 691 (774)
+||+||||||||+|.+| |||.++||+++|.++++.+++++. +|+++||||||+..+++.++.+++.+|+|...
T Consensus 239 ~PdlvivsaG~D~h~~D--pl~~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~vleGGY~~~~l~~~~~~~~~~l~~~~~ 314 (340)
T COG0123 239 KPDLVIVSAGFDAHRGD--PLGRLNLTEEGYAKIGRAVRKLAEGYGGPVVAVLEGGYNLDALARSLVAFLAGLAGLVE 314 (340)
T ss_pred CCCEEEEecCcccCCCC--ccceeecCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCChHHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999 899999999999999999999874 69999999999999999999999999999653
No 3
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=100.00 E-value=3.2e-49 Score=426.26 Aligned_cols=188 Identities=47% Similarity=0.793 Sum_probs=153.5
Q ss_pred hccCcccccC-Ccccchhh--hhhhcccCCchHHhHHHHHhcCCCCcCeeEEEeccCcCcchHHHHhhcCCceEEEEccc
Q psy15137 482 FERTPEQCGT-GAGLGFNI--NIAWSGALNPPMGDAEYLSSDGREKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHR 558 (774)
Q Consensus 482 ~~Rtp~~~~~-~~glgf~~--nia~~gg~hha~~aa~yL~~~~~~~~~RVlIVD~DvHHGnGTq~iF~~dp~Vl~iSiH~ 558 (774)
++|+|+||+. ..++|||+ |+|+ ||.|++.. ++.+||+|||||||||||||+|||+||+|||+|||+
T Consensus 117 ~~rppgHHA~~~~a~GFC~~Nnvai---------aa~~l~~~--~~~~rV~iiD~DvHhGnGtq~if~~d~~V~~~SiH~ 185 (311)
T PF00850_consen 117 LVRPPGHHAERDRAMGFCYFNNVAI---------AAKYLRKK--YGLKRVAIIDFDVHHGNGTQEIFYDDPRVLYISIHQ 185 (311)
T ss_dssp EESS--TT-BTTBBBTTBSS-HHHH---------HHHHHHHT--TTTSSEEEEE-SSS--HHHHHHTTT-SSEEEEEEEE
T ss_pred ecCccccccCcCcCcceeeeccHHH---------HHHHHhhc--cccceEEEEEeCCCCcccchhheeCCCCEEecCccc
Confidence 5699999984 44456654 6665 89999873 568999999999999999999999999999999999
Q ss_pred cCCCCCCC-CCCCCCccCCCCCCcceeeeccCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCC
Q psy15137 559 HDDGNFFP-GTGGPIECGTGAGLGFNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPL 637 (774)
Q Consensus 559 ~~~g~fyP-gtG~~~e~G~g~g~G~~vNvpl~~gl~~~~gD~~yl~af~~vl~pi~~~f~PdlIlVsaGfDa~~~Dp~pl 637 (774)
++ +.||| |||..+++|.|.|.|+++|||||.| ++|.+|+.+|+++|.|++++|+||+||||||||+|.+| |+
T Consensus 186 ~~-~~~yP~~tG~~~e~G~~~g~g~~~NipL~~g----~~d~~y~~~~~~~l~~~~~~f~P~~ivvsaG~D~~~~D--pl 258 (311)
T PF00850_consen 186 YP-GNFYPFGTGFPDEIGEGKGKGYNLNIPLPPG----TGDDEYLEAFEEILLPALEEFRPDLIVVSAGFDAHAGD--PL 258 (311)
T ss_dssp -C-TTSTTTSS--TT--ESGGGTTSEEEEEE-TT----EBHHHHHHHHHHHHHHHHHHHT-SEEEEEE-STTBTTS--TT
T ss_pred cc-cccCCCcCCCccccCCCcccceeEecccccc----cchHHHHHHHhhccccchhcccCcEEEEccCcccchhc--cc
Confidence 85 57999 9999999999999999999998765 99999999999999999999999999999999999999 89
Q ss_pred CccccCHHHHHHHHHHHhhhcC---CcEEEEeCCCCCchhHHHHHHHHHHHHc
Q psy15137 638 GGYKLSPACFGYMTQQLMTLAD---GKVVLALEGGYDLPSMCDSAEACVRALL 687 (774)
Q Consensus 638 g~~~lt~~~y~~l~~~l~~la~---grvv~vLEGGY~~~~l~~~~~a~v~~Ll 687 (774)
|+++||+++|.++++.|++++. +|++++|||||++.+++.++.+++++|.
T Consensus 259 g~~~lt~~~~~~~~~~~~~~a~~~~~~~v~vleGGY~~~~~~~~~~~~~~~L~ 311 (311)
T PF00850_consen 259 GGLNLTPEGYRELTRRLKSLAKRHCIPVVSVLEGGYNPESLARSWAAVIAALA 311 (311)
T ss_dssp -SEBB-HHHHHHHHHHHHTTHSHHSGCEEEEE-S-SSHHHHHHHHHHHHHHH-
T ss_pred cCcCCCHHHHHHHHHHHHHHHHhcCCcEEEEECCCCChhHHHHHHHHHHHHhC
Confidence 9999999999999999999873 5999999999999999999999999883
No 4
>PTZ00346 histone deacetylase; Provisional
Probab=100.00 E-value=4.3e-48 Score=426.86 Aligned_cols=225 Identities=25% Similarity=0.397 Sum_probs=189.2
Q ss_pred HhccCcc-cccC-Ccccchhh--hhhhcccCCchHHhHHHHHhcCCCCcCeeEEEeccCcCcchHHHHhhcCCceEEEEc
Q psy15137 481 LFERTPE-QCGT-GAGLGFNI--NIAWSGALNPPMGDAEYLSSDGREKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSI 556 (774)
Q Consensus 481 l~~Rtp~-~~~~-~~glgf~~--nia~~gg~hha~~aa~yL~~~~~~~~~RVlIVD~DvHHGnGTq~iF~~dp~Vl~iSi 556 (774)
++++++| ||+. ..++|||+ |+|+ ||.+|++. .+||||||||||||||||+|||+||+|||+|+
T Consensus 146 Ai~~pGG~HHA~~~~a~GFC~fNdvAI---------Aa~~ll~~----~~RVliID~DVHHGnGTqeiF~~dp~Vl~vSi 212 (429)
T PTZ00346 146 AVHWGGGMHHSKCGECSGFCYVNDIVL---------GILELLKC----HDRVLYVDIDMHHGDGVDEAFCTSDRVFTLSL 212 (429)
T ss_pred EEeCCCCcCcCCCCCCCcchHHhHHHH---------HHHHHHHc----CCeEEEEeCCCCCCchHHHHHcCCCCeEEEEe
Confidence 4677777 8874 55566665 5555 78888754 47999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCccCCCCCCcceeeeccCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCC
Q psy15137 557 HRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPP 636 (774)
Q Consensus 557 H~~~~g~fyPgtG~~~e~G~g~g~G~~vNvpl~~gl~~~~gD~~yl~af~~vl~pi~~~f~PdlIlVsaGfDa~~~Dp~p 636 (774)
|+++. .||||||...++|.|.|.||++|||||.| ++|++|+.+|+.+|.|++++|+||+||||||||+|.+| |
T Consensus 213 Hq~~~-~fyPgtG~~~e~G~g~G~g~~vNVPL~~G----~~D~~Yl~~f~~ii~p~l~~F~PdlIvvsaG~Da~~~D--p 285 (429)
T PTZ00346 213 HKFGE-SFFPGTGHPRDVGYGRGRYYSMNLAVWDG----ITDFYYLGLFEHALHSIVRRYSPDAIVLQCGADSLAGD--R 285 (429)
T ss_pred cCCCC-CCCCCCCCccccCCCCCceeEEeeeCCCC----cCHHHHHHHHHHHHHHHHHhcCCCEEEEECCccCCCCC--C
Confidence 99853 59999999999999999999999998765 89999999999999999999999999999999999999 8
Q ss_pred CCccccCHHHHHHHHHHHhhhcCCcEEEEeCCCCCchhHHHHHHHHHHHHcCCCCCCC---C-----ch-----------
Q psy15137 637 LGGYKLSPACFGYMTQQLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPPL---S-----QE----------- 697 (774)
Q Consensus 637 lg~~~lt~~~y~~l~~~l~~la~grvv~vLEGGY~~~~l~~~~~a~v~~Llg~~~~~l---~-----~~----------- 697 (774)
||+|+||+++|.++++.++++ ++|++++|||||++.++++||..++..|+|.+.++- + ..
T Consensus 286 Lg~l~LT~~g~~~~~~~l~~~-~~plv~vleGGY~~~~lar~w~~~t~~l~g~~i~~~~~lp~~~~~~~~~~~~~~~~~~ 364 (429)
T PTZ00346 286 LGLLNLSSFGHGQCVQAVRDL-GIPMLALGGGGYTIRNVAKLWAYETSILTGHPLPPNTVLPVAEMPLSGWLFQDSPLLI 364 (429)
T ss_pred CCCceeCHHHHHHHHHHHHhc-CCCEEEEeCCcCCccHHHHHHHHHHHHHcCCCCCCCCCCCCCCCchhhhhcCCCcccc
Confidence 999999999999999999986 689999999999999999999999999999875421 1 00
Q ss_pred ---hhcc--CCcHHHHHHHHHHHHHHhccCCCCc
Q psy15137 698 ---ELTR--SPCLKAVETLQKTIAIQVSHWPVLK 726 (774)
Q Consensus 698 ---~~~~--~~~~~a~~~l~~v~~~~~~~W~~l~ 726 (774)
+... .+..+.-+.++.+++..+.|-+.+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (429)
T PTZ00346 365 VAQDRSNHVLPGLHCQRAYQMMTEQIDRHVPHIQ 398 (429)
T ss_pred ccccccccCCCcchhHHHHHHHHHHHHhhhhccC
Confidence 0000 0223455667777777777766665
No 5
>KOG1343|consensus
Probab=100.00 E-value=3.2e-48 Score=453.20 Aligned_cols=232 Identities=59% Similarity=1.007 Sum_probs=217.1
Q ss_pred HHhccCcccccC---CcccchhhhhhhcccCCchHHhHHHHHhcCCCCcCeeEEEeccCcCcchHHHHhhcCCceEEEEc
Q psy15137 480 RLFERTPEQCGT---GAGLGFNINIAWSGALNPPMGDAEYLSSDGREKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSI 556 (774)
Q Consensus 480 ~l~~Rtp~~~~~---~~glgf~~nia~~gg~hha~~aa~yL~~~~~~~~~RVlIVD~DvHHGnGTq~iF~~dp~Vl~iSi 556 (774)
..+.|+||||++ ..||||++|+|+ |+.+++... ...||+|||||||||||||.+||.||+|||+|+
T Consensus 562 ~avvRppGHha~~~~a~gfc~fn~vai---------aak~l~~~~--~~~rilivdwDvhhgngtq~~f~~~~~vlyisl 630 (797)
T KOG1343|consen 562 FAVVRPPGHHAEASTAMGFCFFNSVAI---------AAKLLQQRS--KASRILIVDWDVHHGNGTQQAFYSDPSVLYISL 630 (797)
T ss_pred eeEecCCccccccCCcceeeeecchhh---------hhHHhhhhh--hhcceEEEeecccCCcceeeeeccCcccccccc
Confidence 346899999985 445666678887 788888653 589999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCccCCCCCCcceeeeccCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCC
Q psy15137 557 HRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPP 636 (774)
Q Consensus 557 H~~~~g~fyPgtG~~~e~G~g~g~G~~vNvpl~~gl~~~~gD~~yl~af~~vl~pi~~~f~PdlIlVsaGfDa~~~Dp~p 636 (774)
|++++|+|||++|..+++|.+.|.|+|+||+|+.|+ .+|.+|+.+|+.+++||+++|.||+|+||+|||++.+| |
T Consensus 631 hr~~~G~~fp~~g~~~e~g~~~g~g~~vNv~~~~~~---~~D~ey~~a~~~vv~Pia~~F~pd~VlvSagfDaa~~d--p 705 (797)
T KOG1343|consen 631 HRHDDGNFFPGSGAPDEVGKGEGVGFNVNVAWTGGL---DPDAEYLAAFRTVVMPIAYEFNPDLVLVSAGFDAAEGD--P 705 (797)
T ss_pred chhccCCcCCCCCCchhcccccccceeecccccCCC---CCCHHHHHHHHHhhHHHHHHhCCCeEEEeccccccccC--c
Confidence 999999999999999999999999999999999875 45999999999999999999999999999999999998 8
Q ss_pred CCccccCHHHHHHHHHHHhhhcCCcEEEEeCCCCCchhHHHHHHHHHHHHcCCCCCCCCchhhccCCcHHHHHHHHHHHH
Q psy15137 637 LGGYKLSPACFGYMTQQLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPPLSQEELTRSPCLKAVETLQKTIA 716 (774)
Q Consensus 637 lg~~~lt~~~y~~l~~~l~~la~grvv~vLEGGY~~~~l~~~~~a~v~~Llg~~~~~l~~~~~~~~~~~~a~~~l~~v~~ 716 (774)
||++.+|++||+.+|++|+++|+||++.+|||||++.++++++.+|+++|+|.+.+++++..+.+.|+.+++.+|++++.
T Consensus 706 lg~~~vt~~~~~~lt~~l~~lagGRvv~~LEggy~lt~is~s~~~~~~~llg~~~p~~~~~~~~~~~~~~a~~~l~~~~~ 785 (797)
T KOG1343|consen 706 LGGYKVTAECFGYLTQQLMGLAGGRVVLALEGGYDLTAISDSAEACVRALLGDSLPPLSEAYLPQKPNSNAVATLEKVIE 785 (797)
T ss_pred cccccccHhHHHHHHHHHHHhcCCcEEEEecCCcchhhhhHHHHHHHHhccCCCCCCccccccCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888888999999999999999
Q ss_pred HHhccCCCCcc
Q psy15137 717 IQVSHWPVLKR 727 (774)
Q Consensus 717 ~~~~~W~~l~~ 727 (774)
+|++||+|++.
T Consensus 786 ~~~~~w~~~~~ 796 (797)
T KOG1343|consen 786 VQSKYWSCLQG 796 (797)
T ss_pred hhhcccccccC
Confidence 99999999985
No 6
>PTZ00063 histone deacetylase; Provisional
Probab=100.00 E-value=8.7e-46 Score=410.76 Aligned_cols=188 Identities=21% Similarity=0.414 Sum_probs=171.1
Q ss_pred HHhccCcc-cccC-Ccccchhh--hhhhcccCCchHHhHHHHHhcCCCCcCeeEEEeccCcCcchHHHHhhcCCceEEEE
Q psy15137 480 RLFERTPE-QCGT-GAGLGFNI--NIAWSGALNPPMGDAEYLSSDGREKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLS 555 (774)
Q Consensus 480 ~l~~Rtp~-~~~~-~~glgf~~--nia~~gg~hha~~aa~yL~~~~~~~~~RVlIVD~DvHHGnGTq~iF~~dp~Vl~iS 555 (774)
..++|++| ||+. ..++|||+ ||++ ||.+|++. .+||||||||||||||||+|||+||+|||+|
T Consensus 128 iAin~~GG~HHA~~~~A~GFC~~Ndiai---------Ai~~L~~~----~~RVliID~DvHHGdGtqe~F~~~~~VltvS 194 (436)
T PTZ00063 128 ICVNWSGGLHHAKRSEASGFCYINDIVL---------GILELLKY----HARVMYIDIDVHHGDGVEEAFYVTHRVMTVS 194 (436)
T ss_pred EEeeCCCCCCCCccCCCCceeeecHHHH---------HHHHHHHh----CCeEEEEeCCCCCCcchHHHhccCCCeEEEE
Confidence 35789999 8874 44556655 5555 78888753 3799999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCccCCCCCCcceeeeccCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCC
Q psy15137 556 IHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPP 635 (774)
Q Consensus 556 iH~~~~g~fyPgtG~~~e~G~g~g~G~~vNvpl~~gl~~~~gD~~yl~af~~vl~pi~~~f~PdlIlVsaGfDa~~~Dp~ 635 (774)
+|+++ +||||||..+++|.|.|.||+|||||+.| ++|++|+.+|+.+|.|+++.|+||+||||||||+|.+|
T Consensus 195 ~H~~~--~ffPgtG~~~e~G~g~G~g~~vNvPL~~G----~~D~~Y~~~f~~ii~~~i~~f~Pd~IvvqaG~D~~~~D-- 266 (436)
T PTZ00063 195 FHKFG--DFFPGTGDVTDIGVAQGKYYSVNVPLNDG----IDDDSFVDLFKPVISKCVEVYRPGAIVLQCGADSLTGD-- 266 (436)
T ss_pred eccCC--CcCCCCCCccccCCCCCCceEEEeeCCCC----CCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCC--
Confidence 99974 59999999999999999999999998765 89999999999999999999999999999999999999
Q ss_pred CCCccccCHHHHHHHHHHHhhhcCCcEEEEeCCCCCchhHHHHHHHHHHHHcCC
Q psy15137 636 PLGGYKLSPACFGYMTQQLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGD 689 (774)
Q Consensus 636 plg~~~lt~~~y~~l~~~l~~la~grvv~vLEGGY~~~~l~~~~~a~v~~Llg~ 689 (774)
|||+++||.++|+++++.++++ ++|++++|||||++.++++||..++..++|.
T Consensus 267 pLg~l~Lt~~g~~~~~~~~~~~-~~pil~l~gGGY~~~~lar~w~~~t~~~~~~ 319 (436)
T PTZ00063 267 RLGRFNLTIKGHAACVEFVRSL-NIPLLVLGGGGYTIRNVARCWAYETGVILNK 319 (436)
T ss_pred CCCCcccCHHHHHHHHHHHHhc-CCCEEEEeCccCCchHHHHHHHHHHHHHhCC
Confidence 8999999999999999998886 7899999999999999999999999999996
No 7
>KOG1342|consensus
Probab=100.00 E-value=7.1e-38 Score=333.74 Aligned_cols=187 Identities=26% Similarity=0.492 Sum_probs=166.2
Q ss_pred hhhhhhhcccCCchH----HhHHHHH------hcCCCCcCeeEEEeccCcCcchHHHHhhcCCceEEEEccccCCCCCCC
Q psy15137 497 FNINIAWSGALNPPM----GDAEYLS------SDGREKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFP 566 (774)
Q Consensus 497 f~~nia~~gg~hha~----~aa~yL~------~~~~~~~~RVlIVD~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~fyP 566 (774)
..|+|||+||+|||. ...||+. ..++.-.+|||+||+|+|||||+|++||...+|+++|+|.|.+ .|||
T Consensus 127 ~dIaINW~GGlHHAKK~eASGFCYvNDIVL~ILeLlK~h~RVLYIDIDvHHGDGVEeAFy~TDRVmTvSfHKyg~-~fFP 205 (425)
T KOG1342|consen 127 CDIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKYHKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGP-GFFP 205 (425)
T ss_pred ceEEEecCcccccccccccCcceeehHHHHHHHHHHHhCCceEEEEecccCCccHHHHHhccceeEEEEEEeccC-CCCC
Confidence 357999999999993 2223321 1222235799999999999999999999999999999999854 4999
Q ss_pred CCCCCCccCCCCCCcceeeeccCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCCccccCHHH
Q psy15137 567 GTGGPIECGTGAGLGFNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPAC 646 (774)
Q Consensus 567 gtG~~~e~G~g~g~G~~vNvpl~~gl~~~~gD~~yl~af~~vl~pi~~~f~PdlIlVsaGfDa~~~Dp~plg~~~lt~~~ 646 (774)
|||...++|.|.|+.|.|||||..| ..|..|..+|+.+|-++++.|+|++||++||.|++.+| +||.++||..+
T Consensus 206 GTG~l~d~G~~kGkyyavNVPL~dG----idD~sy~~if~pIi~~v~e~f~P~AiVLQCGaDSL~gD--RlgcFnLsi~G 279 (425)
T KOG1342|consen 206 GTGDLSDIGAGKGKYYAVNVPLKDG----IDDESYESIFKPIISKVMERFQPEAIVLQCGADSLAGD--RLGCFNLSIKG 279 (425)
T ss_pred CCCcceeccCCCCceEEEccchhcc----CCcHHHHHHHHHHHHHHHHHhCCceEEEEcCCccccCC--ccceeeecchh
Confidence 9999999999999999999998766 78999999999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCchhHHHHHHHHHHHHcCCCC
Q psy15137 647 FGYMTQQLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAP 691 (774)
Q Consensus 647 y~~l~~~l~~la~grvv~vLEGGY~~~~l~~~~~a~v~~Llg~~~ 691 (774)
.+...+.++++ +.|++++.+|||++..+++||.-....++|...
T Consensus 280 h~~Cv~fvksf-n~pllvlGGGGYT~rNVARcWtYeT~v~~~~~~ 323 (425)
T KOG1342|consen 280 HAECVKFVKSF-NLPLLVLGGGGYTLRNVARCWTYETGVLLDQEL 323 (425)
T ss_pred HHHHHHHHHHc-CCcEEEecCCccchhhhHHHHHHHhhhhcCccc
Confidence 99999999988 589999999999999999999988888888654
No 8
>KOG2656|consensus
Probab=100.00 E-value=3.9e-36 Score=319.65 Aligned_cols=154 Identities=42% Similarity=0.637 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhccccCCCCccccCCcccccccccccCCchHHhhhcCCCCCchhhh
Q psy15137 324 IVTHYNELRSDMVLLYELKQALDNYQFELQSLKHQYEAVHPGETFQIPEKIFEPTSLLSNLGDTEYLQELQSPTWTRAET 403 (774)
Q Consensus 324 ic~~~n~LR~di~~L~elrka~~~~E~El~~lr~~~ea~~~~~~~~~p~~~~~~t~~v~~ytd~eY~~~L~~~~WtreET 403 (774)
.+.+.|.+|.|-++|+||+++. ..+.++|++.||....|..|||+||+.||.++.||++||
T Consensus 78 w~pFtn~aRkD~~~l~HWvr~~-------------------d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeET 138 (445)
T KOG2656|consen 78 WVPFTNSARKDDATLHHWVRVG-------------------DTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEET 138 (445)
T ss_pred eeccCCccccCCceEEeeeecc-------------------CCCCCCchhhhccccCccccchHHHHHhhccccccHHHH
Confidence 4568899999999999999882 245678999999999999999999999999999999999
Q ss_pred hHHHHHHhHcCcceeEEEcccCCCCCCCCCCHHHHHhhhhhhhHHHHhhcccccCCCCCcccccHHHHHHHHHHHHHHhc
Q psy15137 404 DHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVCYTLAKMRGTECSGGNEPKLFDAEHEKKRKEQLKRLFE 483 (774)
Q Consensus 404 d~Lf~Lc~~fDlR~ivI~DRy~~~~~~~~RtvEDLK~RYY~V~~~L~~~r~~~~s~g~~~~~fd~~~E~eRK~~l~~l~~ 483 (774)
||||+||++|||||+||+||||.+.|++.|||||||+|||+||++|+++|++.-+.--....||++||++||++|.++++
T Consensus 139 D~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~s~sdllk~~~yd~e~Er~RKk~L~~L~s 218 (445)
T KOG2656|consen 139 DYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAPSNSDLLKSLVYDAEHERERKKYLERLLS 218 (445)
T ss_pred HHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHccCCCchhhhhccccchHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999764221112357999999999999999999
Q ss_pred cCcccccCCcccc
Q psy15137 484 RTPEQCGTGAGLG 496 (774)
Q Consensus 484 Rtp~~~~~~~glg 496 (774)
|||+|+++++.+-
T Consensus 219 Rt~~qvaEEe~Ll 231 (445)
T KOG2656|consen 219 RTPEQVAEEEALL 231 (445)
T ss_pred cCHHHHHHHHHHH
Confidence 9999999887653
No 9
>PF05499 DMAP1: DNA methyltransferase 1-associated protein 1 (DMAP1); InterPro: IPR008468 DNA methylation can contribute to transcriptional silencing through several transcriptionally repressive complexes, which include methyl-CpG binding domain proteins (MBDs) and histone deacetylases (HDACs). The chief enzyme that maintains mammalian DNA methylation, DNMT1, can also establish a repressive transcription complex. The non-catalytic N terminus of DNMT1 binds to HDAC2 and DMAP1 (for DNMT1 associated protein), and can mediate transcriptional repression. DMAP1 has intrinsic transcription repressive activity, and binds to the transcriptional co-repressor TSG101. DMAP1 is targeted to replication foci through interaction with the far N terminus of DNMT1 throughout S phase, whereas HDAC2 joins DNMT1 and DMAP1 only during late S phase, providing a platform for how histones may become deacetylated in heterochromatin following replication [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.97 E-value=4.3e-32 Score=265.89 Aligned_cols=132 Identities=64% Similarity=0.962 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhhhc-------cccccccccccCCCCccccccCCCCC-------cccc--
Q psy15137 239 EEQMLLAELKKIEIRRKERDRKTQDLQKLMTAAD-------MQADNRKTDKKMPPKRKLTHQIRPRS-------LDTS-- 302 (774)
Q Consensus 239 eEe~L~~E~rrie~~~k~~~~~~~dl~kl~~~~~-------~~~~~~~~~~~~~~k~k~~~~~~p~~-------~~~a-- 302 (774)
|||+|+.||||||+|+|+||||+|||||||+++| ++++.++.+++.+|| ++++..+|+. +.++
T Consensus 1 EEe~Li~ELrKIE~RKkEREKK~qDLqkLit~ad~~~~~~~~~a~~rk~ekk~~kK-k~~~~~~~~~~~~~~~v~~~agi 79 (176)
T PF05499_consen 1 EEEMLIAELRKIEARKKEREKKTQDLQKLITAADQQPTPATNTAEARKTEKKSSKK-KLPQKARPSKKKESPAVPETAGI 79 (176)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccHhhhhhhhccCCc-ccccCCCcccccccccchhhhcc
Confidence 7999999999999999999999999999999999 444556666666555 4554432211 1110
Q ss_pred ----------------------c---chhhh-HHHHHcC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy15137 303 ----------------------V---KTTAF-QTLIDLG--LNPIPTEEIVTHYNELRSDMVLLYELKQALDNYQFELQS 354 (774)
Q Consensus 303 ----------------------i---k~k~i-~~L~elg--~~p~pT~~ic~~~n~LR~di~~L~elrka~~~~E~El~~ 354 (774)
| |+|+| |+|+||| ++||||++||+.||+||+||++|++||+++++|||||++
T Consensus 80 kFpd~k~~GV~LRSq~mklp~~vGqKk~K~iEq~L~elgv~~~PmPTe~Ic~~fneLRsdivlL~eLk~a~~~~E~El~~ 159 (176)
T PF05499_consen 80 KFPDFKSAGVHLRSQRMKLPSSVGQKKTKAIEQFLQELGVDLNPMPTEEICQEFNELRSDIVLLYELKQALQNCEYELQS 159 (176)
T ss_pred ccccccCCceEeeecccccCcchhhHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 1 78999 9999999 778999999999999999999999999999999999999
Q ss_pred hhhhccccCCCCccccC
Q psy15137 355 LKHQYEAVHPGETFQIP 371 (774)
Q Consensus 355 lr~~~ea~~~~~~~~~p 371 (774)
|||||++++||++++||
T Consensus 160 lr~r~eal~~gk~~~i~ 176 (176)
T PF05499_consen 160 LRHRYEALAPGKTLEIP 176 (176)
T ss_pred HHHHHHhhCCCCCCCCC
Confidence 99999999999999997
No 10
>KOG1343|consensus
Probab=99.97 E-value=4.3e-31 Score=309.74 Aligned_cols=248 Identities=36% Similarity=0.525 Sum_probs=206.4
Q ss_pred cccHHHHHHHHHHHHHHhccCcccccCCc-ccch--hhhhhhcccCCchHHhHHHHHhcCCCCcCeeEEEeccCcCcchH
Q psy15137 465 LFDAEHEKKRKEQLKRLFERTPEQCGTGA-GLGF--NINIAWSGALNPPMGDAEYLSSDGREKTQYFPFRCWDVHHGNGT 541 (774)
Q Consensus 465 ~fd~~~E~eRK~~l~~l~~Rtp~~~~~~~-glgf--~~nia~~gg~hha~~aa~yL~~~~~~~~~RVlIVD~DvHHGnGT 541 (774)
.|+..+..+ ........|+|+||++.. ..|| ++|++.. ++... .+++.+||+|+|||+|||+||
T Consensus 142 ~~~~~~~~~--~~n~~a~v~p~~hhsep~~~~~~cl~n~Va~~---------~~~~~--~~~~~rri~i~d~dvh~g~Gt 208 (797)
T KOG1343|consen 142 SYKAVLAGK--ASNGKADFRPPGHHSEPNLKVGFCLFNNVAER---------RSSPL--LRRKKRRILIVDWDVHHGPGT 208 (797)
T ss_pred ccccccCCc--ccCccCcCCCCCCccccchhcchhHHHHHHHH---------hhccc--cccccceeEeecccccCCCCC
Confidence 455544432 223344679999998744 3445 4577763 22111 123378999999999999999
Q ss_pred HHHhhc--CCceEEEEccccCCCCCCCCC--CCCCccCCCCCCcceeeeccCCCCCCCCCcHHHHHHHHHHHHHHHHhcC
Q psy15137 542 QQIFYS--DKRVLYLSIHRHDDGNFFPGT--GGPIECGTGAGLGFNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFD 617 (774)
Q Consensus 542 q~iF~~--dp~Vl~iSiH~~~~g~fyPgt--G~~~e~G~g~g~G~~vNvpl~~gl~~~~gD~~yl~af~~vl~pi~~~f~ 617 (774)
|..|++ |++|+|+|+|++..|.|||+. |..+.+|.|+|.|+++|+||+.+ +++|.+|..+|..+++|.+.+|+
T Consensus 209 q~~~~~~~d~~vl~~s~~r~e~~~f~P~~~~g~~~~~~~g~~~g~~~nl~~~~~---g~~~~dy~~~~~~~~~~~~~efq 285 (797)
T KOG1343|consen 209 QPSSPNNGDQRVLYFSLHRLETGPFLPNITLGLATLRGGGPGLGQTGNLPWNQV---GMTDADYEAAFLHVLLPHASEFQ 285 (797)
T ss_pred CCccCCCcccccccccchhcccCCcCCCCccchHHHhCcCCCcceeeccchhhc---CCcchhhhhhhhccCccchhhcC
Confidence 999999 999999999999999999984 77789999999999999999876 68999999999999999999999
Q ss_pred CCEEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHhhhcCCcEEEEeCCCCCchhHHHHHHHHHHHHcCCCCCCCCch
Q psy15137 618 PQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQQLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPPLSQE 697 (774)
Q Consensus 618 PdlIlVsaGfDa~~~Dp~plg~~~lt~~~y~~l~~~l~~la~grvv~vLEGGY~~~~l~~~~~a~v~~Llg~~~~~l~~~ 697 (774)
||+|++|||||++.||+ ++|.|.+||.+|.+++++..-+.++++++++||||++.+++.+ ...+..|+|.+++.+...
T Consensus 286 p~Lv~~sag~dA~lg~~-~~~~m~~tP~~~~~~~~~~~~~~r~~l~v~~e~gy~le~l~~~-~~~~~~llg~~~~~~~~~ 363 (797)
T KOG1343|consen 286 PDLLLVSAGFDALLGDG-PVGLMAQTPLGYAHRTSMHRPLGRGQLVVVLEGGYFLEKLAQS-QLVLNKLLGKPIEQLRQP 363 (797)
T ss_pred cceEEeeccccccccCc-ccCcccCCcccHHHHhccccccccCccceecchhHHHHHHHHh-hhhHHhhcCCCccccccC
Confidence 99999999999999995 4899999999999999984444459999999999999999988 888999999988776543
Q ss_pred hhccCCcHHHHHHHHHHHHHHhccCCCCcccccccC
Q psy15137 698 ELTRSPCLKAVETLQKTIAIQVSHWPVLKRSAHTIT 733 (774)
Q Consensus 698 ~~~~~~~~~a~~~l~~v~~~~~~~W~~l~~~~~~~~ 733 (774)
.+|+.++.+++..+.+++.+||+|+...-....
T Consensus 364 ---~~p~~~~~e~~~~~~~~~~~~w~~~~~~~~~~~ 396 (797)
T KOG1343|consen 364 ---GSPKEEAEEELQSVQAVQEDRWPCEGGSTSADS 396 (797)
T ss_pred ---CCchHHHHHHhhhhHHHhhcccccccCCcchhh
Confidence 238899999999999999999999988755433
No 11
>KOG1344|consensus
Probab=99.80 E-value=4.9e-20 Score=186.65 Aligned_cols=166 Identities=23% Similarity=0.285 Sum_probs=130.0
Q ss_pred hhhhhhhcccCCchH--------------HhHHHHHhcCCCCcCeeEEEeccCcCcchHHHHhhcCCceEEEEccccCCC
Q psy15137 497 FNINIAWSGALNPPM--------------GDAEYLSSDGREKTQYFPFRCWDVHHGNGTQQIFYSDKRVLYLSIHRHDDG 562 (774)
Q Consensus 497 f~~nia~~gg~hha~--------------~aa~yL~~~~~~~~~RVlIVD~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g 562 (774)
..++||++|||||+- .++..|..+.. +.|++|||+|+|+|||.+.-|.++ .|..+.+. ..
T Consensus 131 ~GWAINvGGGFHHcss~rGGGFC~yADItl~I~~lFer~~--isr~mivDLDAHQGNghErdf~~~-~vyi~d~y---nr 204 (324)
T KOG1344|consen 131 RGWAINVGGGFHHCSSSRGGGFCAYADITLAIFFLFERKA--ISRAMIVDLDAHQGNGHERDFEDD-AVYIFDMY---NR 204 (324)
T ss_pred cCeEEeecCccceeccCCCCceeehhhHHHHHHHHHhhhh--hhheEEEecccccCCccccccccc-eeehhhhh---hh
Confidence 456888889999871 35566665433 899999999999999999999888 66666654 34
Q ss_pred CCCCCCCCCCccCCCCCCcceeeeccCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCCcccc
Q psy15137 563 NFFPGTGGPIECGTGAGLGFNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKL 642 (774)
Q Consensus 563 ~fyPgtG~~~e~G~g~g~G~~vNvpl~~gl~~~~gD~~yl~af~~vl~pi~~~f~PdlIlVsaGfDa~~~Dp~plg~~~l 642 (774)
.+||+.-.+.+.= ..-|.+ ..++.|++|+..+.+.++..+.+|+||+|++.||.|..+|| |||++.+
T Consensus 205 ~iyp~D~~Ak~~I-------r~kVEl----~~gTeddeYLrkl~r~l~~sl~ef~Pd~VvYNAGTDiLeGD--pLG~L~I 271 (324)
T KOG1344|consen 205 FIYPRDHVAKESI-------RCKVEL----RNGTEDDEYLRKLKRCLMQSLAEFRPDMVVYNAGTDILEGD--PLGNLAI 271 (324)
T ss_pred hccchhHHHHHHh-------hheeee----ecCCCchHHHHHHHHHHHHHHHhhCCcEEEEeCCCccccCC--CCCCeee
Confidence 5889764332211 112333 23589999999999999999999999999999999999999 8999999
Q ss_pred CHHHHHHHHHHHhhhc---CCcEEEEeCCCCC---chhHHHHHHH
Q psy15137 643 SPACFGYMTQQLMTLA---DGKVVLALEGGYD---LPSMCDSAEA 681 (774)
Q Consensus 643 t~~~y~~l~~~l~~la---~grvv~vLEGGY~---~~~l~~~~~a 681 (774)
|+++.-...+.+...+ +.|+|+++.|||- ...++++...
T Consensus 272 Sp~Gi~~RDelVFr~~R~~~iPvvMltSGGY~K~sArvIaDSI~N 316 (324)
T KOG1344|consen 272 SPEGIIERDELVFRTFRALGIPVVMLTSGGYLKASARVIADSIVN 316 (324)
T ss_pred cccccchhhHHHHHHHHHcCCcEEEEecCceehhhhhhhHHHHHh
Confidence 9999998888887765 6899999999994 4445555544
No 12
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=96.59 E-value=0.0011 Score=50.18 Aligned_cols=43 Identities=19% Similarity=0.414 Sum_probs=39.3
Q ss_pred CCChhHHHHHHHHhhhcC-cceeEEEeccCCCCCCCCCCHHHHHHHHHHH
Q psy15137 145 TWTRAETDHLFDLCHRFD-LRFIVIHDRYDTNKFPTSRTIEDLKQRYYFV 193 (774)
Q Consensus 145 ~Wt~eETd~Lf~Lc~~fd-lr~~vI~DRy~~~~~~~~Rt~EdLK~RyY~v 193 (774)
.||.+|...|..++++|+ .+|-.|+..+. .||.+++|.||+.+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~------~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP------GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC------CCCHHHHHHHHHHh
Confidence 499999999999999999 99999999873 29999999999875
No 13
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=96.08 E-value=0.0025 Score=50.54 Aligned_cols=44 Identities=23% Similarity=0.483 Sum_probs=39.4
Q ss_pred CCChhHHHHHHHHhhhcCcc-eeEEEeccCCCCCCCCCCHHHHHHHHHHH
Q psy15137 145 TWTRAETDHLFDLCHRFDLR-FIVIHDRYDTNKFPTSRTIEDLKQRYYFV 193 (774)
Q Consensus 145 ~Wt~eETd~Lf~Lc~~fdlr-~~vI~DRy~~~~~~~~Rt~EdLK~RyY~v 193 (774)
.||.||.+.|.+++++|+-+ |-.|++++. ..||..+++.|||..
T Consensus 3 ~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~-----~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 3 PWTEEEDEKLLEAVKKYGKDNWKKIAKRMP-----GGRTAKQCRSRYQNL 47 (48)
T ss_dssp SS-HHHHHHHHHHHHHSTTTHHHHHHHHHS-----SSSTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcHHHHHHHHcC-----CCCCHHHHHHHHHhh
Confidence 69999999999999999999 999999984 249999999999963
No 14
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=96.06 E-value=0.0033 Score=48.24 Aligned_cols=45 Identities=22% Similarity=0.436 Sum_probs=40.7
Q ss_pred CCCChhHHHHHHHHhhhcC-cceeEEEeccCCCCCCCCCCHHHHHHHHHHHH
Q psy15137 144 PTWTRAETDHLFDLCHRFD-LRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVC 194 (774)
Q Consensus 144 ~~Wt~eETd~Lf~Lc~~fd-lr~~vI~DRy~~~~~~~~Rt~EdLK~RyY~v~ 194 (774)
..||.+|...|..++++|+ .+|-.|+..+. .||..+++.|||.+-
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~------~rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKELP------GRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC------CCCHHHHHHHHHHHc
Confidence 4699999999999999999 99999999873 499999999999864
No 15
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=95.17 E-value=0.0076 Score=49.69 Aligned_cols=41 Identities=22% Similarity=0.501 Sum_probs=35.6
Q ss_pred CChhHHHHHHHHhhhcCcceeEEEeccCCCCCCCCCCHHHHHHHHHH
Q psy15137 146 WTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYF 192 (774)
Q Consensus 146 Wt~eETd~Lf~Lc~~fdlr~~vI~DRy~~~~~~~~Rt~EdLK~RyY~ 192 (774)
||.||.+.|+.|++.|+-.|--|+..+. .||..+++.||+.
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~------~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLG------NRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHST------TS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHC------cCCHHHHHHHHHH
Confidence 9999999999999999999999998873 3999999999999
No 16
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=95.11 E-value=0.011 Score=44.63 Aligned_cols=43 Identities=19% Similarity=0.414 Sum_probs=37.5
Q ss_pred CCchhhhhHHHHHHhHcC-cceeEEEcccCCCCCCCCCCHHHHHhhhhhh
Q psy15137 397 TWTRAETDHLFDLCHRFD-LRFIVIHDRYDTNKFPTSRTIEDLKQRYYFV 445 (774)
Q Consensus 397 ~WtreETd~Lf~Lc~~fD-lR~ivI~DRy~~~~~~~~RtvEDLK~RYY~V 445 (774)
.||.+|...|..+++.|+ .+|-.|+..+. .||.+++++||+.+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~------~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP------GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC------CCCHHHHHHHHHHh
Confidence 499999999999999999 89988888743 39999999998764
No 17
>PLN03212 Transcription repressor MYB5; Provisional
Probab=94.78 E-value=0.051 Score=57.51 Aligned_cols=62 Identities=19% Similarity=0.237 Sum_probs=53.2
Q ss_pred HHHHhhcC----CCCCChhHHHHHHHHhhhcCcceeEEEeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhcC
Q psy15137 135 TEYLQELQ----SPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVCHTLAKMRG 202 (774)
Q Consensus 135 eeY~~~l~----~~~Wt~eETd~Lf~Lc~~fdlr~~vI~DRy~~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 202 (774)
|=|..||. ...||.||-+.|+++.+.|+=||..|+..+. .||--++|.|||++.++.+..+.
T Consensus 66 eRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnKWs~IAk~Lp------GRTDnqIKNRWns~LrK~l~r~~ 131 (249)
T PLN03212 66 LRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIP------GRTDNEIKNYWNTHLRKKLLRQG 131 (249)
T ss_pred HHHHHhhchhcccCCCChHHHHHHHHHHHhccccHHHHHhhcC------CCCHHHHHHHHHHHHhHHHHhcC
Confidence 33777775 3589999999999999999999999999873 49999999999999998876554
No 18
>PLN03091 hypothetical protein; Provisional
Probab=94.57 E-value=0.039 Score=62.43 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=54.0
Q ss_pred HHHHhhcCC----CCCChhHHHHHHHHhhhcCcceeEEEeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15137 135 TEYLQELQS----PTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVCHTLAKMRGT 203 (774)
Q Consensus 135 eeY~~~l~~----~~Wt~eETd~Lf~Lc~~fdlr~~vI~DRy~~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~~ 203 (774)
+=|..||.. ..||+||-..|++|.+.|+=||.-|+..+. .||--.+|.|||.+.+|.++.+.-
T Consensus 55 ERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnKWskIAk~LP------GRTDnqIKNRWnslLKKklr~~~I 121 (459)
T PLN03091 55 LRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLP------GRTDNEIKNLWNSCLKKKLRQRGI 121 (459)
T ss_pred HHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcchHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHcCC
Confidence 447777753 489999999999999999999999998762 499999999999999998886653
No 19
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=94.43 E-value=0.014 Score=46.22 Aligned_cols=44 Identities=23% Similarity=0.458 Sum_probs=38.2
Q ss_pred CCCchhhhhHHHHHHhHcCcc-eeEEEcccCCCCCCCCCCHHHHHhhhhh
Q psy15137 396 PTWTRAETDHLFDLCHRFDLR-FIVIHDRYDTNKFPTSRTIEDLKQRYYF 444 (774)
Q Consensus 396 ~~WtreETd~Lf~Lc~~fDlR-~ivI~DRy~~~~~~~~RtvEDLK~RYY~ 444 (774)
..||.+|+..|.++++.|+-+ |-.|+.++. ..||..+++.||+.
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~-----~~Rt~~qc~~~~~~ 46 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAKRMP-----GGRTAKQCRSRYQN 46 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHHHHS-----SSSTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHHHcC-----CCCCHHHHHHHHHh
Confidence 379999999999999999999 999999844 46999999999985
No 20
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=94.35 E-value=0.023 Score=43.48 Aligned_cols=45 Identities=22% Similarity=0.436 Sum_probs=39.1
Q ss_pred CCCchhhhhHHHHHHhHcC-cceeEEEcccCCCCCCCCCCHHHHHhhhhhhh
Q psy15137 396 PTWTRAETDHLFDLCHRFD-LRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVC 446 (774)
Q Consensus 396 ~~WtreETd~Lf~Lc~~fD-lR~ivI~DRy~~~~~~~~RtvEDLK~RYY~V~ 446 (774)
..||.+|+..|..++++|+ .+|-.|+..+. .||..++++||+..-
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~------~rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKELP------GRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC------CCCHHHHHHHHHHHc
Confidence 4799999999999999999 89988877643 599999999998653
No 21
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=92.91 E-value=0.041 Score=45.31 Aligned_cols=41 Identities=22% Similarity=0.501 Sum_probs=34.5
Q ss_pred CchhhhhHHHHHHhHcCcceeEEEcccCCCCCCCCCCHHHHHhhhhh
Q psy15137 398 WTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYF 444 (774)
Q Consensus 398 WtreETd~Lf~Lc~~fDlR~ivI~DRy~~~~~~~~RtvEDLK~RYY~ 444 (774)
||.+|.+.|+.+++.|+-.|--|+..+. .||..+++.||+.
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~------~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLG------NRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHST------TS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHC------cCCHHHHHHHHHH
Confidence 9999999999999999999988888742 5999999999998
No 22
>PLN03091 hypothetical protein; Provisional
Probab=91.50 E-value=0.18 Score=57.21 Aligned_cols=61 Identities=18% Similarity=0.298 Sum_probs=49.9
Q ss_pred hHHhhhcC----CCCCchhhhhHHHHHHhHcCcceeEEEcccCCCCCCCCCCHHHHHhhhhhhhHHHHhhc
Q psy15137 387 TEYLQELQ----SPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVCYTLAKMR 453 (774)
Q Consensus 387 ~eY~~~L~----~~~WtreETd~Lf~Lc~~fDlR~ivI~DRy~~~~~~~~RtvEDLK~RYY~V~~~L~~~r 453 (774)
+-|..||. ...||+||...|+++.+.|+=+|.-|+..+ + .||-..+|.|||.+.++-.+.+
T Consensus 55 ERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnKWskIAk~L-----P-GRTDnqIKNRWnslLKKklr~~ 119 (459)
T PLN03091 55 LRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQL-----P-GRTDNEIKNLWNSCLKKKLRQR 119 (459)
T ss_pred HHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcchHHHHHhc-----C-CCCHHHHHHHHHHHHHHHHHHc
Confidence 33555544 478999999999999999999999999863 2 5999999999999887765544
No 23
>PLN03212 Transcription repressor MYB5; Provisional
Probab=91.14 E-value=0.21 Score=53.05 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=49.3
Q ss_pred hHHhhhcC----CCCCchhhhhHHHHHHhHcCcceeEEEcccCCCCCCCCCCHHHHHhhhhhhhHHHHhh
Q psy15137 387 TEYLQELQ----SPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVCYTLAKM 452 (774)
Q Consensus 387 ~eY~~~L~----~~~WtreETd~Lf~Lc~~fDlR~ivI~DRy~~~~~~~~RtvEDLK~RYY~V~~~L~~~ 452 (774)
+-|.+||. ...||+||.+.|+++.+.|+-+|..|+..+ | .||-..+|.|||...++....
T Consensus 66 eRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnKWs~IAk~L-----p-GRTDnqIKNRWns~LrK~l~r 129 (249)
T PLN03212 66 LRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRI-----P-GRTDNEIKNYWNTHLRKKLLR 129 (249)
T ss_pred HHHHHhhchhcccCCCChHHHHHHHHHHHhccccHHHHHhhc-----C-CCCHHHHHHHHHHHHhHHHHh
Confidence 34556654 579999999999999999999999999873 2 599999999999888665443
No 24
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=80.75 E-value=15 Score=43.80 Aligned_cols=124 Identities=20% Similarity=0.272 Sum_probs=75.7
Q ss_pred EEEeccCcCcchHHHHhhcCCceEEEEccccCCCCCCCCCCCCCccCCCCCCcceeeeccCCCCCCCCCcHHHHHHHHHH
Q psy15137 529 PFRCWDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGALNPPMGDAEYLAAFRTI 608 (774)
Q Consensus 529 lIVD~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~fyPgtG~~~e~G~g~g~G~~vNvpl~~gl~~~~gD~~yl~af~~v 608 (774)
..||+|.|--|++..+|-..|--+-+|.-+ ||+|+.....----|-+|++ | ++...-|-+.
T Consensus 338 ILvDl~g~T~d~r~~v~A~RpAPiqvswlG------y~aT~g~p~~DY~I~D~y~v--P-------p~ae~yysEk---- 398 (620)
T COG3914 338 ILVDLDGHTVDTRCQVFAHRPAPIQVSWLG------YPATTGSPNMDYFISDPYTV--P-------PTAEEYYSEK---- 398 (620)
T ss_pred EEEeccCceeccchhhhhcCCCceEEeecc------cccccCCCcceEEeeCceec--C-------chHHHHHHHH----
Confidence 468999999999999999999999999774 67775421111001112221 1 1222333333
Q ss_pred HHHHHHhcCC--------------------CEEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHhhhcCCcEEEEeCC
Q psy15137 609 VMPVAKEFDP--------------------QIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQQLMTLADGKVVLALEG 668 (774)
Q Consensus 609 l~pi~~~f~P--------------------dlIlVsaGfDa~~~Dp~plg~~~lt~~~y~~l~~~l~~la~grvv~vLEG 668 (774)
|..+-.-|+| |.+|..|| -+.++.+++.|..-.+.|... .+.+++++.|
T Consensus 399 l~RLp~cy~p~d~~~~v~p~~sR~~lglp~~avVf~c~----------~n~~K~~pev~~~wmqIL~~v-P~Svl~L~~~ 467 (620)
T COG3914 399 LWRLPQCYQPVDGFEPVTPPPSRAQLGLPEDAVVFCCF----------NNYFKITPEVFALWMQILSAV-PNSVLLLKAG 467 (620)
T ss_pred HHhcccccCCCCCcccCCCCcchhhcCCCCCeEEEEec----------CCcccCCHHHHHHHHHHHHhC-CCcEEEEecC
Confidence 3333234433 45666655 245678889888777777665 5678999999
Q ss_pred CCCchhHHHHHHHHHHHHc
Q psy15137 669 GYDLPSMCDSAEACVRALL 687 (774)
Q Consensus 669 GY~~~~l~~~~~a~v~~Ll 687 (774)
|-+. .+.+.++.+.
T Consensus 468 ~~~~-----~~~~~l~~la 481 (620)
T COG3914 468 GDDA-----EINARLRDLA 481 (620)
T ss_pred CCcH-----HHHHHHHHHH
Confidence 9553 3445555554
No 25
>PF09757 Arb2: Arb2 domain; InterPro: IPR019154 The fission yeast Argonaute siRNA chaperone (ARC) complex contains the Argonaute protein Ago1 and two previously uncharacterised proteins, Arb1 and Arb2, both of which are required for histone H3 Lys9 (H3-K9) methylation, heterochromatin assembly and siRNA generation []. This entry represents a region found in both Arb2 and the Hda1 protein. ; PDB: 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G.
Probab=51.33 E-value=11 Score=38.12 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=20.8
Q ss_pred CCcHHHHHHHHHHHHHHhccCCCCcc
Q psy15137 702 SPCLKAVETLQKTIAIQVSHWPVLKR 727 (774)
Q Consensus 702 ~~~~~a~~~l~~v~~~~~~~W~~l~~ 727 (774)
.++..|.+++++|+.+|++||+||..
T Consensus 9 ~~~~~a~~~v~~v~~~qs~yw~~l~~ 34 (178)
T PF09757_consen 9 VASPSAFETVKNVRRIQSKYWKCLNP 34 (178)
T ss_dssp ---HHHHHHHHHHHHHHTTT-GGGTS
T ss_pred CCCHHHeeeHHHHHHHHHHHHHHhcC
Confidence 35789999999999999999999965
No 26
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=50.61 E-value=1.6e+02 Score=30.02 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHhhhcCCcEEEEeCCCCCc
Q psy15137 603 AAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQQLMTLADGKVVLALEGGYDL 672 (774)
Q Consensus 603 ~af~~vl~pi~~~f~PdlIlVsaGfDa~~~Dp~plg~~~lt~~~y~~l~~~l~~la~grvv~vLEGGY~~ 672 (774)
..+...+..+..+|++|+|||=++--... ..+..+...++ .+++|++-+...
T Consensus 134 ~~l~~~l~~l~~~y~~D~IiiD~pp~~~~-----------------~~~~~l~~~aD-~viiV~~~~~~~ 185 (207)
T TIGR03018 134 QRMRSLLHELARRYPDRIIIIDTPPLLVF-----------------SEARALARLVG-QIVLVVEEGRTT 185 (207)
T ss_pred HHHHHHHHHHHhhCCCCEEEEECCCCcch-----------------hHHHHHHHhCC-EEEEEEECCCCC
Confidence 34666677777888889999955521110 11333445555 467777777653
No 27
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=48.65 E-value=4.9 Score=35.30 Aligned_cols=58 Identities=24% Similarity=0.464 Sum_probs=40.1
Q ss_pred CCCChhHHHHHHHHhhh--cCcce------------eEEEeccCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCC
Q psy15137 144 PTWTRAETDHLFDLCHR--FDLRF------------IVIHDRYDTNKFPTSRTIEDLKQRYYFVCHTLAKMRGT 203 (774)
Q Consensus 144 ~~Wt~eETd~Lf~Lc~~--fdlr~------------~vI~DRy~~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~~ 203 (774)
..||.+||..|+++..+ ++.+| -.|++.....++ .||.++++.|+=.+.+.+-+.+..
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~--~rt~~qc~~Kw~~L~~~Yk~~k~~ 73 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGY--NRTPEQCRNKWKNLKKKYKKIKDR 73 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHCSSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHHHHHHHhc
Confidence 36999999999999999 55543 334444332222 499999999999999999988775
No 28
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=47.60 E-value=1.7e+02 Score=31.05 Aligned_cols=15 Identities=0% Similarity=-0.263 Sum_probs=12.5
Q ss_pred cCeeEEEeccCcCcc
Q psy15137 525 TQYFPFRCWDVHHGN 539 (774)
Q Consensus 525 ~~RVlIVD~DvHHGn 539 (774)
.+||++||+|.+..+
T Consensus 132 g~~VllID~D~~~~~ 146 (274)
T TIGR03029 132 GEKTLLIDANLRDPV 146 (274)
T ss_pred CCeEEEEeCCCCCcc
Confidence 368999999998755
No 29
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=45.03 E-value=13 Score=34.77 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=23.0
Q ss_pred HHHHHcC--CCCCChHHHHHHHHHHHHHH
Q psy15137 309 QTLIDLG--LNPIPTEEIVTHYNELRSDM 335 (774)
Q Consensus 309 ~~L~elg--~~p~pT~~ic~~~n~LR~di 335 (774)
+.|.+.| +..|+|.+.|..||-|.++.
T Consensus 73 ~~l~~~gi~vE~m~T~~AcrTyN~L~~Eg 101 (109)
T cd05560 73 APLLARGIGVEVMDTQAACRTYNILMGEG 101 (109)
T ss_pred HHHHHcCCeEEEECHHHHHHHHHHHHhCC
Confidence 6788888 55699999999999998753
No 30
>PHA00649 hypothetical protein
Probab=44.03 E-value=43 Score=29.26 Aligned_cols=38 Identities=24% Similarity=0.461 Sum_probs=30.8
Q ss_pred hhhh-HHHHHcCCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15137 305 TTAF-QTLIDLGLNP-IPTEEIVTHYNELRSDMVLLYELKQALDN 347 (774)
Q Consensus 305 ~k~i-~~L~elg~~p-~pT~~ic~~~n~LR~di~~L~elrka~~~ 347 (774)
-|++ |+|..||+.- .|-+ -+++|.|+.-+-.|||+.++
T Consensus 16 ~rAV~~~~~~LGVD~~~P~~-----VEEFr~D~~~~Rr~RKA~D~ 55 (83)
T PHA00649 16 DRAVKKVFAILGVDVDVPEQ-----VEEFREDLRFGRRMRKAADH 55 (83)
T ss_pred HHHHHHHHHHHcCCCCCHHH-----HHHHHHHHHHHHHHHHHhhc
Confidence 4678 9999999554 5543 28999999999999999985
No 31
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=42.53 E-value=15 Score=31.74 Aligned_cols=51 Identities=16% Similarity=0.284 Sum_probs=31.0
Q ss_pred CCCCChhHHHHHHHHhhhc-----------------CcceeEEEeccCCCCCCCCCCHHHHHHHHHHHH
Q psy15137 143 SPTWTRAETDHLFDLCHRF-----------------DLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVC 194 (774)
Q Consensus 143 ~~~Wt~eETd~Lf~Lc~~f-----------------dlr~~vI~DRy~~~~~~~~Rt~EdLK~RyY~v~ 194 (774)
.+.||.+|+.-|.+|++++ +--|--|+.+|+...++ .||.++||..|=.+.
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~-~Rs~~~lkkkW~nlk 69 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPG-KRSWKQLKKKWKNLK 69 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHH
Confidence 4679999999999998875 11244444444433333 466666666554443
No 32
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=41.44 E-value=18 Score=33.83 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.1
Q ss_pred HHHHHcC--CCCCChHHHHHHHHHHHHHH
Q psy15137 309 QTLIDLG--LNPIPTEEIVTHYNELRSDM 335 (774)
Q Consensus 309 ~~L~elg--~~p~pT~~ic~~~n~LR~di 335 (774)
+.|.+.| +..|+|.+.|..||-|.++.
T Consensus 73 ~~l~~~gI~vE~m~T~aAcrTyNiL~~Eg 101 (109)
T cd00248 73 AALRAAGIGVEVMSTGAACRTYNVLLSEG 101 (109)
T ss_pred HHHHHcCCeEEEeCcHHHHHHHHHHHhCC
Confidence 6788898 55799999999999998753
No 33
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=40.29 E-value=15 Score=34.21 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=22.6
Q ss_pred HHHHHcC--CCCCChHHHHHHHHHHHHHH
Q psy15137 309 QTLIDLG--LNPIPTEEIVTHYNELRSDM 335 (774)
Q Consensus 309 ~~L~elg--~~p~pT~~ic~~~n~LR~di 335 (774)
..|++.| +--|+|.+.|..||-|.++.
T Consensus 74 ~~l~~~GI~ve~m~T~~Ac~tyN~L~~Eg 102 (110)
T PF04430_consen 74 EYLRKKGIGVEVMDTPAACRTYNILASEG 102 (110)
T ss_dssp HHHHTTT-EEEEE-HHHHHHHHHHHHHTT
T ss_pred HHHHHcCCeEEEECHHHHHHHHHHHHhCC
Confidence 7899999 45699999999999998874
No 34
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=39.03 E-value=1.3e+02 Score=29.84 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=28.5
Q ss_pred eeeccCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCEEEEecCCCC
Q psy15137 584 INIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDA 629 (774)
Q Consensus 584 vNvpl~~gl~~~~gD~~yl~af~~vl~pi~~~f~PdlIlVsaGfDa 629 (774)
+|...+ |.+-.+++..|...+.+.+..++||+|+|..|..=
T Consensus 41 ~N~gi~-----G~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G~ND 81 (193)
T cd01835 41 YNLGVR-----GDGSEDVAARWRAEWSRRGELNVPNRLVLSVGLND 81 (193)
T ss_pred EeecCC-----CCCHHHHHHHHHHHHHhhcccCCCCEEEEEecCcc
Confidence 366543 24455677777776665555589999999999863
No 35
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=38.85 E-value=83 Score=35.48 Aligned_cols=64 Identities=16% Similarity=0.282 Sum_probs=41.4
Q ss_pred HHHHHHHhc--CCCEEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHhhhcCCcEEEEeCCCCCchhHHHHHHHHHHH
Q psy15137 608 IVMPVAKEF--DPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQQLMTLADGKVVLALEGGYDLPSMCDSAEACVRA 685 (774)
Q Consensus 608 vl~pi~~~f--~PdlIlVsaGfDa~~~Dp~plg~~~lt~~~y~~l~~~l~~la~grvv~vLEGGY~~~~l~~~~~a~v~~ 685 (774)
.|.-++..+ +||.||+..|.- ..+ .....+.+.+..++ | |.++.|.+-..+++.++. +.
T Consensus 282 ~Ia~l~~~l~g~pD~IV~gGGI~--e~~-----------~l~~~I~~~l~~~a--~-v~~~pg~~e~~ala~ga~---rv 342 (351)
T TIGR02707 282 EIGKMAVVLKGKVDAIVLTGGLA--YSK-----------YFVSEIIKRVSFIA--P-VLVYPGEDEMEALAEGAL---RV 342 (351)
T ss_pred HHHHHHHHhCCCCCEEEEcchhh--cCH-----------HHHHHHHHHHHhhC--C-EEEeCCcHHHHHHHHhHH---HH
Confidence 455666778 899999988853 222 22345555555555 3 566799888888877664 55
Q ss_pred HcCCC
Q psy15137 686 LLGDA 690 (774)
Q Consensus 686 Llg~~ 690 (774)
|.|.+
T Consensus 343 ~~~~e 347 (351)
T TIGR02707 343 LRGEE 347 (351)
T ss_pred hcCCc
Confidence 55543
No 36
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=35.52 E-value=26 Score=33.41 Aligned_cols=26 Identities=42% Similarity=0.615 Sum_probs=22.4
Q ss_pred HHHHHcCC--CCCChHHHHHHHHHHHHH
Q psy15137 309 QTLIDLGL--NPIPTEEIVTHYNELRSD 334 (774)
Q Consensus 309 ~~L~elg~--~p~pT~~ic~~~n~LR~d 334 (774)
+.|.+.|+ -.|+|.+.|..||.|.++
T Consensus 80 ~~l~~~Gi~ve~m~T~aAcrTYN~L~~E 107 (117)
T cd05126 80 EKLEKRGVEVLVLPTEEAVKRYNELAGK 107 (117)
T ss_pred HHHHhcCCEEEEcChHHHHHHHHHHHhC
Confidence 68899984 459999999999999875
No 37
>PRK11519 tyrosine kinase; Provisional
Probab=34.30 E-value=2.3e+02 Score=35.08 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=15.1
Q ss_pred cCeeEEEeccCcCcchHHHHh
Q psy15137 525 TQYFPFRCWDVHHGNGTQQIF 545 (774)
Q Consensus 525 ~~RVlIVD~DvHHGnGTq~iF 545 (774)
.+||++||.|.++|+ ....|
T Consensus 555 g~rvLlID~Dlr~~~-~~~~~ 574 (719)
T PRK11519 555 NKRVLLIDCDMRKGY-THELL 574 (719)
T ss_pred CCcEEEEeCCCCCCc-HHHHh
Confidence 478999999999875 33444
No 38
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=32.29 E-value=1.6e+02 Score=34.39 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCC-CCCCCCCCCCCccccCHHHHHHHHHHHhhh----cCCcEEEEeCCCCCchhHHH
Q psy15137 603 AAFRTIVMPVAKEFDPQIVLVSAGF-DAAAGHPPPLGGYKLSPACFGYMTQQLMTL----ADGKVVLALEGGYDLPSMCD 677 (774)
Q Consensus 603 ~af~~vl~pi~~~f~PdlIlVsaGf-Da~~~Dp~plg~~~lt~~~y~~l~~~l~~l----a~grvv~vLEGGY~~~~l~~ 677 (774)
..+.+.|.-+.+.|+|++|+|.++. ....|| ++..+.+.+..- .+.||+.+--+||... ...
T Consensus 78 ~~L~~aI~~~~~~~~P~~I~V~ttC~~eiIGD------------Di~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~-~~~ 144 (455)
T PRK14476 78 ENVEEAILNICKKAKPKIIGLCTTGLTETRGD------------DVAGALKEIRARHPELADTPIVYVSTPDFKGA-LED 144 (455)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCcchHhhhhc------------cHHHHHHHHHhhccccCCCeEEEecCCCCCCc-HHH
Confidence 3445556667788999988766554 666776 233444444332 2568999999999653 344
Q ss_pred HHHHHHHHH
Q psy15137 678 SAEACVRAL 686 (774)
Q Consensus 678 ~~~a~v~~L 686 (774)
+....+.+|
T Consensus 145 G~~~a~~al 153 (455)
T PRK14476 145 GWAAAVEAI 153 (455)
T ss_pred HHHHHHHHH
Confidence 444444443
No 39
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=31.31 E-value=1.6e+02 Score=33.15 Aligned_cols=46 Identities=24% Similarity=0.359 Sum_probs=30.3
Q ss_pred CCEEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHhh----hcCCcEEEEeCCCCC
Q psy15137 618 PQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQQLMT----LADGKVVLALEGGYD 671 (774)
Q Consensus 618 PdlIlVsaGfDa~~~Dp~plg~~~lt~~~y~~l~~~l~~----la~grvv~vLEGGY~ 671 (774)
|-++|+-|-|-+|.+- .|+ ..+.-+.+++-. +.--|-|.+|+|||.
T Consensus 304 p~aLifHCEfSshRaP--~LA------~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk 353 (427)
T COG5105 304 PRALIFHCEFSSHRAP--RLA------QHLRNMDRMKNPDHYPLLTYPEVYILEGGYK 353 (427)
T ss_pred ceeEEEEeecccccch--hHH------HHHhhhhhhcCcccCcccccceEEEecCcHH
Confidence 8899999999999983 232 223344444332 112467899999994
No 40
>KOG0048|consensus
Probab=30.78 E-value=27 Score=37.07 Aligned_cols=44 Identities=25% Similarity=0.471 Sum_probs=37.9
Q ss_pred cCCCCCchhhhhHHHHHHhHcCcceeEEEcccCCCCCCCCCCHHHHHhhh
Q psy15137 393 LQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRY 442 (774)
Q Consensus 393 L~~~~WtreETd~Lf~Lc~~fDlR~ivI~DRy~~~~~~~~RtvEDLK~RY 442 (774)
++-..||.||.+-++.|-..++-||-.|+-+ .| .||-.++|.-.
T Consensus 60 ikrg~fT~eEe~~Ii~lH~~~GNrWs~IA~~-----LP-GRTDNeIKN~W 103 (238)
T KOG0048|consen 60 LKRGNFSDEEEDLIIKLHALLGNRWSLIAGR-----LP-GRTDNEVKNHW 103 (238)
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcHHHHHHhh-----CC-CcCHHHHHHHH
Confidence 3457999999999999999999999999987 34 59999999443
No 41
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=30.65 E-value=31 Score=32.78 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=22.4
Q ss_pred HHHHHcC--CCCCChHHHHHHHHHHHHH
Q psy15137 309 QTLIDLG--LNPIPTEEIVTHYNELRSD 334 (774)
Q Consensus 309 ~~L~elg--~~p~pT~~ic~~~n~LR~d 334 (774)
..|.+.| +..|+|.+.|..||.|.++
T Consensus 75 ~~l~~~gi~vevm~T~~AcrtyN~L~~E 102 (114)
T cd05125 75 KYFKKLGIAVEVVDTRNACATFNFLAEE 102 (114)
T ss_pred HHHHHcCCEEEEECHHHHHHHHHHHHhC
Confidence 6788998 5569999999999999865
No 42
>KOG0048|consensus
Probab=30.13 E-value=26 Score=37.12 Aligned_cols=51 Identities=22% Similarity=0.293 Sum_probs=40.3
Q ss_pred CCCCChhHHHHHHHHhhhcCcceeEEEeccCCCCCCCCCCHHHHHHHHHHH-HHHHHh
Q psy15137 143 SPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFV-CHTLAK 199 (774)
Q Consensus 143 ~~~Wt~eETd~Lf~Lc~~fdlr~~vI~DRy~~~~~~~~Rt~EdLK~RyY~v-~~~l~~ 199 (774)
-..||.||.+-++.|-..++-||-+|+=+.. +||--++|--.=+- .|++..
T Consensus 62 rg~fT~eEe~~Ii~lH~~~GNrWs~IA~~LP------GRTDNeIKN~Wnt~lkkkl~~ 113 (238)
T KOG0048|consen 62 RGNFSDEEEDLIIKLHALLGNRWSLIAGRLP------GRTDNEVKNHWNTHLKKKLLK 113 (238)
T ss_pred CCCCCHHHHHHHHHHHHHHCcHHHHHHhhCC------CcCHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999998873 49999997665333 344433
No 43
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=28.02 E-value=4.5e+02 Score=32.54 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=14.4
Q ss_pred cCeeEEEeccCcCcchHH
Q psy15137 525 TQYFPFRCWDVHHGNGTQ 542 (774)
Q Consensus 525 ~~RVlIVD~DvHHGnGTq 542 (774)
.+||++||.|.++|.-+.
T Consensus 560 G~rVLlID~D~r~~~l~~ 577 (726)
T PRK09841 560 DQKVLFIDADLRRGYSHN 577 (726)
T ss_pred CCeEEEEeCCCCCCcHHH
Confidence 478999999999886443
No 44
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=27.23 E-value=2.4e+02 Score=25.68 Aligned_cols=45 Identities=13% Similarity=0.221 Sum_probs=24.1
Q ss_pred cCCCEEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHhhhc-CCcEEEEeCCCCC
Q psy15137 616 FDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQQLMTLA-DGKVVLALEGGYD 671 (774)
Q Consensus 616 f~PdlIlVsaGfDa~~~Dp~plg~~~lt~~~y~~l~~~l~~la-~grvv~vLEGGY~ 671 (774)
.+.+.||+.|+..... +.....++...+.... +..-+.+|+||++
T Consensus 64 ~~~~~iv~~C~~~g~r-----------s~~a~~~l~~~l~~~G~~~~~v~~l~GG~~ 109 (113)
T cd01443 64 AGVKLAIFYCGSSQGR-----------GPRAARWFADYLRKVGESLPKSYILTGGIK 109 (113)
T ss_pred cCCCEEEEECCCCCcc-----------cHHHHHHHHHHHhccCCCCCeEEEECChhh
Confidence 4566777777643222 2233445544443332 1134677899985
No 45
>PF08963 DUF1878: Protein of unknown function (DUF1878); InterPro: IPR015058 This family consist of hypothetical bacterial proteins. ; PDB: 1SED_B.
Probab=26.37 E-value=31 Score=32.85 Aligned_cols=26 Identities=15% Similarity=0.434 Sum_probs=18.3
Q ss_pred HHhhcCCCCCChhHHHHHHHHhhhcC
Q psy15137 137 YLQELQSPTWTRAETDHLFDLCHRFD 162 (774)
Q Consensus 137 Y~~~l~~~~Wt~eETd~Lf~Lc~~fd 162 (774)
|...+-..+||++|++-.++||++++
T Consensus 29 Fy~LvI~~~Ltkeevee~~~lce~l~ 54 (113)
T PF08963_consen 29 FYALVIRKGLTKEEVEEFLRLCEELS 54 (113)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 33444456899999999999999864
No 46
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=26.26 E-value=6.9e+02 Score=26.25 Aligned_cols=26 Identities=12% Similarity=0.264 Sum_probs=21.4
Q ss_pred CCCchhhhhHHHHHHhHcCcceeEEE
Q psy15137 396 PTWTRAETDHLFDLCHRFDLRFIVIH 421 (774)
Q Consensus 396 ~~WtreETd~Lf~Lc~~fDlR~ivI~ 421 (774)
++++....+.|-+++++++|..+.+.
T Consensus 42 ~~~~~~~~~~l~~~~~~~gl~v~s~~ 67 (275)
T PRK09856 42 PDLKAGGIKQIKALAQTYQMPIIGYT 67 (275)
T ss_pred cccCchHHHHHHHHHHHcCCeEEEec
Confidence 35666788999999999999987764
No 47
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=25.73 E-value=26 Score=30.17 Aligned_cols=19 Identities=21% Similarity=0.557 Sum_probs=17.1
Q ss_pred CCCCchhhhhHHHHHHhHc
Q psy15137 395 SPTWTRAETDHLFDLCHRF 413 (774)
Q Consensus 395 ~~~WtreETd~Lf~Lc~~f 413 (774)
.+.||.+|..-|+++++.+
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~ 20 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKH 20 (78)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999987
No 48
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=25.05 E-value=2.1e+02 Score=32.27 Aligned_cols=71 Identities=11% Similarity=0.073 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecC-CCCCCCCCCCCCccccCHHHHHHHHHHHhhhcCCcEEEEeCCCCCchhHHHHHHH
Q psy15137 603 AAFRTIVMPVAKEFDPQIVLVSAG-FDAAAGHPPPLGGYKLSPACFGYMTQQLMTLADGKVVLALEGGYDLPSMCDSAEA 681 (774)
Q Consensus 603 ~af~~vl~pi~~~f~PdlIlVsaG-fDa~~~Dp~plg~~~lt~~~y~~l~~~l~~la~grvv~vLEGGY~~~~l~~~~~a 681 (774)
..+.+.|.-+...|+|++|+|..+ .....|| ++..+.+.+..-.+.+++.+--.||...+...+...
T Consensus 73 ~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGd------------Di~~v~~~~~~~~~~~vi~v~t~gf~g~~~~~G~~~ 140 (406)
T cd01967 73 KKLKKAIKEAYERFPPKAIFVYSTCPTGLIGD------------DIEAVAKEASKELGIPVIPVNCEGFRGVSQSLGHHI 140 (406)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCchhhhcc------------CHHHHHHHHHHhhCCCEEEEeCCCeeCCcccHHHHH
Confidence 355666777888999997766554 3444554 344555555443357899998888876344344443
Q ss_pred HHHH
Q psy15137 682 CVRA 685 (774)
Q Consensus 682 ~v~~ 685 (774)
.+++
T Consensus 141 a~~a 144 (406)
T cd01967 141 ANDA 144 (406)
T ss_pred HHHH
Confidence 3333
No 49
>PTZ00063 histone deacetylase; Provisional
Probab=24.47 E-value=20 Score=41.64 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=23.1
Q ss_pred hhhhHHHHHHhHcCcceeEEEcccCCCCCCCCCCHHHHHhhhhhhh
Q psy15137 401 AETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVC 446 (774)
Q Consensus 401 eETd~Lf~Lc~~fDlR~ivI~DRy~~~~~~~~RtvEDLK~RYY~V~ 446 (774)
+-...+.++.+.++|-- +.+.. .|.+.|.|+|. ++|+-.
T Consensus 28 ~Rl~~~~~ll~~~gl~~-----~~~~~-~p~~At~eeL~-~vHs~~ 66 (436)
T PTZ00063 28 QRIRMAHALILSYDLYK-----HMEIY-RPHKSVEPELV-LFHDEE 66 (436)
T ss_pred HHHHHHHHHHHhCCCcc-----cCeEe-cCCCCCHHHHH-HhCCHH
Confidence 34556777888887721 11111 14567888886 887655
No 50
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=24.39 E-value=51 Score=37.57 Aligned_cols=26 Identities=38% Similarity=0.790 Sum_probs=22.8
Q ss_pred CCChhHHHHHHHHhhhcCcceeEEEecc
Q psy15137 145 TWTRAETDHLFDLCHRFDLRFIVIHDRY 172 (774)
Q Consensus 145 ~Wt~eETd~Lf~Lc~~fdlr~~vI~DRy 172 (774)
-||+||-..|-+||++||+| ||.|=-
T Consensus 174 vwt~eeL~~i~elc~kh~v~--VISDEI 199 (388)
T COG1168 174 VWTKEELRKIAELCLRHGVR--VISDEI 199 (388)
T ss_pred cccHHHHHHHHHHHHHcCCE--EEeecc
Confidence 49999999999999999997 667753
No 51
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=23.70 E-value=69 Score=33.03 Aligned_cols=14 Identities=14% Similarity=-0.083 Sum_probs=12.7
Q ss_pred CeeEEEeccCcCcc
Q psy15137 526 QYFPFRCWDVHHGN 539 (774)
Q Consensus 526 ~RVlIVD~DvHHGn 539 (774)
.||++||+|.++||
T Consensus 30 ~~VlliD~D~~~~~ 43 (251)
T TIGR01969 30 KKVLALDADITMAN 43 (251)
T ss_pred CeEEEEeCCCCCcc
Confidence 68999999998887
No 52
>PHA02550 32 single-stranded DNA binding protein; Provisional
Probab=23.41 E-value=89 Score=34.41 Aligned_cols=65 Identities=23% Similarity=0.454 Sum_probs=49.3
Q ss_pred CCCCCccccccccccccCHHHHHhhcCCCCCChhHHHHHHHHhhhcCcceeEEEeccCCCCCCCCCCHHHHHHHHHHHHH
Q psy15137 116 KEYPFARFNKQVSIPTYTDTEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVCH 195 (774)
Q Consensus 116 ~~y~FakfN~~~~i~~yt~eeY~~~l~~~~Wt~eETd~Lf~Lc~~fdlr~~vI~DRy~~~~~~~~Rt~EdLK~RyY~v~~ 195 (774)
..|-=.+|-....|+.+.||+|.+.| |. +++||+=++..|-| .|.|+|+.||=.|.-
T Consensus 186 ~NYD~s~f~~~s~l~~i~De~~~~~i----we-----------~~hdL~e~~a~~~F--------Ksye~L~~rf~kVmG 242 (304)
T PHA02550 186 PNYDDSKFAAPSPLPNIDDEAFQKEI----WE-----------QMHDLSEFVAPDKF--------KSYEELETKFNKVMG 242 (304)
T ss_pred CCcccccccccccCCCCCcHHHHHHH----HH-----------hcccHHHHhCHHhc--------CCHHHHHHHHHHHhc
Confidence 45666788788889999999998766 22 56777777777777 789999999999986
Q ss_pred HHHhhcCC
Q psy15137 196 TLAKMRGT 203 (774)
Q Consensus 196 ~l~~~r~~ 203 (774)
.=+..++.
T Consensus 243 ~s~~~~a~ 250 (304)
T PHA02550 243 TSAVGGAA 250 (304)
T ss_pred cccccccc
Confidence 44444443
No 53
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=23.29 E-value=1.9e+02 Score=27.94 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=24.7
Q ss_pred HHHHhcCCCEEEEecCC-CCCCCCCCCCCccccCHHHHHHHHHHHhhhc
Q psy15137 611 PVAKEFDPQIVLVSAGF-DAAAGHPPPLGGYKLSPACFGYMTQQLMTLA 658 (774)
Q Consensus 611 pi~~~f~PdlIlVsaGf-Da~~~Dp~plg~~~lt~~~y~~l~~~l~~la 658 (774)
..+..++||+|+++.|. |...+. + ..-..+.|..+.+.+....
T Consensus 44 ~~~~~~~p~~vvi~~G~ND~~~~~--~---~~~~~~~~~~lv~~i~~~~ 87 (171)
T cd04502 44 RLVLPYQPRRVVLYAGDNDLASGR--T---PEEVLRDFRELVNRIRAKL 87 (171)
T ss_pred hhhccCCCCEEEEEEecCcccCCC--C---HHHHHHHHHHHHHHHHHHC
Confidence 34457899999999998 433221 1 1112334556666665543
No 54
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=22.92 E-value=2.6e+02 Score=32.14 Aligned_cols=73 Identities=12% Similarity=0.173 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCC-CCCCCCCCCCCccccCHHHHHHHHHHHhhhcCCcEEEEeCCCCCchhHHHHHHH
Q psy15137 603 AAFRTIVMPVAKEFDPQIVLVSAGF-DAAAGHPPPLGGYKLSPACFGYMTQQLMTLADGKVVLALEGGYDLPSMCDSAEA 681 (774)
Q Consensus 603 ~af~~vl~pi~~~f~PdlIlVsaGf-Da~~~Dp~plg~~~lt~~~y~~l~~~l~~la~grvv~vLEGGY~~~~l~~~~~a 681 (774)
..+.+.|.-+.+.|+|++|+|..+. ....|| ++..+.+.+..-.+.||+.|--.||...+...+...
T Consensus 75 ~kL~~aI~~~~~~~~P~~I~V~ttC~~~iIGd------------Di~~v~~~~~~~~~~pvi~v~t~gf~g~~~~~G~~~ 142 (426)
T cd01972 75 KKLEDTIKEAYSRYKPKAIFVATSCATGIIGD------------DVESVVEELEDEIGIPVVALHCEGFKGKHWRSGFDA 142 (426)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCChHHHhcc------------CHHHHHHHHHHhhCCCEEEEeCCccCCccHhHHHHH
Confidence 4566667778889999987776553 333444 344555555543467899999999977444444444
Q ss_pred HHHHHc
Q psy15137 682 CVRALL 687 (774)
Q Consensus 682 ~v~~Ll 687 (774)
.+.+++
T Consensus 143 a~~al~ 148 (426)
T cd01972 143 AFHGIL 148 (426)
T ss_pred HHHHHH
Confidence 444443
No 55
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.75 E-value=2.1e+02 Score=28.09 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=23.7
Q ss_pred eeeccCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCEEEEecCCC
Q psy15137 584 INIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFD 628 (774)
Q Consensus 584 vNvpl~~gl~~~~gD~~yl~af~~vl~pi~~~f~PdlIlVsaGfD 628 (774)
+|+..++ ..-.+++..+.. +..++||+|+|..|..
T Consensus 44 ~n~g~~G-----~t~~~~~~~l~~-----~~~~~pd~Vii~~G~N 78 (191)
T cd01836 44 RLFAKTG-----ATSADLLRQLAP-----LPETRFDVAVISIGVN 78 (191)
T ss_pred EEEecCC-----cCHHHHHHHHHh-----cccCCCCEEEEEeccc
Confidence 4666532 344566665544 4578999999999984
No 56
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=22.73 E-value=3.4e+02 Score=31.22 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCC-CCCCCCCCccccCHHHHHHHHHHHhhh----cCCcEEEEeCCCCCchhHHHH
Q psy15137 604 AFRTIVMPVAKEFDPQIVLVSAGFDAA-AGHPPPLGGYKLSPACFGYMTQQLMTL----ADGKVVLALEGGYDLPSMCDS 678 (774)
Q Consensus 604 af~~vl~pi~~~f~PdlIlVsaGfDa~-~~Dp~plg~~~lt~~~y~~l~~~l~~l----a~grvv~vLEGGY~~~~l~~~ 678 (774)
.+.+.|.-+.+.|+|++|+|..+.=+. .|| +...+.+.+..- .+.|++.|--+||... ...+
T Consensus 68 ~L~~~i~~~~~~~~p~~I~V~ttc~~eiIGd------------Di~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~-~~~G 134 (417)
T cd01966 68 NLEEALDTLAERAKPKVIGLLSTGLTETRGE------------DIAGALKQFRAEHPELADVPVVYVSTPDFEGS-LEDG 134 (417)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccccccc------------CHHHHHHHHHhhccccCCCeEEEecCCCCCCc-HHHH
Confidence 344556667788999988877664332 343 234444444333 3578999999999753 3444
Q ss_pred HHHHHHHH
Q psy15137 679 AEACVRAL 686 (774)
Q Consensus 679 ~~a~v~~L 686 (774)
....+.+|
T Consensus 135 ~~~a~~al 142 (417)
T cd01966 135 WAAAVEAI 142 (417)
T ss_pred HHHHHHHH
Confidence 44444443
No 57
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=21.89 E-value=1.3e+02 Score=28.16 Aligned_cols=32 Identities=25% Similarity=0.466 Sum_probs=21.3
Q ss_pred CCcHHHHHHHHHHHHHHHHhcCCCEEEEecCCC
Q psy15137 596 MGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFD 628 (774)
Q Consensus 596 ~gD~~yl~af~~vl~pi~~~f~PdlIlVsaGfD 628 (774)
.+-.+++..+...+.. +...+||+|||+.|..
T Consensus 41 ~~~~~~~~~~~~~~~~-~~~~~~d~vvi~~G~N 72 (179)
T PF13472_consen 41 ATSSDFLARLQRDVLR-FKDPKPDLVVISFGTN 72 (179)
T ss_dssp -BHHHHHHHHHHHCHH-HCGTTCSEEEEE--HH
T ss_pred ccHhHHHHHHHHHHhh-hccCCCCEEEEEcccc
Confidence 4455566666665555 5899999999999964
No 58
>PF08963 DUF1878: Protein of unknown function (DUF1878); InterPro: IPR015058 This family consist of hypothetical bacterial proteins. ; PDB: 1SED_B.
Probab=21.82 E-value=80 Score=30.12 Aligned_cols=51 Identities=14% Similarity=0.346 Sum_probs=32.1
Q ss_pred HHHHHHhhhHHHHHHhhhhccccCCCCccccCCcccccccccccCCchHHhhhcCCCCCchhhhhHHHHHHhHc
Q psy15137 340 ELKQALDNYQFELQSLKHQYEAVHPGETFQIPEKIFEPTSLLSNLGDTEYLQELQSPTWTRAETDHLFDLCHRF 413 (774)
Q Consensus 340 elrka~~~~E~El~~lr~~~ea~~~~~~~~~p~~~~~~t~~v~~ytd~eY~~~L~~~~WtreETd~Lf~Lc~~f 413 (774)
++-+.++++||..+.|=.- + .+++-.|...+-..+||++|++-.++||+++
T Consensus 3 sle~rIekLEY~~kLLl~m---------v--------------D~~k~PFy~LvI~~~Ltkeevee~~~lce~l 53 (113)
T PF08963_consen 3 SLEQRIEKLEYYQKLLLEM---------V--------------DMEKYPFYALVIRKGLTKEEVEEFLRLCEEL 53 (113)
T ss_dssp THHHHHHHHHHHHHHHHTT---------S---------------TTT-HHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH---------c--------------CcccCCHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3567778888877765111 1 1233344444445699999999999999998
No 59
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=21.64 E-value=2.5e+02 Score=32.17 Aligned_cols=58 Identities=9% Similarity=0.055 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEecC-CCCCCCCCCCCCccccCHHHHHHHHHHHhhhcCCcEEEEeCCCCCch
Q psy15137 604 AFRTIVMPVAKEFDPQIVLVSAG-FDAAAGHPPPLGGYKLSPACFGYMTQQLMTLADGKVVLALEGGYDLP 673 (774)
Q Consensus 604 af~~vl~pi~~~f~PdlIlVsaG-fDa~~~Dp~plg~~~lt~~~y~~l~~~l~~la~grvv~vLEGGY~~~ 673 (774)
.+.+.|.-+.+.|+|++|+|.++ .....|| ++..+.+.+..-.+.+++.+--.||...
T Consensus 72 kL~~~I~~~~~~~~p~~I~v~~tC~~~iIGd------------Di~~v~~~~~~~~~~~vi~v~t~gf~g~ 130 (430)
T cd01981 72 KVVENITRKDKEEKPDLIVLTPTCTSSILQE------------DLQNFVRAAGLSSKSPVLPLDVNHYRVN 130 (430)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHhh------------CHHHHHHHhhhccCCCeEEecCCCccch
Confidence 45555666778899998877666 4555555 2444555554334668888888999753
No 60
>PF09754 PAC2: PAC2 family; InterPro: IPR019151 This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome, which is about 2000 kilodaltons (kDa) in molecular mass and contains one 20S core particle structure and two 19S regulatory caps. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits [, , , ].; PDB: 3MNF_A 2P90_B 3E35_A 3GAA_D 2WAM_C.
Probab=21.50 E-value=91 Score=32.00 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCC
Q psy15137 601 YLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGH 633 (774)
Q Consensus 601 yl~af~~vl~pi~~~f~PdlIlVsaGfDa~~~D 633 (774)
+...|-+.|+..+.+++..-|++-.|++++..+
T Consensus 82 ~~~~f~~~l~~~~~~~g~~~vi~l~g~~~~~~~ 114 (219)
T PF09754_consen 82 RWYEFAEELLDWIKSFGVKEVIVLGGLPAMEPH 114 (219)
T ss_dssp GHHHHHHHHHHHHHHTTECEEEEEEEEEESS-T
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeCCcCCCCc
Confidence 445566668899999999999999999999865
No 61
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=21.42 E-value=65 Score=36.73 Aligned_cols=26 Identities=38% Similarity=0.787 Sum_probs=22.8
Q ss_pred CCCchhhhhHHHHHHhHcCcceeEEEcc
Q psy15137 396 PTWTRAETDHLFDLCHRFDLRFIVIHDR 423 (774)
Q Consensus 396 ~~WtreETd~Lf~Lc~~fDlR~ivI~DR 423 (774)
.-||++|-..|-+||++||+| ||.|.
T Consensus 173 rvwt~eeL~~i~elc~kh~v~--VISDE 198 (388)
T COG1168 173 RVWTKEELRKIAELCLRHGVR--VISDE 198 (388)
T ss_pred ccccHHHHHHHHHHHHHcCCE--EEeec
Confidence 479999999999999999987 55676
Done!