RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15137
(774 letters)
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural
genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens}
PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A*
2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Length = 421
Score = 334 bits (859), Expect = e-108
Identities = 125/197 (63%), Positives = 153/197 (77%)
Query: 533 WDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGAL 592
WDVHHGNGTQQ FY D VLY+S+HRHDDGNFFPG+G E G G+G GFN+N+AW+G L
Sbjct: 224 WDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGL 283
Query: 593 NPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQ 652
+PPMGD EYLAAFR +VMP+A+EF P +VLVSAGFDAA GHP PLGGY +S CFGYMTQ
Sbjct: 284 DPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQ 343
Query: 653 QLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPPLSQEELTRSPCLKAVETLQ 712
QLM LA G VVLALEGG+DL ++CD++EACV ALLG+ PLS+E + P L A+ +L+
Sbjct: 344 QLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLE 403
Query: 713 KTIAIQVSHWPVLKRSA 729
I + +W ++R A
Sbjct: 404 AVIRVHSKYWGCMQRLA 420
Score = 50.9 bits (122), Expect = 8e-07
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 486 PEQCGTGAGLGFNINIAWSGALNPPMGDAEYL 517
++ G G+G GFN+N+AW+G L+PPMGD EYL
Sbjct: 262 VDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYL 293
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A
{Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A*
2vcg_A*
Length = 369
Score = 274 bits (702), Expect = 2e-85
Identities = 62/199 (31%), Positives = 95/199 (47%), Gaps = 13/199 (6%)
Query: 533 WDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGAL 592
WDVHHGNGTQ I+++D VL +S+H+H F P +G E G G G G+NIN+
Sbjct: 179 WDVHHGNGTQDIWWNDPSVLTISLHQH--LCFPPDSGYSTERGAGNGHGYNINVPL---- 232
Query: 593 NPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQ 652
P G+A YL A +V+P + + PQ+++V +GFDA+ PL ++ F M +
Sbjct: 233 PPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLD--PLARMMVTADGFRQMAR 290
Query: 653 QLMTLAD----GKVVLALEGGYDLPSMCDSAEACVRALLGDAPPPL-SQEELTRSPCLKA 707
+ + A G++V EGGY + A + L G P E L
Sbjct: 291 RTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGMGGNTL 350
Query: 708 VETLQKTIAIQVSHWPVLK 726
++ + I V ++
Sbjct: 351 LDAERAAIEEIVPLLADIR 369
Score = 43.1 bits (102), Expect = 2e-04
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 486 PEQCGTGAGLGFNINIAWSGALNPPMGDAEYL 517
+ G G G G+NIN+ P G+A YL
Sbjct: 215 STERGAGNGHGYNINVPL----PPGSGNAAYL 242
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A
{Burkholderia pseudomallei 1710B}
Length = 362
Score = 225 bits (576), Expect = 4e-67
Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 8/156 (5%)
Query: 533 WDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGAL 592
D+HHG G Q+IFY+ + VLY+SIH + G E G G GLG+N+N+
Sbjct: 212 TDMHHGQGIQEIFYARRDVLYVSIHGDPTNFYPAVAGFDDERGAGEGLGYNVNLPM---- 267
Query: 593 NPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQ 652
+A + + + F P +++S GFD P ++ FG +
Sbjct: 268 PHGSSEAAFFERVDDALRELR-RFAPDALVLSLGFDVYRDD--PQSQVAVTTDGFGRLGH 324
Query: 653 QLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLG 688
+ L V+ EGGY + S+ +A +
Sbjct: 325 LIGALR-LPTVIVQEGGYHIESLEANARSFFGGFGA 359
Score = 40.1 bits (94), Expect = 0.002
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 486 PEQCGTGAGLGFNINIAWSGALNPPMGDAEYL 517
++ G G GLG+N+N+ +A +
Sbjct: 250 DDERGAGEGLGYNVNLPM----PHGSSEAAFF 277
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold,
deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N;
2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Length = 341
Score = 206 bits (525), Expect = 3e-60
Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 10/157 (6%)
Query: 533 WDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGAL 592
D HHGNGTQ IFY V + S+H F G E G GAG G N
Sbjct: 194 VDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPHFLGYAEETGKGAGAGTTANYPM---- 249
Query: 593 NPP-MGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMT 651
+ + A + +A F + ++VS G D P+ +KL+ + M
Sbjct: 250 -GRGTPYSVWGEALTDSLKRIA-AFGAEAIVVSLGVDTFEQD--PISFFKLTSPDYITMG 305
Query: 652 QQLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLG 688
+ + +++ +EGGY +P + + ++ + G
Sbjct: 306 RTIAAS-GVPLLVVMEGGYGVPEIGLNVANVLKGVAG 341
Score = 33.2 bits (76), Expect = 0.34
Identities = 7/33 (21%), Positives = 10/33 (30%), Gaps = 6/33 (18%)
Query: 486 PEQCGTGAGLGFNINIAWSGALNPP-MGDAEYL 517
E+ G GAG G N + +
Sbjct: 232 AEETGKGAGAGTTANYPM-----GRGTPYSVWG 259
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme,
arginase fold, HDAC8, histon deacetylase, hydroxamate
inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens}
PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A*
2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A*
1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Length = 388
Score = 192 bits (489), Expect = 2e-54
Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Query: 533 WDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGAL 592
D+HHG+G + F +V+ +S+H+ G FFPGTG + G G G +++N+
Sbjct: 177 LDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGDVSDVGLGKGRYYSVNVPI---- 231
Query: 593 NPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQ 652
+ D +Y +++ V + F+P+ V++ G D AG P+ + ++P G +
Sbjct: 232 QDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD--PMCSFNMTPVGIGKCLK 289
Query: 653 QLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPP 693
++ ++ GGY+L + +LG
Sbjct: 290 YILQWQ-LATLILGGGGYNLANTARCWTYLTGVILGKTLSS 329
Score = 34.2 bits (79), Expect = 0.14
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 486 PEQCGTGAGLGFNINIAWSGALNPPMGDAEYLS 518
G G G +++N+ + D +Y
Sbjct: 214 VSDVGLGKGRYYSVNVPI----QDGIQDEKYYQ 242
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase;
HET: LLX NHE; 2.05A {Homo sapiens}
Length = 367
Score = 190 bits (486), Expect = 2e-54
Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 9/161 (5%)
Query: 533 WDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGAL 592
D+HHG+G ++ FY+ RV+ +S H++ G +FPGTG + G G G + +N
Sbjct: 169 IDIHHGDGVEEAFYTTDRVMTVSFHKY--GEYFPGTGDLRDIGAGKGKYYAVNFPM---- 222
Query: 593 NPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQ 652
+ D Y F+ I+ V + + P V++ G D+ +G LG + L+ +
Sbjct: 223 RDGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGD--RLGCFNLTVKGHAKCVE 280
Query: 653 QLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPP 693
+ T +++ GGY + ++ L P
Sbjct: 281 VVKTFN-LPLLMLGGGGYTIRNVARCWTYETAVALDCEIPN 320
Score = 34.2 bits (79), Expect = 0.13
Identities = 8/41 (19%), Positives = 11/41 (26%), Gaps = 6/41 (14%)
Query: 480 RLFERT--PEQCGTGAGLGFNINIAWSGALNPPMGDAEYLS 518
F T G G G + +N + D Y
Sbjct: 197 EYFPGTGDLRDIGAGKGKYYAVNFPM----RDGIDDESYGQ 233
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta
fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2
PDB: 1c3r_A* 1c3s_A*
Length = 375
Score = 189 bits (481), Expect = 1e-53
Identities = 46/174 (26%), Positives = 71/174 (40%), Gaps = 10/174 (5%)
Query: 533 WDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGAL 592
D HH +G Q+ FY +V LS+H+ + F G E G G G G+N+NI
Sbjct: 167 LDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPL---- 222
Query: 593 NPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQ 652
+ D E+L A + V + F+P++ L+ G D L + LS F
Sbjct: 223 PKGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLED--YLSKFNLSNVAFLKAFN 280
Query: 653 QLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPP---PLSQEELTRSP 703
+ + G+ V GGY ++ + L G P +EL +S
Sbjct: 281 IVREVF-GEGVYLGGGGYHPYALARAWTLIWCELSGREVPEKLNNKAKELLKSI 333
Score = 34.3 bits (79), Expect = 0.16
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 486 PEQCGTGAGLGFNINIAWSGALNPPMGDAEYLS 518
E+ G G G G+N+NI + D E+L
Sbjct: 205 LEEIGEGKGKGYNLNIPL----PKGLNDNEFLF 233
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A
{Homo sapiens}
Length = 376
Score = 186 bits (475), Expect = 1e-52
Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 8/161 (4%)
Query: 533 WDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGAL 592
D+HHG+G Q+ FY RV+ +S H++ + FFPGTG E G +G + +N+
Sbjct: 169 IDIHHGDGVQEAFYLTDRVMTVSFHKYGNY-FFPGTGDMYEVGAESGRYYCLNVPL---- 223
Query: 593 NPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQ 652
+ D Y F+ ++ V + P +++ G D+ LG + LS G +
Sbjct: 224 RDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCD--RLGCFNLSIRGHGECVE 281
Query: 653 QLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPP 693
+ + +++ GGY + ++ L+ +A
Sbjct: 282 YVKSFN-IPLLVLGGGGYTVRNVARCWTYETSLLVEEAISE 321
Score = 34.3 bits (79), Expect = 0.14
Identities = 5/33 (15%), Positives = 11/33 (33%), Gaps = 4/33 (12%)
Query: 486 PEQCGTGAGLGFNINIAWSGALNPPMGDAEYLS 518
+ G +G + +N+ + D Y
Sbjct: 206 MYEVGAESGRYYCLNVPL----RDGIDDQSYKH 234
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation,
chromatin, structural genomics consortium, SGC,
activator, chromatin regulator; HET: DNA; 1.80A {Homo
sapiens}
Length = 93
Score = 141 bits (357), Expect = 4e-40
Identities = 53/89 (59%), Positives = 65/89 (73%), Gaps = 1/89 (1%)
Query: 115 GKEYPFARFNKQVSIPTYTDTEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDT 174
GK+YPFARFNK V +P Y++ EY L WT+AETDHLFDL RFDLRF+VIHDRYD
Sbjct: 2 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDH 61
Query: 175 NKFPTSRTIEDLKQRYYFVCHTLAKMRGT 203
+F R++EDLK+RYY +C LA +R
Sbjct: 62 QQFK-KRSVEDLKERYYHICAKLANVRAV 89
Score = 104 bits (261), Expect = 4e-27
Identities = 40/70 (57%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 386 DTEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFV 445
+ EY L WT+AETDHLFDL RFDLRF+VIHDRYD +F R++EDLK+RYY +
Sbjct: 21 EQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFK-KRSVEDLKERYYHI 79
Query: 446 CYTLAKMRGT 455
C LA +R
Sbjct: 80 CAKLANVRAV 89
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 78.4 bits (192), Expect = 6e-15
Identities = 85/532 (15%), Positives = 166/532 (31%), Gaps = 146/532 (27%)
Query: 3 SDIRDILELERDAPAEITREAIIGVDKTRKMQPN------KYKKEKRPEGMAREVFA--- 53
S + E+ ++ + V + N K E+R M ++
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVL-----RINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 54 -LLCNDNRDAPPLLPTDSGQGYKHTKAKLGMRKVRPWKWLPFSNPARKDNAVFHHWRRVT 112
L NDN + + + K + + ++RP K + +
Sbjct: 117 DRLYNDN---QVFAKYNVSRLQPYLKLRQALLELRPAKNV-----------LID------ 156
Query: 113 DEGKEYPFARFNKQV-SIPTYTDTEYLQELQSPT-W--------TRAETDHLFDLCHRFD 162
G K ++ + ++ W + L L ++ D
Sbjct: 157 --GV----LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 163 LRFIVIHDRYDTNKFPTSRTIEDLK----QRYY--------------------FVCHTLA 198
+ D K +L+ + Y C L
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 199 KMRGTECSGGNEPKLFDAEHEKKRK----EQLKRLFERTPEQVEEEQMLLAELKKIEIRR 254
R + + D + TP++V+ LL K ++ R
Sbjct: 271 TTRFKQ--------VTDFLSAATTTHISLDHHSMTL--TPDEVKS---LLL--KYLDCRP 315
Query: 255 KE--RDRKTQDLQKLMTAADMQADNRKTDK--KMPPKRKLTHQIRPRSLDTSVKTTAFQT 310
++ R+ T + ++L A+ D T K KLT I SL+ ++ ++
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-SSLN-VLEPAEYRK 373
Query: 311 L-IDLGLNP----IPTEEIVTHYNELRSD--MVLLYEL-KQAL-----DNYQFEL----Q 353
+ L + P IPT + + ++ MV++ +L K +L +
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 354 SLKHQYE---AVHPG--ETFQIPEKIFEPTSLLSNLGDTEY--------LQELQSPTWTR 400
LK + E A+H + + IP+ F+ L+ D +Y L+ ++
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKT-FDSDDLIPPYLD-QYFYSHIGHHLKNIE-----H 486
Query: 401 AETDHLFDLCHRFDLRFI---VIHDRYDTN-KFPTSRTIEDLKQRYY--FVC 446
E LF + D RF+ + HD N T++ L ++Y ++C
Sbjct: 487 PERMTLFRMVF-LDFRFLEQKIRHDSTAWNASGSILNTLQQL--KFYKPYIC 535
Score = 63.7 bits (154), Expect = 2e-10
Identities = 86/613 (14%), Positives = 170/613 (27%), Gaps = 190/613 (30%)
Query: 106 HHWRRVTDEGK-EYPFARFNKQVSIPTYT---DTEYLQELQSPTWTRAETDHLFDLCHRF 161
HH + G+ +Y + V + D + +Q++ ++ E DH+
Sbjct: 3 HHHHMDFETGEHQYQYKDI-LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 162 D--LRFIVIHDRYDTNKFPTSRTIED-LKQRYYFVCHTLAKMRGTECSGGNEPKLFDAEH 218
LR + +E+ L+ Y F+ + TE +P + +
Sbjct: 62 SGTLRLFWTLLSKQEEMV--QKFVEEVLRINYKFLMSPIK----TEQ---RQPSMMTRMY 112
Query: 219 EKKRK------EQLKRLFERTPEQVEEEQMLLAELKK----------------------- 249
++R + + + + + L EL+
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 250 --------------IEIRRKERDRKT-QDLQKLMTAAD----MQADN------RKTDKKM 284
+ ++ + LQKL+ D ++D+ R +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 285 PPKRKLTHQIRPRSL---------------DTSVK---TTAFQTLIDLGLNPIPTEEIVT 326
+R L + L + S K TT F+ + D T +
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 327 HYNE-LRSDMVLLYELKQALDNY-QFELQSLKHQYEAVHP------GETFQIP------- 371
H++ L D E+K L Y Q L + +P E+ +
Sbjct: 293 HHSMTLTPD-----EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 372 --------EKIFEPTSLLSNLGDTEYLQELQS----------PT------W---TRAETD 404
I E S L+ L EY + PT W +++
Sbjct: 348 KHVNCDKLTTIIE--SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 405 HLFDLCHRFDL-------RFIVIHDRYDTNKFPTSRTIEDLKQ--RYYFVCYTLAKMRGT 455
+ + H++ L I I Y +E+ R Y + K T
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIY----LELKVKLENEYALHRSIVDHYNIPK---T 458
Query: 456 ECSGGNEPKLFD-------AEH-EKKRKEQLKRLFERTPEQCGTGAGLGF------NINI 501
S P D H + + LF F + +
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD------FRFLEQKIRHDST 512
Query: 502 AW--SGALNPPMGDAE----YLSSDGREKTQY------FPFRC-WDVHHGNGT---QQIF 545
AW SG++ + + Y+ + + + F + ++ T +
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
Query: 546 YSDKRVLYLSIHR 558
++ ++ H+
Sbjct: 573 MAEDEAIFEEAHK 585
Score = 54.1 bits (129), Expect = 1e-07
Identities = 69/521 (13%), Positives = 146/521 (28%), Gaps = 193/521 (37%)
Query: 350 FELQSLKHQYEAVHPGETFQIPEKIFEPTSLLSNLGDTEYLQELQSPTWTRAETDHLFDL 409
FE ++QY+ + +FE + + N D + +Q++ ++ E DH+
Sbjct: 9 FETGEHQYQYKDILS---------VFED-AFVDNF-DCKDVQDMPKSILSKEEIDHIIMS 57
Query: 410 CHRFD--LRFIVIHDRYDTNKFPTSRTIED-LKQRYYFVCYTLAKMRGTECSGGNEP--- 463
LR + +E+ L+ Y F+ ++ ++ TE +P
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMV--QKFVEEVLRINYKFL---MSPIK-TEQ---RQPSMM 108
Query: 464 -KLFDAEHEK-------------KRKE---QLKR-LFERTPEQ----CG-TGAG------ 494
+++ + ++ R + +L++ L E P + G G+G
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 495 ---------LGFNINIAW--SGALNPPMGDAEYLSSDGREKTQYFPFRCWDVHHGNGTQQ 543
+ I W N P E L + + R H + +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS---DHSSNIKL 225
Query: 544 IFYSDKRVL--YLSIHRH-------DDGNFFPGTGGPIECGTGAGLGFNINIAWSGALNP 594
+S + L L + +
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLN-------------------------VQ------ 254
Query: 595 PMGDAEYLAAF----RTIV----------MPVAKEFDPQIVLVSAGFDAAAGHPPPLGGY 640
+A+ AF + ++ + A + S
Sbjct: 255 ---NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL------------- 298
Query: 641 KLSPACFGYMTQQLMTLADGKVVLA--LEGGY-DLPSMCDSAEAC-----VRALLGDAPP 692
T + K +L L+ DLP E +++ +
Sbjct: 299 ---------------TPDEVKSLLLKYLDCRPQDLPR-----EVLTTNPRRLSIIAE--- 335
Query: 693 PLSQEELTRSPCLKAVETLQKTIAIQVS--------------HWPVLKRSAH------TI 732
++ L K V + T I+ S V SAH ++
Sbjct: 336 -SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 733 TWSALSAAEDNETVSAMASLSMNKKHLQVEDLLCTIPMMDI 773
W + ++ V+ + S+ +K ++ +IP + +
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQ--PKESTISIPSIYL 433
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.5 bits (141), Expect = 8e-09
Identities = 95/619 (15%), Positives = 155/619 (25%), Gaps = 247/619 (39%)
Query: 224 EQLKRLFERT-PEQVE-----EEQMLLAELKKIEIRRKERDRKTQDLQKLMTAADMQADN 277
QL+ F + PE E +E AEL + K + +
Sbjct: 31 SQLQEQFNKILPEPTEGFAADDEPTTPAEL----------------VGKFLGYVSSLVE- 73
Query: 278 RKTDKKMPPKRKLTHQIRPRSLDTSVKTTAFQTLIDLGLNPIPTEEIVTHYNELRSDMVL 337
P K Q+ L+ + F+ L N I H L
Sbjct: 74 -------PSKVGQFDQV----LNLCLT--EFENCY-LEGNDI-------H--------AL 104
Query: 338 LYELKQALDNYQFELQS-LKHQYEAVHPGETFQIPEKIFEPTSLLSNL------------ 384
+L Q D + + +K+ A + P ++L +
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARI---MAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 385 --GDTE-YLQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQR 441
G+T+ Y +EL+ ++ Y + DL
Sbjct: 162 GQGNTDDYFEELRD------------------------LYQTYHVL-------VGDL--- 187
Query: 442 YYFVCYTLAKMRGTECSGGNEPKLFDAEHEKKRKEQLKRLFERTPEQCGTGAGLGFNINI 501
+ E L L RT G NI +
Sbjct: 188 -------IKFSA----------------------ETLSEL-IRTTLDAEKVFTQGLNI-L 216
Query: 502 AW-SGALNPPMGDAEYLSSDGREKTQY-FPFRCWDVHHGNGTQQI--FYSDKRVLYLSIH 557
W N P D +YL S P G Q+ + ++L +
Sbjct: 217 EWLENPSNTP--DKDYLLS-----IPISCPL--------IGVIQLAHYVVTAKLLGFT-- 259
Query: 558 RHDDGNFFPGTGGPIECGTG---AGLGFNINIAWSGALNPPMGDAEYLAAFRTI------ 608
G G G A IA + + ++ +++ + I
Sbjct: 260 ---PGELRSYLKGATGHSQGLVTAVA-----IAETDS-----WESFFVSVRKAITVLFFI 306
Query: 609 ------VMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQQLMTL----- 657
P P I+ S + G P P+ LS +Q+
Sbjct: 307 GVRCYEAYPNT-SLPPSILEDSL--ENNEGVPSPM----LS--ISNLTQEQVQDYVNKTN 357
Query: 658 ----ADGKVVLALEGGYD------LPSMCDSAEACVRALLG-DAPP-------PLSQEEL 699
A +V ++L G P S L AP P S+ +L
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQ---SLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 700 ---TR---------SPCLK-AVETLQ-----KTIAIQVSHW--PVLKRSAHTITWSALSA 739
R S L A + + ++ PV T S L
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY----DTFDGSDLRV 470
Query: 740 AEDNET---VSAMASLSMN 755
+ + V + L +
Sbjct: 471 LSGSISERIVDCIIRLPVK 489
Score = 48.1 bits (114), Expect = 1e-05
Identities = 53/326 (16%), Positives = 81/326 (24%), Gaps = 129/326 (39%)
Query: 479 KRLFERTPEQCGTGAGLGFNI-NIAWSGALNPPMGDAEYLSSDGREKTQYFPFRCWDVHH 537
+ ++ R GF+I +I + NP T +F
Sbjct: 1643 QDVWNRADNH--FKDTYGFSILDIVIN---NPV------------NLTIHFG-------- 1677
Query: 538 GNGTQQIFYSDKRVLYLSI--HRHDDGNF-----FPGTGGPIECGTGAGLGFNINIAWSG 590
G ++I R Y ++ DG F + +
Sbjct: 1678 GEKGKRI-----RENYSAMIFETIVDGKLKTEKIFKEINEHST-----------SYTFRS 1721
Query: 591 ---ALN------PPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGF---DAA-AGHPPPL 637
L+ P + E AAF L S G DA AGH L
Sbjct: 1722 EKGLLSATQFTQPALTLMEK-AAFE--------------DLKSKGLIPADATFAGHS--L 1764
Query: 638 GGYK-LSPACFGYMTQQLMTLADG-KVV----LAL-------EGGYDLPSMCDSAEACVR 684
G Y L A +M++ +VV + + E G M V
Sbjct: 1765 GEYAAL--ASLA----DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVA 1818
Query: 685 ALLGDAPPPLSQEELTR------------SP-----C---LKAVETLQKTIAIQVSHWPV 724
A E + + L+A++T+ V
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTN----------V 1868
Query: 725 LKR-SAHTITWSALSAAEDNETVSAM 749
L I L + E V
Sbjct: 1869 LNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 42.3 bits (99), Expect = 7e-04
Identities = 79/517 (15%), Positives = 139/517 (26%), Gaps = 204/517 (39%)
Query: 93 PFSNPARKDNAVFHHWRRVTDEGKEYPFARFNKQVSIPTYTDTEYLQELQSPTWTRAETD 152
PF + ++A+F R EG A F Q + +Y +EL+ +
Sbjct: 136 PFDKKS--NSALF----RAVGEGNAQLVAIFGGQGNT-----DDYFEELRD-LYQTYHV- 182
Query: 153 HLFDLCHRFDLRFI-VIHDRYDTNKF-------------PTSRTIED------------- 185
+ DL +I D K P++ +D
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG 242
Query: 186 LKQ--RYYFVCHTL--------AKMRG-TECSGG-----------NEPKLFDAEHEKKRK 223
+ Q Y L + ++G T S G + F + +
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV-----R 297
Query: 224 EQLKRLF-------ERTPEQVEEEQMLLAELKKIE--------IRRKERDRKTQDLQKLM 268
+ + LF E P +L L+ E I ++ +Q +
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE----QVQDYV 353
Query: 269 TAADMQADNRKTDKKMPPKRKLTHQIRPRSLDTSVKTTAFQTLIDLGLNPIPTEEIVTHY 328
KT+ +P +++ +I SL
Sbjct: 354 ---------NKTNSHLPAGKQV--EI---SL----------------------------V 371
Query: 329 NELRSDMVL------LYELKQALDNYQFELQSLKHQYEAVHPGETFQIP---EK------ 373
N ++ +V+ LY L L + +A + +IP K
Sbjct: 372 NGAKN-LVVSGPPQSLYGLNLTL-----------RKAKAPSGLDQSRIPFSERKLKFSNR 419
Query: 374 ---IFEP--TSLLSNLGDTEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNK 428
+ P + LL D ++L + F+ D++ V YDT
Sbjct: 420 FLPVASPFHSHLLVPASDL-INKDLVKNNVS-------FNAK---DIQIPV----YDT-- 462
Query: 429 FPTSRTIEDLKQRYYFVCYTLAKMRGTECSGGNEPKL--FDAEH-------EKKRKEQLK 479
DL+ + + F A H L
Sbjct: 463 ----FDGSDLRVLSGSISERIVDCIIRLPV--KWETTTQFKATHILDFGPGGASG---LG 513
Query: 480 RLFERTPEQCGTGAGLGFNINIAWSGALNPPMGDAEY 516
L R + GTG + + +G L+ D +Y
Sbjct: 514 VLTHRNKD--GTG------VRVIVAGTLDINP-DDDY 541
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 49.0 bits (116), Expect = 9e-07
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 11/84 (13%)
Query: 209 NEPKLFDAEHEKKRK---EQLKRLFERTPEQVEEEQMLLAELKKIEIRRKERDRKTQDLQ 265
+ E E RK EQ KRL E EQ + KK ++ + + Q ++
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKK-DLEEWNQRQSEQ-VE 132
Query: 266 KLMTAADMQADNRKTDKKMPPKRK 289
K + +NR DK +
Sbjct: 133 KN------KINNRIADKAFYQQPD 150
Score = 29.7 bits (66), Expect = 2.4
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 13/56 (23%)
Query: 215 DAEHEKKRKE-------QLKRLFERTPEQVE--EEQMLLAELKKIEIRRKERDRKT 261
DA + +E L+ +R EQVE + +A+ + ++ D
Sbjct: 102 DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD----KAFYQQPDADI 153
Score = 29.4 bits (65), Expect = 3.4
Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 461 NEPKLFDAEHEKKRK---EQLKRLFER 484
+ E E RK EQ KRL E
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQEL 101
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 35.1 bits (81), Expect = 0.12
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 215 DAEHEKKRKEQL----KRLFERTPEQVEEEQMLLAELKKIEIRRKERDRKTQDLQKLMTA 270
E KK L +L + EQ +E + LL ++ +EI K + + +
Sbjct: 915 SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974
Query: 271 ADMQADNRKTDKK 283
++ +A N
Sbjct: 975 SEEEAKNATNRVL 987
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 34.3 bits (78), Expect = 0.12
Identities = 22/152 (14%), Positives = 45/152 (29%), Gaps = 10/152 (6%)
Query: 212 KLFDAEHEKKRKEQLKRLFERTPEQVEEEQMLLAELKK-IEIRRKERDRKTQDLQKLMTA 270
+L + H K + L+ L + +++ K I +E+ + K
Sbjct: 9 QLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQT 68
Query: 271 ADMQADNRKTDKKMPPKRKLTHQIRPRSLDTSVKTTAFQTLIDLGLNPIPTEEIVTHYNE 330
+ +K K++ R L + N EI NE
Sbjct: 69 LQDTNAKIASIQK-----KMSEIKSERELRSLNIEEDIAKERSNQAN----REIENLQNE 119
Query: 331 LRSDMVLLYELKQALDNYQFELQSLKHQYEAV 362
++ +LK+ + + L+ E
Sbjct: 120 IKRKSEKQEDLKKEMLELEKLALELESLVENE 151
Score = 28.5 bits (63), Expect = 8.3
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 8/60 (13%)
Query: 224 EQLKRLFERTPEQVEEEQMLLAELKKIEIRRKERDRKTQDLQKLMTAADMQADNRKTDKK 283
LK+L E L E+ +E +E+ + A + N + +K
Sbjct: 5 THLKQLIEI--------SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKL 56
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 33.3 bits (76), Expect = 0.36
Identities = 26/147 (17%), Positives = 64/147 (43%), Gaps = 17/147 (11%)
Query: 216 AEHEKKRKEQLKRLFERTPEQVEEEQMLLAELKKIEIRRKERDRKTQDLQKLMTAADMQA 275
A++ K K + + + ++++E+ EL+K +++ + ++ DL + + A++QA
Sbjct: 1027 AKNLTKLKNKHESMISELEVRLKKEEKSRQELEK---IKRKLEGESSDLHEQI--AELQA 1081
Query: 276 DNRKTDKKMPPKRKLTHQIRPRSLDTSVKTTAFQTLIDLGLNPIPTEEIVTHYNELRSDM 335
+ ++ K + R D + + I E+ +H ++L+ D
Sbjct: 1082 QIAELKAQLAKKEEELQAALARLEDETSQKNNALKKI---------RELESHISDLQED- 1131
Query: 336 VLLYELKQALDNYQFELQSLKHQYEAV 362
L K A + + + + L + EA+
Sbjct: 1132 --LESEKAARNKAEKQKRDLSEELEAL 1156
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 32.6 bits (74), Expect = 0.69
Identities = 32/191 (16%), Positives = 66/191 (34%), Gaps = 24/191 (12%)
Query: 212 KLFDAEHEKKRKE---QLKRL------FERTPEQVEEEQMLLAELKKIEIRRKERDRKTQ 262
+KR + + L T QV++ Q+ LA+ +E D K +
Sbjct: 1902 NQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKN------RELDVKNE 1955
Query: 263 DLQKLMTAADMQADNRKTDKKMPPKRKLTHQIRPRSLDTSVKTTAFQTLIDLGLNPIPTE 322
+ + M D + + K R+L Q+ R+ + +V+ ++ P
Sbjct: 1956 QANQKL--KQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLR 2013
Query: 323 EIVTHYN-ELRSDMVLLYELKQALDNYQFELQSLKHQYEAVHPG------ETFQIPEKIF 375
E V + E+ + + + + K +Y + E+ ++ K+
Sbjct: 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073
Query: 376 EPTSLLSNLGD 386
+LL NL
Sbjct: 2074 RSIALLDNLNS 2084
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 31.7 bits (71), Expect = 0.82
Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 2/106 (1%)
Query: 220 KKRKEQLKRLFERTPEQVEEEQMLLAELKKIEIRRKERDRKTQDLQKLMTAADMQADNRK 279
KR+ + E+ ++V E++ AE K+ R E+ + Q + K
Sbjct: 16 LKRRREEVWAAEKK-QKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMK 74
Query: 280 TDKKMPPKRKLTHQIRPRSLDTSVKTTAFQTLIDLGLNPIPTEEIV 325
+ P+ K +R R ++ + L L L I +
Sbjct: 75 GGFYVSPEAKPLFVVRIRG-INAMHPKTKKILQLLRLRQIFNGVFL 119
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 31.5 bits (70), Expect = 1.2
Identities = 12/97 (12%), Positives = 29/97 (29%), Gaps = 7/97 (7%)
Query: 180 SRTIEDLKQRYYFVCHTLAKMRGTECSGGNEPKLFDAEHEKKRKEQLKRLFERTPEQVEE 239
DLK + + + NE L E ++ ++ E +Q
Sbjct: 573 EGLENDLKSVNFDMTSKFLTALAQD-GVINEEALSVTELDRVYGGLTTKVQESLKKQEGL 631
Query: 240 EQML------LAELKKIEIRRKERDRKTQDLQKLMTA 270
+ + +++K+ R+ ++L
Sbjct: 632 LKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDN 668
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil,
hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Length = 251
Score = 30.9 bits (69), Expect = 1.3
Identities = 12/85 (14%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 209 NEPKLFDAEHEKKRKEQLKRLFERTPEQVEEEQMLLAELKKIEIRRKERDRKTQDLQKLM 268
E K E K+ K+L + ++++ + + + ++R +++
Sbjct: 123 AELKALKESSESNIKDIKKKLEAKRLDRIQ-------VMMRSTSDKAAQERLKKEINNSH 175
Query: 269 TAADMQADNRKTDKKMPPKRKLTHQ 293
+Q T+K ++KL +
Sbjct: 176 IQEVVQTIKLLTEKTARYQQKLEEK 200
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein,
homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens}
SCOP: a.4.1.4 PDB: 1ba5_A
Length = 53
Score = 28.0 bits (63), Expect = 1.4
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 146 WTRAETDHLFDLCHRF-DLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVCHTLAKMR 201
W E +L ++ + + I Y N +RT LK R+ T+ K++
Sbjct: 5 WLWEEDKNLRSGVRKYGEGNWSKILLHYKFN----NRTSVMLKDRW----RTMKKLK 53
Score = 25.7 bits (57), Expect = 9.6
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 398 WTRAETDHLFDLCHRF-DLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVCYTLAKMR 453
W E +L ++ + + I Y N +RT LK R+ T+ K++
Sbjct: 5 WLWEEDKNLRSGVRKYGEGNWSKILLHYKFN----NRTSVMLKDRW----RTMKKLK 53
>3ge6_A Nitroreductase; structural GENO joint center for structural
genomics, JCSG, protein structu initiative, PSI-2,
oxidoreductase; HET: FMN; 1.85A {Exiguobacterium
sibiricum 255-15}
Length = 212
Score = 30.7 bits (70), Expect = 1.5
Identities = 18/141 (12%), Positives = 43/141 (30%), Gaps = 36/141 (25%)
Query: 167 VIHDRYDTNKFPTSRTI--EDLKQ-----------------RYYFVCHTLAKMRGTECSG 207
++ R + T+ I E++ Q R+ + K +
Sbjct: 13 IVKGRRSIRNYDTNVKISKEEMTQILEEATLAPSSVNMQPWRFLVIDSEEGKATLAPLAK 72
Query: 208 GNEPKLFDAEH------EKKRKEQLKRLFERTPEQ----VEEEQMLLAELKKIEIRRKER 257
N+ ++ + + K +QL+ +++ E+ E + ++ +
Sbjct: 73 FNQVQVETSSAVIAVFGDMKAIDQLENIYDTAVEKGLMPQEVRDRQVPAIQGMYENVPAS 132
Query: 258 DRK---TQD----LQKLMTAA 271
K D +LM A
Sbjct: 133 ALKDSILIDSGLVSMQLMLVA 153
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein,
homeodomain, mitosis, cell cycle, nuclear protein; 1.8A
{Homo sapiens} SCOP: a.4.1.4
Length = 55
Score = 28.1 bits (63), Expect = 1.5
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 146 WTRAETDHLFDLCHRF-DLRFIVIHDRYDTNKFPTSRTIEDLKQRY 190
WT E++ + ++ + + I Y +RT +K R+
Sbjct: 5 WTVEESEWVKAGVQKYGEGNWAAISKNYPFV----NRTAVMIKDRW 46
Score = 28.1 bits (63), Expect = 1.5
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 398 WTRAETDHLFDLCHRF-DLRFIVIHDRYDTNKFPTSRTIEDLKQRY 442
WT E++ + ++ + + I Y +RT +K R+
Sbjct: 5 WTVEESEWVKAGVQKYGEGNWAAISKNYPFV----NRTAVMIKDRW 46
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET:
ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB:
1j1w_A*
Length = 741
Score = 30.8 bits (69), Expect = 2.2
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 578 AGLGFNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPL 637
G F + + W+ AL D E A F +AK + AA G P +
Sbjct: 657 RGSHFYLALYWAQALAAQTEDKELQAQFT----GIAKALTDNETKIVGELAAAQGKPVDI 712
Query: 638 GGY 640
GY
Sbjct: 713 AGY 715
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase;
1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Length = 738
Score = 30.8 bits (69), Expect = 2.3
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 578 AGLGFNINIAWSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPL 637
G F + W+ L DA+ A F PVA+ + + A A G L
Sbjct: 653 RGSHFWLTKFWADELAAQTEDADLAATFA----PVAEALNTGAADIDAALLAVQGGATDL 708
Query: 638 GGY 640
GGY
Sbjct: 709 GGY 711
>3qdl_A Oxygen-insensitive NADPH nitroreductase; oxidoreductase; HET: FMN;
2.00A {Helicobacter pylori}
Length = 210
Score = 29.7 bits (67), Expect = 2.4
Identities = 10/140 (7%), Positives = 38/140 (27%), Gaps = 35/140 (25%)
Query: 167 VIHDRYDTNKFPTSRTI--EDLKQ-----------------RYYFVCHTLAKMRGTECSG 207
++++R+ F + +L++ + V K + S
Sbjct: 12 LLNERHSCKMFDSHYEFSSTELEEIAEIARLSPSSYNTQPWHFVMVTDKDLKKQIAAHSY 71
Query: 208 GNEPKLFDAEH-------EKKRKEQLKRLFERTPEQVEEEQMLLAELKKIEIRRKERDRK 260
NE + A + + + +++ + + + +R ++
Sbjct: 72 FNEEMIKSASALMVVCSLRPSELLPHGHYMQNLYPESYKVRVIPSFAQMLGVRFNHSMQR 131
Query: 261 TQD---------LQKLMTAA 271
+ + ++
Sbjct: 132 LESYILEQCYIAVGQICMGV 151
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 29.2 bits (65), Expect = 4.8
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 220 KKRKEQLKRLFERTPEQVEEEQMLLAELKKIEIRRKERDRKTQDLQKLMTAADMQADNRK 279
KK+ + LK E ++ +E A+ K E R K+ + + LQK + A + + D
Sbjct: 5 KKKMQMLKLDKENALDRADE---AEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYS 61
Query: 280 TDKK 283
K
Sbjct: 62 EALK 65
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase;
PLP-dependent transferase-like fold, structural
genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Length = 377
Score = 29.4 bits (67), Expect = 4.9
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 146 WTRAETDHLFDLCHRFDLRFIV--IH 169
+ + L DL HR+D R +V IH
Sbjct: 167 FAPEWLNELCDLAHRYDARVLVDEIH 192
Score = 29.4 bits (67), Expect = 4.9
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 398 WTRAETDHLFDLCHRFDLRFIV--IH 421
+ + L DL HR+D R +V IH
Sbjct: 167 FAPEWLNELCDLAHRYDARVLVDEIH 192
>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere,
DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4
PDB: 1xg1_A 1vfc_A
Length = 64
Score = 26.6 bits (59), Expect = 6.0
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 146 WTRAETDHLFDLCHRFDL-RFIVIHDRYDTNKFPTSRTIEDLKQRY 190
WT E++ + ++ + I Y +RT +K R+
Sbjct: 14 WTVEESEWVKAGVQKYGEGNWAAISKNYPFV----NRTAVMIKDRW 55
Score = 26.6 bits (59), Expect = 6.0
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 398 WTRAETDHLFDLCHRFDL-RFIVIHDRYDTNKFPTSRTIEDLKQRY 442
WT E++ + ++ + I Y +RT +K R+
Sbjct: 14 WTVEESEWVKAGVQKYGEGNWAAISKNYPFV----NRTAVMIKDRW 55
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure
initiative, NEW YORK SGX research center for STRU
genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB:
3hyo_A* 3ibq_A*
Length = 282
Score = 28.7 bits (65), Expect = 6.8
Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 535 VHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTG 569
V + + + + R G+ + GTG
Sbjct: 181 VQRADQIGCAWLDEAGHVQYCGARRLPGH-YNGTG 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 28.9 bits (64), Expect = 7.6
Identities = 13/67 (19%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 220 KKRKEQLKRLFERTPEQVEEEQMLLAELKKI---EIRRKERDRKTQDLQKLMTAADMQAD 276
K+ +++L F+R + ++E+ L + KK E+ ++ + +L + + +
Sbjct: 358 KEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQ 417
Query: 277 NRKTDKK 283
K DK+
Sbjct: 418 TLKRDKE 424
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 29.1 bits (65), Expect = 8.1
Identities = 10/85 (11%), Positives = 26/85 (30%), Gaps = 9/85 (10%)
Query: 221 KRKEQLKRLFERTPEQVEEEQMLLAELKKIEIRRKERDRKTQDLQKLMT------AADMQ 274
+K+ ++R + E ++ ++ K QD+ + +M
Sbjct: 200 NKKDYVQRFYA---ELHIDDPIVTEYFKNQNTASIAELNSLQDIYDYLEFKYANEINEMF 256
Query: 275 ADNRKTDKKMPPKRKLTHQIRPRSL 299
++ K K + + L
Sbjct: 257 INHTGKTGKKHLKNSSYEKFKASPL 281
>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD,
tRNA (M1G37) methyltransferase, B structure funded by
NIH; 2.60A {Aquifex aeolicus} SCOP: c.116.1.4
Length = 257
Score = 28.3 bits (64), Expect = 8.1
Identities = 8/56 (14%), Positives = 22/56 (39%), Gaps = 10/56 (17%)
Query: 218 HEK----KRKEQLKRLFERTPEQVE-----EEQMLLAELKKIEIRRKERDRKTQDL 264
H+ K +++ ++ P+ + E+ +L + KE ++ + L
Sbjct: 202 HKLIELWKLWHRIENTVKKRPDLIPKDLTELEKDILNSILS-GKSFKEWLKEHKHL 256
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding
protein; NMR {Oryza sativa}
Length = 122
Score = 27.4 bits (60), Expect = 9.6
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 6/90 (6%)
Query: 146 WTRAETDHLFDLCHRFDL-RFIVIHDRYDTNKFPTSRTIEDLKQRYYFVCHTLAKMRGTE 204
+T AE + L + R+ + R N RT DLK ++ + HT +
Sbjct: 34 FTVAEVELLVEAVEHLGTGRWRDVKFRAFENV--HHRTYVDLKDKWKTLVHTASIAPQQR 91
Query: 205 CSGGNEPKLFD---AEHEKKRKEQLKRLFE 231
+L D A + R+
Sbjct: 92 RGAPVPQELLDRVLAAQAYWSVDSSGRIVT 121
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.412
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,269,704
Number of extensions: 766611
Number of successful extensions: 2090
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2004
Number of HSP's successfully gapped: 89
Length of query: 774
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 673
Effective length of database: 3,881,772
Effective search space: 2612432556
Effective search space used: 2612432556
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.6 bits)