RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15137
(774 letters)
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 199 bits (505), Expect = 2e-57
Identities = 124/195 (63%), Positives = 152/195 (77%)
Query: 533 WDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGAL 592
WDVHHGNGTQQ FY D VLY+S+HRHDDGNFFPG+G E G G+G GFN+N+AW+G L
Sbjct: 192 WDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGL 251
Query: 593 NPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQ 652
+PPMGD EYLAAFR +VMP+A+EF P +VLVSAGFDAA GHP PLGGY +S CFGYMTQ
Sbjct: 252 DPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQ 311
Query: 653 QLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPPLSQEELTRSPCLKAVETLQ 712
QLM LA G VVLALEGG+DL ++CD++EACV ALLG+ PLS+E + P L A+ +L+
Sbjct: 312 QLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLE 371
Query: 713 KTIAIQVSHWPVLKR 727
I + +W ++R
Sbjct: 372 AVIRVHSKYWGCMQR 386
Score = 29.1 bits (64), Expect = 2.0
Identities = 19/33 (57%), Positives = 27/33 (81%)
Query: 486 PEQCGTGAGLGFNINIAWSGALNPPMGDAEYLS 518
++ G G+G GFN+N+AW+G L+PPMGD EYL+
Sbjct: 230 VDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLA 262
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
63363]}
Length = 372
Score = 118 bits (295), Expect = 3e-29
Identities = 43/161 (26%), Positives = 66/161 (40%), Gaps = 7/161 (4%)
Query: 533 WDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGAL 592
D HH +G Q+ FY +V LS+H+ + F G E G G G G+N+NI
Sbjct: 166 LDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPL---- 221
Query: 593 NPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQ 652
+ D E+L A + V + F+P++ L+ G D L + LS F
Sbjct: 222 PKGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDP--LLEDYLSKFNLSNVAFLKAFN 279
Query: 653 QLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPP 693
+ + G+ V GGY ++ + L G P
Sbjct: 280 IVREVF-GEGVYLGGGGYHPYALARAWTLIWCELSGREVPE 319
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 364
Score = 112 bits (281), Expect = 2e-27
Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Query: 533 WDVHHGNGTQQIFYSDKRVLYLSIHRHDDGNFFPGTGGPIECGTGAGLGFNINIAWSGAL 592
D+HHG+G + F +V+ +S+H+ G FFPGTG + G G G +++N+
Sbjct: 164 LDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGDVSDVGLGKGRYYSVNVPI---- 218
Query: 593 NPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGYKLSPACFGYMTQ 652
+ D +Y +++ V + F+P+ V++ G D AG P+ + ++P G +
Sbjct: 219 QDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD--PMCSFNMTPVGIGKCLK 276
Query: 653 QLMTLADGKVVLALEGGYDLPSMCDSAEACVRALLGDAPPP 693
++ ++ GGY+L + +LG
Sbjct: 277 YILQWQ-LATLILGGGGYNLANTARCWTYLTGVILGKTLSS 316
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 210
Score = 30.9 bits (69), Expect = 0.45
Identities = 20/140 (14%), Positives = 47/140 (33%), Gaps = 13/140 (9%)
Query: 138 LQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYYFVCHTL 197
L+ + + + + D+ L + + R+ + + + I+ +
Sbjct: 71 LRVRKKMSGEKMPVKMIGDILSAQ-LPHMQPYIRFCSRQLNGAALIQQKTDEAPDFKEFV 129
Query: 198 AKMRGT-ECSGGNEPKLFDAEHEKKRK--EQLKRLFERTPEQVEEEQMLLAELKKIE--- 251
++ C G ++ + +K + E TPE + L L+K E
Sbjct: 130 KRLEMDPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELC 189
Query: 252 ------IRRKERDRKTQDLQ 265
+R KE + + +Q
Sbjct: 190 SQVNEGVREKENSDRLEWIQ 209
>d1go3f_ a.60.8.2 (F:) RNA polymerase II subunit RBP4 (RpoF)
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 107
Score = 28.9 bits (65), Expect = 0.69
Identities = 16/125 (12%), Positives = 38/125 (30%), Gaps = 32/125 (25%)
Query: 234 PEQVEEEQMLLAELKKIEIRRKERDRKTQDLQKLMTAADMQADNRKTDKKMPPKRKLTHQ 293
+ + E + ++E +I R + ++ + L +
Sbjct: 4 KKILGERYVTVSEAAEIMYNRAQIG-------------ELSYEQGCA---------LDYL 41
Query: 294 IRPRSLDTSVKTTAFQTLIDLGLNPIPTEEIV----THYNELRSDMVLLY------ELKQ 343
+ LD + LI LG++ +I ++LR+ E+ +
Sbjct: 42 QKFAKLDKEEAKKLVEELISLGIDEKTAVKIADILPEDLDDLRAIYYKRELPENAEEILE 101
Query: 344 ALDNY 348
+ Y
Sbjct: 102 IVRKY 106
>d1j7na3 d.166.1.1 (A:264-550) Anthrax toxin lethal factor, middle
domain {Bacillus anthracis [TaxId: 1392]}
Length = 287
Score = 30.0 bits (67), Expect = 1.0
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 14/104 (13%)
Query: 210 EPKLFDAEHE--KKRKEQLKRLFERTPEQVEEEQMLLAE----LKKIEIRRKERDRKTQD 263
EPK D H ++ KE LKR+ Q++ L E LKK++I RD +++
Sbjct: 38 EPKKDDIIHSLSQEEKELLKRI------QIDSSDFLSTEEKEFLKKLQI--DIRDSLSEE 89
Query: 264 LQKLMTAADMQADNRKTDKKMPPKRKLTHQIRPRSLDTSVKTTA 307
++L+ + + N ++K+ +KL I+P ++ ++ T
Sbjct: 90 EKELLNRIQVDSSNPLSEKEKEFLKKLKLDIQPYDINQRLQDTG 133
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine
esterase Pce (LytD), N-terminal domain {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 305
Score = 29.2 bits (64), Expect = 1.8
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 9/69 (13%)
Query: 614 KEFDPQIVLVSAGFDAAAGHPPP--------LGGYKLSPACFGYMTQQLMTLADGKVVLA 665
K P +++ ++ G +++ A Y DG V ++
Sbjct: 238 KNLSPSLIVQTSDSLPWKNGVDSEYVNWLKERGIERINAASKDYDATVFDIRKDGFVNIS 297
Query: 666 LEGGYDLPS 674
+PS
Sbjct: 298 TS-YKPIPS 305
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 28.2 bits (62), Expect = 3.7
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 216 AEHEKKRKEQLKRLFERTPE---QVEEEQMLLAELKKIEIRRKERDRKTQDLQKL 267
+ E+ +E LK+L E+ Q+ +EQ LK E + ++ ++ + +
Sbjct: 235 EQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIM 289
>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus
cereus [TaxId: 1396]}
Length = 164
Score = 27.7 bits (61), Expect = 3.9
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 216 AEHEKKRKEQLKRLFERTPEQVEEEQMLLAELKKIEIRRKERDRKTQDLQKLMT 269
A ++ + R+ T EEE+ +R R +++ + L+T
Sbjct: 114 ALSKENNPVPVPRVIPDT----EEEKESHRIAVLRAEQRHIRKAESKKVATLLT 163
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 28.3 bits (62), Expect = 4.1
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 220 KKRKEQLKRLFERTPEQVEEEQMLLAELKKIEIRRKERDRKTQDL 264
++R E+L R E +Q E + +L + + RKE DL
Sbjct: 2 RQRTEELLRCNE---QQAAELETCKEQLFQSNMERKELHNTVMDL 43
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 740
Score = 28.2 bits (63), Expect = 4.4
Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 588 WSGALNPPMGDAEYLAAFRTIVMPVAKEFDPQIVLVSAGFDAAAGHPPPLGGY 640
W+ AL D E A F +AK + AA G P + GY
Sbjct: 666 WAQALAAQTEDKELQAQF----TGIAKALTDNETKIVGELAAAQGKPVDIAGY 714
>d2nr4a1 b.45.1.4 (A:19-210) Hypothetical protein MM1853
{Methanosarcina mazei [TaxId: 2209]}
Length = 192
Score = 27.6 bits (61), Expect = 5.2
Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 7/92 (7%)
Query: 177 FPTSRTIEDLKQRYYFVCHTLAKMRGTECSGGNEPKLFDAEHEKKRKEQLKRLFERTP-- 234
F S T E++ + + + S ++ + E+ + + L E
Sbjct: 42 FKGSHTWENVLKEKCLASNVVYDPILFVRSTFSDLVPSEFEYVDAGEFKFPVLKEAIAWV 101
Query: 235 -----EQVEEEQMLLAELKKIEIRRKERDRKT 261
+Q L+A+L + ER+ K
Sbjct: 102 VFECINLRNTDQSLVADLVPLNAGFNERNIKE 133
>d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal
domains {Human (Homo sapiens), mitochondrial [TaxId:
9606]}
Length = 204
Score = 27.3 bits (60), Expect = 5.8
Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 329 NELRSDMVLLYELKQALDNYQFELQSLKHQYEAVHPGETFQIPEKIFEPTSLLSNLGDTE 388
E ++ + + + ++ L LK + + ++ E LL G+
Sbjct: 138 KEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATTRVCE---LLKYQGEHC 194
Query: 389 YLQELQSPTWT 399
L+E+Q W+
Sbjct: 195 LLKEMQQ--WS 203
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 68
Score = 25.2 bits (55), Expect = 7.4
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 6/57 (10%)
Query: 135 TEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYY 191
Y W+ E + + + F +I F +T+ + YY
Sbjct: 9 KVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIA------SFLERKTVAECVLYYY 59
Score = 25.2 bits (55), Expect = 7.4
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 6/57 (10%)
Query: 387 TEYLQELQSPTWTRAETDHLFDLCHRFDLRFIVIHDRYDTNKFPTSRTIEDLKQRYY 443
Y W+ E + + + F +I F +T+ + YY
Sbjct: 9 KVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIA------SFLERKTVAECVLYYY 59
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 27.0 bits (58), Expect = 9.3
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
Query: 220 KKRKEQLKRLFERTPEQVEEEQMLLAELKKIEIRRKERDRKTQDLQKLMTAA 271
+KR EQLKR +L+ ++RK+ K D + A
Sbjct: 8 QKRNEQLKRWIGSET-----------DLEPPVVKRKKTKVKFDDGAVFLAAC 48
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.412
Gapped
Lambda K H
0.267 0.0446 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,005,820
Number of extensions: 148482
Number of successful extensions: 421
Number of sequences better than 10.0: 1
Number of HSP's gapped: 412
Number of HSP's successfully gapped: 25
Length of query: 774
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 682
Effective length of database: 1,144,436
Effective search space: 780505352
Effective search space used: 780505352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.4 bits)