Query psy15138
Match_columns 320
No_of_seqs 450 out of 3841
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 21:34:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15138.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15138hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1143|consensus 100.0 1.3E-30 2.9E-35 237.0 10.1 220 98-319 58-282 (591)
2 KOG0463|consensus 99.9 6.2E-27 1.4E-31 213.4 5.3 212 108-319 39-252 (641)
3 KOG0927|consensus 99.9 2.7E-26 5.9E-31 218.1 6.6 253 50-315 221-518 (614)
4 COG0488 Uup ATPase components 99.9 8E-26 1.7E-30 221.7 9.2 245 52-313 155-446 (530)
5 COG5258 GTPBP1 GTPase [General 99.9 4.2E-22 9.1E-27 182.4 9.5 215 101-319 15-234 (527)
6 KOG0066|consensus 99.9 2.7E-22 5.9E-27 186.7 5.9 198 53-258 415-663 (807)
7 KOG0062|consensus 99.8 4.1E-22 9E-27 188.8 3.1 247 53-312 201-488 (582)
8 COG1126 GlnQ ABC-type polar am 99.8 4.9E-21 1.1E-25 164.3 6.7 124 184-312 7-142 (240)
9 PRK11147 ABC transporter ATPas 99.8 3.5E-20 7.5E-25 188.0 8.8 246 52-312 158-446 (635)
10 PRK10636 putative ABC transpor 99.8 5.8E-20 1.3E-24 186.2 9.6 244 52-312 151-436 (638)
11 COG1116 TauB ABC-type nitrate/ 99.8 5.7E-20 1.2E-24 161.6 7.2 121 187-312 11-136 (248)
12 COG0050 TufB GTPases - transla 99.8 6.1E-20 1.3E-24 163.2 6.6 89 11-101 72-164 (394)
13 COG3842 PotA ABC-type spermidi 99.8 5.1E-20 1.1E-24 171.3 6.1 132 175-312 5-142 (352)
14 COG1125 OpuBA ABC-type proline 99.8 7.7E-20 1.7E-24 160.3 6.5 129 176-313 2-142 (309)
15 COG1120 FepC ABC-type cobalami 99.8 4E-20 8.6E-25 165.2 3.1 129 185-315 8-147 (258)
16 COG1135 AbcC ABC-type metal io 99.8 2.2E-19 4.8E-24 161.6 6.8 132 176-312 2-147 (339)
17 COG3839 MalK ABC-type sugar tr 99.8 2.1E-19 4.5E-24 166.4 6.8 130 175-312 3-139 (338)
18 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 5.5E-20 1.2E-24 163.5 2.8 135 175-314 4-147 (254)
19 PLN03073 ABC transporter F fam 99.8 9.4E-19 2E-23 178.6 7.1 245 52-312 346-633 (718)
20 COG2884 FtsE Predicted ATPase 99.7 2E-18 4.3E-23 145.3 7.1 129 176-312 2-143 (223)
21 COG1136 SalX ABC-type antimicr 99.7 7.4E-19 1.6E-23 154.1 4.6 132 178-313 4-149 (226)
22 COG1118 CysA ABC-type sulfate/ 99.7 1.3E-18 2.9E-23 156.2 5.5 122 190-313 13-144 (345)
23 COG5256 TEF1 Translation elong 99.7 5E-18 1.1E-22 158.0 7.5 90 11-102 82-183 (428)
24 KOG0460|consensus 99.7 7.1E-18 1.5E-22 152.7 6.5 89 11-101 114-206 (449)
25 COG4181 Predicted ABC-type tra 99.7 7.8E-18 1.7E-22 139.6 6.0 134 175-312 6-152 (228)
26 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 2.5E-17 5.4E-22 164.7 9.5 245 52-312 163-449 (552)
27 PRK11819 putative ABC transpor 99.7 7.7E-17 1.7E-21 161.3 12.2 245 52-312 165-451 (556)
28 PRK15064 ABC transporter ATP-b 99.7 1E-16 2.2E-21 159.6 12.8 244 52-312 157-444 (530)
29 COG1122 CbiO ABC-type cobalt t 99.7 2.7E-17 5.9E-22 146.3 7.3 133 175-314 3-146 (235)
30 COG1124 DppF ABC-type dipeptid 99.7 1.5E-17 3.2E-22 145.5 4.8 134 175-313 3-148 (252)
31 COG3638 ABC-type phosphate/pho 99.7 2.2E-17 4.8E-22 143.5 5.9 134 175-313 3-154 (258)
32 COG3276 SelB Selenocysteine-sp 99.7 1.9E-16 4.1E-21 148.5 9.4 111 12-128 48-161 (447)
33 COG1127 Ttg2A ABC-type transpo 99.7 1.1E-16 2.4E-21 139.6 7.2 131 174-312 7-151 (263)
34 COG3840 ThiQ ABC-type thiamine 99.7 1E-16 2.2E-21 134.2 6.1 110 201-313 24-136 (231)
35 COG0411 LivG ABC-type branched 99.6 7.4E-17 1.6E-21 141.2 3.2 126 184-311 9-154 (250)
36 COG4175 ProV ABC-type proline/ 99.6 3.1E-16 6.7E-21 141.5 5.4 115 194-312 43-170 (386)
37 TIGR02314 ABC_MetN D-methionin 99.6 1.7E-16 3.7E-21 149.2 3.8 133 176-312 2-146 (343)
38 COG4525 TauB ABC-type taurine 99.6 4.1E-16 8.9E-21 132.0 5.5 122 186-312 10-138 (259)
39 COG1123 ATPase components of v 99.6 1.4E-15 3.1E-20 147.7 9.3 140 173-314 278-437 (539)
40 PTZ00327 eukaryotic translatio 99.6 9.5E-16 2.1E-20 148.9 7.4 110 14-127 117-231 (460)
41 TIGR03269 met_CoM_red_A2 methy 99.6 2.4E-15 5.2E-20 149.5 10.5 220 53-312 171-433 (520)
42 PRK11432 fbpC ferric transport 99.6 6.4E-16 1.4E-20 145.9 5.7 130 175-312 6-142 (351)
43 PRK09452 potA putrescine/sperm 99.6 8.9E-16 1.9E-20 146.0 6.6 131 174-312 13-150 (375)
44 TIGR03265 PhnT2 putative 2-ami 99.6 5.8E-16 1.3E-20 146.3 5.2 130 175-312 4-140 (353)
45 KOG0458|consensus 99.6 1.3E-15 2.8E-20 146.7 7.5 100 11-112 252-364 (603)
46 PRK11650 ugpC glycerol-3-phosp 99.6 6.5E-16 1.4E-20 146.2 5.1 130 176-312 4-140 (356)
47 COG4559 ABC-type hemin transpo 99.6 1.4E-15 3E-20 130.3 5.9 123 185-312 7-141 (259)
48 PRK13537 nodulation ABC transp 99.6 1.4E-15 3.1E-20 141.2 5.1 128 175-311 7-143 (306)
49 TIGR03258 PhnT 2-aminoethylpho 99.6 1.6E-15 3.5E-20 143.6 5.1 130 175-312 5-143 (362)
50 cd03226 ABC_cobalt_CbiO_domain 99.6 2.3E-15 5.1E-20 131.7 5.6 114 192-312 13-132 (205)
51 KOG0463|consensus 99.6 4.2E-15 9.2E-20 136.3 7.2 99 3-105 209-312 (641)
52 COG4604 CeuD ABC-type enteroch 99.6 8.6E-16 1.9E-20 130.2 2.2 128 186-317 8-146 (252)
53 cd03261 ABC_Org_Solvent_Resist 99.6 2.6E-15 5.6E-20 134.2 5.5 121 188-312 9-142 (235)
54 COG1117 PstB ABC-type phosphat 99.6 3.4E-15 7.3E-20 128.1 5.8 129 184-313 12-156 (253)
55 PRK09536 btuD corrinoid ABC tr 99.6 1.9E-15 4.2E-20 144.7 4.8 131 175-312 3-145 (402)
56 PRK10851 sulfate/thiosulfate t 99.6 3.1E-15 6.8E-20 141.4 6.0 120 189-312 12-142 (353)
57 COG1162 Predicted GTPases [Gen 99.6 3.7E-14 8.1E-19 128.7 12.6 177 32-301 76-257 (301)
58 TIGR01186 proV glycine betaine 99.6 1.4E-15 3.1E-20 143.9 3.5 118 191-312 5-135 (363)
59 COG1131 CcmA ABC-type multidru 99.6 2.5E-15 5.3E-20 138.7 4.9 123 184-311 9-141 (293)
60 cd03265 ABC_DrrA DrrA is the A 99.6 2.6E-15 5.7E-20 132.8 4.8 121 188-312 9-137 (220)
61 cd04165 GTPBP1_like GTPBP1-lik 99.6 1.6E-14 3.4E-19 128.3 9.7 100 4-105 73-177 (224)
62 PRK11607 potG putrescine trans 99.6 2.8E-15 6E-20 142.8 5.2 130 175-312 19-155 (377)
63 PRK11000 maltose/maltodextrin 99.6 3E-15 6.5E-20 142.4 5.3 129 176-312 4-139 (369)
64 COG4598 HisP ABC-type histidin 99.6 1.6E-15 3.4E-20 126.9 2.8 124 186-313 13-159 (256)
65 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.6 4.1E-15 8.9E-20 131.3 5.7 117 192-312 17-146 (218)
66 COG0410 LivF ABC-type branched 99.6 3E-15 6.4E-20 130.1 4.6 124 185-311 9-141 (237)
67 PRK11153 metN DL-methionine tr 99.6 2.2E-15 4.7E-20 142.1 4.0 133 176-312 2-146 (343)
68 PRK09700 D-allose transporter 99.6 1.8E-14 3.9E-19 142.9 10.7 228 52-312 147-415 (510)
69 COG1134 TagH ABC-type polysacc 99.5 3.1E-15 6.6E-20 131.2 4.6 107 190-310 38-151 (249)
70 PRK13651 cobalt transporter AT 99.5 3.5E-15 7.6E-20 138.5 5.0 133 176-312 3-171 (305)
71 cd03259 ABC_Carb_Solutes_like 99.5 3.3E-15 7.2E-20 131.5 4.6 121 188-312 9-136 (213)
72 PRK11629 lolD lipoprotein tran 99.5 3.4E-15 7.3E-20 133.3 4.6 134 175-312 5-151 (233)
73 PRK13536 nodulation factor exp 99.5 3.9E-15 8.5E-20 140.0 5.2 130 175-312 41-178 (340)
74 cd03235 ABC_Metallic_Cations A 99.5 4.4E-15 9.6E-20 130.7 5.2 121 188-312 8-138 (213)
75 TIGR01188 drrA daunorubicin re 99.5 4E-15 8.7E-20 138.0 4.9 117 191-312 5-130 (302)
76 PRK13637 cbiO cobalt transport 99.5 4.2E-15 9.1E-20 136.9 4.9 133 176-312 3-150 (287)
77 TIGR00960 3a0501s02 Type II (G 99.5 4.7E-15 1E-19 130.8 4.9 116 193-312 17-144 (216)
78 PRK13549 xylose transporter AT 99.5 4.3E-14 9.2E-19 140.1 12.0 228 53-312 146-411 (506)
79 TIGR02211 LolD_lipo_ex lipopro 99.5 5.2E-15 1.1E-19 130.9 4.9 116 193-312 19-147 (221)
80 cd03301 ABC_MalK_N The N-termi 99.5 4.7E-15 1E-19 130.4 4.6 120 189-312 10-136 (213)
81 TIGR01288 nodI ATP-binding ABC 99.5 5.5E-15 1.2E-19 137.1 5.2 130 175-312 4-141 (303)
82 PRK15134 microcin C ABC transp 99.5 1.2E-14 2.6E-19 144.8 7.8 227 52-312 158-431 (529)
83 PF00009 GTP_EFTU: Elongation 99.5 1.4E-14 3.1E-19 125.0 7.1 112 12-126 68-184 (188)
84 TIGR03608 L_ocin_972_ABC putat 99.5 5.5E-15 1.2E-19 129.3 4.5 123 186-312 5-140 (206)
85 cd03296 ABC_CysA_sulfate_impor 99.5 9.3E-15 2E-19 131.0 6.1 132 176-312 3-142 (239)
86 cd03266 ABC_NatA_sodium_export 99.5 3.9E-15 8.4E-20 131.5 3.5 116 193-312 19-142 (218)
87 PRK10512 selenocysteinyl-tRNA- 99.5 1.8E-14 3.9E-19 144.9 8.5 110 14-126 51-163 (614)
88 cd03219 ABC_Mj1267_LivG_branch 99.5 7.6E-15 1.7E-19 131.2 5.3 123 189-312 10-149 (236)
89 COG1119 ModF ABC-type molybden 99.5 3.9E-15 8.4E-20 130.5 3.2 137 174-315 30-180 (257)
90 cd03269 ABC_putative_ATPase Th 99.5 4.4E-15 9.5E-20 130.4 3.5 117 191-312 12-134 (210)
91 COG5257 GCD11 Translation init 99.5 2E-14 4.4E-19 129.6 7.6 90 14-105 86-179 (415)
92 COG1137 YhbG ABC-type (unclass 99.5 6.8E-16 1.5E-20 131.1 -1.8 127 184-312 9-145 (243)
93 PRK11248 tauB taurine transpor 99.5 7.9E-15 1.7E-19 132.8 5.0 114 192-312 14-134 (255)
94 cd03293 ABC_NrtD_SsuB_transpor 99.5 8E-15 1.7E-19 129.8 4.9 114 192-311 17-136 (220)
95 PRK10762 D-ribose transporter 99.5 4.1E-14 8.9E-19 140.0 10.4 128 175-312 257-401 (501)
96 cd03262 ABC_HisP_GlnQ_permease 99.5 8.9E-15 1.9E-19 128.6 5.1 121 188-312 9-141 (213)
97 PRK15079 oligopeptide ABC tran 99.5 6.1E-15 1.3E-19 138.3 4.3 135 174-312 7-167 (331)
98 cd03218 ABC_YhbG The ABC trans 99.5 9.9E-15 2.1E-19 130.1 5.4 121 188-312 9-139 (232)
99 PRK13647 cbiO cobalt transport 99.5 4.1E-15 8.8E-20 136.1 3.0 131 175-312 4-144 (274)
100 cd03263 ABC_subfamily_A The AB 99.5 4.9E-15 1.1E-19 131.0 3.4 117 192-312 15-139 (220)
101 cd03225 ABC_cobalt_CbiO_domain 99.5 9.6E-15 2.1E-19 128.3 5.1 117 192-312 14-140 (211)
102 PRK10584 putative ABC transpor 99.5 8.7E-15 1.9E-19 130.2 4.9 134 175-312 6-152 (228)
103 PRK10261 glutathione transport 99.5 1E-14 2.3E-19 147.7 5.9 254 52-312 170-469 (623)
104 PRK13650 cbiO cobalt transport 99.5 8.6E-15 1.9E-19 134.3 4.6 132 175-311 4-145 (279)
105 PRK10908 cell division protein 99.5 1.2E-14 2.5E-19 128.9 5.3 117 192-312 15-143 (222)
106 PRK13643 cbiO cobalt transport 99.5 8.8E-15 1.9E-19 134.8 4.6 133 176-312 2-150 (288)
107 TIGR01166 cbiO cobalt transpor 99.5 5E-15 1.1E-19 128.1 2.7 116 193-312 6-133 (190)
108 TIGR02633 xylG D-xylose ABC tr 99.5 6.3E-14 1.4E-18 138.7 10.9 228 53-312 144-409 (500)
109 PRK13646 cbiO cobalt transport 99.5 8.4E-15 1.8E-19 134.8 4.3 133 176-312 3-151 (286)
110 PRK15439 autoinducer 2 ABC tra 99.5 7.2E-14 1.6E-18 138.6 11.1 231 53-312 143-409 (510)
111 cd03258 ABC_MetN_methionine_tr 99.5 1.3E-14 2.7E-19 129.5 5.0 116 193-312 19-146 (233)
112 COG2895 CysN GTPases - Sulfate 99.5 2.4E-14 5.2E-19 130.7 6.8 89 10-100 82-175 (431)
113 PRK13638 cbiO cobalt transport 99.5 7.5E-15 1.6E-19 134.1 3.5 129 176-312 2-142 (271)
114 PRK13634 cbiO cobalt transport 99.5 9.3E-15 2E-19 134.8 4.1 133 176-312 3-151 (290)
115 TIGR03522 GldA_ABC_ATP gliding 99.5 1.2E-14 2.7E-19 134.7 4.9 129 176-312 3-139 (301)
116 TIGR02315 ABC_phnC phosphonate 99.5 2.1E-14 4.6E-19 128.9 6.1 120 192-312 15-151 (243)
117 cd03256 ABC_PhnC_transporter A 99.5 1.9E-14 4.2E-19 128.9 5.8 119 192-312 14-150 (241)
118 TIGR02673 FtsE cell division A 99.5 1.6E-14 3.4E-19 127.2 4.9 117 192-312 15-143 (214)
119 COG4608 AppF ABC-type oligopep 99.5 3.2E-14 6.9E-19 127.0 6.8 105 175-314 4-117 (268)
120 PRK13633 cobalt transporter AT 99.5 9.4E-15 2E-19 134.1 3.4 134 175-312 4-150 (280)
121 cd03264 ABC_drug_resistance_li 99.5 1.4E-14 3E-19 127.4 4.2 117 191-312 12-136 (211)
122 COG4619 ABC-type uncharacteriz 99.5 1.2E-14 2.5E-19 120.5 3.5 117 191-312 15-139 (223)
123 TIGR03864 PQQ_ABC_ATP ABC tran 99.5 1.8E-14 3.9E-19 128.9 4.7 118 191-312 13-138 (236)
124 PRK13635 cbiO cobalt transport 99.5 1.3E-14 2.7E-19 133.2 3.7 131 175-311 5-145 (279)
125 PRK11288 araG L-arabinose tran 99.5 1.7E-13 3.7E-18 135.7 12.0 118 194-312 268-402 (501)
126 PRK11247 ssuB aliphatic sulfon 99.5 2.9E-14 6.4E-19 129.2 6.0 124 174-312 11-139 (257)
127 COG0444 DppD ABC-type dipeptid 99.5 2.9E-15 6.3E-20 136.4 -0.6 140 177-317 3-164 (316)
128 PRK10938 putative molybdenum t 99.5 8.6E-14 1.9E-18 137.4 9.8 233 53-312 138-407 (490)
129 PRK13652 cbiO cobalt transport 99.5 1.5E-14 3.2E-19 132.6 3.8 131 175-312 3-143 (277)
130 cd03257 ABC_NikE_OppD_transpor 99.5 2.6E-14 5.6E-19 126.9 5.3 117 193-312 19-151 (228)
131 PRK09493 glnQ glutamine ABC tr 99.5 2.6E-14 5.6E-19 128.1 5.2 117 192-312 14-142 (240)
132 PRK11831 putative ABC transpor 99.5 2.6E-14 5.5E-19 130.5 5.1 130 175-312 7-149 (269)
133 cd03292 ABC_FtsE_transporter F 99.5 1.7E-14 3.8E-19 126.9 3.8 117 192-312 14-142 (214)
134 PRK10575 iron-hydroxamate tran 99.5 3.7E-14 7.9E-19 129.1 6.1 134 174-312 10-153 (265)
135 TIGR02982 heterocyst_DevA ABC 99.5 1.7E-14 3.8E-19 127.6 3.7 117 192-312 18-147 (220)
136 COG3845 ABC-type uncharacteriz 99.5 7.8E-14 1.7E-18 132.7 8.2 128 184-312 9-146 (501)
137 cd03294 ABC_Pro_Gly_Bertaine T 99.5 1.7E-14 3.6E-19 131.7 3.6 120 189-312 34-166 (269)
138 PRK13644 cbiO cobalt transport 99.5 1.5E-14 3.2E-19 132.4 3.2 116 193-312 16-142 (274)
139 COG4152 ABC-type uncharacteriz 99.5 2.6E-14 5.7E-19 125.0 4.5 122 184-309 7-133 (300)
140 PRK13641 cbiO cobalt transport 99.5 2.2E-14 4.7E-19 132.2 4.3 133 176-312 3-151 (287)
141 PTZ00141 elongation factor 1- 99.5 4.3E-14 9.3E-19 137.5 6.5 88 12-101 83-184 (446)
142 cd03295 ABC_OpuCA_Osmoprotecti 99.5 2.2E-14 4.7E-19 128.9 4.1 117 192-312 14-141 (242)
143 PRK09473 oppD oligopeptide tra 99.5 2.4E-14 5.3E-19 134.2 4.6 137 173-313 10-168 (330)
144 PRK13639 cbiO cobalt transport 99.5 1.5E-14 3.2E-19 132.5 3.0 116 193-312 16-143 (275)
145 PRK10253 iron-enterobactin tra 99.5 5.2E-14 1.1E-18 128.1 6.6 132 175-312 7-149 (265)
146 TIGR03415 ABC_choXWV_ATP choli 99.5 1.9E-14 4E-19 137.0 3.7 120 189-312 34-170 (382)
147 cd03268 ABC_BcrA_bacitracin_re 99.5 1.6E-14 3.5E-19 126.6 3.0 117 189-312 10-132 (208)
148 COG4555 NatA ABC-type Na+ tran 99.5 9.5E-15 2.1E-19 124.3 1.5 117 191-311 14-138 (245)
149 COG4167 SapF ABC-type antimicr 99.5 2.8E-14 6E-19 119.8 4.3 118 192-311 26-154 (267)
150 PRK13548 hmuV hemin importer A 99.5 4.7E-14 1E-18 127.9 6.1 129 176-312 3-140 (258)
151 PRK10895 lipopolysaccharide AB 99.5 5E-14 1.1E-18 126.4 6.2 130 175-312 3-143 (241)
152 PRK13631 cbiO cobalt transport 99.5 3.4E-14 7.3E-19 132.7 5.3 135 174-312 20-182 (320)
153 PRK13538 cytochrome c biogenes 99.5 2.5E-14 5.5E-19 125.2 4.1 118 189-312 11-135 (204)
154 KOG1143|consensus 99.5 7.4E-14 1.6E-18 128.1 7.2 91 12-105 247-342 (591)
155 PRK11308 dppF dipeptide transp 99.5 3.2E-14 6.9E-19 133.3 5.0 135 174-312 4-160 (327)
156 cd03224 ABC_TM1139_LivF_branch 99.5 2.3E-14 5E-19 126.8 3.7 117 192-312 13-138 (222)
157 TIGR00475 selB selenocysteine- 99.5 1.2E-13 2.5E-18 138.5 9.2 111 14-127 50-164 (581)
158 PRK11264 putative amino-acid A 99.5 4.3E-14 9.3E-19 127.4 5.5 129 176-312 4-150 (250)
159 TIGR03411 urea_trans_UrtD urea 99.5 6.2E-14 1.3E-18 125.8 6.5 132 176-312 3-149 (242)
160 PRK13636 cbiO cobalt transport 99.5 3.4E-14 7.4E-19 130.6 4.9 131 175-312 5-147 (283)
161 PRK10070 glycine betaine trans 99.5 3E-14 6.4E-19 136.5 4.5 116 193-312 42-170 (400)
162 PRK10762 D-ribose transporter 99.5 4.6E-14 9.9E-19 139.7 6.0 130 175-312 4-147 (501)
163 PRK01889 GTPase RsgA; Reviewed 99.5 3.5E-13 7.5E-18 127.6 11.6 121 33-240 110-232 (356)
164 PRK11231 fecE iron-dicitrate t 99.5 5.5E-14 1.2E-18 127.2 6.0 131 176-312 3-144 (255)
165 PRK11022 dppD dipeptide transp 99.5 3.6E-14 7.7E-19 132.9 4.9 135 175-313 3-160 (326)
166 COG4148 ModC ABC-type molybdat 99.5 4.9E-14 1.1E-18 125.4 5.4 100 203-312 25-134 (352)
167 cd03298 ABC_ThiQ_thiamine_tran 99.5 7.3E-14 1.6E-18 122.7 6.4 108 202-312 24-134 (211)
168 PRK11300 livG leucine/isoleuci 99.5 6.8E-14 1.5E-18 126.5 6.1 133 175-312 5-159 (255)
169 cd03260 ABC_PstB_phosphate_tra 99.5 3.8E-14 8.2E-19 126.0 4.3 120 190-312 11-147 (227)
170 COG4161 ArtP ABC-type arginine 99.5 6.8E-14 1.5E-18 115.3 5.4 126 184-313 7-148 (242)
171 COG5258 GTPBP1 GTPase [General 99.5 7.4E-14 1.6E-18 128.6 6.2 84 12-97 199-286 (527)
172 TIGR01184 ntrCD nitrate transp 99.5 3.1E-14 6.7E-19 127.0 3.5 106 202-312 11-120 (230)
173 PLN00043 elongation factor 1-a 99.5 9.4E-14 2E-18 135.1 7.1 89 11-101 82-184 (447)
174 PRK11124 artP arginine transpo 99.5 5.4E-14 1.2E-18 126.2 5.0 129 176-312 3-147 (242)
175 PLN03126 Elongation factor Tu; 99.5 7.9E-14 1.7E-18 136.3 6.5 89 11-101 141-233 (478)
176 cd03234 ABCG_White The White s 99.5 4.6E-14 9.9E-19 125.4 4.3 136 176-312 4-149 (226)
177 PRK15056 manganese/iron transp 99.5 9.8E-14 2.1E-18 126.8 6.6 133 176-312 7-148 (272)
178 TIGR01189 ccmA heme ABC export 99.5 3.2E-14 6.9E-19 123.9 3.2 117 189-312 10-133 (198)
179 TIGR03873 F420-0_ABC_ATP propo 99.5 5.3E-14 1.1E-18 127.4 4.7 123 189-312 11-143 (256)
180 TIGR03005 ectoine_ehuA ectoine 99.4 5.3E-14 1.1E-18 127.1 4.7 120 189-312 10-152 (252)
181 PRK10982 galactose/methyl gala 99.4 3.8E-13 8.2E-18 132.9 10.9 59 174-239 249-310 (491)
182 PRK15093 antimicrobial peptide 99.4 4E-14 8.8E-19 132.8 3.7 138 175-313 3-165 (330)
183 PRK13640 cbiO cobalt transport 99.4 7.1E-14 1.5E-18 128.4 5.1 131 175-311 5-148 (282)
184 TIGR00972 3a0107s01c2 phosphat 99.4 5.4E-14 1.2E-18 126.7 4.2 117 192-312 14-150 (247)
185 PRK13632 cbiO cobalt transport 99.4 6E-14 1.3E-18 128.2 4.5 132 175-312 7-148 (271)
186 PRK14250 phosphate ABC transpo 99.4 1.1E-13 2.4E-18 124.3 6.1 126 176-312 4-137 (241)
187 PRK09700 D-allose transporter 99.4 1.3E-13 2.9E-18 136.7 7.1 133 175-312 5-151 (510)
188 TIGR02142 modC_ABC molybdenum 99.4 9.6E-14 2.1E-18 131.5 5.8 111 197-312 15-137 (354)
189 TIGR01277 thiQ thiamine ABC tr 99.4 7.6E-14 1.6E-18 122.9 4.8 114 196-312 15-134 (213)
190 PRK10261 glutathione transport 99.4 4.9E-14 1.1E-18 142.9 4.0 135 175-313 12-175 (623)
191 PRK13549 xylose transporter AT 99.4 1.1E-13 2.4E-18 137.2 6.4 130 175-312 5-149 (506)
192 cd03231 ABC_CcmA_heme_exporter 99.4 1.2E-13 2.6E-18 120.6 5.9 114 189-311 10-130 (201)
193 PRK13543 cytochrome c biogenes 99.4 7.1E-14 1.5E-18 123.3 4.4 129 174-312 10-143 (214)
194 PRK11288 araG L-arabinose tran 99.4 9.8E-14 2.1E-18 137.4 5.9 130 175-312 4-146 (501)
195 PRK13547 hmuV hemin importer A 99.4 9.7E-14 2.1E-18 126.9 5.4 122 188-312 10-151 (272)
196 PRK11144 modC molybdate transp 99.4 1E-13 2.2E-18 131.2 5.7 102 202-312 24-134 (352)
197 PRK10771 thiQ thiamine transpo 99.4 1.1E-13 2.3E-18 123.6 5.2 108 202-312 25-135 (232)
198 PRK15112 antimicrobial peptide 99.4 4.9E-14 1.1E-18 128.4 3.2 134 175-312 4-155 (267)
199 PRK10982 galactose/methyl gala 99.4 1.3E-13 2.9E-18 136.1 6.4 127 185-312 4-140 (491)
200 PRK13642 cbiO cobalt transport 99.4 8.6E-14 1.9E-18 127.5 4.7 133 175-312 4-146 (277)
201 TIGR02769 nickel_nikE nickel i 99.4 6.5E-14 1.4E-18 127.5 3.8 117 192-312 24-156 (265)
202 PRK10247 putative ABC transpor 99.4 1.1E-13 2.3E-18 123.1 5.0 129 175-312 7-143 (225)
203 PRK10619 histidine/lysine/argi 99.4 1.2E-13 2.6E-18 125.1 5.1 129 176-312 6-158 (257)
204 COG2274 SunT ABC-type bacterio 99.4 8.8E-14 1.9E-18 141.3 4.6 95 175-272 471-572 (709)
205 PRK13648 cbiO cobalt transport 99.4 1.3E-13 2.9E-18 125.7 5.4 132 175-312 7-148 (269)
206 PRK13649 cbiO cobalt transport 99.4 9E-14 2E-18 127.5 4.2 116 193-312 21-151 (280)
207 COG1123 ATPase components of v 99.4 4.4E-14 9.6E-19 137.4 2.2 139 175-317 5-165 (539)
208 PRK15439 autoinducer 2 ABC tra 99.4 2.2E-13 4.7E-18 135.2 7.1 127 175-312 11-146 (510)
209 PRK12736 elongation factor Tu; 99.4 4E-13 8.6E-18 129.1 8.7 87 12-100 73-163 (394)
210 PRK13540 cytochrome c biogenes 99.4 1.7E-13 3.7E-18 119.5 5.6 123 177-311 3-132 (200)
211 TIGR00968 3a0106s01 sulfate AB 99.4 1.2E-13 2.6E-18 123.7 4.7 119 189-311 10-135 (237)
212 PRK13539 cytochrome c biogenes 99.4 8.4E-14 1.8E-18 122.1 3.4 125 176-311 3-132 (207)
213 TIGR03740 galliderm_ABC gallid 99.4 8.3E-14 1.8E-18 123.5 3.3 113 191-312 12-130 (223)
214 PRK14259 phosphate ABC transpo 99.4 2.7E-13 5.8E-18 123.8 6.7 133 174-312 12-160 (269)
215 TIGR02868 CydC thiol reductant 99.4 1.6E-13 3.4E-18 136.7 5.6 91 176-270 335-431 (529)
216 PRK10744 pstB phosphate transp 99.4 3E-13 6.6E-18 122.7 6.8 135 173-312 11-162 (260)
217 cd03267 ABC_NatA_like Similar 99.4 1E-13 2.2E-18 124.1 3.5 120 189-312 31-159 (236)
218 cd03300 ABC_PotA_N PotA is an 99.4 1.7E-13 3.6E-18 122.3 4.7 120 189-312 10-136 (232)
219 PRK09984 phosphonate/organopho 99.4 2.7E-13 5.8E-18 123.2 6.1 132 175-312 4-158 (262)
220 PRK14247 phosphate ABC transpo 99.4 2.7E-13 5.8E-18 122.3 5.6 129 176-312 4-152 (250)
221 PRK11614 livF leucine/isoleuci 99.4 2.6E-13 5.7E-18 121.4 5.5 130 175-312 5-143 (237)
222 TIGR03410 urea_trans_UrtE urea 99.4 2E-13 4.3E-18 121.6 4.6 119 189-312 10-137 (230)
223 cd01884 EF_Tu EF-Tu subfamily. 99.4 5.8E-13 1.3E-17 115.8 7.3 87 12-100 63-153 (195)
224 PRK14241 phosphate transporter 99.4 2.4E-13 5.1E-18 123.3 5.0 129 176-312 5-154 (258)
225 PRK11701 phnK phosphonate C-P 99.4 2.2E-13 4.8E-18 123.5 4.6 130 175-312 6-157 (258)
226 PRK09544 znuC high-affinity zi 99.4 2.9E-13 6.3E-18 122.3 5.3 119 175-312 4-126 (251)
227 PRK13645 cbiO cobalt transport 99.4 1.3E-13 2.8E-18 127.1 3.0 133 176-312 7-156 (289)
228 TIGR02034 CysN sulfate adenyly 99.4 3.5E-13 7.5E-18 129.9 6.0 88 12-101 78-170 (406)
229 cd03299 ABC_ModC_like Archeal 99.4 2.1E-13 4.5E-18 122.0 4.1 114 194-311 14-134 (235)
230 COG4586 ABC-type uncharacteriz 99.4 1.1E-13 2.4E-18 122.8 2.3 118 192-313 37-163 (325)
231 PRK14242 phosphate transporter 99.4 7.4E-13 1.6E-17 119.6 7.7 132 173-312 4-155 (253)
232 PRK14267 phosphate ABC transpo 99.4 2.8E-13 6E-18 122.4 4.8 133 175-312 4-155 (253)
233 TIGR02324 CP_lyasePhnL phospho 99.4 3.5E-13 7.6E-18 119.5 5.4 116 193-312 22-155 (224)
234 cd03248 ABCC_TAP TAP, the Tran 99.4 2.7E-13 5.8E-18 120.4 4.6 134 175-311 11-155 (226)
235 PRK10938 putative molybdenum t 99.4 4.1E-13 8.9E-18 132.6 6.4 130 175-312 3-141 (490)
236 PRK14273 phosphate ABC transpo 99.4 3.2E-13 6.9E-18 122.1 5.1 133 175-312 7-156 (254)
237 PRK14269 phosphate ABC transpo 99.4 4.2E-13 9.1E-18 120.8 5.8 122 189-312 12-148 (246)
238 COG1129 MglA ABC-type sugar tr 99.4 5.8E-13 1.3E-17 128.8 7.0 130 174-311 7-150 (500)
239 PRK14235 phosphate transporter 99.4 3.4E-13 7.4E-18 122.9 5.1 131 174-312 18-169 (267)
240 cd03214 ABC_Iron-Siderophores_ 99.4 3E-13 6.4E-18 116.1 4.2 50 189-239 9-61 (180)
241 PLN03127 Elongation factor Tu; 99.4 4.9E-13 1.1E-17 130.0 6.3 85 11-97 121-209 (447)
242 PRK15134 microcin C ABC transp 99.4 3.9E-13 8.5E-18 133.9 5.7 134 175-312 5-162 (529)
243 KOG0058|consensus 99.4 8.7E-13 1.9E-17 130.7 8.0 134 175-311 465-609 (716)
244 TIGR00485 EF-Tu translation el 99.4 8.1E-13 1.8E-17 127.0 7.4 87 12-100 73-163 (394)
245 cd03297 ABC_ModC_molybdenum_tr 99.4 5.5E-13 1.2E-17 117.5 5.7 104 203-311 24-136 (214)
246 TIGR01978 sufC FeS assembly AT 99.4 5.8E-13 1.2E-17 119.5 5.7 124 188-312 9-150 (243)
247 COG4778 PhnL ABC-type phosphon 99.4 7.9E-13 1.7E-17 109.9 5.9 134 175-312 4-158 (235)
248 TIGR02323 CP_lyasePhnK phospho 99.4 3.5E-13 7.5E-18 121.8 4.1 59 176-239 4-65 (253)
249 cd03252 ABCC_Hemolysin The ABC 99.4 6.2E-13 1.3E-17 118.9 5.6 118 193-312 16-144 (237)
250 cd03251 ABCC_MsbA MsbA is an e 99.4 5.6E-13 1.2E-17 118.9 5.3 118 193-312 16-144 (234)
251 PRK14270 phosphate ABC transpo 99.4 5.8E-13 1.3E-17 120.2 5.3 133 175-312 4-153 (251)
252 PRK13541 cytochrome c biogenes 99.4 3.5E-13 7.5E-18 117.1 3.6 103 201-312 25-129 (195)
253 PRK13409 putative ATPase RIL; 99.4 3.3E-12 7.3E-17 128.4 10.9 118 174-312 339-459 (590)
254 PRK14268 phosphate ABC transpo 99.4 5.4E-13 1.2E-17 121.0 4.8 133 174-311 11-159 (258)
255 PRK14254 phosphate ABC transpo 99.4 7.1E-13 1.5E-17 122.0 5.6 129 175-312 39-186 (285)
256 KOG0057|consensus 99.4 6E-13 1.3E-17 127.9 4.9 93 175-272 351-450 (591)
257 COG4136 ABC-type uncharacteriz 99.3 1.5E-12 3.3E-17 106.1 6.5 110 199-312 25-140 (213)
258 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.3 5.6E-13 1.2E-17 118.4 4.3 114 188-312 31-148 (224)
259 TIGR03269 met_CoM_red_A2 methy 99.3 5.9E-13 1.3E-17 132.4 4.8 50 187-237 8-62 (520)
260 PRK10419 nikE nickel transport 99.3 6.3E-13 1.4E-17 121.2 4.6 134 175-312 3-157 (268)
261 PRK12735 elongation factor Tu; 99.3 1.7E-12 3.8E-17 124.7 7.8 85 12-98 73-161 (396)
262 TIGR03797 NHPM_micro_ABC2 NHPM 99.3 7.5E-13 1.6E-17 135.8 5.6 93 175-270 451-550 (686)
263 PRK10418 nikD nickel transport 99.3 4.2E-13 9E-18 121.4 3.3 127 175-312 4-146 (254)
264 TIGR03771 anch_rpt_ABC anchore 99.3 7E-13 1.5E-17 117.7 4.6 111 201-312 5-119 (223)
265 TIGR02770 nickel_nikD nickel i 99.3 4.8E-13 1E-17 119.2 3.6 107 202-312 12-131 (230)
266 TIGR02633 xylG D-xylose ABC tr 99.3 9.1E-13 2E-17 130.4 5.9 120 189-312 11-147 (500)
267 CHL00071 tufA elongation facto 99.3 1.3E-12 2.8E-17 126.1 6.8 87 12-100 73-163 (409)
268 PRK14272 phosphate ABC transpo 99.3 1E-12 2.2E-17 118.6 5.6 133 175-312 4-154 (252)
269 PRK14244 phosphate ABC transpo 99.3 8E-13 1.7E-17 119.3 4.9 120 189-312 15-155 (251)
270 cd03250 ABCC_MRP_domain1 Domai 99.3 1E-12 2.2E-17 114.9 5.3 45 193-238 19-66 (204)
271 TIGR00958 3a01208 Conjugate Tr 99.3 1E-12 2.2E-17 135.2 5.9 95 175-271 478-579 (711)
272 PRK14237 phosphate transporter 99.3 1.6E-12 3.4E-17 118.5 6.4 131 174-312 19-169 (267)
273 KOG0459|consensus 99.3 1.8E-12 3.8E-17 120.3 6.7 89 11-101 154-256 (501)
274 cd01888 eIF2_gamma eIF2-gamma 99.3 3.6E-12 7.8E-17 111.5 8.4 112 13-127 82-197 (203)
275 PRK14256 phosphate ABC transpo 99.3 1.5E-12 3.3E-17 117.5 6.2 129 176-312 5-154 (252)
276 PRK12288 GTPase RsgA; Reviewed 99.3 8.5E-12 1.9E-16 117.4 11.5 152 33-276 118-271 (347)
277 PRK14265 phosphate ABC transpo 99.3 1.9E-12 4.2E-17 118.4 7.0 137 169-311 14-166 (274)
278 TIGR03680 eif2g_arch translati 99.3 2.2E-12 4.7E-17 124.5 7.5 110 14-126 80-193 (406)
279 PRK14248 phosphate ABC transpo 99.3 2.3E-12 4.9E-17 117.5 7.2 138 170-312 16-170 (268)
280 cd03254 ABCC_Glucan_exporter_l 99.3 7.1E-13 1.5E-17 117.9 3.8 47 193-240 17-66 (229)
281 COG4987 CydC ABC-type transpor 99.3 8.8E-13 1.9E-17 126.7 4.6 126 175-311 336-479 (573)
282 PRK14240 phosphate transporter 99.3 1E-12 2.2E-17 118.5 4.8 132 176-312 4-152 (250)
283 COG1132 MdlB ABC-type multidru 99.3 1.4E-12 3.1E-17 130.9 6.3 132 176-312 329-471 (567)
284 PRK14274 phosphate ABC transpo 99.3 1.6E-12 3.6E-17 117.8 6.0 130 175-312 12-161 (259)
285 PRK14246 phosphate ABC transpo 99.3 1.2E-12 2.6E-17 118.7 5.1 129 175-311 10-158 (257)
286 PRK14243 phosphate transporter 99.3 1.6E-12 3.5E-17 118.3 5.9 132 175-312 10-157 (264)
287 cd03233 ABC_PDR_domain1 The pl 99.3 8.6E-13 1.9E-17 115.3 3.7 65 175-240 3-73 (202)
288 PRK14249 phosphate ABC transpo 99.3 2.4E-12 5.2E-17 116.2 6.7 132 176-312 5-153 (251)
289 cd03245 ABCC_bacteriocin_expor 99.3 1.3E-12 2.8E-17 115.5 4.7 47 193-240 18-67 (220)
290 PRK03695 vitamin B12-transport 99.3 2.1E-12 4.5E-17 116.5 6.0 113 194-311 11-131 (248)
291 PF00005 ABC_tran: ABC transpo 99.3 5.3E-13 1.2E-17 108.9 1.9 98 201-311 10-113 (137)
292 PRK14238 phosphate transporter 99.3 2E-12 4.3E-17 118.2 5.8 134 174-312 23-173 (271)
293 PRK05124 cysN sulfate adenylyl 99.3 1.8E-12 4E-17 127.0 5.9 84 11-96 104-192 (474)
294 PRK14271 phosphate ABC transpo 99.3 2.9E-12 6.3E-17 117.4 6.7 134 174-312 20-169 (276)
295 PRK14275 phosphate ABC transpo 99.3 2.3E-12 5E-17 118.7 5.9 133 175-312 39-188 (286)
296 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.3 2.2E-12 4.7E-17 115.5 5.4 118 193-312 17-145 (238)
297 PRK14261 phosphate ABC transpo 99.3 3.3E-12 7.2E-17 115.4 6.5 132 175-311 6-154 (253)
298 PRK14253 phosphate ABC transpo 99.3 3.1E-12 6.6E-17 115.3 6.0 132 176-312 4-151 (249)
299 PRK13546 teichoic acids export 99.3 2.3E-12 5E-17 117.3 5.3 108 193-312 38-149 (264)
300 cd03253 ABCC_ATM1_transporter 99.3 2.2E-12 4.8E-17 115.2 5.1 46 193-239 15-63 (236)
301 PRK14251 phosphate ABC transpo 99.3 2.2E-12 4.7E-17 116.4 5.0 130 175-312 4-153 (251)
302 PRK14245 phosphate ABC transpo 99.3 3.4E-12 7.3E-17 115.1 6.2 132 176-312 4-152 (250)
303 COG4988 CydD ABC-type transpor 99.3 2.6E-12 5.7E-17 124.9 5.7 78 193-271 335-419 (559)
304 PRK14262 phosphate ABC transpo 99.3 2E-12 4.4E-17 116.6 4.7 130 175-312 3-152 (250)
305 PRK14260 phosphate ABC transpo 99.3 3.5E-12 7.6E-17 115.7 6.2 133 175-312 7-156 (259)
306 cd03244 ABCC_MRP_domain2 Domai 99.3 2.9E-12 6.3E-17 113.3 5.4 47 193-240 18-67 (221)
307 PRK14263 phosphate ABC transpo 99.3 3.7E-12 8.1E-17 115.7 6.2 119 190-312 19-155 (261)
308 PRK11174 cysteine/glutathione 99.3 2.4E-12 5.1E-17 129.9 5.4 90 176-270 350-446 (588)
309 TIGR03796 NHPM_micro_ABC1 NHPM 99.3 2.5E-12 5.4E-17 132.5 5.6 92 176-270 478-576 (710)
310 COG4172 ABC-type uncharacteriz 99.3 2.9E-11 6.3E-16 112.8 11.9 120 192-313 300-433 (534)
311 PRK11176 lipid transporter ATP 99.3 2.9E-12 6.3E-17 129.1 5.8 93 175-270 341-440 (582)
312 TIGR03375 type_I_sec_LssB type 99.3 2.3E-12 5.1E-17 132.4 5.1 92 176-270 464-562 (694)
313 PRK14239 phosphate transporter 99.3 4.4E-12 9.5E-17 114.5 6.3 133 175-312 5-154 (252)
314 PRK00049 elongation factor Tu; 99.3 7.1E-12 1.5E-16 120.5 8.0 87 12-100 73-163 (396)
315 COG4133 CcmA ABC-type transpor 99.3 1E-12 2.3E-17 110.8 2.0 50 189-239 12-64 (209)
316 CHL00131 ycf16 sulfate ABC tra 99.3 4.7E-12 1E-16 114.3 6.4 61 175-240 7-72 (252)
317 PLN03211 ABC transporter G-25; 99.3 2.5E-12 5.4E-17 130.9 4.9 121 188-313 77-213 (659)
318 cd01854 YjeQ_engC YjeQ/EngC. 99.3 3.2E-11 6.9E-16 111.1 11.8 47 33-81 76-124 (287)
319 PRK10790 putative multidrug tr 99.3 2.8E-12 6.2E-17 129.4 5.3 91 176-270 341-438 (592)
320 PRK11160 cysteine/glutathione 99.3 3.5E-12 7.6E-17 128.3 5.8 92 176-270 339-437 (574)
321 TIGR02857 CydD thiol reductant 99.3 3.5E-12 7.6E-17 127.1 5.7 93 175-270 320-419 (529)
322 TIGR01193 bacteriocin_ABC ABC- 99.3 2.7E-12 5.9E-17 132.2 4.9 91 176-270 474-571 (708)
323 COG1101 PhnK ABC-type uncharac 99.3 2.7E-12 5.8E-17 110.6 3.6 120 192-313 19-155 (263)
324 PRK14255 phosphate ABC transpo 99.3 7.8E-12 1.7E-16 112.9 7.0 133 175-312 5-154 (252)
325 PRK10535 macrolide transporter 99.3 2.8E-12 6.1E-17 130.6 4.5 133 175-311 4-149 (648)
326 PRK14258 phosphate ABC transpo 99.3 7.3E-12 1.6E-16 113.8 6.8 133 175-312 7-156 (261)
327 TIGR01194 cyc_pep_trnsptr cycl 99.3 3.6E-12 7.7E-17 127.8 5.2 125 176-312 338-476 (555)
328 PRK09580 sufC cysteine desulfu 99.3 6.5E-12 1.4E-16 113.0 6.4 49 191-240 13-66 (248)
329 COG0532 InfB Translation initi 99.3 6.2E-12 1.3E-16 121.1 6.5 64 14-79 55-120 (509)
330 PRK11819 putative ABC transpor 99.3 4.3E-12 9.4E-17 127.2 5.4 59 175-237 6-67 (556)
331 cd03288 ABCC_SUR2 The SUR doma 99.3 5.4E-12 1.2E-16 114.4 5.5 63 175-240 19-84 (257)
332 TIGR01257 rim_protein retinal- 99.3 2.9E-12 6.4E-17 141.8 4.3 132 174-311 1936-2075(2272)
333 PRK13545 tagH teichoic acids e 99.3 6.9E-12 1.5E-16 122.6 6.4 108 193-312 38-149 (549)
334 COG4172 ABC-type uncharacteriz 99.3 2E-12 4.3E-17 120.4 2.5 141 174-318 5-169 (534)
335 PRK15064 ABC transporter ATP-b 99.3 3.2E-12 7E-17 127.4 4.2 49 189-238 11-62 (530)
336 PRK14252 phosphate ABC transpo 99.3 6.2E-12 1.3E-16 114.5 5.8 134 174-312 15-167 (265)
337 TIGR02204 MsbA_rel ABC transpo 99.2 5.1E-12 1.1E-16 127.1 5.4 93 176-270 338-437 (576)
338 cd03289 ABCC_CFTR2 The CFTR su 99.2 5.2E-12 1.1E-16 115.6 4.9 124 176-312 3-144 (275)
339 TIGR02203 MsbA_lipidA lipid A 99.2 5E-12 1.1E-16 127.1 5.2 92 176-270 331-429 (571)
340 COG4674 Uncharacterized ABC-ty 99.2 3.3E-12 7.2E-17 108.4 3.3 133 184-318 10-162 (249)
341 PRK14264 phosphate ABC transpo 99.2 7.9E-12 1.7E-16 116.1 6.2 61 175-240 45-113 (305)
342 PRK14236 phosphate transporter 99.2 9.1E-12 2E-16 113.8 6.3 130 175-312 25-174 (272)
343 cd03237 ABC_RNaseL_inhibitor_d 99.2 3.7E-12 8E-17 114.8 3.6 98 201-312 24-121 (246)
344 TIGR01257 rim_protein retinal- 99.2 3.7E-12 8.1E-17 141.0 4.3 132 175-312 928-1067(2272)
345 cd03236 ABC_RNaseL_inhibitor_d 99.2 6.7E-12 1.4E-16 113.6 5.2 41 194-235 16-58 (255)
346 COG0488 Uup ATPase components 99.2 8.1E-12 1.8E-16 123.2 6.1 52 185-237 9-63 (530)
347 PRK13657 cyclic beta-1,2-gluca 99.2 5.6E-12 1.2E-16 127.2 5.1 91 176-270 335-432 (588)
348 PRK05506 bifunctional sulfate 99.2 8E-12 1.7E-16 126.9 5.9 84 12-97 102-190 (632)
349 COG0396 sufC Cysteine desulfur 99.2 1.4E-11 3E-16 107.2 6.5 48 192-240 17-69 (251)
350 PRK00098 GTPase RsgA; Reviewed 99.2 2.3E-10 5E-15 105.9 15.0 45 33-79 78-124 (298)
351 cd03290 ABCC_SUR1_N The SUR do 99.2 9.2E-12 2E-16 110.0 5.1 46 193-239 15-63 (218)
352 TIGR01187 potA spermidine/putr 99.2 4E-12 8.8E-17 119.1 2.8 102 207-312 1-106 (325)
353 PRK12289 GTPase RsgA; Reviewed 99.2 5.6E-11 1.2E-15 112.0 10.2 54 32-87 86-141 (352)
354 KOG0055|consensus 99.2 6.7E-12 1.5E-16 131.1 4.2 97 175-273 350-453 (1228)
355 PRK14257 phosphate ABC transpo 99.2 1.4E-11 3.1E-16 115.5 6.0 135 175-312 80-231 (329)
356 TIGR00955 3a01204 The Eye Pigm 99.2 1.2E-11 2.6E-16 125.3 5.6 119 191-313 37-173 (617)
357 KOG0055|consensus 99.2 1.6E-11 3.4E-16 128.3 6.5 134 175-311 987-1131(1228)
358 PRK14266 phosphate ABC transpo 99.2 1.3E-11 2.9E-16 111.2 4.9 132 176-312 4-152 (250)
359 TIGR01846 type_I_sec_HlyB type 99.2 1.2E-11 2.6E-16 127.1 5.2 92 176-270 456-554 (694)
360 PRK10522 multidrug transporter 99.2 1.4E-11 3.1E-16 123.2 5.6 82 175-260 322-409 (547)
361 COG4618 ArpD ABC-type protease 99.2 3E-11 6.5E-16 115.5 7.4 76 192-270 349-433 (580)
362 TIGR00157 ribosome small subun 99.2 5.5E-11 1.2E-15 107.0 8.6 74 3-81 5-82 (245)
363 KOG1145|consensus 99.2 5E-11 1.1E-15 114.5 8.4 65 13-79 200-266 (683)
364 TIGR00956 3a01205 Pleiotropic 99.2 1.1E-11 2.5E-16 135.2 4.6 117 192-313 776-908 (1394)
365 cd03230 ABC_DR_subfamily_A Thi 99.2 3.2E-11 7E-16 102.8 6.5 48 192-240 13-63 (173)
366 TIGR03719 ABC_ABC_ChvD ATP-bin 99.2 1.8E-11 3.9E-16 122.7 5.7 59 175-237 4-65 (552)
367 PRK15177 Vi polysaccharide exp 99.2 9.3E-12 2E-16 109.7 3.1 40 195-235 3-45 (213)
368 TIGR01842 type_I_sec_PrtD type 99.2 1.8E-11 4E-16 122.4 5.6 133 176-312 317-460 (544)
369 cd03369 ABCC_NFT1 Domain 2 of 99.2 3.7E-11 8E-16 105.3 6.8 63 175-240 6-71 (207)
370 PRK10789 putative multidrug tr 99.2 1.9E-11 4.1E-16 122.9 5.7 92 176-270 314-412 (569)
371 cd03216 ABC_Carb_Monos_I This 99.2 3.4E-11 7.4E-16 101.7 6.3 51 189-240 10-63 (163)
372 COG4107 PhnK ABC-type phosphon 99.2 3.2E-11 6.8E-16 100.8 5.8 130 175-311 6-156 (258)
373 TIGR01192 chvA glucan exporter 99.2 2.9E-11 6.3E-16 121.9 6.6 132 176-312 335-477 (585)
374 PRK10636 putative ABC transpor 99.2 1.7E-11 3.7E-16 124.6 4.8 52 186-238 8-62 (638)
375 cd03229 ABC_Class3 This class 99.2 4.9E-11 1.1E-15 102.1 6.7 48 192-240 13-63 (178)
376 COG4138 BtuD ABC-type cobalami 99.2 5.3E-11 1.2E-15 99.5 6.5 107 201-317 24-136 (248)
377 PLN03232 ABC transporter C fam 99.2 3.2E-11 7E-16 132.8 6.4 92 176-270 1235-1333(1495)
378 cd03215 ABC_Carb_Monos_II This 99.2 4.7E-11 1E-15 102.6 6.1 46 194-240 15-63 (182)
379 PTZ00265 multidrug resistance 99.2 2.5E-11 5.5E-16 132.9 5.2 94 176-271 1166-1320(1466)
380 cd03291 ABCC_CFTR1 The CFTR su 99.2 3.8E-11 8.2E-16 110.3 5.6 58 174-238 38-98 (282)
381 PRK13409 putative ATPase RIL; 99.1 3E-11 6.5E-16 121.5 4.9 53 182-235 76-131 (590)
382 PLN03130 ABC transporter C fam 99.1 4.1E-11 8.8E-16 132.4 6.3 93 175-270 1237-1336(1622)
383 cd03222 ABC_RNaseL_inhibitor T 99.1 7.4E-11 1.6E-15 100.9 6.5 54 184-238 5-60 (177)
384 PRK12317 elongation factor 1-a 99.1 8.8E-11 1.9E-15 114.0 7.7 87 12-100 82-175 (425)
385 PRK04000 translation initiatio 99.1 1.2E-10 2.5E-15 112.5 8.4 111 14-127 85-199 (411)
386 cd03228 ABCC_MRP_Like The MRP 99.1 6.2E-11 1.3E-15 100.8 5.7 47 193-240 16-65 (171)
387 cd03246 ABCC_Protease_Secretio 99.1 6.9E-11 1.5E-15 100.7 5.6 46 194-240 17-65 (173)
388 TIGR00483 EF-1_alpha translati 99.1 9.1E-11 2E-15 113.9 7.1 86 13-100 84-177 (426)
389 KOG0056|consensus 99.1 1.4E-10 3E-15 110.4 8.0 94 175-272 537-637 (790)
390 cd03213 ABCG_EPDR ABCG transpo 99.1 9.4E-11 2E-15 101.8 6.3 64 176-240 4-74 (194)
391 TIGR00957 MRP_assoc_pro multi 99.1 6.6E-11 1.4E-15 130.6 6.6 90 176-268 1285-1381(1522)
392 PTZ00243 ABC transporter; Prov 99.1 7.8E-11 1.7E-15 129.9 6.9 92 175-269 1308-1406(1560)
393 cd03232 ABC_PDR_domain2 The pl 99.1 8.7E-11 1.9E-15 101.8 5.7 65 175-240 3-72 (192)
394 TIGR00954 3a01203 Peroxysomal 99.1 3.3E-11 7.1E-16 123.0 3.0 122 176-311 452-587 (659)
395 cd03247 ABCC_cytochrome_bd The 99.1 1E-10 2.2E-15 100.1 5.2 47 193-240 16-65 (178)
396 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.1 9.4E-11 2E-15 97.0 4.8 45 193-238 14-61 (144)
397 cd03223 ABCD_peroxisomal_ALDP 99.1 1.3E-10 2.8E-15 98.5 5.6 45 193-238 15-62 (166)
398 cd03217 ABC_FeS_Assembly ABC-t 99.1 1.9E-10 4.2E-15 100.3 6.9 49 191-240 12-65 (200)
399 cd01885 EF2 EF2 (for archaea a 99.1 1.5E-10 3.2E-15 102.6 6.2 65 13-79 72-138 (222)
400 cd01883 EF1_alpha Eukaryotic e 99.1 1.7E-10 3.7E-15 102.1 6.4 85 12-98 75-173 (219)
401 PTZ00265 multidrug resistance 99.1 4.3E-11 9.3E-16 131.1 2.4 93 176-270 383-483 (1466)
402 COG4615 PvdE ABC-type sideroph 99.1 7E-11 1.5E-15 109.9 3.4 85 174-262 321-411 (546)
403 cd03238 ABC_UvrA The excision 99.1 9E-11 1.9E-15 100.3 3.6 41 192-237 8-51 (176)
404 KOG0061|consensus 99.1 1.1E-10 2.5E-15 117.7 4.7 122 191-313 42-177 (613)
405 PLN03140 ABC transporter G fam 99.0 1.2E-10 2.6E-15 127.3 4.3 117 192-312 893-1025(1470)
406 cd01886 EF-G Elongation factor 99.0 1.2E-09 2.6E-14 99.7 9.8 80 14-96 64-145 (270)
407 cd04171 SelB SelB subfamily. 99.0 1.4E-09 3E-14 90.6 9.2 108 13-124 50-161 (164)
408 cd04165 GTPBP1_like GTPBP1-lik 99.0 8.3E-11 1.8E-15 104.5 1.9 116 204-319 1-117 (224)
409 TIGR01394 TypA_BipA GTP-bindin 99.0 2.3E-10 5E-15 114.9 5.2 80 14-96 64-145 (594)
410 TIGR00487 IF-2 translation ini 99.0 5.1E-10 1.1E-14 112.2 7.1 64 15-80 136-201 (587)
411 KOG0466|consensus 99.0 3.9E-10 8.4E-15 101.5 5.4 88 16-105 127-218 (466)
412 TIGR00956 3a01205 Pleiotropic 99.0 3.4E-10 7.5E-15 123.8 6.0 120 192-314 74-217 (1394)
413 PRK05306 infB translation init 99.0 4.6E-10 1E-14 115.3 6.3 66 13-80 336-403 (787)
414 PLN03140 ABC transporter G fam 99.0 4.5E-10 9.8E-15 122.9 6.6 77 192-269 178-262 (1470)
415 TIGR01271 CFTR_protein cystic 99.0 4.7E-10 1E-14 123.6 6.3 116 176-304 1218-1340(1490)
416 PLN03073 ABC transporter F fam 99.0 5.3E-10 1.2E-14 114.7 5.6 57 175-236 177-239 (718)
417 KOG0059|consensus 99.0 4.7E-10 1E-14 117.9 4.8 116 194-313 580-705 (885)
418 cd01858 NGP_1 NGP-1. Autoanti 99.0 3.6E-09 7.8E-14 88.6 9.2 58 33-92 6-65 (157)
419 PRK11147 ABC transporter ATPas 98.9 6.4E-10 1.4E-14 113.3 5.3 58 175-237 3-63 (635)
420 KOG0461|consensus 98.9 2E-09 4.3E-14 98.5 7.7 112 15-128 71-192 (522)
421 PLN00116 translation elongatio 98.9 1.1E-09 2.3E-14 114.5 6.6 78 13-92 97-186 (843)
422 cd04166 CysN_ATPS CysN_ATPS su 98.9 1.6E-09 3.6E-14 95.0 6.7 82 13-96 76-162 (208)
423 TIGR00957 MRP_assoc_pro multi 98.9 8.4E-10 1.8E-14 121.9 5.5 122 176-312 637-766 (1522)
424 cd01889 SelB_euk SelB subfamil 98.9 3.6E-09 7.7E-14 91.5 7.7 112 13-127 67-184 (192)
425 cd00267 ABC_ATPase ABC (ATP-bi 98.9 1.6E-09 3.5E-14 90.7 5.1 46 193-239 13-61 (157)
426 PLN03130 ABC transporter C fam 98.9 1.1E-09 2.3E-14 121.3 5.1 85 175-271 614-703 (1622)
427 PTZ00243 ABC transporter; Prov 98.9 1.1E-09 2.4E-14 120.9 4.8 108 192-312 673-788 (1560)
428 TIGR03594 GTPase_EngA ribosome 98.9 9.1E-09 2E-13 99.9 10.6 66 15-82 48-123 (429)
429 TIGR01271 CFTR_protein cystic 98.9 1.7E-09 3.8E-14 119.1 6.0 67 193-270 440-510 (1490)
430 CHL00189 infB translation init 98.9 1.3E-09 2.9E-14 111.1 4.6 65 14-80 295-361 (742)
431 PRK00093 GTP-binding protein D 98.9 1E-08 2.2E-13 99.9 9.9 65 14-80 49-123 (435)
432 PRK04004 translation initiatio 98.9 8.2E-09 1.8E-13 103.7 9.4 62 16-79 73-136 (586)
433 COG1217 TypA Predicted membran 98.9 4.4E-09 9.5E-14 99.6 6.9 79 14-97 68-150 (603)
434 COG5265 ATM1 ABC-type transpor 98.8 2.7E-09 5.8E-14 100.2 4.9 121 148-272 219-362 (497)
435 KOG1144|consensus 98.8 4.7E-08 1E-12 97.0 13.1 62 15-78 541-604 (1064)
436 cd04168 TetM_like Tet(M)-like 98.8 4.9E-09 1.1E-13 93.9 5.8 82 13-97 63-146 (237)
437 PLN03232 ABC transporter C fam 98.8 3.7E-09 8.1E-14 116.7 5.9 86 175-271 614-703 (1495)
438 cd01849 YlqF_related_GTPase Yl 98.8 1.7E-08 3.8E-13 84.3 8.6 53 37-91 1-54 (155)
439 PRK00007 elongation factor G; 98.8 4.3E-09 9.4E-14 108.0 5.6 81 13-96 74-156 (693)
440 PRK10218 GTP-binding protein; 98.8 8.1E-09 1.8E-13 103.8 5.3 80 14-96 68-149 (607)
441 PRK03003 GTP-binding protein D 98.7 4.2E-08 9.1E-13 96.6 10.0 64 15-80 87-160 (472)
442 PTZ00416 elongation factor 2; 98.7 1E-08 2.2E-13 107.1 5.6 81 14-96 92-184 (836)
443 PRK14845 translation initiatio 98.7 2.8E-08 6.1E-13 104.6 7.7 65 14-80 526-592 (1049)
444 KOG0462|consensus 98.7 2.5E-08 5.5E-13 96.2 6.7 79 12-95 123-205 (650)
445 KOG0054|consensus 98.7 2.3E-08 5E-13 107.1 6.5 107 192-308 1153-1266(1381)
446 PRK07560 elongation factor EF- 98.7 1.7E-08 3.7E-13 104.2 5.2 65 13-79 86-152 (731)
447 PRK12739 elongation factor G; 98.7 1.7E-08 3.6E-13 103.7 5.0 81 13-96 72-154 (691)
448 cd03278 ABC_SMC_barmotin Barmo 98.7 7.4E-09 1.6E-13 90.2 1.7 29 202-232 23-51 (197)
449 COG4108 PrfC Peptide chain rel 98.7 2.3E-08 4.9E-13 94.3 4.6 80 14-96 81-162 (528)
450 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 8.1E-08 1.8E-12 79.0 7.4 48 34-83 10-59 (141)
451 TIGR00491 aIF-2 translation in 98.6 2.4E-08 5.3E-13 100.1 4.8 64 15-80 70-135 (590)
452 cd01891 TypA_BipA TypA (tyrosi 98.6 4.3E-08 9.2E-13 84.9 5.5 78 15-95 66-145 (194)
453 PRK09518 bifunctional cytidyla 98.6 1.5E-07 3.3E-12 97.1 10.0 65 15-81 324-398 (712)
454 KOG0054|consensus 98.6 4.5E-08 9.7E-13 104.9 6.0 68 194-272 536-607 (1381)
455 cd03273 ABC_SMC2_euk Eukaryoti 98.6 1.2E-08 2.7E-13 92.1 1.5 37 200-237 23-60 (251)
456 cd04167 Snu114p Snu114p subfam 98.6 5.5E-08 1.2E-12 85.6 5.5 64 14-79 71-136 (213)
457 cd01887 IF2_eIF5B IF2/eIF5B (i 98.6 2.3E-07 5.1E-12 77.5 8.8 66 13-80 49-116 (168)
458 PRK05433 GTP-binding protein L 98.6 5.6E-08 1.2E-12 98.0 5.6 79 13-94 73-153 (600)
459 cd00820 PEPCK_HprK Phosphoenol 98.6 6.3E-08 1.4E-12 75.5 4.3 40 194-240 4-46 (107)
460 KOG0065|consensus 98.6 6.3E-08 1.4E-12 102.1 5.4 120 190-314 802-937 (1391)
461 cd04169 RF3 RF3 subfamily. Pe 98.6 8.4E-08 1.8E-12 87.5 5.5 80 14-96 71-152 (267)
462 cd01890 LepA LepA subfamily. 98.6 1.8E-07 3.9E-12 79.3 7.2 105 15-126 68-174 (179)
463 TIGR01393 lepA GTP-binding pro 98.5 7.1E-08 1.5E-12 97.2 5.3 78 14-94 70-149 (595)
464 cd04178 Nucleostemin_like Nucl 98.5 2.9E-07 6.2E-12 78.4 8.2 56 37-94 1-58 (172)
465 PRK00741 prfC peptide chain re 98.5 8.4E-08 1.8E-12 95.3 5.4 80 14-96 79-160 (526)
466 cd01859 MJ1464 MJ1464. This f 98.5 6.7E-07 1.4E-11 74.6 9.9 46 35-82 12-57 (156)
467 TIGR00484 EF-G translation elo 98.5 1E-07 2.2E-12 98.0 5.6 81 13-96 74-156 (689)
468 KOG0052|consensus 98.5 3.4E-08 7.5E-13 92.2 1.7 71 11-83 79-159 (391)
469 COG0481 LepA Membrane GTPase L 98.5 8.1E-07 1.8E-11 84.7 10.8 107 14-127 76-184 (603)
470 cd00881 GTP_translation_factor 98.5 3.1E-07 6.7E-12 78.2 7.4 82 14-97 62-145 (189)
471 cd04170 EF-G_bact Elongation f 98.5 1.3E-07 2.7E-12 86.3 5.1 80 14-96 64-145 (268)
472 COG4178 ABC-type uncharacteriz 98.5 3.6E-07 7.9E-12 90.7 8.4 72 193-273 407-482 (604)
473 TIGR03596 GTPase_YlqF ribosome 98.5 6.4E-07 1.4E-11 82.1 8.7 60 22-86 5-68 (276)
474 cd03270 ABC_UvrA_I The excisio 98.5 9.3E-08 2E-12 85.1 3.1 31 192-222 8-42 (226)
475 cd01856 YlqF YlqF. Proteins o 98.5 6.5E-07 1.4E-11 76.0 8.0 58 21-83 2-63 (171)
476 COG1245 Predicted ATPase, RNas 98.5 1.5E-07 3.3E-12 89.4 4.5 101 195-313 359-462 (591)
477 TIGR03238 dnd_assoc_3 dnd syst 98.4 1.4E-07 3E-12 91.2 4.0 45 193-240 20-68 (504)
478 TIGR00503 prfC peptide chain r 98.4 2.4E-07 5.3E-12 92.1 5.3 80 14-96 80-161 (527)
479 cd01855 YqeH YqeH. YqeH is an 98.4 9.5E-07 2.1E-11 76.2 7.8 56 22-81 19-76 (190)
480 COG0480 FusA Translation elong 98.4 2.8E-07 6.1E-12 93.7 4.8 81 13-96 75-157 (697)
481 TIGR00490 aEF-2 translation el 98.4 3.6E-07 7.8E-12 94.3 4.9 65 13-79 85-151 (720)
482 COG2229 Predicted GTPase [Gene 98.3 8.5E-07 1.8E-11 74.8 5.8 74 6-81 58-136 (187)
483 PRK09563 rbgA GTPase YlqF; Rev 98.3 1.9E-06 4E-11 79.5 8.4 62 21-86 7-71 (287)
484 cd01130 VirB11-like_ATPase Typ 98.3 8.9E-07 1.9E-11 76.3 5.3 35 202-237 25-59 (186)
485 cd03279 ABC_sbcCD SbcCD and ot 98.3 5.3E-07 1.1E-11 79.4 3.7 25 202-227 28-52 (213)
486 PRK13351 elongation factor G; 98.3 8.8E-07 1.9E-11 91.2 5.5 82 13-97 72-155 (687)
487 KOG0060|consensus 98.3 1.5E-06 3.2E-11 85.0 6.4 65 201-271 460-525 (659)
488 PRK12740 elongation factor G; 98.2 1.5E-06 3.3E-11 89.2 5.5 80 14-96 60-141 (668)
489 COG1160 Predicted GTPases [Gen 98.2 8.6E-06 1.9E-10 77.9 9.9 63 15-79 52-125 (444)
490 KOG0064|consensus 98.2 3.9E-06 8.5E-11 81.3 7.6 61 202-271 508-569 (728)
491 KOG2355|consensus 98.2 2.3E-06 4.9E-11 73.8 4.7 65 175-240 13-77 (291)
492 TIGR03598 GTPase_YsxC ribosome 98.2 5.1E-06 1.1E-10 70.8 6.9 82 14-97 64-160 (179)
493 cd03272 ABC_SMC3_euk Eukaryoti 98.2 1E-06 2.2E-11 78.9 2.6 28 201-229 22-49 (243)
494 cd03283 ABC_MutS-like MutS-lik 98.1 1.1E-06 2.4E-11 76.6 2.6 33 194-227 16-49 (199)
495 cd03274 ABC_SMC4_euk Eukaryoti 98.1 1.7E-06 3.6E-11 76.3 3.6 33 189-223 14-46 (212)
496 cd01895 EngA2 EngA2 subfamily. 98.1 1.1E-05 2.5E-10 67.1 7.9 79 14-94 50-143 (174)
497 PF03193 DUF258: Protein of un 98.1 1E-06 2.3E-11 73.8 1.0 63 202-272 35-97 (161)
498 PRK10078 ribose 1,5-bisphospho 98.1 3.1E-06 6.6E-11 72.9 3.6 27 202-229 2-28 (186)
499 TIGR02858 spore_III_AA stage I 98.1 4.4E-06 9.4E-11 76.2 4.6 37 203-240 112-148 (270)
500 cd03240 ABC_Rad50 The catalyti 98.0 3.7E-06 8E-11 73.6 3.8 36 199-235 19-58 (204)
No 1
>KOG1143|consensus
Probab=99.97 E-value=1.3e-30 Score=237.00 Aligned_cols=220 Identities=45% Similarity=0.739 Sum_probs=198.9
Q ss_pred CCccccCccccccCCchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeee
Q psy15138 98 PGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLR 177 (320)
Q Consensus 98 ~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 177 (320)
+...++.||..+.+++..+|+++.+||+||+.|++||++|+||++|.|-..||+++||..++++|+.||...++.+.+++
T Consensus 58 ~~lgnieyk~klvnpt~~r~~hlitqMKWRLrEG~GEAiYeIGVeD~G~l~GL~deemnaSL~TL~~MA~~lGAs~~vLr 137 (591)
T KOG1143|consen 58 TELGNIEYKAKLVNPTTSRIQHLITQMKWRLREGQGEAIYEIGVEDGGILSGLTDEEMNASLRTLRTMAQALGASMVVLR 137 (591)
T ss_pred cccCceeeeeeecCccHHHHHHHHHHHHhhhhcCCCcEEEEeeeccCceeeccCHHHHHHHHHHHHHHHHHhCCceEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeecCCCe-----eeeecceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCccee
Q psy15138 178 QRKLDNGL-----TGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSS 252 (320)
Q Consensus 178 ~~~~~~~~-----~~~~~~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~ 252 (320)
.+.+...- .....++++.++-.|-..|+|++|...+|||||+.+|+.|.++.+.|..+++.+++.|++..|+.+.
T Consensus 138 ek~v~~~~~~~R~v~EVLVRKvPd~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSs 217 (591)
T KOG1143|consen 138 EKDVTVKGSSRRTVVEVLVRKVPDSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSS 217 (591)
T ss_pred eeeeeccCCCcchhhhhhhhhCCCcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccc
Confidence 88764321 1222456777777777999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCCCEEEEEe
Q psy15138 253 VGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLMH 319 (320)
Q Consensus 253 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~~~~l~v 319 (320)
+..+.++|+..++++++.. .+..+++.++..++..++|+.|+.+|.++.+++|+|.-|+|+||+|
T Consensus 218 is~evlGFd~~g~vVNY~~--~~taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvV 282 (591)
T KOG1143|consen 218 ISNEVLGFDNRGKVVNYAQ--NMTAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVV 282 (591)
T ss_pred cchhcccccccccccchhh--cccHHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEE
Confidence 9999999999999998643 3456778888899999999999999999999999999999999997
No 2
>KOG0463|consensus
Probab=99.93 E-value=6.2e-27 Score=213.36 Aligned_cols=212 Identities=66% Similarity=0.996 Sum_probs=197.3
Q ss_pred cccCCchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeee
Q psy15138 108 CLISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTG 187 (320)
Q Consensus 108 ~~~~gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (320)
.+...+.++.+.+....+.|+.+++||++|+||+..+|...||++++++.+..++..+++.+.++...++.+....+-+.
T Consensus 39 ~l~~~t~e~ve~~~~~~~~~~~egcGEtiyeiG~gsdg~~sGLseed~eas~at~~~~ae~I~Adv~klreR~~~gG~~~ 118 (641)
T KOG0463|consen 39 FLLRSTPEDVEKYMIHVRKQLMEGCGETIYEIGAGSDGPKSGLSEEDLEASAATQLKIAEKIPADVTKLRERKQTGGGTE 118 (641)
T ss_pred eEecCCHHHHHHHHHHHHHHHhccCCcEEEEecCCCCCCccCCCHHHHHHHHHHHHHHHhhCccHhhhhhhHHhcCCCee
Confidence 45667788888888888899999999999999999999999999999999999999999999999888888777777788
Q ss_pred eecceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCCcccccee
Q psy15138 188 QYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVV 267 (320)
Q Consensus 188 ~~~~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~v 267 (320)
.+.+++.+...+|...++|++|...+||||||.+|++|.++.++|..+...++|+|+...|+++.+-.+.++|+..++++
T Consensus 119 ~~liRk~~~~~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvV 198 (641)
T KOG0463|consen 119 VWLIRKPPTEKDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVV 198 (641)
T ss_pred EEEEeCCCCCccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC--CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCCCEEEEEe
Q psy15138 268 NKPEH--GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLMH 319 (320)
Q Consensus 268 ~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~~~~l~v 319 (320)
+.+.. ..+.|..+.+...+++.++|+.|+++|+++.++++.|..|||+||+|
T Consensus 199 NKPD~Hg~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMi 252 (641)
T KOG0463|consen 199 NKPDPHGHNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMI 252 (641)
T ss_pred cCCCCCCCcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEe
Confidence 98864 36778888888999999999999999999999999999999999987
No 3
>KOG0927|consensus
Probab=99.93 E-value=2.7e-26 Score=218.13 Aligned_cols=253 Identities=17% Similarity=0.126 Sum_probs=172.0
Q ss_pred CCchhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHH-hhc---------CCCcccc----Ccccccc
Q psy15138 50 GIVGMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVR-ILK---------SPGCRKV----PVMNCLI 110 (320)
Q Consensus 50 g~~~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~-~l~---------~~~~~~i----~~kl~~~ 110 (320)
+..+.-|+|++||++|++ |.+++| ||+|+.++.|||++|+++.. ++. ..+||+| ..++++|
T Consensus 221 ~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y 300 (614)
T KOG0927|consen 221 DLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYY 300 (614)
T ss_pred ccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeee
Confidence 334577889999999999 888888 99999999999999999998 344 3679988 7788999
Q ss_pred CCchhHHHHHHHHHHHHHH---cCcccceecccccCCCCCCC--CCHHHHHHHHHHHHHHHHhcCC--------------
Q psy15138 111 SPTEEQFDLLQKKIKSLID---NGRGETIYDIGIGQDGGENG--LKPDEYEASVATLQSLATTLEA-------------- 171 (320)
Q Consensus 111 ~gnyd~~~~l~~q~~~~~~---~~~~~~~~~ig~~~~~~~~~--l~~~~~~~~~~~l~~~~~~~~~-------------- 171 (320)
.|||++|...+.+..+++. +.+++++..+.....+...+ --..+.++..+++.+|.+.--.
T Consensus 301 ~Gnydqy~~tr~E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~~~f~ 380 (614)
T KOG0927|consen 301 EGNYDQYVKTRSELEENQMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGEKVLSFRFP 380 (614)
T ss_pred cCCHHHHhhHHHHHhHHHHHHHHHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhccccccccCCceEEEEcc
Confidence 9999999987776654422 22333333333222222222 2235778888888887764211
Q ss_pred -----ceeeeeeeecCCCeeeeecceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhh
Q psy15138 172 -----DCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEME 246 (320)
Q Consensus 172 -----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~ 246 (320)
..+.+.+.+++|+|.........++.+.-.++++++|||||+|||||||++. |.+.|..|.++... | ..
T Consensus 381 ~vg~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~-gdl~p~~G~vs~~~----H-~~ 454 (614)
T KOG0927|consen 381 EVGKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLIT-GDLQPTIGMVSRHS----H-NK 454 (614)
T ss_pred cccCCCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHh-hccccccccccccc----c-cc
Confidence 1235566777788876655555666666669999999999999999999999 99999999988642 2 12
Q ss_pred cCcceeeeccccCCcc-ccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCCCEE
Q psy15138 247 SGRTSSVGNDILGFDS-VGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVPDFG 315 (320)
Q Consensus 247 ~g~v~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~~~~ 315 (320)
.++..|..++.+.++- ..+.+...... ..+.+++-.+++..|+. +....++++||+++..++
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~-------~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rV 518 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKFPD-------EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRV 518 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhccc-------cchHHHHHHHHHHhCCCccccccchhhcccccchhH
Confidence 4455666555554421 11211111111 12334455667777776 667788999999876544
No 4
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.92 E-value=8e-26 Score=221.72 Aligned_cols=245 Identities=17% Similarity=0.150 Sum_probs=165.0
Q ss_pred chhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHhhc---------CCCcccc----CccccccCCc
Q psy15138 52 VGMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRILK---------SPGCRKV----PVMNCLISPT 113 (320)
Q Consensus 52 ~~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~l~---------~~~~~~i----~~kl~~~~gn 113 (320)
.+..|++++||++|.. |.++++ ||+|+.++.|||++|++++.++. ..+|++| .+++..|.||
T Consensus 155 SGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gn 234 (530)
T COG0488 155 SGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGN 234 (530)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCC
Confidence 3688899999999999 777777 99999999999999999998654 2778877 7789999999
Q ss_pred hhHHHHHHHHHHHHHHcCcc---cceecccccCCCCCCC-CCHHHHHHHHHHHHHHHHh---cCCc--------------
Q psy15138 114 EEQFDLLQKKIKSLIDNGRG---ETIYDIGIGQDGGENG-LKPDEYEASVATLQSLATT---LEAD-------------- 172 (320)
Q Consensus 114 yd~~~~l~~q~~~~~~~~~~---~~~~~ig~~~~~~~~~-l~~~~~~~~~~~l~~~~~~---~~~~-------------- 172 (320)
|+.|.+.+++..+++.+... +.+.++....++.... .+..+.+++.+.+++|.+. ....
T Consensus 235 y~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~ 314 (530)
T COG0488 235 YSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPG 314 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCc
Confidence 99999999988766443332 3333333333443333 3335888999999888732 1110
Q ss_pred ----eeeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhh
Q psy15138 173 ----CVLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEM 245 (320)
Q Consensus 173 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~ 245 (320)
..++.+++++++|... +..+++.+|. |+++||+||||+|||||||+|+ |.+.|.+|.|.+. ...
T Consensus 315 ~~~g~~vl~~~~~~~~y~~~---~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~-g~~~~~~G~v~~g-----~~v 385 (530)
T COG0488 315 KRLGKLVLEFENVSKGYDGG---RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLA-GELGPLSGTVKVG-----ETV 385 (530)
T ss_pred ccCCCeeEEEeccccccCCC---ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHh-hhcccCCceEEeC-----Cce
Confidence 1233444445544332 4555666664 9999999999999999999999 9999999999874 224
Q ss_pred hcCcceeeeccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCCC
Q psy15138 246 ESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVPD 313 (320)
Q Consensus 246 ~~g~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~~ 313 (320)
.+||+.|.......-.+..+.+...... . ....+-.+++.+++. +...+++..|||++..
T Consensus 386 ~igyf~Q~~~~l~~~~t~~d~l~~~~~~---~-----~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~ 446 (530)
T COG0488 386 KIGYFDQHRDELDPDKTVLEELSEGFPD---G-----DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKA 446 (530)
T ss_pred EEEEEEehhhhcCccCcHHHHHHhhCcc---c-----cHHHHHHHHHHcCCChHHHhCchhhcCHhHHH
Confidence 4677777653322111111111111000 0 023344566666664 5568899999997643
No 5
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.87 E-value=4.2e-22 Score=182.41 Aligned_cols=215 Identities=34% Similarity=0.573 Sum_probs=177.6
Q ss_pred cccCccccccC--CchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeee
Q psy15138 101 RKVPVMNCLIS--PTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQ 178 (320)
Q Consensus 101 ~~i~~kl~~~~--gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 178 (320)
+++.+|+++.+ -..++++.+..||+.|+.++.|++.|.+|++++|.+.|++.+++.+++.+|+.++...++.+..++.
T Consensus 15 ~nVEfK~~ls~~hl~~~R~~~La~Qmk~Rl~~GdGeA~YviGVsd~Ge~~Gl~~~~l~esievL~~la~evgA~i~~v~~ 94 (527)
T COG5258 15 ENVEFKLTLSPIHLKEDRLDRLAGQMKYRLEEGDGEAVYVIGVSDDGEPLGLSDEKLVESIEVLRELAREVGASIYIVRV 94 (527)
T ss_pred cceeeeeecCccccChhHHHHHHHHHHHHHHcCCceEEEEEEecCCCcccCCCHHHHHHHHHHHHHHHHHhCCEEEEEEE
Confidence 35677776665 6888999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eecCCCeeeeecceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeecccc
Q psy15138 179 RKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDIL 258 (320)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~ 258 (320)
.....+|.....++.-... -.....++..|+..+|||||+.+|.+|.++.++|..+.....++|+..+|..+..+-..+
T Consensus 95 ~eg~~g~Vaev~vrr~~~~-~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~ 173 (527)
T COG5258 95 HEGTDGYVAEVLVRRKTEE-APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVY 173 (527)
T ss_pred EeccCcEEEEEEEEecccC-CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEE
Confidence 8888888776554321111 111345899999999999999999999999999998888778899999999998888888
Q ss_pred CCccccceeecCCCCCCCHHhHH---HHHHHHHHHhcccCCccccccccccccCCCCCEEEEEe
Q psy15138 259 GFDSVGNVVNKPEHGSLDWVKIC---ERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLMH 319 (320)
Q Consensus 259 ~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~~~~l~v 319 (320)
+|+.. ..+ ...+.+...+.. +.++++..++|..||+.++.+.+.+|-||++||+||+|
T Consensus 174 Gf~dg-k~~--rlknPld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvV 234 (527)
T COG5258 174 GFDDG-KVV--RLKNPLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVV 234 (527)
T ss_pred EecCC-ceE--eecCcccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEE
Confidence 88653 333 122333333333 45667888999999999999999999999999999997
No 6
>KOG0066|consensus
Probab=99.86 E-value=2.7e-22 Score=186.74 Aligned_cols=198 Identities=20% Similarity=0.269 Sum_probs=130.3
Q ss_pred hhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHhhc---------CCCcccc----CccccccCCch
Q psy15138 53 GMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRILK---------SPGCRKV----PVMNCLISPTE 114 (320)
Q Consensus 53 ~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~l~---------~~~~~~i----~~kl~~~~gny 114 (320)
+.-|+|+.||+||++ |.++.+ ||+||.+.-||.+||+.|+++|. ..+|+.| ..++.+|.|||
T Consensus 415 GGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 415 GGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred CceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhhhcchH
Confidence 355789999999999 777777 99999999999999999999986 2789877 78899999999
Q ss_pred hHHHHHHHHHHHHHH---cCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhc----------------------
Q psy15138 115 EQFDLLQKKIKSLID---NGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTL---------------------- 169 (320)
Q Consensus 115 d~~~~l~~q~~~~~~---~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~---------------------- 169 (320)
.-|.+.-.|-+..+. +.+.+....+.. .|......+.+..+++.+=..-....
T Consensus 495 ~~FKKmY~Qk~~e~~K~yekQeK~LkelKa--~GkS~KqAEkq~Ke~ltrKq~K~~~Knq~dded~gapELL~RpKEY~V 572 (807)
T KOG0066|consen 495 TLFKKMYAQKMQEHEKNYEKQEKQLKELKA--EGKSAKQAEKQVKEQLTRKQKKGGKKNQNDDEDAGAPELLQRPKEYSV 572 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcchHHHHHHHHHHHHHHHHhccccccCccccccCHHHHhCchheEE
Confidence 999876555432221 112222222210 11111111122222222211100000
Q ss_pred --------CCceeeeeeeecCCCeeeeecceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc
Q psy15138 170 --------EADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH 241 (320)
Q Consensus 170 --------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~ 241 (320)
.-.++++-+-++.|+|....+.+..++++.-..+|||||||||.||||||++|. |.++|..|+.+-+
T Consensus 573 kF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~-Gkl~P~~GE~RKn---- 647 (807)
T KOG0066|consen 573 KFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLI-GKLDPNDGELRKN---- 647 (807)
T ss_pred EEecCCCCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHh-cCCCCCcchhhcc----
Confidence 001123444455666665555666677666669999999999999999999999 9999999998753
Q ss_pred hhhhhcCcceeeecccc
Q psy15138 242 KHEMESGRTSSVGNDIL 258 (320)
Q Consensus 242 ~~~~~~g~v~~~~~~~~ 258 (320)
|+.++|++.|...+.+
T Consensus 648 -hrL~iG~FdQh~~E~L 663 (807)
T KOG0066|consen 648 -HRLRIGWFDQHANEAL 663 (807)
T ss_pred -ceeeeechhhhhHHhh
Confidence 4455777777665544
No 7
>KOG0062|consensus
Probab=99.84 E-value=4.1e-22 Score=188.80 Aligned_cols=247 Identities=17% Similarity=0.119 Sum_probs=162.1
Q ss_pred hhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHhhc---------CCCcccc----CccccccCCch
Q psy15138 53 GMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRILK---------SPGCRKV----PVMNCLISPTE 114 (320)
Q Consensus 53 ~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~l~---------~~~~~~i----~~kl~~~~gny 114 (320)
+.=||+|+||||++. |.++++ ||+|..+..|||+||+++..+.. +.+|+.| ..|+.+|.|||
T Consensus 201 GGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~ 280 (582)
T KOG0062|consen 201 GGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNY 280 (582)
T ss_pred cchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcH
Confidence 466899999999999 888888 99999999999999999985443 3678877 77899999999
Q ss_pred hHHHHHHHHHHHHHH---cCcccceecccccCCCCCCCCCH-HHHHHHHHHHHHHHHhcCC-----------------ce
Q psy15138 115 EQFDLLQKKIKSLID---NGRGETIYDIGIGQDGGENGLKP-DEYEASVATLQSLATTLEA-----------------DC 173 (320)
Q Consensus 115 d~~~~l~~q~~~~~~---~~~~~~~~~ig~~~~~~~~~l~~-~~~~~~~~~l~~~~~~~~~-----------------~~ 173 (320)
+.|.+.+.+.+..+. +-+......+..+++.+.++-+. ..++++++.|.++..-... ..
T Consensus 281 ~~Fvk~k~E~~~n~qrefe~q~~~R~h~q~fid~FrYna~ra~svqSRIk~L~kl~~lk~~~~~~~~~~~fP~~~e~~~~ 360 (582)
T KOG0062|consen 281 SQFVKTKPEAKKNQQREFEVQMKYRAHLQVFIDKFRYNAARASSVQSRIKMLGKLPALKSTLIEVLIGFLFPTEGEVLSP 360 (582)
T ss_pred HHHHHhhHHhhhhhhhhcchHHHHHHHHHHHHHHhccCcccchhHHHHHHHhccCCCCCccceecccceecCCCCCcCCC
Confidence 999998776653211 22223333444555554333333 3899999999775543211 12
Q ss_pred eeeeeeecCCCeeeee-cceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCccee
Q psy15138 174 VLLRQRKLDNGLTGQY-LLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSS 252 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~ 252 (320)
+++++.++.+.|+.+. ..+..++...-..+|++++|+||+||||+++++. |.+.|.+|.+.... +.++++++|
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~-~~l~~~rgi~~~~~-----r~ri~~f~Q 434 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILK-GDLTPTRGIVGRHP-----RLRIKYFAQ 434 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHh-ccCCcccceeeecc-----cceecchhH
Confidence 4667777777776544 3344444333348899999999999999999999 99999999877642 344677777
Q ss_pred eeccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138 253 VGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP 312 (320)
Q Consensus 253 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~ 312 (320)
..-+.+.........+........ .+... +-++.+|+. +...+.+.+|||++-
T Consensus 435 hhvd~l~~~v~~vd~~~~~~pG~~----~ee~r---~hl~~~Gl~g~la~~si~~LSGGQK 488 (582)
T KOG0062|consen 435 HHVDFLDKNVNAVDFMEKSFPGKT----EEEIR---RHLGSFGLSGELALQSIASLSGGQK 488 (582)
T ss_pred hhhhHHHHHhHHHHHHHHhCCCCC----HHHHH---HHHHhcCCCchhhhccccccCCcch
Confidence 654433221111111111111111 12233 344455553 455566899999764
No 8
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.83 E-value=4.9e-21 Score=164.27 Aligned_cols=124 Identities=17% Similarity=0.127 Sum_probs=90.2
Q ss_pred CeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc-------hhhhhcCcceee
Q psy15138 184 GLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH-------KHEMESGRTSSV 253 (320)
Q Consensus 184 ~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~-------~~~~~~g~v~~~ 253 (320)
++.+.|+..++++++++. |++++|+||||||||||||||+ ++.+|++|+|.+++... ..+.+.|+++|.
T Consensus 7 ~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN-~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~ 85 (240)
T COG1126 7 NLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLN-GLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQ 85 (240)
T ss_pred eeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHH-CCcCCCCceEEECCEeccchhhHHHHHHhcCeeccc
Confidence 345566778889988886 9999999999999999999999 99999999999986431 122345555555
Q ss_pred eccccCCccccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 254 GNDILGFDSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 254 ~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
|..+... ++.+|+..+.. ...++.+. .+++.++|+.+|+.++.+.+|++|||++.
T Consensus 86 fnLFPHl-TvleNv~lap~~v~~~~k~eA---~~~A~~lL~~VGL~~ka~~yP~qLSGGQq 142 (240)
T COG1126 86 FNLFPHL-TVLENVTLAPVKVKKLSKAEA---REKALELLEKVGLADKADAYPAQLSGGQQ 142 (240)
T ss_pred ccccccc-hHHHHHHhhhHHHcCCCHHHH---HHHHHHHHHHcCchhhhhhCccccCcHHH
Confidence 5543333 44455544433 34444443 45566777788889999999999999764
No 9
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.81 E-value=3.5e-20 Score=187.96 Aligned_cols=246 Identities=15% Similarity=0.135 Sum_probs=146.9
Q ss_pred chhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHhhc---------CCCcccc----CccccccCCc
Q psy15138 52 VGMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRILK---------SPGCRKV----PVMNCLISPT 113 (320)
Q Consensus 52 ~~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~l~---------~~~~~~i----~~kl~~~~gn 113 (320)
.+..+.+++||++|-. |.++++ |++|..+..|+++++.++..++. ...|+++ .+++..|+||
T Consensus 158 SgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~ 237 (635)
T PRK11147 158 SGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGN 237 (635)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCC
Confidence 3577889999999999 778888 99999999999999998865543 1345555 6677778999
Q ss_pred hhHHHHHHHHHHHHHH---cCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHh-cCC-----------------c
Q psy15138 114 EEQFDLLQKKIKSLID---NGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATT-LEA-----------------D 172 (320)
Q Consensus 114 yd~~~~l~~q~~~~~~---~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~~~-----------------~ 172 (320)
|+.|.+.+++..+... +..++.+.+......+........+ +++.+.++++... ... .
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (635)
T PRK11147 238 YDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRN-EGRVRALKALRRERSERREVMGTAKMQVEEASRSG 316 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH-HHHHHHHHHhhhhhccccccCCceeEEeCCCCCCC
Confidence 9999887765432211 1111222111111111011111112 4455555544310 000 0
Q ss_pred eeeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCc
Q psy15138 173 CVLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGR 249 (320)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~ 249 (320)
..++++++++ ..|+...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+. . ...+|+
T Consensus 317 ~~~l~~~~l~----~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~-G~~~p~~G~i~~~-~----~~~i~y 386 (635)
T PRK11147 317 KIVFEMENVN----YQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLML-GQLQADSGRIHCG-T----KLEVAY 386 (635)
T ss_pred CceEEEeeeE----EEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHh-CCCCCCCcEEEEC-C----CcEEEE
Confidence 1134444443 344445677777775 9999999999999999999999 9999999999873 1 123566
Q ss_pred ceeeeccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138 250 TSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP 312 (320)
Q Consensus 250 v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~ 312 (320)
++|.......-.++.+++...... ..... ...++.++++.+++. +..++++..|||++.
T Consensus 387 ~~q~~~~l~~~~tv~e~l~~~~~~-~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGek 446 (635)
T PRK11147 387 FDQHRAELDPEKTVMDNLAEGKQE-VMVNG---RPRHVLGYLQDFLFHPKRAMTPVKALSGGER 446 (635)
T ss_pred EeCcccccCCCCCHHHHHHhhccc-ccccc---hHHHHHHHHHhcCCCHHHHhChhhhCCHHHH
Confidence 655432122112333443322111 00001 122345566666664 567889999999653
No 10
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=5.8e-20 Score=186.20 Aligned_cols=244 Identities=18% Similarity=0.165 Sum_probs=147.6
Q ss_pred chhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHhhc---------CCCcccc----CccccccCCc
Q psy15138 52 VGMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRILK---------SPGCRKV----PVMNCLISPT 113 (320)
Q Consensus 52 ~~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~l~---------~~~~~~i----~~kl~~~~gn 113 (320)
.+..+.+++||++|-. |.++++ |++|..+..|+++++.++..++. ...|+++ .+++..|.|+
T Consensus 151 SgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~ 230 (638)
T PRK10636 151 SGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGN 230 (638)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCC
Confidence 3677889999999999 788888 99999999999999998865543 1445555 6677789999
Q ss_pred hhHHHHHHHHHHHH---HHcCcccceecccccCCC-CCCCCCHHHHHHHHHHHHHHHHhcCC----c------------e
Q psy15138 114 EEQFDLLQKKIKSL---IDNGRGETIYDIGIGQDG-GENGLKPDEYEASVATLQSLATTLEA----D------------C 173 (320)
Q Consensus 114 yd~~~~l~~q~~~~---~~~~~~~~~~~ig~~~~~-~~~~l~~~~~~~~~~~l~~~~~~~~~----~------------~ 173 (320)
|+.|...+.+.... ..+.+++.+.+......+ ...+.+..+.+++.+.+.+|...... . .
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~~~~a~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (638)
T PRK10636 231 YSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFHFSFRAPESLPN 310 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcccccccCCceeEecCCCccCCC
Confidence 99998866543322 111111111111111111 11112234667777777665422110 0 0
Q ss_pred eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcc
Q psy15138 174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRT 250 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v 250 (320)
.+++++++ +..|+...++++++|. |++++|+||||||||||+++|+ |.++|++|+|.+... ..+|++
T Consensus 311 ~~l~~~~l----~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~-G~~~p~~G~i~~~~~-----~~igy~ 380 (638)
T PRK10636 311 PLLKMEKV----SAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLA-GELAPVSGEIGLAKG-----IKLGYF 380 (638)
T ss_pred ceEEEEee----EEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCeEEECCC-----EEEEEe
Confidence 12334433 3344445677777775 9999999999999999999999 999999999987521 235555
Q ss_pred eeeeccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138 251 SSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP 312 (320)
Q Consensus 251 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~ 312 (320)
+|..... +.. ...+..... ...... ...++.++++.+++. +..++++..|||++.
T Consensus 381 ~Q~~~~~--l~~-~~~~~~~~~-~~~~~~---~~~~~~~~L~~~~l~~~~~~~~~~~LSgGek 436 (638)
T PRK10636 381 AQHQLEF--LRA-DESPLQHLA-RLAPQE---LEQKLRDYLGGFGFQGDKVTEETRRFSGGEK 436 (638)
T ss_pred cCcchhh--CCc-cchHHHHHH-HhCchh---hHHHHHHHHHHcCCChhHhcCchhhCCHHHH
Confidence 5532111 111 111100000 001111 123344566666765 467889999999653
No 11
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=5.7e-20 Score=161.62 Aligned_cols=121 Identities=17% Similarity=0.120 Sum_probs=88.1
Q ss_pred eeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc-hhhhhcCcceeeeccccCCcc
Q psy15138 187 GQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH-KHEMESGRTSSVGNDILGFDS 262 (320)
Q Consensus 187 ~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~-~~~~~~g~v~~~~~~~~~~~~ 262 (320)
..|+...+++++++. ||+++|+||||||||||||+|+ |+.+|++|+|.+++... .....+++++|.+. .+.+.+
T Consensus 11 ~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiA-GL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~-LlPW~T 88 (248)
T COG1116 11 KSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIA-GLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDA-LLPWLT 88 (248)
T ss_pred EEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCcccCCCCCCEEEEeccCc-ccchhh
Confidence 344446777877776 9999999999999999999999 99999999999986542 22223555555544 233456
Q ss_pred ccceeecCCCCC-CCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 263 VGNVVNKPEHGS-LDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 263 ~~~~v~~~~~~~-~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
+.+|+..+.... .... +..+++.++++++|+.++.+++|++|||++.
T Consensus 89 v~~NV~l~l~~~~~~~~---e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMr 136 (248)
T COG1116 89 VLDNVALGLELRGKSKA---EARERAKELLELVGLAGFEDKYPHQLSGGMR 136 (248)
T ss_pred HHhhheehhhccccchH---hHHHHHHHHHHHcCCcchhhcCccccChHHH
Confidence 777777765432 2222 2334677788888999999999999999754
No 12
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=6.1e-20 Score=163.19 Aligned_cols=89 Identities=26% Similarity=0.299 Sum_probs=80.7
Q ss_pred CCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCC-hhHHHH
Q psy15138 11 TAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCP-PNVLQD 86 (320)
Q Consensus 11 ~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~-~~~le~ 86 (320)
|+...++.+|||||.+|+ ||+|+|++|.++| ||+|++|+|||||||+.|++-.|+| +++++||+|+++ ++.+|.
T Consensus 72 t~~rhyahVDcPGHaDYvKNMItgAaqmDgAIL--VVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellel 149 (394)
T COG0050 72 TANRHYAHVDCPGHADYVKNMITGAAQMDGAIL--VVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLEL 149 (394)
T ss_pred cCCceEEeccCCChHHHHHHHhhhHHhcCccEE--EEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHH
Confidence 456678999999999999 9999999999999 9999999999999999999999997 566779999986 888899
Q ss_pred HHHHHHHhhcCCCcc
Q psy15138 87 TLKLLVRILKSPGCR 101 (320)
Q Consensus 87 ~l~~~~~~l~~~~~~ 101 (320)
+..+++++|...++.
T Consensus 150 VemEvreLLs~y~f~ 164 (394)
T COG0050 150 VEMEVRELLSEYGFP 164 (394)
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999998876555
No 13
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.80 E-value=5.1e-20 Score=171.30 Aligned_cols=132 Identities=19% Similarity=0.116 Sum_probs=92.5
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-hhhhcCcc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-HEMESGRT 250 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-~~~~~g~v 250 (320)
.+++++++ +.|+...+++++++. ||+++|+||||||||||||+|+ |+.+|++|+|.+++.+.. .......+
T Consensus 5 ~l~i~~v~----k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IA-Gfe~p~~G~I~l~G~~i~~lpp~kR~i 79 (352)
T COG3842 5 ALEIRNVS----KSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIA-GFEQPSSGEILLDGEDITDVPPEKRPI 79 (352)
T ss_pred eEEEEeee----eecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEECCCCChhhccc
Confidence 45566544 445566677777775 9999999999999999999999 999999999999876521 11223334
Q ss_pred eeeeccccCC--ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 251 SSVGNDILGF--DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 251 ~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
..+||++..| .++.+|+.++..... .....+..+++.+++++++++++.+++|++|||++.
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~-~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQq 142 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRK-KLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQ 142 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcC-CCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHH
Confidence 4445554444 467788888765211 111122345566677788889999999999999764
No 14
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.79 E-value=7.7e-20 Score=160.26 Aligned_cols=129 Identities=14% Similarity=0.172 Sum_probs=91.9
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc------hhhhh
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH------KHEME 246 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~------~~~~~ 246 (320)
++++++++.|. .+.+++++++. |+.++++|||||||||+||+|+ ++++|++|+|++++.+. ..+..
T Consensus 2 I~~~nvsk~y~----~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMIN-rLiept~G~I~i~g~~i~~~d~~~LRr~ 76 (309)
T COG1125 2 IEFENVSKRYG----NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMIN-RLIEPTSGEILIDGEDISDLDPVELRRK 76 (309)
T ss_pred ceeeeeehhcC----CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHh-cccCCCCceEEECCeecccCCHHHHHHh
Confidence 45666666554 56777777775 9999999999999999999999 99999999999986552 23345
Q ss_pred cCcceeeeccccCCccccceeec-CCCCCCCHHhHHHHHHHHHHHhcccCCc--cccccccccccCCCCC
Q psy15138 247 SGRTSSVGNDILGFDSVGNVVNK-PEHGSLDWVKICERSAKVITFIDLAGHE--RYLKTTVFGMTGHVPD 313 (320)
Q Consensus 247 ~g~v~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~l~~l~l~gl~--~~~~~~~~~LSG~~~~ 313 (320)
+||+-|....++.+ ++.+++.. +....+....+++ ++.++++++|+. +|.+++|++|||++..
T Consensus 77 IGYviQqigLFPh~-Tv~eNIa~VP~L~~w~k~~i~~---r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQ 142 (309)
T COG1125 77 IGYVIQQIGLFPHL-TVAENIATVPKLLGWDKERIKK---RADELLDLVGLDPSEYADRYPHELSGGQQQ 142 (309)
T ss_pred hhhhhhhcccCCCc-cHHHHHHhhhhhcCCCHHHHHH---HHHHHHHHhCCCHHHHhhcCchhcCcchhh
Confidence 67777655544433 44444443 3334445555444 455566667764 5999999999998754
No 15
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.78 E-value=4e-20 Score=165.15 Aligned_cols=129 Identities=19% Similarity=0.109 Sum_probs=94.1
Q ss_pred eeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch------hhhhcCcceeeec
Q psy15138 185 LTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK------HEMESGRTSSVGN 255 (320)
Q Consensus 185 ~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~------~~~~~g~v~~~~~ 255 (320)
++.+|+.+.++++++|. |++++|+||||||||||||+|+ |+++|.+|+|.+++.+.. .....++++|.+.
T Consensus 8 ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~-g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~ 86 (258)
T COG1120 8 LSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLA-GLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPS 86 (258)
T ss_pred EEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHh-ccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCC
Confidence 34455667788888876 9999999999999999999999 999999999999876521 2234556666554
Q ss_pred cccCCccccceeecCCCCCCCHHh--HHHHHHHHHHHhcccCCccccccccccccCCCCCEE
Q psy15138 256 DILGFDSVGNVVNKPEHGSLDWVK--ICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFG 315 (320)
Q Consensus 256 ~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~~~ 315 (320)
...+ .++.+.+..+.....++.. .++..+.+.+.++.+|+.++.++.+.+|||++...+
T Consensus 87 ~~~~-~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv 147 (258)
T COG1120 87 APFG-LTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRV 147 (258)
T ss_pred CCCC-cEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHH
Confidence 3333 3667777777664433322 233344666778888889999999999999876544
No 16
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=2.2e-19 Score=161.55 Aligned_cols=132 Identities=14% Similarity=0.071 Sum_probs=94.9
Q ss_pred eeeeecCCCeeee-ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc---------ch
Q psy15138 176 LRQRKLDNGLTGQ-YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR---------HK 242 (320)
Q Consensus 176 ~~~~~~~~~~~~~-~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~---------~~ 242 (320)
++++++++.|... .....+++++++. |++++|+|.||||||||+|+|+ ++..|++|+|.+++.+ ..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN-~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLIN-LLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHh-ccCCCCCceEEEcCEecccCChHHHHH
Confidence 4566666555442 2235678888876 9999999999999999999999 9999999999998643 11
Q ss_pred hhhhcCcceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 243 HEMESGRTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 ~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.+.++|+++|.|..+. -.++.+++.++.. ...++. +..+++.++++++|+.++.+++|.+|||++-
T Consensus 81 ~R~~IGMIFQhFnLLs-srTV~~NvA~PLeiag~~k~---ei~~RV~elLelVgL~dk~~~yP~qLSGGQK 147 (339)
T COG1135 81 LRQKIGMIFQHFNLLS-SRTVFENVAFPLELAGVPKA---EIKQRVAELLELVGLSDKADRYPAQLSGGQK 147 (339)
T ss_pred HHhhccEEeccccccc-cchHHhhhhhhHhhcCCCHH---HHHHHHHHHHHHcCChhhhccCchhcCcchh
Confidence 2234566666554322 2466667766654 334444 3455666777788889999999999999764
No 17
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.78 E-value=2.1e-19 Score=166.38 Aligned_cols=130 Identities=16% Similarity=0.126 Sum_probs=92.0
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRT 250 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v 250 (320)
.++++++.+. |+...+++++++. |+.++|+||||||||||||+|+ |+.+|++|+|.+++.+-.. ....+.+
T Consensus 3 ~i~l~~v~K~----yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IA-GLe~~~~G~I~i~g~~vt~l~P~~R~i 77 (338)
T COG3839 3 ELELKNVRKS----FGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIA-GLEEPTSGEILIDGRDVTDLPPEKRGI 77 (338)
T ss_pred EEEEeeeEEE----cCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEECCCCChhHCCE
Confidence 3455554444 4332266666665 9999999999999999999999 9999999999998765221 2223455
Q ss_pred eeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 251 SSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 251 ~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
+.+||++..| .++.+|+.++.. ...+..++.+++.++.+. +++.++++++|.+|||++.
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~---L~l~~lL~r~P~~LSGGQr 139 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKL---LGLEHLLNRKPLQLSGGQR 139 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHH---cCChhHHhcCcccCChhhH
Confidence 6666666554 366777777654 445566666666655554 5558899999999999765
No 18
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=5.5e-20 Score=163.54 Aligned_cols=135 Identities=20% Similarity=0.192 Sum_probs=96.3
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh---hhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH---EMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~---~~~~g 248 (320)
.+++++++..| ....+++++++. |+.++|+||||||||||+|+|. |+++|.+|+|.+.+..... ..++|
T Consensus 4 ~i~v~nl~v~y----~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iL-Gll~p~~G~i~~~g~~~~~~~~~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSY----GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAIL-GLLKPSSGEIKIFGKPVRKRRKRLRIG 78 (254)
T ss_pred EEEEeeeEEEE----CCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCcCCcceEEEccccccccccCCeEE
Confidence 45566555444 422477777775 9999999999999999999999 9999999999988654222 24577
Q ss_pred cceeeeccccCC-ccccceeecCCCCCCCHHh--HHHHHHHHHHHhcccCCccccccccccccCCCCCE
Q psy15138 249 RTSSVGNDILGF-DSVGNVVNKPEHGSLDWVK--ICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDF 314 (320)
Q Consensus 249 ~v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~--~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~~ 314 (320)
|++|.....+.| .++.+.+..+.....++.. .++..+++.+.|+.+|+.++.++.+.+|||++...
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHH
Confidence 777765444445 4567777776554433321 12235667777888888999999999999976443
No 19
>PLN03073 ABC transporter F family; Provisional
Probab=99.75 E-value=9.4e-19 Score=178.65 Aligned_cols=245 Identities=14% Similarity=0.097 Sum_probs=139.3
Q ss_pred chhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHhhc---------CCCcccc----CccccccCCc
Q psy15138 52 VGMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRILK---------SPGCRKV----PVMNCLISPT 113 (320)
Q Consensus 52 ~~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~l~---------~~~~~~i----~~kl~~~~gn 113 (320)
.+..+.+++||++|-. |.++++ |++|..+..|+.+++.++..++. ...|+++ .+++..|.|+
T Consensus 346 SgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~~l~~g~i~~~~g~ 425 (718)
T PLN03073 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGD 425 (718)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCC
Confidence 4577889999999999 888888 99999999999999998855443 1345555 5677789999
Q ss_pred hhHHHHHHHHHHHHH---HcCcccceecccccCCCCCCC-CCHHHHHHHHHHHHHHHHhc-------------C----Cc
Q psy15138 114 EEQFDLLQKKIKSLI---DNGRGETIYDIGIGQDGGENG-LKPDEYEASVATLQSLATTL-------------E----AD 172 (320)
Q Consensus 114 yd~~~~l~~q~~~~~---~~~~~~~~~~ig~~~~~~~~~-l~~~~~~~~~~~l~~~~~~~-------------~----~~ 172 (320)
|+.|...+.+...++ .+...+...++....++.... ......++..+.++++.... . ..
T Consensus 426 ~~~~~~~~~~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~~~~~~s~~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (718)
T PLN03073 426 YDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASLVQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPG 505 (718)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhcchHHHHHhhhhccccCCCceeecCCCccCCC
Confidence 999987665432211 111111111111111000000 00112223333333322100 0 00
Q ss_pred eeeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCc
Q psy15138 173 CVLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGR 249 (320)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~ 249 (320)
..+++++++++.|. +...++++++|. |++++|+|||||||||||++|+ |+++|++|+|.+... ..+++
T Consensus 506 ~~~L~~~~ls~~y~---~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~-Gll~p~~G~I~~~~~-----~~igy 576 (718)
T PLN03073 506 PPIISFSDASFGYP---GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIS-GELQPSSGTVFRSAK-----VRMAV 576 (718)
T ss_pred CceEEEEeeEEEeC---CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHh-CCCCCCCceEEECCc-----eeEEE
Confidence 12455555544432 122356777765 9999999999999999999999 999999999987531 23555
Q ss_pred ceeeeccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138 250 TSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP 312 (320)
Q Consensus 250 v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~ 312 (320)
++|.+. ..+....+............ . ..++.++++.+|+. +..++++..|||++.
T Consensus 577 v~Q~~~--~~l~~~~~~~~~~~~~~~~~--~---~~~i~~~L~~~gl~~~~~~~~~~~LSgGqk 633 (718)
T PLN03073 577 FSQHHV--DGLDLSSNPLLYMMRCFPGV--P---EQKLRAHLGSFGVTGNLALQPMYTLSGGQK 633 (718)
T ss_pred Eecccc--ccCCcchhHHHHHHHhcCCC--C---HHHHHHHHHHCCCChHHhcCCccccCHHHH
Confidence 555321 11111111111100000000 0 12334556666666 467889999999654
No 20
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.75 E-value=2e-18 Score=145.34 Aligned_cols=129 Identities=21% Similarity=0.165 Sum_probs=95.7
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---------hh
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---------KH 243 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---------~~ 243 (320)
++++++++.|..+ ..++++++|. ||.+-|+||||||||||+|+|. +...|++|+|++++.+. ..
T Consensus 2 I~f~~V~k~Y~~g---~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~-~~e~pt~G~i~~~~~dl~~l~~~~iP~L 77 (223)
T COG2884 2 IRFENVSKAYPGG---REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIY-GEERPTRGKILVNGHDLSRLKGREIPFL 77 (223)
T ss_pred eeehhhhhhcCCC---chhhhCceEeecCceEEEEECCCCCCHHHHHHHHH-hhhcCCCceEEECCeecccccccccchh
Confidence 5778888777655 4566777665 9999999999999999999999 99999999999986541 12
Q ss_pred hhhcCcceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 244 EMESGRTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 244 ~~~~g~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
+..+|.++|++..... .++.+++.++.. ...+..+++ +++.+.++++|+.++.+..|.+|||++.
T Consensus 78 RR~IGvVFQD~rLL~~-~tvyeNVA~pL~v~G~~~~~i~---~rV~~~L~~VgL~~k~~~lP~~LSGGEQ 143 (223)
T COG2884 78 RRQIGVVFQDFRLLPD-RTVYENVALPLRVIGKPPREIR---RRVSEVLDLVGLKHKARALPSQLSGGEQ 143 (223)
T ss_pred hheeeeEeeecccccc-chHhhhhhhhhhccCCCHHHHH---HHHHHHHHHhccchhhhcCccccCchHH
Confidence 3346666666664433 356677776654 344444444 4556677788889999999999999754
No 21
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.75 E-value=7.4e-19 Score=154.11 Aligned_cols=132 Identities=17% Similarity=0.075 Sum_probs=84.7
Q ss_pred eeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc-------hhhhhc
Q psy15138 178 QRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH-------KHEMES 247 (320)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~-------~~~~~~ 247 (320)
++++.+.|..+.....+++++++. ||.++|+|||||||||||++|. |+..|++|.+.+.+.+. ....+.
T Consensus 4 ~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig-~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~ 82 (226)
T COG1136 4 LKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLG-GLDKPTSGEVLINGKDLTKLSEKELAKLRR 82 (226)
T ss_pred EeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHh-cccCCCCceEEECCEEcCcCCHHHHHHHHH
Confidence 344444343322235678888776 9999999999999999999999 99999999999886331 111233
Q ss_pred CcceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccc-cccccccCCCCC
Q psy15138 248 GRTSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLK-TTVFGMTGHVPD 313 (320)
Q Consensus 248 g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~-~~~~~LSG~~~~ 313 (320)
..++++||.+..+ .++.+++..+.. ...... ....++.++++.+|+.+... ++|++|||++..
T Consensus 83 ~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~---~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQ 149 (226)
T COG1136 83 KKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG---RRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQ 149 (226)
T ss_pred HhEEEECccCCCCCCCCHHHHHHhHHHHcCCChh---HHHHHHHHHHHhcCChhhhccCCchhcCHHHHH
Confidence 4445555554332 345555554432 222221 23344555666677786666 899999997643
No 22
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.3e-18 Score=156.22 Aligned_cols=122 Identities=17% Similarity=0.076 Sum_probs=82.6
Q ss_pred cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc---c----chhhhhcCcceeeeccccC
Q psy15138 190 LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF---R----HKHEMESGRTSSVGNDILG 259 (320)
Q Consensus 190 ~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~---~----~~~~~~~g~v~~~~~~~~~ 259 (320)
+...+++++++. |+.+|++||||||||||||+|+ |++.|++|.|.+++. + ..++.++|.++|.+.. +.
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIA-GLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YAL-F~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIA-GLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYAL-FP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHh-CcCCCCCceEEECCEeccchhccchhhcceeEEEechhh-cc
Confidence 334445555554 9999999999999999999999 999999999999865 3 2233345555554442 22
Q ss_pred CccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCCC
Q psy15138 260 FDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPD 313 (320)
Q Consensus 260 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~ 313 (320)
-.++.+++.++...........+...++.++++++.++...+++|.+|||++..
T Consensus 91 HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQ 144 (345)
T COG1118 91 HMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQ 144 (345)
T ss_pred cchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHH
Confidence 257788888876432111111223344445555666677888999999998753
No 23
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=5e-18 Score=157.97 Aligned_cols=90 Identities=27% Similarity=0.356 Sum_probs=81.7
Q ss_pred CCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCC-------CchhHHHHHHHHHHcCC-CcEEEEeCCCCC-
Q psy15138 11 TAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAG-------IVGMTKEHLGLALALSV-PVFVVVTKIDMC- 79 (320)
Q Consensus 11 ~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g-------~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~- 79 (320)
|....++|||+|||++|+ |++|++++|.++| ||+|+.| .++|||||+-||+.||| ..+|++||||+.
T Consensus 82 t~k~~~tIiDaPGHrdFvknmItGasqAD~aVL--VV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~ 159 (428)
T COG5256 82 TDKYNFTIIDAPGHRDFVKNMITGASQADVAVL--VVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVS 159 (428)
T ss_pred cCCceEEEeeCCchHHHHHHhhcchhhccEEEE--EEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccc
Confidence 456779999999999999 9999999999999 9999988 89999999999999999 799999999985
Q ss_pred -ChhHHHHHHHHHHHhhcCCCccc
Q psy15138 80 -PPNVLQDTLKLLVRILKSPGCRK 102 (320)
Q Consensus 80 -~~~~le~~l~~~~~~l~~~~~~~ 102 (320)
+++++++..+++..++++.+++.
T Consensus 160 wde~rf~ei~~~v~~l~k~~G~~~ 183 (428)
T COG5256 160 WDEERFEEIVSEVSKLLKMVGYNP 183 (428)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCc
Confidence 78899999999999777777764
No 24
>KOG0460|consensus
Probab=99.72 E-value=7.1e-18 Score=152.69 Aligned_cols=89 Identities=26% Similarity=0.294 Sum_probs=80.7
Q ss_pred CCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCC-ChhHHHH
Q psy15138 11 TAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMC-PPNVLQD 86 (320)
Q Consensus 11 ~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~-~~~~le~ 86 (320)
|+....+=+|+|||.+|+ ||+|++++|-++| ||+|++|+||||||||.||+-.|++ ++|.+||.|++ +++.+|.
T Consensus 114 Ta~RhYaH~DCPGHADYIKNMItGaaqMDGaIL--VVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leL 191 (449)
T KOG0460|consen 114 TAKRHYAHTDCPGHADYIKNMITGAAQMDGAIL--VVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLEL 191 (449)
T ss_pred ccccccccCCCCchHHHHHHhhcCccccCceEE--EEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHH
Confidence 556667789999999999 9999999999999 9999999999999999999999996 56667999999 8999999
Q ss_pred HHHHHHHhhcCCCcc
Q psy15138 87 TLKLLVRILKSPGCR 101 (320)
Q Consensus 87 ~l~~~~~~l~~~~~~ 101 (320)
+..++++.|..-+|+
T Consensus 192 VEmE~RElLse~gf~ 206 (449)
T KOG0460|consen 192 VEMEIRELLSEFGFD 206 (449)
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999998865555
No 25
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.71 E-value=7.8e-18 Score=139.59 Aligned_cols=134 Identities=17% Similarity=0.145 Sum_probs=85.1
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc-------chhh
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR-------HKHE 244 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~-------~~~~ 244 (320)
++++++.+..+........+++++++. |+.++|||||||||||||.+++ |+.+|++|++++.+.. ....
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlA-GLd~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLA-GLDDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHh-cCCCCCCceEEEcCcchhhcCHHHHHH
Confidence 444555544444434445566666664 9999999999999999999999 9999999999987543 1111
Q ss_pred hhcCcceeeeccccCCc--cccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 245 MESGRTSSVGNDILGFD--SVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 245 ~~~g~v~~~~~~~~~~~--~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.+.+.+..+||.+...+ +..+++..+.. ..-+..+....+. ++++.+|+.+++..+|.+|||+..
T Consensus 85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~---~lL~~vGLg~Rl~HyP~qLSGGEQ 152 (228)
T COG4181 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAK---ALLEAVGLGKRLTHYPAQLSGGEQ 152 (228)
T ss_pred hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHH---HHHHHhCcccccccCccccCchHH
Confidence 23344455555544432 23344444432 2211222222333 455667889999999999999754
No 26
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.71 E-value=2.5e-17 Score=164.71 Aligned_cols=245 Identities=12% Similarity=0.055 Sum_probs=136.8
Q ss_pred chhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHhhc---------CCCcccc----CccccccCCc
Q psy15138 52 VGMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRILK---------SPGCRKV----PVMNCLISPT 113 (320)
Q Consensus 52 ~~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~l~---------~~~~~~i----~~kl~~~~gn 113 (320)
.+..+.+++||+++-. |.++++ |++|..+..|+.+.+.++..++. ...|+++ .+++..+.|+
T Consensus 163 SgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~ 242 (552)
T TIGR03719 163 SGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGN 242 (552)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCC
Confidence 3677889999999999 778888 99999999999999888755433 1334444 5566678999
Q ss_pred hhHHHHHHHHHHHHHH---cCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCC----------------cee
Q psy15138 114 EEQFDLLQKKIKSLID---NGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEA----------------DCV 174 (320)
Q Consensus 114 yd~~~~l~~q~~~~~~---~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~----------------~~~ 174 (320)
|+.|.+.+....+.+. +...+.+.+......... .......+...++++++.+.... ...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (552)
T TIGR03719 243 YSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSP-KARQAKSKARLARYEELLSQEFQKRNETAEIYIPPGPRLGDK 321 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhhhhcccccCCCceeecCCCCCCCCe
Confidence 9998775543221111 000000000000000000 00011111222222221110000 012
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcce
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTS 251 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~ 251 (320)
.+++++++ ..|+.+.+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+.. ...+++++
T Consensus 322 ~l~~~~l~----~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~-G~~~p~~G~i~~~~-----~~~i~~v~ 391 (552)
T TIGR03719 322 VIEAENLS----KGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMIT-GQEQPDSGTIKIGE-----TVKLAYVD 391 (552)
T ss_pred EEEEeeEE----EEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHc-CCCCCCCeEEEECC-----ceEEEEEe
Confidence 34444433 334445577777776 9999999999999999999999 99999999998732 11355555
Q ss_pred eeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCcc-ccccccccccCCCC
Q psy15138 252 SVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHER-YLKTTVFGMTGHVP 312 (320)
Q Consensus 252 ~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~-~~~~~~~~LSG~~~ 312 (320)
|.+.......++.+++..+.. ...... ... ..++++.+|+.. ..++++..|||++.
T Consensus 392 q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~---~~~~l~~~~l~~~~~~~~~~~LSgGe~ 449 (552)
T TIGR03719 392 QSRDALDPNKTVWEEISGGLDIIQLGKR--EVP---SRAYVGRFNFKGSDQQKKVGQLSGGER 449 (552)
T ss_pred CCccccCCCCcHHHHHHhhccccccCcc--hHH---HHHHHHhCCCChhHhcCchhhCCHHHH
Confidence 543211211234444433221 111111 111 224555667653 57889999999653
No 27
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.70 E-value=7.7e-17 Score=161.31 Aligned_cols=245 Identities=12% Similarity=0.053 Sum_probs=137.2
Q ss_pred chhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHhhc---------CCCcccc----CccccccCCc
Q psy15138 52 VGMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRILK---------SPGCRKV----PVMNCLISPT 113 (320)
Q Consensus 52 ~~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~l~---------~~~~~~i----~~kl~~~~gn 113 (320)
.+..+.++.||+++-. |.++++ |.+|..+..|+.+.+.++..++. ...|+++ .+++..|.|+
T Consensus 165 SgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~ 244 (556)
T PRK11819 165 SGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGN 244 (556)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCC
Confidence 3577889999999999 778887 99999999999999988765443 1334444 5566668999
Q ss_pred hhHHHHHHHHHHHHH---HcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhc------------CC----cee
Q psy15138 114 EEQFDLLQKKIKSLI---DNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTL------------EA----DCV 174 (320)
Q Consensus 114 yd~~~~l~~q~~~~~---~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~------------~~----~~~ 174 (320)
|+.|.+.+.....+. .+...+.+.++.........+ .....+...++++++.... .. ...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (556)
T PRK11819 245 YSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPKA-RQAKSKARLARYEELLSEEYQKRNETNEIFIPPGPRLGDK 323 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHhhcccccccCCCceeecCCCCCCCCe
Confidence 999866544221110 000000010000000000000 0111222223332221100 00 012
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcce
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTS 251 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~ 251 (320)
++++++++. .|+...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+.. ...+|+++
T Consensus 324 ~l~~~~l~~----~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~-G~~~p~~G~i~~~~-----~~~i~~v~ 393 (556)
T PRK11819 324 VIEAENLSK----SFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMIT-GQEQPDSGTIKIGE-----TVKLAYVD 393 (556)
T ss_pred EEEEEeEEE----EECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCeEEEECC-----ceEEEEEe
Confidence 455555443 33445577777775 9999999999999999999999 99999999998742 12355555
Q ss_pred eeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCcc-ccccccccccCCCC
Q psy15138 252 SVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHER-YLKTTVFGMTGHVP 312 (320)
Q Consensus 252 ~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~-~~~~~~~~LSG~~~ 312 (320)
|....+....++.+++..... ...... ... ...+++.+|+.. ..++.+.+|||++.
T Consensus 394 q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~---~~~~l~~~~l~~~~~~~~~~~LSgG~~ 451 (556)
T PRK11819 394 QSRDALDPNKTVWEEISGGLDIIKVGNR--EIP---SRAYVGRFNFKGGDQQKKVGVLSGGER 451 (556)
T ss_pred CchhhcCCCCCHHHHHHhhccccccccc--HHH---HHHHHHhCCCChhHhcCchhhCCHHHH
Confidence 543111111234444433211 111111 111 223555666653 57889999999653
No 28
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1e-16 Score=159.61 Aligned_cols=244 Identities=15% Similarity=0.115 Sum_probs=135.2
Q ss_pred chhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHhhc--C-------CCcccc----CccccccCCc
Q psy15138 52 VGMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRILK--S-------PGCRKV----PVMNCLISPT 113 (320)
Q Consensus 52 ~~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~l~--~-------~~~~~i----~~kl~~~~gn 113 (320)
.+..+.+++||+++-. |.++++ |.+|..+..|+.+.+.+...++. + ..|+++ .+++..+.|+
T Consensus 157 SgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~ 236 (530)
T PRK15064 157 APGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGN 236 (530)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCC
Confidence 3577789999999999 788888 99999999999998876433332 1 335544 4566568999
Q ss_pred hhHHHHHHHHHHHHHHcCc---ccceecccccCCC-CCCCCCHHHHHHHHHHHHHHHH-hc-C----Cc-----------
Q psy15138 114 EEQFDLLQKKIKSLIDNGR---GETIYDIGIGQDG-GENGLKPDEYEASVATLQSLAT-TL-E----AD----------- 172 (320)
Q Consensus 114 yd~~~~l~~q~~~~~~~~~---~~~~~~ig~~~~~-~~~~l~~~~~~~~~~~l~~~~~-~~-~----~~----------- 172 (320)
|+.|.+.++....++.+.. .+.+.++.....+ ..............+++..+.. .. . ..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (530)
T PRK15064 237 YDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQIDKIKLEEVKPSSRQNPFIRFEQDKKLH 316 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhhccccccCCccccCceeeCCCCCCCC
Confidence 9998765553322211100 0000000000000 0000011112222222222110 00 0 00
Q ss_pred eeeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCc
Q psy15138 173 CVLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGR 249 (320)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~ 249 (320)
-..++++++++. |+...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+... ..+|+
T Consensus 317 ~~~l~~~~l~~~----~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~-G~~~p~~G~i~~~~~-----~~i~~ 386 (530)
T PRK15064 317 RNALEVENLTKG----FDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLV-GELEPDSGTVKWSEN-----ANIGY 386 (530)
T ss_pred CceEEEEeeEEe----eCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCeEEEECCc-----eEEEE
Confidence 013455554433 3334567777775 9999999999999999999999 999999999987642 22455
Q ss_pred ceeeecc-ccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138 250 TSSVGND-ILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP 312 (320)
Q Consensus 250 v~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~ 312 (320)
++|.+.. +....+..+++... .. .. . ...++.++++.+|+. +..++++.+|||++.
T Consensus 387 ~~q~~~~~~~~~~t~~~~~~~~--~~-~~-~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 444 (530)
T PRK15064 387 YAQDHAYDFENDLTLFDWMSQW--RQ-EG-D---DEQAVRGTLGRLLFSQDDIKKSVKVLSGGEK 444 (530)
T ss_pred EcccccccCCCCCcHHHHHHHh--cc-CC-c---cHHHHHHHHHHcCCChhHhcCcccccCHHHH
Confidence 5554321 11111233322211 00 00 1 112344556666663 678899999999653
No 29
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.70 E-value=2.7e-17 Score=146.31 Aligned_cols=133 Identities=23% Similarity=0.251 Sum_probs=95.5
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-------hh
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-------HE 244 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-------~~ 244 (320)
.++++++.+.|..+ ..+++++++. |++++|+||||||||||+++++ |+++|.+|.|.+++.... ..
T Consensus 3 ~i~~~~l~~~y~~~---~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~-GLl~p~~G~v~~~g~~~~~~~~~~~~~ 78 (235)
T COG1122 3 MIEAENLSFRYPGR---KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLN-GLLKPTSGEVLVDGLDTSSEKSLLELR 78 (235)
T ss_pred eEEEEEEEEEcCCC---ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHc-CcCcCCCCEEEECCeeccchhhHHHhh
Confidence 34556655555443 3556666654 9999999999999999999999 999999999988764321 23
Q ss_pred hhcCcceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCCCE
Q psy15138 245 MESGRTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDF 314 (320)
Q Consensus 245 ~~~g~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~~ 314 (320)
...|+++|.+..++.-+++.+.+.++.. ...+..++.+++. +.+..+|+.+++++.|+.|||++-..
T Consensus 79 ~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~---~~l~~vgl~~~~~r~p~~LSGGqkqR 146 (235)
T COG1122 79 QKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVA---EALELVGLEELLDRPPFNLSGGQKQR 146 (235)
T ss_pred cceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHH---HHHHHcCchhhccCCccccCCcceee
Confidence 3467778877776666777776766554 4555555544444 45556777888999999999976543
No 30
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.69 E-value=1.5e-17 Score=145.46 Aligned_cols=134 Identities=18% Similarity=0.217 Sum_probs=90.3
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh----hhhc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH----EMES 247 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~----~~~~ 247 (320)
.+.+++.+..|........++++++|. |++++|+|+||||||||.++|+ |+.+|++|+|.+++..... ....
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~-Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLA-GLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHh-cccCCCCceEEECCcccCccccchhhc
Confidence 355565555554433334588998886 9999999999999999999999 9999999999998754211 1234
Q ss_pred CcceeeeccccC-C---ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCC-ccccccccccccCCCCC
Q psy15138 248 GRTSSVGNDILG-F---DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGH-ERYLKTTVFGMTGHVPD 313 (320)
Q Consensus 248 g~v~~~~~~~~~-~---~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl-~~~~~~~~~~LSG~~~~ 313 (320)
+.+..+||++.. + .+++..+..+.... +.. +...++.++++.+|+ ..+++++|++|||++..
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~-~~~---~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~Q 148 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPH-GLS---KSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQ 148 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccC-Ccc---HHHHHHHHHHHHcCCCHHHHhcCchhcChhHHH
Confidence 556666666544 2 34444444443321 111 122335566677777 47899999999998653
No 31
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=2.2e-17 Score=143.53 Aligned_cols=134 Identities=19% Similarity=0.141 Sum_probs=94.0
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc---------ch
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR---------HK 242 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~---------~~ 242 (320)
.+++++++..|. +..++++++++. ||.++|+||||||||||||+|+ |+.+|++|+|.+++.+ ..
T Consensus 3 ~i~~~nl~k~yp---~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~ln-gl~d~t~G~i~~~g~~i~~~~~k~lr~ 78 (258)
T COG3638 3 MIEVKNLSKTYP---GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLN-GLVDPTSGEILFNGVQITKLKGKELRK 78 (258)
T ss_pred eEEEeeeeeecC---CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHh-cccCCCcceEEecccchhccchHHHHH
Confidence 466666665554 445667777665 9999999999999999999999 9999999999988533 12
Q ss_pred hhhhcCcceeeeccccCCccccceeecCCCCCCCHHh------HHHHHHHHHHHhcccCCccccccccccccCCCCC
Q psy15138 243 HEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVK------ICERSAKVITFIDLAGHERYLKTTVFGMTGHVPD 313 (320)
Q Consensus 243 ~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~ 313 (320)
....+|+++|.+...... ++..++..+.....++.. -++....+++.|+.+|+.++.-+..++|||++..
T Consensus 79 ~r~~iGmIfQ~~nLv~r~-sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQ 154 (258)
T COG3638 79 LRRDIGMIFQQFNLVPRL-SVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQ 154 (258)
T ss_pred HHHhceeEeccCCccccc-HHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhH
Confidence 233467777766544433 344455554443332211 1234566778888899999999999999997653
No 32
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.9e-16 Score=148.52 Aligned_cols=111 Identities=19% Similarity=0.215 Sum_probs=94.9
Q ss_pred CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCChhHHHHHH
Q psy15138 12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCPPNVLQDTL 88 (320)
Q Consensus 12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~~~~le~~l 88 (320)
+++.++|||+|||+||+ |++|++.+|+++| ||++|+|+++||.|||.++..++++ .++|+||+|.+++.++++..
T Consensus 48 ~d~~~~fIDvpgh~~~i~~miag~~~~d~alL--vV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i 125 (447)
T COG3276 48 EDGVMGFIDVPGHPDFISNLLAGLGGIDYALL--VVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKI 125 (447)
T ss_pred CCCceEEeeCCCcHHHHHHHHhhhcCCceEEE--EEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHH
Confidence 45689999999999999 9999999999999 9999999999999999999999995 69999999999999999998
Q ss_pred HHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHH
Q psy15138 89 KLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLI 128 (320)
Q Consensus 89 ~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~ 128 (320)
+++...+. +...+. +.....+.+.+++|+..+....
T Consensus 126 ~~Il~~l~---l~~~~i-~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 126 KQILADLS---LANAKI-FKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred HHHHhhcc---cccccc-cccccccCCCHHHHHHHHHHhh
Confidence 88887654 333332 3344577778999998887654
No 33
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.67 E-value=1.1e-16 Score=139.63 Aligned_cols=131 Identities=20% Similarity=0.115 Sum_probs=90.6
Q ss_pred eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch------hh
Q psy15138 174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK------HE 244 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~------~~ 244 (320)
.+++++++. ..++.+.+++++++. |+.++|+||||||||||||+|. |+++|++|+|++.+.+.. ..
T Consensus 7 ~~I~vr~v~----~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~-Gll~P~~GeI~i~G~~i~~ls~~~~~ 81 (263)
T COG1127 7 PLIEVRGVT----KSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLIL-GLLRPDKGEILIDGEDIPQLSEEELY 81 (263)
T ss_pred ceEEEeeee----eecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHh-ccCCCCCCeEEEcCcchhccCHHHHH
Confidence 356666554 445667778887776 9999999999999999999999 999999999999865511 11
Q ss_pred hhcCcceeeeccccCC--ccccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCCccc-cccccccccCCCC
Q psy15138 245 MESGRTSSVGNDILGF--DSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGHERY-LKTTVFGMTGHVP 312 (320)
Q Consensus 245 ~~~g~v~~~~~~~~~~--~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~~~-~~~~~~~LSG~~~ 312 (320)
....+++..||.-..| .++.+|+.++.. ..++...++ +-++..++++|+... .+.+|++|||+..
T Consensus 82 ~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~---~lv~~KL~~VGL~~~~~~~~PsELSGGM~ 151 (263)
T COG1127 82 EIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIR---ELVLMKLELVGLRGAAADLYPSELSGGMR 151 (263)
T ss_pred HHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHH---HHHHHHHHhcCCChhhhhhCchhhcchHH
Confidence 1122334444443333 456777777654 334444433 334556677888766 8999999999753
No 34
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.66 E-value=1e-16 Score=134.20 Aligned_cols=110 Identities=22% Similarity=0.158 Sum_probs=81.4
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhh-hcCcceeeeccccCC--ccccceeecCCCCCCCH
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEM-ESGRTSSVGNDILGF--DSVGNVVNKPEHGSLDW 277 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~-~~g~v~~~~~~~~~~--~~~~~~v~~~~~~~~~~ 277 (320)
.|+++||+|||||||||||++|+ |++.|.+|+|++++.++.... ...-++..||+...| .++..++..+....+..
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIA-GF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL 102 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIA-GFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKL 102 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHH-hccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccccc
Confidence 39999999999999999999999 999999999999977654322 234466777776555 45666776666544433
Q ss_pred HhHHHHHHHHHHHhcccCCccccccccccccCCCCC
Q psy15138 278 VKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPD 313 (320)
Q Consensus 278 ~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~ 313 (320)
.. +..+++...+..+|+..+.++.|.+|||++..
T Consensus 103 ~a--~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQ 136 (231)
T COG3840 103 NA--EQREKVEAAAAQVGLAGFLKRLPGELSGGQRQ 136 (231)
T ss_pred CH--HHHHHHHHHHHHhChhhHhhhCccccCchHHH
Confidence 22 22344555566678899999999999998754
No 35
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.64 E-value=7.4e-17 Score=141.16 Aligned_cols=126 Identities=17% Similarity=0.174 Sum_probs=93.0
Q ss_pred CeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc----chhh---hhcCcceee
Q psy15138 184 GLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR----HKHE---MESGRTSSV 253 (320)
Q Consensus 184 ~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~----~~~~---~~~g~v~~~ 253 (320)
++++.|+...++++++|. |++++|+||||||||||+++|+ |.++|++|+|.+.+.+ ..+. .-+.+++|+
T Consensus 9 ~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlit-G~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~ 87 (250)
T COG0411 9 GLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLIT-GFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQI 87 (250)
T ss_pred cceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeec-ccccCCCceEEECCcccCCCCHHHHHhccceeeccc
Confidence 566778889999999997 9999999999999999999999 9999999999998664 2222 234667777
Q ss_pred eccccCCccccceeecCCCC--------CC--CHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 254 GNDILGFDSVGNVVNKPEHG--------SL--DWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 254 ~~~~~~~~~~~~~v~~~~~~--------~~--~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
.+-+..+ ++.+++..+... .. ...+..+..+++.++++.+|+.++.+.....||+++
T Consensus 88 ~rlF~~l-TVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~ 154 (250)
T COG0411 88 TRLFPGL-TVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQ 154 (250)
T ss_pred ccccCCC-cHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhH
Confidence 7655444 444454443221 11 112334456677788888888999999999999864
No 36
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.62 E-value=3.1e-16 Score=141.48 Aligned_cols=115 Identities=19% Similarity=0.190 Sum_probs=84.4
Q ss_pred ccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc-------chhhhhcCcceeeeccccCC--c
Q psy15138 194 RVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR-------HKHEMESGRTSSVGNDILGF--D 261 (320)
Q Consensus 194 ~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~-------~~~~~~~g~v~~~~~~~~~~--~ 261 (320)
.+++.++. |++++|+|-||||||||+|+|+ ++.+|++|+|.+++.+ ...+.++..++.+||.+-.+ .
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~N-rLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLN-RLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHh-ccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 34555554 9999999999999999999999 9999999999998654 12234455667777765444 3
Q ss_pred cccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 262 SVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 262 ~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
++.+++.++.. ...+.. ++.+++.+.++++|+..+.+++|++|||+..
T Consensus 122 tVl~Nv~fGLev~Gv~~~---er~~~a~~~l~~VgL~~~~~~yp~eLSGGMq 170 (386)
T COG4175 122 TVLENVAFGLEVQGVPKA---EREERALEALELVGLEGYADKYPNELSGGMQ 170 (386)
T ss_pred hHhhhhhcceeecCCCHH---HHHHHHHHHHHHcCchhhhhcCcccccchHH
Confidence 44555555443 344443 4556666777788889999999999999754
No 37
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.62 E-value=1.7e-16 Score=149.20 Aligned_cols=133 Identities=13% Similarity=0.044 Sum_probs=87.3
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh------hhh
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH------EME 246 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~------~~~ 246 (320)
++++++++.|........++++++|. |++++|+||||||||||+|+|+ |+++|++|+|.+++.+... ...
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~-gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN-LLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 45566555553111123577777775 9999999999999999999999 9999999999998654211 111
Q ss_pred cCcceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 247 SGRTSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 247 ~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
...++.++|+...+ .++.+++.++.. ......+ ..+++.++++.+|+.++.+++|.+|||++.
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~---~~~~v~e~l~~vgL~~~~~~~~~~LSgGqk 146 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDE---IKRKVTELLALVGLGDKHDSYPSNLSGGQK 146 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHH---HHHHHHHHHHHcCCchhhhCChhhCCHHHH
Confidence 33455555554333 345555554332 1222222 234455677778888899999999999653
No 38
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.62 E-value=4.1e-16 Score=131.99 Aligned_cols=122 Identities=19% Similarity=0.193 Sum_probs=87.3
Q ss_pred eeeeccee--ccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc-hhhhhcCcceeeeccccC
Q psy15138 186 TGQYLLRK--RVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH-KHEMESGRTSSVGNDILG 259 (320)
Q Consensus 186 ~~~~~~~~--~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~-~~~~~~g~v~~~~~~~~~ 259 (320)
..+|+.+. +++++++. |+.++++|||||||||||++++ |+.+|..|+|.+++.+. .....+|.++|....+.
T Consensus 10 sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~A-Gf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlP- 87 (259)
T COG4525 10 SLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIA-GFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLP- 87 (259)
T ss_pred EEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHh-cCcCcccceEEECCEeccCCCccceeEeccCccch-
Confidence 34444333 67777665 9999999999999999999999 99999999999986542 22345677777655433
Q ss_pred CccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 260 FDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 260 ~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
+.+.-+|+.++.. ..+.+.. +.+.+.+++.++|+.++.++++-+|||++.
T Consensus 88 Wl~~~dNvafgL~l~Gi~k~~---R~~~a~q~l~~VgL~~~~~~~i~qLSGGmr 138 (259)
T COG4525 88 WLNVIDNVAFGLQLRGIEKAQ---RREIAHQMLALVGLEGAEHKYIWQLSGGMR 138 (259)
T ss_pred hhHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHhCcccccccceEeecchHH
Confidence 3345556655543 4444443 445555677778888888999999999764
No 39
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.61 E-value=1.4e-15 Score=147.72 Aligned_cols=140 Identities=23% Similarity=0.218 Sum_probs=93.2
Q ss_pred eeeeeeeecCCCeeee-------ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc--
Q psy15138 173 CVLLRQRKLDNGLTGQ-------YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR-- 240 (320)
Q Consensus 173 ~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~-- 240 (320)
..+++++++...|... ....+++++++|. ||+++|||+||||||||.|+|+ |+++|++|.+.+.+.+
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~-gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILA-GLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEEeCcccc
Confidence 3566777776666531 1245778999887 9999999999999999999999 9999999999997654
Q ss_pred ---chhhhhcCcceeeeccccC-C---ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCcc-ccccccccccCCCC
Q psy15138 241 ---HKHEMESGRTSSVGNDILG-F---DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHER-YLKTTVFGMTGHVP 312 (320)
Q Consensus 241 ---~~~~~~~g~v~~~~~~~~~-~---~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~-~~~~~~~~LSG~~~ 312 (320)
.........+..+||++.. + .++++.+..+........ ..+..+++.++++++|+.. +++++|++|||++.
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~-~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQr 435 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGS-GAERRARVAELLELVGLPPEFLDRYPHELSGGQR 435 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccc-hHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchh
Confidence 1111123344555665543 2 234444444332111111 2233445667777777765 89999999999875
Q ss_pred CE
Q psy15138 313 DF 314 (320)
Q Consensus 313 ~~ 314 (320)
..
T Consensus 436 QR 437 (539)
T COG1123 436 QR 437 (539)
T ss_pred HH
Confidence 43
No 40
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.61 E-value=9.5e-16 Score=148.87 Aligned_cols=110 Identities=18% Similarity=0.177 Sum_probs=89.0
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCC-CchhHHHHHHHHHHcCCC-cEEEEeCCCCCChhHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAG-IVGMTKEHLGLALALSVP-VFVVVTKIDMCPPNVLQDTLK 89 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g-~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~~~~le~~l~ 89 (320)
..++|||+|||++|+ |++|++++|.+++ ||+|++| +++||+||+.++.+++++ .++++||+|+++.+|+++..+
T Consensus 117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alL--VVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ 194 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATMLNGAAVMDAALL--LIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYE 194 (460)
T ss_pred ceEeeeeCCCHHHHHHHHHHHHhhCCEEEE--EEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHH
Confidence 468999999999999 9999999999999 9999997 799999999999999995 788999999999999999889
Q ss_pred HHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHH
Q psy15138 90 LLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSL 127 (320)
Q Consensus 90 ~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~ 127 (320)
++++.+........ .+. .+.-+.+..+.|++.+...
T Consensus 195 ei~~~l~~~~~~~~--~iipVSA~~G~nI~~Ll~~L~~~ 231 (460)
T PTZ00327 195 EIRNFVKGTIADNA--PIIPISAQLKYNIDVVLEYICTQ 231 (460)
T ss_pred HHHHHHHhhccCCC--eEEEeeCCCCCCHHHHHHHHHhh
Confidence 99887654222221 222 2335556677777776643
No 41
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.61 E-value=2.4e-15 Score=149.49 Aligned_cols=220 Identities=14% Similarity=0.128 Sum_probs=125.2
Q ss_pred hhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHh----hc--C-------CCcccc----Ccccccc
Q psy15138 53 GMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRI----LK--S-------PGCRKV----PVMNCLI 110 (320)
Q Consensus 53 ~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~----l~--~-------~~~~~i----~~kl~~~ 110 (320)
+..+.+++||+++-. |.++++ |.+|..+..|+.+.+.++.+. +. + ..|+++ .+++ .+
T Consensus 171 gGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i-~~ 249 (520)
T TIGR03269 171 GGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEI-KE 249 (520)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEE-ee
Confidence 567789999999999 788888 999999999998888887432 11 1 233433 2333 23
Q ss_pred CCchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeee-ee
Q psy15138 111 SPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTG-QY 189 (320)
Q Consensus 111 ~gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 189 (320)
.|+++.+.+.. .... . .+ ... ........++++++++..|.. ..
T Consensus 250 ~g~~~~~~~~~---~~~~----~----~~-----------------------~~~-~~~~~~~~~l~~~~l~~~~~~~~~ 294 (520)
T TIGR03269 250 EGTPDEVVAVF---MEGV----S----EV-----------------------EKE-CEVEVGEPIIKVRNVSKRYISVDR 294 (520)
T ss_pred ecCHHHHHHHH---Hhhc----h----hh-----------------------ccc-cccCCCCceEEEeccEEEeccCCC
Confidence 46666543210 0000 0 00 000 000011235777777665531 00
Q ss_pred cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec-ccc------ch---hhhhcCcceeeecc
Q psy15138 190 LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK-LFR------HK---HEMESGRTSSVGND 256 (320)
Q Consensus 190 ~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~-~~~------~~---~~~~~g~v~~~~~~ 256 (320)
+...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.++ +.. .. .......++.++|.
T Consensus 295 ~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~-Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~ 373 (520)
T TIGR03269 295 GVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIA-GVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQE 373 (520)
T ss_pred CCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccC
Confidence 123467777765 9999999999999999999999 9999999999984 321 00 00111224444444
Q ss_pred ccCC--ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCcc-----ccccccccccCCCC
Q psy15138 257 ILGF--DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHER-----YLKTTVFGMTGHVP 312 (320)
Q Consensus 257 ~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~-----~~~~~~~~LSG~~~ 312 (320)
...+ .++.+++............. ..++.++++.+|+.+ +.++++.+|||++.
T Consensus 374 ~~l~~~~tv~e~l~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~ 433 (520)
T TIGR03269 374 YDLYPHRTVLDNLTEAIGLELPDELA---RMKAVITLKMVGFDEEKAEEILDKYPDELSEGER 433 (520)
T ss_pred cccCCCCcHHHHHHHHHHcCCCHHHH---HHHHHHHHHhCCCCCccchhhhhCChhhCCHHHH
Confidence 3222 23444443211111111111 233445555566643 67899999999654
No 42
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=6.4e-16 Score=145.91 Aligned_cols=130 Identities=14% Similarity=0.128 Sum_probs=86.9
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRT 250 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v 250 (320)
.++++++++.| +...+++++++. |++++|+|||||||||||++|+ |+++|++|+|.+++..... ......+
T Consensus 6 ~l~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~Ia-Gl~~p~~G~I~~~g~~i~~~~~~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRF----GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVA-GLEKPTEGQIFIDGEDVTHRSIQQRDI 80 (351)
T ss_pred EEEEEeEEEEE----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHH-CCCCCCceEEEECCEECCCCCHHHCCE
Confidence 56666655444 334567777765 9999999999999999999999 9999999999998654211 1112344
Q ss_pred eeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 251 SSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 251 ~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
+.++|++..| .++.+++.++.. ......+. .+++.++++++|+.++.+++|.+|||++.
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~---~~~v~~~l~~~gl~~~~~r~~~~LSgGq~ 142 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEER---KQRVKEALELVDLAGFEDRYVDQISGGQQ 142 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHH---HHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence 5555554444 355666665432 22233332 34455666667778888999999999653
No 43
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.60 E-value=8.9e-16 Score=146.01 Aligned_cols=131 Identities=14% Similarity=0.124 Sum_probs=86.5
Q ss_pred eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-hhhhcCc
Q psy15138 174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-HEMESGR 249 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-~~~~~g~ 249 (320)
..++++++.+.| +...+++++++. |++++|+|||||||||||++|+ |+++|++|+|.+++.+.. .......
T Consensus 13 ~~L~l~~l~~~~----~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~Ia-Gl~~p~~G~I~~~g~~i~~~~~~~r~ 87 (375)
T PRK09452 13 PLVELRGISKSF----DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIA-GFETPDSGRIMLDGQDITHVPAENRH 87 (375)
T ss_pred ceEEEEEEEEEE----CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHh-CCCCCCceEEEECCEECCCCCHHHCC
Confidence 456777665544 334566666665 9999999999999999999999 999999999999865421 1111223
Q ss_pred ceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 250 TSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 250 v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
+.+++|+...| .++.+++.++.. ......+ ...++.++++++|+.++.+++|.+|||++.
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~ 150 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAE---ITPRVMEALRMVQLEEFAQRKPHQLSGGQQ 150 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHH---HHHHHHHHHHHcCCchhhhCChhhCCHHHH
Confidence 44445544333 355666655432 1222222 233455666677778899999999999654
No 44
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.60 E-value=5.8e-16 Score=146.34 Aligned_cols=130 Identities=15% Similarity=0.118 Sum_probs=87.0
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRT 250 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v 250 (320)
.++++++++.| +...++++++|. |++++|+|||||||||||++|+ |+++|++|+|.+++..... ......+
T Consensus 4 ~l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~ia-Gl~~p~~G~I~i~g~~~~~~~~~~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRF----GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIA-GLERQTAGTIYQGGRDITRLPPQKRDY 78 (353)
T ss_pred EEEEEEEEEEe----CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHH-CCCCCCceEEEECCEECCCCCHHHCCE
Confidence 35566554444 334566776665 9999999999999999999999 9999999999998654211 1112345
Q ss_pred eeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 251 SSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 251 ~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
+.++|++..| .++.+++.++.. ......+. ..++.++++.+|+.++.+++|.+|||++.
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~---~~~~~~~l~~l~L~~~~~~~~~~LSgGq~ 140 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEV---AERVAELLDLVGLPGSERKYPGQLSGGQQ 140 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHcCCCchhhCChhhCCHHHH
Confidence 5556655444 355666655432 12223332 33455666677778899999999999653
No 45
>KOG0458|consensus
Probab=99.60 E-value=1.3e-15 Score=146.68 Aligned_cols=100 Identities=25% Similarity=0.305 Sum_probs=86.2
Q ss_pred CCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCC-------chhHHHHHHHHHHcCC-CcEEEEeCCCCC-
Q psy15138 11 TAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGI-------VGMTKEHLGLALALSV-PVFVVVTKIDMC- 79 (320)
Q Consensus 11 ~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~-------~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~- 79 (320)
|....++++|+|||.+|+ |++|++++|+++| ||+++.|. .+|||||+.|++.||| ..+|++||||++
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avL--vvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVL--VVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVS 329 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEE--EEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccC
Confidence 456779999999999999 9999999999999 99998554 4799999999999999 799999999995
Q ss_pred -ChhHHHHHHHHHHHhh-cCCCccccCccccccCC
Q psy15138 80 -PPNVLQDTLKLLVRIL-KSPGCRKVPVMNCLISP 112 (320)
Q Consensus 80 -~~~~le~~l~~~~~~l-~~~~~~~i~~kl~~~~g 112 (320)
+.++++++.+.+..+| ++.++..-..+++..+|
T Consensus 330 Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSG 364 (603)
T KOG0458|consen 330 WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISG 364 (603)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCcccCCcceEeccc
Confidence 8999999999999999 56666665555555553
No 46
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=6.5e-16 Score=146.18 Aligned_cols=130 Identities=16% Similarity=0.093 Sum_probs=85.9
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcce
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTS 251 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~ 251 (320)
++++++++.|. +...+++++++. |++++|+|||||||||||++|+ |+++|++|+|.+++.+... ......++
T Consensus 4 l~i~~l~~~~~---~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~ia-Gl~~p~~G~I~~~g~~i~~~~~~~r~ig 79 (356)
T PRK11650 4 LKLQAVRKSYD---GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVA-GLERITSGEIWIGGRVVNELEPADRDIA 79 (356)
T ss_pred EEEEeEEEEeC---CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHH-CCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 45555544441 234566777765 9999999999999999999999 9999999999998654211 11123445
Q ss_pred eeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 252 SVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 252 ~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.++|+...| .++.+++.++.. ......+. ..++.++++.+|+.++.+++|.+|||++.
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~---~~~~~~~l~~~gL~~~~~~~~~~LSgGq~ 140 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEI---EERVAEAARILELEPLLDRKPRELSGGQR 140 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHH---HHHHHHHHHHcCChhHhhCChhhCCHHHH
Confidence 555554443 355666655432 12222222 23455666677778899999999999654
No 47
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=1.4e-15 Score=130.35 Aligned_cols=123 Identities=18% Similarity=0.128 Sum_probs=83.2
Q ss_pred eeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc------hhhhhcCcceeeec
Q psy15138 185 LTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH------KHEMESGRTSSVGN 255 (320)
Q Consensus 185 ~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~------~~~~~~g~v~~~~~ 255 (320)
++.....++.++++++. ||.++|+||||||||||||.|+ |.+.|++|++.+++... .....++...|...
T Consensus 7 ls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~Ls-Gel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~ 85 (259)
T COG4559 7 LSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALS-GELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSS 85 (259)
T ss_pred eEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhh-CccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcc
Confidence 34445677888888886 9999999999999999999999 99999999999985441 11234566666655
Q ss_pred cccCCccccceeecCCCCCCC-HH--hHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 256 DILGFDSVGNVVNKPEHGSLD-WV--KICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 256 ~~~~~~~~~~~v~~~~~~~~~-~~--~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.-+.| ++.+++..+...... .. +..+..+++ +...++..+..+....|||+..
T Consensus 86 laFpF-tv~eVV~mGr~p~~~g~~~~e~~~i~~~a---la~~d~~~la~R~y~~LSGGEq 141 (259)
T COG4559 86 LAFPF-TVQEVVQMGRIPHRSGREPEEDERIAAQA---LAATDLSGLAGRDYRTLSGGEQ 141 (259)
T ss_pred cccce-EHHHHHHhcccccccCCCchhhHHHHHHH---HHHcChhhhhccchhhcCchHH
Confidence 44444 345566555442211 11 222223444 4455557777788899999753
No 48
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.57 E-value=1.4e-15 Score=141.22 Aligned_cols=128 Identities=16% Similarity=0.062 Sum_probs=81.9
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-----hhhh
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-----HEME 246 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-----~~~~ 246 (320)
.++++++++.| +...++++++|. |++++|+||||||||||+++|+ |+++|++|++++++.+.. ....
T Consensus 7 ~i~i~~l~k~~----~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~-Gl~~p~~G~v~i~G~~~~~~~~~~~~~ 81 (306)
T PRK13537 7 PIDFRNVEKRY----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLL-GLTHPDAGSISLCGEPVPSRARHARQR 81 (306)
T ss_pred eEEEEeEEEEE----CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEECCEecccchHHHHhc
Confidence 45666554444 445678888876 9999999999999999999999 999999999999865421 1123
Q ss_pred cCcceeeeccccCCccccceeec-CCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 247 SGRTSSVGNDILGFDSVGNVVNK-PEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 247 ~g~v~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
+|+++|.+..+.. .++.+++.+ .........+..+ ++.++++.+++.+..++.+.+|||++
T Consensus 82 ig~v~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~LS~G~ 143 (306)
T PRK13537 82 VGVVPQFDNLDPD-FTVRENLLVFGRYFGLSAAAARA---LVPPLLEFAKLENKADAKVGELSGGM 143 (306)
T ss_pred EEEEeccCcCCCC-CcHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHcCCchHhcCchhhCCHHH
Confidence 4444444332211 244444432 2111222222222 33455556677888899999999964
No 49
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.57 E-value=1.6e-15 Score=143.63 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=85.4
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCC--ceeeeccccchh-hhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGR--GHARQKLFRHKH-EMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~--G~i~~~~~~~~~-~~~~g 248 (320)
.++++++++.| +...+++++++. |++++|+|||||||||||++|+ |+++|++ |+|.+++.+... .....
T Consensus 5 ~l~~~~l~~~~----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~ia-Gl~~p~~~~G~i~~~g~~~~~~~~~~r 79 (362)
T TIGR03258 5 GIRIDHLRVAY----GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIA-GFVKAAGLTGRIAIADRDLTHAPPHKR 79 (362)
T ss_pred EEEEEEEEEEE----CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCCEEEEECCEECCCCCHHHC
Confidence 45556554444 334567777765 9999999999999999999999 9999999 999988654211 11122
Q ss_pred cceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 249 RTSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 249 ~v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.++.++|+...| .++.+++.++.. ......+. ..++.++++.+|+.++.+++|.+|||++.
T Consensus 80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~---~~~v~~~l~~~gL~~~~~~~~~~LSgGq~ 143 (362)
T TIGR03258 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADI---AERVADALKLVGLGDAAAHLPAQLSGGMQ 143 (362)
T ss_pred CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHH---HHHHHHHHHhcCCCchhhCChhhCCHHHH
Confidence 344445544333 355666655432 22233232 23455666677778889999999999653
No 50
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.57 E-value=2.3e-15 Score=131.72 Aligned_cols=114 Identities=18% Similarity=0.119 Sum_probs=73.9
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccc---cCCccccc
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDI---LGFDSVGN 265 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~---~~~~~~~~ 265 (320)
..++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++...........++.++|+. +...+..+
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e 91 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILA-GLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVRE 91 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHH
Confidence 4567777765 9999999999999999999999 999999999998764421111122344444442 11124444
Q ss_pred eeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 266 VVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 266 ~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
++....... . . ...++.++++.+|+.++.++.+..|||++.
T Consensus 92 ~l~~~~~~~-~--~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 132 (205)
T cd03226 92 ELLLGLKEL-D--A---GNEQAETVLKDLDLYALKERHPLSLSGGQK 132 (205)
T ss_pred HHhhhhhhc-C--c---cHHHHHHHHHHcCCchhcCCCchhCCHHHH
Confidence 443321111 1 0 112344566667778888999999999653
No 51
>KOG0463|consensus
Probab=99.57 E-value=4.2e-15 Score=136.35 Aligned_cols=99 Identities=58% Similarity=0.900 Sum_probs=88.9
Q ss_pred cccccccCCCCCceEEEeCCCcchhh-----ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCC
Q psy15138 3 SIVDQTPCTAENAASVFETRIHERDD-----DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKID 77 (320)
Q Consensus 3 ~~~~~~~~~~~~~~~~~d~pgh~~~~-----~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~D 77 (320)
.|+-|-.- +-..|+|||..|||+|. .++ .-.||+.|| .|+|+.|+.++|+|||.||.+|.+|+++|+||+|
T Consensus 209 dWvkIce~-saKviTFIDLAGHEkYLKTTvFGMT-GH~PDf~ML--MiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKID 284 (641)
T KOG0463|consen 209 DWVKICED-SAKVITFIDLAGHEKYLKTTVFGMT-GHMPDFTML--MIGANAGIIGMTKEHLGLALALHVPVFVVVTKID 284 (641)
T ss_pred cceeeccc-cceeEEEEeccchhhhhheeeeccc-cCCCCceEE--EecccccceeccHHhhhhhhhhcCcEEEEEEeec
Confidence 47777444 34569999999999999 444 567999999 9999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHhhcCCCccccCc
Q psy15138 78 MCPPNVLQDTLKLLVRILKSPGCRKVPV 105 (320)
Q Consensus 78 l~~~~~le~~l~~~~~~l~~~~~~~i~~ 105 (320)
+++..-|++.++-+.+.+++++|.++|.
T Consensus 285 MCPANiLqEtmKll~rllkS~gcrK~Pv 312 (641)
T KOG0463|consen 285 MCPANILQETMKLLTRLLKSPGCRKLPV 312 (641)
T ss_pred cCcHHHHHHHHHHHHHHhcCCCcccCcE
Confidence 9999999999999999999999998854
No 52
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.56 E-value=8.6e-16 Score=130.24 Aligned_cols=128 Identities=14% Similarity=0.100 Sum_probs=83.2
Q ss_pred eeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCcceeeecccc-
Q psy15138 186 TGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGRTSSVGNDIL- 258 (320)
Q Consensus 186 ~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~v~~~~~~~~- 258 (320)
++.|+...++++++.. |..++|+|||||||||||.+++ ++++.++|++.+++.+.. .......++-.-|+..
T Consensus 8 ~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~s-RL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i 86 (252)
T COG4604 8 SKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS-RLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHI 86 (252)
T ss_pred hHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHH-HhccccCceEEEeeeecccCChHHHHHHHHHHHhhchh
Confidence 3445667777877765 9999999999999999999999 999999999999865411 1111111122222211
Q ss_pred -CCccccceeecCCCCCC---CHHhHHHHHHHHHHHhcccCCccccccccccccCCCCCEEEE
Q psy15138 259 -GFDSVGNVVNKPEHGSL---DWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGML 317 (320)
Q Consensus 259 -~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~~~~l 317 (320)
.-.++.+.+.++.+... ...+......+.++++++ .+..++++.+|||++...+.+
T Consensus 87 ~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L---~~l~dryLd~LSGGQrQRAfI 146 (252)
T COG4604 87 NSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHL---EDLSDRYLDELSGGQRQRAFI 146 (252)
T ss_pred hheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcc---cchHHHhHHhcccchhhhhhh
Confidence 11356677777655322 222333344555555555 777889999999988766644
No 53
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=2.6e-15 Score=134.21 Aligned_cols=121 Identities=19% Similarity=0.102 Sum_probs=76.7
Q ss_pred eecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh------hhhcCcceeeecccc
Q psy15138 188 QYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH------EMESGRTSSVGNDIL 258 (320)
Q Consensus 188 ~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~------~~~~g~v~~~~~~~~ 258 (320)
.|+...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+... ......++.++|...
T Consensus 9 ~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~-G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~ 87 (235)
T cd03261 9 SFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIV-GLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGA 87 (235)
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcc
Confidence 34344567777775 9999999999999999999999 9999999999987543110 111223444444432
Q ss_pred CC--ccccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 259 GF--DSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 259 ~~--~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.+ .++.+++..... ........ ..++.++++.+|+.+..++.+.+|||++.
T Consensus 88 ~~~~~tv~~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 142 (235)
T cd03261 88 LFDSLTVFENVAFPLREHTRLSEEEI---REIVLEKLEAVGLRGAEDLYPAELSGGMK 142 (235)
T ss_pred cCCCCcHHHHHHHHHhhccCCCHHHH---HHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence 22 244444433211 11222222 23344556666777788999999999654
No 54
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.56 E-value=3.4e-15 Score=128.15 Aligned_cols=129 Identities=18% Similarity=0.062 Sum_probs=86.9
Q ss_pred CeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCC-----ceeeeccccch-----hhhhcCcc
Q psy15138 184 GLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGR-----GHARQKLFRHK-----HEMESGRT 250 (320)
Q Consensus 184 ~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~-----G~i~~~~~~~~-----~~~~~g~v 250 (320)
++...|+..++++++++. +.++|++||||||||||||+++ .+.+... |+|.+++.+.. ....+.++
T Consensus 12 ~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lN-Rmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~v 90 (253)
T COG1117 12 DLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLN-RMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRV 90 (253)
T ss_pred ceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHH-hhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHh
Confidence 445556777888888775 9999999999999999999999 8887765 88888755411 11123455
Q ss_pred eeeeccccCC-ccccceeecCCC-CCCCHHhHHHHHHHHHHHhccc-CCccccccccccccCCCCC
Q psy15138 251 SSVGNDILGF-DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVPD 313 (320)
Q Consensus 251 ~~~~~~~~~~-~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~~ 313 (320)
+.+||.+..| .+..+++.++.. .........+.+++.++...+- ..++++++.+.+|||++..
T Consensus 91 GMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQ 156 (253)
T COG1117 91 GMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQ 156 (253)
T ss_pred eeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHH
Confidence 5666665555 466777777654 2222234444455555444332 2367899999999997754
No 55
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.56 E-value=1.9e-15 Score=144.68 Aligned_cols=131 Identities=18% Similarity=0.142 Sum_probs=83.4
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---h---hh
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---H---EM 245 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~---~~ 245 (320)
+++++++++. |+...++++++|. |++++|+||||||||||+|+|+ |+++|.+|+|.+++.+.. . ..
T Consensus 3 ~L~~~nls~~----y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~La-Gll~p~sG~I~l~G~~i~~~~~~~~~~ 77 (402)
T PRK09536 3 MIDVSDLSVE----FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAIN-GTLTPTAGTVLVAGDDVEALSARAASR 77 (402)
T ss_pred eEEEeeEEEE----ECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHh-cCCCCCCcEEEECCEEcCcCCHHHHhc
Confidence 3556655444 4445677777775 9999999999999999999999 999999999999865421 1 11
Q ss_pred hcCcceeeeccccCCccccceeecCCCC---CCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 246 ESGRTSSVGNDILGFDSVGNVVNKPEHG---SLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 246 ~~g~v~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.+++++|....++. .++.+++..+... ...... .+..+++.++++.+|+.++.++++.+|||++.
T Consensus 78 ~ig~v~q~~~l~~~-~tv~e~v~~~~~~~~~~~~~~~-~~~~~~v~~~le~vgl~~~~~~~~~~LSgGer 145 (402)
T PRK09536 78 RVASVPQDTSLSFE-FDVRQVVEMGRTPHRSRFDTWT-ETDRAAVERAMERTGVAQFADRPVTSLSGGER 145 (402)
T ss_pred ceEEEccCCCCCCC-CCHHHHHHhccchhcccccCCC-HHHHHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence 23444443332222 2444455443221 111001 11223455666677778888999999999654
No 56
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.56 E-value=3.1e-15 Score=141.37 Aligned_cols=120 Identities=16% Similarity=0.115 Sum_probs=80.1
Q ss_pred ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcceeeeccccCC--cc
Q psy15138 189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTSSVGNDILGF--DS 262 (320)
Q Consensus 189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~~~--~~ 262 (320)
|+...+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+... ......++.++|+...| .+
T Consensus 12 ~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~Ia-Gl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~t 90 (353)
T PRK10851 12 FGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIA-GLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMT 90 (353)
T ss_pred eCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCc
Confidence 3334567777775 9999999999999999999999 9999999999997654211 11122344555554333 35
Q ss_pred ccceeecCCCC-----CCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 263 VGNVVNKPEHG-----SLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 263 ~~~~v~~~~~~-----~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
+.+++.++... .....+ ..+++.++++.+++.++.+++|.+|||++.
T Consensus 91 v~eni~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~ 142 (353)
T PRK10851 91 VFDNIAFGLTVLPRRERPNAAA---IKAKVTQLLEMVQLAHLADRYPAQLSGGQK 142 (353)
T ss_pred HHHHHHhhhhhcccccCCCHHH---HHHHHHHHHHHcCCchhhhCChhhCCHHHH
Confidence 55666554321 112222 233455666677778889999999999653
No 57
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.56 E-value=3.7e-14 Score=128.67 Aligned_cols=177 Identities=20% Similarity=0.260 Sum_probs=116.7
Q ss_pred CCCccchhhhccceecCCCCch--hHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHHHHhhcCCCccccCccccc
Q psy15138 32 EASPADHSMLQSKVGANAGIVG--MTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNCL 109 (320)
Q Consensus 32 ~~~~~d~~~l~~vv~a~~g~~~--~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~~~~l~~~~~~~i~~kl~~ 109 (320)
.+++.|.+++ |+++.+|... +..++|.+|.+.+|.++|+|||+||.+.+..+. +++... +..+.|.+..
T Consensus 76 ~v~n~d~~ii--Ivs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~--~~~~~~-----y~~~gy~v~~ 146 (301)
T COG1162 76 PVANNDQAII--VVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAV--KELLRE-----YEDIGYPVLF 146 (301)
T ss_pred cccccceEEE--EEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHH--HHHHHH-----HHhCCeeEEE
Confidence 3788999988 9999887764 666799999999999999999999998766653 333333 2234444333
Q ss_pred cC-CchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeeee
Q psy15138 110 IS-PTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQ 188 (320)
Q Consensus 110 ~~-gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (320)
.+ .|.+.+++++..
T Consensus 147 ~s~~~~~~~~~l~~~----------------------------------------------------------------- 161 (301)
T COG1162 147 VSAKNGDGLEELAEL----------------------------------------------------------------- 161 (301)
T ss_pred ecCcCcccHHHHHHH-----------------------------------------------------------------
Confidence 33 444444433222
Q ss_pred ecceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCCccccceee
Q psy15138 189 YLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVN 268 (320)
Q Consensus 189 ~~~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~v~ 268 (320)
+.|.+.+++|+||.|||||+|.|. +......|+|+-... +|+.......++.|+..+.++.
T Consensus 162 -----------l~~~~svl~GqSGVGKSSLiN~L~-p~~~~~t~eIS~~~~-------rGkHTTt~~~l~~l~~gG~iiD 222 (301)
T COG1162 162 -----------LAGKITVLLGQSGVGKSTLINALL-PELNQKTGEISEKLG-------RGRHTTTHVELFPLPGGGWIID 222 (301)
T ss_pred -----------hcCCeEEEECCCCCcHHHHHHhhC-chhhhhhhhhcccCC-------CCCCccceEEEEEcCCCCEEEe
Confidence 124457999999999999999999 887777888876543 4555666666666777788888
Q ss_pred cCCCCCCCH--HhHHHHHHHHHHHhcccCCccccc
Q psy15138 269 KPEHGSLDW--VKICERSAKVITFIDLAGHERYLK 301 (320)
Q Consensus 269 ~~~~~~~~~--~~~~~~~~~~l~~l~l~gl~~~~~ 301 (320)
.+....+.. ....+......++-++.+.+++++
T Consensus 223 TPGf~~~~l~~~~~e~l~~~F~ef~~~~~~CkFr~ 257 (301)
T COG1162 223 TPGFRSLGLAHLEPEDLVQAFPEFAELARQCKFRD 257 (301)
T ss_pred CCCCCccCcccCCHHHHHHHhHHHHHHhcCCCCCC
Confidence 877654433 222223333444445555455443
No 58
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.56 E-value=1.4e-15 Score=143.85 Aligned_cols=118 Identities=18% Similarity=0.147 Sum_probs=80.8
Q ss_pred ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---h-h---hhcCcceeeeccccCC
Q psy15138 191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---H-E---MESGRTSSVGNDILGF 260 (320)
Q Consensus 191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~-~---~~~g~v~~~~~~~~~~ 260 (320)
...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. . . .+...+++++|....|
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~-Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLN-RLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHh-CCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 34466666665 9999999999999999999999 999999999999865421 1 0 1133455556654444
Q ss_pred --ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 261 --DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 261 --~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.++.+++.+... ...... +..+++.++++.+|+..+.+++|.+|||++.
T Consensus 84 ~~~TV~eNi~~~~~~~~~~~~---~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~ 135 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGWPEQ---ERKEKALELLKLVGLEEYEHRYPDELSGGMQ 135 (363)
T ss_pred CCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHHHhcCCchhhhCChhhCCHHHH
Confidence 355555554321 122222 2334556667778888899999999999764
No 59
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.56 E-value=2.5e-15 Score=138.66 Aligned_cols=123 Identities=19% Similarity=0.164 Sum_probs=82.2
Q ss_pred Ceeeeec-ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-----hhhcCcceeee
Q psy15138 184 GLTGQYL-LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-----EMESGRTSSVG 254 (320)
Q Consensus 184 ~~~~~~~-~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-----~~~~g~v~~~~ 254 (320)
++++.|+ ...++++++|. |+.+||+||||||||||+|+|+ |++.|++|+|.+.+.+... ...+|++++.+
T Consensus 9 ~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~-gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~ 87 (293)
T COG1131 9 NLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILA-GLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEP 87 (293)
T ss_pred ceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHh-CCcCCCceEEEEcCEeCccCHHHHHhheEEEccCC
Confidence 5566777 58889999886 9999999999999999999999 9999999999998654221 12345555544
Q ss_pred ccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 255 NDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 255 ~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
.. +...++.+++.+... ......... +++.++++.+|+.+..++.+.+||+++
T Consensus 88 ~~-~~~lT~~e~l~~~~~l~~~~~~~~~---~~~~~~l~~~~L~~~~~~~~~~lS~G~ 141 (293)
T COG1131 88 SL-YPELTVRENLEFFARLYGLSKEEAE---ERIEELLELFGLEDKANKKVRTLSGGM 141 (293)
T ss_pred CC-CccccHHHHHHHHHHHhCCChhHHH---HHHHHHHHHcCCchhhCcchhhcCHHH
Confidence 42 223345555544222 121112222 334445555666666688899999964
No 60
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=2.6e-15 Score=132.82 Aligned_cols=121 Identities=17% Similarity=0.077 Sum_probs=76.0
Q ss_pred eecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch--hhhhcCcceeeeccccCC--
Q psy15138 188 QYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK--HEMESGRTSSVGNDILGF-- 260 (320)
Q Consensus 188 ~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~--~~~~~g~v~~~~~~~~~~-- 260 (320)
.|+...+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.... .......++.++|+...+
T Consensus 9 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~-G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 87 (220)
T cd03265 9 KYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLT-TLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDE 87 (220)
T ss_pred EECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEecCcChHHHhhcEEEecCCcccccc
Confidence 33344567777775 9999999999999999999999 999999999998754321 011112344444443222
Q ss_pred ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 261 DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 261 ~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.++.+++..... ....... ...++.++++.+|+.+..++++..|||++.
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 137 (220)
T cd03265 88 LTGWENLYIHARLYGVPGAE---RRERIDELLDFVGLLEAADRLVKTYSGGMR 137 (220)
T ss_pred CcHHHHHHHHHHHcCCCHHH---HHHHHHHHHHHcCCHHHhhCChhhCCHHHH
Confidence 233333332111 1111221 223445566667778888999999999654
No 61
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.55 E-value=1.6e-14 Score=128.31 Aligned_cols=100 Identities=56% Similarity=0.786 Sum_probs=84.4
Q ss_pred ccccccCCC-CCceEEEeCCCcchhh--ccCCCC--ccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCC
Q psy15138 4 IVDQTPCTA-ENAASVFETRIHERDD--DLPEAS--PADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDM 78 (320)
Q Consensus 4 ~~~~~~~~~-~~~~~~~d~pgh~~~~--~~~~~~--~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl 78 (320)
|.|.+.|.. ...+.++|+|||++|. |+.|.. .+|++++ ||+++.|+.+++++|+.++..+++|.++++||+|+
T Consensus 73 ~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~ll--Vvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~ 150 (224)
T cd04165 73 ESDIEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAML--VVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDL 150 (224)
T ss_pred cccceeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEE--EEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 444555522 2458999999999998 776654 7999988 99999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhhcCCCccccCc
Q psy15138 79 CPPNVLQDTLKLLVRILKSPGCRKVPV 105 (320)
Q Consensus 79 ~~~~~le~~l~~~~~~l~~~~~~~i~~ 105 (320)
.+...++..++++.+.|+..+|...|+
T Consensus 151 ~~~~~~~~~~~~l~~~L~~~g~~~~p~ 177 (224)
T cd04165 151 APANILQETLKDLKRILKVPGVRKLPV 177 (224)
T ss_pred cCHHHHHHHHHHHHHHhcCCCccccce
Confidence 998899999999999988777765543
No 62
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=2.8e-15 Score=142.80 Aligned_cols=130 Identities=18% Similarity=0.143 Sum_probs=86.4
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-hhhhcCcc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-HEMESGRT 250 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-~~~~~g~v 250 (320)
.++++++.+.| +...+++++++. |++++|+|||||||||||++|+ |+++|++|+|.+++.... .......+
T Consensus 19 ~l~l~~v~~~~----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~Ia-Gl~~p~~G~I~i~g~~i~~~~~~~r~i 93 (377)
T PRK11607 19 LLEIRNLTKSF----DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLA-GFEQPTAGQIMLDGVDLSHVPPYQRPI 93 (377)
T ss_pred eEEEEeEEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh-CCCCCCceEEEECCEECCCCCHHHCCE
Confidence 46666655544 233456666665 9999999999999999999999 999999999999865421 01112334
Q ss_pred eeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 251 SSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 251 ~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
+.++|+...| .++.+++.++.. ......+ ..+++.++++.+++.++.+++|.+|||++.
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~---~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~ 155 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAE---IASRVNEMLGLVHMQEFAKRKPHQLSGGQR 155 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHH---HHHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence 4555554333 356666665432 2222222 234455666677778889999999999653
No 63
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.55 E-value=3e-15 Score=142.42 Aligned_cols=129 Identities=16% Similarity=0.050 Sum_probs=83.6
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcce
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTS 251 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~ 251 (320)
++++++++.| +...+++++++. |++++|+|||||||||||++|+ |+++|++|+|.+++.+... ......++
T Consensus 4 l~i~~l~~~~----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~ia-Gl~~p~~G~I~~~g~~i~~~~~~~~~i~ 78 (369)
T PRK11000 4 VTLRNVTKAY----GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIA-GLEDITSGDLFIGEKRMNDVPPAERGVG 78 (369)
T ss_pred EEEEEEEEEe----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh-CCCCCCceEEEECCEECCCCCHhHCCEE
Confidence 4555554443 334567777765 9999999999999999999999 9999999999987643211 01112345
Q ss_pred eeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 252 SVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 252 ~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.++|+...| .++.+++.++.. ......+ ...++.++++.+|+.++.++++.+|||++.
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~---~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~ 139 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEE---INQRVNQVAEVLQLAHLLDRKPKALSGGQR 139 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHH---HHHHHHHHHHHcCChhhhcCChhhCCHHHH
Confidence 555554333 245555554322 1222222 223455666677778889999999999653
No 64
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.55 E-value=1.6e-15 Score=126.91 Aligned_cols=124 Identities=15% Similarity=0.121 Sum_probs=86.8
Q ss_pred eeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc-------------------hh
Q psy15138 186 TGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH-------------------KH 243 (320)
Q Consensus 186 ~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~-------------------~~ 243 (320)
-+.|+...+++.+++. |+.+.|+|.|||||||+||||+ -+..|+.|.|++++... ..
T Consensus 13 HK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN-~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~ 91 (256)
T COG4598 13 HKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN-FLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRL 91 (256)
T ss_pred HhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHH-hhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHH
Confidence 3456677788888886 9999999999999999999999 99999999998874320 11
Q ss_pred hhhcCcceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCCC
Q psy15138 244 EMESGRTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPD 313 (320)
Q Consensus 244 ~~~~g~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~ 313 (320)
+.+.|+++|.|..+..++...+++..+.. ...++. +..+++..+++.+|+.++.+.+|..|||++..
T Consensus 92 Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~---ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQ 159 (256)
T COG4598 92 RTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKA---EAIERAEKYLAKVGIAEKADAYPAHLSGGQQQ 159 (256)
T ss_pred HHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHH---HHHHHHHHHHHHhCchhhhhcCccccCchHHH
Confidence 22345666655433223333444444332 233333 34556667788899999999999999997654
No 65
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.55 E-value=4.1e-15 Score=131.30 Aligned_cols=117 Identities=18% Similarity=0.134 Sum_probs=74.6
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-------hhhcCcceeeeccccCC-
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-------EMESGRTSSVGNDILGF- 260 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-------~~~~g~v~~~~~~~~~~- 260 (320)
..++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+... ......++.++|....|
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILG-GLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLP 95 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHh-CCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCC
Confidence 4567777765 9999999999999999999999 9999999999987543210 00112344444443222
Q ss_pred -ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 261 -DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 261 -~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.++.+++..... ....... ..+++.++++.+|+.+..++.+..|||++.
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 146 (218)
T cd03255 96 DLTALENVELPLLLAGVPKKE---RRERAEELLERVGLGDRLNHYPSELSGGQQ 146 (218)
T ss_pred CCcHHHHHHHHHhhcCCCHHH---HHHHHHHHHHHcCCchhhhcChhhcCHHHH
Confidence 244444433211 1111111 223445566667778888999999999653
No 66
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.55 E-value=3e-15 Score=130.15 Aligned_cols=124 Identities=16% Similarity=0.048 Sum_probs=83.4
Q ss_pred eeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc----chhhhhcCcceeeeccc
Q psy15138 185 LTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR----HKHEMESGRTSSVGNDI 257 (320)
Q Consensus 185 ~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~----~~~~~~~g~v~~~~~~~ 257 (320)
+...|+..+++.++++. |++++|+|+||+|||||||.|+ |+.++.+|+|.+.+.+ ..|+....-+.+++|..
T Consensus 9 l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~-Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR 87 (237)
T COG0410 9 LSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIM-GLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGR 87 (237)
T ss_pred EeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccc
Confidence 34456667888888886 9999999999999999999999 9999999999998665 23333333344554433
Q ss_pred --cCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 258 --LGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 258 --~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
+.-.++.+|+..+..............+++.+++- -+.+++++....|||++
T Consensus 88 ~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP--~Lker~~~~aG~LSGGE 141 (237)
T COG0410 88 RIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFP--RLKERRNQRAGTLSGGE 141 (237)
T ss_pred cchhhCcHHHHHhhhhhcccccccccccHHHHHHHCh--hHHHHhcCcccCCChHH
Confidence 33346667666554322211111111344444433 25788999999999964
No 67
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=2.2e-15 Score=142.12 Aligned_cols=133 Identities=14% Similarity=0.081 Sum_probs=82.3
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hh--hh
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HE--ME 246 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~--~~ 246 (320)
++++++++.|........++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. .. ..
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~-Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCIN-LLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHh-CCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 34555544442100124567777775 9999999999999999999999 999999999998864321 10 11
Q ss_pred cCcceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 247 SGRTSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 247 ~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
...++.++|+...+ .++.+++..+.. ....... ..+++.++++.+|+.++.++++.+|||++.
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~---~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~ 146 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAE---IKARVTELLELVGLSDKADRYPAQLSGGQK 146 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHH---HHHHHHHHHHHcCCchhhhCChhhCCHHHH
Confidence 22344445443322 244455443221 1122222 223455566677778888999999999653
No 68
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.55 E-value=1.8e-14 Score=142.94 Aligned_cols=228 Identities=14% Similarity=0.125 Sum_probs=127.7
Q ss_pred chhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHh---hc--C-------CCcccc----Ccccccc
Q psy15138 52 VGMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRI---LK--S-------PGCRKV----PVMNCLI 110 (320)
Q Consensus 52 ~~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~---l~--~-------~~~~~i----~~kl~~~ 110 (320)
.+..+.++.||+++-. |.++++ +.+|..+..++.+.+.++.+. +. + ..|+++ .+++ .+
T Consensus 147 SgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i-~~ 225 (510)
T PRK09700 147 SISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSS-VC 225 (510)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE-ee
Confidence 3567789999999999 788888 999999999999888887542 11 1 223333 2333 34
Q ss_pred CCchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeeeeec
Q psy15138 111 SPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQYL 190 (320)
Q Consensus 111 ~gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (320)
.|+++.+.. .+..++.. +... ........ .. .........++++++++.+
T Consensus 226 ~g~~~~~~~--~~~~~~~~---~~~~-------~~~~~~~~-----------~~--~~~~~~~~~l~~~~l~~~~----- 275 (510)
T PRK09700 226 SGMVSDVSN--DDIVRLMV---GREL-------QNRFNAMK-----------EN--VSNLAHETVFEVRNVTSRD----- 275 (510)
T ss_pred ecchhhCCH--HHHHHHhc---CCCc-------cccccccc-----------cc--cccCCCCcEEEEeCccccC-----
Confidence 455554321 11111110 0000 00000000 00 0000112357777777543
Q ss_pred ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---h----hhhcCcceeeec--ccc
Q psy15138 191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---H----EMESGRTSSVGN--DIL 258 (320)
Q Consensus 191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~----~~~~g~v~~~~~--~~~ 258 (320)
..++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. . ...+++++|.++ ..+
T Consensus 276 -~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~-Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (510)
T PRK09700 276 -RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLF-GVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFF 353 (510)
T ss_pred -CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCc
Confidence 1257777765 9999999999999999999999 999999999998754311 0 112344444321 111
Q ss_pred CCccccceeecCCCC---CC----CHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138 259 GFDSVGNVVNKPEHG---SL----DWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP 312 (320)
Q Consensus 259 ~~~~~~~~v~~~~~~---~~----~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~ 312 (320)
...++.+++...... .. ......+...++.++++.+|+. +..++++..|||++.
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 415 (510)
T PRK09700 354 PNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQ 415 (510)
T ss_pred CCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHH
Confidence 112344444332110 00 0000111123345566667776 678999999999754
No 69
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.55 E-value=3.1e-15 Score=131.17 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=80.3
Q ss_pred cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCCc---cc
Q psy15138 190 LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFD---SV 263 (320)
Q Consensus 190 ~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~---~~ 263 (320)
....+|++++|. |++++|+|+||||||||+|+|+ |.++|++|++...+ .++.....-.+|. +.
T Consensus 38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlklia-Gi~~Pt~G~v~v~G----------~v~~li~lg~Gf~pelTG 106 (249)
T COG1134 38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIA-GIYKPTSGKVKVTG----------KVAPLIELGAGFDPELTG 106 (249)
T ss_pred ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHh-CccCCCCceEEEcc----------eEehhhhcccCCCcccch
Confidence 346678888886 9999999999999999999999 99999999999853 3333332223332 23
Q ss_pred ccee-ecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCC
Q psy15138 264 GNVV-NKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGH 310 (320)
Q Consensus 264 ~~~v-~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~ 310 (320)
.+++ ..+....+...++.++.++++++-++ .++.++++..+|.+
T Consensus 107 reNi~l~~~~~G~~~~ei~~~~~eIieFaEL---G~fi~~PvktYSSG 151 (249)
T COG1134 107 RENIYLRGLILGLTRKEIDEKVDEIIEFAEL---GDFIDQPVKTYSSG 151 (249)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHH---HHHhhCchhhccHH
Confidence 3333 44445667778888888888887776 88999999999874
No 70
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=3.5e-15 Score=138.48 Aligned_cols=133 Identities=14% Similarity=0.167 Sum_probs=82.3
Q ss_pred eeeeecCCCeeeee-cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc----------
Q psy15138 176 LRQRKLDNGLTGQY-LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---------- 241 (320)
Q Consensus 176 ~~~~~~~~~~~~~~-~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---------- 241 (320)
++++++++.|.... ....+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLN-ALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHh-CCCCCCCcEEEEeceeccccccccccc
Confidence 45565555543211 112467777775 9999999999999999999999 99999999998864321
Q ss_pred -----------------h---hhhhcCcceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCc-cc
Q psy15138 242 -----------------K---HEMESGRTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHE-RY 299 (320)
Q Consensus 242 -----------------~---~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~-~~ 299 (320)
. ....+|+++|.+...+...++.+++.++.. ......+.. +++.++++.+|+. ++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~---~~~~~~l~~~gL~~~~ 158 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAK---KRAAKYIELVGLDESY 158 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHH---HHHHHHHHHcCCChhh
Confidence 0 011245555543222222355555544322 122333333 3445566667775 68
Q ss_pred cccccccccCCCC
Q psy15138 300 LKTTVFGMTGHVP 312 (320)
Q Consensus 300 ~~~~~~~LSG~~~ 312 (320)
.++.+..|||++.
T Consensus 159 ~~~~~~~LSgGqk 171 (305)
T PRK13651 159 LQRSPFELSGGQK 171 (305)
T ss_pred hhCChhhCCHHHH
Confidence 8999999999653
No 71
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=3.3e-15 Score=131.48 Aligned_cols=121 Identities=18% Similarity=0.157 Sum_probs=76.2
Q ss_pred eecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcceeeeccccCC--c
Q psy15138 188 QYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTSSVGNDILGF--D 261 (320)
Q Consensus 188 ~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~~~--~ 261 (320)
.|....++++++|. |++++|+||||||||||+++|+ |+++|.+|+|.+++.+... ......++.++|....+ .
T Consensus 9 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~ 87 (213)
T cd03259 9 TYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIA-GLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHL 87 (213)
T ss_pred EeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCC
Confidence 33335577777775 9999999999999999999999 9999999999987543111 11112344444443222 2
Q ss_pred cccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 262 SVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 262 ~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
+..+++..... ....... ...++.++++.+|+.++.++.+..|||++.
T Consensus 88 tv~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 136 (213)
T cd03259 88 TVAENIAFGLKLRGVPKAE---IRARVRELLELVGLEGLLNRYPHELSGGQQ 136 (213)
T ss_pred cHHHHHHhHHHHcCCCHHH---HHHHHHHHHHHcCChhhhhcChhhCCHHHH
Confidence 33444432211 1111111 223445566667778888999999999653
No 72
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=3.4e-15 Score=133.35 Aligned_cols=134 Identities=16% Similarity=0.110 Sum_probs=82.1
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hh---
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HE--- 244 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~--- 244 (320)
+++++++.+.|........++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. ..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLG-GLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 456666655543211113466666665 9999999999999999999999 999999999998764311 00
Q ss_pred hhcCcceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 245 MESGRTSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 245 ~~~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.....++.++|+...+ .+..+++..... ....... ..+++.++++.+|+.+..++.+.+|||++.
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~ 151 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAE---INSRALEMLAAVGLEHRANHRPSELSGGER 151 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCCchhhhCChhhCCHHHH
Confidence 1112344455543222 244444433211 1112222 223445566667778888899999999653
No 73
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.54 E-value=3.9e-15 Score=140.01 Aligned_cols=130 Identities=15% Similarity=0.059 Sum_probs=83.4
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch--hhhhcCc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK--HEMESGR 249 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~--~~~~~g~ 249 (320)
+++++++++.| +...++++++|. |++++|+||||||||||+++|+ |+++|++|++.+++.+.. .......
T Consensus 41 ~i~i~nl~k~y----~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~-Gl~~p~~G~i~i~G~~~~~~~~~~~~~ 115 (340)
T PRK13536 41 AIDLAGVSKSY----GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMIL-GMTSPDAGKITVLGVPVPARARLARAR 115 (340)
T ss_pred eEEEEEEEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHH-cCCCCCceEEEECCEECCcchHHHhcc
Confidence 56777665544 445678888776 9999999999999999999999 999999999999865421 1111233
Q ss_pred ceeeeccccCC--ccccceeec-CCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 250 TSSVGNDILGF--DSVGNVVNK-PEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 250 v~~~~~~~~~~--~~~~~~v~~-~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
++.++|+...+ .++.+++.. ............ .++.++++.+++.+..++.+.+|||++.
T Consensus 116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~---~~~~~ll~~~~L~~~~~~~~~~LS~G~k 178 (340)
T PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIE---AVIPSLLEFARLESKADARVSDLSGGMK 178 (340)
T ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHcCCchhhCCChhhCCHHHH
Confidence 44444443222 234444432 211112222222 2334555667778888999999999643
No 74
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.54 E-value=4.4e-15 Score=130.69 Aligned_cols=121 Identities=24% Similarity=0.137 Sum_probs=76.3
Q ss_pred eecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-hhhhcCcceeeeccccCC-cc
Q psy15138 188 QYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-HEMESGRTSSVGNDILGF-DS 262 (320)
Q Consensus 188 ~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-~~~~~g~v~~~~~~~~~~-~~ 262 (320)
.|+...+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. ....+++++|.+.....+ .+
T Consensus 8 ~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~-G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 8 SYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAIL-GLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHc-CCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCc
Confidence 34334567777775 9999999999999999999999 999999999998764321 112244444443211111 24
Q ss_pred ccceeecCCCCC-----CCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 263 VGNVVNKPEHGS-----LDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 263 ~~~~v~~~~~~~-----~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
+.+++....... ..... ..+++.++++.+|+.+..++++..|||++.
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 138 (213)
T cd03235 87 VRDVVLMGLYGHKGLFRRLSKA---DKAKVDEALERVGLSELADRQIGELSGGQQ 138 (213)
T ss_pred HHHHHHhccccccccccCCCHH---HHHHHHHHHHHcCCHHHHhCCcccCCHHHH
Confidence 444443322111 01111 123445566667778888899999999653
No 75
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.54 E-value=4e-15 Score=138.01 Aligned_cols=117 Identities=16% Similarity=0.055 Sum_probs=74.8
Q ss_pred ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-----hhhcCcceeeeccccCCcc
Q psy15138 191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-----EMESGRTSSVGNDILGFDS 262 (320)
Q Consensus 191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-----~~~~g~v~~~~~~~~~~~~ 262 (320)
...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+... ...+|+++|.+..+.. .+
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~-~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLT-TLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED-LT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC-Cc
Confidence 34567777765 9999999999999999999999 9999999999987643211 1124444443322111 23
Q ss_pred ccceeecCC-CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 263 VGNVVNKPE-HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 263 ~~~~v~~~~-~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
+.+++.... .......... +++.++++.+|+.+..++.+..|||++.
T Consensus 83 v~e~l~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 130 (302)
T TIGR01188 83 GRENLEMMGRLYGLPKDEAE---ERAEELLELFELGEAADRPVGTYSGGMR 130 (302)
T ss_pred HHHHHHHHHHHcCCCHHHHH---HHHHHHHHHcCChhHhCCchhhCCHHHH
Confidence 444443211 1112222222 3344566667778888999999999653
No 76
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=4.2e-15 Score=136.88 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=82.1
Q ss_pred eeeeecCCCeeeeec-ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--------
Q psy15138 176 LRQRKLDNGLTGQYL-LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-------- 243 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~-~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-------- 243 (320)
++++++++.|..... ...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLN-GLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh-cCCCCCccEEEECCEECCCcCccHHHH
Confidence 455555555432111 13467777765 9999999999999999999999 9999999999987644211
Q ss_pred hhhcCcceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCc--cccccccccccCCCC
Q psy15138 244 EMESGRTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHE--RYLKTTVFGMTGHVP 312 (320)
Q Consensus 244 ~~~~g~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~--~~~~~~~~~LSG~~~ 312 (320)
...+|+++|.+...+...++.+++.+... ......+.. +++.++++.+|+. ++.++.+..|||++.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~---~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~ 150 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIE---NRVKRAMNIVGLDYEDYKDKSPFELSGGQK 150 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHH---HHHHHHHHHcCCCchhhccCCcccCCHHHH
Confidence 12345555543222212345555543221 122332222 3344556666775 578899999999653
No 77
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.54 E-value=4.7e-15 Score=130.78 Aligned_cols=116 Identities=21% Similarity=0.168 Sum_probs=74.0
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hh--hhcCcceeeeccccCC--c
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HE--MESGRTSSVGNDILGF--D 261 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~--~~~g~v~~~~~~~~~~--~ 261 (320)
.+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. .. .....++.++|+...+ .
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLIL-GIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDR 95 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccc
Confidence 466666665 9999999999999999999999 999999999998764321 00 0112334444443222 2
Q ss_pred cccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 262 SVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 262 ~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
++.+++..+.. ....... ..+++.++++.+|+.++.++.+.+|||++.
T Consensus 96 tv~e~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 144 (216)
T TIGR00960 96 TVYDNVAFPLRIIGVPPRD---ANERVSAALEKVGLEGKAHALPMQLSGGEQ 144 (216)
T ss_pred cHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCChhhhhCChhhCCHHHH
Confidence 44444433211 1111111 223455566677778888999999999654
No 78
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=4.3e-14 Score=140.11 Aligned_cols=228 Identities=14% Similarity=0.115 Sum_probs=124.3
Q ss_pred hhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHh---hc--C-------CCcccc----CccccccC
Q psy15138 53 GMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRI---LK--S-------PGCRKV----PVMNCLIS 111 (320)
Q Consensus 53 ~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~---l~--~-------~~~~~i----~~kl~~~~ 111 (320)
+..+.+++||+++-. |.++++ +.+|..+..++.+.+.++.+. +. + ..|+++ .+++ ...
T Consensus 146 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i-~~~ 224 (506)
T PRK13549 146 LGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRH-IGT 224 (506)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEE-eee
Confidence 567789999999998 788888 999999998988888887531 11 0 112222 1121 122
Q ss_pred CchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeeeeecc
Q psy15138 112 PTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQYLL 191 (320)
Q Consensus 112 gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (320)
++.+.+.. .+..+... +... .. .+.. .........++++++++.|... +.
T Consensus 225 ~~~~~~~~--~~~~~~~~---~~~~-------~~---------------~~~~--~~~~~~~~~l~~~~l~~~~~~~-~~ 274 (506)
T PRK13549 225 RPAAGMTE--DDIITMMV---GREL-------TA---------------LYPR--EPHTIGEVILEVRNLTAWDPVN-PH 274 (506)
T ss_pred cccccCCH--HHHHHHhh---CcCc-------cc---------------cccc--cccCCCCceEEEecCccccccc-cc
Confidence 22222110 00000000 0000 00 0000 0000112357788877665311 12
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-CCCceeeeccccch----hhhhcCcceeeeccc-----c
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-NGRGHARQKLFRHK----HEMESGRTSSVGNDI-----L 258 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-~~~G~i~~~~~~~~----~~~~~g~v~~~~~~~-----~ 258 (320)
..++++++|. |++++|+||||||||||+|+|+ |+++ |++|+|.+++.+.. .......++.++|.. +
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~-Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLF-GAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIV 353 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHh-CCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCc
Confidence 3467777775 9999999999999999999999 9998 59999998754311 011112234444442 1
Q ss_pred CCccccceeecCCCCCC---CHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138 259 GFDSVGNVVNKPEHGSL---DWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP 312 (320)
Q Consensus 259 ~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~ 312 (320)
...++.+++..+..... ......+...++.++++.+++. +..++++..|||++.
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 354 PVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHH
Confidence 12244444433211000 0001111223455666677775 578899999999754
No 79
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.54 E-value=5.2e-15 Score=130.95 Aligned_cols=116 Identities=17% Similarity=0.141 Sum_probs=73.8
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hh---hhcCcceeeeccccCC--
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HE---MESGRTSSVGNDILGF-- 260 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~---~~~g~v~~~~~~~~~~-- 260 (320)
.++++++|. |++++|+||||||||||+++|+ |+++|.+|++.+++.+.. .. .+...++.++|....+
T Consensus 19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 97 (221)
T TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLG-GLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPD 97 (221)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCC
Confidence 466666665 9999999999999999999999 999999999998754311 00 0112344445543322
Q ss_pred ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 261 DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 261 ~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.+..+++..... ....... ..+++.++++.+|+.+..++.+..|||++.
T Consensus 98 ~tv~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 147 (221)
T TIGR02211 98 FTALENVAMPLLIGKKSVKE---AKERAYEMLEKVGLEHRINHRPSELSGGER 147 (221)
T ss_pred CcHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCChhhhhCChhhCCHHHH
Confidence 234444433211 1111111 223344566667778888999999999654
No 80
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.53 E-value=4.7e-15 Score=130.45 Aligned_cols=120 Identities=13% Similarity=0.049 Sum_probs=75.9
Q ss_pred ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcceeeeccccCC--cc
Q psy15138 189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTSSVGNDILGF--DS 262 (320)
Q Consensus 189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~~~--~~ 262 (320)
|+...++++++|. |++++|+||||||||||+++|+ |+++|.+|++.+++.+... ......++.++|....+ .+
T Consensus 10 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~-G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (213)
T cd03301 10 FGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIA-GLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMT 88 (213)
T ss_pred ECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCC
Confidence 3334567777765 9999999999999999999999 9999999999987543211 01112344444443222 23
Q ss_pred ccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 263 VGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 263 ~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
..+++..... ....... ..+++.++++.+|+.++.++.+..|||++.
T Consensus 89 v~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 136 (213)
T cd03301 89 VYDNIAFGLKLRKVPKDE---IDERVREVAELLQIEHLLDRKPKQLSGGQR 136 (213)
T ss_pred HHHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCCHHHHhCChhhCCHHHH
Confidence 3444433211 1112222 223445566677778888999999999653
No 81
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.53 E-value=5.5e-15 Score=137.12 Aligned_cols=130 Identities=15% Similarity=0.034 Sum_probs=80.7
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch--hhhhcCc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK--HEMESGR 249 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~--~~~~~g~ 249 (320)
.++++++++.| +...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. .......
T Consensus 4 ~i~~~~l~~~~----~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 78 (303)
T TIGR01288 4 AIDLVGVSKSY----GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLL-GMISPDRGKITVLGEPVPSRARLARVA 78 (303)
T ss_pred EEEEEeEEEEe----CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEECcccHHHHhhc
Confidence 35555554443 345577777776 9999999999999999999999 999999999998754321 1111223
Q ss_pred ceeeeccccCC--ccccceeec-CCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 250 TSSVGNDILGF--DSVGNVVNK-PEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 250 v~~~~~~~~~~--~~~~~~v~~-~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
++.++|+...+ .++.+++.. ............ .++.++++.+++.+..++.+.+|||++.
T Consensus 79 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~---~~~~~ll~~~~l~~~~~~~~~~LSgG~~ 141 (303)
T TIGR01288 79 IGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIE---AVIPSLLEFARLESKADVRVALLSGGMK 141 (303)
T ss_pred EEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHCCChhHhcCchhhCCHHHH
Confidence 44444443222 234444432 111112222222 2334555667778888999999999653
No 82
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.53 E-value=1.2e-14 Score=144.79 Aligned_cols=227 Identities=15% Similarity=0.103 Sum_probs=123.4
Q ss_pred chhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHh----hc--C-------CCcccc----Cccccc
Q psy15138 52 VGMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRI----LK--S-------PGCRKV----PVMNCL 109 (320)
Q Consensus 52 ~~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~----l~--~-------~~~~~i----~~kl~~ 109 (320)
.+..+.+++||+++-. |.++++ +.+|..+..++.+.+.++... +. + ..|+++ .+++.
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~- 236 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV- 236 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE-
Confidence 3577789999999999 788888 999999999999888887432 11 0 122222 22221
Q ss_pred cCCchhHHHHH-HHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeeee
Q psy15138 110 ISPTEEQFDLL-QKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQ 188 (320)
Q Consensus 110 ~~gnyd~~~~l-~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (320)
..+..+.+... .....++..+... ..... . .......++++++++..|...
T Consensus 237 ~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~-----------------~-~~~~~~~~l~~~~l~~~~~~~ 288 (529)
T PRK15134 237 EQNRAATLFSAPTHPYTQKLLNSEP----------SGDPV-----------------P-LPEPASPLLDVEQLQVAFPIR 288 (529)
T ss_pred EeCCHHHHhhCCCCHHHHHHHHhCc----------ccccc-----------------c-cCCCCCCcccccCcEEEeecC
Confidence 22333222110 0000000000000 00000 0 000112246666665555210
Q ss_pred e-------cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----h-----hhhcCc
Q psy15138 189 Y-------LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----H-----EMESGR 249 (320)
Q Consensus 189 ~-------~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~-----~~~~g~ 249 (320)
. ....++++++|. |++++|+||||||||||+++|+ |+++ .+|+|.+++.+.. . ...+++
T Consensus 289 ~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~-Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~ 366 (529)
T PRK15134 289 KGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALL-RLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQV 366 (529)
T ss_pred ccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHh-CcCC-CCcEEEECCEEccccchhhHHHhhhceEE
Confidence 0 123567777776 9999999999999999999999 9985 8999998764311 0 112344
Q ss_pred ceeeec-cccCCccccceeecCCC-C--CCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138 250 TSSVGN-DILGFDSVGNVVNKPEH-G--SLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP 312 (320)
Q Consensus 250 v~~~~~-~~~~~~~~~~~v~~~~~-~--~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~ 312 (320)
++|.+. ..+...++.+++..+.. . ...... ...++.++++.+|+. +..++++.+|||++.
T Consensus 367 v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~ 431 (529)
T PRK15134 367 VFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQ---REQQVIAVMEEVGLDPETRHRYPAEFSGGQR 431 (529)
T ss_pred EEeCchhhcCCcccHHHHHHHHHHhccccCChHH---HHHHHHHHHHHcCCCHHHHhcCCccCCHHHH
Confidence 444331 11212244444443211 1 112222 223445566667776 467899999999653
No 83
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.53 E-value=1.4e-14 Score=125.02 Aligned_cols=112 Identities=26% Similarity=0.296 Sum_probs=87.5
Q ss_pred CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHH
Q psy15138 12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLK 89 (320)
Q Consensus 12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~ 89 (320)
....+.|||+|||++|. |..+...+|.+++ ||++++|+.+++++|+.+++.+++|.++++||+|+. ...+++..+
T Consensus 68 ~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ail--vVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~-~~~~~~~~~ 144 (188)
T PF00009_consen 68 NNRKITLIDTPGHEDFIKEMIRGLRQADIAIL--VVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI-EKELEEIIE 144 (188)
T ss_dssp SSEEEEEEEESSSHHHHHHHHHHHTTSSEEEE--EEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS-HHHHHHHHH
T ss_pred cccceeecccccccceeecccceeccccccee--eeecccccccccccccccccccccceEEeeeeccch-hhhHHHHHH
Confidence 34568999999999999 8899999999999 999999999999999999999999999999999999 667777888
Q ss_pred HHHHhh-cCCCccc-cCcc-ccccCCchhHHHHHHHHHHH
Q psy15138 90 LLVRIL-KSPGCRK-VPVM-NCLISPTEEQFDLLQKKIKS 126 (320)
Q Consensus 90 ~~~~~l-~~~~~~~-i~~k-l~~~~gnyd~~~~l~~q~~~ 126 (320)
++...+ +...+.. .... +..+.-+.+.+..|.+.+.+
T Consensus 145 ~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~ 184 (188)
T PF00009_consen 145 EIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVE 184 (188)
T ss_dssp HHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred HHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHH
Confidence 887444 4433332 1112 22445677778877776654
No 84
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.53 E-value=5.5e-15 Score=129.33 Aligned_cols=123 Identities=13% Similarity=0.150 Sum_probs=77.3
Q ss_pred eeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---h----hhhhcCcceeeec
Q psy15138 186 TGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---K----HEMESGRTSSVGN 255 (320)
Q Consensus 186 ~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~----~~~~~g~v~~~~~ 255 (320)
...|+...++++++|. |++++|+||||||||||+++|+ |+++|++|++.+++... . .......++.++|
T Consensus 5 ~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q 83 (206)
T TIGR03608 5 SKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIG-LLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQ 83 (206)
T ss_pred EEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHh-cCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEec
Confidence 3444445677777775 9999999999999999999999 99999999998875431 0 1111223444444
Q ss_pred cccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 256 DILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 256 ~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
....+ .+..+++..... ....... ..+++.++++.+|+.+..++.+.+|||++.
T Consensus 84 ~~~~~~~~t~~e~~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~ 140 (206)
T TIGR03608 84 NFALIENETVEENLDLGLKYKKLSKKE---KREKKKEALEKVGLNLKLKQKIYELSGGEQ 140 (206)
T ss_pred chhhccCCcHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCchhhhcCChhhCCHHHH
Confidence 43222 233344332211 1111111 233445566667778888999999999653
No 85
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=9.3e-15 Score=130.97 Aligned_cols=132 Identities=16% Similarity=0.068 Sum_probs=80.6
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcce
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTS 251 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~ 251 (320)
++++++++.| +...+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+... ......++
T Consensus 3 l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRF----GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIA-GLERPDSGTILFGGEDATDVPVQERNVG 77 (239)
T ss_pred EEEEeEEEEE----CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEECCcCCccccceE
Confidence 3455444433 334567777775 9999999999999999999999 9999999999987543111 11122344
Q ss_pred eeeccccCC--ccccceeecCCC-CCC-CHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 252 SVGNDILGF--DSVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 252 ~~~~~~~~~--~~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.++|....+ .++.+++..... ... ......+..+++.++++.+|+.+..++.+.+|||++.
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 142 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQR 142 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHH
Confidence 455543322 244444433211 111 0001111223444566667778888999999999654
No 86
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.53 E-value=3.9e-15 Score=131.46 Aligned_cols=116 Identities=21% Similarity=0.191 Sum_probs=74.7
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcCcceeeeccccCC--ccccc
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESGRTSSVGNDILGF--DSVGN 265 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g~v~~~~~~~~~~--~~~~~ 265 (320)
.+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+... ......++.++|+...| .++.+
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 97 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLA-GLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARE 97 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHh-CCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHH
Confidence 467777765 9999999999999999999999 9999999999987543211 11123344455543222 23444
Q ss_pred eeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 266 VVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 266 ~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
++..... ....... ...++.++++.+|+.+..++.+..|||++.
T Consensus 98 ~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 142 (218)
T cd03266 98 NLEYFAGLYGLKGDE---LTARLEELADRLGMEELLDRRVGGFSTGMR 142 (218)
T ss_pred HHHHHHHHcCCCHHH---HHHHHHHHHHHcCCHHHHhhhhhhcCHHHH
Confidence 4432111 1112222 223445566667778888999999999653
No 87
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.53 E-value=1.8e-14 Score=144.89 Aligned_cols=110 Identities=19% Similarity=0.280 Sum_probs=90.4
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCChhHHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCPPNVLQDTLKL 90 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~~~~le~~l~~ 90 (320)
..++|+|||||++|+ |++|++++|.+++ ||++++|+++||+||+.+++.+++| .+||+||+|+++.++++...++
T Consensus 51 ~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL--VVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~e 128 (614)
T PRK10512 51 RVLGFIDVPGHEKFLSNMLAGVGGIDHALL--VVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQ 128 (614)
T ss_pred cEEEEEECCCHHHHHHHHHHHhhcCCEEEE--EEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHH
Confidence 357999999999999 9999999999999 9999999999999999999999997 5789999999998999988889
Q ss_pred HHHhhcCCCccccCccccccCCchhHHHHHHHHHHH
Q psy15138 91 LVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKS 126 (320)
Q Consensus 91 ~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~ 126 (320)
+.+.+...++...+. +..+.-+.+..+++.+.+..
T Consensus 129 i~~~l~~~~~~~~~i-i~VSA~tG~gI~~L~~~L~~ 163 (614)
T PRK10512 129 VKAVLREYGFAEAKL-FVTAATEGRGIDALREHLLQ 163 (614)
T ss_pred HHHHHHhcCCCCCcE-EEEeCCCCCCCHHHHHHHHH
Confidence 988876555443332 22344555667777766654
No 88
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.53 E-value=7.6e-15 Score=131.15 Aligned_cols=123 Identities=14% Similarity=0.033 Sum_probs=75.8
Q ss_pred ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhhhcCcceeeeccccCC-
Q psy15138 189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEMESGRTSSVGNDILGF- 260 (320)
Q Consensus 189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~~~g~v~~~~~~~~~~- 260 (320)
|+...+++++++. |++++|+||||||||||+++|+ |+++|.+|+|.+++.... .......++.++|....+
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~ 88 (236)
T cd03219 10 FGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLIS-GFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFP 88 (236)
T ss_pred ECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHc-CCCCCCCceEEECCEECCCCCHHHHHhcCEEEEeccccccc
Confidence 3334567777775 9999999999999999999999 999999999998754311 111112234444443222
Q ss_pred -ccccceeecCCCCCCCH--------HhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 261 -DSVGNVVNKPEHGSLDW--------VKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 261 -~~~~~~v~~~~~~~~~~--------~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.++.+++.......... ....+...++.++++.+|+.+..++.+++|||++.
T Consensus 89 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 149 (236)
T cd03219 89 ELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQ 149 (236)
T ss_pred CCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHH
Confidence 24444443322110000 00112223455666667778888999999999653
No 89
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.53 E-value=3.9e-15 Score=130.49 Aligned_cols=137 Identities=20% Similarity=0.148 Sum_probs=96.5
Q ss_pred eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc-------hh
Q psy15138 174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH-------KH 243 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~-------~~ 243 (320)
.++++++ .+..++.+.++++++++ |++++|+|||||||||||++++ |..+|++|.+.+.+.+. ..
T Consensus 30 ~li~l~~----v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~-~~~~pssg~~~~~G~~~G~~~~~~el 104 (257)
T COG1119 30 PLIELKN----VSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLT-GEHPPSSGDVTLLGRRFGKGETIFEL 104 (257)
T ss_pred ceEEecc----eEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHh-cccCCCCCceeeeeeeccCCcchHHH
Confidence 3456654 45667788999999997 9999999999999999999999 99999999998765431 22
Q ss_pred hhhcCcceeeecccc-CCccccceeecCCCCCCCHH---hHHHHHHHHHHHhcccCCccccccccccccCCCCCEE
Q psy15138 244 EMESGRTSSVGNDIL-GFDSVGNVVNKPEHGSLDWV---KICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFG 315 (320)
Q Consensus 244 ~~~~g~v~~~~~~~~-~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~~~ 315 (320)
+.++|+++...+..+ .-..+.+++..+.+...+.. ..+....++..+++.+|+.+..+++...||-++...+
T Consensus 105 rk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrv 180 (257)
T COG1119 105 RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRV 180 (257)
T ss_pred HHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHH
Confidence 345677765433322 23456677766655322211 1123445566677788889999999999998765444
No 90
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.52 E-value=4.4e-15 Score=130.44 Aligned_cols=117 Identities=11% Similarity=0.050 Sum_probs=74.3
Q ss_pred ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCC--ccccc
Q psy15138 191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGF--DSVGN 265 (320)
Q Consensus 191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~--~~~~~ 265 (320)
...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+... .....++.++|+...+ .+..+
T Consensus 12 ~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e 89 (210)
T cd03269 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMIL-GIILPDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVID 89 (210)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHH
Confidence 34566666665 9999999999999999999999 9999999999987643211 1122344444443222 23333
Q ss_pred eeecCC-CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 266 VVNKPE-HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 266 ~v~~~~-~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
++.... ........ ..+++.++++.+|+.+..++.+.+|||++.
T Consensus 90 ~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 134 (210)
T cd03269 90 QLVYLAQLKGLKKEE---ARRRIDEWLERLELSEYANKRVEELSKGNQ 134 (210)
T ss_pred HHHHHHHHcCCChHH---HHHHHHHHHHHcCChHHHhCcHhhCCHHHH
Confidence 333211 11111112 223445566667777788899999999654
No 91
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=2e-14 Score=129.63 Aligned_cols=90 Identities=21% Similarity=0.259 Sum_probs=79.2
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCC-CchhHHHHHHHHHHcCCC-cEEEEeCCCCCChhHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAG-IVGMTKEHLGLALALSVP-VFVVVTKIDMCPPNVLQDTLK 89 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g-~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~~~~le~~l~ 89 (320)
..++|+|+||||-+. |++|++-+|-|+| ||+||++ ++|||+|||.-...+++. ++++=||+|+++.+...+.-+
T Consensus 86 R~VSfVDaPGHe~LMATMLsGAAlMDgAlL--vIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~ 163 (415)
T COG5257 86 RRVSFVDAPGHETLMATMLSGAALMDGALL--VIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYE 163 (415)
T ss_pred EEEEEeeCCchHHHHHHHhcchhhhcceEE--EEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHHHHHH
Confidence 459999999999999 9999999999999 9999984 589999999999999995 556669999999988777779
Q ss_pred HHHHhhcCCCccccCc
Q psy15138 90 LLVRILKSPGCRKVPV 105 (320)
Q Consensus 90 ~~~~~l~~~~~~~i~~ 105 (320)
+++++++.....+.|.
T Consensus 164 qIk~FvkGt~Ae~aPI 179 (415)
T COG5257 164 QIKEFVKGTVAENAPI 179 (415)
T ss_pred HHHHHhcccccCCCce
Confidence 9999999877666554
No 92
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.52 E-value=6.8e-16 Score=131.12 Aligned_cols=127 Identities=16% Similarity=0.125 Sum_probs=88.1
Q ss_pred CeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc----hhh---hhcCcceee
Q psy15138 184 GLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH----KHE---MESGRTSSV 253 (320)
Q Consensus 184 ~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~----~~~---~~~g~v~~~ 253 (320)
++.+.|..+++++++++. ||+|+++|||||||||.+.++. |+.+|++|.|.++..+. .+. .-+||.+|.
T Consensus 9 ~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~-Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE 87 (243)
T COG1137 9 NLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIV-GLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQE 87 (243)
T ss_pred hhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEE-EEEecCCceEEECCcccccCChHHHhhcCccccccc
Confidence 445566778889999886 9999999999999999999999 99999999999986551 122 234666655
Q ss_pred eccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 254 GNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 254 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
+.-+-. .++.+++..............++..++.++++.+.+.+..+++...|||+..
T Consensus 88 ~SIFr~-LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGER 145 (243)
T COG1137 88 ASIFRK-LTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGER 145 (243)
T ss_pred chHhhc-CcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchH
Confidence 433222 3455555433221111111123444566777788889999999999999753
No 93
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=7.9e-15 Score=132.83 Aligned_cols=114 Identities=17% Similarity=0.163 Sum_probs=73.3
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-hhhhcCcceeeeccccCC--ccccc
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-HEMESGRTSSVGNDILGF--DSVGN 265 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-~~~~~g~v~~~~~~~~~~--~~~~~ 265 (320)
..++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. .....+++ +|....+ .++.+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~v---~q~~~~~~~~tv~e 89 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIA-GFVPYQHGSITLDGKPVEGPGAERGVV---FQNEGLLPWRNVQD 89 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEECCCCCCcEEEE---eCCCccCCCCcHHH
Confidence 4566777765 9999999999999999999999 999999999998754321 11123444 4432222 23444
Q ss_pred eeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 266 VVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 266 ~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
++..... ....... ...++.++++.+|+.+..++.+..|||++.
T Consensus 90 ~l~~~~~~~~~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~ 134 (255)
T PRK11248 90 NVAFGLQLAGVEKMQ---RLEIAHQMLKKVGLEGAEKRYIWQLSGGQR 134 (255)
T ss_pred HHHhHHHHcCCCHHH---HHHHHHHHHHHcCChhHhhCChhhCCHHHH
Confidence 4433211 1112222 223445566667777788899999999653
No 94
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.52 E-value=8e-15 Score=129.75 Aligned_cols=114 Identities=18% Similarity=0.110 Sum_probs=74.0
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCC--ccccce
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGF--DSVGNV 266 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~--~~~~~~ 266 (320)
..++++++|. |++++|+||||||||||+++|+ |+++|.+|+|.+++.+... ....++.++|....+ .+..++
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~ 93 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIA-GLERPTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDN 93 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEECcc--ccCcEEEEecccccccCCCHHHH
Confidence 4567777765 9999999999999999999999 9999999999987543211 112334444443222 234444
Q ss_pred eecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 267 VNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 267 v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
+..... ...... ...+++.++++.+|+.++.++.+..|||++
T Consensus 94 l~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 136 (220)
T cd03293 94 VALGLELQGVPKA---EARERAEELLELVGLSGFENAYPHQLSGGM 136 (220)
T ss_pred HHHHHHHcCCCHH---HHHHHHHHHHHHcCChhhhhCCcccCCHHH
Confidence 432211 111111 122345566666777888899999999965
No 95
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.52 E-value=4.1e-14 Score=140.04 Aligned_cols=128 Identities=18% Similarity=0.141 Sum_probs=77.0
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---h-hhhc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---H-EMES 247 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~-~~~~ 247 (320)
++++++++. ..+++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. . ....
T Consensus 257 ~l~~~~l~~---------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~-G~~~p~~G~I~~~g~~i~~~~~~~~~~ 326 (501)
T PRK10762 257 RLKVDNLSG---------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLY-GALPRTSGYVTLDGHEVVTRSPQDGLA 326 (501)
T ss_pred EEEEeCccc---------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHh-CCCCCCceEEEECCEECCCCCHHHHHH
Confidence 456666542 246677765 9999999999999999999999 999999999998754311 0 1111
Q ss_pred Ccceeeeccc-----cCCccccceeecCCC---CC-CCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138 248 GRTSSVGNDI-----LGFDSVGNVVNKPEH---GS-LDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP 312 (320)
Q Consensus 248 g~v~~~~~~~-----~~~~~~~~~v~~~~~---~~-~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~ 312 (320)
..+++++|.. +...++.+++..+.. .. .......+..+++.++++.+|+. +..++++..|||++.
T Consensus 327 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 327 NGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred CCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHH
Confidence 2244444442 111234444433211 00 00000111223445566667774 678999999999653
No 96
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.52 E-value=8.9e-15 Score=128.64 Aligned_cols=121 Identities=12% Similarity=0.083 Sum_probs=76.4
Q ss_pred eecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-----hhhhcCcceeeeccccC
Q psy15138 188 QYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-----HEMESGRTSSVGNDILG 259 (320)
Q Consensus 188 ~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-----~~~~~g~v~~~~~~~~~ 259 (320)
.|+...++++++|. |++++|+||||||||||+++|+ |+++|++|++.+++.+.. .......++.++|+...
T Consensus 9 ~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 87 (213)
T cd03262 9 SFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCIN-LLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNL 87 (213)
T ss_pred EECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEECCccchhHHHHHhcceEEeccccc
Confidence 33334567777775 9999999999999999999999 999999999998754321 11112334444544332
Q ss_pred C--ccccceeecCC--CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 260 F--DSVGNVVNKPE--HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 260 ~--~~~~~~v~~~~--~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
+ .+..+++.... ........ ...++.++++.+|+.+..++.+.+|||++.
T Consensus 88 ~~~~t~~e~l~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 141 (213)
T cd03262 88 FPHLTVLENITLAPIKVKGMSKAE---AEERALELLEKVGLADKADAYPAQLSGGQQ 141 (213)
T ss_pred CCCCcHHHHHHhHHHHhcCCCHHH---HHHHHHHHHHHcCCHhHhhhCccccCHHHH
Confidence 2 23344443321 11112222 223344566667777788999999999653
No 97
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.52 E-value=6.1e-15 Score=138.28 Aligned_cols=135 Identities=17% Similarity=0.152 Sum_probs=85.9
Q ss_pred eeeeeeecCCCeeeee---------cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc
Q psy15138 174 VLLRQRKLDNGLTGQY---------LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH 241 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~ 241 (320)
.++++++++..|.... ....++++++|. |++++|+|+||||||||+++|+ |+++|++|+|.+++.+.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~-Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAII-GLVKATDGEVAWLGKDL 85 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHH-CCCCCCCcEEEECCEEC
Confidence 4667777665553210 124577888876 9999999999999999999999 99999999999875441
Q ss_pred h----h--hhhcCcceeeecccc----CCccccceeecCCC---CCCCHHhHHHHHHHHHHHhcccCC-ccccccccccc
Q psy15138 242 K----H--EMESGRTSSVGNDIL----GFDSVGNVVNKPEH---GSLDWVKICERSAKVITFIDLAGH-ERYLKTTVFGM 307 (320)
Q Consensus 242 ~----~--~~~~g~v~~~~~~~~----~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~l~~l~l~gl-~~~~~~~~~~L 307 (320)
. . ....+.++.++|+.. ...++.+++..+.. ......+.. +++.++++.+|+ .+..+++|++|
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~---~~~~~~l~~vgl~~~~~~~~p~~L 162 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVK---DRVKAMMLKVGLLPNLINRYPHEF 162 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHH---HHHHHHHHHcCCChHHhcCCcccC
Confidence 1 1 112345566666532 12344555443221 112322322 334455666666 45789999999
Q ss_pred cCCCC
Q psy15138 308 TGHVP 312 (320)
Q Consensus 308 SG~~~ 312 (320)
||++.
T Consensus 163 SgG~~ 167 (331)
T PRK15079 163 SGGQC 167 (331)
T ss_pred CHHHH
Confidence 99754
No 98
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.52 E-value=9.9e-15 Score=130.10 Aligned_cols=121 Identities=17% Similarity=0.118 Sum_probs=76.1
Q ss_pred eecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhhhcCcceeeeccccCC
Q psy15138 188 QYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEMESGRTSSVGNDILGF 260 (320)
Q Consensus 188 ~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~~~g~v~~~~~~~~~~ 260 (320)
.|+...++++++|. |++++|+||||||||||+++|+ |+++|++|++.+++.... .......++.++|....+
T Consensus 9 ~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (232)
T cd03218 9 RYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIV-GLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIF 87 (232)
T ss_pred EeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCcccc
Confidence 33445577777775 9999999999999999999999 999999999998754311 111112244444443222
Q ss_pred --ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 261 --DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 261 --~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.+..+++..... ....... ...++.++++.+|+.+..++.+..|||++.
T Consensus 88 ~~~tv~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 139 (232)
T cd03218 88 RKLTVEENILAVLEIRGLSKKE---REEKLEELLEEFHITHLRKSKASSLSGGER 139 (232)
T ss_pred ccCcHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCChhhhhCChhhCCHHHH
Confidence 234444433211 1111112 123344556666778888999999999654
No 99
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=4.1e-15 Score=136.09 Aligned_cols=131 Identities=17% Similarity=0.086 Sum_probs=82.3
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g 248 (320)
.++++++++.|.. ...+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.... ......
T Consensus 4 ~l~~~~l~~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 79 (274)
T PRK13647 4 IIEVEDLHFRYKD---GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLN-GIYLPQRGRVKVMGREVNAENEKWVRS 79 (274)
T ss_pred eEEEEEEEEEeCC---CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHh-cCCCCCceEEEECCEECCCCCHHHHHh
Confidence 4566666554421 23466666665 9999999999999999999999 999999999998864321 111122
Q ss_pred cceeeeccc---cCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 249 RTSSVGNDI---LGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 249 ~v~~~~~~~---~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.++.++|.. +...++.+++.++.. ........ ..++.++++.+|+.++.++.|..|||++.
T Consensus 80 ~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~---~~~~~~~l~~~~L~~~~~~~~~~LSgG~~ 144 (274)
T PRK13647 80 KVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEV---ERRVEEALKAVRMWDFRDKPPYHLSYGQK 144 (274)
T ss_pred hEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHH---HHHHHHHHHHCCCHHHhcCChhhCCHHHH
Confidence 344444432 222344455443221 11222222 23445566677778889999999999653
No 100
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.52 E-value=4.9e-15 Score=130.98 Aligned_cols=117 Identities=18% Similarity=0.161 Sum_probs=73.9
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch--hhhhcCcceeeeccccCC--cccc
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK--HEMESGRTSSVGNDILGF--DSVG 264 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~--~~~~~g~v~~~~~~~~~~--~~~~ 264 (320)
..+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. .......++.++|+...+ .+..
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 93 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLT-GELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVR 93 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHH
Confidence 4567777765 9999999999999999999999 999999999998754321 111122344444443222 2333
Q ss_pred ceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 265 NVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 265 ~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
+++..... ........ ..++.++++..++.+..++.+.+|||++.
T Consensus 94 ~~l~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 139 (220)
T cd03263 94 EHLRFYARLKGLPKSEI---KEEVELLLRVLGLTDKANKRARTLSGGMK 139 (220)
T ss_pred HHHHHHHHHcCCCHHHH---HHHHHHHHHHcCCHHHHhChhhhCCHHHH
Confidence 33332111 11111121 23344556666777788899999999654
No 101
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.52 E-value=9.6e-15 Score=128.30 Aligned_cols=117 Identities=21% Similarity=0.133 Sum_probs=73.2
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCcceeeeccc---cCCcc
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGRTSSVGNDI---LGFDS 262 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~v~~~~~~~---~~~~~ 262 (320)
..++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.... .......++..+|.. +...+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 92 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLN-GLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPT 92 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHh-cCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCc
Confidence 4567777765 9999999999999999999999 999999999998754311 111112334444442 11123
Q ss_pred ccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 263 VGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 263 ~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
..+++..... ....... ...++.++++.+|+.+..++.+..|||++.
T Consensus 93 ~~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 140 (211)
T cd03225 93 VEEEVAFGLENLGLPEEE---IEERVEEALELVGLEGLRDRSPFTLSGGQK 140 (211)
T ss_pred HHHHHHHHHHHcCCCHHH---HHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence 4444332211 1111111 123344556666777788899999999653
No 102
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.52 E-value=8.7e-15 Score=130.16 Aligned_cols=134 Identities=15% Similarity=0.147 Sum_probs=81.1
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hh----
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HE---- 244 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~---- 244 (320)
.++++++++.|........++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.... ..
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILA-GLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHH-cCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 466666655443211012356666665 9999999999999999999999 999999999998754311 00
Q ss_pred hhcCcceeeeccccCC--ccccceeecCC-CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 245 MESGRTSSVGNDILGF--DSVGNVVNKPE-HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 245 ~~~g~v~~~~~~~~~~--~~~~~~v~~~~-~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.....++.++|....+ .++.+++.... ........ ..+++.++++.+++.+..++.+..|||++.
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~ 152 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQ---SRNGAKALLEQLGLGKRLDHLPAQLSGGEQ 152 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCCHhHhhCChhhCCHHHH
Confidence 1112344445543322 23344443221 11111112 223445566667778888899999999653
No 103
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.52 E-value=1e-14 Score=147.75 Aligned_cols=254 Identities=17% Similarity=0.084 Sum_probs=131.8
Q ss_pred chhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHh----hc--C-------CCcccc----Cccccc
Q psy15138 52 VGMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRI----LK--S-------PGCRKV----PVMNCL 109 (320)
Q Consensus 52 ~~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~----l~--~-------~~~~~i----~~kl~~ 109 (320)
.+..+.++.||++|-. |.++++ |.+|..+..++.+.+.++..- +. + ..|+++ .+++.
T Consensus 170 SgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~- 248 (623)
T PRK10261 170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV- 248 (623)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec-
Confidence 3577789999999999 788888 999998888888888777532 11 1 234433 33332
Q ss_pred cCCchhHHHHHH-HHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeeee
Q psy15138 110 ISPTEEQFDLLQ-KKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQ 188 (320)
Q Consensus 110 ~~gnyd~~~~l~-~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (320)
..|+++.+.... ......+.+..-..-...+....+. ......+........ ...........+++++++++.|...
T Consensus 249 ~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~l~~~y~~~ 326 (623)
T PRK10261 249 ETGSVEQIFHAPQHPYTRALLAAVPQLGAMKGLDYPRR-FPLISLEHPAKQEPP-IEQDTVVDGEPILQVRNLVTRFPLR 326 (623)
T ss_pred ccCCHHHhhcCCCChhhhhhhhccCcccccccccCCcc-ccccccccccccCcc-cccccccCCCceEEEeeeEEEEcCC
Confidence 345655542110 0000011000000000000000000 000000000000000 0000000112357777776655310
Q ss_pred e-------cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----h--hhhcCccee
Q psy15138 189 Y-------LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----H--EMESGRTSS 252 (320)
Q Consensus 189 ~-------~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~--~~~~g~v~~ 252 (320)
. ....++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. . ......++.
T Consensus 327 ~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~-Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~ 405 (623)
T PRK10261 327 SGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALL-RLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQF 405 (623)
T ss_pred CccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHH-cCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEE
Confidence 0 013567777775 9999999999999999999999 999999999998764311 0 011234555
Q ss_pred eecccc----CCccccceeecCCC-CCC-CHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138 253 VGNDIL----GFDSVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP 312 (320)
Q Consensus 253 ~~~~~~----~~~~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~ 312 (320)
++|+.. ...++.+++..... ... ... +..+++.++++.+|+. +..+++|++|||++.
T Consensus 406 v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~---~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqr 469 (623)
T PRK10261 406 IFQDPYASLDPRQTVGDSIMEPLRVHGLLPGK---AAAARVAWLLERVGLLPEHAWRYPHEFSGGQR 469 (623)
T ss_pred EecCchhhcCCCCCHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHHcCCCHHHhhCCcccCCHHHH
Confidence 555531 11234444432211 111 111 2234455667777775 678999999999754
No 104
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=8.6e-15 Score=134.30 Aligned_cols=132 Identities=13% Similarity=0.109 Sum_probs=82.9
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g 248 (320)
.++++++++.|... ....+++++++. |++++|+||||||||||+++|+ |+++|.+|+|.+++.+.. ......
T Consensus 4 ~l~~~~l~~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (279)
T PRK13650 4 IIEVKNLTFKYKED-QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLID-GLLEAESGQIIIDGDLLTEENVWDIRH 81 (279)
T ss_pred eEEEEeEEEEcCCC-CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEECCEECCcCcHHHHHh
Confidence 35666665555321 112366666665 9999999999999999999999 999999999998764421 111122
Q ss_pred cceeeeccc---cCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 249 RTSSVGNDI---LGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 249 ~v~~~~~~~---~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
.++.++|+. +...++.+++.+... ......... .++.++++.+|+.++.++.+..|||++
T Consensus 82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~---~~~~~~l~~~gL~~~~~~~~~~LSgGq 145 (279)
T PRK13650 82 KIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMK---ERVNEALELVGMQDFKEREPARLSGGQ 145 (279)
T ss_pred hceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHH---HHHHHHHHHCCCHhHhhCCcccCCHHH
Confidence 344444442 222355555544321 122222222 344556666777888899999999965
No 105
>PRK10908 cell division protein FtsE; Provisional
Probab=99.51 E-value=1.2e-14 Score=128.89 Aligned_cols=117 Identities=19% Similarity=0.128 Sum_probs=72.9
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hh--hhcCcceeeeccccCC--
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HE--MESGRTSSVGNDILGF-- 260 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~--~~~g~v~~~~~~~~~~-- 260 (320)
..++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. .. .....++.++|....+
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLIC-GIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMD 93 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccc
Confidence 3466776665 9999999999999999999999 999999999998754311 00 0112334444433221
Q ss_pred ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 261 DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 261 ~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.+..+++..... ......+ ...++.++++.+++.+..++.++.|||++.
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 143 (222)
T PRK10908 94 RTVYDNVAIPLIIAGASGDD---IRRRVSAALDKVGLLDKAKNFPIQLSGGEQ 143 (222)
T ss_pred ccHHHHHHhHHHhcCCCHHH---HHHHHHHHHHHcCChhhhhCCchhCCHHHH
Confidence 233444433211 1122222 223344556667777788899999999653
No 106
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=8.8e-15 Score=134.82 Aligned_cols=133 Identities=17% Similarity=0.137 Sum_probs=81.3
Q ss_pred eeeeecCCCeeeeec-ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---------
Q psy15138 176 LRQRKLDNGLTGQYL-LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK--------- 242 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~-~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~--------- 242 (320)
++++++++.|..... ...+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLN-GLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHh-cCCCCCCcEEEECCEECccccccccHH
Confidence 455666555532111 12366777765 9999999999999999999999 999999999999864311
Q ss_pred -hhhhcCcceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138 243 -HEMESGRTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 -~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~ 312 (320)
....+|+++|.++..+...++.+++.+... ......+..+ ++.++++.+|+. ++.++.+..|||++.
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~---~~~~~l~~~~L~~~~~~~~~~~LSgGqk 150 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK---IAAEKLEMVGLADEFWEKSPFELSGGQM 150 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH---HHHHHHHHcCCChhhccCCcccCCHHHH
Confidence 112345555543222222355555543321 1222233333 344555566664 577899999999653
No 107
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.51 E-value=5e-15 Score=128.08 Aligned_cols=116 Identities=21% Similarity=0.111 Sum_probs=72.8
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-----hhhhcCcceeeeccc---cCCc
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-----HEMESGRTSSVGNDI---LGFD 261 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-----~~~~~g~v~~~~~~~---~~~~ 261 (320)
.+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. .......++.++|+. +...
T Consensus 6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLN-GLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 456666665 9999999999999999999999 999999999998754321 001112344444442 1112
Q ss_pred cccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 262 SVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 262 ~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
++.+++..... ........ .+++.++++.+|+.++.++.+..|||++.
T Consensus 85 tv~~nl~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 133 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEV---ERRVREALTAVGASGLRERPTHCLSGGEK 133 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHcCchhhhhCChhhCCHHHH
Confidence 44444433211 11122222 23344566667778888999999999653
No 108
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.51 E-value=6.3e-14 Score=138.68 Aligned_cols=228 Identities=16% Similarity=0.128 Sum_probs=121.2
Q ss_pred hhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHh---hc--C-------CCcccc----CccccccC
Q psy15138 53 GMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRI---LK--S-------PGCRKV----PVMNCLIS 111 (320)
Q Consensus 53 ~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~---l~--~-------~~~~~i----~~kl~~~~ 111 (320)
+..+.+++||+++-. |.++++ +.+|..+..++.+.+.++.+. +. + ..|+++ .+++.. .
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~-~ 222 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVA-T 222 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEee-e
Confidence 567789999999999 778888 999999999999888887541 11 0 112222 112111 1
Q ss_pred CchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeeeeecc
Q psy15138 112 PTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQYLL 191 (320)
Q Consensus 112 gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (320)
++.+.+.. ....+... +..... .+.. ........++++++++..|... +.
T Consensus 223 ~~~~~~~~--~~~~~~~~---~~~~~~----------------------~~~~--~~~~~~~~~l~~~~l~~~~~~~-~~ 272 (500)
T TIGR02633 223 KDMSTMSE--DDIITMMV---GREITS----------------------LYPH--EPHEIGDVILEARNLTCWDVIN-PH 272 (500)
T ss_pred cCcccCCH--HHHHHHHh---Cccccc----------------------cccc--cccCCCCceEEEeCCccccccc-cc
Confidence 11111100 00000000 000000 0000 0000111257777776554211 12
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-CCceeeeccccch----h---hhhcCcceeeec--ccc
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-GRGHARQKLFRHK----H---EMESGRTSSVGN--DIL 258 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-~~G~i~~~~~~~~----~---~~~~g~v~~~~~--~~~ 258 (320)
..++++++|. |++++|+||||||||||+++|+ |+++| .+|+|.+++.+.. . ...+++++|.+. ..+
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~-G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~ 351 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALF-GAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIV 351 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHh-CCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcC
Confidence 3467777775 9999999999999999999999 99985 8999998754321 0 112344444432 111
Q ss_pred CCccccceeecCCCCCC---CHHhHHHHHHHHHHHhcccCCcc-ccccccccccCCCC
Q psy15138 259 GFDSVGNVVNKPEHGSL---DWVKICERSAKVITFIDLAGHER-YLKTTVFGMTGHVP 312 (320)
Q Consensus 259 ~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~l~~l~l~gl~~-~~~~~~~~LSG~~~ 312 (320)
...++.+++........ ......+...++.++++.+++.+ ..++++..|||++.
T Consensus 352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 409 (500)
T TIGR02633 352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQ 409 (500)
T ss_pred CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHH
Confidence 11233444433211000 00001112234445666667763 57899999999654
No 109
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=8.4e-15 Score=134.82 Aligned_cols=133 Identities=14% Similarity=0.094 Sum_probs=81.8
Q ss_pred eeeeecCCCeeeee-cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---------
Q psy15138 176 LRQRKLDNGLTGQY-LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK--------- 242 (320)
Q Consensus 176 ~~~~~~~~~~~~~~-~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~--------- 242 (320)
++++++++.|.... ....+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~-Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNIN-ALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEECCEECccccccchHH
Confidence 45555554442111 013467777775 9999999999999999999999 999999999998754321
Q ss_pred -hhhhcCcceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138 243 -HEMESGRTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 -~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~ 312 (320)
....+|+++|.+...+...++.+++.++.. ......... .++.++++.+|+. +..++.+..|||++.
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~---~~~~~~l~~~gL~~~~~~~~~~~LSgGq~ 151 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVK---NYAHRLLMDLGFSRDVMSQSPFQMSGGQM 151 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHH---HHHHHHHHHcCCChhhhhCCcccCCHHHH
Confidence 111244555443211211245555544321 122222222 3344556667776 678899999999654
No 110
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.51 E-value=7.2e-14 Score=138.58 Aligned_cols=231 Identities=10% Similarity=0.022 Sum_probs=124.7
Q ss_pred hhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHh---hc--C-------CCcccc----CccccccC
Q psy15138 53 GMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRI---LK--S-------PGCRKV----PVMNCLIS 111 (320)
Q Consensus 53 ~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~---l~--~-------~~~~~i----~~kl~~~~ 111 (320)
+..+.+++||+++-. |.++++ +.+|..+..++.+.+.++.+. +. + ..|+++ .+++ .+.
T Consensus 143 gG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i-~~~ 221 (510)
T PRK15439 143 VADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTI-ALS 221 (510)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE-EEe
Confidence 467789999999999 788888 999999999999998887531 11 1 234433 3333 345
Q ss_pred CchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeeeeecc
Q psy15138 112 PTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQYLL 191 (320)
Q Consensus 112 gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (320)
|+++.+.... ........... ..+. ........ +............++++++++.
T Consensus 222 g~~~~~~~~~--~~~~~~~~~~~--~~~~-~~~~~~~~------------~~~~~~~~~~~~~~l~~~~l~~-------- 276 (510)
T PRK15439 222 GKTADLSTDD--IIQAITPAARE--KSLS-ASQKLWLE------------LPGNRRQQAAGAPVLTVEDLTG-------- 276 (510)
T ss_pred cChHHcCHHH--HHHHHhCcccc--cccc-cccccccc------------ccccccccCCCCceEEEeCCCC--------
Confidence 6776653311 11111110000 0000 00000000 0000000001123566666652
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hh---hhcCcceeeecc--ccC
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HE---MESGRTSSVGND--ILG 259 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~---~~~g~v~~~~~~--~~~ 259 (320)
..+++++|. |++++|+||||||||||+++|+ |+++|.+|+|.+++.+.. .. ..+++++|.++. .+.
T Consensus 277 -~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~-Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~ 354 (510)
T PRK15439 277 -EGFRNISLEVRAGEILGLAGVVGAGRTELAETLY-GLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYL 354 (510)
T ss_pred -CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHc-CCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccC
Confidence 136666665 9999999999999999999999 999999999998754311 11 123444443221 111
Q ss_pred CccccceeecCCCC--CCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138 260 FDSVGNVVNKPEHG--SLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP 312 (320)
Q Consensus 260 ~~~~~~~v~~~~~~--~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~ 312 (320)
..+..+++...... ...... .+..+++.++++.+|+. +..++++..|||++.
T Consensus 355 ~~t~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~k 409 (510)
T PRK15439 355 DAPLAWNVCALTHNRRGFWIKP-ARENAVLERYRRALNIKFNHAEQAARTLSGGNQ 409 (510)
T ss_pred CCcHHHHHHhhhhhhhccccCh-HHHHHHHHHHHHHcCCCCCCccCccccCCcHHH
Confidence 11222332111000 000001 11123345566667776 678999999999754
No 111
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.51 E-value=1.3e-14 Score=129.54 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=74.6
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh----h--hhcCcceeeeccccCC--c
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH----E--MESGRTSSVGNDILGF--D 261 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~----~--~~~g~v~~~~~~~~~~--~ 261 (320)
.++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+... . .....++.++|....| .
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCIN-GLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR 97 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCC
Confidence 567777775 9999999999999999999999 9999999999987543211 0 1122344445543333 2
Q ss_pred cccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 262 SVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 262 ~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
+..+++..... ....... ...++.++++.+|+.+..++.+..|||++.
T Consensus 98 t~~e~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 146 (233)
T cd03258 98 TVFENVALPLEIAGVPKAE---IEERVLELLELVGLEDKADAYPAQLSGGQK 146 (233)
T ss_pred cHHHHHHHHHHHcCCCHHH---HHHHHHHHHHHCCChhhhhcChhhCCHHHH
Confidence 34444432211 1111111 223445566667778888899999999653
No 112
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.51 E-value=2.4e-14 Score=130.70 Aligned_cols=89 Identities=26% Similarity=0.298 Sum_probs=80.7
Q ss_pred CCCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCC-CcEEEEeCCCCC--ChhHH
Q psy15138 10 CTAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSV-PVFVVVTKIDMC--PPNVL 84 (320)
Q Consensus 10 ~~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~--~~~~l 84 (320)
.|++..+-|.|+||||-|. |.+|++-+|.+++ .|+|..|+..|||+|-.|+.+||| .++|++|||||+ +++.+
T Consensus 82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIl--LVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 82 STEKRKFIIADTPGHEQYTRNMATGASTADLAIL--LVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred ccccceEEEecCCcHHHHhhhhhcccccccEEEE--EEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHH
Confidence 4788889999999999999 9999999999999 999999999999999999999999 588999999995 78999
Q ss_pred HHHHHHHHHhhcCCCc
Q psy15138 85 QDTLKLLVRILKSPGC 100 (320)
Q Consensus 85 e~~l~~~~~~l~~~~~ 100 (320)
+++..++..+....+.
T Consensus 160 ~~I~~dy~~fa~~L~~ 175 (431)
T COG2895 160 EAIVADYLAFAAQLGL 175 (431)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999887664333
No 113
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=7.5e-15 Score=134.09 Aligned_cols=129 Identities=14% Similarity=0.071 Sum_probs=78.7
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-----hhhhc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-----HEMES 247 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-----~~~~~ 247 (320)
++++++++.| +...+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. .....
T Consensus 2 l~~~~l~~~~----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 76 (271)
T PRK13638 2 LATSDLWFRY----QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLS-GLLRPQKGAVLWQGKPLDYSKRGLLALR 76 (271)
T ss_pred eEEEEEEEEc----CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHc-CCCCCCccEEEECCEEcccccCCHHHHH
Confidence 3445444433 334577777776 9999999999999999999999 999999999998764321 01111
Q ss_pred Ccceeeeccc---cCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 248 GRTSSVGNDI---LGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 248 g~v~~~~~~~---~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
..++.++|+. +...+..+++..... ........ ..++.++++.+|+.++.++.+..|||++.
T Consensus 77 ~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 142 (271)
T PRK13638 77 QQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEI---TRRVDEALTLVDAQHFRHQPIQCLSHGQK 142 (271)
T ss_pred hheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHcCCHhHhcCCchhCCHHHH
Confidence 2344444442 112233333322111 11122222 23344556666777788899999999653
No 114
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=9.3e-15 Score=134.79 Aligned_cols=133 Identities=19% Similarity=0.149 Sum_probs=81.5
Q ss_pred eeeeecCCCeeeeec-ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-------h-
Q psy15138 176 LRQRKLDNGLTGQYL-LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-------H- 243 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~-~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-------~- 243 (320)
++++++++.|..... ...+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.... .
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLN-GLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHh-cCCCCCCcEEEECCEECccccccchHH
Confidence 455555555432110 13467777765 9999999999999999999999 999999999999865321 1
Q ss_pred --hhhcCcceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138 244 --EMESGRTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP 312 (320)
Q Consensus 244 --~~~~g~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~ 312 (320)
...+|+++|.+...+...++.+++.++.. ....+....+ ++.++++.+|+. +..++++..|||++.
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~~~~~l~~~gL~~~~~~~~~~~LSgGq~ 151 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQ---KAREMIELVGLPEELLARSPFELSGGQM 151 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHCCCChhhhhCCcccCCHHHH
Confidence 11245555543211211245555543321 1223333222 344556666775 567899999999653
No 115
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.50 E-value=1.2e-14 Score=134.69 Aligned_cols=129 Identities=15% Similarity=0.071 Sum_probs=80.3
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcCcc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESGRT 250 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g~v 250 (320)
++++++++.| +...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+... ......+
T Consensus 3 l~~~~l~~~~----~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~-Gl~~~~~G~i~i~g~~~~~~~~~~~~~i 77 (301)
T TIGR03522 3 IRVSSLTKLY----GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIIT-GYLPPDSGSVQVCGEDVLQNPKEVQRNI 77 (301)
T ss_pred EEEEEEEEEE----CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEEcccChHHHHhce
Confidence 4455444433 345567777775 9999999999999999999999 9999999999987644211 1112234
Q ss_pred eeeeccccCC--ccccceeecCC-CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 251 SSVGNDILGF--DSVGNVVNKPE-HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 251 ~~~~~~~~~~--~~~~~~v~~~~-~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
+..+|....+ .++.+++.... .....+.... .++.++++.+|+.+..++.+..|||++.
T Consensus 78 g~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~---~~~~~~l~~~gl~~~~~~~~~~LS~G~~ 139 (301)
T TIGR03522 78 GYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLK---QRVEEMIELVGLRPEQHKKIGQLSKGYR 139 (301)
T ss_pred EEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHCCCchHhcCchhhCCHHHH
Confidence 4444443222 23444443211 1112222222 2344556666778888999999999653
No 116
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.50 E-value=2.1e-14 Score=128.87 Aligned_cols=120 Identities=16% Similarity=0.072 Sum_probs=74.7
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh------hhhcCcceeeeccccCC--
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH------EMESGRTSSVGNDILGF-- 260 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~------~~~~g~v~~~~~~~~~~-- 260 (320)
..++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+... ......++.++|....+
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCIN-RLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIER 93 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHh-CCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccc
Confidence 4567777775 9999999999999999999999 9999999999987643110 01122334444443222
Q ss_pred ccccceeecCCCCC------CCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 261 DSVGNVVNKPEHGS------LDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 261 ~~~~~~v~~~~~~~------~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.++.+++..+.... .......+...++.++++.+|+.+..++.+..|||++.
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 151 (243)
T TIGR02315 94 LTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQ 151 (243)
T ss_pred ccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence 24444443321110 00000011223455566667778888999999999654
No 117
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.50 E-value=1.9e-14 Score=128.88 Aligned_cols=119 Identities=18% Similarity=0.116 Sum_probs=74.9
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch------hhhhcCcceeeeccccCC--
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK------HEMESGRTSSVGNDILGF-- 260 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~------~~~~~g~v~~~~~~~~~~-- 260 (320)
..+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. .......++.++|+...|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLN-GLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIER 92 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHh-CCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCccccc
Confidence 4567777765 9999999999999999999999 999999999998764311 111122344445543222
Q ss_pred ccccceeecCCCCC-------CCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 261 DSVGNVVNKPEHGS-------LDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 261 ~~~~~~v~~~~~~~-------~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.++.+++....... ..... ....+++.++++.+++.+..++.+.+|||++.
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 150 (241)
T cd03256 93 LSVLENVLSGRLGRRSTWRSLFGLFP-KEEKQRALAALERVGLLDKAYQRADQLSGGQQ 150 (241)
T ss_pred CcHHHHHHhhhcccchhhhhhcccCc-HHHHHHHHHHHHHcCChhhhCCCcccCCHHHH
Confidence 24444443321110 00000 11223445566667778888999999999654
No 118
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.50 E-value=1.6e-14 Score=127.24 Aligned_cols=117 Identities=20% Similarity=0.129 Sum_probs=73.8
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----h--hhhcCcceeeeccccCC--
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----H--EMESGRTSSVGNDILGF-- 260 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~--~~~~g~v~~~~~~~~~~-- 260 (320)
..++++++|. |++++|+||||||||||+++|+ |+++|.+|+|.+++.+.. . ......++.++|....+
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLY-GALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD 93 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence 3467777765 9999999999999999999999 999999999998754311 0 01112344444443222
Q ss_pred ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 261 DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 261 ~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.+..+++..... ....... ...++.++++.+++.+..++.+..|||++.
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 143 (214)
T TIGR02673 94 RTVYENVALPLEVRGKKERE---IQRRVGAALRQVGLEHKADAFPEQLSGGEQ 143 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHH---HHHHHHHHHHHcCChhhhhCChhhCCHHHH
Confidence 233343332211 1111211 223445566667777788899999999653
No 119
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.50 E-value=3.2e-14 Score=126.95 Aligned_cols=105 Identities=20% Similarity=0.215 Sum_probs=77.8
Q ss_pred eeeeeecCCCeeeeec-----ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhh
Q psy15138 175 LLRQRKLDNGLTGQYL-----LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEME 246 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~-----~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~ 246 (320)
+++++++.+.|..... ...++++++|. |+.++|||.||||||||-|+|. |+++|++|+|.+.+.+...
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~-~L~~pt~G~i~f~g~~i~~--- 79 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLIL-GLEEPTSGEILFEGKDITK--- 79 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHH-cCcCCCCceEEEcCcchhh---
Confidence 4566666555443221 35788889886 9999999999999999999999 9999999999987543111
Q ss_pred cCcceeeeccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCCCE
Q psy15138 247 SGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVPDF 314 (320)
Q Consensus 247 ~g~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~~~ 314 (320)
+. ..+..+++.++++.+|+. +++.++|+++||++...
T Consensus 80 -------------~~------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR 117 (268)
T COG4608 80 -------------LS------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR 117 (268)
T ss_pred -------------cc------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence 00 223445566777777775 58999999999988654
No 120
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=9.4e-15 Score=134.11 Aligned_cols=134 Identities=11% Similarity=0.065 Sum_probs=82.9
Q ss_pred eeeeeecCCCeeeee--cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh----hh
Q psy15138 175 LLRQRKLDNGLTGQY--LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH----EM 245 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~--~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~----~~ 245 (320)
+++++++++.|.... ....++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+... ..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMN-ALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEeccccccHHH
Confidence 456666665553211 123467777775 9999999999999999999999 9999999999998544211 11
Q ss_pred hcCcceeeeccc---cCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 246 ESGRTSSVGNDI---LGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 246 ~~g~v~~~~~~~---~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
....++.++|+. +...++.+++.+... ........ .+++.++++.+|+.++.++.+.+|||++.
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~---~~~~~~~l~~~gL~~~~~~~~~~LS~G~~ 150 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEI---RERVDESLKKVGMYEYRRHAPHLLSGGQK 150 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHH---HHHHHHHHHHCCCHhHhhCCcccCCHHHH
Confidence 122334444442 211233444433211 11222222 23445566677778889999999999653
No 121
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.50 E-value=1.4e-14 Score=127.39 Aligned_cols=117 Identities=14% Similarity=0.152 Sum_probs=73.6
Q ss_pred ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcCcceeeeccccCC--ccc
Q psy15138 191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESGRTSSVGNDILGF--DSV 263 (320)
Q Consensus 191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g~v~~~~~~~~~~--~~~ 263 (320)
...++++++|. | +++|+||||||||||+++|+ |+++|++|+|.+++.+... ......++.++|+...| .++
T Consensus 12 ~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 12 KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILA-TLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHh-CCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 34567777765 8 99999999999999999999 9999999999987643110 11123344445443332 234
Q ss_pred cceeecCC-CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 264 GNVVNKPE-HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 264 ~~~v~~~~-~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.+++.... .......+. ..++.++++.+|+.+..++.+..|||++.
T Consensus 90 ~~~l~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 136 (211)
T cd03264 90 REFLDYIAWLKGIPSKEV---KARVDEVLELVNLGDRAKKKIGSLSGGMR 136 (211)
T ss_pred HHHHHHHHHHhCCCHHHH---HHHHHHHHHHCCCHHHHhCchhhCCHHHH
Confidence 44443211 111111222 23344556667777788899999999653
No 122
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.49 E-value=1.2e-14 Score=120.49 Aligned_cols=117 Identities=17% Similarity=0.105 Sum_probs=82.1
Q ss_pred ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc---chhhhhcCcceeeeccccCC-ccc
Q psy15138 191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR---HKHEMESGRTSSVGNDILGF-DSV 263 (320)
Q Consensus 191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~---~~~~~~~g~v~~~~~~~~~~-~~~ 263 (320)
..+.+++++|. |++++|+||||||||||+|+++ .+.+|++|.+.+.+.. ...+..+-.++++.|..-.| +++
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va-~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVA-SLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHH-hccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 45677777776 9999999999999999999999 9999999999998655 22333444556665555444 677
Q ss_pred cceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138 264 GNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP 312 (320)
Q Consensus 264 ~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~ 312 (320)
++++.++......+. ....+..++..+++. .++.+.+..|||+..
T Consensus 94 eDNlifP~~~r~rr~----dr~aa~~llar~~l~~~~L~k~it~lSGGE~ 139 (223)
T COG4619 94 EDNLIFPWQIRNRRP----DRAAALDLLARFALPDSILTKNITELSGGEK 139 (223)
T ss_pred hhccccchHHhccCC----ChHHHHHHHHHcCCchhhhcchhhhccchHH
Confidence 888777654221111 123344455556654 468899999999764
No 123
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.49 E-value=1.8e-14 Score=128.89 Aligned_cols=118 Identities=19% Similarity=0.141 Sum_probs=74.0
Q ss_pred ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcCcceeeeccccCC--ccc
Q psy15138 191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESGRTSSVGNDILGF--DSV 263 (320)
Q Consensus 191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g~v~~~~~~~~~~--~~~ 263 (320)
...+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+... ......++..+|....+ .+.
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~ 91 (236)
T TIGR03864 13 ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLT-RLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSV 91 (236)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcH
Confidence 34567777665 9999999999999999999999 9999999999987543110 01112344444443221 233
Q ss_pred cceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 264 GNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 264 ~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.+++..... ....... ...++.++++.+|+.+..++.+..|||++.
T Consensus 92 ~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~ 138 (236)
T TIGR03864 92 RQNLRYHAALHGLSRAE---ARERIAALLARLGLAERADDKVRELNGGHR 138 (236)
T ss_pred HHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCChhhhcCChhhCCHHHH
Confidence 333332211 1111111 223445566667778888999999999654
No 124
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=1.3e-14 Score=133.19 Aligned_cols=131 Identities=18% Similarity=0.108 Sum_probs=82.8
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g 248 (320)
.++++++.+.|... ...+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. ......
T Consensus 5 ~l~~~~l~~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~-G~~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (279)
T PRK13635 5 IIRVEHISFRYPDA--ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLN-GLLLPEAGTITVGGMVLSEETVWDVRR 81 (279)
T ss_pred eEEEEEEEEEeCCC--CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh-cCCCCCCcEEEECCEECCcCcHHHHhh
Confidence 45666665554211 12356666665 9999999999999999999999 999999999999865421 111122
Q ss_pred cceeeeccc---cCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 249 RTSSVGNDI---LGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 249 ~v~~~~~~~---~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
.++.++|+. +...++.+++..... ....... ...++.++++.+|+.++.++.+..|||++
T Consensus 82 ~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~---~~~~~~~~l~~~gL~~~~~~~~~~LS~G~ 145 (279)
T PRK13635 82 QVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREE---MVERVDQALRQVGMEDFLNREPHRLSGGQ 145 (279)
T ss_pred heEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHH---HHHHHHHHHHHcCChhhhhCCcccCCHHH
Confidence 344444443 222345555543321 1122222 23345566667777888999999999964
No 125
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.49 E-value=1.7e-13 Score=135.68 Aligned_cols=118 Identities=17% Similarity=0.147 Sum_probs=72.2
Q ss_pred ccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhhhcCcceeeeccc-----cCCc
Q psy15138 194 RVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEMESGRTSSVGNDI-----LGFD 261 (320)
Q Consensus 194 ~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~~~g~v~~~~~~~-----~~~~ 261 (320)
.++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. .......+++++|.. +...
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~-G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLY-GATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHc-CCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 56677765 9999999999999999999999 999999999998754311 111112334444432 2112
Q ss_pred cccceeecCCCCC-C--C-HHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138 262 SVGNVVNKPEHGS-L--D-WVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP 312 (320)
Q Consensus 262 ~~~~~v~~~~~~~-~--~-~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~ 312 (320)
+..+++....... . . +.......+++.++++.+++. +..++++..|||++.
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 402 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQ 402 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHH
Confidence 3444443321110 0 0 000111123455666677773 678999999999653
No 126
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.49 E-value=2.9e-14 Score=129.21 Aligned_cols=124 Identities=19% Similarity=0.115 Sum_probs=80.2
Q ss_pred eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcc
Q psy15138 174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRT 250 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v 250 (320)
..++++++++.|. ...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.... .....+
T Consensus 11 ~~l~i~~l~~~~~----~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~-Gl~~p~~G~i~~~g~~~~--~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYG----ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLA-GLETPSAGELLAGTAPLA--EAREDT 83 (257)
T ss_pred CcEEEEEEEEEEC----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCeEEEECCEEHH--HhhCce
Confidence 4567776655543 34566777665 9999999999999999999999 999999999987643211 111233
Q ss_pred eeeeccccCC--ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 251 SSVGNDILGF--DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 251 ~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
+.++|....+ .++.+++...... .. ..++.++++.+|+.+..++.+..|||++.
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~-----~~---~~~~~~~l~~~gl~~~~~~~~~~LSgGqk 139 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKG-----QW---RDAALQALAAVGLADRANEWPAALSGGQK 139 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccc-----hH---HHHHHHHHHHcCChhHhcCChhhCCHHHH
Confidence 4444443222 2444444332111 11 12344556667778888999999999653
No 127
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.49 E-value=2.9e-15 Score=136.35 Aligned_cols=140 Identities=17% Similarity=0.198 Sum_probs=84.8
Q ss_pred eeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-C----CCceeeecccc-----c--
Q psy15138 177 RQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-N----GRGHARQKLFR-----H-- 241 (320)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-~----~~G~i~~~~~~-----~-- 241 (320)
+++++.-.|....+..+++++++|. ||++||||.|||||||+.+.|. |+++ | .+|+|.+++.+ .
T Consensus 3 ~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim-~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 3 EVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIM-GLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred eEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHH-hccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 3444433333333346788888886 9999999999999999999999 9998 4 46888887653 1
Q ss_pred hhhhhcCcceeeeccccC-Cccc---cceeecCCCC--CC-CHHhHHHHHHHHHHHhcccCCccccccccccccCCCCCE
Q psy15138 242 KHEMESGRTSSVGNDILG-FDSV---GNVVNKPEHG--SL-DWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDF 314 (320)
Q Consensus 242 ~~~~~~g~v~~~~~~~~~-~~~~---~~~v~~~~~~--~~-~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~~ 314 (320)
....+-..++.+||+... ++++ ++.+...... .. .+.+..+++.++++.+++.+-++..+.+|++|||++...
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQR 161 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQR 161 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHH
Confidence 112233456677776543 3332 2222222111 11 222333334444444444333458899999999988766
Q ss_pred EEE
Q psy15138 315 GML 317 (320)
Q Consensus 315 ~~l 317 (320)
+|+
T Consensus 162 V~I 164 (316)
T COG0444 162 VMI 164 (316)
T ss_pred HHH
Confidence 544
No 128
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.49 E-value=8.6e-14 Score=137.41 Aligned_cols=233 Identities=16% Similarity=0.101 Sum_probs=124.3
Q ss_pred hhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHHh---hc--C-------CCcccc----CccccccC
Q psy15138 53 GMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVRI---LK--S-------PGCRKV----PVMNCLIS 111 (320)
Q Consensus 53 ~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~~---l~--~-------~~~~~i----~~kl~~~~ 111 (320)
+..+.+++||+++-. |.++++ +.+|..+..++.+.+.++.+. +. + ..|+.+ .+++ ...
T Consensus 138 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i-~~~ 216 (490)
T PRK10938 138 TGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTL-AET 216 (490)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEE-EEe
Confidence 567789999999999 888888 999999999999999888541 11 1 223332 2333 233
Q ss_pred CchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeeeeecc
Q psy15138 112 PTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQYLL 191 (320)
Q Consensus 112 gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (320)
++.+.+.... ...++.. .+........ .. .+ . ... .........++++++++.| +.
T Consensus 217 ~~~~~~~~~~--~~~~~~~--~~~~~~~~~~-~~-------~~---~--~~~---~~~~~~~~~l~~~~l~~~~----~~ 272 (490)
T PRK10938 217 GEREEILQQA--LVAQLAH--SEQLEGVQLP-EP-------DE---P--SAR---HALPANEPRIVLNNGVVSY----ND 272 (490)
T ss_pred CCHHHHhcch--hhhhhhh--hhccCccccC-cc-------cc---c--ccc---cccCCCCceEEEeceEEEE----CC
Confidence 4544432110 0011100 0000000000 00 00 0 000 0000112356777665544 33
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-CCceeeeccccch-------hhhhcCcceeeeccccCC
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-GRGHARQKLFRHK-------HEMESGRTSSVGNDILGF 260 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-~~G~i~~~~~~~~-------~~~~~g~v~~~~~~~~~~ 260 (320)
..++++++|. |++++|+||||||||||+++|+ |+.++ ++|+|.+++.... ....+++++|.+.....+
T Consensus 273 ~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~-G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 351 (490)
T PRK10938 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLIT-GDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRV 351 (490)
T ss_pred eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHc-CCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhccc
Confidence 4467777775 9999999999999999999999 98876 6999998764310 111234444432111111
Q ss_pred -ccccceeecCCCC--C-CCHHhHHHHHHHHHHHhcccCCcc-ccccccccccCCCC
Q psy15138 261 -DSVGNVVNKPEHG--S-LDWVKICERSAKVITFIDLAGHER-YLKTTVFGMTGHVP 312 (320)
Q Consensus 261 -~~~~~~v~~~~~~--~-~~~~~~~~~~~~~l~~l~l~gl~~-~~~~~~~~LSG~~~ 312 (320)
.+..+++...... . ..... .+..+++.++++.+|+.+ ..++++..|||++.
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 407 (490)
T PRK10938 352 STSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQ 407 (490)
T ss_pred CCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCchhhCCHHHH
Confidence 2233333221110 0 00000 111233445666677776 78999999999654
No 129
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=1.5e-14 Score=132.64 Aligned_cols=131 Identities=20% Similarity=0.194 Sum_probs=81.0
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g 248 (320)
+++++++++.|.. ...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. ......
T Consensus 3 ~l~~~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 78 (277)
T PRK13652 3 LIETRDLCYSYSG---SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFN-GILKPTSGSVLIRGEPITKENIREVRK 78 (277)
T ss_pred eEEEEEEEEEeCC---CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEECCEECCcCCHHHHHh
Confidence 3556665554421 12356666665 9999999999999999999999 999999999998764321 111122
Q ss_pred cceeeeccc---cCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 249 RTSSVGNDI---LGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 249 ~v~~~~~~~---~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.++.++|+. +...++.+++..... ........ .+++.++++.+|+.+..++.+..|||++.
T Consensus 79 ~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~ 143 (277)
T PRK13652 79 FVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETV---AHRVSSALHMLGLEELRDRVPHHLSGGEK 143 (277)
T ss_pred heEEEecCcccccccccHHHHHHhHHHHcCCCHHHH---HHHHHHHHHHCCChhHhcCCcccCCHHHH
Confidence 334444432 211244444433211 11222222 23345566677778888999999999653
No 130
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.49 E-value=2.6e-14 Score=126.93 Aligned_cols=117 Identities=20% Similarity=0.187 Sum_probs=71.3
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh------hhhcCcceeeeccc---cC-
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH------EMESGRTSSVGNDI---LG- 259 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~------~~~~g~v~~~~~~~---~~- 259 (320)
.+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++..... ......++.++|+. +.
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAIL-GLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNP 97 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCC
Confidence 467777775 9999999999999999999999 9999999999987543211 11123344445543 11
Q ss_pred CccccceeecCCC-CCCCHHhHHHHHHH-HHHHhcccCCc-cccccccccccCCCC
Q psy15138 260 FDSVGNVVNKPEH-GSLDWVKICERSAK-VITFIDLAGHE-RYLKTTVFGMTGHVP 312 (320)
Q Consensus 260 ~~~~~~~v~~~~~-~~~~~~~~~~~~~~-~l~~l~l~gl~-~~~~~~~~~LSG~~~ 312 (320)
..++.+++..... ....... +...+ +.++++..++. ...++.+..|||++.
T Consensus 98 ~~tv~~nl~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~ 151 (228)
T cd03257 98 RMTIGEQIAEPLRIHGKLSKK--EARKEAVLLLLVGVGLPEEVLNRYPHELSGGQR 151 (228)
T ss_pred cCCHHHHHHHHHHhccCCcHH--HHHHHHHHHHHHHCCCChhHhhCCchhcCHHHH
Confidence 1233444432211 1111111 11111 12455566664 577899999999653
No 131
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.48 E-value=2.6e-14 Score=128.13 Aligned_cols=117 Identities=13% Similarity=0.058 Sum_probs=74.5
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-----hhhcCcceeeeccccCC--c
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-----EMESGRTSSVGNDILGF--D 261 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-----~~~~g~v~~~~~~~~~~--~ 261 (320)
..++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+... ......++.++|....+ .
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCIN-KLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHL 92 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCC
Confidence 4567777765 9999999999999999999999 9999999999988643211 11112334444443222 2
Q ss_pred cccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 262 SVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 262 ~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
++.+++..... ....... ...++.++++.+|+.+..++.+..|||++.
T Consensus 93 tv~~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~ 142 (240)
T PRK09493 93 TALENVMFGPLRVRGASKEE---AEKQARELLAKVGLAERAHHYPSELSGGQQ 142 (240)
T ss_pred cHHHHHHhHHHHhcCCCHHH---HHHHHHHHHHHcCChHHHhcChhhcCHHHH
Confidence 44444433211 1112222 223445566667778888999999999653
No 132
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.48 E-value=2.6e-14 Score=130.47 Aligned_cols=130 Identities=18% Similarity=0.091 Sum_probs=81.6
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---h---hh
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---H---EM 245 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~---~~ 245 (320)
+++++++++.| +...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. . ..
T Consensus 7 ~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (269)
T PRK11831 7 LVDMRGVSFTR----GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIG-GQIAPDHGEILFDGENIPAMSRSRLYT 81 (269)
T ss_pred eEEEeCeEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEEccccChhhHHH
Confidence 56677665544 334566777765 9999999999999999999999 999999999998754311 0 00
Q ss_pred hcCcceeeeccccCC--ccccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 246 ESGRTSSVGNDILGF--DSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 246 ~~g~v~~~~~~~~~~--~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
....++.++|....+ .++.+++..... ...... ....++.++++.+|+.+..++.++.|||++.
T Consensus 82 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~ 149 (269)
T PRK11831 82 VRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAP---LLHSTVMMKLEAVGLRGAAKLMPSELSGGMA 149 (269)
T ss_pred HhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHH---HHHHHHHHHHHHcCChhhhhCChhhCCHHHH
Confidence 112344444443222 234444433211 111111 1223445566677778888999999999654
No 133
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.48 E-value=1.7e-14 Score=126.88 Aligned_cols=117 Identities=18% Similarity=0.088 Sum_probs=74.4
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh------hhhcCcceeeeccccCC--
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH------EMESGRTSSVGNDILGF-- 260 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~------~~~~g~v~~~~~~~~~~-- 260 (320)
..+++++++. |++++|+||||||||||+++|+ |+++|++|++.+++.+... ......++.++|+...+
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIY-KEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPD 92 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccC
Confidence 3466777665 9999999999999999999999 9999999999887543110 01122344555543322
Q ss_pred ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 261 DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 261 ~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.+..+++..... ....... ..+++.++++.+|+.+..++.+.+|||++.
T Consensus 93 ~t~~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 142 (214)
T cd03292 93 RNVYENVAFALEVTGVPPRE---IRKRVPAALELVGLSHKHRALPAELSGGEQ 142 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHH---HHHHHHHHHHHcCCHHHhhCChhhcCHHHH
Confidence 234444433211 1112222 223444566667778888899999999653
No 134
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=3.7e-14 Score=129.14 Aligned_cols=134 Identities=15% Similarity=0.074 Sum_probs=81.6
Q ss_pred eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhc
Q psy15138 174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMES 247 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~ 247 (320)
..++++++++.| +...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. .....
T Consensus 10 ~~l~i~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~ 84 (265)
T PRK10575 10 TTFALRNVSFRV----PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLG-RHQPPSEGEILLDAQPLESWSSKAFA 84 (265)
T ss_pred ceEEEeeEEEEE----CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHc-CCCCCCCCEEEECCEehhhCCHHHHh
Confidence 356676665444 334567777775 9999999999999999999999 999999999998764311 11112
Q ss_pred CcceeeeccccCC--ccccceeecCCCCCCCH--HhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 248 GRTSSVGNDILGF--DSVGNVVNKPEHGSLDW--VKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 248 g~v~~~~~~~~~~--~~~~~~v~~~~~~~~~~--~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
..+..++|....+ .+..+++.......... ........++.++++.+++.+..++++..|||++.
T Consensus 85 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 153 (265)
T PRK10575 85 RKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGER 153 (265)
T ss_pred hheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHH
Confidence 2344444442221 23444443321110000 00011123345566667778888999999999653
No 135
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.48 E-value=1.7e-14 Score=127.61 Aligned_cols=117 Identities=14% Similarity=0.083 Sum_probs=74.7
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh----h--hhcCcceeeeccccCC--
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH----E--MESGRTSSVGNDILGF-- 260 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~----~--~~~g~v~~~~~~~~~~-- 260 (320)
...+++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++..... . .....++.++|+...|
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIG-GLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGF 96 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCC
Confidence 4466777765 9999999999999999999999 9999999999987543210 0 1122344444443222
Q ss_pred ccccceeecCCC-C-CCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 261 DSVGNVVNKPEH-G-SLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 261 ~~~~~~v~~~~~-~-~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.+..+++..... . ..... +...++.++++.+|+.+..++.+..||+++.
T Consensus 97 ~t~~~n~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~ 147 (220)
T TIGR02982 97 LTARQNVQMALELQPNLSYQ---EARERARAMLEAVGLGDHLDYYPHNLSGGQK 147 (220)
T ss_pred CCHHHHHHHHHHhccCCCHH---HHHHHHHHHHHHcCChhhhhcChhhCCHHHH
Confidence 233444432211 1 11222 2233455666777778888999999999643
No 136
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.48 E-value=7.8e-14 Score=132.69 Aligned_cols=128 Identities=16% Similarity=0.098 Sum_probs=88.8
Q ss_pred CeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc----hh---hhhcCcceee
Q psy15138 184 GLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH----KH---EMESGRTSSV 253 (320)
Q Consensus 184 ~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~----~~---~~~~g~v~~~ 253 (320)
+.++.|+...+.+++++. |++.||+|.||||||||+++|. |.++|++|+|.+++... +. ..-+|++.|+
T Consensus 9 ~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~-G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQH 87 (501)
T COG3845 9 GITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILF-GLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQH 87 (501)
T ss_pred ccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHh-CcccCCcceEEECCEEeccCCHHHHHHcCCcEEeec
Confidence 345566667777777775 9999999999999999999999 99999999999986541 11 2246777777
Q ss_pred eccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 254 GNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 254 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
|.....|+..+|++.........+....+..+++.++.+..|+.=..+.++..||-+..
T Consensus 88 F~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~q 146 (501)
T COG3845 88 FMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQ 146 (501)
T ss_pred cccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchh
Confidence 76655554444444433322222233334455566666777777778888999986543
No 137
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=1.7e-14 Score=131.72 Aligned_cols=120 Identities=17% Similarity=0.110 Sum_probs=77.1
Q ss_pred ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh----h---hhcCcceeeecccc
Q psy15138 189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH----E---MESGRTSSVGNDIL 258 (320)
Q Consensus 189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~----~---~~~g~v~~~~~~~~ 258 (320)
|+...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+... . .....++.++|...
T Consensus 34 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~-Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 34 TGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCIN-RLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred cCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 4445567777765 9999999999999999999999 9999999999987643110 0 01123445555433
Q ss_pred CC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 259 GF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 259 ~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.+ .++.+++..... ...... +...++.++++.+|+.++.++.+.+|||++.
T Consensus 113 ~~~~~tv~e~l~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~ 166 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQGVPRA---EREERAAEALELVGLEGWEHKYPDELSGGMQ 166 (269)
T ss_pred cCCCCcHHHHHHHHHHhcCCCHH---HHHHHHHHHHHHcCCHhHhhCCcccCCHHHH
Confidence 22 244444433211 111111 1223445566677778888999999999653
No 138
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=1.5e-14 Score=132.39 Aligned_cols=116 Identities=17% Similarity=0.119 Sum_probs=74.1
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhhhcCcceeeeccc---cCCcc
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEMESGRTSSVGNDI---LGFDS 262 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~~~g~v~~~~~~~---~~~~~ 262 (320)
.++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.... .......++.++|+. +...+
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 94 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLN-GLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRT 94 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccch
Confidence 466777765 9999999999999999999999 999999999998854321 011122334444432 21124
Q ss_pred ccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 263 VGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 263 ~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
..+++..... ........ .+++.++++.+|+.++.++.+..|||++.
T Consensus 95 v~enl~~~~~~~~~~~~~~---~~~~~~~l~~~gl~~~~~~~~~~LS~G~~ 142 (274)
T PRK13644 95 VEEDLAFGPENLCLPPIEI---RKRVDRALAEIGLEKYRHRSPKTLSGGQG 142 (274)
T ss_pred HHHHHHhhHHHcCCCHHHH---HHHHHHHHHHCCCHHHhcCCcccCCHHHH
Confidence 4444433211 11222222 23344566667778888999999999653
No 139
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.48 E-value=2.6e-14 Score=124.95 Aligned_cols=122 Identities=13% Similarity=0.102 Sum_probs=88.6
Q ss_pred CeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcCcceeeecccc
Q psy15138 184 GLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESGRTSSVGNDIL 258 (320)
Q Consensus 184 ~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g~v~~~~~~~~ 258 (320)
++++.|+...++++++|. |++++++|||||||||++|+|. |+++|++|+|.+++..... ..++||.+-....+.
T Consensus 7 ~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmIL-glle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~ 85 (300)
T COG4152 7 GVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMIL-GLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYP 85 (300)
T ss_pred cchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHh-ccCCccCceEEEcCcchhhhhhhhcccChhhhccCc
Confidence 345567778889999886 9999999999999999999999 9999999999998765322 234666665443333
Q ss_pred CCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccC
Q psy15138 259 GFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTG 309 (320)
Q Consensus 259 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG 309 (320)
-+.......+++....++..++.++...+++.+++ ..+..+.+.+||-
T Consensus 86 k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i---~~~~~~kIk~LSK 133 (300)
T COG4152 86 KMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEI---VGKKTKKIKELSK 133 (300)
T ss_pred cCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccc---cccccchHHHhhh
Confidence 33333444455555677777777777776666665 5556677778876
No 140
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=2.2e-14 Score=132.16 Aligned_cols=133 Identities=17% Similarity=0.135 Sum_probs=80.5
Q ss_pred eeeeecCCCeeeeec-ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-------hh
Q psy15138 176 LRQRKLDNGLTGQYL-LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-------HE 244 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~-~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-------~~ 244 (320)
++++++++.|..... .+.+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.... ..
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFN-ALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEECCEECccccccchHH
Confidence 445555544431100 13467777765 9999999999999999999999 999999999999865321 01
Q ss_pred hhcCcceeeeccc---cCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138 245 MESGRTSSVGNDI---LGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP 312 (320)
Q Consensus 245 ~~~g~v~~~~~~~---~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~ 312 (320)
.....++.++|+. +...++.+++..+.. ........ ..++.++++.+|+. ++.++.+..|||++.
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~---~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEA---KEKALKWLKKVGLSEDLISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHcCCChhHhhCCcccCCHHHH
Confidence 1122334444432 111244444443211 11222222 23445566667776 678999999999654
No 141
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.48 E-value=4.3e-14 Score=137.51 Aligned_cols=88 Identities=26% Similarity=0.299 Sum_probs=76.8
Q ss_pred CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-------hhHHHHHHHHHHcCCC-cEEEEeCCCCC--
Q psy15138 12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-------GMTKEHLGLALALSVP-VFVVVTKIDMC-- 79 (320)
Q Consensus 12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-------~~t~~~l~l~~~l~i~-~~v~lnk~Dl~-- 79 (320)
....+.|||+|||++|+ |+.|++.+|.++| ||+|++|++ +||+||+.+|+++++| +++++||+|..
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ail--VVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAIL--VVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTV 160 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEE--EEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 34568999999999999 9999999999999 999999984 8999999999999997 56899999953
Q ss_pred --ChhHHHHHHHHHHHhhcCCCcc
Q psy15138 80 --PPNVLQDTLKLLVRILKSPGCR 101 (320)
Q Consensus 80 --~~~~le~~l~~~~~~l~~~~~~ 101 (320)
+++++++.++++...+...++.
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~ 184 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYN 184 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCC
Confidence 5678888889998888765554
No 142
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=2.2e-14 Score=128.86 Aligned_cols=117 Identities=13% Similarity=0.087 Sum_probs=73.5
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCcceeeeccccCC--ccc
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGRTSSVGNDILGF--DSV 263 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~v~~~~~~~~~~--~~~ 263 (320)
..+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. .......++.++|....+ .++
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMIN-RLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTV 92 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcH
Confidence 3466666665 9999999999999999999999 999999999998754311 111123344555543222 244
Q ss_pred cceeecCC-CCCCCHHhHHHHHHHHHHHhcccCCcc--ccccccccccCCCC
Q psy15138 264 GNVVNKPE-HGSLDWVKICERSAKVITFIDLAGHER--YLKTTVFGMTGHVP 312 (320)
Q Consensus 264 ~~~v~~~~-~~~~~~~~~~~~~~~~l~~l~l~gl~~--~~~~~~~~LSG~~~ 312 (320)
.+++.... ........ ..+++.++++.+|+.+ +.++.+..|||++.
T Consensus 93 ~e~l~~~~~~~~~~~~~---~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~ 141 (242)
T cd03295 93 EENIALVPKLLKWPKEK---IRERADELLALVGLDPAEFADRYPHELSGGQQ 141 (242)
T ss_pred HHHHHHHHHHcCCCHHH---HHHHHHHHHHHcCCCcHHHHhcChhhCCHHHH
Confidence 44443321 11112222 2233445556666664 78899999999654
No 143
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.48 E-value=2.4e-14 Score=134.23 Aligned_cols=137 Identities=18% Similarity=0.169 Sum_probs=83.3
Q ss_pred eeeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCC---Cceeeeccccch----
Q psy15138 173 CVLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNG---RGHARQKLFRHK---- 242 (320)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~---~G~i~~~~~~~~---- 242 (320)
..++++++++..|....+...++++++|. |++++|+|+||||||||+++|+ |+++|. +|+|.+++.+..
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~-Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALM-GLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHH-cCCCCCCCCCeEEEECCEECCcCCH
Confidence 34677777765553221234577777776 9999999999999999999999 999996 999998865411
Q ss_pred hh---hhcCcceeeeccccC-C---ccccceeecCC--CCCCCHHhHHHHHHHHHHHhcccCCc---cccccccccccCC
Q psy15138 243 HE---MESGRTSSVGNDILG-F---DSVGNVVNKPE--HGSLDWVKICERSAKVITFIDLAGHE---RYLKTTVFGMTGH 310 (320)
Q Consensus 243 ~~---~~~g~v~~~~~~~~~-~---~~~~~~v~~~~--~~~~~~~~~~~~~~~~l~~l~l~gl~---~~~~~~~~~LSG~ 310 (320)
.. .+...++.++|+... + .+..+++.... .......+.. .++.++++.+|+. +..+++|++|||+
T Consensus 89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~---~~~~~~L~~vgL~~~~~~~~~~p~~LSgG 165 (330)
T PRK09473 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAF---EESVRMLDAVKMPEARKRMKMYPHEFSGG 165 (330)
T ss_pred HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH---HHHHHHHHHcCCCChHHHhcCCcccCCHH
Confidence 11 112346666666421 2 22233332211 1112222222 3344445555554 3567899999997
Q ss_pred CCC
Q psy15138 311 VPD 313 (320)
Q Consensus 311 ~~~ 313 (320)
+..
T Consensus 166 ~~Q 168 (330)
T PRK09473 166 MRQ 168 (330)
T ss_pred HHH
Confidence 643
No 144
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=1.5e-14 Score=132.50 Aligned_cols=116 Identities=21% Similarity=0.100 Sum_probs=74.2
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-----hhhhcCcceeeeccc---cCCc
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-----HEMESGRTSSVGNDI---LGFD 261 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-----~~~~~g~v~~~~~~~---~~~~ 261 (320)
.+++++++. |++++|+||||||||||+++|+ |+++|.+|+|.+++.... .......++.++|+. +...
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFN-GILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP 94 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccc
Confidence 456666665 9999999999999999999999 999999999998764321 011122344444432 1112
Q ss_pred cccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 262 SVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 262 ~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
++.+++..... ....... ...++.++++.+|+.++.++.+.+|||++.
T Consensus 95 tv~e~i~~~~~~~~~~~~~---~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~ 143 (275)
T PRK13639 95 TVEEDVAFGPLNLGLSKEE---VEKRVKEALKAVGMEGFENKPPHHLSGGQK 143 (275)
T ss_pred cHHHHHHHHHHHcCCCHHH---HHHHHHHHHHHCCCchhhcCChhhCCHHHH
Confidence 44444433211 1112212 223455666677778888999999999654
No 145
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.47 E-value=5.2e-14 Score=128.15 Aligned_cols=132 Identities=18% Similarity=0.142 Sum_probs=80.5
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g 248 (320)
.++++++.+.| +...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. ......
T Consensus 7 ~l~i~~l~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~-G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (265)
T PRK10253 7 RLRGEQLTLGY----GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS-RLMTPAHGHVWLDGEHIQHYASKEVAR 81 (265)
T ss_pred EEEEEEEEEEE----CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHc-CCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 45555554444 334567777775 9999999999999999999999 999999999998754311 111112
Q ss_pred cceeeeccccCC--ccccceeecCCCCC---CCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 249 RTSSVGNDILGF--DSVGNVVNKPEHGS---LDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 249 ~v~~~~~~~~~~--~~~~~~v~~~~~~~---~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.++.++|+...+ .+..+++....... ..... .....++.++++.+|+.+..++.+..|||++.
T Consensus 82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~ 149 (265)
T PRK10253 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWR-KEDEEAVTKAMQATGITHLADQSVDTLSGGQR 149 (265)
T ss_pred heEEeeccCcCCCCCcHHHHHHhCcccccccccCCC-HHHHHHHHHHHHHcCCHHHhcCCcccCChHHH
Confidence 344444443222 23334443321110 00000 11223344566667778888999999999653
No 146
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.47 E-value=1.9e-14 Score=136.97 Aligned_cols=120 Identities=18% Similarity=0.120 Sum_probs=80.2
Q ss_pred ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc----cc----h---hhhhcCcceeee
Q psy15138 189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF----RH----K---HEMESGRTSSVG 254 (320)
Q Consensus 189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~----~~----~---~~~~~g~v~~~~ 254 (320)
++....+++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++. +. . ...+...++.++
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~-Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVN-GLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHh-CCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 3445556666665 9999999999999999999999 999999999999763 10 0 111123455666
Q ss_pred ccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 255 NDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 255 ~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
|....| .++.+++.++.. ....+.. ...++.++++.+|+.++.++++.+|||++.
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~g~~~~~---~~~~a~e~le~vgL~~~~~~~~~~LSgGq~ 170 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQGMPEAE---RRKRVDEQLELVGLAQWADKKPGELSGGMQ 170 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence 654433 245555554321 1222222 234455667777888889999999999653
No 147
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.47 E-value=1.6e-14 Score=126.63 Aligned_cols=117 Identities=13% Similarity=0.091 Sum_probs=74.1
Q ss_pred ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcceeeeccccCC--cc
Q psy15138 189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTSSVGNDILGF--DS 262 (320)
Q Consensus 189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~~~--~~ 262 (320)
|+...++++++|. |++++|+||||||||||+++|+ |+++|.+|+|.+++.+... ......++.++|+...+ .+
T Consensus 10 ~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (208)
T cd03268 10 YGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIIL-GLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLT 88 (208)
T ss_pred ECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh-CCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCc
Confidence 3334577777775 9999999999999999999999 9999999999997643211 11122344444443222 23
Q ss_pred ccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 263 VGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 263 ~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
+.+++....... .. ...++.++++.+++.+..++.+..|||++.
T Consensus 89 v~e~l~~~~~~~-~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 132 (208)
T cd03268 89 ARENLRLLARLL-GI-----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMK 132 (208)
T ss_pred HHHHHHHHHHhc-CC-----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHH
Confidence 444433221100 00 112344455666777888899999999654
No 148
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.47 E-value=9.5e-15 Score=124.32 Aligned_cols=117 Identities=15% Similarity=0.089 Sum_probs=78.2
Q ss_pred ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcCcceeeeccccCC--ccc
Q psy15138 191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESGRTSSVGNDILGF--DSV 263 (320)
Q Consensus 191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g~v~~~~~~~~~~--~~~ 263 (320)
..+++.+++|. |++++|+|||||||||+||+|+ +++.|++|.+.+++.+... ..-++.++-.+.+.-.+ .+.
T Consensus 14 ~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmia-tlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 14 KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIA-TLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHH-HhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhH
Confidence 34578888886 9999999999999999999999 9999999999998665221 11123333333221111 233
Q ss_pred ccee-ecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 264 GNVV-NKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 264 ~~~v-~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
.+++ +++....+...+++++.+++ .+.+++.+++++...++|-+.
T Consensus 93 rEnl~~Fa~L~~l~~~~~kari~~l---~k~l~l~~~~~rRv~~~S~G~ 138 (245)
T COG4555 93 RENLKYFARLNGLSRKEIKARIAEL---SKRLQLLEYLDRRVGEFSTGM 138 (245)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHH---HHHhChHHHHHHHHhhhchhh
Confidence 3333 44444555555555555544 445566889999999999753
No 149
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.47 E-value=2.8e-14 Score=119.79 Aligned_cols=118 Identities=16% Similarity=0.145 Sum_probs=80.9
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc------hhhhhcCcceeeeccccC-Cc
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH------KHEMESGRTSSVGNDILG-FD 261 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~------~~~~~~g~v~~~~~~~~~-~~ 261 (320)
..+++.++|. |+.+||+|.||||||||.|+|+ |..+|++|+|.+++... .+...+.+++|++...+. -.
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMla-Gmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl 104 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLA-GMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRL 104 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHh-cccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhh
Confidence 4567888886 9999999999999999999999 99999999999985431 122335566665543321 11
Q ss_pred cccceeecCCCCCCCHHhHHHHHHHHHHHhcccCC-ccccccccccccCCC
Q psy15138 262 SVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGH-ERYLKTTVFGMTGHV 311 (320)
Q Consensus 262 ~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl-~~~~~~~~~~LSG~~ 311 (320)
..+..+..+......+.. .++.+++.+-+.++|+ .+..+.+|..||-++
T Consensus 105 ~iGqiLd~PL~l~T~~~~-~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~Q 154 (267)
T COG4167 105 RIGQILDFPLRLNTDLEP-EQRRKQIFETLRMVGLLPDHANYYPHMLAPGQ 154 (267)
T ss_pred hhhhHhcchhhhcccCCh-HHHHHHHHHHHHHhccCccccccchhhcCchh
Confidence 234445555444333322 3455667777777776 577888898888754
No 150
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.47 E-value=4.7e-14 Score=127.93 Aligned_cols=129 Identities=23% Similarity=0.187 Sum_probs=78.8
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~ 249 (320)
++++++.+.| +...++++++|. |++++|+||||||||||+++|+ |+++|.+|+|.+++.... .......
T Consensus 3 l~~~~l~~~~----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~-G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (258)
T PRK13548 3 LEARNLSVRL----GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-GELSPDSGEVRLNGRPLADWSPAELARR 77 (258)
T ss_pred EEEEeEEEEe----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCEEEECCEEcccCCHHHhhhh
Confidence 4455444333 334567777775 9999999999999999999999 999999999998754311 1111122
Q ss_pred ceeeeccccC-C-ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 250 TSSVGNDILG-F-DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 250 v~~~~~~~~~-~-~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
++.++|+... + .++.+++..... ....... ...++.++++.+|+.+..++.+..|||++.
T Consensus 78 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~ 140 (258)
T PRK13548 78 RAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAE---DDALVAAALAQVDLAHLAGRDYPQLSGGEQ 140 (258)
T ss_pred eEEEccCCcCCCCCCHHHHHHhhhcccCCCcHH---HHHHHHHHHHHcCCHhHhcCCcccCCHHHH
Confidence 3344443222 1 233444433211 1111111 123344566667778888999999999654
No 151
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=5e-14 Score=126.38 Aligned_cols=130 Identities=16% Similarity=0.106 Sum_probs=80.4
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhhhc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEMES 247 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~~~ 247 (320)
.++++++++.| +...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.... .....
T Consensus 3 ~l~~~~l~~~~----~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (241)
T PRK10895 3 TLTAKNLAKAY----KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVV-GIVPRDAGNIIIDDEDISLLPLHARAR 77 (241)
T ss_pred eEEEeCcEEEe----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 34555555444 334567777775 9999999999999999999999 999999999998754311 11112
Q ss_pred CcceeeeccccCC--ccccceeecCCC-C-CCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 248 GRTSSVGNDILGF--DSVGNVVNKPEH-G-SLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 248 g~v~~~~~~~~~~--~~~~~~v~~~~~-~-~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
..++.++|....+ .++.+++..... . ...... ...++.++++.+|+.+..++.+..|||++.
T Consensus 78 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 143 (241)
T PRK10895 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQ---REDRANELMEEFHIEHLRDSMGQSLSGGER 143 (241)
T ss_pred hCeEEeccCCcccccCcHHHHHhhhhhcccccCHHH---HHHHHHHHHHHcCCHHHhhcchhhCCHHHH
Confidence 2344445443222 234444433211 1 111111 223344556666777778899999999653
No 152
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.47 E-value=3.4e-14 Score=132.71 Aligned_cols=135 Identities=17% Similarity=0.166 Sum_probs=85.2
Q ss_pred eeeeeeecCCCeeeee-cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-------
Q psy15138 174 VLLRQRKLDNGLTGQY-LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK------- 242 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~------- 242 (320)
.+++++++++.|.... ....+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+..
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~-Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFN-GLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCeEEECCEEccccccccc
Confidence 4678888777664211 113467777775 9999999999999999999999 999999999998753210
Q ss_pred ------------hhhhcCcceeeeccc--cCC-ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCc-cccccccc
Q psy15138 243 ------------HEMESGRTSSVGNDI--LGF-DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHE-RYLKTTVF 305 (320)
Q Consensus 243 ------------~~~~~g~v~~~~~~~--~~~-~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~ 305 (320)
.......++.++|+. ..| .++.+++.++.. ......... .++.++++.+|+. .+.++.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~---~~~~~~l~~~gL~~~~~~~~~~ 175 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK---KLAKFYLNKMGLDDSYLERSPF 175 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHH---HHHHHHHHHcCCChhHhcCCcc
Confidence 111123344444442 122 355555544321 122222222 3344556666775 57889999
Q ss_pred cccCCCC
Q psy15138 306 GMTGHVP 312 (320)
Q Consensus 306 ~LSG~~~ 312 (320)
+|||++.
T Consensus 176 ~LSgGqk 182 (320)
T PRK13631 176 GLSGGQK 182 (320)
T ss_pred cCCHHHH
Confidence 9999654
No 153
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.47 E-value=2.5e-14 Score=125.16 Aligned_cols=118 Identities=13% Similarity=-0.003 Sum_probs=72.8
Q ss_pred ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch--hhhhcCcceeeeccccCC--c
Q psy15138 189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK--HEMESGRTSSVGNDILGF--D 261 (320)
Q Consensus 189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~--~~~~~g~v~~~~~~~~~~--~ 261 (320)
|+...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.... .......++.+++....+ .
T Consensus 11 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~-G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (204)
T PRK13538 11 RDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILA-GLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTEL 89 (204)
T ss_pred ECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCC
Confidence 3334567777775 9999999999999999999999 999999999998754311 011112233333332211 1
Q ss_pred cccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 262 SVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 262 ~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
+..+++....... .. . ...++.++++.+|+.++.++.+..|||++.
T Consensus 90 tv~e~l~~~~~~~-~~-~---~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~ 135 (204)
T PRK13538 90 TALENLRFYQRLH-GP-G---DDEALWEALAQVGLAGFEDVPVRQLSAGQQ 135 (204)
T ss_pred cHHHHHHHHHHhc-Cc-c---HHHHHHHHHHHcCCHHHhhCChhhcCHHHH
Confidence 3333332221100 00 1 123344566667777778899999999653
No 154
>KOG1143|consensus
Probab=99.47 E-value=7.4e-14 Score=128.14 Aligned_cols=91 Identities=35% Similarity=0.547 Sum_probs=84.0
Q ss_pred CCCceEEEeCCCcchhh-----ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHH
Q psy15138 12 AENAASVFETRIHERDD-----DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQD 86 (320)
Q Consensus 12 ~~~~~~~~d~pgh~~~~-----~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~ 86 (320)
++.-++|||..||.+|. .++ ..-||+++| ||+|+.|+.+.|||||.|++||++|.+++++|+|++++..++.
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLt-gY~Ph~A~L--vVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~~~~~ 323 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLT-GYTPHFACL--VVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQGLKK 323 (591)
T ss_pred hcceEEEeecccchhhheeeeeecc-cCCCceEEE--EEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccchhHHH
Confidence 34569999999999999 444 556999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCccccCc
Q psy15138 87 TLKLLVRILKSPGCRKVPV 105 (320)
Q Consensus 87 ~l~~~~~~l~~~~~~~i~~ 105 (320)
..+++...+...+|++.|.
T Consensus 324 tv~~l~nll~~~Gc~kvp~ 342 (591)
T KOG1143|consen 324 TVKDLSNLLAKAGCTKVPK 342 (591)
T ss_pred HHHHHHHHHhhcCccccce
Confidence 9999999999999999875
No 155
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.47 E-value=3.2e-14 Score=133.26 Aligned_cols=135 Identities=21% Similarity=0.216 Sum_probs=84.9
Q ss_pred eeeeeeecCCCeeeee------cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch--
Q psy15138 174 VLLRQRKLDNGLTGQY------LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-- 242 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~------~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-- 242 (320)
.++++++++..|.... ....++++++|. |++++|+|+||||||||+++|+ |+++|.+|+|.+++.+..
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~-gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLT-MIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHH-cCCCCCCcEEEECCEEcCcC
Confidence 3566776665553211 124577888776 9999999999999999999999 999999999998764311
Q ss_pred ----hhhhcCcceeeeccccC-C---ccccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCC
Q psy15138 243 ----HEMESGRTSSVGNDILG-F---DSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHV 311 (320)
Q Consensus 243 ----~~~~~g~v~~~~~~~~~-~---~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~ 311 (320)
.....+.++.++|+... + .+..+++..... ......+ ..+++.++++.+|+. +.++++|++|||++
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq 159 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAE---RREKALAMMAKVGLRPEHYDRYPHMFSGGQ 159 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHH---HHHHHHHHHHHCCCChHHhcCCCccCCHHH
Confidence 11123456666666421 2 223333322111 1122222 234455666677775 47899999999975
Q ss_pred C
Q psy15138 312 P 312 (320)
Q Consensus 312 ~ 312 (320)
.
T Consensus 160 ~ 160 (327)
T PRK11308 160 R 160 (327)
T ss_pred H
Confidence 4
No 156
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.47 E-value=2.3e-14 Score=126.81 Aligned_cols=117 Identities=19% Similarity=0.084 Sum_probs=70.5
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---h-hhhcCcceeeeccccCC--cc
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---H-EMESGRTSSVGNDILGF--DS 262 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~-~~~~g~v~~~~~~~~~~--~~ 262 (320)
..++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. . ......++.++|....+ .+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIM-GLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELT 91 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCc
Confidence 4566776665 9999999999999999999999 999999999998754311 1 11112344444443222 23
Q ss_pred ccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 263 VGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 263 ~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
..+++....... ......+...++++.++ ++.+..++.+..|||++.
T Consensus 92 ~~~~l~~~~~~~-~~~~~~~~~~~~l~~~~--~l~~~~~~~~~~LS~G~~ 138 (222)
T cd03224 92 VEENLLLGAYAR-RRAKRKARLERVYELFP--RLKERRKQLAGTLSGGEQ 138 (222)
T ss_pred HHHHHHHHhhhc-CchhHHHHHHHHHHHHH--hhhhhhhCchhhCCHHHH
Confidence 444443322111 11111222333444332 346677899999999653
No 157
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.47 E-value=1.2e-13 Score=138.53 Aligned_cols=111 Identities=24% Similarity=0.283 Sum_probs=88.1
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCChhHHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCPPNVLQDTLKL 90 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~~~~le~~l~~ 90 (320)
..+.|+|+|||++|+ |+.++.++|.+++ ||++++|++++|+||+.+++.+++| ++|++||+|+++.++++...++
T Consensus 50 ~~v~~iDtPGhe~f~~~~~~g~~~aD~aIL--VVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~e 127 (581)
T TIGR00475 50 YRLGFIDVPGHEKFISNAIAGGGGIDAALL--VVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMF 127 (581)
T ss_pred EEEEEEECCCHHHHHHHHHhhhccCCEEEE--EEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 468899999999999 9999999999999 9999999999999999999999998 9999999999998888877777
Q ss_pred HHHhhcCCCcc-ccCccccccCCchhHHHHHHHHHHHH
Q psy15138 91 LVRILKSPGCR-KVPVMNCLISPTEEQFDLLQKKIKSL 127 (320)
Q Consensus 91 ~~~~l~~~~~~-~i~~kl~~~~gnyd~~~~l~~q~~~~ 127 (320)
+...+....+. ..+. +-.+.-+.+.++++...+...
T Consensus 128 i~~~l~~~~~~~~~~i-i~vSA~tG~GI~eL~~~L~~l 164 (581)
T TIGR00475 128 MKQILNSYIFLKNAKI-FKTSAKTGQGIGELKKELKNL 164 (581)
T ss_pred HHHHHHHhCCCCCCcE-EEEeCCCCCCchhHHHHHHHH
Confidence 77776554332 2221 112335555666666655443
No 158
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.47 E-value=4.3e-14 Score=127.44 Aligned_cols=129 Identities=14% Similarity=0.057 Sum_probs=79.7
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----------
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---------- 242 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---------- 242 (320)
++++++++.| +...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+..
T Consensus 4 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (250)
T PRK11264 4 IEVKNLVKKF----HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCIN-LLEQPEAGTIRVGDITIDTARSLSQQKG 78 (250)
T ss_pred EEEeceEEEE----CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCeEEEECCEEccccccccchhh
Confidence 4555554443 334567777775 9999999999999999999999 999999999988754311
Q ss_pred -hhhhcCcceeeeccccCC--ccccceeecCC--CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 243 -HEMESGRTSSVGNDILGF--DSVGNVVNKPE--HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 -~~~~~g~v~~~~~~~~~~--~~~~~~v~~~~--~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.......++.++|....+ .+..+++.... ........ ..+++.++++.+|+.+..++.+++|||++.
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~ 150 (250)
T PRK11264 79 LIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEE---ATARARELLAKVGLAGKETSYPRRLSGGQQ 150 (250)
T ss_pred HHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCCcchhhCChhhCChHHH
Confidence 011122344444443222 23444443211 11111111 223344556666777778899999999754
No 159
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.47 E-value=6.2e-14 Score=125.81 Aligned_cols=132 Identities=13% Similarity=0.040 Sum_probs=80.7
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hh-hhcC
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HE-MESG 248 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~-~~~g 248 (320)
++++++.+.| +...++++++|. |++++|+||||||||||+++|+ |+++|++|++.+++.+.. .. ....
T Consensus 3 i~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~-G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (242)
T TIGR03411 3 LYLEGLSVSF----DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVIT-GKTRPDEGSVLFGGTDLTGLPEHQIARA 77 (242)
T ss_pred EEEEeeEEEc----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCCeEEECCeecCCCCHHHHHhc
Confidence 4555554444 334567777775 9999999999999999999999 999999999998864311 11 1112
Q ss_pred cceeeeccccCC--ccccceeecCCCCC------CCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 249 RTSSVGNDILGF--DSVGNVVNKPEHGS------LDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 249 ~v~~~~~~~~~~--~~~~~~v~~~~~~~------~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.++..+|....+ .++.+++....... .......+...++.++++.+|+.+..++.+..|||++.
T Consensus 78 ~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~ 149 (242)
T TIGR03411 78 GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQK 149 (242)
T ss_pred CeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence 344444443322 24444443321100 00000012233455666677778888999999999653
No 160
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.47 E-value=3.4e-14 Score=130.58 Aligned_cols=131 Identities=18% Similarity=0.067 Sum_probs=83.2
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-----hhhh
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-----HEME 246 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-----~~~~ 246 (320)
+++++++++.|.. ...++++++|. |++++|+||||||||||+++|+ |+++|.+|+|.+++.+.. ....
T Consensus 5 ~l~~~~l~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~-Gl~~p~~G~i~i~g~~~~~~~~~~~~~ 80 (283)
T PRK13636 5 ILKVEELNYNYSD---GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLN-GILKPSSGRILFDGKPIDYSRKGLMKL 80 (283)
T ss_pred eEEEEeEEEEeCC---CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCccEEEECCEECCCCcchHHHH
Confidence 5667766655531 23467777765 9999999999999999999999 999999999999865421 1111
Q ss_pred cCcceeeeccc---cCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 247 SGRTSSVGNDI---LGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 247 ~g~v~~~~~~~---~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
...++.++|+. +...+..+++..... ........ ..++.++++.+|+.++.++.+..|||++.
T Consensus 81 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~---~~~~~~~l~~~gL~~~~~~~~~~LS~G~~ 147 (283)
T PRK13636 81 RESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEV---RKRVDNALKRTGIEHLKDKPTHCLSFGQK 147 (283)
T ss_pred HhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHH---HHHHHHHHHHCCChhhhhCCcccCCHHHH
Confidence 23344444432 212344444433211 11222222 23345566667778888999999999653
No 161
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.47 E-value=3e-14 Score=136.48 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=76.5
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hh---hhcCcceeeeccccCC--
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HE---MESGRTSSVGNDILGF-- 260 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~---~~~g~v~~~~~~~~~~-- 260 (320)
.++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. .. .....+++++|+...|
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~-Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~ 120 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLN-RLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPH 120 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHH-cCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCC
Confidence 346666665 9999999999999999999999 999999999998764311 00 1112344555543333
Q ss_pred ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 261 DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 261 ~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.++.+++.+... ...... +..+++.++++.+|+.++.+++|.+|||++.
T Consensus 121 ~Tv~enl~~~~~~~~~~~~---~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~ 170 (400)
T PRK10070 121 MTVLDNTAFGMELAGINAE---ERREKALDALRQVGLENYAHSYPDELSGGMR 170 (400)
T ss_pred CCHHHHHHHHHHhcCCCHH---HHHHHHHHHHHHcCCChhhhcCcccCCHHHH
Confidence 245555544321 112222 2234455667777888889999999999654
No 162
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.47 E-value=4.6e-14 Score=139.72 Aligned_cols=130 Identities=17% Similarity=0.134 Sum_probs=82.5
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhhhc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEMES 247 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~~~ 247 (320)
+++++++++.| +...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. .....
T Consensus 4 ~i~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~-G~~~p~~G~i~~~g~~~~~~~~~~~~~ 78 (501)
T PRK10762 4 LLQLKGIDKAF----PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLT-GIYTRDAGSILYLGKEVTFNGPKSSQE 78 (501)
T ss_pred eEEEeeeEEEe----CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 35666555444 334577777775 9999999999999999999999 999999999998754311 11111
Q ss_pred CcceeeeccccCC--ccccceeecCCCC-----CCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 248 GRTSSVGNDILGF--DSVGNVVNKPEHG-----SLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 248 g~v~~~~~~~~~~--~~~~~~v~~~~~~-----~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
..++.++|....+ .++.+++..+... ...+... ..++.++++.+|+.+..++++..|||++.
T Consensus 79 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 147 (501)
T PRK10762 79 AGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKM---YAEADKLLARLNLRFSSDKLVGELSIGEQ 147 (501)
T ss_pred CCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHH---HHHHHHHHHHcCCCCCccCchhhCCHHHH
Confidence 2344444443222 2445555443211 1122222 23344566667778888999999999653
No 163
>PRK01889 GTPase RsgA; Reviewed
Probab=99.47 E-value=3.5e-13 Score=127.59 Aligned_cols=121 Identities=24% Similarity=0.308 Sum_probs=82.9
Q ss_pred CCccchhhhccceecCCCCch-hHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHHHHhhcCCCccccCcccccc-
Q psy15138 33 ASPADHSMLQSKVGANAGIVG-MTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNCLI- 110 (320)
Q Consensus 33 ~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~~~~l~~~~~~~i~~kl~~~- 110 (320)
++++|++++ |++++.++.+ ...+.|..|...++|++||+||+||.+. .++..+.+... ..++. +...
T Consensus 110 aANvD~vli--V~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~--~~~~~~~~~~~--~~g~~-----Vi~vS 178 (356)
T PRK01889 110 AANVDTVFI--VCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED--AEEKIAEVEAL--APGVP-----VLAVS 178 (356)
T ss_pred EEeCCEEEE--EEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC--HHHHHHHHHHh--CCCCc-----EEEEE
Confidence 589999988 9999877776 5556889999999999999999999764 22233334332 11121 1111
Q ss_pred CCchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeeeeec
Q psy15138 111 SPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQYL 190 (320)
Q Consensus 111 ~gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (320)
..+.+..++++..+
T Consensus 179 a~~g~gl~~L~~~L------------------------------------------------------------------ 192 (356)
T PRK01889 179 ALDGEGLDVLAAWL------------------------------------------------------------------ 192 (356)
T ss_pred CCCCccHHHHHHHh------------------------------------------------------------------
Confidence 12222222221111
Q ss_pred ceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138 191 LRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR 240 (320)
Q Consensus 191 ~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~ 240 (320)
..|++++|+|+||+|||||++.|. |...+..|.+.....+
T Consensus 193 ---------~~g~~~~lvG~sgvGKStLin~L~-g~~~~~~G~i~~~~~~ 232 (356)
T PRK01889 193 ---------SGGKTVALLGSSGVGKSTLVNALL-GEEVQKTGAVREDDSK 232 (356)
T ss_pred ---------hcCCEEEEECCCCccHHHHHHHHH-HhcccceeeEEECCCC
Confidence 025668999999999999999999 9999999999886543
No 164
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.47 E-value=5.5e-14 Score=127.22 Aligned_cols=131 Identities=17% Similarity=0.124 Sum_probs=79.7
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~ 249 (320)
++++++++.| +...++++++|. |++++|+||||||||||+++|+ |+++|.+|++.+++.... .......
T Consensus 3 l~~~~l~~~~----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (255)
T PRK11231 3 LRTENLTVGY----GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQSGTVFLGDKPISMLSSRQLARR 77 (255)
T ss_pred EEEEeEEEEE----CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHh-CCcCCCCcEEEECCEEhHHCCHHHHhhh
Confidence 4455544433 334567777765 9999999999999999999999 999999999998764311 1111122
Q ss_pred ceeeeccccCC--ccccceeecCCCC---CCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 250 TSSVGNDILGF--DSVGNVVNKPEHG---SLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 250 v~~~~~~~~~~--~~~~~~v~~~~~~---~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
++.++|+...+ .+..+++..+... ...... .....++.++++.+|+.++.++.+..|||++.
T Consensus 78 i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 144 (255)
T PRK11231 78 LALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLS-AEDNARVNQAMEQTRINHLADRRLTDLSGGQR 144 (255)
T ss_pred eEEecccCCCCCCccHHHHHHhccchhhhhccCCC-HHHHHHHHHHHHHcCCHHHHcCCcccCCHHHH
Confidence 34444443222 1344444332110 001000 11223445566667778888999999999654
No 165
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.47 E-value=3.6e-14 Score=132.93 Aligned_cols=135 Identities=15% Similarity=0.152 Sum_probs=80.3
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC----CCceeeeccccch-----
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN----GRGHARQKLFRHK----- 242 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~----~~G~i~~~~~~~~----- 242 (320)
++++++++..|........++++++|. |++++|+|+||||||||+++|+ |+++| ++|+|.+++.+..
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~-Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIM-GLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHH-cCCCCCCCCcceEEEECCEECCcCCHH
Confidence 456666655443211114578888876 9999999999999999999999 99974 7899998865411
Q ss_pred --hhhhcCcceeeeccccC-Cc---cccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCCc---cccccccccccCCC
Q psy15138 243 --HEMESGRTSSVGNDILG-FD---SVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGHE---RYLKTTVFGMTGHV 311 (320)
Q Consensus 243 --~~~~~g~v~~~~~~~~~-~~---~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~---~~~~~~~~~LSG~~ 311 (320)
...+...++.++|+... +. ++++.+..... ......+. .+++.++++.+|+. ...+++|++|||++
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~---~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq 158 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTR---RQRAIDLLNQVGIPDPASRLDVYPHQLSGGM 158 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHCCCCChHHHHhCCchhCCHHH
Confidence 11111245566665421 21 22222221111 11222222 23344555555654 46789999999976
Q ss_pred CC
Q psy15138 312 PD 313 (320)
Q Consensus 312 ~~ 313 (320)
..
T Consensus 159 ~Q 160 (326)
T PRK11022 159 SQ 160 (326)
T ss_pred HH
Confidence 43
No 166
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.46 E-value=4.9e-14 Score=125.41 Aligned_cols=100 Identities=16% Similarity=0.123 Sum_probs=75.5
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc----------chhhhhcCcceeeeccccCCccccceeecCCC
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR----------HKHEMESGRTSSVGNDILGFDSVGNVVNKPEH 272 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~----------~~~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~ 272 (320)
-.+||.|+||||||||+|+|+ |+.+|+.|+|.+++.- ..+..++||++|..+.+..+ ++.-|+.++..
T Consensus 25 GvTAlFG~SGsGKTslin~Ia-GL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~-tVrgNL~YG~~ 102 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIA-GLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY-TVRGNLRYGMW 102 (352)
T ss_pred ceEEEecCCCCChhhHHHHHh-ccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccce-EEecchhhhhc
Confidence 568999999999999999999 9999999999887432 34556678888877765544 45555555443
Q ss_pred CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 273 GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.. ....+.+.++++|+++.++++|..|||+..
T Consensus 103 ~~--------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEk 134 (352)
T COG4148 103 KS--------MRAQFDQLVALLGIEHLLDRYPGTLSGGEK 134 (352)
T ss_pred cc--------chHhHHHHHHHhCcHHHHhhCCCccCcchh
Confidence 22 223455667788889999999999999764
No 167
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.46 E-value=7.3e-14 Score=122.73 Aligned_cols=108 Identities=19% Similarity=0.083 Sum_probs=68.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcceeeeccccCC--ccccceeecCCCCCCCHH
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTSSVGNDILGF--DSVGNVVNKPEHGSLDWV 278 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~~~--~~~~~~v~~~~~~~~~~~ 278 (320)
|++++|+||||||||||+++|+ |+++|++|++.+++.+... ......++.++|+...+ .+..+++...........
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~l~-gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~ 102 (211)
T cd03298 24 GEITAIVGPSGSGKSTLLNLIA-GFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLT 102 (211)
T ss_pred CCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccCcc
Confidence 9999999999999999999999 9999999999987543110 01112234444443323 244454443322111111
Q ss_pred hHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 279 KICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 279 ~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.+...++.++++.+|+.+..++.+.+|||++.
T Consensus 103 --~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 134 (211)
T cd03298 103 --AEDRQAIEVALARVGLAGLEKRLPGELSGGER 134 (211)
T ss_pred --HHHHHHHHHHHHHcCCHHHHhCCcccCCHHHH
Confidence 11223445566667778888999999999653
No 168
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=6.8e-14 Score=126.50 Aligned_cols=133 Identities=17% Similarity=0.091 Sum_probs=80.8
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhhhc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEMES 247 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~~~ 247 (320)
+++++++.+.| +...+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.... .....
T Consensus 5 ~l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (255)
T PRK11300 5 LLSVSGLMMRF----GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLT-GFYKPTGGTILLRGQHIEGLPGHQIAR 79 (255)
T ss_pred eEEEeeEEEEE----CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHh-CCcCCCcceEEECCEECCCCCHHHHHh
Confidence 45666655444 334567777765 9999999999999999999999 999999999998764311 11111
Q ss_pred CcceeeeccccCC--ccccceeecCCCC--------CC-C----HHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 248 GRTSSVGNDILGF--DSVGNVVNKPEHG--------SL-D----WVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 248 g~v~~~~~~~~~~--~~~~~~v~~~~~~--------~~-~----~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
..+..++|+...+ .++.+++...... .. . .....+....+.++++.+|+.+..++.+..|||++.
T Consensus 80 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 80 MGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQ 159 (255)
T ss_pred cCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHH
Confidence 1233334443222 2444444332110 00 0 001111223455566677888889999999999643
No 169
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.46 E-value=3.8e-14 Score=125.97 Aligned_cols=120 Identities=18% Similarity=0.066 Sum_probs=72.8
Q ss_pred cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcC-----CCCCceeeeccccch-----hhhhcCcceeeecc
Q psy15138 190 LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGEL-----DNGRGHARQKLFRHK-----HEMESGRTSSVGND 256 (320)
Q Consensus 190 ~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l-----~~~~G~i~~~~~~~~-----~~~~~g~v~~~~~~ 256 (320)
+...++++++|. |++++|+||||||||||+++|+ |++ +|.+|+|.+++.+.. .......++.++|+
T Consensus 11 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~-G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 11 GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLN-RLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHH-hhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence 334567777765 9999999999999999999999 999 999999998764421 11112234444444
Q ss_pred ccCC-ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccc--cccccCCCC
Q psy15138 257 ILGF-DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTT--VFGMTGHVP 312 (320)
Q Consensus 257 ~~~~-~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~--~~~LSG~~~ 312 (320)
...+ .++.+++..... ....... +..+++.++++.+|+.+..++. +.+|||++.
T Consensus 90 ~~~~~~tv~e~l~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~ 147 (227)
T cd03260 90 PNPFPGSIYDNVAYGLRLHGIKLKE--ELDERVEEALRKAALWDEVKDRLHALGLSGGQQ 147 (227)
T ss_pred chhccccHHHHHHhHHHhcCCCcHH--HHHHHHHHHHHHcCCChHHhccCCcccCCHHHH
Confidence 3222 244444433211 1111111 1123444566666777666666 599999654
No 170
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.46 E-value=6.8e-14 Score=115.26 Aligned_cols=126 Identities=17% Similarity=0.094 Sum_probs=84.6
Q ss_pred CeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc-----ch-------hhhhcC
Q psy15138 184 GLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR-----HK-------HEMESG 248 (320)
Q Consensus 184 ~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~-----~~-------~~~~~g 248 (320)
+....|+..+.+.++.+. |+.+.++||||+|||||+|.|+ -+.-|.+|+..+.... .. .+...|
T Consensus 7 ~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~ln-lle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vg 85 (242)
T COG4161 7 GINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLN-LLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVG 85 (242)
T ss_pred ccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHH-HHhCCCCCeEEecccccccccCccHHHHHHHHHhhh
Confidence 344556777777777776 9999999999999999999999 8889999999875322 11 122345
Q ss_pred cceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCCC
Q psy15138 249 RTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPD 313 (320)
Q Consensus 249 ~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~ 313 (320)
+++|.+.....+....+.+..+.. ..++..+...++.++++. +.+.++.++.|-.|||++..
T Consensus 86 mvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkr---lrl~~~adr~plhlsggqqq 148 (242)
T COG4161 86 MVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKR---LRLKPYADRYPLHLSGGQQQ 148 (242)
T ss_pred hhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHH---hccccccccCceecccchhh
Confidence 555544333334444555544433 445555555555555554 44588999999999998754
No 171
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.46 E-value=7.4e-14 Score=128.61 Aligned_cols=84 Identities=40% Similarity=0.565 Sum_probs=77.6
Q ss_pred CCCceEEEeCCCcchhh--ccCC--CCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHH
Q psy15138 12 AENAASVFETRIHERDD--DLPE--ASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDT 87 (320)
Q Consensus 12 ~~~~~~~~d~pgh~~~~--~~~~--~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~ 87 (320)
++.-++|+|+-|||+|. .+-| ....||.+| +|+||+|++.+|+|||.|+.++.+|+|+++||+|+++.+.+..+
T Consensus 199 aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglL--vVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~ddr~~~v 276 (527)
T COG5258 199 ADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLL--VVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDDRFQGV 276 (527)
T ss_pred cccEEEEEecCCccHHHHHHHHHHhccccceEEE--EEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcHHHHHHH
Confidence 45679999999999999 3333 678999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcC
Q psy15138 88 LKLLVRILKS 97 (320)
Q Consensus 88 l~~~~~~l~~ 97 (320)
.+++..+|+.
T Consensus 277 ~~ei~~~Lk~ 286 (527)
T COG5258 277 VEEISALLKR 286 (527)
T ss_pred HHHHHHHHHH
Confidence 9999999885
No 172
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.46 E-value=3.1e-14 Score=126.97 Aligned_cols=106 Identities=18% Similarity=0.118 Sum_probs=67.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-hhhhcCcceeeeccccCCccccceeecCCC---CCCCH
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-HEMESGRTSSVGNDILGFDSVGNVVNKPEH---GSLDW 277 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~---~~~~~ 277 (320)
|++++|+||||||||||+++|+ |+++|++|+|.+++.+.. .....++++|.+.. +...++.+++..... .....
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l-~~~~tv~e~l~~~~~~~~~~~~~ 88 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLIS-GLAQPTSGGVILEGKQITEPGPDRMVVFQNYSL-LPWLTVRENIALAVDRVLPDLSK 88 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEECCCCChhheEEecCccc-CCCCCHHHHHHHHHHhcccCCCH
Confidence 9999999999999999999999 999999999998754321 11123444443221 111244444433211 11122
Q ss_pred HhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 278 VKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 278 ~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.. ..+++.++++.+|+.+..++.+.+|||++.
T Consensus 89 ~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 120 (230)
T TIGR01184 89 SE---RRAIVEEHIALVGLTEAADKRPGQLSGGMK 120 (230)
T ss_pred HH---HHHHHHHHHHHcCCHHHHcCChhhCCHHHH
Confidence 22 123344566667778888999999999653
No 173
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.45 E-value=9.4e-14 Score=135.07 Aligned_cols=89 Identities=25% Similarity=0.301 Sum_probs=75.8
Q ss_pred CCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-------hhHHHHHHHHHHcCCC-cEEEEeCCCCCC
Q psy15138 11 TAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-------GMTKEHLGLALALSVP-VFVVVTKIDMCP 80 (320)
Q Consensus 11 ~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-------~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~ 80 (320)
|....+.++|+|||++|+ |++|++.+|.++| ||+|++|.. +||+||+.+|+.+++| .++++||||+.+
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIl--VVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVL--IIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATT 159 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEE--EEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCc
Confidence 345679999999999999 9999999999999 999999843 7999999999999996 577899999874
Q ss_pred ----hhHHHHHHHHHHHhhcCCCcc
Q psy15138 81 ----PNVLQDTLKLLVRILKSPGCR 101 (320)
Q Consensus 81 ----~~~le~~l~~~~~~l~~~~~~ 101 (320)
.+.+++..+++...++..++.
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~ 184 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYN 184 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCC
Confidence 455777888888888766654
No 174
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.45 E-value=5.4e-14 Score=126.20 Aligned_cols=129 Identities=12% Similarity=0.004 Sum_probs=79.7
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---------h
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---------H 243 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---------~ 243 (320)
++++++.+.| +...+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. .
T Consensus 3 l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (242)
T PRK11124 3 IQLNGINCFY----GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLN-LLEMPRSGTLNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred EEEEeeEEEE----CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEecccccccchhhH
Confidence 3455544443 334567777665 9999999999999999999999 999999999998764310 0
Q ss_pred hhhcCcceeeeccccCC--ccccceeecCC--CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 244 EMESGRTSSVGNDILGF--DSVGNVVNKPE--HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 244 ~~~~g~v~~~~~~~~~~--~~~~~~v~~~~--~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
......++.++|....+ .++.+++.... ........ ...++.++++.+|+.+..++.+..|||++.
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~ 147 (242)
T PRK11124 78 RELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQ---ALARAEKLLERLRLKPYADRFPLHLSGGQQ 147 (242)
T ss_pred HHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHH---HHHHHHHHHHHcCChhhhhCChhhCCHHHH
Confidence 11122344444443322 23444442211 01111111 223455666667778888999999999653
No 175
>PLN03126 Elongation factor Tu; Provisional
Probab=99.45 E-value=7.9e-14 Score=136.31 Aligned_cols=89 Identities=24% Similarity=0.215 Sum_probs=76.6
Q ss_pred CCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCChh-HHHH
Q psy15138 11 TAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCPPN-VLQD 86 (320)
Q Consensus 11 ~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~~~-~le~ 86 (320)
|+...+.|+|+|||++|+ |+.|+..+|.+++ ||+|++|+++||+||+.++..+++| .++++||+|+++.+ .++.
T Consensus 141 ~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ail--VVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~ 218 (478)
T PLN03126 141 TENRHYAHVDCPGHADYVKNMITGAAQMDGAIL--VVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLEL 218 (478)
T ss_pred cCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEE--EEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHH
Confidence 356679999999999999 9999999999999 9999999999999999999999998 67889999998744 4565
Q ss_pred HHHHHHHhhcCCCcc
Q psy15138 87 TLKLLVRILKSPGCR 101 (320)
Q Consensus 87 ~l~~~~~~l~~~~~~ 101 (320)
+.+++...|+..++.
T Consensus 219 i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 219 VELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHHHHhcCCC
Confidence 666888887765443
No 176
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.45 E-value=4.6e-14 Score=125.43 Aligned_cols=136 Identities=15% Similarity=0.092 Sum_probs=79.5
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC---CCCceeeeccccchhhhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD---NGRGHARQKLFRHKHEMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~---~~~G~i~~~~~~~~~~~~~g~ 249 (320)
+.+.++++.+........+++++++. |++++|+||||||||||+++|+ |+++ |++|++.+++.+.........
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~-G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAIS-GRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHh-CccCCCCCCceEEEECCEECChHHhccc
Confidence 34555555443321134567777765 9999999999999999999999 9999 999999987644221112233
Q ss_pred ceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHH-HhcccCCccccccccccccCCCC
Q psy15138 250 TSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVIT-FIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 250 v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~-~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
++.++|+...| .++.+++..... .............++.+ .++..++.+..++.+..|||++.
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 149 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGER 149 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHH
Confidence 44455543222 244444433211 10000000011112223 56666667778889999998653
No 177
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.45 E-value=9.8e-14 Score=126.83 Aligned_cols=133 Identities=16% Similarity=0.144 Sum_probs=77.7
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCccee
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSS 252 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~ 252 (320)
++++++.+.|. +...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.........++.
T Consensus 7 l~~~~l~~~~~---~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~i~~~~~~~~i~~ 82 (272)
T PRK15056 7 IVVNDVTVTWR---NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALM-GFVRLASGKISILGQPTRQALQKNLVAY 82 (272)
T ss_pred EEEEeEEEEec---CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEEhHHhhccceEEE
Confidence 55555554442 123466666665 9999999999999999999999 9999999999987654221111112344
Q ss_pred eecccc---CCc-cccceeecCCCCCCCH--HhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 253 VGNDIL---GFD-SVGNVVNKPEHGSLDW--VKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 253 ~~~~~~---~~~-~~~~~v~~~~~~~~~~--~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
++|+.. .+. ...+++..+....... ........++.++++.+|+.+..++++..|||++.
T Consensus 83 v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~ 148 (272)
T PRK15056 83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQK 148 (272)
T ss_pred eccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHH
Confidence 444421 111 2233333221110000 00011122334555666777788999999999653
No 178
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.45 E-value=3.2e-14 Score=123.91 Aligned_cols=117 Identities=15% Similarity=0.020 Sum_probs=72.0
Q ss_pred ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcCcceeeeccccCC--c
Q psy15138 189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESGRTSSVGNDILGF--D 261 (320)
Q Consensus 189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g~v~~~~~~~~~~--~ 261 (320)
|+...++++++|. |++++|+||||||||||+++|+ |+++|++|++.+++.+... ......++..+|....+ .
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 88 (198)
T TIGR01189 10 RGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILA-GLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPEL 88 (198)
T ss_pred ECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCC
Confidence 3445567777775 9999999999999999999999 9999999999987543111 11112233333332212 2
Q ss_pred cccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 262 SVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 262 ~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
+..+++....... .. . ..++.++++.+++.++.++.+..|||++.
T Consensus 89 tv~~~l~~~~~~~-~~-~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 133 (198)
T TIGR01189 89 SALENLHFWAAIH-GG-A----QRTIEDALAAVGLTGFEDLPAAQLSAGQQ 133 (198)
T ss_pred cHHHHHHHHHHHc-CC-c----HHHHHHHHHHcCCHHHhcCChhhcCHHHH
Confidence 2333332211000 00 0 12344556666777888899999999653
No 179
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.45 E-value=5.3e-14 Score=127.42 Aligned_cols=123 Identities=20% Similarity=0.091 Sum_probs=75.6
Q ss_pred ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCcceeeeccccCC--
Q psy15138 189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGRTSSVGNDILGF-- 260 (320)
Q Consensus 189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~v~~~~~~~~~~-- 260 (320)
|+...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. .......+..++|+...+
T Consensus 11 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (256)
T TIGR03873 11 AGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLA-GALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVP 89 (256)
T ss_pred ECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHc-CCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCC
Confidence 3344567777775 9999999999999999999999 999999999998754311 111112334444443211
Q ss_pred ccccceeecCCCC--CCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 261 DSVGNVVNKPEHG--SLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 261 ~~~~~~v~~~~~~--~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.++.+++...... ........+...++.++++.+++.+..++.+..|||++.
T Consensus 90 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 143 (256)
T TIGR03873 90 LTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGER 143 (256)
T ss_pred CCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence 2344444332110 000000011223455666667778888999999999654
No 180
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.45 E-value=5.3e-14 Score=127.07 Aligned_cols=120 Identities=16% Similarity=0.188 Sum_probs=75.7
Q ss_pred ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh----------------hhhcCc
Q psy15138 189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH----------------EMESGR 249 (320)
Q Consensus 189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~----------------~~~~g~ 249 (320)
|+...++++++|. |++++|+||||||||||+++|+ |+++|++|++.+++..... ......
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 88 (252)
T TIGR03005 10 FGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILM-TLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNK 88 (252)
T ss_pred eCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEEccccccccccccccchhHHHHHhhC
Confidence 3334567777775 9999999999999999999999 9999999999987543110 011223
Q ss_pred ceeeeccccCC--ccccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 250 TSSVGNDILGF--DSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 250 v~~~~~~~~~~--~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
++.++|....+ .+..+++..... ....... ...++.++++.+|+.+..++.+..|||++.
T Consensus 89 i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~ 152 (252)
T TIGR03005 89 IGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAE---AEKRAMELLDMVGLADKADHMPAQLSGGQQ 152 (252)
T ss_pred eEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCChhHhhcChhhcCHHHH
Confidence 44444443222 233444432111 1111111 223445566667778888999999999653
No 181
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.45 E-value=3.8e-13 Score=132.88 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=48.7
Q ss_pred eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138 174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF 239 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~ 239 (320)
.++++++++..+ ..+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.
T Consensus 249 ~~i~~~~l~~~~------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~ 310 (491)
T PRK10982 249 VILEVRNLTSLR------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLF-GIREKSAGTITLHGK 310 (491)
T ss_pred cEEEEeCccccc------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHc-CCCcCCccEEEECCE
Confidence 356777776542 2367777765 9999999999999999999999 999999999998754
No 182
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=4e-14 Score=132.83 Aligned_cols=138 Identities=15% Similarity=0.152 Sum_probs=80.6
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC----CCCceeeeccccch---h-
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD----NGRGHARQKLFRHK---H- 243 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~----~~~G~i~~~~~~~~---~- 243 (320)
++++++++..|....+...++++++|. |++++|+|+||||||||+++|+ |+++ |++|+|.+++.+.. .
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~-Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAIC-GVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHH-ccCCCCCCCcceEEEECCEECCcCCHH
Confidence 466676665553221234577888776 9999999999999999999999 9986 58899998754311 1
Q ss_pred ---hhhcCcceeeeccccC-C---ccccceeecCCC--CCCC-H-HhHHHHHHHHHHHhcccCCc---cccccccccccC
Q psy15138 244 ---EMESGRTSSVGNDILG-F---DSVGNVVNKPEH--GSLD-W-VKICERSAKVITFIDLAGHE---RYLKTTVFGMTG 309 (320)
Q Consensus 244 ---~~~~g~v~~~~~~~~~-~---~~~~~~v~~~~~--~~~~-~-~~~~~~~~~~l~~l~l~gl~---~~~~~~~~~LSG 309 (320)
..+...++.++|+... + .++.+.+..... .... + ....+...++.++++.+|+. +..+++|++|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 1111235555555321 1 223333321110 0000 0 00011223445566666665 457899999999
Q ss_pred CCCC
Q psy15138 310 HVPD 313 (320)
Q Consensus 310 ~~~~ 313 (320)
++..
T Consensus 162 G~~Q 165 (330)
T PRK15093 162 GECQ 165 (330)
T ss_pred HHHH
Confidence 7643
No 183
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=7.1e-14 Score=128.41 Aligned_cols=131 Identities=13% Similarity=0.125 Sum_probs=81.9
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCC---ceeeeccccch------
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGR---GHARQKLFRHK------ 242 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~---G~i~~~~~~~~------ 242 (320)
.++++++++.|... ...+++++++. |++++|+||||||||||+++|+ |+++|.+ |+|.+++....
T Consensus 5 ~l~i~~l~~~~~~~--~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~-G~~~p~~g~~G~i~i~g~~~~~~~~~~ 81 (282)
T PRK13640 5 IVEFKHVSFTYPDS--KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLIN-GLLLPDDNPNSKITVDGITLTAKTVWD 81 (282)
T ss_pred eEEEEEEEEEcCCC--CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHh-cccCCCCCCCcEEEECCEECCcCCHHH
Confidence 35566655544211 12366666665 9999999999999999999999 9999987 89988754321
Q ss_pred hhhhcCcceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 243 HEMESGRTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 243 ~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
....+|+++|.+...+...++.+++.+... ........ .+++.++++.+|+.++.++.+..|||++
T Consensus 82 ~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~---~~~~~~~l~~~~L~~~~~~~~~~LS~G~ 148 (282)
T PRK13640 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEM---IKIVRDVLADVGMLDYIDSEPANLSGGQ 148 (282)
T ss_pred HHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHH---HHHHHHHHHHCCChhHhcCCcccCCHHH
Confidence 112244544443212222345555543211 11222222 2345556667777888999999999964
No 184
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.44 E-value=5.4e-14 Score=126.66 Aligned_cols=117 Identities=18% Similarity=0.087 Sum_probs=73.0
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCC-----Cceeeeccccch-----hhhhcCcceeeecccc
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNG-----RGHARQKLFRHK-----HEMESGRTSSVGNDIL 258 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~-----~G~i~~~~~~~~-----~~~~~g~v~~~~~~~~ 258 (320)
..++++++|. |++++|+||||||||||+++|+ |+++|. +|+|.+++.+.. .......++.++|+..
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 92 (247)
T TIGR00972 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLN-RMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN 92 (247)
T ss_pred eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHh-ccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcc
Confidence 4467777765 9999999999999999999999 999998 999998754321 1111233444454432
Q ss_pred CC-ccccceeecCCC-CC-CCHHhHHHHHHHHHHHhcccCCc----cccccccccccCCCC
Q psy15138 259 GF-DSVGNVVNKPEH-GS-LDWVKICERSAKVITFIDLAGHE----RYLKTTVFGMTGHVP 312 (320)
Q Consensus 259 ~~-~~~~~~v~~~~~-~~-~~~~~~~~~~~~~l~~l~l~gl~----~~~~~~~~~LSG~~~ 312 (320)
.+ .+..+++..... .. ...... ..++.++++.+|+. +..++.+..|||++.
T Consensus 93 ~~~~tv~e~l~~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~ 150 (247)
T TIGR00972 93 PFPMSIYDNIAYGPRLHGIKDKKEL---DEIVEESLKKAALWDEVKDRLHDSALGLSGGQQ 150 (247)
T ss_pred cCCCCHHHHHHhHHHhcCCCCHHHH---HHHHHHHHHHcCCCcchhhHhhCCcccCCHHHH
Confidence 22 233444432211 11 112222 23344555566665 678889999999653
No 185
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=6e-14 Score=128.15 Aligned_cols=132 Identities=15% Similarity=0.138 Sum_probs=82.5
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g 248 (320)
.++++++++.|.. ....+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. ......
T Consensus 7 ~l~~~nl~~~~~~--~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 83 (271)
T PRK13632 7 MIKVENVSFSYPN--SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILT-GLLKPQSGEIKIDGITISKENLKEIRK 83 (271)
T ss_pred EEEEEeEEEEcCC--CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCceEEECCEecCcCCHHHHhc
Confidence 4666666555421 123456666665 9999999999999999999999 999999999998764421 111122
Q ss_pred cceeeeccc---cCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 249 RTSSVGNDI---LGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 249 ~v~~~~~~~---~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.++.++|+. +...++.+++..... ....... ...++.++++.+|+.++.++.+..|||++.
T Consensus 84 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 148 (271)
T PRK13632 84 KIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKK---MKDIIDDLAKKVGMEDYLDKEPQNLSGGQK 148 (271)
T ss_pred ceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHH---HHHHHHHHHHHcCCHHHhhCCcccCCHHHH
Confidence 344445442 211244454433211 1122222 223445566667778889999999999653
No 186
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=1.1e-13 Score=124.25 Aligned_cols=126 Identities=15% Similarity=0.148 Sum_probs=77.0
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~ 249 (320)
++++++.+.| +...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. .......
T Consensus 4 l~~~~l~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 78 (241)
T PRK14250 4 IEFKEVSYSS----FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLIN-RLIDPTEGSILIDGVDIKTIDVIDLRRK 78 (241)
T ss_pred EEEEeEEEEe----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEEhhhcChHHhhhc
Confidence 4455554433 334566777765 9999999999999999999999 999999999998764311 1111223
Q ss_pred ceeeeccccCC-ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138 250 TSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP 312 (320)
Q Consensus 250 v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~ 312 (320)
++..+|+...+ .++.+++....... . .. ..++.++++.+|+. ++.++.+..|||++.
T Consensus 79 i~~~~q~~~~~~~tv~e~l~~~~~~~-~--~~---~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~ 137 (241)
T PRK14250 79 IGMVFQQPHLFEGTVKDNIEYGPMLK-G--EK---NVDVEYYLSIVGLNKEYATRDVKNLSGGEA 137 (241)
T ss_pred EEEEecCchhchhhHHHHHhcchhhc-C--cH---HHHHHHHHHHcCCCHHHhhCCcccCCHHHH
Confidence 44445543222 23333333221111 1 11 12344555666775 577889999999653
No 187
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.44 E-value=1.3e-13 Score=136.73 Aligned_cols=133 Identities=14% Similarity=0.078 Sum_probs=82.5
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhhhc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEMES 247 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~~~ 247 (320)
+++++++++.| +...++++++|. |++++|+||||||||||+|+|+ |+++|++|+|.+++.+.. .....
T Consensus 5 ~l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~-Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 79 (510)
T PRK09700 5 YISMAGIGKSF----GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLS-GIHEPTKGTITINNINYNKLDHKLAAQ 79 (510)
T ss_pred eEEEeeeEEEc----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHc-CCcCCCccEEEECCEECCCCCHHHHHH
Confidence 45666655444 334567777775 9999999999999999999999 999999999998754321 11111
Q ss_pred CcceeeeccccCC--ccccceeecCCCC---CCCH--HhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 248 GRTSSVGNDILGF--DSVGNVVNKPEHG---SLDW--VKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 248 g~v~~~~~~~~~~--~~~~~~v~~~~~~---~~~~--~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
..++.++|+...+ .++.+++..+... .... ....+...++.++++.+|+.+..++++++|||++.
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~ 151 (510)
T PRK09700 80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHK 151 (510)
T ss_pred CCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHH
Confidence 2344444443222 2344444332210 0010 01112223455666677778888999999999653
No 188
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.44 E-value=9.6e-14 Score=131.51 Aligned_cols=111 Identities=21% Similarity=0.146 Sum_probs=72.5
Q ss_pred cCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-------hhhcCcceeeeccccCC--cccc
Q psy15138 197 SQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-------EMESGRTSSVGNDILGF--DSVG 264 (320)
Q Consensus 197 ~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-------~~~~g~v~~~~~~~~~~--~~~~ 264 (320)
+++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+... ......++.++|+...| .++.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~ia-Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIA-GLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVR 93 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHH
Confidence 44553 9999999999999999999999 9999999999987543210 01123344555554333 2455
Q ss_pred ceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 265 NVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 265 ~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
+++.++.... ... +...++.++++.+|+.++.++.+.+|||++.
T Consensus 94 enl~~~~~~~-~~~---~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqk 137 (354)
T TIGR02142 94 GNLRYGMKRA-RPS---ERRISFERVIELLGIGHLLGRLPGRLSGGEK 137 (354)
T ss_pred HHHHHHhhcc-Chh---HHHHHHHHHHHHcCChhHhcCChhhCCHHHH
Confidence 5554432211 111 1223445566677778889999999999653
No 189
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.44 E-value=7.6e-14 Score=122.90 Aligned_cols=114 Identities=23% Similarity=0.212 Sum_probs=71.4
Q ss_pred ccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcceeeeccccCC--ccccceeec
Q psy15138 196 ESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTSSVGNDILGF--DSVGNVVNK 269 (320)
Q Consensus 196 ~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~~~--~~~~~~v~~ 269 (320)
.++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+... ......++.++|+...| .+..+++..
T Consensus 15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~ 93 (213)
T TIGR01277 15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLIA-GFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGL 93 (213)
T ss_pred eeeEEEEeCCcEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHh
Confidence 344444 9999999999999999999999 9999999999987543211 11123345555553332 244444433
Q ss_pred CCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 270 PEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
......... .+...++.++++.+|+.+..++.+..|||++.
T Consensus 94 ~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 134 (213)
T TIGR01277 94 GLHPGLKLN--AEQQEKVVDAAQQVGIADYLDRLPEQLSGGQR 134 (213)
T ss_pred HhhccCCcc--HHHHHHHHHHHHHcCcHHHhhCCcccCCHHHH
Confidence 211111100 11123344566667778888999999999653
No 190
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.44 E-value=4.9e-14 Score=142.87 Aligned_cols=135 Identities=13% Similarity=0.123 Sum_probs=82.7
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc----------
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---------- 241 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---------- 241 (320)
++++++++..|........++++++|. |++++|+||||||||||+++|+ |+++|++|.|.+++...
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~-Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALM-RLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHH-cCCCCCCeEEEECCEEecccccccccc
Confidence 567777665553211124577777776 9999999999999999999999 99999999998754210
Q ss_pred ----h---hhhhcCcceeeeccc----cCCccccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCCc---cccccccc
Q psy15138 242 ----K---HEMESGRTSSVGNDI----LGFDSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGHE---RYLKTTVF 305 (320)
Q Consensus 242 ----~---~~~~~g~v~~~~~~~----~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~---~~~~~~~~ 305 (320)
. ...+...++.++|+. ....++.+++..+.. ......+.. +++.++++.+|+. +..+++++
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~---~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAM---VEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH---HHHHHHHHHCCCCChhhHHhCCCc
Confidence 0 011112345555543 112345555543321 122333322 3344455555663 46789999
Q ss_pred cccCCCCC
Q psy15138 306 GMTGHVPD 313 (320)
Q Consensus 306 ~LSG~~~~ 313 (320)
+|||++..
T Consensus 168 ~LSgGq~Q 175 (623)
T PRK10261 168 QLSGGMRQ 175 (623)
T ss_pred cCCHHHHH
Confidence 99997543
No 191
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=1.1e-13 Score=137.17 Aligned_cols=130 Identities=16% Similarity=0.087 Sum_probs=82.1
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC--CCceeeeccccch----hhh
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN--GRGHARQKLFRHK----HEM 245 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~--~~G~i~~~~~~~~----~~~ 245 (320)
+++++++++.| +...++++++|. |++++|+||||||||||+|+|+ |+++| ++|+|.+++.+.. ...
T Consensus 5 ~l~~~nl~~~~----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 79 (506)
T PRK13549 5 LLEMKNITKTF----GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLS-GVYPHGTYEGEIIFEGEELQASNIRDT 79 (506)
T ss_pred eEEEeeeEEEe----CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHh-CCCCCCCCCeEEEECCEECCCCCHHHH
Confidence 46666665544 334577888776 9999999999999999999999 99986 7999998754321 111
Q ss_pred hcCcceeeeccccCC--ccccceeecCCCC----CCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 246 ESGRTSSVGNDILGF--DSVGNVVNKPEHG----SLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 246 ~~g~v~~~~~~~~~~--~~~~~~v~~~~~~----~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
....++.++|+...+ .++.+++..+... ...... ...++.++++.+|+.+..++++.+|||++.
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk 149 (506)
T PRK13549 80 ERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDA---MYLRAQKLLAQLKLDINPATPVGNLGLGQQ 149 (506)
T ss_pred HHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHH---HHHHHHHHHHHcCCCCCcccchhhCCHHHH
Confidence 112234444443222 2444555443211 112222 223445566667777788999999999653
No 192
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.44 E-value=1.2e-13 Score=120.62 Aligned_cols=114 Identities=16% Similarity=0.014 Sum_probs=71.1
Q ss_pred ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcCcceeeeccccCC--c
Q psy15138 189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESGRTSSVGNDILGF--D 261 (320)
Q Consensus 189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g~v~~~~~~~~~~--~ 261 (320)
|+....++++++. |++++|+|+||||||||+++|+ |+++|++|+|.+++..... ......++.++|....+ .
T Consensus 10 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 88 (201)
T cd03231 10 RDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILA-GLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTL 88 (201)
T ss_pred eCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCc
Confidence 3334567777765 9999999999999999999999 9999999999987543111 11122334444432221 2
Q ss_pred cccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 262 SVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 262 ~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
+..+++...... .. .+++.++++.+|+.++.++.+..|||++
T Consensus 89 tv~e~l~~~~~~-----~~---~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 130 (201)
T cd03231 89 SVLENLRFWHAD-----HS---DEQVEEALARVGLNGFEDRPVAQLSAGQ 130 (201)
T ss_pred CHHHHHHhhccc-----cc---HHHHHHHHHHcCChhhhcCchhhCCHHH
Confidence 333333322110 01 1233445555666777788999999854
No 193
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.44 E-value=7.1e-14 Score=123.26 Aligned_cols=129 Identities=19% Similarity=0.049 Sum_probs=77.5
Q ss_pred eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcc
Q psy15138 174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRT 250 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v 250 (320)
.++++++++..| +....+++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++...........+
T Consensus 10 ~~l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~-G~~~~~~G~i~~~g~~i~~~~~~~~i 84 (214)
T PRK13543 10 PLLAAHALAFSR----NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLA-GLLHVESGQIQIDGKTATRGDRSRFM 84 (214)
T ss_pred ceEEEeeEEEec----CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHh-CCCCCCCeeEEECCEEccchhhhhce
Confidence 356666665544 234567777775 9999999999999999999999 99999999999875432111111223
Q ss_pred eeeeccccCCc--cccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 251 SSVGNDILGFD--SVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 251 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.+++|....+. +..+++....... . .... +.+.++++.+++.+..++.+..|||++.
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~-~-~~~~---~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 143 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLH-G-RRAK---QMPGSALAIVGLAGYEDTLVRQLSAGQK 143 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhc-C-CcHH---HHHHHHHHHcCChhhccCChhhCCHHHH
Confidence 34444322221 3333332211000 0 0111 2223445556667778899999999653
No 194
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.44 E-value=9.8e-14 Score=137.36 Aligned_cols=130 Identities=14% Similarity=0.077 Sum_probs=81.8
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhhhc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEMES 247 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~~~ 247 (320)
.++++++++.| +...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. .....
T Consensus 4 ~l~~~~l~~~~----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 78 (501)
T PRK11288 4 YLSFDGIGKTF----PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILS-GNYQPDAGSILIDGQEMRFASTTAALA 78 (501)
T ss_pred eEEEeeeEEEE----CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCCEEEECCEECCCCCHHHHHh
Confidence 45666555444 334567777775 9999999999999999999999 999999999998754321 11112
Q ss_pred CcceeeeccccCC--ccccceeecCCCC---C-CCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 248 GRTSSVGNDILGF--DSVGNVVNKPEHG---S-LDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 248 g~v~~~~~~~~~~--~~~~~~v~~~~~~---~-~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
..++.++|....+ .++.+++..+... . ...... .+++.++++.+|+.+..++.+..|||++.
T Consensus 79 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LSgGq~ 146 (501)
T PRK11288 79 AGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLL---NYEAREQLEHLGVDIDPDTPLKYLSIGQR 146 (501)
T ss_pred CCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHH---HHHHHHHHHHcCCCCCcCCchhhCCHHHH
Confidence 2344455543222 2444444433211 1 112222 23444566667777778899999999653
No 195
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.44 E-value=9.7e-14 Score=126.85 Aligned_cols=122 Identities=18% Similarity=0.124 Sum_probs=74.9
Q ss_pred eecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCC--------Cceeeeccccch---h---hhhcCcc
Q psy15138 188 QYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNG--------RGHARQKLFRHK---H---EMESGRT 250 (320)
Q Consensus 188 ~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~--------~G~i~~~~~~~~---~---~~~~g~v 250 (320)
.|....++++++|. |++++|+||||||||||+++|+ |+++|+ +|+|.+++.... . ...++++
T Consensus 10 ~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~la-G~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v 88 (272)
T PRK13547 10 ARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALA-GDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVL 88 (272)
T ss_pred EECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEe
Confidence 33445567777775 9999999999999999999999 999998 899998754311 1 1123444
Q ss_pred eeeeccccCCccccceeecCCCCC---CCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 251 SSVGNDILGFDSVGNVVNKPEHGS---LDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 251 ~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
+|.+...+. .++.+++....... ..... .+..+.+.++++.+|+.+..++.+..|||++.
T Consensus 89 ~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 151 (272)
T PRK13547 89 PQAAQPAFA-FSAREIVLLGRYPHARRAGALT-HRDGEIAWQALALAGATALVGRDVTTLSGGEL 151 (272)
T ss_pred cccCCCCCC-CcHHHHHhhcccccccccccCC-HHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence 443322222 23444443322110 00000 11123344566667778888899999999653
No 196
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.44 E-value=1e-13 Score=131.21 Aligned_cols=102 Identities=20% Similarity=0.116 Sum_probs=68.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-------hhhhcCcceeeeccccCC--ccccceeecCCC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-------HEMESGRTSSVGNDILGF--DSVGNVVNKPEH 272 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-------~~~~~g~v~~~~~~~~~~--~~~~~~v~~~~~ 272 (320)
|++++|+||||||||||+++|+ |+++|++|+|.+++.... .......++.++|+...| .++.+++.++..
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~ia-Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 102 (352)
T PRK11144 24 QGITAIFGRSGAGKTSLINAIS-GLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA 102 (352)
T ss_pred CCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh
Confidence 9999999999999999999999 999999999998754311 011123345555554333 244444443221
Q ss_pred CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 273 GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
. ...+++.++++.+|+.+..++.+.+|||++.
T Consensus 103 -----~---~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~ 134 (352)
T PRK11144 103 -----K---SMVAQFDKIVALLGIEPLLDRYPGSLSGGEK 134 (352)
T ss_pred -----h---hhHHHHHHHHHHcCCchhhhCCcccCCHHHH
Confidence 0 1123445566667778889999999999653
No 197
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=1.1e-13 Score=123.59 Aligned_cols=108 Identities=22% Similarity=0.184 Sum_probs=69.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcceeeeccccCC--ccccceeecCCCCCCCHH
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTSSVGNDILGF--DSVGNVVNKPEHGSLDWV 278 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~~~--~~~~~~v~~~~~~~~~~~ 278 (320)
|++++|+||||||||||+++|+ |+++|.+|++.+++.+... ......++.++|....+ .+..+++...........
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 103 (232)
T PRK10771 25 GERVAILGPSGAGKSTLLNLIA-GFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLN 103 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccCCC
Confidence 9999999999999999999999 9999999999987643211 00112234444443222 244444433221111111
Q ss_pred hHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 279 KICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 279 ~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.....++.++++.+|+.++.++.+..|||++.
T Consensus 104 --~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 135 (232)
T PRK10771 104 --AAQREKLHAIARQMGIEDLLARLPGQLSGGQR 135 (232)
T ss_pred --HHHHHHHHHHHHHcCcHHHHhCCcccCCHHHH
Confidence 11234455667777888889999999999654
No 198
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.43 E-value=4.9e-14 Score=128.45 Aligned_cols=134 Identities=18% Similarity=0.173 Sum_probs=78.8
Q ss_pred eeeeeecCCCeeee-----ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---h
Q psy15138 175 LLRQRKLDNGLTGQ-----YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---H 243 (320)
Q Consensus 175 ~~~~~~~~~~~~~~-----~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~ 243 (320)
+++++++++.|... .+...+++++++. |++++|+||||||||||+++|+ |+++|.+|+|.+++.+.. .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLA-GMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHh-CCCCCCCCEEEECCEECCCCch
Confidence 35666665544210 0123467777775 9999999999999999999999 999999999998754321 1
Q ss_pred hhhcCcceeeecccc--CC--ccccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCC-ccccccccccccCCCC
Q psy15138 244 EMESGRTSSVGNDIL--GF--DSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGH-ERYLKTTVFGMTGHVP 312 (320)
Q Consensus 244 ~~~~g~v~~~~~~~~--~~--~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl-~~~~~~~~~~LSG~~~ 312 (320)
......++.++|+.. .+ .+..+++..... ....... ..+++.++++.+|+ .+..++.+..|||++.
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~ 155 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQ---REKQIIETLRQVGLLPDHASYYPHMLAPGQK 155 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHH---HHHHHHHHHHHcCCChHHHhcCchhcCHHHH
Confidence 111123444444421 11 122223222111 1111111 22344556666777 3667888999999654
No 199
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.43 E-value=1.3e-13 Score=136.11 Aligned_cols=127 Identities=17% Similarity=0.059 Sum_probs=78.6
Q ss_pred eeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhhhcCcceeeeccc
Q psy15138 185 LTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEMESGRTSSVGNDI 257 (320)
Q Consensus 185 ~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~~~g~v~~~~~~~ 257 (320)
+...|+...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. .......++.++|+.
T Consensus 4 l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 82 (491)
T PRK10982 4 ISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLF-GIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQEL 82 (491)
T ss_pred eEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHc-CCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccc
Confidence 34445445677777776 9999999999999999999999 999999999998764311 111122344444443
Q ss_pred cCC--ccccceeecCCCCCCCH-HhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 258 LGF--DSVGNVVNKPEHGSLDW-VKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 258 ~~~--~~~~~~v~~~~~~~~~~-~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
..+ .++.+++..+....... ....+..+++.++++.+|+.+..++.+.+|||++.
T Consensus 83 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~ 140 (491)
T PRK10982 83 NLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQM 140 (491)
T ss_pred ccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHH
Confidence 222 34445544332110010 01111223444556666777778899999999653
No 200
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=8.6e-14 Score=127.53 Aligned_cols=133 Identities=12% Similarity=0.059 Sum_probs=82.1
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---h---hh
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---H---EM 245 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~---~~ 245 (320)
+++++++++.|... ....+++++++. |++++|+||||||||||+++|+ |+++|.+|+|.+++.+.. . ..
T Consensus 4 ~l~~~~l~~~~~~~-~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 81 (277)
T PRK13642 4 ILEVENLVFKYEKE-SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLID-GLFEEFEGKVKIDGELLTAENVWNLRR 81 (277)
T ss_pred eEEEEEEEEEcCCC-CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh-cCCCCCCCEEEECCEECCcCCHHHHhc
Confidence 45667666555321 112356666665 9999999999999999999999 999999999998754321 1 11
Q ss_pred hcCcceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 246 ESGRTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 246 ~~g~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.+++++|.++..+...++.+++..... ........ .+++.++++.+|+.++.++.+..|||++.
T Consensus 82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 146 (277)
T PRK13642 82 KIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEM---IKRVDEALLAVNMLDFKTREPARLSGGQK 146 (277)
T ss_pred ceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHH---HHHHHHHHHHCCCHhHhhCCcccCCHHHH
Confidence 234444443211222344555543221 11222222 23344556667777888999999999653
No 201
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.43 E-value=6.5e-14 Score=127.48 Aligned_cols=117 Identities=18% Similarity=0.180 Sum_probs=73.4
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---h-h--hhcCcceeeeccc---c-
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---H-E--MESGRTSSVGNDI---L- 258 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~-~--~~~g~v~~~~~~~---~- 258 (320)
..++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. . . .....++.++|+. +
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 102 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLL-GLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVN 102 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcC
Confidence 4567777775 9999999999999999999999 999999999998754311 1 0 1122345555543 1
Q ss_pred CCccccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138 259 GFDSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP 312 (320)
Q Consensus 259 ~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~ 312 (320)
...++.+++..... ....... ...++.++++.+|+. ...++.+.+|||++.
T Consensus 103 ~~~tv~~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~ 156 (265)
T TIGR02769 103 PRMTVRQIIGEPLRHLTSLDESE---QKARIAELLDMVGLRSEDADKLPRQLSGGQL 156 (265)
T ss_pred CCCCHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCCChhhhhCChhhCCHHHH
Confidence 11233343322111 1111111 223445566666775 577889999999653
No 202
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.43 E-value=1.1e-13 Score=123.09 Aligned_cols=129 Identities=17% Similarity=0.086 Sum_probs=78.9
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g 248 (320)
.++++++.+.| +...++++++|. |++++|+||||||||||+++|+ |+++|++|++.+++... .......
T Consensus 7 ~i~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (225)
T PRK10247 7 LLQLQNVGYLA----GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVA-SLISPTSGTLLFEGEDISTLKPEIYRQ 81 (225)
T ss_pred eEEEeccEEee----CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHh-cccCCCCCeEEECCEEcCcCCHHHHHh
Confidence 45666665444 334567777775 9999999999999999999999 99999999999875431 1111123
Q ss_pred cceeeeccccCC-ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138 249 RTSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP 312 (320)
Q Consensus 249 ~v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~ 312 (320)
.++.++|....+ .+..+++....... .... ...++.++++.+|+. ...++.+..|||++.
T Consensus 82 ~i~~~~q~~~l~~~tv~enl~~~~~~~-~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~ 143 (225)
T PRK10247 82 QVSYCAQTPTLFGDTVYDNLIFPWQIR-NQQP---DPAIFLDDLERFALPDTILTKNIAELSGGEK 143 (225)
T ss_pred ccEEEecccccccccHHHHHHhHHhhc-CCCh---HHHHHHHHHHHcCCChHHhcCCcccCCHHHH
Confidence 344455543322 23334333211100 0001 112344566666774 467899999999643
No 203
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.42 E-value=1.2e-13 Score=125.13 Aligned_cols=129 Identities=12% Similarity=0.070 Sum_probs=79.0
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----------
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---------- 242 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---------- 242 (320)
++++++.+.| +...++++++|. |++++|+||||||||||+++|+ |+++|++|++.+++....
T Consensus 6 l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 6 LNVIDLHKRY----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN-FLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred EEEeeeEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCeEEEECCEEcccccccccccc
Confidence 4555554444 334567777765 9999999999999999999999 999999999998754311
Q ss_pred ------hhhhcCcceeeeccccCC--ccccceeecCC--CCCCCHHhHHHHHHHHHHHhcccCCcccc-ccccccccCCC
Q psy15138 243 ------HEMESGRTSSVGNDILGF--DSVGNVVNKPE--HGSLDWVKICERSAKVITFIDLAGHERYL-KTTVFGMTGHV 311 (320)
Q Consensus 243 ------~~~~~g~v~~~~~~~~~~--~~~~~~v~~~~--~~~~~~~~~~~~~~~~l~~l~l~gl~~~~-~~~~~~LSG~~ 311 (320)
.......++.++|+...+ .++.+++.... ........ ...++.++++.+|+.+.. ++.+.+|||++
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~ 157 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQE---ARERAVKYLAKVGIDERAQGKYPVHLSGGQ 157 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCChhhhhCCcccCCHHH
Confidence 011122344445543332 23444443211 11112222 223444566667777654 78899999965
Q ss_pred C
Q psy15138 312 P 312 (320)
Q Consensus 312 ~ 312 (320)
.
T Consensus 158 ~ 158 (257)
T PRK10619 158 Q 158 (257)
T ss_pred H
Confidence 4
No 204
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.42 E-value=8.8e-14 Score=141.26 Aligned_cols=95 Identities=19% Similarity=0.137 Sum_probs=69.1
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g 248 (320)
.++++++++.|....+ .++++.++. |+++||+|+||||||||+|+|. |+++|.+|+|++++.+. .....+.
T Consensus 471 ~I~~~nvsf~y~~~~~--~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~-gly~p~~G~I~~dg~dl~~i~~~~lR~ 547 (709)
T COG2274 471 EIEFENVSFRYGPDDP--PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLL-GLYKPQQGRILLDGVDLNDIDLASLRR 547 (709)
T ss_pred eEEEEEEEEEeCCCCc--chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCceEEECCEeHHhcCHHHHHh
Confidence 3567777766655422 567776665 9999999999999999999999 99999999999986652 2223345
Q ss_pred cceeeeccccCC-ccccceeecCCC
Q psy15138 249 RTSSVGNDILGF-DSVGNVVNKPEH 272 (320)
Q Consensus 249 ~v~~~~~~~~~~-~~~~~~v~~~~~ 272 (320)
.++.+.|+...| .+..+++..+..
T Consensus 548 ~ig~V~Q~~~Lf~gSI~eNi~l~~p 572 (709)
T COG2274 548 QVGYVLQDPFLFSGSIRENIALGNP 572 (709)
T ss_pred heeEEcccchhhcCcHHHHHhcCCC
Confidence 566666666554 456677666544
No 205
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=1.3e-13 Score=125.72 Aligned_cols=132 Identities=11% Similarity=0.031 Sum_probs=79.5
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g 248 (320)
.++++++.+.|... ...+++++++. |++++|+||||||||||+++|+ |+++|.+|+|.+++.... ......
T Consensus 7 ~l~i~~l~~~~~~~--~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (269)
T PRK13648 7 IIVFKNVSFQYQSD--ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMI-GIEKVKSGEIFYNNQAITDDNFEKLRK 83 (269)
T ss_pred eEEEEEEEEEcCCC--CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEECCEECCcCCHHHHHh
Confidence 46677666555321 12356666664 9999999999999999999999 999999999998764321 111122
Q ss_pred cceeeeccc---cCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 249 RTSSVGNDI---LGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 249 ~v~~~~~~~---~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.++.++|+. +...+..+++..... ........ ..++.++++.+|+.+..++.+..|||++.
T Consensus 84 ~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 148 (269)
T PRK13648 84 HIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEM---HRRVSEALKQVDMLERADYEPNALSGGQK 148 (269)
T ss_pred heeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHH---HHHHHHHHHHcCCchhhhCCcccCCHHHH
Confidence 334444432 111222333332211 11122222 23344556667777788899999999653
No 206
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=9e-14 Score=127.54 Aligned_cols=116 Identities=16% Similarity=0.086 Sum_probs=71.4
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-------hhhcCcceeeeccc---cC
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-------EMESGRTSSVGNDI---LG 259 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-------~~~~g~v~~~~~~~---~~ 259 (320)
.++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+... ......++.++|.. +.
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~-Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 99 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLN-GLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLF 99 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhc
Confidence 356666665 9999999999999999999999 9999999999987543110 11112334444442 11
Q ss_pred CccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138 260 FDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP 312 (320)
Q Consensus 260 ~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~ 312 (320)
..++.+++..... ......... .++.++++.+|+. ...++.+.+|||++.
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~~LSgG~~ 151 (280)
T PRK13649 100 EETVLKDVAFGPQNFGVSQEEAE---ALAREKLALVGISESLFEKNPFELSGGQM 151 (280)
T ss_pred cccHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHcCCChhhhhCCcccCCHHHH
Confidence 1244444432211 111222222 2334555566776 467889999999654
No 207
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.42 E-value=4.4e-14 Score=137.39 Aligned_cols=139 Identities=18% Similarity=0.218 Sum_probs=92.0
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCC----Cceeeecccc-------
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNG----RGHARQKLFR------- 240 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~----~G~i~~~~~~------- 240 (320)
+++++|+...|........++++++|. ||++||+|.|||||||+.+.|. |++++. +|+|.+++.+
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~-gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALM-GLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHh-ccCCCCCcccceEEEECCcchhcCCHH
Confidence 667777665554433335688888887 9999999999999999999999 999987 7999888653
Q ss_pred chhhhhcCcceeeeccccC-Ccc---ccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCCcccc--ccccccccCCCC
Q psy15138 241 HKHEMESGRTSSVGNDILG-FDS---VGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGHERYL--KTTVFGMTGHVP 312 (320)
Q Consensus 241 ~~~~~~~g~v~~~~~~~~~-~~~---~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~~~~--~~~~~~LSG~~~ 312 (320)
.....+-..++.+||+.+. +++ .++.+..... ....+. +..++++++++.+|+.+.. +++|++|||++.
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~---ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~r 160 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRA---EARKRAVELLEQVGLPDPERRDRYPHQLSGGMR 160 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHH---HHHHHHHHHHHHcCCCChhhhccCCcccCchHH
Confidence 1122233556777777654 333 2333332221 112233 3445566677777776544 459999999876
Q ss_pred CEEEE
Q psy15138 313 DFGML 317 (320)
Q Consensus 313 ~~~~l 317 (320)
..+|+
T Consensus 161 QRv~i 165 (539)
T COG1123 161 QRVMI 165 (539)
T ss_pred HHHHH
Confidence 65543
No 208
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.42 E-value=2.2e-13 Score=135.18 Aligned_cols=127 Identities=18% Similarity=0.089 Sum_probs=81.4
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhhhc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEMES 247 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~~~ 247 (320)
.++++++++.| +...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. .....
T Consensus 11 ~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 85 (510)
T PRK15439 11 LLCARSISKQY----SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIA-GIVPPDSGTLEIGGNPCARLTPAKAHQ 85 (510)
T ss_pred eEEEEeEEEEe----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEECCCCCHHHHHh
Confidence 46666665444 334567777775 9999999999999999999999 999999999998754311 11111
Q ss_pred CcceeeeccccCC--ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 248 GRTSSVGNDILGF--DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 248 g~v~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
..++.++|+...+ .++.+++...... ... ..+++.++++.+|+.++.++++..|||++.
T Consensus 86 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~---~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 146 (510)
T PRK15439 86 LGIYLVPQEPLLFPNLSVKENILFGLPK---RQA---SMQKMKQLLAALGCQLDLDSSAGSLEVADR 146 (510)
T ss_pred CCEEEEeccCccCCCCcHHHHhhccccc---chH---HHHHHHHHHHHcCCCccccCChhhCCHHHH
Confidence 2234444443222 2444444433211 111 223445566667778888999999999653
No 209
>PRK12736 elongation factor Tu; Reviewed
Probab=99.42 E-value=4e-13 Score=129.05 Aligned_cols=87 Identities=22% Similarity=0.256 Sum_probs=73.3
Q ss_pred CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCC-hhHHHHH
Q psy15138 12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCP-PNVLQDT 87 (320)
Q Consensus 12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~-~~~le~~ 87 (320)
....+.|+|+|||++|+ |+.|+..+|.+++ ||++++|+++||++|+.+++.+++| .++++||+|+.+ .+.++.+
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~ll--Vvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i 150 (394)
T PRK12736 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAIL--VVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELV 150 (394)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEE--EEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHH
Confidence 44568999999999999 9999999999999 9999999999999999999999998 578899999984 3445545
Q ss_pred HHHHHHhhcCCCc
Q psy15138 88 LKLLVRILKSPGC 100 (320)
Q Consensus 88 l~~~~~~l~~~~~ 100 (320)
.+++...+....+
T Consensus 151 ~~~i~~~l~~~~~ 163 (394)
T PRK12736 151 EMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHHHhCC
Confidence 5677777665444
No 210
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.42 E-value=1.7e-13 Score=119.52 Aligned_cols=123 Identities=16% Similarity=0.031 Sum_probs=74.9
Q ss_pred eeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcCcce
Q psy15138 177 RQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESGRTS 251 (320)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g~v~ 251 (320)
+++++++.| ....+++++++. |++++|+||||||||||+++|+ |+++|++|++.+++.+... ......++
T Consensus 3 ~~~~l~~~~----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~-G~~~~~~G~v~~~g~~~~~~~~~~~~~i~ 77 (200)
T PRK13540 3 DVIELDFDY----HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIA-GLLNPEKGEILFERQSIKKDLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEe----CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCeeEEECCCccccCHHHHHhheE
Confidence 445444433 334567777765 9999999999999999999999 9999999999987643211 11122344
Q ss_pred eeeccccCC--ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 252 SVGNDILGF--DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 252 ~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
.++|....+ .++.+++....... . .. ..+.++++..++.+..++++..|||++
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~--~--~~---~~~~~~l~~~~l~~~~~~~~~~LS~G~ 132 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFS--P--GA---VGITELCRLFSLEHLIDYPCGLLSSGQ 132 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcC--c--ch---HHHHHHHHHcCCchhhhCChhhcCHHH
Confidence 444432221 23344433321110 0 11 233445555566666788889999864
No 211
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.42 E-value=1.2e-13 Score=123.66 Aligned_cols=119 Identities=18% Similarity=0.142 Sum_probs=75.1
Q ss_pred ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcceeeeccccCCc--c
Q psy15138 189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTSSVGNDILGFD--S 262 (320)
Q Consensus 189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~~~~--~ 262 (320)
|....+++++++. |++++|+||||||||||+++|+ |+++|.+|++.+++..... ......++.+++....|. +
T Consensus 10 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~-G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (237)
T TIGR00968 10 FGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIA-GLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLT 88 (237)
T ss_pred ECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCc
Confidence 3334567777765 9999999999999999999999 9999999999887543111 111233445554433332 3
Q ss_pred ccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 263 VGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 263 ~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
..+++..... ....... ..+++.++++..++.++.++.+..||+++
T Consensus 89 ~~enl~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~lS~G~ 135 (237)
T TIGR00968 89 VRDNIAFGLEIRKHPKAK---IKARVEELLELVQLEGLGDRYPNQLSGGQ 135 (237)
T ss_pred HHHHHHhHHHhcCCCHHH---HHHHHHHHHHHcCCHhHhhCChhhCCHHH
Confidence 3444433211 1111111 12344556666677778889999999965
No 212
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.41 E-value=8.4e-14 Score=122.15 Aligned_cols=125 Identities=14% Similarity=0.026 Sum_probs=75.0
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCccee
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSS 252 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~ 252 (320)
++++++++.| +...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++...........++.
T Consensus 3 l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (207)
T PRK13539 3 LEGEDLACVR----GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIA-GLLPPAAGTIKLDGGDIDDPDVAEACHY 77 (207)
T ss_pred EEEEeEEEEE----CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEeCcchhhHhhcEE
Confidence 4555554443 334567777775 9999999999999999999999 9999999999987543111001112233
Q ss_pred eeccccCC--ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 253 VGNDILGF--DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 253 ~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
+++....+ .+..+++...... ... ...++.++++.+|+.+..++++..|||++
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~-~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 132 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAF-LGG-----EELDIAAALEAVGLAPLAHLPFGYLSAGQ 132 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHh-cCC-----cHHHHHHHHHHcCCHHHHcCChhhcCHHH
Confidence 33322211 2333333221100 000 01224456666677777788999999964
No 213
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.41 E-value=8.3e-14 Score=123.49 Aligned_cols=113 Identities=14% Similarity=0.103 Sum_probs=71.2
Q ss_pred ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCC--ccccc
Q psy15138 191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGF--DSVGN 265 (320)
Q Consensus 191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~--~~~~~ 265 (320)
...++++++|. |++++|+||||||||||+++|+ |+++|.+|++.+++.+.... ....+...+|+...+ .+..+
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~~~~~~~~-~~~~~~~~~q~~~~~~~~t~~~ 89 (223)
T TIGR03740 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMIT-GILRPTSGEIIFDGHPWTRK-DLHKIGSLIESPPLYENLTARE 89 (223)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEecccc-ccccEEEEcCCCCccccCCHHH
Confidence 34566776665 9999999999999999999999 99999999999875432111 111233444432222 23333
Q ss_pred eeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 266 VVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 266 ~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
++..... .... ..++.++++.+|+.+..++.+..|||++.
T Consensus 90 ~~~~~~~~~~~~-------~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 130 (223)
T TIGR03740 90 NLKVHTTLLGLP-------DSRIDEVLNIVDLTNTGKKKAKQFSLGMK 130 (223)
T ss_pred HHHHHHHHcCCC-------HHHHHHHHHHcCCcHHHhhhHhhCCHHHH
Confidence 3322110 0111 12344556667778888999999998653
No 214
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=2.7e-13 Score=123.76 Aligned_cols=133 Identities=14% Similarity=0.047 Sum_probs=80.1
Q ss_pred eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeeccccch---
Q psy15138 174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFRHK--- 242 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~~~--- 242 (320)
..++++++++.| +...++++++|. |++++|+||||||||||+++|+ |+++ |++|++.+++.+..
T Consensus 12 ~~l~i~nl~~~~----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 12 IIISLQNVTISY----GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLN-RMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred ceEEEEeEEEEE----CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHh-ccccccCCCCCceEEEECCEEccccc
Confidence 356777665544 334567777775 9999999999999999999999 9987 58999998754311
Q ss_pred --hhhhcCcceeeeccccCC-ccccceeecCCC-CCCCHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138 243 --HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 --~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~ 312 (320)
.......++.++|+...| .++.+++..... .... ....+...++++.+++. ++.+..++.+..|||++.
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 160 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQ 160 (269)
T ss_pred CCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHH
Confidence 111122344555543322 244444433221 1111 11223334444554442 234567889999999653
No 215
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.41 E-value=1.6e-13 Score=136.75 Aligned_cols=91 Identities=29% Similarity=0.316 Sum_probs=69.0
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch--hhhhcCcc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK--HEMESGRT 250 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~--~~~~~g~v 250 (320)
++++++++.|... .+++++++++ |++++|+||||||||||+++|. |+++|++|+|.+++.+.. .+..+..+
T Consensus 335 I~~~~vsf~Y~~~---~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~-g~~~p~~G~I~i~g~~i~~~~~~lr~~i 410 (529)
T TIGR02868 335 LELRDLSFGYPGS---PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLT-GLLDPLQGEVTLDGVSVSSLQDELRRRI 410 (529)
T ss_pred EEEEEEEEecCCC---CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEECCEEhhhHHHHHHhhe
Confidence 5667776666432 2467777775 9999999999999999999999 999999999999864411 33345567
Q ss_pred eeeeccccCC-ccccceeecC
Q psy15138 251 SSVGNDILGF-DSVGNVVNKP 270 (320)
Q Consensus 251 ~~~~~~~~~~-~~~~~~v~~~ 270 (320)
+.++|+...| .+..+|+..+
T Consensus 411 ~~V~Q~~~lF~~TI~eNI~~g 431 (529)
T TIGR02868 411 SVFAQDAHLFDTTVRDNLRLG 431 (529)
T ss_pred EEEccCcccccccHHHHHhcc
Confidence 7788887766 5667777664
No 216
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.41 E-value=3e-13 Score=122.75 Aligned_cols=135 Identities=16% Similarity=0.091 Sum_probs=79.6
Q ss_pred eeeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeeccccch--
Q psy15138 173 CVLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFRHK-- 242 (320)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~~~-- 242 (320)
...++++++.+.|. ...+++++++. |++++|+||||||||||+++|+ |+++ |++|+|.+++.+..
T Consensus 11 ~~~l~~~~l~~~~~----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~p~~p~~G~i~~~g~~~~~~ 85 (260)
T PRK10744 11 PSKIQVRNLNFYYG----KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFN-RMYELYPEQRAEGEILLDGENILTP 85 (260)
T ss_pred CceEEEEEEEEEeC----CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHh-cccccCCCCCcceEEEECCEEcccc
Confidence 34567776665553 23467777765 9999999999999999999999 9986 47999998754321
Q ss_pred ---hhhhcCcceeeeccccCC-ccccceeecCCC--CCCCHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138 243 ---HEMESGRTSSVGNDILGF-DSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 ---~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~ 312 (320)
.......++.++|+...+ .++.+++..... .........++..++++.+++. ++.+..++.+.+|||++.
T Consensus 86 ~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 162 (260)
T PRK10744 86 KQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQ 162 (260)
T ss_pred ccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHH
Confidence 111123445555543322 233444433211 1122222223334444444331 123567888999999653
No 217
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.41 E-value=1e-13 Score=124.11 Aligned_cols=120 Identities=19% Similarity=0.114 Sum_probs=73.2
Q ss_pred ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcCcceeeecc-ccCC--
Q psy15138 189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESGRTSSVGND-ILGF-- 260 (320)
Q Consensus 189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g~v~~~~~~-~~~~-- 260 (320)
|+...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++..... ......++.++++ ...+
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILS-GLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHh-CCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 3445577777775 9999999999999999999999 9999999999987543111 1112233444322 1111
Q ss_pred ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 261 DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 261 ~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.+..+++..... ......+. ..++.++++.+|+.+..++.+..|||++.
T Consensus 110 ~tv~e~l~~~~~~~~~~~~~~---~~~~~~~l~~~gl~~~~~~~~~~LS~G~~ 159 (236)
T cd03267 110 LPVIDSFYLLAAIYDLPPARF---KKRLDELSELLDLEELLDTPVRQLSLGQR 159 (236)
T ss_pred CcHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHcCChhHhcCChhhCCHHHH
Confidence 233333322111 11122222 22334555666777888899999999654
No 218
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=1.7e-13 Score=122.34 Aligned_cols=120 Identities=16% Similarity=0.079 Sum_probs=74.8
Q ss_pred ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcceeeeccccCC--cc
Q psy15138 189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTSSVGNDILGF--DS 262 (320)
Q Consensus 189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~~~--~~ 262 (320)
++...++++.++. |++++|+||||||||||+++|+ |.++|.+|++.+++.+... ......+..++|+...| .+
T Consensus 10 ~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~-g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (232)
T cd03300 10 YGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIA-GFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLT 88 (232)
T ss_pred eCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCc
Confidence 3334567777765 9999999999999999999999 9999999999987543211 01112334444443332 13
Q ss_pred ccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 263 VGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 263 ~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
..+++..... ....... ...++.+.++.+|+.+..++.+..|||++.
T Consensus 89 ~~~nl~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~ 136 (232)
T cd03300 89 VFENIAFGLRLKKLPKAE---IKERVAEALDLVQLEGYANRKPSQLSGGQQ 136 (232)
T ss_pred HHHHHHHHHHhcCCCHHH---HHHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence 3333332211 1111111 123344556667778888999999999653
No 219
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.41 E-value=2.7e-13 Score=123.19 Aligned_cols=132 Identities=20% Similarity=0.219 Sum_probs=80.1
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCC---Cceeeeccccch------
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNG---RGHARQKLFRHK------ 242 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~---~G~i~~~~~~~~------ 242 (320)
++++.++++.| +...++++++|. |++++|+||||||||||+++|+ |+++|+ +|+|.+++....
T Consensus 4 ~l~~~nl~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~-G~~~p~~~~~G~i~~~g~~~~~~~~~~ 78 (262)
T PRK09984 4 IIRVEKLAKTF----NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLS-GLITGDKSAGSHIELLGRTVQREGRLA 78 (262)
T ss_pred EEEEeeEEEEe----CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHh-ccCCCCCCCceEEEECCEecccccccc
Confidence 45666555444 334567777765 9999999999999999999999 999886 499998764321
Q ss_pred --hhhhcCcceeeeccccCC--ccccceeecCCCCC-------CCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 243 --HEMESGRTSSVGNDILGF--DSVGNVVNKPEHGS-------LDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 243 --~~~~~g~v~~~~~~~~~~--~~~~~~v~~~~~~~-------~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
.......++.++|....+ .++.+++....... ..+.. .+...++.++++.+|+.+..++.+.+|||++
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 157 (262)
T PRK09984 79 RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFT-REQKQRALQALTRVGMVHFAHQRVSTLSGGQ 157 (262)
T ss_pred hhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhccccc-HHHHHHHHHHHHHcCCHHHHhCCccccCHHH
Confidence 111122344444443222 23444443321100 00001 1122345566666777778899999999965
Q ss_pred C
Q psy15138 312 P 312 (320)
Q Consensus 312 ~ 312 (320)
.
T Consensus 158 ~ 158 (262)
T PRK09984 158 Q 158 (262)
T ss_pred H
Confidence 3
No 220
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.40 E-value=2.7e-13 Score=122.32 Aligned_cols=129 Identities=16% Similarity=0.027 Sum_probs=76.6
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch---hh
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK---HE 244 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~---~~ 244 (320)
++++++++.| +...++++++|. |++++|+||||||||||+++|+ |+++| .+|+|.+++.+.. ..
T Consensus 4 l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~-G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 78 (250)
T PRK14247 4 IEIRDLKVSF----GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFN-RLIELYPEARVSGEVYLDGQDIFKMDVI 78 (250)
T ss_pred EEEEeeEEEE----CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHh-ccCCCCCCCCCceEEEECCEECCcCCHH
Confidence 4555554433 334567777765 9999999999999999999999 99974 6999998764311 11
Q ss_pred hhcCcceeeeccccCC--ccccceeecCCC-CCC--CHHhHHHHHHHHHHHhcccCCc----cccccccccccCCCC
Q psy15138 245 MESGRTSSVGNDILGF--DSVGNVVNKPEH-GSL--DWVKICERSAKVITFIDLAGHE----RYLKTTVFGMTGHVP 312 (320)
Q Consensus 245 ~~~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~--~~~~~~~~~~~~l~~l~l~gl~----~~~~~~~~~LSG~~~ 312 (320)
.....++.++|+...+ .++.+++..... ... ...+. .+++.++++.+|+. +..++.+.+|||++.
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKEL---QERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQ 152 (250)
T ss_pred HHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHH---HHHHHHHHHHcCCCcchhhhhcCCcccCCHHHH
Confidence 1122344455543222 244444433211 111 11222 23344455555553 457889999999653
No 221
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=2.6e-13 Score=121.39 Aligned_cols=130 Identities=17% Similarity=0.090 Sum_probs=77.4
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---h-hhhc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---H-EMES 247 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~-~~~~ 247 (320)
.++++++++.| +...++++++|. |++++|+||||||||||+++|+ |+++|++|++.+++.... . ....
T Consensus 5 ~l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~p~~G~i~~~g~~~~~~~~~~~~~ 79 (237)
T PRK11614 5 MLSFDKVSAHY----GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLC-GDPRATSGRIVFDGKDITDWQTAKIMR 79 (237)
T ss_pred EEEEEeEEEee----CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHc-CCCCCCCceEEECCEecCCCCHHHHHH
Confidence 45666665544 234567777765 9999999999999999999999 999999999998764311 1 1112
Q ss_pred CcceeeeccccCC--ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 248 GRTSSVGNDILGF--DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 248 g~v~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
..++.++|+...| .++.+++....... ......+...++++.++ ++.+..++.+..|||++.
T Consensus 80 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~l~~~~--~l~~~~~~~~~~LS~G~~ 143 (237)
T PRK11614 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFA-ERDQFQERIKWVYELFP--RLHERRIQRAGTMSGGEQ 143 (237)
T ss_pred hCEEEeccCcccCCCCcHHHHHHHhhhcc-ChhHHHHHHHHHHHHHH--HHHHHHhCchhhCCHHHH
Confidence 2344444443323 23444443321111 11112222333334331 245566788999999643
No 222
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.40 E-value=2e-13 Score=121.60 Aligned_cols=119 Identities=16% Similarity=0.074 Sum_probs=71.0
Q ss_pred ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---h-hhhcCcceeeeccccCC-
Q psy15138 189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---H-EMESGRTSSVGNDILGF- 260 (320)
Q Consensus 189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~-~~~~g~v~~~~~~~~~~- 260 (320)
|+...++++++|. |++++|+||||||||||+++|+ |+++|.+|+|.+++.+.. . ......++..+|+...|
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (230)
T TIGR03410 10 YGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLM-GLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFP 88 (230)
T ss_pred eCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccC
Confidence 3334577777776 9999999999999999999999 999999999998754311 1 11112234444443222
Q ss_pred -ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 261 -DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 261 -~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.+..+++....... .. ...+...++++.++. +.+..++.+..|||++.
T Consensus 89 ~~tv~~~l~~~~~~~-~~-~~~~~~~~~l~~~~~--l~~~~~~~~~~LS~G~~ 137 (230)
T TIGR03410 89 RLTVEENLLTGLAAL-PR-RSRKIPDEIYELFPV--LKEMLGRRGGDLSGGQQ 137 (230)
T ss_pred CCcHHHHHHHHHHhc-Cc-chHHHHHHHHHHHHh--HHHHhhCChhhCCHHHH
Confidence 23344433221111 00 111222334443331 35667889999999653
No 223
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.40 E-value=5.8e-13 Score=115.81 Aligned_cols=87 Identities=26% Similarity=0.285 Sum_probs=73.8
Q ss_pred CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCC-hhHHHHH
Q psy15138 12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCP-PNVLQDT 87 (320)
Q Consensus 12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~-~~~le~~ 87 (320)
....+.|+|+|||.+|. +..+...+|.+++ ||++.+|+.+++++|+.++..+++| .++++||+|+.. .+.++..
T Consensus 63 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~il--Vvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~ 140 (195)
T cd01884 63 ANRHYAHVDCPGHADYIKNMITGAAQMDGAIL--VVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELV 140 (195)
T ss_pred CCeEEEEEECcCHHHHHHHHHHHhhhCCEEEE--EEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHH
Confidence 34568999999999999 8999999999999 9999999999999999999999997 678899999964 4445556
Q ss_pred HHHHHHhhcCCCc
Q psy15138 88 LKLLVRILKSPGC 100 (320)
Q Consensus 88 l~~~~~~l~~~~~ 100 (320)
.+++...|+..++
T Consensus 141 ~~~i~~~l~~~g~ 153 (195)
T cd01884 141 EMEVRELLSKYGF 153 (195)
T ss_pred HHHHHHHHHHhcc
Confidence 6778877765444
No 224
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.39 E-value=2.4e-13 Score=123.30 Aligned_cols=129 Identities=16% Similarity=0.019 Sum_probs=75.7
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch-----
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK----- 242 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~----- 242 (320)
+++.++++.| +...+++++++. |++++|+||||||||||+++|+ |+++| ++|+|.+++.+..
T Consensus 5 l~i~~v~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~la-Gl~~~~~~~~~~G~I~~~g~~~~~~~~~ 79 (258)
T PRK14241 5 IDVKDLNIYY----GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLN-RMHEVIPGARVEGEVLLDGEDLYGPGVD 79 (258)
T ss_pred EEEeeEEEEE----CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh-ccCCcccCCCcceEEEECCEeccccccC
Confidence 4555554443 334567777765 9999999999999999999999 99974 6999998754321
Q ss_pred hhhhcCcceeeeccccCC--ccccceeecCCC-CC-CCHHhHHHHHHHHHHHhcccCC----ccccccccccccCCCC
Q psy15138 243 HEMESGRTSSVGNDILGF--DSVGNVVNKPEH-GS-LDWVKICERSAKVITFIDLAGH----ERYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 ~~~~~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~-~~~~~~~~~~~~~l~~l~l~gl----~~~~~~~~~~LSG~~~ 312 (320)
.......++.++|....+ .++.+++..... .. .......+.+. ++++.+|+ .+..++.+.+|||++.
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~---~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 80 PVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVE---KSLRGANLWNEVKDRLDKPGGGLSGGQQ 154 (258)
T ss_pred hHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHH---HHHHHcCCchhhhhHhhCCcccCCHHHH
Confidence 111122344445443222 234444432211 11 11222222333 34444444 3567889999999653
No 225
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.39 E-value=2.2e-13 Score=123.46 Aligned_cols=130 Identities=18% Similarity=0.181 Sum_probs=77.3
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc-----ch---h
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR-----HK---H 243 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~-----~~---~ 243 (320)
+++++++.+.|. ...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+ .. .
T Consensus 6 ~l~~~~l~~~~~----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~i~~~~~ 80 (258)
T PRK11701 6 LLSVRGLTKLYG----PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALS-ARLAPDAGEVHYRMRDGQLRDLYALSE 80 (258)
T ss_pred eEEEeeeEEEcC----CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCEEEECCccccccccccCCH
Confidence 466666655442 23466666665 9999999999999999999999 9999999999987643 11 1
Q ss_pred hh----hcCcceeeecccc-C-C--ccccceeecCC--CCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138 244 EM----ESGRTSSVGNDIL-G-F--DSVGNVVNKPE--HGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP 312 (320)
Q Consensus 244 ~~----~~g~v~~~~~~~~-~-~--~~~~~~v~~~~--~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~ 312 (320)
.. ....++.++|+.. . + .+..+++.... ........ ...++.++++.+++. ...++.+..|||++.
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~ 157 (258)
T PRK11701 81 AERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGD---IRATAGDWLERVEIDAARIDDLPTTFSGGMQ 157 (258)
T ss_pred HHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHH---HHHHHHHHHHHcCCChhHHhCCCccCCHHHH
Confidence 00 1123344444421 1 1 12222222111 01011111 223445566666665 477899999999654
No 226
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.39 E-value=2.9e-13 Score=122.28 Aligned_cols=119 Identities=13% Similarity=0.146 Sum_probs=73.6
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcce
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTS 251 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~ 251 (320)
.++++++.+.| +...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.++.. ..+++++
T Consensus 4 ~l~~~~l~~~~----~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~-Gl~~p~~G~i~~~~~-----~~i~~v~ 73 (251)
T PRK09544 4 LVSLENVSVSF----GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVL-GLVAPDEGVIKRNGK-----LRIGYVP 73 (251)
T ss_pred EEEEeceEEEE----CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCc-----cCEEEec
Confidence 45555554443 334466666665 9999999999999999999999 999999999987631 1244444
Q ss_pred eeeccccCCc-cccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 252 SVGNDILGFD-SVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 252 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
|.+.....+. +..+++.. ..... .+++.++++.+|+.+..++++..|||++.
T Consensus 74 q~~~~~~~l~~~~~~~~~~--~~~~~-------~~~~~~~l~~~gl~~~~~~~~~~LSgGq~ 126 (251)
T PRK09544 74 QKLYLDTTLPLTVNRFLRL--RPGTK-------KEDILPALKRVQAGHLIDAPMQKLSGGET 126 (251)
T ss_pred cccccccccChhHHHHHhc--ccccc-------HHHHHHHHHHcCChHHHhCChhhCCHHHH
Confidence 4432111110 11111111 01111 12344556667778888899999999653
No 227
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=1.3e-13 Score=127.12 Aligned_cols=133 Identities=14% Similarity=0.113 Sum_probs=78.6
Q ss_pred eeeeecCCCeeeeec-ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch--------h
Q psy15138 176 LRQRKLDNGLTGQYL-LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK--------H 243 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~-~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~--------~ 243 (320)
++++++++.|..... ...++++++|. |++++|+||||||||||+++|+ |+++|.+|+|.+++.+.. .
T Consensus 7 l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTN-GLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred EEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCceEEECCEEccccccccccH
Confidence 455655544422100 12366777665 9999999999999999999999 999999999988754311 1
Q ss_pred hhhcCcceeeecccc--CC-ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCC-ccccccccccccCCCC
Q psy15138 244 EMESGRTSSVGNDIL--GF-DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGH-ERYLKTTVFGMTGHVP 312 (320)
Q Consensus 244 ~~~~g~v~~~~~~~~--~~-~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl-~~~~~~~~~~LSG~~~ 312 (320)
......++.++|... .+ .+..+++..... ........ ..++.++++.+++ .++.++.+..|||++.
T Consensus 86 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~---~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~ 156 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEA---YKKVPELLKLVQLPEDYVKRSPFELSGGQK 156 (289)
T ss_pred HHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHcCCChhHhcCChhhCCHHHH
Confidence 111233455555431 11 244444433211 11122222 2233445556666 3578899999999654
No 228
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.39 E-value=3.5e-13 Score=129.91 Aligned_cols=88 Identities=27% Similarity=0.318 Sum_probs=74.1
Q ss_pred CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCC--hhHHHH
Q psy15138 12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCP--PNVLQD 86 (320)
Q Consensus 12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~--~~~le~ 86 (320)
.+..+.|+|+|||++|+ |+.|...+|.+++ ||+|++|+++||++|+.+++.+++| +++++||+|+.+ .+++++
T Consensus 78 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~all--VVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 78 DKRKFIVADTPGHEQYTRNMATGASTADLAVL--LVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEE--EEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHH
Confidence 45578999999999998 9999999999999 9999999999999999999999995 677999999964 556666
Q ss_pred HHHHHHHhhcCCCcc
Q psy15138 87 TLKLLVRILKSPGCR 101 (320)
Q Consensus 87 ~l~~~~~~l~~~~~~ 101 (320)
..+++..++...++.
T Consensus 156 i~~~~~~~~~~~~~~ 170 (406)
T TIGR02034 156 IKKDYLAFAEQLGFR 170 (406)
T ss_pred HHHHHHHHHHHcCCC
Confidence 777776665443343
No 229
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.39 E-value=2.1e-13 Score=121.97 Aligned_cols=114 Identities=17% Similarity=0.167 Sum_probs=72.4
Q ss_pred ccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcceeeeccccCC--cccccee
Q psy15138 194 RVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTSSVGNDILGF--DSVGNVV 267 (320)
Q Consensus 194 ~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~~~--~~~~~~v 267 (320)
.++++++. |++++|+||||||||||+++|+ |+++|++|++.+++.+... ......++.++|+...| .+..+++
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~-G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l 92 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIA-GFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNI 92 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh-CCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHH
Confidence 46666665 9999999999999999999999 9999999999987643211 11122344445443322 2333333
Q ss_pred ecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 268 NKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 268 ~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
..... ....... ..+++.++++.+|+.+..++.+..|||++
T Consensus 93 ~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 134 (235)
T cd03299 93 AYGLKKRKVDKKE---IERKVLEIAEMLGIDHLLNRKPETLSGGE 134 (235)
T ss_pred HHHHHHcCCCHHH---HHHHHHHHHHHcCChhHHhcCcccCCHHH
Confidence 32211 1111111 22344456666777888899999999854
No 230
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.39 E-value=1.1e-13 Score=122.79 Aligned_cols=118 Identities=20% Similarity=0.075 Sum_probs=76.3
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-----hhhcCcce-eeeccccCCcc
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-----EMESGRTS-SVGNDILGFDS 262 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-----~~~~g~v~-~~~~~~~~~~~ 262 (320)
..++.+++|. |++++++|||||||||+||+|+ |++.|++|.+++++...-. ...++++. |..|..|.++.
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLT-Gll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLT-GLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHh-CccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechh
Confidence 3466777775 9999999999999999999999 9999999999998654211 22334433 33333343332
Q ss_pred ccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCCC
Q psy15138 263 VGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPD 313 (320)
Q Consensus 263 ~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~ 313 (320)
..........-.++.....++...+.++++ ++.+++.+.+.||-++..
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLd---l~~~lk~~vr~LSlGqRm 163 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLDFLTEILD---LEGFLKWPVRKLSLGQRM 163 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHHhc---chhhhhhhhhhccchHHH
Confidence 111111111123344555555555555555 488899999999987653
No 231
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.39 E-value=7.4e-13 Score=119.64 Aligned_cols=132 Identities=18% Similarity=0.081 Sum_probs=78.3
Q ss_pred eeeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeeccccch--
Q psy15138 173 CVLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFRHK-- 242 (320)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~~~-- 242 (320)
++.++++++++.|. ...++++++|. |++++|+||||||||||+++|+ |+++ |++|+|.+++.+..
T Consensus 4 ~~~l~~~~l~~~~~----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~~~~G~i~~~g~~i~~~ 78 (253)
T PRK14242 4 PPKMEARGLSFFYG----DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLN-RMNDLIPGARVEGEILLDGENIYDP 78 (253)
T ss_pred CcEEEEeeeEEEEC----CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHH-hhcccCCCCCCceEEEECCEEcccc
Confidence 45677777665542 24567777775 9999999999999999999999 9864 58999998764321
Q ss_pred ---hhhhcCcceeeeccccCC-ccccceeecCCC-CCC-CHHhHHHHHHHHHHHhcccCC----ccccccccccccCCCC
Q psy15138 243 ---HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLAGH----ERYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 ---~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~gl----~~~~~~~~~~LSG~~~ 312 (320)
.......++.++|+...| .++.+++..... ... ......+ ++.++++.+|+ .+..++.+..|||++.
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 79 HVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAE---RVERSLRHAALWDEVKDRLHESALGLSGGQQ 155 (253)
T ss_pred ccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHH---HHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence 111122344445543222 244444433211 111 1112222 33344444454 2356788999999653
No 232
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.39 E-value=2.8e-13 Score=122.41 Aligned_cols=133 Identities=17% Similarity=0.030 Sum_probs=76.8
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCC-----Cceeeeccccch----
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNG-----RGHARQKLFRHK---- 242 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~-----~G~i~~~~~~~~---- 242 (320)
.++++++++.| +...++++++|. |++++|+||||||||||+++|+ |+++|+ +|+|.+++.+..
T Consensus 4 ~l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~-G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (253)
T PRK14267 4 AIETVNLRVYY----GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFN-RLLELNEEARVEGEVRLFGRNIYSPDV 78 (253)
T ss_pred eEEEEeEEEEe----CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHh-ccCCcccCCCCceEEEECCEEcccccc
Confidence 35566555444 334567777775 9999999999999999999999 999874 999998754321
Q ss_pred -hhhhcCcceeeeccccCC--ccccceeecCCC-CCC--CHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138 243 -HEMESGRTSSVGNDILGF--DSVGNVVNKPEH-GSL--DWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 -~~~~~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~--~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~ 312 (320)
.......++.++|+...+ .++.+++..... ... ......+...++++.+++. .+.+..++.+..|||++.
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 155 (253)
T PRK14267 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQR 155 (253)
T ss_pred ChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHH
Confidence 111122344445543322 234444433211 111 1122222333444433331 113457888999999653
No 233
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.38 E-value=3.5e-13 Score=119.50 Aligned_cols=116 Identities=17% Similarity=0.087 Sum_probs=69.4
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc----cc----hh---hhhcCcceeeecccc
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF----RH----KH---EMESGRTSSVGNDIL 258 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~----~~----~~---~~~~g~v~~~~~~~~ 258 (320)
.++++++|. |++++|+||||||||||+++|+ |+++|++|+|.++.. +. .. +.....++.++|+..
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~-G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 100 (224)
T TIGR02324 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLY-ANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR 100 (224)
T ss_pred EEEecceEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccc
Confidence 466777665 9999999999999999999999 999999999998631 11 00 011122344444432
Q ss_pred CC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCcc-ccccccccccCCCC
Q psy15138 259 GF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHER-YLKTTVFGMTGHVP 312 (320)
Q Consensus 259 ~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~-~~~~~~~~LSG~~~ 312 (320)
.+ .++.+++..... ........ .+++.++++.+|+.+ ..++++.+|||++.
T Consensus 101 ~~~~~tv~e~l~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~ 155 (224)
T TIGR02324 101 VIPRVSALEVVAEPLLERGVPREAA---RARARELLARLNIPERLWHLPPATFSGGEQ 155 (224)
T ss_pred cCCCccHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHcCCchhhhhCCcccCCHHHH
Confidence 22 233333332111 11111122 233445556666665 35778999999653
No 234
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.38 E-value=2.7e-13 Score=120.43 Aligned_cols=134 Identities=16% Similarity=0.163 Sum_probs=78.2
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g 248 (320)
.++++++...|.... ...+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.... ......
T Consensus 11 ~l~~~~l~~~~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 11 IVKFQNVTFAYPTRP-DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLE-NFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred eEEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 455666555443210 12366666665 9999999999999999999999 999999999998754311 111122
Q ss_pred cceeeeccccCC-ccccceeecCCCCCCCHHhHHHH--HHHHHHHhccc--CCccccccccccccCCC
Q psy15138 249 RTSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICER--SAKVITFIDLA--GHERYLKTTVFGMTGHV 311 (320)
Q Consensus 249 ~v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~--~~~~l~~l~l~--gl~~~~~~~~~~LSG~~ 311 (320)
.++.++|....| .++.+++...... .......+. ...+.++++.+ |+....++.+.+|||++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~ 155 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQS-CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQ 155 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCC-CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHH
Confidence 334444443222 2444444432221 111111111 11123444444 67777888999999954
No 235
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.38 E-value=4.1e-13 Score=132.58 Aligned_cols=130 Identities=15% Similarity=0.067 Sum_probs=76.1
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hh--h
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HE--M 245 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~--~ 245 (320)
.++++++++.| +...+++++++. |++++|+||||||||||+|+|+ |+++|++|+|.+.+.+.. .. .
T Consensus 3 ~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~-G~~~p~~G~i~~~~~~~~~~~~~~~~~ 77 (490)
T PRK10938 3 SLQISQGTFRL----SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALA-GELPLLSGERQSQFSHITRLSFEQLQK 77 (490)
T ss_pred eEEEEeEEEEc----CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHh-ccCCCCCceEEECCcccccCCHHHHHH
Confidence 35566555444 334577887775 9999999999999999999999 999999999987643211 11 1
Q ss_pred hcCcceeeeccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 246 ESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 246 ~~g~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
..++++|.+...+ +....+............. .+..+++.++++.+|+.++.++++++|||++.
T Consensus 78 ~i~~~~q~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 141 (490)
T PRK10938 78 LVSDEWQRNNTDM-LSPGEDDTGRTTAEIIQDE--VKDPARCEQLAQQFGITALLDRRFKYLSTGET 141 (490)
T ss_pred HhceeccCcchhh-cccchhhccccHHHhcccc--hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHH
Confidence 2344443321101 1110000000000000000 01123344566667778888999999999753
No 236
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.38 E-value=3.2e-13 Score=122.14 Aligned_cols=133 Identities=17% Similarity=0.052 Sum_probs=78.1
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch----
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK---- 242 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~---- 242 (320)
.++++++++.| +...++++++|. |++++|+||||||||||+++|+ |+++| ++|+|.+++.+..
T Consensus 7 ~l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (254)
T PRK14273 7 IIETENLNLFY----TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLN-RMNDLVEGIKIEGNVIYEGKNIYSNNF 81 (254)
T ss_pred eEEEeeeEEEe----CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHh-ccccCCcCCCCceEEEECCEecccccc
Confidence 56666665544 234567777775 9999999999999999999999 99987 4899998754311
Q ss_pred -hhhhcCcceeeeccccCC-ccccceeecCCC-CC-CCHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138 243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GS-LDWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~-~~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~ 312 (320)
.......++.++|+...+ .++.+++..... .. .......+...++++.+++. .+.+..++.+..|||++.
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~ 156 (254)
T PRK14273 82 DILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQ 156 (254)
T ss_pred cHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHH
Confidence 111123344445543222 344454443221 11 11112222333333333331 124567888999999653
No 237
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.38 E-value=4.2e-13 Score=120.82 Aligned_cols=122 Identities=17% Similarity=0.104 Sum_probs=70.8
Q ss_pred ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC---CCCceeeeccccch---hhhhcCcceeeeccccC
Q psy15138 189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD---NGRGHARQKLFRHK---HEMESGRTSSVGNDILG 259 (320)
Q Consensus 189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~---~~~G~i~~~~~~~~---~~~~~g~v~~~~~~~~~ 259 (320)
|+....++++++. |++++|+||||||||||+++|+ |+++ |.+|+|.+++.+.. .......++.++|+...
T Consensus 12 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l 90 (246)
T PRK14269 12 YGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFN-RMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNV 90 (246)
T ss_pred ECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcc
Confidence 3334567777775 9999999999999999999999 9974 68999998764321 11112233444444322
Q ss_pred C-ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCc----cccccccccccCCCC
Q psy15138 260 F-DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHE----RYLKTTVFGMTGHVP 312 (320)
Q Consensus 260 ~-~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~----~~~~~~~~~LSG~~~ 312 (320)
| .+..+++..... ..... .......++.++++.+++. +..++.+..|||++.
T Consensus 91 ~~~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 148 (246)
T PRK14269 91 FVKSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQ 148 (246)
T ss_pred ccccHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHH
Confidence 2 244444433211 11100 0011122333445555553 456788899999643
No 238
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.38 E-value=5.8e-13 Score=128.78 Aligned_cols=130 Identities=18% Similarity=0.145 Sum_probs=89.3
Q ss_pred eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc----chhhhh
Q psy15138 174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR----HKHEME 246 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~----~~~~~~ 246 (320)
.++++++ .++.|+..++|++++|. ||++||+|.||||||||+|+|+ |.++|++|+|.+++.. ...+..
T Consensus 7 ~ll~~~~----i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLs-Gv~~p~~G~I~~~G~~~~~~sp~~A~ 81 (500)
T COG1129 7 PLLELRG----ISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILS-GVYPPDSGEILIDGKPVAFSSPRDAL 81 (500)
T ss_pred ceeeeec----ceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHh-CcccCCCceEEECCEEccCCCHHHHH
Confidence 3555554 45667778899999887 9999999999999999999999 9999999999998654 222333
Q ss_pred cCcceeeeccccCC--ccccceeecCCCC-----CCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 247 SGRTSSVGNDILGF--DSVGNVVNKPEHG-----SLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 247 ~g~v~~~~~~~~~~--~~~~~~v~~~~~~-----~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
..-+..++|+...+ .++.+|++.+... .+.+....+++.+++..++. ....++.+..||..+
T Consensus 82 ~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~---~~~~~~~v~~Lsiaq 150 (500)
T COG1129 82 AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGL---DIDPDTLVGDLSIAQ 150 (500)
T ss_pred hCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCC---CCChhhhhhhCCHHH
Confidence 34456666665443 3555666554331 23445555555555554443 223788888888754
No 239
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.38 E-value=3.4e-13 Score=122.93 Aligned_cols=131 Identities=20% Similarity=0.097 Sum_probs=78.7
Q ss_pred eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch---
Q psy15138 174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK--- 242 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~--- 242 (320)
..++++++++.|. ...+++++++. |++++|+||||||||||+++|+ |+++| .+|+|.+++.+..
T Consensus 18 ~~l~~~nl~~~~~----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 18 IKMRARDVSVFYG----EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLN-RMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred ceEEEEeEEEEEC----CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHH-hhcccccCCCCceEEEECCEECcccc
Confidence 4677777765553 34466666665 9999999999999999999999 99975 8999998764321
Q ss_pred --hhhhcCcceeeeccccCC-ccccceeecCCC-CCC--CHHhHHHHHHHHHHHhcccCCc----cccccccccccCCCC
Q psy15138 243 --HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSL--DWVKICERSAKVITFIDLAGHE----RYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 --~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~--~~~~~~~~~~~~l~~l~l~gl~----~~~~~~~~~LSG~~~ 312 (320)
.......++.++|....+ .++.+++..... ... ...... .++.++++.+|+. +..++.+..|||++.
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 169 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELD---EIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQ 169 (267)
T ss_pred cchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHH---HHHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence 111123344555543322 244444433211 111 111222 2334445555553 356788999999653
No 240
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.38 E-value=3e-13 Score=116.10 Aligned_cols=50 Identities=30% Similarity=0.290 Sum_probs=42.3
Q ss_pred ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138 189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF 239 (320)
Q Consensus 189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~ 239 (320)
|+...+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.
T Consensus 9 ~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~-G~~~~~~G~v~~~g~ 61 (180)
T cd03214 9 YGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLA-GLLKPSSGEILLDGK 61 (180)
T ss_pred ECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCE
Confidence 3334466666665 9999999999999999999999 999999999998743
No 241
>PLN03127 Elongation factor Tu; Provisional
Probab=99.38 E-value=4.9e-13 Score=130.00 Aligned_cols=85 Identities=27% Similarity=0.281 Sum_probs=71.1
Q ss_pred CCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCChh-HHHH
Q psy15138 11 TAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCPPN-VLQD 86 (320)
Q Consensus 11 ~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~~~-~le~ 86 (320)
|++..+.|+|+|||++|+ |+.|+..+|.+++ ||++++|+++||++|+.+++.+++| .++++||+|+.+.+ .++.
T Consensus 121 ~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~all--VVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~ 198 (447)
T PLN03127 121 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGIL--VVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLEL 198 (447)
T ss_pred CCCeEEEEEECCCccchHHHHHHHHhhCCEEEE--EEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHH
Confidence 344568999999999999 9999999999999 9999999999999999999999998 56889999998543 4444
Q ss_pred HHHHHHHhhcC
Q psy15138 87 TLKLLVRILKS 97 (320)
Q Consensus 87 ~l~~~~~~l~~ 97 (320)
+.+++.+.+..
T Consensus 199 i~~~i~~~l~~ 209 (447)
T PLN03127 199 VEMELRELLSF 209 (447)
T ss_pred HHHHHHHHHHH
Confidence 44566666543
No 242
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.38 E-value=3.9e-13 Score=133.95 Aligned_cols=134 Identities=15% Similarity=0.154 Sum_probs=78.3
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch----
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK---- 242 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~---- 242 (320)
+++++++++.|........++++++|. |++++|+||||||||||+++|+ |+++| ++|+|.+++.+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~-G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSIL-RLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHh-cCCCCCcCCccceEEEECCEecccCCH
Confidence 456665555442110124577777776 9999999999999999999999 99986 7999998754311
Q ss_pred h---hhhcCcceeeecccc----CCccccceeecCC--CCCCCHHhHHHHHHHHHHHhcccCCcc---ccccccccccCC
Q psy15138 243 H---EMESGRTSSVGNDIL----GFDSVGNVVNKPE--HGSLDWVKICERSAKVITFIDLAGHER---YLKTTVFGMTGH 310 (320)
Q Consensus 243 ~---~~~~g~v~~~~~~~~----~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~l~~l~l~gl~~---~~~~~~~~LSG~ 310 (320)
. ..+...++.++|+.. ...+..+++.... ..........++ +.++++.+|+.+ ..++++.+|||+
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~gl~~~~~~~~~~~~~LSgG 160 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGE---ILNCLDRVGIRQAAKRLTDYPHQLSGG 160 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHH---HHHHHHHCCCCChHHHHhhCCcccCHH
Confidence 1 011123444555421 1123333332211 111222222233 344455555544 568899999996
Q ss_pred CC
Q psy15138 311 VP 312 (320)
Q Consensus 311 ~~ 312 (320)
+.
T Consensus 161 e~ 162 (529)
T PRK15134 161 ER 162 (529)
T ss_pred HH
Confidence 54
No 243
>KOG0058|consensus
Probab=99.38 E-value=8.7e-13 Score=130.73 Aligned_cols=134 Identities=17% Similarity=0.133 Sum_probs=89.7
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc---chhhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR---HKHEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~---~~~~~~~g 248 (320)
.++|++++|.|..+. ...++++.+|. |+.+|+|||||+||||+.++|. .+++|++|+|.+++.+ ..|.-.+.
T Consensus 465 ~IeF~~VsFaYP~Rp-~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~-rfY~PtsG~IllDG~~i~~~~~~~lr~ 542 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRP-DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLL-RFYDPTSGRILLDGVPISDINHKYLRR 542 (716)
T ss_pred eEEEEEeeeecCCCC-CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHH-HhcCCCCCeEEECCeehhhcCHHHHHH
Confidence 578899998886543 35566777665 9999999999999999999999 9999999999998654 22333335
Q ss_pred cceeeeccccCC-ccccceeecCCCCCCCHHhHHHHH--HHHHHHhccc--CCccccccccccccCCC
Q psy15138 249 RTSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICERS--AKVITFIDLA--GHERYLKTTVFGMTGHV 311 (320)
Q Consensus 249 ~v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~--~~~l~~l~l~--gl~~~~~~~~~~LSG~~ 311 (320)
.++.+.|++..| .+..+|+.++.. ....+++...+ ..+.+++... |..-.....-.+|||++
T Consensus 543 ~Ig~V~QEPvLFs~sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQ 609 (716)
T KOG0058|consen 543 KIGLVGQEPVLFSGSIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQ 609 (716)
T ss_pred HeeeeeccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchH
Confidence 556666666665 567888888776 33444433221 2222333221 22223344456899975
No 244
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.37 E-value=8.1e-13 Score=126.98 Aligned_cols=87 Identities=23% Similarity=0.236 Sum_probs=72.6
Q ss_pred CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcE-EEEeCCCCCCh-hHHHHH
Q psy15138 12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVF-VVVTKIDMCPP-NVLQDT 87 (320)
Q Consensus 12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~-v~lnk~Dl~~~-~~le~~ 87 (320)
....+.|+|+|||++|+ |+.+++++|.+++ |+++++|+.++|++|+.++..+++|.+ +++||+|+.+. +..+..
T Consensus 73 ~~~~~~liDtpGh~~f~~~~~~~~~~~D~~il--Vvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~ 150 (394)
T TIGR00485 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAIL--VVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELV 150 (394)
T ss_pred CCEEEEEEECCchHHHHHHHHHHHhhCCEEEE--EEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHH
Confidence 34568999999999999 9999999999999 999999999999999999999999865 68999999864 345545
Q ss_pred HHHHHHhhcCCCc
Q psy15138 88 LKLLVRILKSPGC 100 (320)
Q Consensus 88 l~~~~~~l~~~~~ 100 (320)
.+++...+....+
T Consensus 151 ~~~i~~~l~~~~~ 163 (394)
T TIGR00485 151 EMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHHhcCC
Confidence 5677776665443
No 245
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.37 E-value=5.5e-13 Score=117.49 Aligned_cols=104 Identities=19% Similarity=0.092 Sum_probs=66.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-------hhhhcCcceeeeccccCC--ccccceeecCCCC
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-------HEMESGRTSSVGNDILGF--DSVGNVVNKPEHG 273 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-------~~~~~g~v~~~~~~~~~~--~~~~~~v~~~~~~ 273 (320)
++++|+||||||||||+++|+ |+++|++|++.+++.+.. .......++.++|+...+ .+..+++......
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~ 102 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIA-GLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKR 102 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhh
Confidence 889999999999999999999 999999999988754311 001122344445543322 2334443322111
Q ss_pred CCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 274 SLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 274 ~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
.... ....++.++++.+|+.+..++.+..|||++
T Consensus 103 -~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 136 (214)
T cd03297 103 -KRNR---EDRISVDELLDLLGLDHLLNRYPAQLSGGE 136 (214)
T ss_pred -CCHH---HHHHHHHHHHHHcCCHhHhhcCcccCCHHH
Confidence 1111 122344556666777878899999999964
No 246
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.37 E-value=5.8e-13 Score=119.47 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=70.9
Q ss_pred eecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcC--CCCCceeeeccccch---h-hhhcCcceeeecccc
Q psy15138 188 QYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGEL--DNGRGHARQKLFRHK---H-EMESGRTSSVGNDIL 258 (320)
Q Consensus 188 ~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l--~~~~G~i~~~~~~~~---~-~~~~g~v~~~~~~~~ 258 (320)
.|+...+++++++. |++++|+||||||||||+++|+ |++ +|++|+|.+++.+.. . ......++.++|+..
T Consensus 9 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 87 (243)
T TIGR01978 9 SVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIA-GHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPE 87 (243)
T ss_pred EECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCcceEEECCEecCCCCHHHhhccceEeeecccc
Confidence 33344567777775 9999999999999999999999 995 799999998764311 1 111112334444432
Q ss_pred CCc--cccceeecCCC--CCC---CHHhHHHHHHHHHHHhcccCCc-cccccccc-cccCCCC
Q psy15138 259 GFD--SVGNVVNKPEH--GSL---DWVKICERSAKVITFIDLAGHE-RYLKTTVF-GMTGHVP 312 (320)
Q Consensus 259 ~~~--~~~~~v~~~~~--~~~---~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~-~LSG~~~ 312 (320)
.+. +..+++..... ... ......+..+++.++++.+|+. +..++.+. .|||++.
T Consensus 88 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 88 EIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred ccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHH
Confidence 221 22333222110 000 0001111223445566666775 45677776 5999653
No 247
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.37 E-value=7.9e-13 Score=109.87 Aligned_cols=134 Identities=18% Similarity=0.122 Sum_probs=89.8
Q ss_pred eeeeeecCCCeeeeec---ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc--------
Q psy15138 175 LLRQRKLDNGLTGQYL---LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR-------- 240 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~---~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~-------- 240 (320)
.+.++++++.++.... ..+++.+++|. ||++++=||||||||||||+|. +.+.|++|.|.+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LY-aNY~~d~G~I~v~H~g~~vdl~~a 82 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLY-ANYLPDEGQILVRHEGEWVDLVTA 82 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHH-hccCCCCceEEEEeCcchhhhhcc
Confidence 3556666666654331 35678888886 9999999999999999999999 9999999999886221
Q ss_pred c------hhhhhcCcceeeeccccCCccccceeecC-CCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 241 H------KHEMESGRTSSVGNDILGFDSVGNVVNKP-EHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 241 ~------~~~~~~g~v~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
. .+...+||++|..+-...... .+++..+ ............++..++..+++. ++...-.|...||+..
T Consensus 83 ~pr~vl~vRr~TiGyVSQFLRviPRV~a-LdVvaePll~~gv~~~~a~~~a~~Ll~rLnlp--erLW~LaPaTFSGGEq 158 (235)
T COG4778 83 EPREVLEVRRTTIGYVSQFLRVIPRVSA-LDVVAEPLLARGVPREVARAKAADLLTRLNLP--ERLWSLAPATFSGGEQ 158 (235)
T ss_pred ChHHHHHHHHhhhHHHHHHHHhccCcch-HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCC--HHHhcCCCcccCCchh
Confidence 1 122346888887665544322 2333333 234555555556666666666653 3455667899999654
No 248
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.37 E-value=3.5e-13 Score=121.77 Aligned_cols=59 Identities=31% Similarity=0.358 Sum_probs=47.1
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF 239 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~ 239 (320)
++++++++.| +...+++++++. |++++|+||||||||||+++|+ |+++|.+|+|.+++.
T Consensus 4 l~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~ 65 (253)
T TIGR02323 4 LQVSGLSKSY----GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLA-GRLAPDHGTATYIMR 65 (253)
T ss_pred EEEeeeEEEe----CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEEecc
Confidence 4555554443 333456777765 9999999999999999999999 999999999998753
No 249
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.36 E-value=6.2e-13 Score=118.94 Aligned_cols=118 Identities=16% Similarity=0.162 Sum_probs=69.0
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCcceeeeccccCC-ccccc
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGRTSSVGNDILGF-DSVGN 265 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~v~~~~~~~~~~-~~~~~ 265 (320)
.+++++++. |++++|+||||||||||+++|+ |+++|.+|+|.+++.+.. .......++.++|+...+ .++.+
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~ 94 (237)
T cd03252 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQ-RFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRD 94 (237)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHH
Confidence 356666665 9999999999999999999999 999999999998764321 111122344444443222 24444
Q ss_pred eeecCCCCCCCHHhHHHHH--HHHHHHhccc--CCccccccccccccCCCC
Q psy15138 266 VVNKPEHGSLDWVKICERS--AKVITFIDLA--GHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 266 ~v~~~~~~~~~~~~~~~~~--~~~l~~l~l~--gl~~~~~~~~~~LSG~~~ 312 (320)
++..... ........+.. ..+.++++.. ++....+..+..|||++.
T Consensus 95 nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~ 144 (237)
T cd03252 95 NIALADP-GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQR 144 (237)
T ss_pred HhhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHH
Confidence 4443221 11111111111 1112233332 445566788999999653
No 250
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.36 E-value=5.6e-13 Score=118.93 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=69.3
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCcceeeeccccCC-ccccc
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGRTSSVGNDILGF-DSVGN 265 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~v~~~~~~~~~~-~~~~~ 265 (320)
.++++++|. |++++|+||||||||||+++|+ |+++|++|++.+++.... .......++..+|+...+ .++.+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 94 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP-RFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAE 94 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh-ccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHH
Confidence 456666665 9999999999999999999999 999999999998754311 111122334444443222 24444
Q ss_pred eeecCCCCCCCHHhHHHH--HHHHHHHhccc--CCccccccccccccCCCC
Q psy15138 266 VVNKPEHGSLDWVKICER--SAKVITFIDLA--GHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 266 ~v~~~~~~~~~~~~~~~~--~~~~l~~l~l~--gl~~~~~~~~~~LSG~~~ 312 (320)
++...... .......+. ...+.++++.. ++....++.+..|||++.
T Consensus 95 nl~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~ 144 (234)
T cd03251 95 NIAYGRPG-ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQR 144 (234)
T ss_pred HhhccCCC-CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHH
Confidence 44332221 111111111 11122333333 556667788999999653
No 251
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.36 E-value=5.8e-13 Score=120.22 Aligned_cols=133 Identities=16% Similarity=0.065 Sum_probs=76.4
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccchh---
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHKH--- 243 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~~--- 243 (320)
.+++++++..|. ...+++++++. |++++|+||||||||||+++|+ |+++| .+|+|.+++.+...
T Consensus 4 ~l~~~~l~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (251)
T PRK14270 4 KMESKNLNLWYG----EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLN-RMNDLISNVKIEGEVLLDGKNIYDKDV 78 (251)
T ss_pred EEEEEEeEEEEC----CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHH-hccCcccCCCCccEEEECCEecccccc
Confidence 455666554442 34466776665 9999999999999999999999 99875 78999987543210
Q ss_pred --hhhcCcceeeeccccCC-ccccceeecCCC-CCC-CHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138 244 --EMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 244 --~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~ 312 (320)
......++.++|+...+ .+..+++..... ... ......+...++++.+++. ++.+..++.+..|||++.
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 79 DVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQ 153 (251)
T ss_pred cHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHH
Confidence 11122344444443222 233444432211 111 1112222333444444432 224567888999999653
No 252
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.36 E-value=3.5e-13 Score=117.11 Aligned_cols=103 Identities=12% Similarity=0.024 Sum_probs=63.1
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcCcceeeeccccCCccccceeecCCCCCCCHH
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWV 278 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 278 (320)
.|++++|+||||||||||+++|+ |+++|++|++.+++.+... ....+++++.+.. +...++.+++....... .
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~-~~~~tv~~~l~~~~~~~-~-- 99 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIA-GIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGL-KLEMTVFENLKFWSEIY-N-- 99 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEECCcccChhhhhhEEeccCCcCC-CccCCHHHHHHHHHHhc-c--
Confidence 39999999999999999999999 9999999999987643211 1113333332211 11123333332211000 0
Q ss_pred hHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 279 KICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 279 ~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
..+++.++++.+++.+..++.+..|||++.
T Consensus 100 ----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 129 (195)
T PRK13541 100 ----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQ 129 (195)
T ss_pred ----cHHHHHHHHHHcCCHhhhccChhhCCHHHH
Confidence 112333455556667778889999999653
No 253
>PRK13409 putative ATPase RIL; Provisional
Probab=99.36 E-value=3.3e-12 Score=128.37 Aligned_cols=118 Identities=18% Similarity=0.168 Sum_probs=74.1
Q ss_pred eeeeeeecCCCeeeeecceeccccCCc---cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcc
Q psy15138 174 VLLRQRKLDNGLTGQYLLRKRVESQDF---LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRT 250 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~---~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v 250 (320)
.+++++++++.|. .. .++.+++ .|++++|+||||||||||+++|+ |+++|++|+|.++ ..++++
T Consensus 339 ~~l~~~~ls~~~~----~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~-Gl~~p~~G~I~~~-------~~i~y~ 405 (590)
T PRK13409 339 TLVEYPDLTKKLG----DF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLA-GVLKPDEGEVDPE-------LKISYK 405 (590)
T ss_pred eEEEEcceEEEEC----CE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEEe-------eeEEEe
Confidence 3566766655442 11 2444444 39999999999999999999999 9999999999874 124555
Q ss_pred eeeeccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 251 SSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 251 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
+|....... .++.+++..... ... .. ..+.++++.+++.+..++++..|||++.
T Consensus 406 ~Q~~~~~~~-~tv~e~l~~~~~-~~~---~~---~~~~~~L~~l~l~~~~~~~~~~LSGGe~ 459 (590)
T PRK13409 406 PQYIKPDYD-GTVEDLLRSITD-DLG---SS---YYKSEIIKPLQLERLLDKNVKDLSGGEL 459 (590)
T ss_pred cccccCCCC-CcHHHHHHHHhh-hcC---hH---HHHHHHHHHCCCHHHHhCCcccCCHHHH
Confidence 554322111 233333332211 111 01 1233455666777888999999999753
No 254
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.36 E-value=5.4e-13 Score=120.97 Aligned_cols=133 Identities=14% Similarity=0.034 Sum_probs=77.1
Q ss_pred eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch---
Q psy15138 174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK--- 242 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~--- 242 (320)
..++++++.+.| +...++++++|. |++++|+||||||||||+++|+ |+++| ++|+|.+++....
T Consensus 11 ~~l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~-Gl~~~~~~~~~~G~i~~~g~~i~~~~ 85 (258)
T PRK14268 11 PQIKVENLNLWY----GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLN-RMNDLIKNCRIEGKVSIEGEDIYEPD 85 (258)
T ss_pred eeEEEeeeEEEe----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCcccCCCcceEEEECCEEccccc
Confidence 356666665544 334567777765 9999999999999999999999 99975 7999998754311
Q ss_pred --hhhhcCcceeeeccccCC-ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccC-CccccccccccccCCC
Q psy15138 243 --HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAG-HERYLKTTVFGMTGHV 311 (320)
Q Consensus 243 --~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~g-l~~~~~~~~~~LSG~~ 311 (320)
.......++.++|....+ .+..+++..... .........+...++++.+++.+ +.+..++.+..|||++
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 159 (258)
T PRK14268 86 VDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQ 159 (258)
T ss_pred chHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHH
Confidence 111122344445543222 244444433211 11122222222333444433321 1355788899999964
No 255
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=7.1e-13 Score=121.98 Aligned_cols=129 Identities=17% Similarity=0.095 Sum_probs=77.7
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeeccccch----
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFRHK---- 242 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~~~---- 242 (320)
.++++++.+.| ....++++++|. |++++|+||||||||||+++|+ |+++ |++|+|.+++.+..
T Consensus 39 ~l~i~~l~~~~----~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~-Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 39 VIEARDLNVFY----GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCIN-RMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred eEEEEEEEEEE----CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-ccCCcccCCCCceEEEECCEEcccccc
Confidence 46666665444 334567777765 9999999999999999999999 9987 68999998754321
Q ss_pred -hhhhcCcceeeeccccCC-ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCC----ccccccccccccCCCC
Q psy15138 243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGH----ERYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl----~~~~~~~~~~LSG~~~ 312 (320)
.......++.++|+...| .++.+++..... ..... ... .++.++++.+|+ .+..++.+..|||++.
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~-~~~---~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~ 186 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDG-DID---ERVEESLRRAALWDEVKDQLDSSGLDLSGGQQ 186 (285)
T ss_pred chHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcH-HHH---HHHHHHHHHcCCCchhHHHHhCCcccCCHHHH
Confidence 111123445555553322 233444332211 11111 122 233444445554 3467889999999653
No 256
>KOG0057|consensus
Probab=99.35 E-value=6e-13 Score=127.95 Aligned_cols=93 Identities=22% Similarity=0.168 Sum_probs=70.8
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g 248 (320)
.++++++.+.|.. .+++++.++|+ |+++||+|+|||||||++|+|. ++++ .+|+|.+++.+. ..+..++
T Consensus 351 ~I~F~dV~f~y~~---k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~Ll-rF~d-~sG~I~IdG~dik~~~~~SlR~ 425 (591)
T KOG0057|consen 351 SIEFDDVHFSYGP---KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLL-RFFD-YSGSILIDGQDIKEVSLESLRQ 425 (591)
T ss_pred cEEEEeeEEEeCC---CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHH-HHhc-cCCcEEECCeeHhhhChHHhhh
Confidence 4677777766643 34577777775 9999999999999999999999 9999 999999997662 2334456
Q ss_pred cceeeeccccCC-ccccceeecCCC
Q psy15138 249 RTSSVGNDILGF-DSVGNVVNKPEH 272 (320)
Q Consensus 249 ~v~~~~~~~~~~-~~~~~~v~~~~~ 272 (320)
.++.+||+-..| ++...++.++..
T Consensus 426 ~Ig~VPQd~~LFndTIl~NI~YGn~ 450 (591)
T KOG0057|consen 426 SIGVVPQDSVLFNDTILYNIKYGNP 450 (591)
T ss_pred heeEeCCcccccchhHHHHhhcCCC
Confidence 667777776665 567777777654
No 257
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.35 E-value=1.5e-12 Score=106.15 Aligned_cols=110 Identities=20% Similarity=0.147 Sum_probs=74.3
Q ss_pred CccCcEEEEEcCCCChHHHHHHHHhcCcCCCC---Cceeeeccccc-hhhhhcCcceeeeccccCCc--cccceeecCCC
Q psy15138 199 DFLEIRVAVVGNVDAGKSTLLGVLTHGELDNG---RGHARQKLFRH-KHEMESGRTSSVGNDILGFD--SVGNVVNKPEH 272 (320)
Q Consensus 199 ~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~---~G~i~~~~~~~-~~~~~~g~v~~~~~~~~~~~--~~~~~v~~~~~ 272 (320)
.-+||++.|+||||||||||+..+. |.+.+. +|++.++..+. ........+...||+.+.|+ +++.++.+...
T Consensus 25 ia~GeivtlMGPSGcGKSTLls~~~-G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp 103 (213)
T COG4136 25 IAKGEIVTLMGPSGCGKSTLLSWMI-GALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALP 103 (213)
T ss_pred ecCCcEEEEECCCCccHHHHHHHHH-hhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecC
Confidence 3349999999999999999999999 999875 69988875541 11112334455566655553 45666666555
Q ss_pred CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 273 GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
..+.... +...+...++..|+.....+.|.+|||++.
T Consensus 104 ~~~KG~a---Rr~~a~aAL~~~gL~g~f~~dP~tlSGGQr 140 (213)
T COG4136 104 ATLKGNA---RRNAANAALERSGLDGAFHQDPATLSGGQR 140 (213)
T ss_pred cccccHH---HHhhHHHHHHHhccchhhhcChhhcCcchH
Confidence 4443332 223334456667778888899999999764
No 258
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.35 E-value=5.6e-13 Score=118.39 Aligned_cols=114 Identities=17% Similarity=0.135 Sum_probs=70.4
Q ss_pred eecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCCcccc
Q psy15138 188 QYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVG 264 (320)
Q Consensus 188 ~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~ 264 (320)
.|+...++++++|. |++++|+||||||||||+++|+ |+++|++|++.+++..... ...+ ..+....++.
T Consensus 31 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~p~~G~i~~~g~~~~~-~~~~------~~~~~~~tv~ 102 (224)
T cd03220 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLA-GIYPPDSGTVTVRGRVSSL-LGLG------GGFNPELTGR 102 (224)
T ss_pred hcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEEchh-hccc------ccCCCCCcHH
Confidence 34445677777765 9999999999999999999999 9999999999987542110 0000 0001112333
Q ss_pred ceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 265 NVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 265 ~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
+++..... ........ ..++.++++.+++.+..++.+.+|||++.
T Consensus 103 enl~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 148 (224)
T cd03220 103 ENIYLNGRLLGLSRKEI---DEKIDEIIEFSELGDFIDLPVKTYSSGMK 148 (224)
T ss_pred HHHHHHHHHcCCCHHHH---HHHHHHHHHHcCChhhhhCChhhCCHHHH
Confidence 33322111 11111221 22344555666778888999999999653
No 259
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.35 E-value=5.9e-13 Score=132.39 Aligned_cols=50 Identities=22% Similarity=0.308 Sum_probs=42.5
Q ss_pred eeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcC--CCCCceeeec
Q psy15138 187 GQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGEL--DNGRGHARQK 237 (320)
Q Consensus 187 ~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l--~~~~G~i~~~ 237 (320)
..|+.+.++++++|. |++++|+||||||||||+++|+ |++ +|++|+|.+.
T Consensus 8 ~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~-Gl~~~~p~~G~i~~~ 62 (520)
T TIGR03269 8 KKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLR-GMDQYEPTSGRIIYH 62 (520)
T ss_pred EEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHh-hcccCCCCceEEEEe
Confidence 334445677887776 9999999999999999999999 997 6999999875
No 260
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.34 E-value=6.3e-13 Score=121.23 Aligned_cols=134 Identities=19% Similarity=0.182 Sum_probs=78.9
Q ss_pred eeeeeecCCCeeee-----ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----
Q psy15138 175 LLRQRKLDNGLTGQ-----YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---- 242 (320)
Q Consensus 175 ~~~~~~~~~~~~~~-----~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---- 242 (320)
+++++++++.|... .....++++++|. |++++|+||||||||||+++|+ |+++|.+|+|.+++....
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLV-GLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEeccccCh
Confidence 35566665554310 0023467777765 9999999999999999999999 999999999998764311
Q ss_pred h--hhhcCcceeeecccc-CC---ccccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCC
Q psy15138 243 H--EMESGRTSSVGNDIL-GF---DSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 ~--~~~~g~v~~~~~~~~-~~---~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~ 312 (320)
. ......++.++|+.. .| .+..+++..... ...... +...++.++++..|+. ...++.+..|||++.
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~ 157 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA---ERLARASEMLRAVDLDDSVLDKRPPQLSGGQL 157 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH---HHHHHHHHHHHHcCCChhHhhCCCccCChHHH
Confidence 0 111234455555431 11 222333221110 111111 1222344555566775 567889999999653
No 261
>PRK12735 elongation factor Tu; Reviewed
Probab=99.34 E-value=1.7e-12 Score=124.71 Aligned_cols=85 Identities=25% Similarity=0.250 Sum_probs=71.2
Q ss_pred CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcE-EEEeCCCCCCh-hHHHHH
Q psy15138 12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVF-VVVTKIDMCPP-NVLQDT 87 (320)
Q Consensus 12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~-v~lnk~Dl~~~-~~le~~ 87 (320)
++..+.|+|+|||++|+ |+.++..+|.+++ |+++++|++++|++|+.++..+++|.+ +++||+|+.+. +.++..
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~ll--Vvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~ 150 (396)
T PRK12735 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAIL--VVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELV 150 (396)
T ss_pred CCcEEEEEECCCHHHHHHHHHhhhccCCEEEE--EEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHH
Confidence 44568999999999999 9999999999999 999999999999999999999999866 57999999843 445555
Q ss_pred HHHHHHhhcCC
Q psy15138 88 LKLLVRILKSP 98 (320)
Q Consensus 88 l~~~~~~l~~~ 98 (320)
.+++...+...
T Consensus 151 ~~ei~~~l~~~ 161 (396)
T PRK12735 151 EMEVRELLSKY 161 (396)
T ss_pred HHHHHHHHHHc
Confidence 55676666543
No 262
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.34 E-value=7.5e-13 Score=135.83 Aligned_cols=93 Identities=16% Similarity=0.039 Sum_probs=67.7
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g 248 (320)
.++++++++.|... ...++++++++ |+++||+||||||||||+|+|+ |+++|++|+|.+++.+. .....+.
T Consensus 451 ~I~~~nvsf~Y~~~--~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~-gl~~p~~G~I~idg~~i~~~~~~~lr~ 527 (686)
T TIGR03797 451 AIEVDRVTFRYRPD--GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLL-GFETPESGSVFYDGQDLAGLDVQAVRR 527 (686)
T ss_pred eEEEEEEEEEcCCC--CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCEEEECCEEcCcCCHHHHHh
Confidence 35666666666421 23467777775 9999999999999999999999 99999999999986542 2223345
Q ss_pred cceeeeccccCC-ccccceeecC
Q psy15138 249 RTSSVGNDILGF-DSVGNVVNKP 270 (320)
Q Consensus 249 ~v~~~~~~~~~~-~~~~~~v~~~ 270 (320)
.++.++|+...| .+..+++..+
T Consensus 528 ~i~~v~Q~~~lf~gTI~eNi~~~ 550 (686)
T TIGR03797 528 QLGVVLQNGRLMSGSIFENIAGG 550 (686)
T ss_pred ccEEEccCCccCcccHHHHHhcC
Confidence 667777776665 4566666654
No 263
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.34 E-value=4.2e-13 Score=121.42 Aligned_cols=127 Identities=16% Similarity=0.134 Sum_probs=75.0
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC----CCceeeeccccchh-hhh
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN----GRGHARQKLFRHKH-EME 246 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~----~~G~i~~~~~~~~~-~~~ 246 (320)
.++++++++.| ...+++++++. |++++|+||||||||||+++|+ |+++| ++|+|.+++.+... ...
T Consensus 4 ~l~~~~l~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-----AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAAL-GILPAGVRQTAGRVLLDGKPVAPCALR 77 (254)
T ss_pred EEEEeCeEEEe-----ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCCcCCEEEECCeeccccccc
Confidence 45666665544 23456666665 9999999999999999999999 99999 99999987543211 111
Q ss_pred cCcceeeecccc-CCc---cccceeecCC-CCCCCHHhHHHHHHHHHHHhcccCCcc---ccccccccccCCCC
Q psy15138 247 SGRTSSVGNDIL-GFD---SVGNVVNKPE-HGSLDWVKICERSAKVITFIDLAGHER---YLKTTVFGMTGHVP 312 (320)
Q Consensus 247 ~g~v~~~~~~~~-~~~---~~~~~v~~~~-~~~~~~~~~~~~~~~~l~~l~l~gl~~---~~~~~~~~LSG~~~ 312 (320)
...++.++|+.. .|. +..+++.... ...... . .+++.+.++.+++.+ ..++.+.+|||++.
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~ 146 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPA--D---DATLTAALEAVGLENAARVLKLYPFEMSGGML 146 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCCh--H---HHHHHHHHHHcCCCChhhhhhcCCcccCHHHH
Confidence 123445555432 121 1111111100 011111 1 133444555556554 57889999999653
No 264
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.34 E-value=7e-13 Score=117.68 Aligned_cols=111 Identities=19% Similarity=0.182 Sum_probs=67.1
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcceeeeccccCC-ccccceeecCCCCCCCH-
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTSSVGNDILGF-DSVGNVVNKPEHGSLDW- 277 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~~~~~~- 277 (320)
.|++++|+||||||||||+++|+ |+++|++|+|.+++.+... ...+++++|.+.....+ .+..+++..........
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~ 83 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAIL-GLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWL 83 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccc
Confidence 38999999999999999999999 9999999999998653211 11234444432211111 22333333221100000
Q ss_pred -HhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 278 -VKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 278 -~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
........++.++++.+++.++.++.+.+|||++.
T Consensus 84 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 119 (223)
T TIGR03771 84 RRPCVADFAAVRDALRRVGLTELADRPVGELSGGQR 119 (223)
T ss_pred cCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHH
Confidence 00011223455566677778888999999999653
No 265
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.34 E-value=4.8e-13 Score=119.21 Aligned_cols=107 Identities=17% Similarity=0.128 Sum_probs=64.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCC----CCceeeeccccchh-hhhcCcceeeecccc-CC---ccccceeecCCC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDN----GRGHARQKLFRHKH-EMESGRTSSVGNDIL-GF---DSVGNVVNKPEH 272 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~----~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~-~~---~~~~~~v~~~~~ 272 (320)
|++++|+||||||||||+++|+ |+++| ++|+|.+++.+... ......++.++|+.. .| .+..+++.....
T Consensus 12 Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~ 90 (230)
T TIGR02770 12 GEVLALVGESGSGKSLTCLAIL-GLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLR 90 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHh-cCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHH
Confidence 9999999999999999999999 99999 89999987654211 111123444454431 11 122222221110
Q ss_pred -CCCCHHhHHHHHHHHHHHhcccCCc---cccccccccccCCCC
Q psy15138 273 -GSLDWVKICERSAKVITFIDLAGHE---RYLKTTVFGMTGHVP 312 (320)
Q Consensus 273 -~~~~~~~~~~~~~~~l~~l~l~gl~---~~~~~~~~~LSG~~~ 312 (320)
...... ....++.++++.+++. +..++.+..|||++.
T Consensus 91 ~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~ 131 (230)
T TIGR02770 91 SLGKLSK---QARALILEALEAVGLPDPEEVLKKYPFQLSGGML 131 (230)
T ss_pred HcCccHH---HHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHH
Confidence 111111 1223445556666665 567889999999654
No 266
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.34 E-value=9.1e-13 Score=130.44 Aligned_cols=120 Identities=16% Similarity=0.095 Sum_probs=72.5
Q ss_pred ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC--CCceeeeccccch----hhhhcCcceeeeccccC
Q psy15138 189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN--GRGHARQKLFRHK----HEMESGRTSSVGNDILG 259 (320)
Q Consensus 189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~--~~G~i~~~~~~~~----~~~~~g~v~~~~~~~~~ 259 (320)
|+...++++++|. |++++|+||||||||||+++|+ |+++| ++|+|.+++.... .......++.++|+...
T Consensus 11 ~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~-G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 89 (500)
T TIGR02633 11 FGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILS-GVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTL 89 (500)
T ss_pred eCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeecccc
Confidence 3334577777776 9999999999999999999999 99987 7999998754311 11111223444443322
Q ss_pred C--ccccceeecCCCC-----CCCHHhHHHHHHHHHHHhcccCCcccc-ccccccccCCCC
Q psy15138 260 F--DSVGNVVNKPEHG-----SLDWVKICERSAKVITFIDLAGHERYL-KTTVFGMTGHVP 312 (320)
Q Consensus 260 ~--~~~~~~v~~~~~~-----~~~~~~~~~~~~~~l~~l~l~gl~~~~-~~~~~~LSG~~~ 312 (320)
+ .++.+++..+... ....... ..++.++++.+|+.+.. ++++..|||++.
T Consensus 90 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~ 147 (500)
T TIGR02633 90 VPELSVAENIFLGNEITLPGGRMAYNAM---YLRAKNLLRELQLDADNVTRPVGDYGGGQQ 147 (500)
T ss_pred CCCCcHHHHHHhhccccccccccCHHHH---HHHHHHHHHHcCCCCCcccCchhhCCHHHH
Confidence 2 2344444332211 0112222 23444556666666554 577999999653
No 267
>CHL00071 tufA elongation factor Tu
Probab=99.34 E-value=1.3e-12 Score=126.09 Aligned_cols=87 Identities=23% Similarity=0.205 Sum_probs=73.9
Q ss_pred CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCChhH-HHHH
Q psy15138 12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCPPNV-LQDT 87 (320)
Q Consensus 12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~~~~-le~~ 87 (320)
+...+.|+|+|||++|+ |+.+...+|.+++ ||+|++|+++||++|+.++..+++| .++++||+|+++.+. ++..
T Consensus 73 ~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~il--Vvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~ 150 (409)
T CHL00071 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAIL--VVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELV 150 (409)
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHhCCEEEE--EEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHH
Confidence 34568999999999999 9999999999999 9999999999999999999999998 668899999986444 4555
Q ss_pred HHHHHHhhcCCCc
Q psy15138 88 LKLLVRILKSPGC 100 (320)
Q Consensus 88 l~~~~~~l~~~~~ 100 (320)
.+++...|....+
T Consensus 151 ~~~l~~~l~~~~~ 163 (409)
T CHL00071 151 ELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHHhCC
Confidence 5677777765444
No 268
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.34 E-value=1e-12 Score=118.63 Aligned_cols=133 Identities=19% Similarity=0.099 Sum_probs=76.1
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCC-----Cceeeeccccch----
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNG-----RGHARQKLFRHK---- 242 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~-----~G~i~~~~~~~~---- 242 (320)
+++++++++.| +...++++++|. |++++|+||||||||||+++|+ |+++|. +|+|.+++.+..
T Consensus 4 ~l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~-G~~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (252)
T PRK14272 4 LLSAQDVNIYY----GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAIN-RMHDLTPGARVTGRILLDGQDIYGPRV 78 (252)
T ss_pred EEEEeeeEEEE----CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHh-ccCCCCcCCCCceeEEECCEEcccCcc
Confidence 34555555444 334567777775 9999999999999999999999 999874 799998754321
Q ss_pred -hhhhcCcceeeeccccCC--ccccceeecCCC-CCC-CHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138 243 -HEMESGRTSSVGNDILGF--DSVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 -~~~~~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~ 312 (320)
.......++.++|+...+ .+..+++..... ... ......+...+.++.+++. ++.+..++.+..|||++.
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 154 (252)
T PRK14272 79 DPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQ 154 (252)
T ss_pred CHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHH
Confidence 111122344445443322 233444432211 111 1122222333333333332 223456788999999654
No 269
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.34 E-value=8e-13 Score=119.32 Aligned_cols=120 Identities=18% Similarity=0.128 Sum_probs=71.0
Q ss_pred ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeeccccchh-----hhhcCcceeeec
Q psy15138 189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFRHKH-----EMESGRTSSVGN 255 (320)
Q Consensus 189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~~~~-----~~~~g~v~~~~~ 255 (320)
|+....+++++|. |++++|+||||||||||+++|+ |+.+ |.+|+|.+++..... ......++.++|
T Consensus 15 ~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~-G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q 93 (251)
T PRK14244 15 YGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFN-RMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQ 93 (251)
T ss_pred ECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHH-hhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEec
Confidence 3334567777765 9999999999999999999999 9986 469999987543110 011233455555
Q ss_pred cccCCc-cccceeecCC-CCCC--CHHhHHHHHHHHHHHhcccCCcc----ccccccccccCCCC
Q psy15138 256 DILGFD-SVGNVVNKPE-HGSL--DWVKICERSAKVITFIDLAGHER----YLKTTVFGMTGHVP 312 (320)
Q Consensus 256 ~~~~~~-~~~~~v~~~~-~~~~--~~~~~~~~~~~~l~~l~l~gl~~----~~~~~~~~LSG~~~ 312 (320)
+...|. ++.+++.... .... ..... ..++.++++.+|+.+ ..++.+..|||++.
T Consensus 94 ~~~~~~~tv~~ni~~~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 94 KPNPFPKSIYDNVAYGPKLHGLAKNKKKL---DEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQ 155 (251)
T ss_pred CcccccCCHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHHHcCCCchhhhHhhcChhhCCHHHH
Confidence 533222 3444443321 1111 11111 223344555555543 46778899999653
No 270
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.34 E-value=1e-12 Score=114.89 Aligned_cols=45 Identities=33% Similarity=0.401 Sum_probs=40.3
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL 238 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~ 238 (320)
.+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~-G~~~~~~G~i~~~g 66 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALL-GELEKLSGSVSVPG 66 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHh-CcCCCCCCeEEEcC
Confidence 466666665 9999999999999999999999 99999999999864
No 271
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.33 E-value=1e-12 Score=135.22 Aligned_cols=95 Identities=19% Similarity=0.173 Sum_probs=68.9
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g 248 (320)
.++++++++.|... +...+++++++. |++++|+||||||||||+++|. |+++|++|+|.+++.+. .+.....
T Consensus 478 ~I~~~nVsf~Y~~~-~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~-gl~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 478 LIEFQDVSFSYPNR-PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQ-NLYQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred eEEEEEEEEECCCC-CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHH-hccCCCCCEEEECCEEHHhcCHHHHHh
Confidence 36677777666421 123567777775 9999999999999999999999 99999999999986542 2222344
Q ss_pred cceeeeccccCC-ccccceeecCC
Q psy15138 249 RTSSVGNDILGF-DSVGNVVNKPE 271 (320)
Q Consensus 249 ~v~~~~~~~~~~-~~~~~~v~~~~ 271 (320)
.++.++|+...| .+..+|+..+.
T Consensus 556 ~i~~v~Q~~~lF~gTIreNI~~g~ 579 (711)
T TIGR00958 556 QVALVGQEPVLFSGSVRENIAYGL 579 (711)
T ss_pred hceEEecCccccccCHHHHHhcCC
Confidence 566667776655 46677776653
No 272
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.33 E-value=1.6e-12 Score=118.54 Aligned_cols=131 Identities=18% Similarity=0.099 Sum_probs=78.1
Q ss_pred eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeeccccch---
Q psy15138 174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFRHK--- 242 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~~~--- 242 (320)
..++++++.+.| +.+.+++++++. |++++|+||||||||||+++|+ |+++ |++|+|.+++.+..
T Consensus 19 ~~l~~~nl~~~~----~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~-Gl~~~~~~~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 19 IALSTKDLHVYY----GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLN-RMNDTIDIARVTGQILYRGIDINRKE 93 (267)
T ss_pred eEEEEeeEEEEE----CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHH-hccCccCCCCcceEEEECCEEccccc
Confidence 356666665544 335567777775 9999999999999999999999 9986 57999988754321
Q ss_pred --hhhhcCcceeeeccccCC-ccccceeecCCC-CC-CCHHhHHHHHHHHHHHhcccCC----ccccccccccccCCCC
Q psy15138 243 --HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GS-LDWVKICERSAKVITFIDLAGH----ERYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 --~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~-~~~~~~~~~~~~~l~~l~l~gl----~~~~~~~~~~LSG~~~ 312 (320)
.......++.++|....| .++.+++..+.. .. .......+. +.++++..++ .+..++.+..|||++.
T Consensus 94 ~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~---~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 94 INVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEI---VETSLKQAALWDQVKDDLHKSALTLSGGQQ 169 (267)
T ss_pred CChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHH---HHHHHHHcCCCchhhhhhcCCcccCCHHHH
Confidence 111122344445543222 244454443211 11 111122222 3334444444 3467888999999653
No 273
>KOG0459|consensus
Probab=99.33 E-value=1.8e-12 Score=120.28 Aligned_cols=89 Identities=25% Similarity=0.300 Sum_probs=76.1
Q ss_pred CCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-------hhHHHHHHHHHHcCC-CcEEEEeCCCC--
Q psy15138 11 TAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-------GMTKEHLGLALALSV-PVFVVVTKIDM-- 78 (320)
Q Consensus 11 ~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-------~~t~~~l~l~~~l~i-~~~v~lnk~Dl-- 78 (320)
|+..+++++|+|||.-|+ |+.|++++|.++| |++|..|-. +|||||..||+++++ ..++++||||-
T Consensus 154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vL--visar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPt 231 (501)
T KOG0459|consen 154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVL--VISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 231 (501)
T ss_pred ecceeEEeeccCcccccchhhccccchhhhhhh--hhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCc
Confidence 567789999999999999 9999999999999 999975543 599999999999999 68899999995
Q ss_pred --CChhHHHHHHHHHHHhhcCCCcc
Q psy15138 79 --CPPNVLQDTLKLLVRILKSPGCR 101 (320)
Q Consensus 79 --~~~~~le~~l~~~~~~l~~~~~~ 101 (320)
.+.+|+++....+..+|...+++
T Consensus 232 vnWs~eRy~E~~~k~~~fLr~~g~n 256 (501)
T KOG0459|consen 232 VNWSNERYEECKEKLQPFLRKLGFN 256 (501)
T ss_pred cCcchhhHHHHHHHHHHHHHHhccc
Confidence 46778888888888777744444
No 274
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.33 E-value=3.6e-12 Score=111.50 Aligned_cols=112 Identities=20% Similarity=0.204 Sum_probs=84.9
Q ss_pred CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCC-CchhHHHHHHHHHHcCC-CcEEEEeCCCCCChhHHHHHH
Q psy15138 13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAG-IVGMTKEHLGLALALSV-PVFVVVTKIDMCPPNVLQDTL 88 (320)
Q Consensus 13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g-~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~~~~le~~l 88 (320)
+..+.|+|+|||++|. ++.++.++|.+++ |++++++ ..+++++++..+...++ |+++++||+|+.....++..+
T Consensus 82 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ll--Vvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~ 159 (203)
T cd01888 82 VRHVSFVDCPGHEILMATMLSGAAVMDGALL--LIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENY 159 (203)
T ss_pred ccEEEEEECCChHHHHHHHHHhhhcCCEEEE--EEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHH
Confidence 3679999999999999 8999999999999 9999984 67899999999998998 578899999998877777777
Q ss_pred HHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138 89 KLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL 127 (320)
Q Consensus 89 ~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~ 127 (320)
+++...+........+. +..+..+.+..+++.+.+..+
T Consensus 160 ~~i~~~~~~~~~~~~~i-~~vSA~~g~gi~~L~~~l~~~ 197 (203)
T cd01888 160 EQIKKFVKGTIAENAPI-IPISAQLKYNIDVLLEYIVKK 197 (203)
T ss_pred HHHHHHHhccccCCCcE-EEEeCCCCCCHHHHHHHHHHh
Confidence 77776654321111111 123345666677777776554
No 275
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=1.5e-12 Score=117.54 Aligned_cols=129 Identities=17% Similarity=0.085 Sum_probs=75.5
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC--C---CCceeeeccccch-----
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD--N---GRGHARQKLFRHK----- 242 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~--~---~~G~i~~~~~~~~----- 242 (320)
++++++++.| +...+++++++. |++++|+||||||||||+++|+ |+++ | ++|+|.+++....
T Consensus 5 l~~~nl~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 5 VKLEQLNVHF----GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSIN-RMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred EEEEEEEEEe----CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHH-hcccCCCCCCCceEEEECCEEcccccCC
Confidence 4555555444 234567777665 9999999999999999999999 9986 4 5899998764321
Q ss_pred hhhhcCcceeeeccccCC--ccccceeecCCC--CCCCHHhHHHHHHHHHHHhcccCCc----cccccccccccCCCC
Q psy15138 243 HEMESGRTSSVGNDILGF--DSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAGHE----RYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 ~~~~~g~v~~~~~~~~~~--~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~gl~----~~~~~~~~~LSG~~~ 312 (320)
.......++.++|+...+ .+..+++..... .........+ ++.++++.+++. +..++.+..|||++.
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 154 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADE---IVESSLKRVALWDEVKDRLKSNAMELSGGQQ 154 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHH---HHHHHHHHcCCchhhhHHhhCCcCcCCHHHH
Confidence 111123345555553333 234444432211 1111222222 233444444443 456778999999653
No 276
>PRK12288 GTPase RsgA; Reviewed
Probab=99.33 E-value=8.5e-12 Score=117.44 Aligned_cols=152 Identities=18% Similarity=0.215 Sum_probs=90.4
Q ss_pred CCccchhhhccceecCCCCch-hHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHHHHhhcCCCccccCccccc-c
Q psy15138 33 ASPADHSMLQSKVGANAGIVG-MTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNCL-I 110 (320)
Q Consensus 33 ~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~~~~l~~~~~~~i~~kl~~-~ 110 (320)
++|+|++++ |.+.+..... ...+.+.++...++|+++|+||+|+.+....+. ..++...+...++ .+.. +
T Consensus 118 aANvD~vlI--V~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~-~~~~~~~y~~~g~-----~v~~vS 189 (347)
T PRK12288 118 AANIDQIVI--VSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAF-VNEQLDIYRNIGY-----RVLMVS 189 (347)
T ss_pred EEEccEEEE--EEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHH-HHHHHHHHHhCCC-----eEEEEe
Confidence 689999888 7776644432 445678889999999999999999986543221 2222222211111 1111 2
Q ss_pred CCchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeeeeec
Q psy15138 111 SPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQYL 190 (320)
Q Consensus 111 ~gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (320)
..+.+.++++...+.
T Consensus 190 A~tg~GideL~~~L~----------------------------------------------------------------- 204 (347)
T PRK12288 190 SHTGEGLEELEAALT----------------------------------------------------------------- 204 (347)
T ss_pred CCCCcCHHHHHHHHh-----------------------------------------------------------------
Confidence 223333333332211
Q ss_pred ceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCCccccceeecC
Q psy15138 191 LRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKP 270 (320)
Q Consensus 191 ~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~v~~~ 270 (320)
+..++|+|+||+|||||+|.|. |......|.+..... .|+.......++.++..+.++..+
T Consensus 205 -----------~ki~~~vG~sgVGKSTLiN~Ll-~~~~~~t~~is~~~~-------rGrHTT~~~~l~~l~~~~~liDTP 265 (347)
T PRK12288 205 -----------GRISIFVGQSGVGKSSLINALL-PEAEILVGDVSDNSG-------LGQHTTTAARLYHFPHGGDLIDSP 265 (347)
T ss_pred -----------hCCEEEECCCCCCHHHHHHHhc-cccceeeccccCcCC-------CCcCceeeEEEEEecCCCEEEECC
Confidence 1126899999999999999999 888777787764322 344444444444444445567776
Q ss_pred CCCCCC
Q psy15138 271 EHGSLD 276 (320)
Q Consensus 271 ~~~~~~ 276 (320)
....++
T Consensus 266 Gir~~~ 271 (347)
T PRK12288 266 GVREFG 271 (347)
T ss_pred CCCccc
Confidence 654433
No 277
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=1.9e-12 Score=118.40 Aligned_cols=137 Identities=13% Similarity=0.017 Sum_probs=79.1
Q ss_pred cCCceeeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeecccc
Q psy15138 169 LEADCVLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFR 240 (320)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~ 240 (320)
+++....++++++.+.|. ...++++++|. |++++|+||||||||||+++|+ |+++| .+|+|.+++.+
T Consensus 14 ~~~~~~~l~~~nl~~~~~----~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~-Gl~~~~~~~~~~G~i~~~g~~ 88 (274)
T PRK14265 14 INPDHSVFEVEGVKVFYG----GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFN-RMNDLIPGAKVEGRLLYRDRN 88 (274)
T ss_pred cCCCCceEEEeeEEEEeC----CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHh-cccccccCCCcCceEEECCEe
Confidence 445556778877766553 23466666665 9999999999999999999999 99863 58999987543
Q ss_pred ch-----hhhhcCcceeeeccccCC-ccccceeecCCC-CCCCHHhHHHHHHHHHHHhccc-CCccccccccccccCCC
Q psy15138 241 HK-----HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHV 311 (320)
Q Consensus 241 ~~-----~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~ 311 (320)
.. .......++.++|+...+ .++.+++..... .... ....+...+.++.+++. ++.+..++++..|||++
T Consensus 89 l~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq 166 (274)
T PRK14265 89 IYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQ 166 (274)
T ss_pred cccccchhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHH
Confidence 21 111123445555543322 233343332211 1111 11112223333333321 12356788899999964
No 278
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.33 E-value=2.2e-12 Score=124.46 Aligned_cols=110 Identities=21% Similarity=0.235 Sum_probs=83.6
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCC-chhHHHHHHHHHHcCC-CcEEEEeCCCCCChhHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGI-VGMTKEHLGLALALSV-PVFVVVTKIDMCPPNVLQDTLK 89 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~-~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~~~~le~~l~ 89 (320)
..+.++|+|||++|. |+.+++.+|.+++ ||++++|+ +++|++|+.++..+++ |+++++||+|+.+.++.++..+
T Consensus 80 ~~i~liDtPGh~~f~~~~~~g~~~aD~aIl--VVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~ 157 (406)
T TIGR03680 80 RRVSFVDAPGHETLMATMLSGAALMDGALL--VIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYE 157 (406)
T ss_pred cEEEEEECCCHHHHHHHHHHHHHHCCEEEE--EEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHH
Confidence 468999999999999 9999999999999 99999998 8999999999999999 5788899999998877766666
Q ss_pred HHHHhhcCCCccccCccccccCCchhHHHHHHHHHHH
Q psy15138 90 LLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKS 126 (320)
Q Consensus 90 ~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~ 126 (320)
++...+........+. +-.+.-+.+..+++.+.+..
T Consensus 158 ~i~~~l~~~~~~~~~i-i~vSA~~g~gi~~L~e~L~~ 193 (406)
T TIGR03680 158 EIKEFVKGTVAENAPI-IPVSALHNANIDALLEAIEK 193 (406)
T ss_pred HHHhhhhhcccCCCeE-EEEECCCCCChHHHHHHHHH
Confidence 7766554321112211 11233455566666666554
No 279
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=2.3e-12 Score=117.53 Aligned_cols=138 Identities=17% Similarity=0.098 Sum_probs=79.0
Q ss_pred CCceeeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeeccccc
Q psy15138 170 EADCVLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFRH 241 (320)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~~ 241 (320)
++....++++++++.|. ...+++++++. |++++|+||||||||||+++|+ |+++ |++|+|.+++.+.
T Consensus 16 ~~~~~~l~~~~l~~~~~----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~~~~G~i~~~g~~i 90 (268)
T PRK14248 16 EAKEHILEVKDLSIYYG----EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSIN-RMNDLIPSARSEGEILYEGLNI 90 (268)
T ss_pred CCCCceEEEEEEEEEeC----CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHH-hcccccCCCCCceEEEECCEEc
Confidence 34445677777765543 34567777765 9999999999999999999999 9864 6899999875432
Q ss_pred h-----hhhhcCcceeeeccccCC-ccccceeecCCC-CCC-CHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138 242 K-----HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 242 ~-----~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~ 312 (320)
. .......++.++|+...| .+..+++..... ... ......+...++++.+++. ++.+..++.+..|||++.
T Consensus 91 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 91 LDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQ 170 (268)
T ss_pred ccccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHH
Confidence 1 111122345555543333 233444432211 111 1111122233333333321 113457888999999653
No 280
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.33 E-value=7.1e-13 Score=117.88 Aligned_cols=47 Identities=28% Similarity=0.352 Sum_probs=41.5
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR 240 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~ 240 (320)
..+++++|. |++++|+||||||||||+++|+ |+++|.+|+|.+++.+
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~ 66 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLM-RFYDPQKGQILIDGID 66 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCcCCCCCEEEECCEe
Confidence 467777765 9999999999999999999999 9999999999987543
No 281
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=8.8e-13 Score=126.68 Aligned_cols=126 Identities=20% Similarity=0.275 Sum_probs=79.1
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--h-hhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--E-MESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~-~~~g 248 (320)
.++++++++.|... ..+++++.++. ||++||+|+||||||||+.+|. |.++|++|+|+.++.+..+ + ....
T Consensus 336 ~l~~~~vsF~y~~~--~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~-~~~~~~~G~i~~~g~~~~~l~~~~~~e 412 (573)
T COG4987 336 ALELRNVSFTYPGQ--QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLA-GAWDPQQGSITLNGVEIASLDEQALRE 412 (573)
T ss_pred eeeeccceeecCCC--ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHH-hccCCCCCeeeECCcChhhCChhhHHH
Confidence 34556555555432 23578888776 9999999999999999999999 9999999999998644211 1 1122
Q ss_pred cceeeeccccCC-ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCcccccccc-----------ccccCCC
Q psy15138 249 RTSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTV-----------FGMTGHV 311 (320)
Q Consensus 249 ~v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~-----------~~LSG~~ 311 (320)
.++...|....| .+..+|+....... + .+++.+.++.+|++++....| ..|||++
T Consensus 413 ~i~vl~Qr~hlF~~Tlr~NL~lA~~~A-s-------DEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE 479 (573)
T COG4987 413 TISVLTQRVHLFSGTLRDNLRLANPDA-S-------DEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGE 479 (573)
T ss_pred HHhhhccchHHHHHHHHHHHhhcCCCC-C-------HHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchH
Confidence 334444444444 45666666544332 1 123334444555555544443 6677765
No 282
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.33 E-value=1e-12 Score=118.52 Aligned_cols=132 Identities=20% Similarity=0.085 Sum_probs=75.3
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch-----
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK----- 242 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~----- 242 (320)
++++++.+.| +...++++++|. |++++|+||||||||||+++|+ |+++| ++|+|.+++.+..
T Consensus 4 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~-G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 4 ISVKDLDLFY----GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLN-RMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred EEEEEEEEEE----CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHh-ccccccCCCCCceEEEECCEEccccccc
Confidence 4555554444 234567777765 9999999999999999999999 98763 6899998754321
Q ss_pred hhhhcCcceeeeccccCC-ccccceeecCCC-CCC-CHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138 243 HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 ~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~ 312 (320)
.......++.++|+...+ .+..+++..... ... ......+...++++.+++. ++.+..++.+..|||++.
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQ 152 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHH
Confidence 111123344555543322 233444433211 111 1112223333444443331 123466788999999653
No 283
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.33 E-value=1.4e-12 Score=130.94 Aligned_cols=132 Identities=19% Similarity=0.180 Sum_probs=84.8
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc---chhhhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR---HKHEMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~---~~~~~~~g~ 249 (320)
++++++++.|.. ..+++++++|. |+++||+||||||||||+++|. |+++|.+|+|.+++.+ ......+..
T Consensus 329 I~f~~vsf~y~~---~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~-r~~~~~~G~I~idg~dI~~i~~~~lr~~ 404 (567)
T COG1132 329 IEFENVSFSYPG---KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLL-RLYDPTSGEILIDGIDIRDISLDSLRKR 404 (567)
T ss_pred EEEEEEEEEcCC---CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHh-ccCCCCCCeEEECCEehhhcCHHHHHHh
Confidence 667777766653 34567777764 9999999999999999999999 9999999999996543 222333455
Q ss_pred ceeeeccccCC-ccccceeecCCCCCCCHHhHHHHHHH--HHHHhccc--CCccccccccccccCCCC
Q psy15138 250 TSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICERSAK--VITFIDLA--GHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 250 v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~--~l~~l~l~--gl~~~~~~~~~~LSG~~~ 312 (320)
++.++|+...| .+..+|+.++... ...+++.+..+. +.+++... |+.......-..|||++.
T Consensus 405 I~~V~Qd~~LF~~TI~~NI~~g~~~-at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQr 471 (567)
T COG1132 405 IGIVSQDPLLFSGTIRENIALGRPD-ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQR 471 (567)
T ss_pred ccEEcccceeecccHHHHHhcCCCC-CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHH
Confidence 66667776665 5677887776543 222333222111 22222222 344444444457888654
No 284
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.32 E-value=1.6e-12 Score=117.84 Aligned_cols=130 Identities=13% Similarity=0.029 Sum_probs=76.4
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC--C---CCceeeeccccch----
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD--N---GRGHARQKLFRHK---- 242 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~--~---~~G~i~~~~~~~~---- 242 (320)
.++++++.+.|. ...++++++|. |++++|+||||||||||+++|+ |+++ | ++|+|.+++.+..
T Consensus 12 ~l~i~~l~~~~~----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~-G~~~~~p~~~~~G~i~~~g~~~~~~~~ 86 (259)
T PRK14274 12 VYQINGMNLWYG----QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLN-LMIQMVPNVKLTGEMNYNGSNILKGKV 86 (259)
T ss_pred eEEEeeEEEEEC----CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHH-hhccCCCCCCCceEEEECCEEcccccc
Confidence 567777665543 23466666665 9999999999999999999999 9987 3 5899998754321
Q ss_pred -hhhhcCcceeeeccccCC-ccccceeecCCC-CC-CCHHhHHHHHHHHHHHhcccCCc----cccccccccccCCCC
Q psy15138 243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GS-LDWVKICERSAKVITFIDLAGHE----RYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~-~~~~~~~~~~~~~l~~l~l~gl~----~~~~~~~~~LSG~~~ 312 (320)
.......+++++|+...+ .++.+++..... .. .......+... ++++.+++. +..++.+.+|||++.
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~---~~l~~~~l~~~~~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 87 DLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVE---KSLKDVALWDEVKDRLHTQALSLSGGQQ 161 (259)
T ss_pred CHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHH---HHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 111123344555543322 244444432211 11 11122222233 344444442 456888999999654
No 285
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.32 E-value=1.2e-12 Score=118.65 Aligned_cols=129 Identities=15% Similarity=0.048 Sum_probs=74.4
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc------ccc---h
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL------FRH---K 242 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~------~~~---~ 242 (320)
.+.++++.+.| +....+++++|. |++++|+||||||||||+++|+ |+++|.+|++.+.+ .+. .
T Consensus 10 ~i~~~~~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~ia-G~~~~~~G~v~~~G~~~~~g~~~~~~~ 84 (257)
T PRK14246 10 VFNISRLYLYI----NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLN-RLIEIYDSKIKVDGKVLYFGKDIFQID 84 (257)
T ss_pred heeeeeEEEec----CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCcCceeEcCEEEECCcccccCC
Confidence 45555554433 344567777765 9999999999999999999999 99999998776543 111 1
Q ss_pred hhhhcCcceeeeccccCC--ccccceeecCCCC-C-CCHHhHHHHHHHHHHHhcccCCc----cccccccccccCCC
Q psy15138 243 HEMESGRTSSVGNDILGF--DSVGNVVNKPEHG-S-LDWVKICERSAKVITFIDLAGHE----RYLKTTVFGMTGHV 311 (320)
Q Consensus 243 ~~~~~g~v~~~~~~~~~~--~~~~~~v~~~~~~-~-~~~~~~~~~~~~~l~~l~l~gl~----~~~~~~~~~LSG~~ 311 (320)
.......++..+|+...+ .++.+++...... . ....+.. .++.++++.+++. +..++.+..|||++
T Consensus 85 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~ 158 (257)
T PRK14246 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIK---KIVEECLRKVGLWKEVYDRLNSPASQLSGGQ 158 (257)
T ss_pred HHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHH---HHHHHHHHHcCCCccchhhhcCCcccCCHHH
Confidence 101122334444443222 2444444432211 1 1122222 2334444555553 45678899999854
No 286
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.32 E-value=1.6e-12 Score=118.29 Aligned_cols=132 Identities=17% Similarity=0.058 Sum_probs=75.9
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeeccccch----
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFRHK---- 242 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~~~---- 242 (320)
.++++++.+.| +...+++++++. |++++|+||||||||||+++|+ |+++ |++|+|.+++.+..
T Consensus 10 ~l~i~~v~~~~----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 10 VLRTENLNVYY----GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFN-RLNDLIPGFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred EEEEeeeEEEE----CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHH-hhhcccCCCCCceEEEECCEEcccccc
Confidence 56677665544 234567777765 9999999999999999999999 9976 37899998754321
Q ss_pred -hhhhcCcceeeeccccCC-ccccceeecCCC-CCCCHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138 243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~ 312 (320)
.......++.++|+...+ .+..+++..... .... ....+...++++.+++. .+.+..++.+..|||++.
T Consensus 85 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~ 157 (264)
T PRK14243 85 DPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQ 157 (264)
T ss_pred ChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHH
Confidence 111122344555543322 244444433221 1111 11122233333333331 113456788999999653
No 287
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=8.6e-13 Score=115.35 Aligned_cols=65 Identities=18% Similarity=0.089 Sum_probs=51.9
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC---CCCceeeecccc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD---NGRGHARQKLFR 240 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~---~~~G~i~~~~~~ 240 (320)
.+.++++.+.|........++++++|. |++++|+||||||||||+++|+ |+++ |++|++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALA-NRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhc-ccCCCCCCcceEEEECCEE
Confidence 456677777665543345567777765 9999999999999999999999 9999 899999987543
No 288
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.32 E-value=2.4e-12 Score=116.20 Aligned_cols=132 Identities=17% Similarity=0.050 Sum_probs=75.7
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCC-----Cceeeeccccch-----
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNG-----RGHARQKLFRHK----- 242 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~-----~G~i~~~~~~~~----- 242 (320)
++++++.+.| +...++++++|. |++++|+||||||||||+++|+ |+++|. +|+|.+++.+..
T Consensus 5 l~~~~l~~~~----~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~~~~G~v~~~g~~~~~~~~~ 79 (251)
T PRK14249 5 IKIRGVNFFY----HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALN-RMNDIVSGARLEGAVLLDNENIYSPNLD 79 (251)
T ss_pred EEEEEEEEEE----CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHh-cccCccccCCcccEEEECCEEccccccC
Confidence 4455554443 334467777765 9999999999999999999999 999987 699988754321
Q ss_pred hhhhcCcceeeeccccCC-ccccceeecCCC-CCCC-HHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138 243 HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSLD-WVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 ~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~~-~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~ 312 (320)
.......++.++|+...+ .+..+++..... .... .....+...++++.+++. .+.+..++.+..|||++.
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 80 VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQ 153 (251)
T ss_pred hHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHH
Confidence 011123345555554332 244444433221 1111 111122233333333321 123567889999999653
No 289
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.32 E-value=1.3e-12 Score=115.46 Aligned_cols=47 Identities=28% Similarity=0.376 Sum_probs=41.5
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR 240 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~ 240 (320)
..+++++|. |++++|+||||||||||+++|+ |+++|.+|++.+++..
T Consensus 18 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~-G~~~~~~G~i~~~g~~ 67 (220)
T cd03245 18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLA-GLYKPTSGSVLLDGTD 67 (220)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCcCCCCCeEEECCEE
Confidence 467777765 9999999999999999999999 9999999999987543
No 290
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.31 E-value=2.1e-12 Score=116.51 Aligned_cols=113 Identities=16% Similarity=0.095 Sum_probs=68.5
Q ss_pred ccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCcceeeeccccC--Cccccc
Q psy15138 194 RVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGRTSSVGNDILG--FDSVGN 265 (320)
Q Consensus 194 ~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~v~~~~~~~~~--~~~~~~ 265 (320)
.+++++|. |++++|+||||||||||+++|+ |++++ +|+|.+++.+.. .......++.++|.... ..+..+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~-Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMA-GLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHc-CCCCC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence 45556554 9999999999999999999999 99865 899998764311 11111223344443211 123444
Q ss_pred eeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 266 VVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 266 ~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
++............. .+++.++++.+|+.+..++.+..|||++
T Consensus 89 nl~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 131 (248)
T PRK03695 89 YLTLHQPDKTRTEAV---ASALNEVAEALGLDDKLGRSVNQLSGGE 131 (248)
T ss_pred HHHhcCccCCCcHHH---HHHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 443322111111111 2334455566677778889999999964
No 291
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.31 E-value=5.3e-13 Score=108.93 Aligned_cols=98 Identities=27% Similarity=0.215 Sum_probs=62.4
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCcceeeeccccCCc--cccceeecCCCCCC
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGRTSSVGNDILGFD--SVGNVVNKPEHGSL 275 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~v~~~~~~~~~~~--~~~~~v~~~~~~~~ 275 (320)
.|++++|+||||||||||+++|+ |..+|.+|.|.++..+.. .......++.++++...+. ++.++
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~-g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~--------- 79 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALA-GLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN--------- 79 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHT-TSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH---------
T ss_pred CCCEEEEEccCCCccccceeeec-ccccccccccccccccccccccccccccccccccccccccccccccc---------
Confidence 39999999999999999999999 999999999998754322 1223344455555422221 11111
Q ss_pred CHHhHHHHHHHHHHHhcccCC-ccccccccccccCCC
Q psy15138 276 DWVKICERSAKVITFIDLAGH-ERYLKTTVFGMTGHV 311 (320)
Q Consensus 276 ~~~~~~~~~~~~l~~l~l~gl-~~~~~~~~~~LSG~~ 311 (320)
...+...++++.+++.+. ....++.+..|||++
T Consensus 80 ---~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge 113 (137)
T PF00005_consen 80 ---ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGE 113 (137)
T ss_dssp ---HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHH
T ss_pred ---cccccccccccccccccccccccccccchhhHHH
Confidence 223345556666655442 334455559999854
No 292
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.31 E-value=2e-12 Score=118.17 Aligned_cols=134 Identities=16% Similarity=0.121 Sum_probs=77.7
Q ss_pred eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeeccccch---
Q psy15138 174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFRHK--- 242 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~~~--- 242 (320)
..++++++.+.|. ...+++++++. |++++|+|+||||||||+++|+ |+++ |++|+|.+++.+..
T Consensus 23 ~~l~~~~l~~~~~----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~-Gl~~~~~~~~~~G~i~~~g~~~~~~~ 97 (271)
T PRK14238 23 VVFDTQNLNLWYG----EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLN-RMVELVPSVKTTGKILYRDQNIFDKS 97 (271)
T ss_pred eEEEEeeeEEEEC----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHH-hhccCCCCCCCceeEEECCEEccccc
Confidence 3567776655442 23456666665 9999999999999999999999 9987 69999998764321
Q ss_pred --hhhhcCcceeeeccccCC-ccccceeecCCC-CCC-CHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138 243 --HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 --~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~ 312 (320)
.......++.++|+...| .++.+++..... ... ......+...++++.+++. ++.+..++.+..|||++.
T Consensus 98 ~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 98 YSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred ccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHH
Confidence 111123344455543322 244444433211 111 1111112223333333221 345567889999999653
No 293
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.31 E-value=1.8e-12 Score=127.05 Aligned_cols=84 Identities=23% Similarity=0.294 Sum_probs=72.2
Q ss_pred CCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCC-CcEEEEeCCCCC--ChhHHH
Q psy15138 11 TAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSV-PVFVVVTKIDMC--PPNVLQ 85 (320)
Q Consensus 11 ~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~--~~~~le 85 (320)
+.+..+.|+|+|||++|. |..++..+|.+++ ||++++|+++||++|+.++..+++ |.++++||+|+. +.+.++
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~all--VVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~ 181 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAIL--LIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFE 181 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEE--EEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHH
Confidence 345678999999999998 8999999999999 999999999999999999999999 567899999997 455677
Q ss_pred HHHHHHHHhhc
Q psy15138 86 DTLKLLVRILK 96 (320)
Q Consensus 86 ~~l~~~~~~l~ 96 (320)
+..+++...++
T Consensus 182 ~i~~~l~~~~~ 192 (474)
T PRK05124 182 RIREDYLTFAE 192 (474)
T ss_pred HHHHHHHHHHH
Confidence 77777766554
No 294
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=2.9e-12 Score=117.39 Aligned_cols=134 Identities=14% Similarity=0.043 Sum_probs=77.9
Q ss_pred eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch---
Q psy15138 174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK--- 242 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~--- 242 (320)
+++.++++++.|. ...++++++|. |++++|+||||||||||+++|+ |+++| .+|+|.+++....
T Consensus 20 ~~l~i~nl~~~~~----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~-Gl~~p~~~~~~~G~i~~~g~~i~~~~ 94 (276)
T PRK14271 20 PAMAAVNLTLGFA----GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLN-RMNDKVSGYRYSGDVLLGGRSIFNYR 94 (276)
T ss_pred cEEEEeeEEEEEC----CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh-ccCCcCCCCCCceEEEECCEEccccc
Confidence 4667777666553 34567777765 9999999999999999999999 99986 6999998754311
Q ss_pred -hhhhcCcceeeeccccCC-ccccceeecCCC--CCCCHHhHHHHHHHHHHHhcccC-CccccccccccccCCCC
Q psy15138 243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLAG-HERYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~g-l~~~~~~~~~~LSG~~~ 312 (320)
.......+..++|+...| .++.+++..... ......+..+...++++.+++.. +.+.+++.+..|||++.
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~ 169 (276)
T PRK14271 95 DVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQ 169 (276)
T ss_pred hhHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHH
Confidence 111122344444443222 244444433211 11122222222333334333321 11346788999999654
No 295
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=2.3e-12 Score=118.66 Aligned_cols=133 Identities=15% Similarity=0.067 Sum_probs=76.5
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeeccccch----
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFRHK---- 242 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~~~---- 242 (320)
.++++++.+.| +...++++++|. |++++|+||||||||||+++|+ |+.+ |++|+|.+++....
T Consensus 39 ~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~-Gl~~~~p~~~~~G~I~~~g~~i~~~~~ 113 (286)
T PRK14275 39 HVVAKNFSIYY----GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAIN-RMNDLIPSCHTTGALMFDGEDIYGKFT 113 (286)
T ss_pred EEEEeeeEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cccccCCCCCCceEEEECCEEhhhccc
Confidence 45666655444 333466666665 9999999999999999999999 9864 48999998754311
Q ss_pred -hhhhcCcceeeeccccCC-ccccceeecCCC-CCC-CHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138 243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~ 312 (320)
.......++.++|+...+ .++.+++..... ... ......+...++++.+++. ++.+..++.+..|||++.
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 114 DEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQ 188 (286)
T ss_pred chHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHH
Confidence 011122344445543222 244444443211 111 1111222333344433332 124567888999999654
No 296
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.30 E-value=2.2e-12 Score=115.47 Aligned_cols=118 Identities=16% Similarity=0.167 Sum_probs=67.8
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCcceeeeccccCC-ccccc
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGRTSSVGNDILGF-DSVGN 265 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~v~~~~~~~~~~-~~~~~ 265 (320)
.++++++|. |++++|+||||||||||+++|+ |+++|.+|++.+++.+.. .......++..+|+...+ .++.+
T Consensus 17 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~-G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 95 (238)
T cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLE-RFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAE 95 (238)
T ss_pred cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHh-ccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHH
Confidence 356666665 9999999999999999999999 999999999998764311 111112244444443222 24444
Q ss_pred eeecCCCCCCCHHhHHHHH--HHHHHHhccc--CCccccccccccccCCCC
Q psy15138 266 VVNKPEHGSLDWVKICERS--AKVITFIDLA--GHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 266 ~v~~~~~~~~~~~~~~~~~--~~~l~~l~l~--gl~~~~~~~~~~LSG~~~ 312 (320)
++....... ......+.. ..+.++++.. ++....+..+..|||++.
T Consensus 96 ~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~ 145 (238)
T cd03249 96 NIRYGKPDA-TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQK 145 (238)
T ss_pred HhhccCCCC-CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHH
Confidence 443322111 111111111 0122222222 445566778899999653
No 297
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=3.3e-12 Score=115.39 Aligned_cols=132 Identities=15% Similarity=0.028 Sum_probs=76.5
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch----
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK---- 242 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~---- 242 (320)
.++++++++.| +...++++++|. |++++|+||||||||||+++|+ |++++ ++|+|.+++.+..
T Consensus 6 ~i~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 80 (253)
T PRK14261 6 ILSTKNLNLWY----GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFN-RMNDLIPGCRITGDILYNGENIMDSGA 80 (253)
T ss_pred eEEEeeeEEEE----CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHh-ccccCCCCCCcceEEEECCEEcccccc
Confidence 45666665444 334567777765 9999999999999999999999 98763 4899998754321
Q ss_pred -hhhhcCcceeeeccccCC-ccccceeecCCC-CC-CCHHhHHHHHHHHHHHhccc-CCccccccccccccCCC
Q psy15138 243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GS-LDWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHV 311 (320)
Q Consensus 243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~-~~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~ 311 (320)
.......++.++|+...| .++.+++..... .. .......+...++++.+++. ++.+..++.+..|||++
T Consensus 81 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 154 (253)
T PRK14261 81 DVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQ 154 (253)
T ss_pred chhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHH
Confidence 111123345555553322 244444433211 11 11112222333344444332 12345788899999964
No 298
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=3.1e-12 Score=115.33 Aligned_cols=132 Identities=20% Similarity=0.071 Sum_probs=74.2
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch----h
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK----H 243 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~----~ 243 (320)
++++++.+.| +...++++++|. |++++|+||||||||||+++|+ |+++| ++|++.+++.+.. .
T Consensus 4 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~~~~G~v~~~g~~~~~~~~~ 78 (249)
T PRK14253 4 FNIENLDLFY----GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLN-RMNDLIEGVKITGKLTMDGEDIYGNIDV 78 (249)
T ss_pred EEEeccEEEE----CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHH-hhcccccCCCCceEEEECCEEcccccch
Confidence 4555554443 334567777775 9999999999999999999999 99986 5899998754321 1
Q ss_pred hhhcCcceeeeccccCC-ccccceeecCCC-CCC-CHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138 244 EMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 244 ~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~ 312 (320)
......++.++|+...| .++.+++..... ... ......+...+.++.+++. .+.+..++.+.+|||++.
T Consensus 79 ~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~ 151 (249)
T PRK14253 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQ 151 (249)
T ss_pred HHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHH
Confidence 11122344444443322 233344432211 111 1111122233333333331 123466788999999653
No 299
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.30 E-value=2.3e-12 Score=117.26 Aligned_cols=108 Identities=14% Similarity=0.107 Sum_probs=65.6
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCCccccceeec
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNK 269 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~v~~ 269 (320)
.++++++|. |++++|+||||||||||+++|+ |+++|.+|++.+++. .++..+... .....+..+++..
T Consensus 38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~-Gl~~p~~G~I~~~g~-------~~~~~~~~~-~~~~~tv~enl~~ 108 (264)
T PRK13546 38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIG-GSLSPTVGKVDRNGE-------VSVIAISAG-LSGQLTGIENIEF 108 (264)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCcCCCceEEEECCE-------EeEEecccC-CCCCCcHHHHHHH
Confidence 456666664 9999999999999999999999 999999999987642 111111111 1111122333221
Q ss_pred CC-CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 270 PE-HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 270 ~~-~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.. ......... ...+.++++..++.+..++.+..|||++.
T Consensus 109 ~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~ 149 (264)
T PRK13546 109 KMLCMGFKRKEI---KAMTPKIIEFSELGEFIYQPVKKYSSGMR 149 (264)
T ss_pred HHHHcCCCHHHH---HHHHHHHHHHcCCchhhcCCcccCCHHHH
Confidence 11 111122222 22233445556667888899999999653
No 300
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=2.2e-12 Score=115.22 Aligned_cols=46 Identities=28% Similarity=0.294 Sum_probs=40.4
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF 239 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~ 239 (320)
.+++++++. |++++|+||||||||||+++|+ |+++|.+|+|.+++.
T Consensus 15 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~-Gl~~~~~G~v~~~g~ 63 (236)
T cd03253 15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLF-RFYDVSSGSILIDGQ 63 (236)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cccCCCCCEEEECCE
Confidence 356666654 9999999999999999999999 999999999998754
No 301
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=2.2e-12 Score=116.44 Aligned_cols=130 Identities=16% Similarity=0.045 Sum_probs=75.2
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeeccccch----
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFRHK---- 242 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~~~---- 242 (320)
.++++++.+.| +...+++++++. |++++|+||||||||||+++|+ |+++ |.+|+|.+++.+..
T Consensus 4 ~l~~~~l~~~~----~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~p~~~~~G~v~i~g~~~~~~~~ 78 (251)
T PRK14251 4 IISAKDVHLSY----GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLN-RMNDDIENIKITGEIKFEGQNIYGSKM 78 (251)
T ss_pred eEEEEeeEEEE----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh-hccccccCCCcceEEEECCEEcccccc
Confidence 45666655544 234566666665 9999999999999999999999 9987 47999998764321
Q ss_pred -hhhhcCcceeeeccccCC-ccccceeecCCC-CCC-CHHhHHHHHHHHHHHhcccCCc----cccccccccccCCCC
Q psy15138 243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLAGHE----RYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~gl~----~~~~~~~~~LSG~~~ 312 (320)
.......++.++|+...| .++.+++..... ... ......+ ++.++++.+++. +..++.+.+|||++.
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 79 DLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQ---RVEESLKQAAIWKETKDNLDRNAQAFSGGQQ 153 (251)
T ss_pred hHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHH---HHHHHHHHcCCCcchHHHhccChhhCCHHHH
Confidence 011122344444443222 244444433211 111 1111122 233344444542 456788999999653
No 302
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=3.4e-12 Score=115.14 Aligned_cols=132 Identities=17% Similarity=0.086 Sum_probs=73.5
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCc---CCC--CCceeeeccccch-----
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGE---LDN--GRGHARQKLFRHK----- 242 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~---l~~--~~G~i~~~~~~~~----- 242 (320)
++++++.+.| +...++++++|. |++++|+||||||||||+++|+ |+ ++| ++|+|.+++.+..
T Consensus 4 l~~~~~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~-Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14245 4 IDARDVNFWY----GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFN-RMNDLIPATRLEGEIRIDGRNIYDKGVQ 78 (250)
T ss_pred EEEEEEEEEE----CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHh-hhhcccCCCCCceEEEECCEeccccccc
Confidence 4555554433 334566777665 9999999999999999999999 97 454 5899998764321
Q ss_pred hhhhcCcceeeeccccCC-ccccceeecCCC-CCCC-HHhHHHHHHHHHHHhcccC-CccccccccccccCCCC
Q psy15138 243 HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSLD-WVKICERSAKVITFIDLAG-HERYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 ~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~~-~~~~~~~~~~~l~~l~l~g-l~~~~~~~~~~LSG~~~ 312 (320)
.......++.++|+...+ .+..+++..... .... .....+...++++.+++.. +.+..++.+..|||++.
T Consensus 79 ~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQ 152 (250)
T ss_pred HHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHH
Confidence 111122344445543222 233344432211 1111 1112223333444333311 13457888999999653
No 303
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.6e-12 Score=124.87 Aligned_cols=78 Identities=24% Similarity=0.236 Sum_probs=60.4
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc---chhhhhcCcceeeeccccCC-ccccc
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR---HKHEMESGRTSSVGNDILGF-DSVGN 265 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~---~~~~~~~g~v~~~~~~~~~~-~~~~~ 265 (320)
+.+++.++. |++++|+|+||||||||+++|+ |+++|++|+|++++.+ ...+..+..++.++|+.+.| .+..+
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~-G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTire 413 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLL-GFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRE 413 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHh-CcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHH
Confidence 667777665 9999999999999999999999 9999999999998544 23334456677777776665 46666
Q ss_pred eeecCC
Q psy15138 266 VVNKPE 271 (320)
Q Consensus 266 ~v~~~~ 271 (320)
|+....
T Consensus 414 Ni~l~~ 419 (559)
T COG4988 414 NILLAR 419 (559)
T ss_pred HhhccC
Confidence 665544
No 304
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=2e-12 Score=116.55 Aligned_cols=130 Identities=16% Similarity=0.042 Sum_probs=74.9
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch----
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK---- 242 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~---- 242 (320)
.++++++.+.|. ...++++++|. |++++|+||||||||||+++|+ |+++| .+|++.+++.+..
T Consensus 3 ~l~~~~l~~~~~----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~-Gl~~~~~~~~~~G~i~i~g~~~~~~~~ 77 (250)
T PRK14262 3 IIEIENFSAYYG----EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSIN-RMNDHIPGFRVEGKIYFKGQDIYDPQL 77 (250)
T ss_pred eEEEEeeEEEeC----CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHh-ccccCCCCCCcceEEEECCEEcccchh
Confidence 355665554442 33466666665 9999999999999999999999 99874 8999998754321
Q ss_pred -hhhhcCcceeeeccccCC-ccccceeecCCC-CC-CCHHhHHHHHHHHHHHhcccCCc----cccccccccccCCCC
Q psy15138 243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GS-LDWVKICERSAKVITFIDLAGHE----RYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~-~~~~~~~~~~~~~l~~l~l~gl~----~~~~~~~~~LSG~~~ 312 (320)
.......++.++|+...+ .++.+++..... .. .......+. +.+.++.+|+. +..++.+.+|||++.
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~---~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 78 DVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRI---VEESLKKAALWDEVKSELNKPGTRLSGGQQ 152 (250)
T ss_pred hHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHH---HHHHHHHcCCCchhHHHHhCChhhcCHHHH
Confidence 111123344455543222 233344432211 11 111112222 33344444442 357888999999653
No 305
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=3.5e-12 Score=115.69 Aligned_cols=133 Identities=16% Similarity=0.055 Sum_probs=76.5
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch----
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK---- 242 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~---- 242 (320)
.++++++.+.| +...+++++++. |++++|+|+||||||||+++|+ |+++| ++|+|.+++.+..
T Consensus 7 ~l~~~~l~~~~----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~-Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (259)
T PRK14260 7 AIKVKDLSFYY----NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLN-RISELEGPVKVEGVVDFFGQNIYDPRI 81 (259)
T ss_pred eEEEEEEEEEE----CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHH-hhcCcccCCccceEEEECCEecccccc
Confidence 45666665444 234567777765 9999999999999999999999 99885 4899998754321
Q ss_pred -hhhhcCcceeeeccccCC-ccccceeecCCC--CCCCHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138 243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPEH--GSLDWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~ 312 (320)
.......++.++|+...| .++.+++..... .........+...++++.+++. .+.+..++.+..|||++.
T Consensus 82 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 156 (259)
T PRK14260 82 NINRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQ 156 (259)
T ss_pred chHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHH
Confidence 111122344555543322 244444432211 1112122222233333333331 123567888999999653
No 306
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.29 E-value=2.9e-12 Score=113.31 Aligned_cols=47 Identities=23% Similarity=0.263 Sum_probs=41.7
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR 240 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~ 240 (320)
.++++++|. |++++|+||||||||||+++|+ |.++|.+|+|.+++..
T Consensus 18 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~ 67 (221)
T cd03244 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSSGSILIDGVD 67 (221)
T ss_pred ccccceEEEECCCCEEEEECCCCCCHHHHHHHHH-cCCCCCCCEEEECCEE
Confidence 467777775 9999999999999999999999 9999999999987543
No 307
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=3.7e-12 Score=115.74 Aligned_cols=119 Identities=17% Similarity=-0.026 Sum_probs=70.0
Q ss_pred cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch-----hhhhcCcceeeecc
Q psy15138 190 LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK-----HEMESGRTSSVGND 256 (320)
Q Consensus 190 ~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~-----~~~~~g~v~~~~~~ 256 (320)
+...++++++|. |++++|+||||||||||+++|+ |+++| .+|+|.+++.+.. .......+..++|+
T Consensus 19 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 97 (261)
T PRK14263 19 GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLN-RMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQ 97 (261)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHH-cccccccCCCCceEEEECCEeccccccchHhhhhceEEEecC
Confidence 334567777765 9999999999999999999999 99986 7999998765321 11112234444554
Q ss_pred ccCC-ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc----cccccccccccCCCC
Q psy15138 257 ILGF-DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE----RYLKTTVFGMTGHVP 312 (320)
Q Consensus 257 ~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~----~~~~~~~~~LSG~~~ 312 (320)
...| .+..+++..............+ ++.++++..++. +..++.+..|||++.
T Consensus 98 ~~~~~~tv~enl~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 155 (261)
T PRK14263 98 PNPFSMSIFDNVAFGLRLNRYKGDLGD---RVKHALQGAALWDEVKDKLKVSGLSLSGGQQ 155 (261)
T ss_pred CccccccHHHHHHHHHhhcCchHHHHH---HHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 3322 2344444332211101111222 333444444443 345678889999653
No 308
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.29 E-value=2.4e-12 Score=129.93 Aligned_cols=90 Identities=22% Similarity=0.159 Sum_probs=65.4
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc---chhhhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR---HKHEMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~---~~~~~~~g~ 249 (320)
++++++++.+. +...+++++++. |+++||+||||||||||+++|+ |++ |.+|+|.+++.+ ...+..+..
T Consensus 350 i~~~~vsf~~~---~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~-g~~-p~~G~I~i~g~~i~~~~~~~lr~~ 424 (588)
T PRK11174 350 IEAEDLEILSP---DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALL-GFL-PYQGSLKINGIELRELDPESWRKH 424 (588)
T ss_pred EEEEeeEEecc---CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCC-CCCcEEEECCEecccCCHHHHHhh
Confidence 45555543322 224567777775 9999999999999999999999 999 899999998644 222333456
Q ss_pred ceeeeccccCC-ccccceeecC
Q psy15138 250 TSSVGNDILGF-DSVGNVVNKP 270 (320)
Q Consensus 250 v~~~~~~~~~~-~~~~~~v~~~ 270 (320)
++.++|+.+.| .+..+|+..+
T Consensus 425 i~~v~Q~~~LF~~TI~eNI~~g 446 (588)
T PRK11174 425 LSWVGQNPQLPHGTLRDNVLLG 446 (588)
T ss_pred eEEecCCCcCCCcCHHHHhhcC
Confidence 77777777666 5667777665
No 309
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.29 E-value=2.5e-12 Score=132.53 Aligned_cols=92 Identities=22% Similarity=0.247 Sum_probs=66.2
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~ 249 (320)
++++++++.|... ...+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+. .....+..
T Consensus 478 I~~~~vsf~y~~~--~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~-gl~~p~~G~I~idg~~i~~~~~~~lr~~ 554 (710)
T TIGR03796 478 VELRNITFGYSPL--EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVA-GLYQPWSGEILFDGIPREEIPREVLANS 554 (710)
T ss_pred EEEEEEEEecCCC--CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEECCEeHHHCCHHHHHhh
Confidence 5566666655421 23467777775 9999999999999999999999 99999999999986542 12223455
Q ss_pred ceeeeccccCC-ccccceeecC
Q psy15138 250 TSSVGNDILGF-DSVGNVVNKP 270 (320)
Q Consensus 250 v~~~~~~~~~~-~~~~~~v~~~ 270 (320)
++.++|+...| .+..+++...
T Consensus 555 i~~v~Q~~~lf~gTi~eNi~l~ 576 (710)
T TIGR03796 555 VAMVDQDIFLFEGTVRDNLTLW 576 (710)
T ss_pred eeEEecCChhhhccHHHHhhCC
Confidence 66677776655 4566776553
No 310
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.29 E-value=2.9e-11 Score=112.76 Aligned_cols=120 Identities=19% Similarity=0.180 Sum_probs=85.5
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc------hhhhhcCcceeeeccccC-C-
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH------KHEMESGRTSSVGNDILG-F- 260 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~------~~~~~~g~v~~~~~~~~~-~- 260 (320)
..+++++++. |+.++|||.||||||||-..|. +++++. |+|++.+.+. .....+..+..+||++++ +
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~all-rL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLs 377 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALL-RLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLS 377 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHH-hhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCC
Confidence 5678888886 9999999999999999999999 998876 9999986541 111234556677888776 3
Q ss_pred --ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCCCC
Q psy15138 261 --DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHVPD 313 (320)
Q Consensus 261 --~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~~~ 313 (320)
.+++.++..+..-.-+.....++.+++.+.+..+|+. .-++++|++.||++..
T Consensus 378 PRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQ 433 (534)
T COG4172 378 PRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQ 433 (534)
T ss_pred cccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhh
Confidence 2345555555442222223345566677777778885 5689999999998753
No 311
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.28 E-value=2.9e-12 Score=129.08 Aligned_cols=93 Identities=20% Similarity=0.222 Sum_probs=66.9
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g 248 (320)
.++++++++.|... ...+++++++. |++++|+||||||||||+++|+ |+++|.+|+|.+++.+. .......
T Consensus 341 ~i~~~~vsf~y~~~--~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~-gl~~p~~G~I~i~g~~i~~~~~~~~~~ 417 (582)
T PRK11176 341 DIEFRNVTFTYPGK--EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLT-RFYDIDEGEILLDGHDLRDYTLASLRN 417 (582)
T ss_pred eEEEEEEEEecCCC--CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHH-hccCCCCceEEECCEEhhhcCHHHHHh
Confidence 35666666555321 13467777775 9999999999999999999999 99999999999986542 1223345
Q ss_pred cceeeeccccCC-ccccceeecC
Q psy15138 249 RTSSVGNDILGF-DSVGNVVNKP 270 (320)
Q Consensus 249 ~v~~~~~~~~~~-~~~~~~v~~~ 270 (320)
.++.++|+...| .+..+++..+
T Consensus 418 ~i~~v~Q~~~lf~~Ti~~Ni~~~ 440 (582)
T PRK11176 418 QVALVSQNVHLFNDTIANNIAYA 440 (582)
T ss_pred hceEEccCceeecchHHHHHhcC
Confidence 567777776655 4566776654
No 312
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.28 E-value=2.3e-12 Score=132.38 Aligned_cols=92 Identities=20% Similarity=0.223 Sum_probs=66.0
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~ 249 (320)
++++++++.|... ...++++++++ |++++|+||||||||||+++|+ |+++|++|+|.+++.+. .....+..
T Consensus 464 I~~~~vsf~Y~~~--~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~-gl~~p~~G~I~idg~~l~~~~~~~lr~~ 540 (694)
T TIGR03375 464 IEFRNVSFAYPGQ--ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLL-GLYQPTEGSVLLDGVDIRQIDPADLRRN 540 (694)
T ss_pred EEEEEEEEEeCCC--CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCceEEECCEEhhhCCHHHHHhc
Confidence 5566666655321 23467777775 9999999999999999999999 99999999999986542 12223455
Q ss_pred ceeeeccccCC-ccccceeecC
Q psy15138 250 TSSVGNDILGF-DSVGNVVNKP 270 (320)
Q Consensus 250 v~~~~~~~~~~-~~~~~~v~~~ 270 (320)
++.++|+...| .+..+++..+
T Consensus 541 i~~v~Q~~~lf~~TI~eNi~~~ 562 (694)
T TIGR03375 541 IGYVPQDPRLFYGTLRDNIALG 562 (694)
T ss_pred cEEECCChhhhhhhHHHHHhCC
Confidence 66677776655 4566666654
No 313
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.28 E-value=4.4e-12 Score=114.47 Aligned_cols=133 Identities=17% Similarity=0.072 Sum_probs=75.1
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC--C---CCceeeeccccch----
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD--N---GRGHARQKLFRHK---- 242 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~--~---~~G~i~~~~~~~~---- 242 (320)
+++++++.+.|. ...++++++|. |++++|+||||||||||+++|+ |+.+ | ++|+|.+++.+..
T Consensus 5 ~l~~~~l~~~~~----~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~p~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14239 5 ILQVSDLSVYYN----KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSIN-RMNDLNPEVTITGSIVYNGHNIYSPRT 79 (252)
T ss_pred eEEEEeeEEEEC----CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh-cccccCCCCCccceEEECCEECcCccc
Confidence 456666654442 34566777765 9999999999999999999999 9853 6 4899998754321
Q ss_pred -hhhhcCcceeeeccccCC-ccccceeecCCC-CCCC-HHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138 243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSLD-WVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~~-~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~ 312 (320)
.......++.++|+...| .++.+++..... .... .....+....+++.+++. ++.+..++.+..|||++.
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 80 DTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQ 154 (252)
T ss_pred chHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHH
Confidence 111122344445543322 244444433211 1111 111222233333333321 123456888999999653
No 314
>PRK00049 elongation factor Tu; Reviewed
Probab=99.28 E-value=7.1e-12 Score=120.46 Aligned_cols=87 Identities=23% Similarity=0.235 Sum_probs=73.3
Q ss_pred CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcE-EEEeCCCCCC-hhHHHHH
Q psy15138 12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVF-VVVTKIDMCP-PNVLQDT 87 (320)
Q Consensus 12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~-v~lnk~Dl~~-~~~le~~ 87 (320)
....+.|+|+|||++|+ |..++..+|.+++ ||++++|+.++|++|+.++..+++|.+ +++||+|+.+ .+.++..
T Consensus 73 ~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~ll--VVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~ 150 (396)
T PRK00049 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAIL--VVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELV 150 (396)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhccCCEEEE--EEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHH
Confidence 34568999999999999 8999999999999 999999999999999999999999976 6899999985 3445555
Q ss_pred HHHHHHhhcCCCc
Q psy15138 88 LKLLVRILKSPGC 100 (320)
Q Consensus 88 l~~~~~~l~~~~~ 100 (320)
.+++...+...++
T Consensus 151 ~~~i~~~l~~~~~ 163 (396)
T PRK00049 151 EMEVRELLSKYDF 163 (396)
T ss_pred HHHHHHHHHhcCC
Confidence 5677777765444
No 315
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1e-12 Score=110.81 Aligned_cols=50 Identities=26% Similarity=0.242 Sum_probs=42.8
Q ss_pred ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138 189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF 239 (320)
Q Consensus 189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~ 239 (320)
.+.+..+.+.+|. |+.+.|.||||||||||||+|+ |+++|.+|+|+++..
T Consensus 12 R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRila-GLl~p~~G~v~~~~~ 64 (209)
T COG4133 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILA-GLLRPDAGEVYWQGE 64 (209)
T ss_pred cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHH-cccCCCCCeEEecCC
Confidence 3445566666665 9999999999999999999999 999999999999743
No 316
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.28 E-value=4.7e-12 Score=114.28 Aligned_cols=61 Identities=21% Similarity=0.194 Sum_probs=47.9
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCc--CCCCCceeeecccc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGE--LDNGRGHARQKLFR 240 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~--l~~~~G~i~~~~~~ 240 (320)
.++++++.+.| +...++++++|. |++++|+||||||||||+++|+ |+ ++|.+|++.+++.+
T Consensus 7 ~l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~-Gl~~~~~~~G~i~~~g~~ 72 (252)
T CHL00131 7 ILEIKNLHASV----NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIA-GHPAYKILEGDILFKGES 72 (252)
T ss_pred eEEEEeEEEEe----CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHc-CCCcCcCCCceEEECCEE
Confidence 45666655444 234567777775 9999999999999999999999 98 57999999987543
No 317
>PLN03211 ABC transporter G-25; Provisional
Probab=99.28 E-value=2.5e-12 Score=130.85 Aligned_cols=121 Identities=21% Similarity=0.171 Sum_probs=75.2
Q ss_pred eecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCC--CceeeeccccchhhhhcCcceeeeccccCC--
Q psy15138 188 QYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNG--RGHARQKLFRHKHEMESGRTSSVGNDILGF-- 260 (320)
Q Consensus 188 ~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~--~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~-- 260 (320)
.++.+.+++++++. |++++|+||||||||||+++|+ |.++|+ +|+|.+++.+..... ...++.++|+...+
T Consensus 77 ~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa-G~~~~~~~sG~I~inG~~~~~~~-~~~i~yv~Q~~~l~~~ 154 (659)
T PLN03211 77 QIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA-GRIQGNNFTGTILANNRKPTKQI-LKRTGFVTQDDILYPH 154 (659)
T ss_pred cCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh-CCCCCCceeEEEEECCEECchhh-ccceEEECcccccCCc
Confidence 34456678888775 9999999999999999999999 999885 899999865422111 12244444443322
Q ss_pred ccccceeecCCCC----CCCHHhHHHHHHHHHHHhcccCCcccc-----ccccccccCCCCC
Q psy15138 261 DSVGNVVNKPEHG----SLDWVKICERSAKVITFIDLAGHERYL-----KTTVFGMTGHVPD 313 (320)
Q Consensus 261 ~~~~~~v~~~~~~----~~~~~~~~~~~~~~l~~l~l~gl~~~~-----~~~~~~LSG~~~~ 313 (320)
.++.+++...... .....+. .+++.++++.+|+.+.. +..+.+|||++..
T Consensus 155 lTV~E~l~~~a~~~~~~~~~~~~~---~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerq 213 (659)
T PLN03211 155 LTVRETLVFCSLLRLPKSLTKQEK---ILVAESVISELGLTKCENTIIGNSFIRGISGGERK 213 (659)
T ss_pred CCHHHHHHHHHHhCCCCCCCHHHH---HHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhh
Confidence 3555555432211 1122222 23344455555665544 3457889998754
No 318
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.28 E-value=3.2e-11 Score=111.08 Aligned_cols=47 Identities=23% Similarity=0.220 Sum_probs=38.9
Q ss_pred CCccchhhhccceecCCCC-ch-hHHHHHHHHHHcCCCcEEEEeCCCCCCh
Q psy15138 33 ASPADHSMLQSKVGANAGI-VG-MTKEHLGLALALSVPVFVVVTKIDMCPP 81 (320)
Q Consensus 33 ~~~~d~~~l~~vv~a~~g~-~~-~t~~~l~l~~~l~i~~~v~lnk~Dl~~~ 81 (320)
++++|.+++ |++++++. .. ...+++..+...++|+++|+||+|+.+.
T Consensus 76 ~anvD~vll--V~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~ 124 (287)
T cd01854 76 AANVDQLVI--VVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDD 124 (287)
T ss_pred EEeCCEEEE--EEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCCh
Confidence 788999999 99999876 32 3345788888889999999999999765
No 319
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.28 E-value=2.8e-12 Score=129.44 Aligned_cols=91 Identities=20% Similarity=0.148 Sum_probs=66.7
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~ 249 (320)
++++++++.|.. ...++++++++ |++++|+|+||||||||+++|+ |+++|.+|.|.+++.+. ........
T Consensus 341 i~~~~v~f~y~~---~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~-gl~~p~~G~I~idg~~i~~~~~~~l~~~ 416 (592)
T PRK10790 341 IDIDNVSFAYRD---DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLM-GYYPLTEGEIRLDGRPLSSLSHSVLRQG 416 (592)
T ss_pred EEEEEEEEEeCC---CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHh-cccCCCCceEEECCEEhhhCCHHHHHhh
Confidence 566666665532 13467777775 9999999999999999999999 99999999999986542 12233456
Q ss_pred ceeeeccccCC-ccccceeecC
Q psy15138 250 TSSVGNDILGF-DSVGNVVNKP 270 (320)
Q Consensus 250 v~~~~~~~~~~-~~~~~~v~~~ 270 (320)
++.++|+...| .+..+++..+
T Consensus 417 i~~v~Q~~~lF~~Ti~~NI~~~ 438 (592)
T PRK10790 417 VAMVQQDPVVLADTFLANVTLG 438 (592)
T ss_pred eEEEccCCccccchHHHHHHhC
Confidence 66777776666 4566776664
No 320
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.28 E-value=3.5e-12 Score=128.33 Aligned_cols=92 Identities=20% Similarity=0.176 Sum_probs=64.4
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~ 249 (320)
++++++++.|... ...+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+. .....+..
T Consensus 339 i~~~~v~f~y~~~--~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~-g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 415 (574)
T PRK11160 339 LTLNNVSFTYPDQ--PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT-RAWDPQQGEILLNGQPIADYSEAALRQA 415 (574)
T ss_pred EEEEEEEEECCCC--CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCceEEECCEEhhhCCHHHHHhh
Confidence 5666666655321 13467777775 9999999999999999999999 99999999999986541 12223345
Q ss_pred ceeeeccccCC-ccccceeecC
Q psy15138 250 TSSVGNDILGF-DSVGNVVNKP 270 (320)
Q Consensus 250 v~~~~~~~~~~-~~~~~~v~~~ 270 (320)
++.++|+...| .+..+++..+
T Consensus 416 i~~v~Q~~~lf~~ti~~Ni~~~ 437 (574)
T PRK11160 416 ISVVSQRVHLFSATLRDNLLLA 437 (574)
T ss_pred eeEEcccchhhcccHHHHhhcC
Confidence 56666666554 4555665543
No 321
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.27 E-value=3.5e-12 Score=127.11 Aligned_cols=93 Identities=24% Similarity=0.253 Sum_probs=65.5
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g 248 (320)
.++++++++.|... ...++++.+++ |++++|+||||||||||+++|+ |+++|++|+|.+++.+. .....+.
T Consensus 320 ~i~~~~v~f~y~~~--~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~-g~~~~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 320 SLEFSGLSVAYPGR--RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLL-GFVDPTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred eEEEEEEEEECCCC--CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEECCEehhhCCHHHHHh
Confidence 35566666555321 12467777775 9999999999999999999999 99999999999986541 1222334
Q ss_pred cceeeeccccCC-ccccceeecC
Q psy15138 249 RTSSVGNDILGF-DSVGNVVNKP 270 (320)
Q Consensus 249 ~v~~~~~~~~~~-~~~~~~v~~~ 270 (320)
.++.++|+...| .+..+++..+
T Consensus 397 ~i~~v~Q~~~lf~~ti~~Ni~~~ 419 (529)
T TIGR02857 397 QIAWVPQHPFLFAGTIAENIRLA 419 (529)
T ss_pred heEEEcCCCcccCcCHHHHHhcc
Confidence 566667766555 4556666554
No 322
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.27 E-value=2.7e-12 Score=132.15 Aligned_cols=91 Identities=14% Similarity=0.095 Sum_probs=66.1
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~ 249 (320)
++++++++.|.. ...+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+. .....+..
T Consensus 474 I~~~~vsf~y~~---~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~-gl~~p~~G~I~idg~~i~~~~~~~lr~~ 549 (708)
T TIGR01193 474 IVINDVSYSYGY---GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLV-GFFQARSGEILLNGFSLKDIDRHTLRQF 549 (708)
T ss_pred EEEEEEEEEcCC---CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHh-ccCCCCCcEEEECCEEHHHcCHHHHHHh
Confidence 566666666642 24567777775 9999999999999999999999 99999999999986542 11222345
Q ss_pred ceeeeccccCC-ccccceeecC
Q psy15138 250 TSSVGNDILGF-DSVGNVVNKP 270 (320)
Q Consensus 250 v~~~~~~~~~~-~~~~~~v~~~ 270 (320)
++.++|+...| .+..+++..+
T Consensus 550 i~~v~Q~~~lf~gTI~eNi~l~ 571 (708)
T TIGR01193 550 INYLPQEPYIFSGSILENLLLG 571 (708)
T ss_pred eEEEecCceehhHHHHHHHhcc
Confidence 56666666555 4566776654
No 323
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.27 E-value=2.7e-12 Score=110.57 Aligned_cols=120 Identities=19% Similarity=0.180 Sum_probs=77.0
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCcceeeeccccC--C--c
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGRTSSVGNDILG--F--D 261 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~v~~~~~~~~~--~--~ 261 (320)
..+++..++. |+++.|+|.||||||||+++|+ |.+.|++|+|.+++.+. ....+-++++.+||++.. + .
T Consensus 19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~ia-G~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIA-GDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhh-CccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 3455555554 9999999999999999999999 99999999999986552 122234555566665532 2 3
Q ss_pred cccceeecCCCC----CCCHHhHHHHHH---HHHHHhcccCCccccccccccccCCCCC
Q psy15138 262 SVGNVVNKPEHG----SLDWVKICERSA---KVITFIDLAGHERYLKTTVFGMTGHVPD 313 (320)
Q Consensus 262 ~~~~~v~~~~~~----~~~~~~~~~~~~---~~l~~l~l~gl~~~~~~~~~~LSG~~~~ 313 (320)
+..+++.....+ .+...-..++.+ .-++-++ .|+++.+..++.-|||++..
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~-lgLenrL~~~iglLSGGQRQ 155 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNERRRSSFRERLARLG-LGLENRLSDRIGLLSGGQRQ 155 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcc-cchhhhhcChhhhccchHHH
Confidence 445555443321 122211112222 2222233 47789999999999998754
No 324
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=7.8e-12 Score=112.87 Aligned_cols=133 Identities=14% Similarity=0.039 Sum_probs=74.9
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC--C---CCceeeeccccch----
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD--N---GRGHARQKLFRHK---- 242 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~--~---~~G~i~~~~~~~~---- 242 (320)
+++++++++.|. ...++++++|. |++++|+||||||||||+++|+ |+++ | ++|+|.+++.+..
T Consensus 5 ~l~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14255 5 IITSSDVHLFYG----KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLN-RMNDLIPGVTITGNVSLRGQNIYAPNE 79 (252)
T ss_pred eEEEEeEEEEEC----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHh-cccccCCCCCcccEEEEcCEEcccccc
Confidence 456666655443 34567777765 9999999999999999999999 9875 4 5899998764321
Q ss_pred -hhhhcCcceeeeccccCC-ccccceeecCCC-CCC-CHHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138 243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~ 312 (320)
.......++.++|+...+ .+..+++..... ... ......+...+.++.+++. ++.+..++.+.+|||++.
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 80 DVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQ 154 (252)
T ss_pred cHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHH
Confidence 111122344445543222 233333332211 111 1111112223333333331 123567888999999653
No 325
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.27 E-value=2.8e-12 Score=130.60 Aligned_cols=133 Identities=16% Similarity=0.130 Sum_probs=82.4
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---h-h---
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---H-E--- 244 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~-~--- 244 (320)
.++++++.+.|.........+++++|. |++++|+||||||||||+++|+ |+++|++|++.+++.+.. . +
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~-Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILG-CLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 466676665553211123467777765 9999999999999999999999 999999999998764411 0 1
Q ss_pred hhcCcceeeeccccCCc--cccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 245 MESGRTSSVGNDILGFD--SVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 245 ~~~g~v~~~~~~~~~~~--~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
.....++..+|+...|+ +..+++..... ...... +..+++.++++.+|+.+..++.+..|||++
T Consensus 83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~---~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq 149 (648)
T PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERK---QRLLRAQELLQRLGLEDRVEYQPSQLSGGQ 149 (648)
T ss_pred HHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHCCChhhhcCCcccCCHHH
Confidence 11223444444433332 33333332211 111112 223345566666777888999999999965
No 326
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=7.3e-12 Score=113.78 Aligned_cols=133 Identities=17% Similarity=0.070 Sum_probs=75.8
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCC-----Cceeeeccccch----
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNG-----RGHARQKLFRHK---- 242 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~-----~G~i~~~~~~~~---- 242 (320)
.++++++.+.|. ...++++++|. |++++|+||||||||||+++|+ |+++|+ +|++.+++.+..
T Consensus 7 ~l~~~nl~~~~~----~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~-Gl~~~~g~i~~~G~i~~~g~~i~~~~~ 81 (261)
T PRK14258 7 AIKVNNLSFYYD----TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLN-RMNELESEVRVEGRVEFFNQNIYERRV 81 (261)
T ss_pred eEEEeeEEEEeC----CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHh-cccCCCCCccccceEEECCEEhhcccc
Confidence 466666655442 23466777765 9999999999999999999999 999985 788887654311
Q ss_pred -hhhhcCcceeeeccccCC-ccccceeecCCC-CCC-CHHhHHHHHHHHHHHhcccC-CccccccccccccCCCC
Q psy15138 243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLAG-HERYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~g-l~~~~~~~~~~LSG~~~ 312 (320)
.......++.++|+...| .+..+++..... ... ...+..+...++++.+++.+ +.+..++.+..|||++.
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 156 (261)
T PRK14258 82 NLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQ 156 (261)
T ss_pred chHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHH
Confidence 011123344445543222 233333332111 111 11121223334444444321 23456888999999653
No 327
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.26 E-value=3.6e-12 Score=127.78 Aligned_cols=125 Identities=14% Similarity=0.014 Sum_probs=76.8
Q ss_pred eeeeecCCCeeeeec-ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138 176 LRQRKLDNGLTGQYL-LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG 248 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~-~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g 248 (320)
++++++++.|..... ...+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. ......
T Consensus 338 i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~-g~~~p~~G~i~~~g~~i~~~~~~~~~~ 416 (555)
T TIGR01194 338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFC-GLYIPQEGEILLDGAAVSADSRDDYRD 416 (555)
T ss_pred EEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 556666655532110 12467777775 9999999999999999999999 999999999999864421 112234
Q ss_pred cceeeeccccCCc-cccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccc------cccCCCC
Q psy15138 249 RTSSVGNDILGFD-SVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVF------GMTGHVP 312 (320)
Q Consensus 249 ~v~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~------~LSG~~~ 312 (320)
.++.++|+...|. +..++. .... ..+++.+.++.+++.++....|. .|||++.
T Consensus 417 ~i~~v~q~~~lf~~ti~~n~--------~~~~---~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~ 476 (555)
T TIGR01194 417 LFSAIFADFHLFDDLIGPDE--------GEHA---SLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQ 476 (555)
T ss_pred hCcEEccChhhhhhhhhccc--------ccch---hHHHHHHHHHHcCCchhhcccccccCCcccCCHHHH
Confidence 4556666655442 222221 1111 12234445556666666655554 4888653
No 328
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.26 E-value=6.5e-12 Score=113.04 Aligned_cols=49 Identities=22% Similarity=0.180 Sum_probs=41.5
Q ss_pred ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcC--CCCCceeeecccc
Q psy15138 191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGEL--DNGRGHARQKLFR 240 (320)
Q Consensus 191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l--~~~~G~i~~~~~~ 240 (320)
...+++++++. |++++|+||||||||||+++|+ |++ +|++|++.+++.+
T Consensus 13 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~G~i~~~g~~ 66 (248)
T PRK09580 13 DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLA-GREDYEVTGGTVEFKGKD 66 (248)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHc-CCccCCCCceEEEECCCc
Confidence 34567777765 9999999999999999999999 995 6999999987643
No 329
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=6.2e-12 Score=121.08 Aligned_cols=64 Identities=31% Similarity=0.347 Sum_probs=61.3
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC 79 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~ 79 (320)
..++|+|+|||+-|. +--|+.-.|.++| ||++|+|+||||.|-+.+|++.++|++|++||+|..
T Consensus 55 ~~itFiDTPGHeAFt~mRaRGa~vtDIaIL--VVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~ 120 (509)
T COG0532 55 PGITFIDTPGHEAFTAMRARGASVTDIAIL--VVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKP 120 (509)
T ss_pred ceEEEEcCCcHHHHHHHHhcCCccccEEEE--EEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCC
Confidence 579999999999999 6788999999999 999999999999999999999999999999999986
No 330
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.26 E-value=4.3e-12 Score=127.18 Aligned_cols=59 Identities=22% Similarity=0.335 Sum_probs=48.1
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK 237 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~ 237 (320)
.++++++++.|.. ...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+.
T Consensus 6 ~l~i~~l~~~y~~---~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~-G~~~p~~G~i~~~ 67 (556)
T PRK11819 6 IYTMNRVSKVVPP---KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMA-GVDKEFEGEARPA 67 (556)
T ss_pred EEEEeeEEEEeCC---CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEec
Confidence 5666666544421 35577777776 9999999999999999999999 9999999999875
No 331
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.26 E-value=5.4e-12 Score=114.37 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=48.3
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR 240 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~ 240 (320)
.++++++.+.|... ...++++++|. |++++|+|+||||||||+++|+ |+++|.+|++.+++.+
T Consensus 19 ~i~~~~l~~~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~i~g~~ 84 (257)
T cd03288 19 EIKIHDLCVRYENN--LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFF-RMVDIFDGKIVIDGID 84 (257)
T ss_pred eEEEEEEEEEeCCC--CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHH-cccCCCCCeEEECCEE
Confidence 45666665544321 12356666665 9999999999999999999999 9999999999987543
No 332
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.26 E-value=2.9e-12 Score=141.76 Aligned_cols=132 Identities=15% Similarity=-0.002 Sum_probs=83.0
Q ss_pred eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcC
Q psy15138 174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESG 248 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g 248 (320)
..++++++.+.|... ...+++++++. |++++|+||||||||||+|+|+ |+++|++|+|.+++.+... .....
T Consensus 1936 ~~L~v~nLsK~Y~~~--~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~-Gll~ptsG~I~i~G~~i~~~~~~~r~ 2012 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT--SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLT-GDTTVTSGDATVAGKSILTNISDVHQ 2012 (2272)
T ss_pred ceEEEEEEEEEECCC--CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHh-CCCCCCccEEEECCEECcchHHHHhh
Confidence 356666665544210 14567777775 9999999999999999999999 9999999999998654211 11122
Q ss_pred cceeeeccccC--Cccccceeec-CCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 249 RTSSVGNDILG--FDSVGNVVNK-PEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 249 ~v~~~~~~~~~--~~~~~~~v~~-~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
.++..+|.... ..++.+.+.. .........+.+ +.+.++++.+|+.++.++.+.+|||++
T Consensus 2013 ~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~---~~v~~lLe~lgL~~~~dk~~~~LSGGq 2075 (2272)
T TIGR01257 2013 NMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIE---KVANWSIQSLGLSLYADRLAGTYSGGN 2075 (2272)
T ss_pred hEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHH---HHHHHHHHHcCCHHHhcCChhhCCHHH
Confidence 34444444222 2344444432 111222222222 234455666777888999999999964
No 333
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.26 E-value=6.9e-12 Score=122.62 Aligned_cols=108 Identities=17% Similarity=0.127 Sum_probs=68.3
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCCccccceeec
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNK 269 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~v~~ 269 (320)
.++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++... .+.+.+ .+....+..+++..
T Consensus 38 ~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLa-GLl~P~sGeI~I~G~~~-------~i~~~~-~l~~~lTV~EnL~l 108 (549)
T PRK13545 38 YALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIA-GVTMPNKGTVDIKGSAA-------LIAISS-GLNGQLTGIENIEL 108 (549)
T ss_pred eEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHh-CCCCCCceEEEECCEee-------eEEecc-ccCCCCcHHHHHHh
Confidence 467777775 9999999999999999999999 99999999999865321 111111 11111233333322
Q ss_pred CC-CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 270 PE-HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 270 ~~-~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.. ......... .+++.++++.+++.++.++.+..|||++.
T Consensus 109 ~~~~~~~~~~e~---~e~i~elLe~lgL~~~ld~~~~~LSGGQr 149 (549)
T PRK13545 109 KGLMMGLTKEKI---KEIIPEIIEFADIGKFIYQPVKTYSSGMK 149 (549)
T ss_pred hhhhcCCCHHHH---HHHHHHHHHHcCChhHhhCCcccCCHHHH
Confidence 11 111222222 22334555666778888999999999654
No 334
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.26 E-value=2e-12 Score=120.43 Aligned_cols=141 Identities=18% Similarity=0.197 Sum_probs=93.9
Q ss_pred eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccc----
Q psy15138 174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRH---- 241 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~---- 241 (320)
.++++++.+-.+...-+...++++++|. ||.+||||.||||||-..+.|. ++++. .+|+|.+++.+.
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim-~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSIL-GLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHH-HhcCCCcccCccceeEEcChhhhcCC
Confidence 4566666655554444577889999887 9999999999999999999999 99874 368998886541
Q ss_pred ---hhhhhcCcceeeeccccC-Cccc---cceeecCC--CCCCCHHhHHHHHHHHHHHhcccCC---ccccccccccccC
Q psy15138 242 ---KHEMESGRTSSVGNDILG-FDSV---GNVVNKPE--HGSLDWVKICERSAKVITFIDLAGH---ERYLKTTVFGMTG 309 (320)
Q Consensus 242 ---~~~~~~g~v~~~~~~~~~-~~~~---~~~v~~~~--~~~~~~~~~~~~~~~~l~~l~l~gl---~~~~~~~~~~LSG 309 (320)
....+-..++.+||+++. +++. +..+.... ...+..... ..+++++++.+|+ +..++.+|++|||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~A---r~r~lelL~~VgI~~p~~rl~~yPHeLSG 160 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAA---RARALELLELVGIPEPEKRLDAYPHELSG 160 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHH---HHHHHHHHHHcCCCchhhhhhhCCcccCc
Confidence 122333467777777654 2222 22222211 123333333 3455566666665 5689999999999
Q ss_pred CCCCEEEEE
Q psy15138 310 HVPDFGMLM 318 (320)
Q Consensus 310 ~~~~~~~l~ 318 (320)
++...+|++
T Consensus 161 GqRQRVMIA 169 (534)
T COG4172 161 GQRQRVMIA 169 (534)
T ss_pred chhhHHHHH
Confidence 988776653
No 335
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=3.2e-12 Score=127.42 Aligned_cols=49 Identities=22% Similarity=0.369 Sum_probs=42.7
Q ss_pred ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138 189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL 238 (320)
Q Consensus 189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~ 238 (320)
|+...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++
T Consensus 11 ~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~-Gl~~p~~G~i~~~~ 62 (530)
T PRK15064 11 FGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILG-GDLEPSAGNVSLDP 62 (530)
T ss_pred eCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEecC
Confidence 3345577777776 9999999999999999999999 99999999998864
No 336
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=6.2e-12 Score=114.45 Aligned_cols=134 Identities=17% Similarity=0.060 Sum_probs=76.4
Q ss_pred eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch---
Q psy15138 174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK--- 242 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~--- 242 (320)
..++++++.+.|. ...++++++|. |++++|+||||||||||+++|+ |+++| ++|+|.+++....
T Consensus 15 ~~l~~~~l~~~~~----~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 15 QKSEVNKLNFYYG----GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFN-RMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred ceEEEEEEEEEEC----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh-cccCCCCCCCcccEEEEcCccccccc
Confidence 4566776655543 33567776665 9999999999999999999999 99875 6899988643210
Q ss_pred ----hhhhcCcceeeeccccCCc-cccceeecCCC-CCCC-HHhHHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138 243 ----HEMESGRTSSVGNDILGFD-SVGNVVNKPEH-GSLD-WVKICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 ----~~~~~g~v~~~~~~~~~~~-~~~~~v~~~~~-~~~~-~~~~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~ 312 (320)
.......++..+|+...|. +..+++..... .... +....+....+++.+++. ++.+..++.+..|||++.
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 167 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQ 167 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHH
Confidence 0111223444444432221 33344332211 1111 111122333444444332 224566788899999643
No 337
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.25 E-value=5.1e-12 Score=127.14 Aligned_cols=93 Identities=20% Similarity=0.165 Sum_probs=64.0
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~ 249 (320)
++++++++.|.... ...++++.++. |++++|+||||||||||+++|+ |+++|.+|+|.+++.+. ........
T Consensus 338 i~~~~v~f~y~~~~-~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~-gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 338 IEFEQVNFAYPARP-DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLL-RFYDPQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred EEEEEEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHH-hccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence 55666655553211 13467777765 9999999999999999999999 99999999999986441 11122234
Q ss_pred ceeeeccccCC-ccccceeecC
Q psy15138 250 TSSVGNDILGF-DSVGNVVNKP 270 (320)
Q Consensus 250 v~~~~~~~~~~-~~~~~~v~~~ 270 (320)
++.++|+...| .+..+++..+
T Consensus 416 i~~~~Q~~~lf~~Ti~~Ni~~~ 437 (576)
T TIGR02204 416 MALVPQDPVLFAASVMENIRYG 437 (576)
T ss_pred ceEEccCCccccccHHHHHhcC
Confidence 56666666555 4566776654
No 338
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.25 E-value=5.2e-12 Score=115.57 Aligned_cols=124 Identities=15% Similarity=0.158 Sum_probs=77.1
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~ 249 (320)
++++++++.|.. +...++++++|. |++++|+||||||||||+++|+ |+++ .+|+|.+++.+.. .......
T Consensus 3 i~~~nls~~~~~--~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~-gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 3 MTVKDLTAKYTE--GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred EEEEEEEEEeCC--CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHh-hhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 345555444421 123466777765 9999999999999999999999 9998 7899999864421 1112234
Q ss_pred ceeeeccccCCc-cccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCcccccccccc-----------ccCCCC
Q psy15138 250 TSSVGNDILGFD-SVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFG-----------MTGHVP 312 (320)
Q Consensus 250 v~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~-----------LSG~~~ 312 (320)
++.++|+...|. ++.+++... .... .+++.+.++.+|+.++.+++|.+ |||++.
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~--~~~~-------~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~ 144 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPY--GKWS-------DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHK 144 (275)
T ss_pred EEEECCCcccchhhHHHHhhhc--cCCC-------HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHH
Confidence 555555544442 333333211 1111 12344555567778888888887 888653
No 339
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.25 E-value=5e-12 Score=127.09 Aligned_cols=92 Identities=21% Similarity=0.269 Sum_probs=65.6
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~ 249 (320)
++++++++.|... ...+++++++. |++++|+|+||||||||+++|+ |+++|.+|+|.+++.+. ........
T Consensus 331 i~~~~v~f~y~~~--~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~-gl~~~~~G~I~i~g~~i~~~~~~~~~~~ 407 (571)
T TIGR02203 331 VEFRNVTFRYPGR--DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIP-RFYEPDSGQILLDGHDLADYTLASLRRQ 407 (571)
T ss_pred EEEEEEEEEcCCC--CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHH-hccCCCCCeEEECCEeHHhcCHHHHHhh
Confidence 5555555555321 13467777775 9999999999999999999999 99999999999986541 12223455
Q ss_pred ceeeeccccCC-ccccceeecC
Q psy15138 250 TSSVGNDILGF-DSVGNVVNKP 270 (320)
Q Consensus 250 v~~~~~~~~~~-~~~~~~v~~~ 270 (320)
++.++|+...| .+..+++..+
T Consensus 408 i~~v~Q~~~lf~~Ti~~Ni~~~ 429 (571)
T TIGR02203 408 VALVSQDVVLFNDTIANNIAYG 429 (571)
T ss_pred ceEEccCcccccccHHHHHhcC
Confidence 67777776665 4556666554
No 340
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.25 E-value=3.3e-12 Score=108.41 Aligned_cols=133 Identities=17% Similarity=0.169 Sum_probs=90.9
Q ss_pred CeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc-c----chhh---hhcCccee
Q psy15138 184 GLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF-R----HKHE---MESGRTSS 252 (320)
Q Consensus 184 ~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~-~----~~~~---~~~g~v~~ 252 (320)
+++.+++.++++++.+|. |+.-+|+|||||||||++-+|+ |..+|+.|++.+.+. + ..++ .-+|+-+|
T Consensus 10 ~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~It-GKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ 88 (249)
T COG4674 10 GVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVIT-GKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQ 88 (249)
T ss_pred ceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeec-ccCCCCcceEEEcCchhhccCCHHHHHHhccCcccc
Confidence 556778888899988886 9999999999999999999999 999999999998752 2 1222 23566666
Q ss_pred eeccccCCccccceeecCCCCCCC-HHh-----HHHHHHHHHHHhcccCCccccccccccccCCC---CCEEEEE
Q psy15138 253 VGNDILGFDSVGNVVNKPEHGSLD-WVK-----ICERSAKVITFIDLAGHERYLKTTVFGMTGHV---PDFGMLM 318 (320)
Q Consensus 253 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~-----~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~---~~~~~l~ 318 (320)
.+.-+..+ ++.+++........+ |.. ..+...++.+.+...|+.+..+.....||=++ ...+||+
T Consensus 89 ~PtVfe~l-tV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll 162 (249)
T COG4674 89 KPTVFENL-TVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLL 162 (249)
T ss_pred CCeehhhc-cHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheee
Confidence 65543333 445555444332221 111 12234566777778888888888888888643 4445554
No 341
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=7.9e-12 Score=116.12 Aligned_cols=61 Identities=21% Similarity=0.120 Sum_probs=48.0
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeecccc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFR 240 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~ 240 (320)
.+.+.++.+.| +...++++++|. |++++|+||||||||||+++|+ |+++ |.+|+|.+++.+
T Consensus 45 ~l~i~nl~~~~----~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~-Gl~~~~~~~p~~G~I~i~g~~ 113 (305)
T PRK14264 45 KLSVEDLDVYY----GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLN-RMNDRIKAARIDGSVELDGQD 113 (305)
T ss_pred eEEEEEEEEEe----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-ccccccCCCCCceEEEECCEE
Confidence 45666655444 334567777775 9999999999999999999999 9986 689999987543
No 342
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=9.1e-12 Score=113.83 Aligned_cols=130 Identities=20% Similarity=0.077 Sum_probs=76.1
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----CCceeeeccccch----
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN-----GRGHARQKLFRHK---- 242 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~-----~~G~i~~~~~~~~---- 242 (320)
.++++++++.|. ...++++++|. |++++|+||||||||||+++|+ |+++| .+|++.+++.+..
T Consensus 25 ~l~~~nl~~~~~----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~la-Gl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 25 ALEVRNLNLFYG----DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFN-RMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred EEEEEEEEEEEC----CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHH-hcCCCccCCCCceEEEECCEECccccc
Confidence 466666655442 23466666665 9999999999999999999999 99874 7999998754321
Q ss_pred -hhhhcCcceeeeccccCCc-cccceeecCCC-CCC-CHHhHHHHHHHHHHHhcccCCc----cccccccccccCCCC
Q psy15138 243 -HEMESGRTSSVGNDILGFD-SVGNVVNKPEH-GSL-DWVKICERSAKVITFIDLAGHE----RYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 -~~~~~g~v~~~~~~~~~~~-~~~~~v~~~~~-~~~-~~~~~~~~~~~~l~~l~l~gl~----~~~~~~~~~LSG~~~ 312 (320)
.......++.++|+...|. +..+++..... ... ......+. +.+.++.+++. +..++.+..|||++.
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~---~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 174 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEA---VERSLRGAALWDEVKDRLHENAFGLSGGQQ 174 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHH---HHHHHHHcCCChhHHHHhhCCcccCCHHHH
Confidence 1111234455555433222 44444432211 111 11111222 33344444443 456788999999653
No 343
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.24 E-value=3.7e-12 Score=114.75 Aligned_cols=98 Identities=14% Similarity=0.111 Sum_probs=62.1
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCCccccceeecCCCCCCCHHhH
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKI 280 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 280 (320)
.|++++|+||||||||||+++|+ |+++|++|++.+++. .+++++|....... .++.+++...... .. ..
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~-G~~~p~~G~i~~~g~------~i~~~~q~~~~~~~-~tv~e~l~~~~~~-~~--~~ 92 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLA-GVLKPDEGDIEIELD------TVSYKPQYIKADYE-GTVRDLLSSITKD-FY--TH 92 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh-CCCcCCCCeEEECCc------eEEEecccccCCCC-CCHHHHHHHHhhh-cc--cc
Confidence 39999999999999999999999 999999999987642 23444443221111 2333333221110 00 00
Q ss_pred HHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 281 CERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 281 ~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
. ....++++.+++.+..++.+..|||++.
T Consensus 93 ~---~~~~~~l~~l~l~~~~~~~~~~LSgGe~ 121 (246)
T cd03237 93 P---YFKTEIAKPLQIEQILDREVPELSGGEL 121 (246)
T ss_pred H---HHHHHHHHHcCCHHHhhCChhhCCHHHH
Confidence 1 1123455566777888999999999653
No 344
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.24 E-value=3.7e-12 Score=140.96 Aligned_cols=132 Identities=15% Similarity=0.117 Sum_probs=84.3
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhcCc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMESGR 249 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~g~ 249 (320)
.++++++.+.|.. +.+.+++++++. |++++|+||||||||||+++|+ |+++|++|++.+++.+... ...+..
T Consensus 928 ~L~I~nLsK~y~~--~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLa-GLl~PtsG~I~i~G~dI~~~~~~~r~~ 1004 (2272)
T TIGR01257 928 GVCVKNLVKIFEP--SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILT-GLLPPTSGTVLVGGKDIETNLDAVRQS 1004 (2272)
T ss_pred eEEEEeEEEEecC--CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHh-cCCCCCceEEEECCEECcchHHHHhhc
Confidence 4556655544421 124567777765 9999999999999999999999 9999999999988654211 111233
Q ss_pred ceeeeccccCC--ccccceeecCC-CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 250 TSSVGNDILGF--DSVGNVVNKPE-HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 250 v~~~~~~~~~~--~~~~~~v~~~~-~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
++.++|+...+ .++.+++.... .......+. .+++.++++.+|+.++.++.+.+|||++.
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~---~~~v~~lL~~vgL~~~~~~~~~~LSGGqK 1067 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEA---QLEMEAMLEDTGLHHKRNEEAQDLSGGMQ 1067 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence 45555553333 34455544321 122222222 23455566667778889999999999653
No 345
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.24 E-value=6.7e-12 Score=113.64 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=35.9
Q ss_pred ccccCCc--cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceee
Q psy15138 194 RVESQDF--LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHAR 235 (320)
Q Consensus 194 ~l~~~~~--~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~ 235 (320)
+++++++ +|++++|+||||||||||+++|+ |+++|++|+|+
T Consensus 16 ~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~-Gl~~p~~G~I~ 58 (255)
T cd03236 16 KLHRLPVPREGQVLGLVGPNGIGKSTALKILA-GKLKPNLGKFD 58 (255)
T ss_pred hhhcCCCCCCCCEEEEECCCCCCHHHHHHHHh-CCcCCCCceEe
Confidence 4444443 49999999999999999999999 99999999996
No 346
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.24 E-value=8.1e-12 Score=123.20 Aligned_cols=52 Identities=37% Similarity=0.502 Sum_probs=45.6
Q ss_pred eeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138 185 LTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK 237 (320)
Q Consensus 185 ~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~ 237 (320)
++..|+.+..++++++. |+|+||||+||+|||||||+|+ |.+.|++|+|...
T Consensus 9 ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkila-G~~~~~~G~i~~~ 63 (530)
T COG0488 9 LSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILA-GELEPDSGEVTRP 63 (530)
T ss_pred eEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHc-CCCcCCCCeEeec
Confidence 44555677788888876 9999999999999999999999 9999999999874
No 347
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.24 E-value=5.6e-12 Score=127.20 Aligned_cols=91 Identities=23% Similarity=0.202 Sum_probs=64.7
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~ 249 (320)
++++++++.|.. ...+++++++. |++++|+|+||||||||+++|+ |+++|.+|.|.+++.+. .....+..
T Consensus 335 I~~~~vsf~y~~---~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~-gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 410 (588)
T PRK13657 335 VEFDDVSFSYDN---SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQ-RVFDPQSGRILIDGTDIRTVTRASLRRN 410 (588)
T ss_pred EEEEEEEEEeCC---CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHh-cCcCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 555555555532 13467777775 9999999999999999999999 99999999999986441 12223345
Q ss_pred ceeeeccccCC-ccccceeecC
Q psy15138 250 TSSVGNDILGF-DSVGNVVNKP 270 (320)
Q Consensus 250 v~~~~~~~~~~-~~~~~~v~~~ 270 (320)
++.++|+...| .+..+++..+
T Consensus 411 i~~v~Q~~~lf~~Ti~~Ni~~~ 432 (588)
T PRK13657 411 IAVVFQDAGLFNRSIEDNIRVG 432 (588)
T ss_pred eEEEecCcccccccHHHHHhcC
Confidence 66667766555 4566666554
No 348
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.23 E-value=8e-12 Score=126.95 Aligned_cols=84 Identities=24% Similarity=0.286 Sum_probs=72.8
Q ss_pred CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCC-CcEEEEeCCCCC--ChhHHHH
Q psy15138 12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSV-PVFVVVTKIDMC--PPNVLQD 86 (320)
Q Consensus 12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~--~~~~le~ 86 (320)
.+..+.|+|+|||++|. |+.++..+|.+++ ||++++|+++||++|+.++..+++ +.+|++||+|++ +.+++++
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~ll--Vvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~ 179 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAII--LVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDE 179 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEE--EEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHH
Confidence 45578999999999999 9999999999999 999999999999999999999999 567889999997 3566777
Q ss_pred HHHHHHHhhcC
Q psy15138 87 TLKLLVRILKS 97 (320)
Q Consensus 87 ~l~~~~~~l~~ 97 (320)
...++..+++.
T Consensus 180 i~~~i~~~~~~ 190 (632)
T PRK05506 180 IVADYRAFAAK 190 (632)
T ss_pred HHHHHHHHHHH
Confidence 77777765543
No 349
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.4e-11 Score=107.20 Aligned_cols=48 Identities=19% Similarity=0.168 Sum_probs=42.4
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcC--CCCCceeeecccc
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGEL--DNGRGHARQKLFR 240 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l--~~~~G~i~~~~~~ 240 (320)
+++++.+++. |+..+|+||||||||||.++|+ |.- .+++|+|.+++.+
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~-G~p~Y~Vt~G~I~~~Ged 69 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIM-GHPKYEVTEGEILFDGED 69 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHh-CCCCceEecceEEECCcc
Confidence 4778887776 9999999999999999999999 985 6789999998765
No 350
>PRK00098 GTPase RsgA; Reviewed
Probab=99.23 E-value=2.3e-10 Score=105.91 Aligned_cols=45 Identities=27% Similarity=0.315 Sum_probs=36.1
Q ss_pred CCccchhhhccceecCCCCc--hhHHHHHHHHHHcCCCcEEEEeCCCCC
Q psy15138 33 ASPADHSMLQSKVGANAGIV--GMTKEHLGLALALSVPVFVVVTKIDMC 79 (320)
Q Consensus 33 ~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~l~i~~~v~lnk~Dl~ 79 (320)
+.++|.+++ |++++++.. ....+.+..++..++|+++|+||+|+.
T Consensus 78 aaniD~vll--V~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~ 124 (298)
T PRK00098 78 AANVDQAVL--VFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLL 124 (298)
T ss_pred eecCCEEEE--EEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcC
Confidence 489999988 999976543 233457777888899999999999996
No 351
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.22 E-value=9.2e-12 Score=109.99 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=40.6
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF 239 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~ 239 (320)
.++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~-G~~~~~~G~i~~~g~ 63 (218)
T cd03290 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAIL-GEMQTLEGKVHWSNK 63 (218)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-ccCCCCCCeEEECCc
Confidence 456666665 9999999999999999999999 999999999998754
No 352
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.22 E-value=4e-12 Score=119.08 Aligned_cols=102 Identities=17% Similarity=0.134 Sum_probs=65.2
Q ss_pred EEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcceeeeccccCC--ccccceeecCCC-CCCCHHhHHH
Q psy15138 207 VVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICE 282 (320)
Q Consensus 207 ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~ 282 (320)
|+||||||||||+++|+ |+++|++|+|.+++.+... ......++.++|+...| .++.+++.++.. .......
T Consensus 1 l~G~nGsGKSTLl~~ia-Gl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~--- 76 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLA-GFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAE--- 76 (325)
T ss_pred CcCCCCCCHHHHHHHHH-CCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHH---
Confidence 58999999999999999 9999999999987643211 11122344455543333 245555544321 1122222
Q ss_pred HHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 283 RSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 283 ~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
...++.++++.+++.++.++.+.+|||++.
T Consensus 77 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~ 106 (325)
T TIGR01187 77 IKPRVLEALRLVQLEEFADRKPHQLSGGQQ 106 (325)
T ss_pred HHHHHHHHHHHcCCcchhcCChhhCCHHHH
Confidence 223445566677778889999999999653
No 353
>PRK12289 GTPase RsgA; Reviewed
Probab=99.22 E-value=5.6e-11 Score=112.01 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=42.4
Q ss_pred CCCccchhhhccceecCCCC-ch-hHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHH
Q psy15138 32 EASPADHSMLQSKVGANAGI-VG-MTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDT 87 (320)
Q Consensus 32 ~~~~~d~~~l~~vv~a~~g~-~~-~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~ 87 (320)
.+.++|.+++ |++++++. .+ ...+.|..+...++|+++|+||+||++.+.++.+
T Consensus 86 ~~aNvD~vLl--V~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~ 141 (352)
T PRK12289 86 PVANADQILL--VFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQW 141 (352)
T ss_pred hhhcCCEEEE--EEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHH
Confidence 3889999988 99998654 33 4466888888889999999999999876554443
No 354
>KOG0055|consensus
Probab=99.21 E-value=6.7e-12 Score=131.06 Aligned_cols=97 Identities=16% Similarity=0.122 Sum_probs=72.1
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g 248 (320)
.++++++.+.|+.+. ..++++++++. |+.++|||||||||||++++|. ++++|.+|+|.+++.+.. ....+.
T Consensus 350 ~ief~nV~FsYPsRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~-RfydP~~G~V~idG~di~~~~~~~lr~ 427 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLA-RFYDPTSGEVLIDGEDIRNLNLKWLRS 427 (1228)
T ss_pred ceEEEEEEecCCCCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHH-HhcCCCCceEEEcCccchhcchHHHHh
Confidence 467787777776543 34566666665 9999999999999999999999 999999999999866521 122344
Q ss_pred cceeeeccccCC-ccccceeecCCCC
Q psy15138 249 RTSSVGNDILGF-DSVGNVVNKPEHG 273 (320)
Q Consensus 249 ~v~~~~~~~~~~-~~~~~~v~~~~~~ 273 (320)
.++.++|++..| .+..+++.++...
T Consensus 428 ~iglV~QePvlF~~tI~eNI~~G~~d 453 (1228)
T KOG0055|consen 428 QIGLVSQEPVLFATTIRENIRYGKPD 453 (1228)
T ss_pred hcCeeeechhhhcccHHHHHhcCCCc
Confidence 566666666655 5678888876644
No 355
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=1.4e-11 Score=115.49 Aligned_cols=135 Identities=16% Similarity=0.058 Sum_probs=81.3
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeeccccch----
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFRHK---- 242 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~~~---- 242 (320)
.++++++++.|.. ....++++++|. |++++|+||||||||||+++|+ |+.+ |.+|+|.+++.+..
T Consensus 80 ~i~~~nls~~y~~--~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~-g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 80 VFEIRNFNFWYMN--RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLN-QLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred eEEEEeeEEEecC--CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-ccccccCCCCCceEEEECCEEcccccc
Confidence 5677776665532 123467777765 9999999999999999999999 9986 57999998765421
Q ss_pred -hhhhcCcceeeeccccCC-ccccceeecCC-CCCCCHHh-HHHHHHHHHHHhccc-CCccccccccccccCCCC
Q psy15138 243 -HEMESGRTSSVGNDILGF-DSVGNVVNKPE-HGSLDWVK-ICERSAKVITFIDLA-GHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 -~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~-~~~~~~~~-~~~~~~~~l~~l~l~-gl~~~~~~~~~~LSG~~~ 312 (320)
.....+.++.++|....| .+..+++.++. .......+ ..+....+++.+++. ++....+..+..|||++.
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqk 231 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQ 231 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHH
Confidence 112234566666665444 34445554322 11111111 111233344443331 234567788999999654
No 356
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.21 E-value=1.2e-11 Score=125.34 Aligned_cols=119 Identities=18% Similarity=0.161 Sum_probs=76.4
Q ss_pred ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCC---CceeeeccccchhhhhcCcceeeeccccCC--cc
Q psy15138 191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNG---RGHARQKLFRHKHEMESGRTSSVGNDILGF--DS 262 (320)
Q Consensus 191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~---~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~--~~ 262 (320)
.+.+++++++. |+.++|+|||||||||||++|+ |..+++ +|+|.+++...........++.++|+...+ .+
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~-g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHh-CCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 34567777775 9999999999999999999999 998885 799998865432212222334444443332 35
Q ss_pred ccceeecCCCC----CCCHHhHHHHHHHHHHHhcccCCccccccccc------cccCCCCC
Q psy15138 263 VGNVVNKPEHG----SLDWVKICERSAKVITFIDLAGHERYLKTTVF------GMTGHVPD 313 (320)
Q Consensus 263 ~~~~v~~~~~~----~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~------~LSG~~~~ 313 (320)
+.+++.+.... ..... ++..++.+.++..|+.+..++.+. +|||++.-
T Consensus 116 V~e~l~f~~~~~~~~~~~~~---~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrk 173 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKK---EKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERK 173 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhh
Confidence 66666543221 12222 233445556666677777777765 69997753
No 357
>KOG0055|consensus
Probab=99.21 E-value=1.6e-11 Score=128.32 Aligned_cols=134 Identities=16% Similarity=0.158 Sum_probs=89.0
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g 248 (320)
.++++++.|.|+ ..+..+++++.+++ |+.+||||||||||||.+.+|- ++++|.+|.|.+++.+. .....+.
T Consensus 987 ~I~~~~V~F~YP-sRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLe-RfYdp~~G~V~IDg~dik~lnl~~LR~ 1064 (1228)
T KOG0055|consen 987 DIEFRNVSFAYP-TRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLE-RFYDPDAGKVKIDGVDIKDLNLKWLRK 1064 (1228)
T ss_pred EEEEeeeEeeCC-CCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHH-HhcCCCCCeEEECCcccccCCHHHHHH
Confidence 467788888886 33456667777765 9999999999999999999999 99999999999986552 1122345
Q ss_pred cceeeeccccCC-ccccceeecCCCCCCCHHhHHHH--HHHHHHHhc-c-cCCccccccccccccCCC
Q psy15138 249 RTSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICER--SAKVITFID-L-AGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 249 ~v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~--~~~~l~~l~-l-~gl~~~~~~~~~~LSG~~ 311 (320)
.++.+.|++..| .+..+|+.++... .+..++.+. ..-+.+++. + -|++-.....-.+|||++
T Consensus 1065 ~i~lVsQEP~LF~~TIrENI~YG~~~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQ 1131 (1228)
T KOG0055|consen 1065 QIGLVSQEPVLFNGTIRENIAYGSEE-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQ 1131 (1228)
T ss_pred hcceeccCchhhcccHHHHHhccCCC-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchH
Confidence 566777777776 4678888887333 444443322 122223322 2 133333444446889875
No 358
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=1.3e-11 Score=111.20 Aligned_cols=132 Identities=17% Similarity=0.093 Sum_probs=73.8
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC-----CCCceeeeccccch-----
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD-----NGRGHARQKLFRHK----- 242 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~-----~~~G~i~~~~~~~~----- 242 (320)
++++++...| +...++++++|. |++++|+||||||||||+++|+ |+++ |++|+|.+++.+..
T Consensus 4 l~~~~v~~~~----~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 78 (250)
T PRK14266 4 IEVENLNTYF----DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLN-RMNDLIPGFRHEGHIYLDGVDIYDPAVD 78 (250)
T ss_pred EEEEeEEEEe----CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHH-hhhccCCCCCCccEEEECCEEccccccc
Confidence 4455554433 234466666665 9999999999999999999999 9864 38999998764421
Q ss_pred hhhhcCcceeeeccccCC-ccccceeecCCC-CC-CCHHhHHHHHHHHHHHhcccC-CccccccccccccCCCC
Q psy15138 243 HEMESGRTSSVGNDILGF-DSVGNVVNKPEH-GS-LDWVKICERSAKVITFIDLAG-HERYLKTTVFGMTGHVP 312 (320)
Q Consensus 243 ~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~-~~-~~~~~~~~~~~~~l~~l~l~g-l~~~~~~~~~~LSG~~~ 312 (320)
.......++.++|+...| .+..+++..... .. .......+...++++.+++.. +.+..++.+..|||++.
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 79 VVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQ 152 (250)
T ss_pred HHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHH
Confidence 111123445555553322 234444433211 11 111122223333333333311 13446788899999653
No 359
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.20 E-value=1.2e-11 Score=127.13 Aligned_cols=92 Identities=13% Similarity=0.081 Sum_probs=63.6
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~ 249 (320)
++++++++.|... ...+++++++. |++++|+|+||||||||+++|+ |+++|++|+|.+++.+. .....+..
T Consensus 456 i~~~~vsf~y~~~--~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~-g~~~p~~G~I~idg~~i~~~~~~~~r~~ 532 (694)
T TIGR01846 456 ITFENIRFRYAPD--SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQ-RLYTPQHGQVLVDGVDLAIADPAWLRRQ 532 (694)
T ss_pred EEEEEEEEEcCCC--CccccccceEEECCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCceEEECCEehhhCCHHHHHHh
Confidence 4555555555321 23467777775 9999999999999999999999 99999999999986542 11222344
Q ss_pred ceeeeccccCC-ccccceeecC
Q psy15138 250 TSSVGNDILGF-DSVGNVVNKP 270 (320)
Q Consensus 250 v~~~~~~~~~~-~~~~~~v~~~ 270 (320)
++.++|+...| .+..+++..+
T Consensus 533 i~~v~q~~~lf~~ti~eNi~~~ 554 (694)
T TIGR01846 533 MGVVLQENVLFSRSIRDNIALC 554 (694)
T ss_pred CeEEccCCeehhhhHHHHHhcC
Confidence 55666665544 4556666553
No 360
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.20 E-value=1.4e-11 Score=123.21 Aligned_cols=82 Identities=22% Similarity=0.100 Sum_probs=59.3
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g 248 (320)
.++++++++.|.. ...+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. ....+.
T Consensus 322 ~i~~~~v~f~y~~---~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~-g~~~~~~G~i~~~g~~~~~~~~~~~~~ 397 (547)
T PRK10522 322 TLELRNVTFAYQD---NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLT-GLYQPQSGEILLDGKPVTAEQPEDYRK 397 (547)
T ss_pred eEEEEEEEEEeCC---CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCeEEEECCEECCCCCHHHHhh
Confidence 3556666655532 13467777775 9999999999999999999999 999999999999865421 122234
Q ss_pred cceeeeccccCC
Q psy15138 249 RTSSVGNDILGF 260 (320)
Q Consensus 249 ~v~~~~~~~~~~ 260 (320)
.++.++|+...|
T Consensus 398 ~i~~v~q~~~lf 409 (547)
T PRK10522 398 LFSAVFTDFHLF 409 (547)
T ss_pred heEEEecChhHH
Confidence 566677766554
No 361
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.20 E-value=3e-11 Score=115.46 Aligned_cols=76 Identities=16% Similarity=0.153 Sum_probs=57.4
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc------hhhhhcCcceeeeccccCCcc
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH------KHEMESGRTSSVGNDILGFDS 262 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~------~~~~~~g~v~~~~~~~~~~~~ 262 (320)
+..+++++|. |+.++||||||||||||.|+|. |..+|.+|.+++++.+. .....+||.+|..+.+. .+
T Consensus 349 ~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lv-G~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~--GT 425 (580)
T COG4618 349 KPILKGISFALQAGEALGIIGPSGSGKSTLARLLV-GIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD--GT 425 (580)
T ss_pred CcceecceeEecCCceEEEECCCCccHHHHHHHHH-cccccCCCcEEecchhhhcCCHHHhccccCcCcccceecC--Cc
Confidence 4678888886 9999999999999999999999 99999999999986541 12234666666655433 35
Q ss_pred ccceeecC
Q psy15138 263 VGNVVNKP 270 (320)
Q Consensus 263 ~~~~v~~~ 270 (320)
+.+|+...
T Consensus 426 IaeNIaRf 433 (580)
T COG4618 426 IAENIARF 433 (580)
T ss_pred HHHHHHhc
Confidence 55665543
No 362
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.19 E-value=5.5e-11 Score=107.01 Aligned_cols=74 Identities=20% Similarity=0.159 Sum_probs=52.1
Q ss_pred cccccccCCCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc--hhHHHHHHHHHHcCCCcEEEEeCCCC
Q psy15138 3 SIVDQTPCTAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV--GMTKEHLGLALALSVPVFVVVTKIDM 78 (320)
Q Consensus 3 ~~~~~~~~~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~l~i~~~v~lnk~Dl 78 (320)
-||.+.+.+ + .-++| +--+|||- .=+-+.++|.+++ |.+++++.. ....+.+..+...++|+++|+||+||
T Consensus 5 D~V~~~~~~-~-~~~~i-~~i~eR~~~L~r~~~~n~D~vii--V~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL 79 (245)
T TIGR00157 5 DRVVWEPGN-V-VKVYG-GAIAERKNELTRPIVANIDQIVI--VSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDL 79 (245)
T ss_pred cEEEEEecC-C-CceEE-EEEecccceEECcccccCCEEEE--EEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECccc
Confidence 477776542 2 22344 24568887 2234889999999 999987553 34456777888888999999999999
Q ss_pred CCh
Q psy15138 79 CPP 81 (320)
Q Consensus 79 ~~~ 81 (320)
.+.
T Consensus 80 ~~~ 82 (245)
T TIGR00157 80 LDD 82 (245)
T ss_pred CCC
Confidence 754
No 363
>KOG1145|consensus
Probab=99.19 E-value=5e-11 Score=114.46 Aligned_cols=65 Identities=26% Similarity=0.305 Sum_probs=61.3
Q ss_pred CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC
Q psy15138 13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC 79 (320)
Q Consensus 13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~ 79 (320)
-..++|+|+|||..|- +--|+...|.++| ||+|++|+||||.|-+..|+.-++|++|++||+|..
T Consensus 200 G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL--VVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp 266 (683)
T KOG1145|consen 200 GKSITFLDTPGHAAFSAMRARGANVTDIVVL--VVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKP 266 (683)
T ss_pred CCEEEEecCCcHHHHHHHHhccCccccEEEE--EEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCC
Confidence 3569999999999999 6889999999999 999999999999999999999999999999999975
No 364
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.19 E-value=1.1e-11 Score=135.24 Aligned_cols=117 Identities=21% Similarity=0.124 Sum_probs=75.6
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCC---CCCceeeeccccchhhhhcCcceeeecccc--CCccc
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELD---NGRGHARQKLFRHKHEMESGRTSSVGNDIL--GFDSV 263 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~---~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~--~~~~~ 263 (320)
+.+++++++. |+.++|+|||||||||||++|+ |..+ |++|+|.+++.+.... ....++.++|+.. ...++
T Consensus 776 ~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~La-g~~~~g~~~~G~I~i~G~~~~~~-~~~~i~yv~Q~~~~~~~~Tv 853 (1394)
T TIGR00956 776 RVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLA-ERVTTGVITGGDRLVNGRPLDSS-FQRSIGYVQQQDLHLPTSTV 853 (1394)
T ss_pred cEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh-CCCCCCCcceeEEEECCEECChh-hhcceeeecccccCCCCCCH
Confidence 4577887775 9999999999999999999999 9987 6789999986543211 1223444444422 22355
Q ss_pred cceeecCCCC----CCCHHhHHHHHHHHHHHhcccCCccccccccc----cccCCCCC
Q psy15138 264 GNVVNKPEHG----SLDWVKICERSAKVITFIDLAGHERYLKTTVF----GMTGHVPD 313 (320)
Q Consensus 264 ~~~v~~~~~~----~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~----~LSG~~~~ 313 (320)
.+++...... .....+ ..+++.++++.+|+.+..++.+. +|||++..
T Consensus 854 ~E~L~~~a~l~~~~~~~~~~---~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrq 908 (1394)
T TIGR00956 854 RESLRFSAYLRQPKSVSKSE---KMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRK 908 (1394)
T ss_pred HHHHHHHHHhCCCCCCCHHH---HHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhh
Confidence 5555443211 122222 23344555566667777788776 79997654
No 365
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.19 E-value=3.2e-11 Score=102.75 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=41.9
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR 240 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~ 240 (320)
...++++++. |++++|+||||||||||+++|+ |+++|.+|++.+++.+
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~-G~~~~~~G~i~~~g~~ 63 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIIL-GLLKPDSGEIKVLGKD 63 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCeEEEECCEE
Confidence 3466777665 9999999999999999999999 9999999999987543
No 366
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.19 E-value=1.8e-11 Score=122.67 Aligned_cols=59 Identities=22% Similarity=0.332 Sum_probs=47.5
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK 237 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~ 237 (320)
.++++++++.|.. ...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.++
T Consensus 4 ~i~~~nls~~~~~---~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~-G~~~p~~G~i~~~ 65 (552)
T TIGR03719 4 IYTMNRVSKVVPP---KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMA-GVDKEFNGEARPA 65 (552)
T ss_pred EEEEeeEEEecCC---CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEec
Confidence 4566665554421 34577777775 9999999999999999999999 9999999999875
No 367
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.19 E-value=9.3e-12 Score=109.75 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=35.8
Q ss_pred cccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceee
Q psy15138 195 VESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHAR 235 (320)
Q Consensus 195 l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~ 235 (320)
+++++|. |++++|+||||||||||+++|+ |+++|++|++.
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~-Gl~~~~sG~i~ 45 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLC-GLDAPDEGDFI 45 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh-CCccCCCCCEE
Confidence 4455554 9999999999999999999999 99999999986
No 368
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.18 E-value=1.8e-11 Score=122.39 Aligned_cols=133 Identities=20% Similarity=0.186 Sum_probs=78.6
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~ 249 (320)
++++++++.|..+ ...+++++++. |++++|+||||||||||+++|+ |+++|++|++.+++.+.. .......
T Consensus 317 i~~~~v~~~y~~~--~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~-g~~~~~~G~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 317 LSVENVTIVPPGG--KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIV-GIWPPTSGSVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred EEEEEEEEEcCCC--CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEehhhCCHHHHhhh
Confidence 5556655555321 13467777775 9999999999999999999999 999999999998764411 1122334
Q ss_pred ceeeeccccCC-ccccceeecCCCCCCCHHhHHHHH--HHHHHHhccc--CCccccccccccccCCCC
Q psy15138 250 TSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICERS--AKVITFIDLA--GHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 250 v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~--~~~l~~l~l~--gl~~~~~~~~~~LSG~~~ 312 (320)
++.++|+...| .+..+++..... .....+..+.. ..+.++++.. |+..........|||++.
T Consensus 394 i~~v~q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~ 460 (544)
T TIGR01842 394 IGYLPQDVELFPGTVAENIARFGE-NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQR 460 (544)
T ss_pred eEEecCCcccccccHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHH
Confidence 55666665544 345555543221 12222221111 1112233322 444455556778998653
No 369
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.18 E-value=3.7e-11 Score=105.28 Aligned_cols=63 Identities=22% Similarity=0.266 Sum_probs=47.9
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR 240 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~ 240 (320)
.++++++.+.|... ...+++++++. |++++|+||||||||||+++|+ |+++|.+|++.+++..
T Consensus 6 ~l~~~~l~~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~-Gl~~~~~G~i~~~g~~ 71 (207)
T cd03369 6 EIEVENLSVRYAPD--LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALF-RFLEAEEGKIEIDGID 71 (207)
T ss_pred eEEEEEEEEEeCCC--CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHh-cccCCCCCeEEECCEE
Confidence 34555554444211 12466676665 9999999999999999999999 9999999999987543
No 370
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.18 E-value=1.9e-11 Score=122.93 Aligned_cols=92 Identities=21% Similarity=0.220 Sum_probs=62.2
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~ 249 (320)
++++++++.|.. ....+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. .......
T Consensus 314 I~~~~v~~~y~~--~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~-g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 390 (569)
T PRK10789 314 LDVNIRQFTYPQ--TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQ-RHFDVSEGDIRFHDIPLTKLQLDSWRSR 390 (569)
T ss_pred EEEEEEEEECCC--CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHh-cccCCCCCEEEECCEEHhhCCHHHHHhh
Confidence 455555544432 123467777775 9999999999999999999999 999999999998754421 1122334
Q ss_pred ceeeeccccCC-ccccceeecC
Q psy15138 250 TSSVGNDILGF-DSVGNVVNKP 270 (320)
Q Consensus 250 v~~~~~~~~~~-~~~~~~v~~~ 270 (320)
++.++|+...| .+..+++..+
T Consensus 391 i~~v~q~~~lf~~ti~~Ni~~~ 412 (569)
T PRK10789 391 LAVVSQTPFLFSDTVANNIALG 412 (569)
T ss_pred eEEEccCCeeccccHHHHHhcC
Confidence 55556655444 4556666543
No 371
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.18 E-value=3.4e-11 Score=101.68 Aligned_cols=51 Identities=24% Similarity=0.229 Sum_probs=43.0
Q ss_pred ecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138 189 YLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR 240 (320)
Q Consensus 189 ~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~ 240 (320)
|+...+++++++. |++++|+||||||||||+++|+ |+++|.+|++.+++.+
T Consensus 10 ~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~-G~~~~~~G~v~~~g~~ 63 (163)
T cd03216 10 FGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILS-GLYKPDSGEILVDGKE 63 (163)
T ss_pred ECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCeEEEECCEE
Confidence 3334566776665 9999999999999999999999 9999999999987543
No 372
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.18 E-value=3.2e-11 Score=100.80 Aligned_cols=130 Identities=19% Similarity=0.245 Sum_probs=78.1
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc----------
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---------- 241 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---------- 241 (320)
++++.++++ .|+.....++++|. ||.++|+|.|||||||||++|+ +.+.|+.|.+.+.....
T Consensus 6 LL~V~~lsk----~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is-~rl~p~~G~v~Y~~r~~~~~dl~~msE 80 (258)
T COG4107 6 LLSVSGLSK----LYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCIS-GRLTPDAGTVTYRMRDGQPRDLYTMSE 80 (258)
T ss_pred ceeehhhhh----hhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHh-cccCCCCCeEEEEcCCCCchhHhhhch
Confidence 445554443 44555556667775 9999999999999999999999 99999999998763220
Q ss_pred -h----hhhhcCcceeeeccccCCc-ccccee-ecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 242 -K----HEMESGRTSSVGNDILGFD-SVGNVV-NKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 242 -~----~~~~~g~v~~~~~~~~~~~-~~~~~v-~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
. .+...|.+.|++.+-+.+. +.+-++ ...+. .......+.+.+..+++-++.. ....+..|...||+.
T Consensus 81 aeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~--~~RiDD~PrtFSGGM 156 (258)
T COG4107 81 AERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEID--LDRIDDLPRTFSGGM 156 (258)
T ss_pred HHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccC--cccccCcccccchHH
Confidence 0 1123466666665544321 112222 11111 1111223444555555555442 356788899999964
No 373
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.18 E-value=2.9e-11 Score=121.91 Aligned_cols=132 Identities=20% Similarity=0.189 Sum_probs=77.9
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~ 249 (320)
++++++++.|... ..+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+. ........
T Consensus 335 i~~~~v~~~y~~~---~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~-g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 410 (585)
T TIGR01192 335 VEFRHITFEFANS---SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQ-RVYDPTVGQILIDGIDINTVTRESLRKS 410 (585)
T ss_pred EEEEEEEEECCCC---CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHc-cCCCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 4555555554321 3457777775 9999999999999999999999 99999999999875431 11122334
Q ss_pred ceeeeccccCC-ccccceeecCCCCCCCHHhHHHHHHH--HHHHh-cc-cCCccccccccccccCCCC
Q psy15138 250 TSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICERSAK--VITFI-DL-AGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 250 v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~--~l~~l-~l-~gl~~~~~~~~~~LSG~~~ 312 (320)
++.++|+...| .+..+++..+... ....+..+..+. +.+.+ .+ .|+..........|||++.
T Consensus 411 i~~v~q~~~lf~~ti~~Ni~~~~~~-~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~ 477 (585)
T TIGR01192 411 IATVFQDAGLFNRSIRENIRLGREG-ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGER 477 (585)
T ss_pred eEEEccCCccCcccHHHHHhcCCCC-CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHH
Confidence 55566655443 3455555543221 222222211111 11222 22 2344455666778998653
No 374
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=1.7e-11 Score=124.61 Aligned_cols=52 Identities=25% Similarity=0.266 Sum_probs=44.7
Q ss_pred eeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138 186 TGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL 238 (320)
Q Consensus 186 ~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~ 238 (320)
+..|+.+.++++++|. |++++|+||||||||||||+|+ |.++|++|+|.+..
T Consensus 8 s~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~-G~~~pd~G~I~~~~ 62 (638)
T PRK10636 8 QIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLK-NEISADGGSYTFPG 62 (638)
T ss_pred EEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEecC
Confidence 3445556678888876 9999999999999999999999 99999999998753
No 375
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.17 E-value=4.9e-11 Score=102.13 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=41.6
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR 240 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~ 240 (320)
..++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~ 63 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIA-GLEEPDSGSILIDGED 63 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEE
Confidence 4466666665 9999999999999999999999 9999999999987543
No 376
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.17 E-value=5.3e-11 Score=99.53 Aligned_cols=107 Identities=17% Similarity=0.057 Sum_probs=71.0
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc------hhhhhcCcceeeeccccCCccccceeecCCCCC
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH------KHEMESGRTSSVGNDILGFDSVGNVVNKPEHGS 274 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~------~~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~~~ 274 (320)
.|+.+=+||||||||||||..++ |++ |.+|+|.+.+... .....+.|.+|...-.+.++ +...+.. .
T Consensus 24 aGe~~HliGPNGaGKSTLLA~lA-Gm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mp-V~~YL~L----~ 96 (248)
T COG4138 24 AGEILHLVGPNGAGKSTLLARMA-GMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMP-VWHYLTL----H 96 (248)
T ss_pred cceEEEEECCCCccHHHHHHHHh-CCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhh-hhhhhhh----c
Confidence 39999999999999999999999 985 6799999986552 12234566666433222221 1111111 1
Q ss_pred CCHHhHHHHHHHHHHHhcccCCccccccccccccCCCCCEEEE
Q psy15138 275 LDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGML 317 (320)
Q Consensus 275 ~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~~~~l 317 (320)
.+. ++....+.+..++.++.+++.+.+++|||+.=..+-|
T Consensus 97 qP~---~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRL 136 (248)
T COG4138 97 QPD---KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRL 136 (248)
T ss_pred Cch---HHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEE
Confidence 111 3445566667777888999999999999976554443
No 377
>PLN03232 ABC transporter C family member; Provisional
Probab=99.16 E-value=3.2e-11 Score=132.78 Aligned_cols=92 Identities=17% Similarity=0.147 Sum_probs=67.6
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~ 249 (320)
++++++++.|..+ ...+++++++. |+++||+|+||||||||+++|. |+++|++|+|.+++.+. .....+..
T Consensus 1235 I~f~nVsf~Y~~~--~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~-rl~~p~~G~I~IdG~di~~i~~~~lR~~ 1311 (1495)
T PLN03232 1235 IKFEDVHLRYRPG--LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF-RIVELEKGRIMIDDCDVAKFGLTDLRRV 1311 (1495)
T ss_pred EEEEEEEEEECCC--CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCcCCCceEEECCEEhhhCCHHHHHhh
Confidence 5666666655321 23578888776 9999999999999999999999 99999999999986552 22233456
Q ss_pred ceeeeccccCC-ccccceeecC
Q psy15138 250 TSSVGNDILGF-DSVGNVVNKP 270 (320)
Q Consensus 250 v~~~~~~~~~~-~~~~~~v~~~ 270 (320)
++.++|+...| .+..+|+...
T Consensus 1312 i~iVpQdp~LF~gTIr~NL~~~ 1333 (1495)
T PLN03232 1312 LSIIPQSPVLFSGTVRFNIDPF 1333 (1495)
T ss_pred cEEECCCCeeeCccHHHHcCCC
Confidence 77777776665 4566666553
No 378
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.16 E-value=4.7e-11 Score=102.59 Aligned_cols=46 Identities=22% Similarity=0.182 Sum_probs=40.2
Q ss_pred ccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138 194 RVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR 240 (320)
Q Consensus 194 ~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~ 240 (320)
+++++++. |++++|+||||||||||+++|+ |+++|++|++.+++.+
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~g~~ 63 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALF-GLRPPASGEITLDGKP 63 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEE
Confidence 45555554 9999999999999999999999 9999999999987643
No 379
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.15 E-value=2.5e-11 Score=132.85 Aligned_cols=94 Identities=16% Similarity=0.098 Sum_probs=70.4
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC-----------------------
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN----------------------- 229 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~----------------------- 229 (320)
++++++++.|... +..+++++++|. |+++|||||||||||||+++|. |+++|
T Consensus 1166 I~f~nVsF~Y~~~-~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~-r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265 1166 IEIMDVNFRYISR-PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLM-RFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred EEEEEEEEECCCC-CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHH-HhCCCccccccccccccccccccccccc
Confidence 6677777776432 123578888776 9999999999999999999999 99998
Q ss_pred -------------------------------CCceeeeccccc---hhhhhcCcceeeeccccCC-ccccceeecCC
Q psy15138 230 -------------------------------GRGHARQKLFRH---KHEMESGRTSSVGNDILGF-DSVGNVVNKPE 271 (320)
Q Consensus 230 -------------------------------~~G~i~~~~~~~---~~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~ 271 (320)
.+|+|.+++.+. .....+..++.++|+...| .+..+++.++.
T Consensus 1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~ 1320 (1466)
T PTZ00265 1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGK 1320 (1466)
T ss_pred cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCC
Confidence 589999986552 2233456677777777666 56778877763
No 380
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.15 E-value=3.8e-11 Score=110.26 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=46.3
Q ss_pred eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138 174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL 238 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~ 238 (320)
..+++++++.. ...+++++++. |++++|+||||||||||+++|+ |+++|.+|+|.+++
T Consensus 38 ~~l~i~nls~~------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~-Gl~~p~~G~I~i~g 98 (282)
T cd03291 38 NNLFFSNLCLV------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLIL-GELEPSEGKIKHSG 98 (282)
T ss_pred CeEEEEEEEEe------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECC
Confidence 34566666542 13466666665 9999999999999999999999 99999999998753
No 381
>PRK13409 putative ATPase RIL; Provisional
Probab=99.14 E-value=3e-11 Score=121.52 Aligned_cols=53 Identities=19% Similarity=0.220 Sum_probs=41.8
Q ss_pred CCCeeeeecce-eccccCC--ccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceee
Q psy15138 182 DNGLTGQYLLR-KRVESQD--FLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHAR 235 (320)
Q Consensus 182 ~~~~~~~~~~~-~~l~~~~--~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~ 235 (320)
....+..|+.. ..|.+++ ..|++++|+||||||||||+|+|+ |+++|++|++.
T Consensus 76 ~~~~~~~yg~~~~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~-G~l~p~~G~i~ 131 (590)
T PRK13409 76 EEEPVHRYGVNGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILS-GELIPNLGDYE 131 (590)
T ss_pred ccCceEEecCCceeEecCCcCCCCCEEEEECCCCCCHHHHHHHHh-CCccCCCcccc
Confidence 44466666532 2444443 239999999999999999999999 99999999997
No 382
>PLN03130 ABC transporter C family member; Provisional
Probab=99.14 E-value=4.1e-11 Score=132.43 Aligned_cols=93 Identities=16% Similarity=0.100 Sum_probs=68.4
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g 248 (320)
.++++++++.|... ...+++++++. |+++||+|+||||||||+++|. |+++|++|+|.+++.+. .....+.
T Consensus 1237 ~I~f~nVsf~Y~~~--~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~-rl~~p~~G~I~IDG~dI~~i~l~~LR~ 1313 (1622)
T PLN03130 1237 SIKFEDVVLRYRPE--LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALF-RIVELERGRILIDGCDISKFGLMDLRK 1313 (1622)
T ss_pred cEEEEEEEEEeCCC--CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHh-CcCCCCCceEEECCEecccCCHHHHHh
Confidence 35667666666322 23477887776 9999999999999999999999 99999999999986542 2223345
Q ss_pred cceeeeccccCC-ccccceeecC
Q psy15138 249 RTSSVGNDILGF-DSVGNVVNKP 270 (320)
Q Consensus 249 ~v~~~~~~~~~~-~~~~~~v~~~ 270 (320)
.++.++|+...| .+..+|+...
T Consensus 1314 ~IsiVpQdp~LF~GTIreNLd~~ 1336 (1622)
T PLN03130 1314 VLGIIPQAPVLFSGTVRFNLDPF 1336 (1622)
T ss_pred ccEEECCCCccccccHHHHhCcC
Confidence 677777777666 4566666553
No 383
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.14 E-value=7.4e-11 Score=100.92 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=43.0
Q ss_pred CeeeeecceeccccC-Cc-cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138 184 GLTGQYLLRKRVESQ-DF-LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL 238 (320)
Q Consensus 184 ~~~~~~~~~~~l~~~-~~-~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~ 238 (320)
++...|+...++.+. .+ .|++++|+||||||||||+++|+ |+++|++|+|.+++
T Consensus 5 ~l~~~~~~~~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g 60 (177)
T cd03222 5 DCVKRYGVFFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILA-GQLIPNGDNDEWDG 60 (177)
T ss_pred CeEEEECCEEEEccCcEECCCCEEEEECCCCChHHHHHHHHH-cCCCCCCcEEEECC
Confidence 344555555555543 22 29999999999999999999999 99999999999864
No 384
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.14 E-value=8.8e-11 Score=114.02 Aligned_cols=87 Identities=24% Similarity=0.325 Sum_probs=72.3
Q ss_pred CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCC--CCchhHHHHHHHHHHcCC-CcEEEEeCCCCCC--hhHH
Q psy15138 12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANA--GIVGMTKEHLGLALALSV-PVFVVVTKIDMCP--PNVL 84 (320)
Q Consensus 12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~--g~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~--~~~l 84 (320)
....+.|+|+|||++|. |+.++..+|.+++ |+++++ |+.+++++|+.+++.+++ |+++++||+|+.. .+.+
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~il--VvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVL--VVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEE--EEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHH
Confidence 34568999999999998 8899999999999 999999 999999999999999999 5788999999964 4556
Q ss_pred HHHHHHHHHhhcCCCc
Q psy15138 85 QDTLKLLVRILKSPGC 100 (320)
Q Consensus 85 e~~l~~~~~~l~~~~~ 100 (320)
+...+++...+...++
T Consensus 160 ~~~~~~i~~~l~~~g~ 175 (425)
T PRK12317 160 EEVKEEVSKLLKMVGY 175 (425)
T ss_pred HHHHHHHHHHHHhhCC
Confidence 6666777766554333
No 385
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.14 E-value=1.2e-10 Score=112.54 Aligned_cols=111 Identities=21% Similarity=0.217 Sum_probs=83.0
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCC-chhHHHHHHHHHHcCC-CcEEEEeCCCCCChhHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGI-VGMTKEHLGLALALSV-PVFVVVTKIDMCPPNVLQDTLK 89 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~-~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~~~~le~~l~ 89 (320)
..+.|+|+|||++|. ++.++.++|.+++ |+++++|. .+++++|+..++.+++ |+++++||+|+.+.++.....+
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~ll--VVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAIL--VIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEE--EEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHH
Confidence 468999999999999 9999999999999 99999998 8999999999999999 5788899999988766665566
Q ss_pred HHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138 90 LLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL 127 (320)
Q Consensus 90 ~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~ 127 (320)
++...+........+. +..+..+.+..+++...+...
T Consensus 163 ~i~~~l~~~~~~~~~i-i~vSA~~g~gI~~L~~~L~~~ 199 (411)
T PRK04000 163 QIKEFVKGTVAENAPI-IPVSALHKVNIDALIEAIEEE 199 (411)
T ss_pred HHHHHhccccCCCCeE-EEEECCCCcCHHHHHHHHHHh
Confidence 6666554321111111 113335555666666665543
No 386
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.13 E-value=6.2e-11 Score=100.83 Aligned_cols=47 Identities=28% Similarity=0.290 Sum_probs=41.4
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR 240 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~ 240 (320)
.++++++|. |++++|+||||||||||+++|+ |+++|.+|++.+++..
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~-G~~~~~~G~i~~~g~~ 65 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLL-RLYDPTSGEILIDGVD 65 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHH-cCCCCCCCEEEECCEE
Confidence 466666665 9999999999999999999999 9999999999987643
No 387
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.12 E-value=6.9e-11 Score=100.71 Aligned_cols=46 Identities=26% Similarity=0.338 Sum_probs=40.2
Q ss_pred ccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138 194 RVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR 240 (320)
Q Consensus 194 ~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~ 240 (320)
.++++++. |++++|+||||||||||+++|+ |+++|.+|++.+++.+
T Consensus 17 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~-G~~~~~~G~i~~~g~~ 65 (173)
T cd03246 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLIL-GLLRPTSGRVRLDGAD 65 (173)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHH-hccCCCCCeEEECCEE
Confidence 55655554 9999999999999999999999 9999999999987543
No 388
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.12 E-value=9.1e-11 Score=113.93 Aligned_cols=86 Identities=23% Similarity=0.297 Sum_probs=72.5
Q ss_pred CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCC---CchhHHHHHHHHHHcCC-CcEEEEeCCCCC--ChhHH
Q psy15138 13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAG---IVGMTKEHLGLALALSV-PVFVVVTKIDMC--PPNVL 84 (320)
Q Consensus 13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g---~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~--~~~~l 84 (320)
+..+.|+|+|||++|. |+.+...+|.+++ |+++++| ..+++++|+.+++.+++ |.+|++||+|+. +.+.+
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~il--VvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVL--VVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEE--EEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHH
Confidence 4568899999999998 8889999999999 9999999 88999999999999998 577889999997 45666
Q ss_pred HHHHHHHHHhhcCCCc
Q psy15138 85 QDTLKLLVRILKSPGC 100 (320)
Q Consensus 85 e~~l~~~~~~l~~~~~ 100 (320)
+...+++...++..++
T Consensus 162 ~~~~~ei~~~~~~~g~ 177 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGY 177 (426)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 6677777777654443
No 389
>KOG0056|consensus
Probab=99.12 E-value=1.4e-10 Score=110.41 Aligned_cols=94 Identities=18% Similarity=0.170 Sum_probs=64.9
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g 248 (320)
-+++.++++.|..+ ++++++++|. |+.+|+|||||+||||++|+|- ++.+..+|.|++++.+.. ....+.
T Consensus 537 ~i~fsnvtF~Y~p~---k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLf-Rffdv~sGsI~iDgqdIrnvt~~SLRs 612 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPG---KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLF-RFFDVNSGSITIDGQDIRNVTQSSLRS 612 (790)
T ss_pred eEEEEEeEEecCCC---CceeecceEEecCCcEEEEECCCCCchhHHHHHHH-HHhhccCceEEEcCchHHHHHHHHHHH
Confidence 34667777777654 4455666664 9999999999999999999999 999999999999876521 112223
Q ss_pred cceeeeccccCC-ccccceeecCCC
Q psy15138 249 RTSSVGNDILGF-DSVGNVVNKPEH 272 (320)
Q Consensus 249 ~v~~~~~~~~~~-~~~~~~v~~~~~ 272 (320)
.++-++|+-..| ++...++.++..
T Consensus 613 ~IGVVPQDtvLFNdTI~yNIryak~ 637 (790)
T KOG0056|consen 613 SIGVVPQDTVLFNDTILYNIRYAKP 637 (790)
T ss_pred hcCcccCcceeecceeeeheeecCC
Confidence 333444444443 566666666544
No 390
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.12 E-value=9.4e-11 Score=101.82 Aligned_cols=64 Identities=23% Similarity=0.143 Sum_probs=48.4
Q ss_pred eeeeecCCCeeeee--cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcC--CCCCceeeecccc
Q psy15138 176 LRQRKLDNGLTGQY--LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGEL--DNGRGHARQKLFR 240 (320)
Q Consensus 176 ~~~~~~~~~~~~~~--~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l--~~~~G~i~~~~~~ 240 (320)
++++++++.|.... ....+++++++. |++++|+||||||||||+++|+ |++ +|.+|+|.+++.+
T Consensus 4 l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~-Gl~~~~~~~G~i~~~g~~ 74 (194)
T cd03213 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALA-GRRTGLGVSGEVLINGRP 74 (194)
T ss_pred EEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCCceEEEECCEe
Confidence 45555555543210 013467777665 9999999999999999999999 999 9999999987654
No 391
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.12 E-value=6.6e-11 Score=130.55 Aligned_cols=90 Identities=17% Similarity=0.088 Sum_probs=67.1
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~ 249 (320)
++++++++.|..+ ...+++++++. |+++||+|+||||||||+++|. |+++|++|+|.+++.+. .....+..
T Consensus 1285 I~f~nVsf~Y~~~--~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~-rl~~~~~G~I~IdG~dI~~i~~~~LR~~ 1361 (1522)
T TIGR00957 1285 VEFRNYCLRYRED--LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLF-RINESAEGEIIIDGLNIAKIGLHDLRFK 1361 (1522)
T ss_pred EEEEEEEEEeCCC--CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHh-cCccCCCCeEEECCEEccccCHHHHHhc
Confidence 5666666555432 13578888876 9999999999999999999999 99999999999986552 22233566
Q ss_pred ceeeeccccCC-ccccceee
Q psy15138 250 TSSVGNDILGF-DSVGNVVN 268 (320)
Q Consensus 250 v~~~~~~~~~~-~~~~~~v~ 268 (320)
++.++|+...| .+..+|+.
T Consensus 1362 i~iVpQdp~LF~gTIr~NLd 1381 (1522)
T TIGR00957 1362 ITIIPQDPVLFSGSLRMNLD 1381 (1522)
T ss_pred CeEECCCCcccCccHHHHcC
Confidence 77777777666 45666665
No 392
>PTZ00243 ABC transporter; Provisional
Probab=99.11 E-value=7.8e-11 Score=129.92 Aligned_cols=92 Identities=21% Similarity=0.157 Sum_probs=68.6
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g 248 (320)
.++++++++.|..+ ...++++++|. |+++||+|+||||||||+++|. |+++|.+|+|.+++.+. .....+.
T Consensus 1308 ~I~f~nVsf~Y~~~--~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLl-rl~~p~~G~I~IDG~di~~i~l~~LR~ 1384 (1560)
T PTZ00243 1308 SLVFEGVQMRYREG--LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFM-RMVEVCGGEIRVNGREIGAYGLRELRR 1384 (1560)
T ss_pred eEEEEEEEEEeCCC--CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEEcccCCHHHHHh
Confidence 36677776666432 13467777776 9999999999999999999999 99999999999986552 2223356
Q ss_pred cceeeeccccCC-ccccceeec
Q psy15138 249 RTSSVGNDILGF-DSVGNVVNK 269 (320)
Q Consensus 249 ~v~~~~~~~~~~-~~~~~~v~~ 269 (320)
.++.++|+...| .+..+|+..
T Consensus 1385 ~I~iVpQdp~LF~gTIreNIdp 1406 (1560)
T PTZ00243 1385 QFSMIPQDPVLFDGTVRQNVDP 1406 (1560)
T ss_pred cceEECCCCccccccHHHHhCc
Confidence 677788887766 456666653
No 393
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.11 E-value=8.7e-11 Score=101.82 Aligned_cols=65 Identities=23% Similarity=0.178 Sum_probs=47.2
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcC--CCCCceeeecccc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGEL--DNGRGHARQKLFR 240 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l--~~~~G~i~~~~~~ 240 (320)
.++++++.+.|........+++++++. |++++|+||||||||||+++|+ |+. +|++|++.+++.+
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~-G~~~~~~~~G~i~~~g~~ 72 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLA-GRKTAGVITGEILINGRP 72 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHh-CCCcCCCcceEEEECCEe
Confidence 345555554443210113466777765 9999999999999999999999 986 4899999987544
No 394
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.10 E-value=3.3e-11 Score=123.00 Aligned_cols=122 Identities=13% Similarity=0.114 Sum_probs=71.7
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCccee
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSS 252 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~ 252 (320)
++++++++.|. ....+++++++. |++++|+||||||||||+++|+ |+++|++|++.... ...++.
T Consensus 452 i~~~nv~~~~~---~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~-Gl~~~~~G~i~~~~--------~~~i~~ 519 (659)
T TIGR00954 452 IKFENIPLVTP---NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILG-ELWPVYGGRLTKPA--------KGKLFY 519 (659)
T ss_pred EEEEeeEEECC---CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCeEeecC--------CCcEEE
Confidence 45555554432 123567777765 9999999999999999999999 99999999987642 123344
Q ss_pred eeccccCC-ccccceeecCCCC-CCCHHhHHHHHHHHHHHhcccCCccccccc---------cccccCCC
Q psy15138 253 VGNDILGF-DSVGNVVNKPEHG-SLDWVKICERSAKVITFIDLAGHERYLKTT---------VFGMTGHV 311 (320)
Q Consensus 253 ~~~~~~~~-~~~~~~v~~~~~~-~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~---------~~~LSG~~ 311 (320)
++|+...+ .+..+++..+... ....... ..+++.+.++.+++.++.+++ ...|||++
T Consensus 520 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~--~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGq 587 (659)
T TIGR00954 520 VPQRPYMTLGTLRDQIIYPDSSEDMKRRGL--SDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGE 587 (659)
T ss_pred ECCCCCCCCcCHHHHHhcCCChhhhhccCC--CHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHH
Confidence 44444332 2455555443211 0000000 112333445555555554442 36899964
No 395
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.09 E-value=1e-10 Score=100.11 Aligned_cols=47 Identities=28% Similarity=0.425 Sum_probs=40.8
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR 240 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~ 240 (320)
.+++++++. |++++|+||||||||||+++|+ |+++|.+|++.+++.+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~-G~~~~~~G~i~~~g~~ 65 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLT-GDLKPQQGEITLDGVP 65 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHh-ccCCCCCCEEEECCEE
Confidence 356666654 9999999999999999999999 9999999999987643
No 396
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.09 E-value=9.4e-11 Score=97.00 Aligned_cols=45 Identities=31% Similarity=0.417 Sum_probs=39.8
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL 238 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~ 238 (320)
..+++++|. |++++|+||||||||||+++|+ |+++|.+|+|.+++
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~-G~~~~~~G~i~~~~ 61 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIA-GELEPDEGIVTWGS 61 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHc-CCCCCCceEEEECC
Confidence 456666664 9999999999999999999999 99999999998864
No 397
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.09 E-value=1.3e-10 Score=98.47 Aligned_cols=45 Identities=24% Similarity=0.308 Sum_probs=40.0
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL 238 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~ 238 (320)
..++++++. |++++|+||||||||||+++|+ |+++|++|++.+..
T Consensus 15 ~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~-G~~~~~~G~i~~~~ 62 (166)
T cd03223 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALA-GLWPWGSGRIGMPE 62 (166)
T ss_pred eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCceEEECC
Confidence 456666665 9999999999999999999999 99999999998854
No 398
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.09 E-value=1.9e-10 Score=100.28 Aligned_cols=49 Identities=20% Similarity=0.180 Sum_probs=42.2
Q ss_pred ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCc--CCCCCceeeecccc
Q psy15138 191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGE--LDNGRGHARQKLFR 240 (320)
Q Consensus 191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~--l~~~~G~i~~~~~~ 240 (320)
...++++++|. |++++|+||||||||||+++|+ |+ ++|++|++.+++.+
T Consensus 12 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~-G~~~~~p~~G~i~~~g~~ 65 (200)
T cd03217 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIM-GHPKYEVTEGEILFKGED 65 (200)
T ss_pred CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHh-CCCcCCCCccEEEECCEE
Confidence 34567777775 9999999999999999999999 99 57999999987643
No 399
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.09 E-value=1.5e-10 Score=102.62 Aligned_cols=65 Identities=23% Similarity=0.189 Sum_probs=59.6
Q ss_pred CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC
Q psy15138 13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC 79 (320)
Q Consensus 13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~ 79 (320)
+..+.|+|+|||++|. +..+...+|.+++ |+++.+|++++|++++..+...++|+++++||+|+.
T Consensus 72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~il--VvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEVTAALRLCDGALV--VVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred ceEEEEECCCCccccHHHHHHHHHhcCeeEE--EEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 3457889999999999 7888899999999 999999999999999999999999999999999985
No 400
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.08 E-value=1.7e-10 Score=102.08 Aligned_cols=85 Identities=28% Similarity=0.262 Sum_probs=69.3
Q ss_pred CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCC-------CCchhHHHHHHHHHHcCC-CcEEEEeCCCCCC-
Q psy15138 12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANA-------GIVGMTKEHLGLALALSV-PVFVVVTKIDMCP- 80 (320)
Q Consensus 12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~-------g~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~- 80 (320)
....+.|+|+|||.+|. ++.++..+|.+++ ||++.+ ++.+++++|+.++..+++ |+++++||+|+..
T Consensus 75 ~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~--VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~ 152 (219)
T cd01883 75 EKYRFTILDAPGHRDFVPNMITGASQADVAVL--VVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTV 152 (219)
T ss_pred CCeEEEEEECCChHHHHHHHHHHhhhCCEEEE--EEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 34568999999999999 7888889999988 999998 567899999999999998 6777999999973
Q ss_pred ---hhHHHHHHHHHHHhhcCC
Q psy15138 81 ---PNVLQDTLKLLVRILKSP 98 (320)
Q Consensus 81 ---~~~le~~l~~~~~~l~~~ 98 (320)
...++...+++...+...
T Consensus 153 ~~~~~~~~~i~~~l~~~l~~~ 173 (219)
T cd01883 153 NWSEERYDEIKKELSPFLKKV 173 (219)
T ss_pred cccHHHHHHHHHHHHHHHHHc
Confidence 456677777776655543
No 401
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.07 E-value=4.3e-11 Score=131.09 Aligned_cols=93 Identities=18% Similarity=0.188 Sum_probs=61.7
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec-cccc---hhhhhcC
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK-LFRH---KHEMESG 248 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~-~~~~---~~~~~~g 248 (320)
++++++++.|... ....+++++++. |++++|+||||||||||+++|+ |+++|++|+|.++ +.+. .....+.
T Consensus 383 I~~~nVsf~Y~~~-~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~-gl~~p~~G~I~i~~g~~i~~~~~~~lr~ 460 (1466)
T PTZ00265 383 IQFKNVRFHYDTR-KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIE-RLYDPTEGDIIINDSHNLKDINLKWWRS 460 (1466)
T ss_pred EEEEEEEEEcCCC-CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHH-HhccCCCCeEEEeCCcchhhCCHHHHHH
Confidence 5566666555321 113477777775 9999999999999999999999 9999999999994 2221 1111223
Q ss_pred cceeeeccccCC-ccccceeecC
Q psy15138 249 RTSSVGNDILGF-DSVGNVVNKP 270 (320)
Q Consensus 249 ~v~~~~~~~~~~-~~~~~~v~~~ 270 (320)
.++.++|+...| .+..+++..+
T Consensus 461 ~Ig~V~Q~~~LF~~TI~eNI~~g 483 (1466)
T PTZ00265 461 KIGVVSQDPLLFSNSIKNNIKYS 483 (1466)
T ss_pred hccEecccccchhccHHHHHHhc
Confidence 445555554444 3555666543
No 402
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.07 E-value=7e-11 Score=109.90 Aligned_cols=85 Identities=24% Similarity=0.140 Sum_probs=63.0
Q ss_pred eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc---chhhhhc
Q psy15138 174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR---HKHEMES 247 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~---~~~~~~~ 247 (320)
.-++++++.+.|... .-.+.+++++ ||.+-|+|.||||||||+++|+ |+++|++|+|++++.. ...+..+
T Consensus 321 ~~lelrnvrfay~~~---~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLt-GL~~PqsG~I~ldg~pV~~e~ledYR 396 (546)
T COG4615 321 KTLELRNVRFAYQDN---AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLT-GLYQPQSGEILLDGKPVSAEQLEDYR 396 (546)
T ss_pred cceeeeeeeeccCcc---cceecceeeEEecCcEEEEECCCCCcHHHHHHHHh-cccCCCCCceeECCccCCCCCHHHHH
Confidence 345666666555332 1234444443 9999999999999999999999 9999999999999654 3334456
Q ss_pred CcceeeeccccCCcc
Q psy15138 248 GRTSSVGNDILGFDS 262 (320)
Q Consensus 248 g~v~~~~~~~~~~~~ 262 (320)
+.++.+|.++..|+.
T Consensus 397 ~LfSavFsDyhLF~~ 411 (546)
T COG4615 397 KLFSAVFSDYHLFDQ 411 (546)
T ss_pred HHHHHHhhhHhhhHh
Confidence 777888888877754
No 403
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.06 E-value=9e-11 Score=100.31 Aligned_cols=41 Identities=29% Similarity=0.308 Sum_probs=34.3
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK 237 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~ 237 (320)
..++++++|+ |++++|+|||||||||||++|. + .+|++++.
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il-~----~~G~v~~~ 51 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL-Y----ASGKARLI 51 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh-h----cCCcEEEC
Confidence 4556777775 9999999999999999999997 4 58888765
No 404
>KOG0061|consensus
Probab=99.06 E-value=1.1e-10 Score=117.70 Aligned_cols=122 Identities=19% Similarity=0.137 Sum_probs=77.3
Q ss_pred ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC---CCceeeeccccchhhhhcCcceeeecccc--CCcc
Q psy15138 191 LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN---GRGHARQKLFRHKHEMESGRTSSVGNDIL--GFDS 262 (320)
Q Consensus 191 ~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~---~~G~i~~~~~~~~~~~~~g~v~~~~~~~~--~~~~ 262 (320)
.++.+++++.. |+..||+|||||||||||++|+ |..+. .+|+|.+++.....+......+.+.|+-. +..+
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~La-gr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LT 120 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALA-GRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLT 120 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHh-ccccCCCcceEEEEECCccCchhhhhheeEEEccccccccccc
Confidence 35566666554 9999999999999999999999 98875 57999999744332222333344444433 2345
Q ss_pred ccceeecCCCCCCCHH-hHHHHHHHHHHHhcccCCccccccccc-----cccCCCCC
Q psy15138 263 VGNVVNKPEHGSLDWV-KICERSAKVITFIDLAGHERYLKTTVF-----GMTGHVPD 313 (320)
Q Consensus 263 ~~~~v~~~~~~~~~~~-~~~~~~~~~l~~l~l~gl~~~~~~~~~-----~LSG~~~~ 313 (320)
+.+.+.+.....++.. ...++.+++.+.++..|+.+..++.+. ++||++.-
T Consensus 121 V~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErk 177 (613)
T KOG0061|consen 121 VRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERK 177 (613)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhh
Confidence 5555554433222221 223344455555556666777778775 79998754
No 405
>PLN03140 ABC transporter G family member; Provisional
Probab=99.04 E-value=1.2e-10 Score=127.28 Aligned_cols=117 Identities=17% Similarity=0.141 Sum_probs=72.3
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCC--CCceeeeccccchhhhhcCcceeeeccccCC--cccc
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDN--GRGHARQKLFRHKHEMESGRTSSVGNDILGF--DSVG 264 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~--~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~--~~~~ 264 (320)
+.+++++++. |+.++|+|||||||||||++|+ |..++ .+|++.+++.+.........++.++|+...+ .++.
T Consensus 893 ~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~La-G~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~ 971 (1470)
T PLN03140 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLA-GRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVR 971 (1470)
T ss_pred ceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHc-CCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHH
Confidence 4577777775 9999999999999999999999 98764 5799998765422111122234444443222 3455
Q ss_pred ceeecCCCC----CCCHHhHHHHHHHHHHHhcccCCcccccccc-----ccccCCCC
Q psy15138 265 NVVNKPEHG----SLDWVKICERSAKVITFIDLAGHERYLKTTV-----FGMTGHVP 312 (320)
Q Consensus 265 ~~v~~~~~~----~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~-----~~LSG~~~ 312 (320)
+++...... .....+ +.+.+.++++.+|+.+..++.+ .+|||++.
T Consensus 972 E~L~~~a~lr~~~~~~~~~---~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGer 1025 (1470)
T PLN03140 972 ESLIYSAFLRLPKEVSKEE---KMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025 (1470)
T ss_pred HHHHHHHHhCCCCCCCHHH---HHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHH
Confidence 555432211 112222 2234455556666677777765 68999653
No 406
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.03 E-value=1.2e-09 Score=99.68 Aligned_cols=80 Identities=18% Similarity=0.114 Sum_probs=66.5
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL 91 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~ 91 (320)
..+.++|+|||.+|. +..+...+|.+++ ||++.+|+.+++++++..++..++|.++++||+|+.... .+..++++
T Consensus 64 ~~i~liDTPG~~df~~~~~~~l~~aD~ail--VVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~-~~~~~~~l 140 (270)
T cd01886 64 HRINIIDTPGHVDFTIEVERSLRVLDGAVA--VFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGAD-FFRVVEQI 140 (270)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHHcCEEEE--EEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHH
Confidence 457889999999999 6777888899988 999999999999999999999999999999999997432 34455555
Q ss_pred HHhhc
Q psy15138 92 VRILK 96 (320)
Q Consensus 92 ~~~l~ 96 (320)
+..+.
T Consensus 141 ~~~l~ 145 (270)
T cd01886 141 REKLG 145 (270)
T ss_pred HHHhC
Confidence 55554
No 407
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.02 E-value=1.4e-09 Score=90.62 Aligned_cols=108 Identities=24% Similarity=0.242 Sum_probs=77.3
Q ss_pred CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCC-CcEEEEeCCCCCChhHHHHHHH
Q psy15138 13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSV-PVFVVVTKIDMCPPNVLQDTLK 89 (320)
Q Consensus 13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~~~~le~~l~ 89 (320)
...+.++|+|||++|. +.....++|.+++ |+++++++.+++++++.+++..+. |+++++||+|+....+.+...+
T Consensus 50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~--V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~ 127 (164)
T cd04171 50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL--VVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEE 127 (164)
T ss_pred CcEEEEEECCChHHHHHHHHhhhhcCCEEEE--EEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHH
Confidence 3468899999999998 6666788999888 999999999999999988888888 8889999999987665555555
Q ss_pred HHHHhhcCCCccccCccccc-cCCchhHHHHHHHHH
Q psy15138 90 LLVRILKSPGCRKVPVMNCL-ISPTEEQFDLLQKKI 124 (320)
Q Consensus 90 ~~~~~l~~~~~~~i~~kl~~-~~gnyd~~~~l~~q~ 124 (320)
++.+.+........+ +.. ...+.++++++...+
T Consensus 128 ~~~~~~~~~~~~~~~--~~~~Sa~~~~~v~~l~~~l 161 (164)
T cd04171 128 EIRELLAGTFLADAP--IFPVSAVTGEGIEELKEYL 161 (164)
T ss_pred HHHHHHHhcCcCCCc--EEEEeCCCCcCHHHHHHHH
Confidence 665554432111221 222 234445566555443
No 408
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.02 E-value=8.3e-11 Score=104.46 Aligned_cols=116 Identities=73% Similarity=1.128 Sum_probs=90.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCCccccceeecCCCCCC-CHHhHHH
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSL-DWVKICE 282 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~ 282 (320)
+++++|++|+|||||++.+.++..+++.|..+....++.|+...|.++......++|+..+..+++...... ...+..+
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 478999999999999999987888999999998888889999999998888888888776655554322111 0011112
Q ss_pred HHHHHHHHhcccCCccccccccccccCCCCCEEEEEe
Q psy15138 283 RSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLMH 319 (320)
Q Consensus 283 ~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~~~~l~v 319 (320)
...+.+.++|..|+.++.+....+++++.+|++++||
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVv 117 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVV 117 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEE
Confidence 2345667899999999999999999998999999886
No 409
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.02 E-value=2.3e-10 Score=114.85 Aligned_cols=80 Identities=21% Similarity=0.185 Sum_probs=68.1
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL 91 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~ 91 (320)
..+.++|+|||++|. +..+...+|.+++ ||++.+|+++||++|+..+...++|.++++||+|+... +.++.++++
T Consensus 64 ~kinlIDTPGh~DF~~ev~~~l~~aD~alL--VVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a-~~~~v~~ei 140 (594)
T TIGR01394 64 TKINIVDTPGHADFGGEVERVLGMVDGVLL--LVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSA-RPDEVVDEV 140 (594)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHhCCEEEE--EEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCc-CHHHHHHHH
Confidence 468899999999998 6777888999999 99999999999999999999999999999999998642 345555666
Q ss_pred HHhhc
Q psy15138 92 VRILK 96 (320)
Q Consensus 92 ~~~l~ 96 (320)
...+.
T Consensus 141 ~~l~~ 145 (594)
T TIGR01394 141 FDLFA 145 (594)
T ss_pred HHHHH
Confidence 66554
No 410
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.01 E-value=5.1e-10 Score=112.19 Aligned_cols=64 Identities=30% Similarity=0.328 Sum_probs=59.8
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~ 80 (320)
.+.|+|+|||++|. +..++..+|.+++ |+++++|+++||++|+..++..++|.++++||+|+..
T Consensus 136 ~i~~iDTPGhe~F~~~r~rga~~aDiaIL--VVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 136 MITFLDTPGHEAFTSMRARGAKVTDIVVL--VVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPE 201 (587)
T ss_pred EEEEEECCCCcchhhHHHhhhccCCEEEE--EEECCCCCCHhHHHHHHHHHHcCCCEEEEEECccccc
Confidence 79999999999998 6668999999999 9999999999999999999999999999999999953
No 411
>KOG0466|consensus
Probab=99.01 E-value=3.9e-10 Score=101.52 Aligned_cols=88 Identities=17% Similarity=0.223 Sum_probs=74.9
Q ss_pred eEEEeCCCcchhh--ccCCCCccchhhhccceecCC-CCchhHHHHHHHHHHcCCC-cEEEEeCCCCCChhHHHHHHHHH
Q psy15138 16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANA-GIVGMTKEHLGLALALSVP-VFVVVTKIDMCPPNVLQDTLKLL 91 (320)
Q Consensus 16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~-g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~~~~le~~l~~~ 91 (320)
++|+|+|||.=+. |+.|++-+|.++| .+++|+ -++|||-|||+-...+.+. ++++-||+||..++.-.+.-+++
T Consensus 127 VSfVDCPGHDiLMaTMLnGaAvmDaalL--lIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e~~A~eq~e~I 204 (466)
T KOG0466|consen 127 VSFVDCPGHDILMATMLNGAAVMDAALL--LIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKESQALEQHEQI 204 (466)
T ss_pred EEeccCCchHHHHHHHhcchHHhhhhhh--hhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhHHHHHHHHHHH
Confidence 8999999999888 9999999999999 999997 5689999999999999995 55555999999887766667888
Q ss_pred HHhhcCCCccccCc
Q psy15138 92 VRILKSPGCRKVPV 105 (320)
Q Consensus 92 ~~~l~~~~~~~i~~ 105 (320)
.+++...+....|.
T Consensus 205 ~kFi~~t~ae~aPi 218 (466)
T KOG0466|consen 205 QKFIQGTVAEGAPI 218 (466)
T ss_pred HHHHhccccCCCce
Confidence 88888766655443
No 412
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.00 E-value=3.4e-10 Score=123.79 Aligned_cols=120 Identities=16% Similarity=0.119 Sum_probs=72.0
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcC----CCCCceeeeccccchh--hhhcCcceeeeccccCC--
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGEL----DNGRGHARQKLFRHKH--EMESGRTSSVGNDILGF-- 260 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l----~~~~G~i~~~~~~~~~--~~~~g~v~~~~~~~~~~-- 260 (320)
+.+++++++. |+.++|+||||||||||||+|+ |.. .|.+|+|.+++.+... ...++.++.++|+...+
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~La-G~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIA-SNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh-CCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 4566776665 9999999999999999999999 986 4689999998654211 11223345555543322
Q ss_pred ccccceeecCCCC--------CCCHHhHHHHHHHHHHHhcccCCcccccc-----ccccccCCCCCE
Q psy15138 261 DSVGNVVNKPEHG--------SLDWVKICERSAKVITFIDLAGHERYLKT-----TVFGMTGHVPDF 314 (320)
Q Consensus 261 ~~~~~~v~~~~~~--------~~~~~~~~~~~~~~l~~l~l~gl~~~~~~-----~~~~LSG~~~~~ 314 (320)
.++.+++..+... .....+..++. ...+++.+|+.+..++ .+.+|||++.-.
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkR 217 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHI--ADVYMATYGLSHTRNTKVGNDFVRGVSGGERKR 217 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH--HHHHHHHcCcccccCceeCCCcCCCCCcccchH
Confidence 3555555443211 11222211111 1234555566665554 468999987543
No 413
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.00 E-value=4.6e-10 Score=115.31 Aligned_cols=66 Identities=29% Similarity=0.311 Sum_probs=60.5
Q ss_pred CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138 13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP 80 (320)
Q Consensus 13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~ 80 (320)
...+.|+|+|||++|. +..++..+|.++| |+++++|++++|++|+..++..++|++|++||+|+..
T Consensus 336 ~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL--VVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 336 GGKITFLDTPGHEAFTAMRARGAQVTDIVVL--VVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPG 403 (787)
T ss_pred CEEEEEEECCCCccchhHHHhhhhhCCEEEE--EEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccc
Confidence 3568999999999999 5667888999999 9999999999999999999999999999999999964
No 414
>PLN03140 ABC transporter G family member; Provisional
Probab=98.99 E-value=4.5e-10 Score=122.86 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=52.8
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCC---CceeeeccccchhhhhcCcceeeeccccCC--ccc
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNG---RGHARQKLFRHKHEMESGRTSSVGNDILGF--DSV 263 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~---~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~--~~~ 263 (320)
+.+++++++. |+.++|+||||||||||||+|+ |.++|+ +|+|.+++.+.......+.++.++|+...+ .++
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~La-G~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALA-GKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHh-CCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 4466776664 9999999999999999999999 999998 999999865422111123344444443222 345
Q ss_pred cceeec
Q psy15138 264 GNVVNK 269 (320)
Q Consensus 264 ~~~v~~ 269 (320)
.+.+.+
T Consensus 257 ~EtL~f 262 (1470)
T PLN03140 257 KETLDF 262 (1470)
T ss_pred HHHHHH
Confidence 555543
No 415
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.98 E-value=4.7e-10 Score=123.57 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=76.4
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~ 249 (320)
++++++++.|... ...++++++|. |+++||+|+||||||||+++|. |+++ .+|+|.+++.+. .....+..
T Consensus 1218 I~f~nVs~~Y~~~--~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~-rl~~-~~G~I~IdG~di~~i~~~~lR~~ 1293 (1490)
T TIGR01271 1218 MDVQGLTAKYTEA--GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL-RLLS-TEGEIQIDGVSWNSVTLQTWRKA 1293 (1490)
T ss_pred EEEEEEEEEeCCC--CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHh-hhcC-CCcEEEECCEEcccCCHHHHHhc
Confidence 4555555555321 24577887776 9999999999999999999999 9997 799999986552 22334567
Q ss_pred ceeeeccccCC-ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCcccccccc
Q psy15138 250 TSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTV 304 (320)
Q Consensus 250 v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~ 304 (320)
++.++|+...| .+..+|+.... ... .+++.+.++.+++.++..+.|
T Consensus 1294 is~IpQdp~LF~GTIR~NLdp~~--~~t-------deei~~aL~~~~L~~~i~~lp 1340 (1490)
T TIGR01271 1294 FGVIPQKVFIFSGTFRKNLDPYE--QWS-------DEEIWKVAEEVGLKSVIEQFP 1340 (1490)
T ss_pred eEEEeCCCccCccCHHHHhCccc--CCC-------HHHHHHHHHHCCCHHHHHhCc
Confidence 78888887766 45666664321 111 233445555555555444444
No 416
>PLN03073 ABC transporter F family; Provisional
Probab=98.97 E-value=5.3e-10 Score=114.72 Aligned_cols=57 Identities=12% Similarity=0.048 Sum_probs=43.7
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcC---CCCCceeee
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGEL---DNGRGHARQ 236 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l---~~~~G~i~~ 236 (320)
.+++++++ ..|+....+++++|. |++++|+|||||||||||++|+ |.. .|.+|+|..
T Consensus 177 ~I~i~nls----~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~-g~~~~g~p~~g~I~~ 239 (718)
T PLN03073 177 DIHMENFS----ISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMA-MHAIDGIPKNCQILH 239 (718)
T ss_pred eEEEceEE----EEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHc-CCCCCCCCCCCEEEE
Confidence 44555443 444445578888776 9999999999999999999999 864 577888864
No 417
>KOG0059|consensus
Probab=98.96 E-value=4.7e-10 Score=117.88 Aligned_cols=116 Identities=19% Similarity=0.146 Sum_probs=79.3
Q ss_pred ccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-------hhhhcCcceeeeccccCCccc
Q psy15138 194 RVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-------HEMESGRTSSVGNDILGFDSV 263 (320)
Q Consensus 194 ~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-------~~~~~g~v~~~~~~~~~~~~~ 263 (320)
+++..++. ||+.+++|||||||||++++|+ |..+|++|++.+.+.+.. ....+|+-+|.-.-...++..
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mlt-G~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~r 658 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLT-GETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGR 658 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHh-CCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHH
Confidence 66666654 9999999999999999999999 999999999999755421 112245555542222223333
Q ss_pred cceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCCC
Q psy15138 264 GNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPD 313 (320)
Q Consensus 264 ~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~ 313 (320)
+....++...++++.++.+.++ ..++.+|+.++.++....+||+...
T Consensus 659 EhL~~~arlrG~~~~di~~~v~---~ll~~~~L~~~~~~~~~~ySgG~kR 705 (885)
T KOG0059|consen 659 EHLEFYARLRGLPRSDIGSAIE---KLLRLVGLGPYANKQVRTYSGGNKR 705 (885)
T ss_pred HHHHHHHHHcCCChhHHHHHHH---HHHHHcCChhhhccchhhCCCcchh
Confidence 4444455556666666655544 4555666688889999999997654
No 418
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.96 E-value=3.6e-09 Score=88.60 Aligned_cols=58 Identities=17% Similarity=0.122 Sum_probs=37.6
Q ss_pred CCccchhhhccceecCCCCchhHHHHHHHHHH--cCCCcEEEEeCCCCCChhHHHHHHHHHH
Q psy15138 33 ASPADHSMLQSKVGANAGIVGMTKEHLGLALA--LSVPVFVVVTKIDMCPPNVLQDTLKLLV 92 (320)
Q Consensus 33 ~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~--l~i~~~v~lnk~Dl~~~~~le~~l~~~~ 92 (320)
...+|.+++ |+++..+..+..++-....+. .+.|+++|+||+|+.+.+.++.++..+.
T Consensus 6 l~~aD~il~--VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~ 65 (157)
T cd01858 6 IDSSDVVIQ--VLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILS 65 (157)
T ss_pred hhhCCEEEE--EEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHh
Confidence 456787777 999998765543322233333 2379999999999987665544444443
No 419
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.95 E-value=6.4e-10 Score=113.25 Aligned_cols=58 Identities=26% Similarity=0.312 Sum_probs=47.2
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK 237 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~ 237 (320)
++++.++++. |+...++++++|. |++++|+|||||||||||++|+ |+++|++|+|.+.
T Consensus 3 ~l~i~~ls~~----~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriia-G~~~p~~G~I~~~ 63 (635)
T PRK11147 3 LISIHGAWLS----FSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILN-GEVLLDDGRIIYE 63 (635)
T ss_pred EEEEeeEEEE----eCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHc-CCCCCCCeEEEeC
Confidence 3555555443 4445677777775 9999999999999999999999 9999999999875
No 420
>KOG0461|consensus
Probab=98.95 E-value=2e-09 Score=98.49 Aligned_cols=112 Identities=21% Similarity=0.240 Sum_probs=87.6
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCCh----hHHHHHH
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPP----NVLQDTL 88 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~----~~le~~l 88 (320)
.+++||+|||.-++ -+.|+.-+|..++ ||++..|+..||-|||.|+..+--..+|++||+|..++ ..+++..
T Consensus 71 q~tlvDCPGHasLIRtiiggaqiiDlm~l--viDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~ 148 (522)
T KOG0461|consen 71 QFTLVDCPGHASLIRTIIGGAQIIDLMIL--VIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSA 148 (522)
T ss_pred eeEEEeCCCcHHHHHHHHhhhheeeeeeE--EEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHH
Confidence 36899999999999 7888999999999 99999999999999999999887789999999998765 5677777
Q ss_pred HHHHHhhcCCCccc-cCccccccCCch---hHHHHHHHHHHHHH
Q psy15138 89 KLLVRILKSPGCRK-VPVMNCLISPTE---EQFDLLQKKIKSLI 128 (320)
Q Consensus 89 ~~~~~~l~~~~~~~-i~~kl~~~~gny---d~~~~l~~q~~~~~ 128 (320)
..++++|.+..+.. .|.-.......| +.+.+|++.+..+.
T Consensus 149 kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 149 KKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred HHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 88888888766653 343322222223 33666777766653
No 421
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.94 E-value=1.1e-09 Score=114.54 Aligned_cols=78 Identities=17% Similarity=0.161 Sum_probs=69.6
Q ss_pred CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC------h---
Q psy15138 13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP------P--- 81 (320)
Q Consensus 13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~------~--- 81 (320)
+..+.+||+|||.+|. +..+...+|.+++ ||+|.+|+..||++++..|...++|.++++||+|... .
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ail--Vvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~~~~ 174 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALV--VVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 174 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEE--EEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCHHHH
Confidence 3458999999999999 8999999999999 9999999999999999999999999999999999872 2
Q ss_pred -hHHHHHHHHHH
Q psy15138 82 -NVLQDTLKLLV 92 (320)
Q Consensus 82 -~~le~~l~~~~ 92 (320)
..++..+++++
T Consensus 175 ~~~~~~vi~~in 186 (843)
T PLN00116 175 YQTFSRVIENAN 186 (843)
T ss_pred HHHHHHHHHHHH
Confidence 46677777776
No 422
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.94 E-value=1.6e-09 Score=95.02 Aligned_cols=82 Identities=24% Similarity=0.312 Sum_probs=66.1
Q ss_pred CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCC--hhHHHHH
Q psy15138 13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCP--PNVLQDT 87 (320)
Q Consensus 13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~--~~~le~~ 87 (320)
+..+.++|+|||++|. ++.+...+|.+++ |+++.+|+..+++++..+++..++| +++++||+|+.. .+.++..
T Consensus 76 ~~~~~liDTpG~~~~~~~~~~~~~~ad~~ll--VvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i 153 (208)
T cd04166 76 KRKFIIADTPGHEQYTRNMVTGASTADLAIL--LVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEI 153 (208)
T ss_pred CceEEEEECCcHHHHHHHHHHhhhhCCEEEE--EEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHH
Confidence 4468899999999997 7777889999988 9999999999999999999999986 566899999964 3445555
Q ss_pred HHHHHHhhc
Q psy15138 88 LKLLVRILK 96 (320)
Q Consensus 88 l~~~~~~l~ 96 (320)
..++...+.
T Consensus 154 ~~~~~~~~~ 162 (208)
T cd04166 154 VADYLAFAA 162 (208)
T ss_pred HHHHHHHHH
Confidence 555555443
No 423
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.93 E-value=8.4e-10 Score=121.93 Aligned_cols=122 Identities=20% Similarity=0.222 Sum_probs=72.9
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCccee
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSS 252 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~ 252 (320)
++++++++.|... ....++++++. |++++|+||||||||||+++|+ |+++|.+|++.+++ .++.
T Consensus 637 i~~~~~~~~~~~~--~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~-g~~~~~~G~i~~~g----------~i~y 703 (1522)
T TIGR00957 637 ITVHNATFTWARD--LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALL-AEMDKVEGHVHMKG----------SVAY 703 (1522)
T ss_pred EEEEEeEEEcCCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCccCCcEEEECC----------EEEE
Confidence 4455544444211 12466777765 9999999999999999999999 99999999998753 3445
Q ss_pred eeccccCC-ccccceeecCCCCCCCHHhHHHH--HHHHHHHhccc--CCccccccccccccCCCC
Q psy15138 253 VGNDILGF-DSVGNVVNKPEHGSLDWVKICER--SAKVITFIDLA--GHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 253 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~--~~~~l~~l~l~--gl~~~~~~~~~~LSG~~~ 312 (320)
++|+.+.+ .+..+++..+.. .......+. ...+.+.++.. |...........|||++.
T Consensus 704 v~Q~~~l~~~Ti~eNI~~g~~--~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQk 766 (1522)
T TIGR00957 704 VPQQAWIQNDSLRENILFGKA--LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQK 766 (1522)
T ss_pred EcCCccccCCcHHHHhhcCCc--cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHH
Confidence 55554433 456666665432 111111111 11111222222 222345667788999754
No 424
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.91 E-value=3.6e-09 Score=91.48 Aligned_cols=112 Identities=21% Similarity=0.207 Sum_probs=79.7
Q ss_pred CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHH
Q psy15138 13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKL 90 (320)
Q Consensus 13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~ 90 (320)
...+.++|+|||.+|. +..++..+|.+++ |+++.+|...++.+++.++...++|+++++||+|+...++.+..+++
T Consensus 67 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~--VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~ 144 (192)
T cd01889 67 NLQITLVDCPGHASLIRTIIGGAQIIDLMLL--VVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEK 144 (192)
T ss_pred CceEEEEECCCcHHHHHHHHHHHhhCCEEEE--EEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHH
Confidence 4568999999999988 5566778899888 99999999999999998888889999999999999876666555555
Q ss_pred HHHhhc----CCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138 91 LVRILK----SPGCRKVPVMNCLISPTEEQFDLLQKKIKSL 127 (320)
Q Consensus 91 ~~~~l~----~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~ 127 (320)
+.+.+. ......++. +..+..+.+.+++++..+..+
T Consensus 145 ~~~~l~~~~~~~~~~~~~v-i~iSa~~g~gi~~L~~~l~~~ 184 (192)
T cd01889 145 MKKKLQKTLEKTRFKNSPI-IPVSAKPGGGEAELGKDLNNL 184 (192)
T ss_pred HHHHHHHHHHhcCcCCCCE-EEEeccCCCCHHHHHHHHHhc
Confidence 554322 111222221 113346666677666655443
No 425
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.90 E-value=1.6e-09 Score=90.67 Aligned_cols=46 Identities=28% Similarity=0.294 Sum_probs=39.9
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF 239 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~ 239 (320)
.++++.++. |++++|+||||||||||+++|+ |.++|.+|++.+++.
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~-g~~~~~~G~i~~~~~ 61 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIA-GLLKPTSGEILIDGK 61 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCccEEEECCE
Confidence 455555554 9999999999999999999999 999999999998754
No 426
>PLN03130 ABC transporter C family member; Provisional
Probab=98.90 E-value=1.1e-09 Score=121.34 Aligned_cols=85 Identities=18% Similarity=0.175 Sum_probs=63.6
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCC-ceeeeccccchhhhhcCcc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGR-GHARQKLFRHKHEMESGRT 250 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~-G~i~~~~~~~~~~~~~g~v 250 (320)
.++++++++.|... .....++++++. |+.++|+||||||||||+++|. |+++|.+ |+|.+ .+.+
T Consensus 614 ~I~~~nvsf~y~~~-~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLl-G~~~~~~GG~I~l----------~~~I 681 (1622)
T PLN03130 614 AISIKNGYFSWDSK-AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAML-GELPPRSDASVVI----------RGTV 681 (1622)
T ss_pred ceEEEeeEEEccCC-CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHH-HhhccCCCceEEE----------cCeE
Confidence 35666666665421 113456777765 9999999999999999999999 9999999 89875 3566
Q ss_pred eeeeccccCC-ccccceeecCC
Q psy15138 251 SSVGNDILGF-DSVGNVVNKPE 271 (320)
Q Consensus 251 ~~~~~~~~~~-~~~~~~v~~~~ 271 (320)
+.++|+.+.| .+..+|+.++.
T Consensus 682 ayv~Q~p~LfngTIreNI~fg~ 703 (1622)
T PLN03130 682 AYVPQVSWIFNATVRDNILFGS 703 (1622)
T ss_pred EEEcCccccCCCCHHHHHhCCC
Confidence 7777777665 56777777653
No 427
>PTZ00243 ABC transporter; Provisional
Probab=98.89 E-value=1.1e-09 Score=120.91 Aligned_cols=108 Identities=15% Similarity=0.156 Sum_probs=67.0
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCC-cccccee
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGF-DSVGNVV 267 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~-~~~~~~v 267 (320)
..+++++++. |+.++|+|||||||||||++|+ |+++|++|+|.+. +.++.++|+...+ .+..+++
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~-G~~~~~~G~i~~~----------~~i~yv~Q~~~l~~~Tv~enI 741 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLL-SQFEISEGRVWAE----------RSIAYVPQQAWIMNATVRGNI 741 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHh-cCCCCCCcEEEEC----------CeEEEEeCCCccCCCcHHHHH
Confidence 3456676665 9999999999999999999999 9999999999763 2334444443333 3555555
Q ss_pred ecCCCCCCCHHhHHHH--HHHHHHHhccc--CCccccccccccccCCCC
Q psy15138 268 NKPEHGSLDWVKICER--SAKVITFIDLA--GHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 268 ~~~~~~~~~~~~~~~~--~~~~l~~l~l~--gl~~~~~~~~~~LSG~~~ 312 (320)
..+.. .......+. ...+.+.++.+ |+....+.....|||++.
T Consensus 742 ~~~~~--~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQk 788 (1560)
T PTZ00243 742 LFFDE--EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQK 788 (1560)
T ss_pred HcCCh--hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHH
Confidence 54321 111111111 11222233333 555566778899999653
No 428
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.89 E-value=9.1e-09 Score=99.93 Aligned_cols=66 Identities=20% Similarity=0.122 Sum_probs=52.9
Q ss_pred ceEEEeCCCcc--------hhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChh
Q psy15138 15 AASVFETRIHE--------RDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPN 82 (320)
Q Consensus 15 ~~~~~d~pgh~--------~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~ 82 (320)
.+.++|+||+. .+. .......+|.+++ |+++.+|......+....++..+.|.++|+||+|+...+
T Consensus 48 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~--vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~ 123 (429)
T TIGR03594 48 EFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILF--VVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKED 123 (429)
T ss_pred EEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEE--EEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccc
Confidence 47789999983 333 2334567888877 999999999988888888888899999999999987543
No 429
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.88 E-value=1.7e-09 Score=119.15 Aligned_cols=67 Identities=22% Similarity=0.281 Sum_probs=51.6
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCC-ccccceee
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGF-DSVGNVVN 268 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~-~~~~~~v~ 268 (320)
.+++++++. |+.++|+|||||||||||++|+ |+++|.+|+|.+++ .++.++|+.+.| .++.+++.
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~-G~~~~~~G~i~~~g----------~iayv~Q~~~l~~~Ti~eNI~ 508 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIM-GELEPSEGKIKHSG----------RISFSPQTSWIMPGTIKDNII 508 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECC----------EEEEEeCCCccCCccHHHHHH
Confidence 356777765 9999999999999999999999 99999999998753 345555554444 35666665
Q ss_pred cC
Q psy15138 269 KP 270 (320)
Q Consensus 269 ~~ 270 (320)
++
T Consensus 509 ~g 510 (1490)
T TIGR01271 509 FG 510 (1490)
T ss_pred hc
Confidence 54
No 430
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.88 E-value=1.3e-09 Score=111.05 Aligned_cols=65 Identities=26% Similarity=0.325 Sum_probs=60.1
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP 80 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~ 80 (320)
..+.|+|+|||++|. +..++..+|.+++ ||++++|++++|++++..++..++|.++++||+|+..
T Consensus 295 ~kItfiDTPGhe~F~~mr~rg~~~aDiaIL--VVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~ 361 (742)
T CHL00189 295 QKIVFLDTPGHEAFSSMRSRGANVTDIAIL--IIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKAN 361 (742)
T ss_pred eEEEEEECCcHHHHHHHHHHHHHHCCEEEE--EEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccc
Confidence 568999999999999 5568899999988 9999999999999999999999999999999999965
No 431
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.86 E-value=1e-08 Score=99.88 Aligned_cols=65 Identities=22% Similarity=0.168 Sum_probs=51.3
Q ss_pred CceEEEeCCCcch----hh------ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138 14 NAASVFETRIHER----DD------DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP 80 (320)
Q Consensus 14 ~~~~~~d~pgh~~----~~------~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~ 80 (320)
..+.++|+||+++ +. .......+|.+++ |+++.++......+....++..+.|+++++||+|+..
T Consensus 49 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~--vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~ 123 (435)
T PRK00093 49 REFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILF--VVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPD 123 (435)
T ss_pred cEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEE--EEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCcc
Confidence 3478999999998 32 1223567888877 9999999888777777778888999999999999764
No 432
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.86 E-value=8.2e-09 Score=103.69 Aligned_cols=62 Identities=26% Similarity=0.229 Sum_probs=57.7
Q ss_pred eEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC
Q psy15138 16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC 79 (320)
Q Consensus 16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~ 79 (320)
+.|+|+|||++|. +..+...+|.+++ |+++++|++++|++++.+++..++|.++++||+|+.
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~Il--VvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAIL--VVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEE--EEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence 7899999999999 5667888999988 999999999999999999999999999999999985
No 433
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.86 E-value=4.4e-09 Score=99.63 Aligned_cols=79 Identities=25% Similarity=0.237 Sum_probs=60.7
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC--ChhHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC--PPNVLQDTLK 89 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~--~~~~le~~l~ 89 (320)
..|-|+|+|||.+|= -=-.-+..|-++| +|+|.+|+|||||==+.=|.++++++|||+||+|.. .++|. ..
T Consensus 68 ~~INIvDTPGHADFGGEVERvl~MVDgvlL--lVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~V---vd 142 (603)
T COG1217 68 TRINIVDTPGHADFGGEVERVLSMVDGVLL--LVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEV---VD 142 (603)
T ss_pred eEEEEecCCCcCCccchhhhhhhhcceEEE--EEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHH---HH
Confidence 568999999999997 1111244567888 999999999999977788888899999999999985 45554 45
Q ss_pred HHHHhhcC
Q psy15138 90 LLVRILKS 97 (320)
Q Consensus 90 ~~~~~l~~ 97 (320)
++..++..
T Consensus 143 ~vfDLf~~ 150 (603)
T COG1217 143 EVFDLFVE 150 (603)
T ss_pred HHHHHHHH
Confidence 55555543
No 434
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2.7e-09 Score=100.24 Aligned_cols=121 Identities=18% Similarity=0.195 Sum_probs=78.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCce----------------eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEE
Q psy15138 148 NGLKPDEYEASVATLQSLATTLEADC----------------VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVV 208 (320)
Q Consensus 148 ~~l~~~~~~~~~~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~iv 208 (320)
.|....++..++-+.++|-+...... ..+.+.++.+.|... ++++++++|. |+.++++
T Consensus 219 lg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~---r~iL~~isf~i~~g~tvAiV 295 (497)
T COG5265 219 LGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPR---RPILNGISFTIPLGKTVAIV 295 (497)
T ss_pred hHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEEEEEeecccc---chhhcCccccccCccEEEEE
Confidence 45556677777777776665432211 123455555555443 4556666665 9999999
Q ss_pred cCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCcceeeeccccCC-ccccceeecCCC
Q psy15138 209 GNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGRTSSVGNDILGF-DSVGNVVNKPEH 272 (320)
Q Consensus 209 GpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~v~~~~~~~~~~-~~~~~~v~~~~~ 272 (320)
||||+||||++++|- +++++.+|.|.+++.+. .....+..++.++|+...| ++...++.++..
T Consensus 296 g~SG~gKsTI~rllf-RFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~ 362 (497)
T COG5265 296 GESGAGKSTILRLLF-RFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP 362 (497)
T ss_pred eCCCCcHHHHHHHHH-HHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCc
Confidence 999999999999999 99999999999986552 2222334445555555444 555566655543
No 435
>KOG1144|consensus
Probab=98.83 E-value=4.7e-08 Score=96.97 Aligned_cols=62 Identities=27% Similarity=0.252 Sum_probs=59.6
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDM 78 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl 78 (320)
++.+||+||||.|- +--|++..|+++| ||+...|+.+||.|.+.++|.-..|+||+|||+|.
T Consensus 541 g~lvIdtpghEsFtnlRsrgsslC~~aIl--vvdImhGlepqtiESi~lLR~rktpFivALNKiDR 604 (1064)
T KOG1144|consen 541 GLLVIDTPGHESFTNLRSRGSSLCDLAIL--VVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDR 604 (1064)
T ss_pred eeEEecCCCchhhhhhhhccccccceEEE--EeehhccCCcchhHHHHHHHhcCCCeEEeehhhhh
Confidence 58899999999999 8899999999999 99999999999999999999999999999999994
No 436
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.83 E-value=4.9e-09 Score=93.94 Aligned_cols=82 Identities=22% Similarity=0.242 Sum_probs=70.3
Q ss_pred CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHH
Q psy15138 13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKL 90 (320)
Q Consensus 13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~ 90 (320)
...+.++|+|||.+|. +..+...+|.+++ |+++.+|+..+++++...++..++|.++++||+|+.... .+..+++
T Consensus 63 ~~~i~liDTPG~~~f~~~~~~~l~~aD~~Il--Vvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~-~~~~~~~ 139 (237)
T cd04168 63 DTKVNLIDTPGHMDFIAEVERSLSVLDGAIL--VISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGAD-LEKVYQE 139 (237)
T ss_pred CEEEEEEeCCCccchHHHHHHHHHHhCeEEE--EEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCC-HHHHHHH
Confidence 3468899999999998 5666788899988 999999999999999999999999999999999998654 4778888
Q ss_pred HHHhhcC
Q psy15138 91 LVRILKS 97 (320)
Q Consensus 91 ~~~~l~~ 97 (320)
++..+..
T Consensus 140 i~~~~~~ 146 (237)
T cd04168 140 IKEKLSS 146 (237)
T ss_pred HHHHHCC
Confidence 8887654
No 437
>PLN03232 ABC transporter C family member; Provisional
Probab=98.82 E-value=3.7e-09 Score=116.68 Aligned_cols=86 Identities=16% Similarity=0.173 Sum_probs=62.8
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcce
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTS 251 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~ 251 (320)
.++++++++.|... ....+++++++. |+.++|+||||||||||+++|. |+++|.+|.+.. ..+.++
T Consensus 614 ~I~~~~vsF~y~~~-~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLl-G~~~~~~G~i~~---------~~~~Ia 682 (1495)
T PLN03232 614 AISIKNGYFSWDSK-TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAML-GELSHAETSSVV---------IRGSVA 682 (1495)
T ss_pred cEEEEeeEEEcCCC-CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh-CCCcccCCCEEE---------ecCcEE
Confidence 35666666655421 113457777765 9999999999999999999999 999999987642 145677
Q ss_pred eeeccccCC-ccccceeecCC
Q psy15138 252 SVGNDILGF-DSVGNVVNKPE 271 (320)
Q Consensus 252 ~~~~~~~~~-~~~~~~v~~~~ 271 (320)
.++|+.+.| .+..+|+.++.
T Consensus 683 yv~Q~p~Lf~gTIreNI~fg~ 703 (1495)
T PLN03232 683 YVPQVSWIFNATVRENILFGS 703 (1495)
T ss_pred EEcCccccccccHHHHhhcCC
Confidence 777777766 56777777653
No 438
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.82 E-value=1.7e-08 Score=84.30 Aligned_cols=53 Identities=21% Similarity=0.207 Sum_probs=34.9
Q ss_pred chhhhccceecCCCCchhHHHHH-HHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138 37 DHSMLQSKVGANAGIVGMTKEHL-GLALALSVPVFVVVTKIDMCPPNVLQDTLKLL 91 (320)
Q Consensus 37 d~~~l~~vv~a~~g~~~~t~~~l-~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~ 91 (320)
|.+++ |+++.++.......-. ..++..+.|.++|+||+|+.+.+.+++.+..+
T Consensus 1 Dvvl~--VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~ 54 (155)
T cd01849 1 DVILE--VLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYL 54 (155)
T ss_pred CEEEE--EEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHH
Confidence 45555 9999887655433222 35566778999999999998765444443333
No 439
>PRK00007 elongation factor G; Reviewed
Probab=98.81 E-value=4.3e-09 Score=108.04 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=70.1
Q ss_pred CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHH
Q psy15138 13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKL 90 (320)
Q Consensus 13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~ 90 (320)
+..+.+||+|||.+|. +..+...+|.+++ ||+|.+|+.+||++++..++.+++|.++++||+|+.... +...+++
T Consensus 74 ~~~~~liDTPG~~~f~~ev~~al~~~D~~vl--Vvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~-~~~~~~~ 150 (693)
T PRK00007 74 DHRINIIDTPGHVDFTIEVERSLRVLDGAVA--VFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGAD-FYRVVEQ 150 (693)
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEE--EEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHH
Confidence 4568999999999998 7777888999988 999999999999999999999999999999999998644 4556677
Q ss_pred HHHhhc
Q psy15138 91 LVRILK 96 (320)
Q Consensus 91 ~~~~l~ 96 (320)
+++.+.
T Consensus 151 i~~~l~ 156 (693)
T PRK00007 151 IKDRLG 156 (693)
T ss_pred HHHHhC
Confidence 766554
No 440
>PRK10218 GTP-binding protein; Provisional
Probab=98.75 E-value=8.1e-09 Score=103.84 Aligned_cols=80 Identities=19% Similarity=0.090 Sum_probs=67.2
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL 91 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~ 91 (320)
..+.++|+|||++|. +......+|.+++ |+++.+|++++|+.++..+..+++|.++++||+|+.. ...+..++++
T Consensus 68 ~~inliDTPG~~df~~~v~~~l~~aDg~IL--VVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~-a~~~~vl~ei 144 (607)
T PRK10218 68 YRINIVDTPGHADFGGEVERVMSMVDSVLL--VVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPG-ARPDWVVDQV 144 (607)
T ss_pred EEEEEEECCCcchhHHHHHHHHHhCCEEEE--EEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCC-CchhHHHHHH
Confidence 457899999999999 5666788999988 9999999999999999999999999999999999864 3345556666
Q ss_pred HHhhc
Q psy15138 92 VRILK 96 (320)
Q Consensus 92 ~~~l~ 96 (320)
...+.
T Consensus 145 ~~l~~ 149 (607)
T PRK10218 145 FDLFV 149 (607)
T ss_pred HHHHh
Confidence 66553
No 441
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.75 E-value=4.2e-08 Score=96.57 Aligned_cols=64 Identities=19% Similarity=0.134 Sum_probs=47.9
Q ss_pred ceEEEeCCCcch--------hh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHER--------DD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~--------~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+||++. |. .......+|.+++ |++++.+......+-...++..+.|+++|+||+|+..
T Consensus 87 ~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~--VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 87 RFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLF--VVDATVGATATDEAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred EEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEE--EEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCc
Confidence 467889999873 22 1222456788877 9999998876655566677777889999999999864
No 442
>PTZ00416 elongation factor 2; Provisional
Probab=98.73 E-value=1e-08 Score=107.12 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=70.0
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC----------h
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP----------P 81 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~----------~ 81 (320)
..+.|+|+|||.+|. +..+...+|.+++ ||++.+|+.+||++++..+...++|.++++||+|+.- -
T Consensus 92 ~~i~liDtPG~~~f~~~~~~al~~~D~ail--Vvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~ 169 (836)
T PTZ00416 92 FLINLIDSPGHVDFSSEVTAALRVTDGALV--VVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIY 169 (836)
T ss_pred eEEEEEcCCCHHhHHHHHHHHHhcCCeEEE--EEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHH
Confidence 358999999999999 8888899999999 9999999999999999999999999999999999861 1
Q ss_pred hHHHHHHHHHHHhhc
Q psy15138 82 NVLQDTLKLLVRILK 96 (320)
Q Consensus 82 ~~le~~l~~~~~~l~ 96 (320)
..+...+++++..+.
T Consensus 170 ~~~~~ii~~in~~l~ 184 (836)
T PTZ00416 170 QNFVKTIENVNVIIA 184 (836)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456677777776543
No 443
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.70 E-value=2.8e-08 Score=104.60 Aligned_cols=65 Identities=28% Similarity=0.293 Sum_probs=59.4
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP 80 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~ 80 (320)
.++.|+|+|||++|. +..+...+|.+++ |+++++|++++|.+++.+++..++|.++++||+|+..
T Consensus 526 p~i~fiDTPGhe~F~~lr~~g~~~aDivlL--VVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 526 PGLLFIDTPGHEAFTSLRKRGGSLADLAVL--VVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIP 592 (1049)
T ss_pred CcEEEEECCCcHHHHHHHHhhcccCCEEEE--EEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCcc
Confidence 358999999999998 6667788999988 9999999999999999999999999999999999863
No 444
>KOG0462|consensus
Probab=98.70 E-value=2.5e-08 Score=96.17 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=63.3
Q ss_pred CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC--ChhHHHHH
Q psy15138 12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC--PPNVLQDT 87 (320)
Q Consensus 12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~--~~~~le~~ 87 (320)
..+-+-+||+|||-+|- ---..+..|-++| ||+|.+|++.||.--+.+|.-.++.+|.||||+|+. +++. +
T Consensus 123 ~~ylLNLIDTPGHvDFs~EVsRslaac~G~lL--vVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~---V 197 (650)
T KOG0462|consen 123 QSYLLNLIDTPGHVDFSGEVSRSLAACDGALL--VVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPER---V 197 (650)
T ss_pred CceEEEeecCCCcccccceehehhhhcCceEE--EEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHH---H
Confidence 34568899999999999 2222556677888 999999999999999999999999999999999995 4545 4
Q ss_pred HHHHHHhh
Q psy15138 88 LKLLVRIL 95 (320)
Q Consensus 88 l~~~~~~l 95 (320)
+.++...+
T Consensus 198 ~~q~~~lF 205 (650)
T KOG0462|consen 198 ENQLFELF 205 (650)
T ss_pred HHHHHHHh
Confidence 45555543
No 445
>KOG0054|consensus
Probab=98.68 E-value=2.3e-08 Score=107.05 Aligned_cols=107 Identities=16% Similarity=0.148 Sum_probs=75.1
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcCcceeeeccccCC-cccc
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESGRTSSVGNDILGF-DSVG 264 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g~v~~~~~~~~~~-~~~~ 264 (320)
..+++++++. ||+|||||..|||||||+..|- ++.+|.+|+|.+++.+. .....+.+++-.+|++..| .+..
T Consensus 1153 p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLF-Rl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR 1231 (1381)
T KOG0054|consen 1153 PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALF-RLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVR 1231 (1381)
T ss_pred cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHH-HhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccc
Confidence 4567777775 9999999999999999999999 99999999999986551 1122356677778877766 3455
Q ss_pred ceeecCCCCCCCHHhHHHHHHHHHHHhcccCCcccccccccccc
Q psy15138 265 NVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMT 308 (320)
Q Consensus 265 ~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LS 308 (320)
.|+++... . .-+++.+.++.+++++...+.|.+|-
T Consensus 1232 ~NLDPf~e--~-------sD~~IW~ALe~~~Lk~~v~~~p~~Ld 1266 (1381)
T KOG0054|consen 1232 FNLDPFDE--Y-------SDDEIWEALERCQLKDVVSSLPGGLD 1266 (1381)
T ss_pred cccCcccc--c-------CHHHHHHHHHHhChHHHHhhCCcCCC
Confidence 55544221 1 12445566666766666666665553
No 446
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.68 E-value=1.7e-08 Score=104.24 Aligned_cols=65 Identities=22% Similarity=0.192 Sum_probs=59.2
Q ss_pred CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC
Q psy15138 13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC 79 (320)
Q Consensus 13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~ 79 (320)
...+.|||+|||.+|. +..+...+|.+++ ||++.+|+.++|+.++..+...++|+++++||+|+.
T Consensus 86 ~~~i~liDtPG~~df~~~~~~~l~~~D~avl--Vvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 86 EYLINLIDTPGHVDFGGDVTRAMRAVDGAIV--VVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred cEEEEEEcCCCccChHHHHHHHHHhcCEEEE--EEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhh
Confidence 4558999999999998 7777888899999 999999999999999999999999999999999975
No 447
>PRK12739 elongation factor G; Reviewed
Probab=98.68 E-value=1.7e-08 Score=103.74 Aligned_cols=81 Identities=16% Similarity=0.113 Sum_probs=69.2
Q ss_pred CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHH
Q psy15138 13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKL 90 (320)
Q Consensus 13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~ 90 (320)
...+.|+|+|||.+|. +..+...+|.+++ ||++.+|+.++|++++..++..++|.++++||+|+...+ ++..+++
T Consensus 72 ~~~i~liDTPG~~~f~~e~~~al~~~D~~il--VvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~-~~~~~~~ 148 (691)
T PRK12739 72 GHRINIIDTPGHVDFTIEVERSLRVLDGAVA--VFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGAD-FFRSVEQ 148 (691)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEE--EEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHH
Confidence 4568899999999998 6667888899988 999999999999999999999999999999999998643 5566677
Q ss_pred HHHhhc
Q psy15138 91 LVRILK 96 (320)
Q Consensus 91 ~~~~l~ 96 (320)
++..+.
T Consensus 149 i~~~l~ 154 (691)
T PRK12739 149 IKDRLG 154 (691)
T ss_pred HHHHhC
Confidence 766654
No 448
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.66 E-value=7.4e-09 Score=90.19 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCc
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRG 232 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G 232 (320)
| +++|+||||||||||+++|+ |++++..|
T Consensus 23 g-~~~i~G~nGsGKStll~al~-~l~~~~~~ 51 (197)
T cd03278 23 G-LTAIVGPNGSGKSNIIDAIR-WVLGEQSA 51 (197)
T ss_pred C-cEEEECCCCCCHHHHHHHHH-HHhccccc
Confidence 6 79999999999999999999 99876643
No 449
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=2.3e-08 Score=94.30 Aligned_cols=80 Identities=19% Similarity=0.252 Sum_probs=65.2
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL 91 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~ 91 (320)
..+-++|+|||++|- .---..+.|.++. |++|-.|+.+||+.-+.+|++.++|++-.+||+|....+=+| .|.++
T Consensus 81 ~~iNLLDTPGHeDFSEDTYRtLtAvDsAvM--VIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~E-LLdEi 157 (528)
T COG4108 81 CLVNLLDTPGHEDFSEDTYRTLTAVDSAVM--VIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLE-LLDEI 157 (528)
T ss_pred eEEeccCCCCccccchhHHHHHHhhheeeE--EEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHH-HHHHH
Confidence 458889999999998 1111335677777 999999999999999999999999999999999998666553 56777
Q ss_pred HHhhc
Q psy15138 92 VRILK 96 (320)
Q Consensus 92 ~~~l~ 96 (320)
.+.|.
T Consensus 158 E~~L~ 162 (528)
T COG4108 158 EEELG 162 (528)
T ss_pred HHHhC
Confidence 77665
No 450
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.65 E-value=8.1e-08 Score=78.95 Aligned_cols=48 Identities=10% Similarity=0.056 Sum_probs=34.3
Q ss_pred CccchhhhccceecCCCCchhHHHHHHHHHHc--CCCcEEEEeCCCCCChhH
Q psy15138 34 SPADHSMLQSKVGANAGIVGMTKEHLGLALAL--SVPVFVVVTKIDMCPPNV 83 (320)
Q Consensus 34 ~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l--~i~~~v~lnk~Dl~~~~~ 83 (320)
..+|.+++ |+++..+......+-....... +.|.++++||+|+.+.+.
T Consensus 10 ~~aD~vl~--ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~ 59 (141)
T cd01857 10 ERSDIVVQ--IVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQ 59 (141)
T ss_pred hhCCEEEE--EEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHH
Confidence 45677777 9999988766544444444444 779999999999976543
No 451
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.64 E-value=2.4e-08 Score=100.11 Aligned_cols=64 Identities=28% Similarity=0.298 Sum_probs=58.9
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~ 80 (320)
.+.|+|+|||++|. +..+...+|.+++ |+++++|+++++.+++.+++..++|.++++||+|+.+
T Consensus 70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~Il--VvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKRGGALADLAIL--IVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred cEEEEECCCcHhHHHHHHHHHhhCCEEEE--EEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccc
Confidence 38899999999999 6667889999988 9999999999999999999999999999999999974
No 452
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.63 E-value=4.3e-08 Score=84.86 Aligned_cols=78 Identities=23% Similarity=0.196 Sum_probs=60.4
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHHH
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLV 92 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~~ 92 (320)
.+.++|+|||++|. +.....++|.+++ |+++.+++.+++++.+..+...++|+++++||+|+... ..+..++++.
T Consensus 66 ~~~l~DtpG~~~~~~~~~~~~~~~d~~il--V~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~-~~~~~~~~~~ 142 (194)
T cd01891 66 KINIVDTPGHADFGGEVERVLSMVDGVLL--LVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDA-RPEEVVDEVF 142 (194)
T ss_pred EEEEEECCCcHHHHHHHHHHHHhcCEEEE--EEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCC-CHHHHHHHHH
Confidence 47789999999998 4455678899888 99999998888888777777788999999999999642 2333444444
Q ss_pred Hhh
Q psy15138 93 RIL 95 (320)
Q Consensus 93 ~~l 95 (320)
..+
T Consensus 143 ~~~ 145 (194)
T cd01891 143 DLF 145 (194)
T ss_pred HHH
Confidence 443
No 453
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.62 E-value=1.5e-07 Score=97.08 Aligned_cols=65 Identities=20% Similarity=0.179 Sum_probs=50.3
Q ss_pred ceEEEeCCCcch--------hh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCCh
Q psy15138 15 AASVFETRIHER--------DD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPP 81 (320)
Q Consensus 15 ~~~~~d~pgh~~--------~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~ 81 (320)
.+.++|+||.++ |. .......+|.+++ |+++++|+.+...+-...++..+.|+++|+||+|+...
T Consensus 324 ~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~--VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~ 398 (712)
T PRK09518 324 DFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVF--VVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQAS 398 (712)
T ss_pred EEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEE--EEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccc
Confidence 477899999764 22 2233567888877 99999998877766667777788899999999998654
No 454
>KOG0054|consensus
Probab=98.61 E-value=4.5e-08 Score=104.92 Aligned_cols=68 Identities=26% Similarity=0.289 Sum_probs=57.4
Q ss_pred ccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCC-ccccceeec
Q psy15138 194 RVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGF-DSVGNVVNK 269 (320)
Q Consensus 194 ~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~-~~~~~~v~~ 269 (320)
.++++++. |+.+||+||.||||||||..|. |.++..+|.+.++ |.+++++|..+-+ .++.+|+.+
T Consensus 536 tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiL-GEm~~~sG~v~v~----------gsiaYv~Q~pWI~ngTvreNILF 604 (1381)
T KOG0054|consen 536 TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAIL-GEMPKLSGSVAVN----------GSVAYVPQQPWIQNGTVRENILF 604 (1381)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHh-cCcccccceEEEc----------CeEEEeccccHhhCCcHHHhhhc
Confidence 67777765 9999999999999999999999 9999999999885 4477888877765 577888887
Q ss_pred CCC
Q psy15138 270 PEH 272 (320)
Q Consensus 270 ~~~ 272 (320)
+..
T Consensus 605 G~~ 607 (1381)
T KOG0054|consen 605 GSP 607 (1381)
T ss_pred Ccc
Confidence 654
No 455
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.61 E-value=1.2e-08 Score=92.06 Aligned_cols=37 Identities=24% Similarity=0.189 Sum_probs=30.4
Q ss_pred ccCcEEEEEcCCCChHHHHHHHHhcCcCCCC-Cceeeec
Q psy15138 200 FLEIRVAVVGNVDAGKSTLLGVLTHGELDNG-RGHARQK 237 (320)
Q Consensus 200 ~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~-~G~i~~~ 237 (320)
|....++|+||||||||||+++|+ +++.+. .|.++..
T Consensus 23 ~~~~~~~IvG~NGsGKStll~Ai~-~ll~~~~~~~~r~~ 60 (251)
T cd03273 23 FDPQFNAITGLNGSGKSNILDAIC-FVLGITNLSTVRAS 60 (251)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHH-HHhccccccccccc
Confidence 345678999999999999999999 998876 4566654
No 456
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.60 E-value=5.5e-08 Score=85.60 Aligned_cols=64 Identities=20% Similarity=0.209 Sum_probs=56.0
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC 79 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~ 79 (320)
..+.++|+|||++|. +..+...+|.+++ |+++.++...++++++..+...++|.++++||+|++
T Consensus 71 ~~i~iiDtpG~~~f~~~~~~~~~~aD~~ll--VvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 71 YLFNIIDTPGHVNFMDEVAAALRLSDGVVL--VVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred EEEEEEECCCCcchHHHHHHHHHhCCEEEE--EEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 347889999999997 6666778899988 999999998888888888888888999999999986
No 457
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.59 E-value=2.3e-07 Score=77.52 Aligned_cols=66 Identities=32% Similarity=0.323 Sum_probs=56.2
Q ss_pred CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138 13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP 80 (320)
Q Consensus 13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~ 80 (320)
...+.++|+|||++|. .-.+...+|.+++ |++++++..+++.+.+..++..++|+++++||+|+..
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~--v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 116 (168)
T cd01887 49 IPGITFIDTPGHEAFTNMRARGASLTDIAIL--VVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPN 116 (168)
T ss_pred cceEEEEeCCCcHHHHHHHHHHHhhcCEEEE--EEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccc
Confidence 3468899999999988 3334567888877 9999999989999999999999999999999999874
No 458
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.58 E-value=5.6e-08 Score=98.03 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=63.1
Q ss_pred CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHH
Q psy15138 13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKL 90 (320)
Q Consensus 13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~ 90 (320)
+..+.++|+|||++|. +......+|.+++ |+++++|+..+|.+++..+...++|.++++||+|+... ..+...++
T Consensus 73 ~~~lnLiDTPGh~dF~~~v~~sl~~aD~aIL--VVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a-~~~~v~~e 149 (600)
T PRK05433 73 TYILNLIDTPGHVDFSYEVSRSLAACEGALL--VVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAA-DPERVKQE 149 (600)
T ss_pred cEEEEEEECCCcHHHHHHHHHHHHHCCEEEE--EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcc-cHHHHHHH
Confidence 3458899999999998 4455667888888 99999999999999999998889999999999998643 23344455
Q ss_pred HHHh
Q psy15138 91 LVRI 94 (320)
Q Consensus 91 ~~~~ 94 (320)
+...
T Consensus 150 i~~~ 153 (600)
T PRK05433 150 IEDV 153 (600)
T ss_pred HHHH
Confidence 5443
No 459
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.57 E-value=6.3e-08 Score=75.53 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=31.0
Q ss_pred ccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138 194 RVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR 240 (320)
Q Consensus 194 ~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~ 240 (320)
+++++++. |+.++|+||||||||||++++. +|.+.+.+.+
T Consensus 4 aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-------~G~i~~~g~d 46 (107)
T cd00820 4 SLHGVLVDVYGKVGVLITGDSGIGKTELALELI-------KRKHRLVGDD 46 (107)
T ss_pred EEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-------CCeEEEeeEe
Confidence 34444443 8899999999999999999986 6777776443
No 460
>KOG0065|consensus
Probab=98.56 E-value=6.3e-08 Score=102.12 Aligned_cols=120 Identities=22% Similarity=0.218 Sum_probs=70.4
Q ss_pred cceeccccCCc---cCcEEEEEcCCCChHHHHHHHHhcCcCCCC--Cceeeeccccchhh---hhcCcceeeeccccCCc
Q psy15138 190 LLRKRVESQDF---LEIRVAVVGNVDAGKSTLLGVLTHGELDNG--RGHARQKLFRHKHE---MESGRTSSVGNDILGFD 261 (320)
Q Consensus 190 ~~~~~l~~~~~---~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~--~G~i~~~~~~~~~~---~~~g~v~~~~~~~~~~~ 261 (320)
+-++.|++++- .|..+||+|+|||||||||++|+ |...-+ +|+|++++.....+ +..|++.|.--+.. -.
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA-~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~-~~ 879 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLA-GRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSP-EL 879 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHh-cCcccceEEeEEEECCeeCchhhhccccceeecccccCc-cc
Confidence 34566666653 39999999999999999999999 775433 57778876654322 34566665433322 23
Q ss_pred cccceeecCCC----CCCCHHhHHHHHHHHHHHhcccCCcccccccc----ccccCCCCCE
Q psy15138 262 SVGNVVNKPEH----GSLDWVKICERSAKVITFIDLAGHERYLKTTV----FGMTGHVPDF 314 (320)
Q Consensus 262 ~~~~~v~~~~~----~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~----~~LSG~~~~~ 314 (320)
++.+.+.+... ...+..+..+.++++++++++ +++.+..+ .|||..+.-.
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL---~~~~daiVG~~G~GLs~eQRKr 937 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLEL---KEYADALVGLPGSGLSTEQRKR 937 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCc---hhhhhhhccCCCCCCCHHHhce
Confidence 44444443322 223334433445566665555 54444433 4587755433
No 461
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.56 E-value=8.4e-08 Score=87.47 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=64.2
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL 91 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~ 91 (320)
..+.++|+|||++|. +..+...+|.+++ |+++..|+..++.+.+..+...++|.++++||+|+.... ....++++
T Consensus 71 ~~i~liDTPG~~df~~~~~~~l~~aD~~Il--Vvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~-~~~~~~~l 147 (267)
T cd04169 71 CVINLLDTPGHEDFSEDTYRTLTAVDSAVM--VIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRD-PLELLDEI 147 (267)
T ss_pred EEEEEEECCCchHHHHHHHHHHHHCCEEEE--EEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCC-HHHHHHHH
Confidence 458899999999998 4555677899988 999999999999988899988999999999999986542 33445666
Q ss_pred HHhhc
Q psy15138 92 VRILK 96 (320)
Q Consensus 92 ~~~l~ 96 (320)
+..+.
T Consensus 148 ~~~l~ 152 (267)
T cd04169 148 EEELG 152 (267)
T ss_pred HHHHC
Confidence 66543
No 462
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.56 E-value=1.8e-07 Score=79.34 Aligned_cols=105 Identities=17% Similarity=0.151 Sum_probs=69.2
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHHH
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLV 92 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~~ 92 (320)
.+.|+|+|||++|. +......+|.+++ |+++.++...++.+++..+...++|.++++||+|+.... .....+++.
T Consensus 68 ~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~--v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~-~~~~~~~~~ 144 (179)
T cd01890 68 LLNLIDTPGHVDFSYEVSRSLAACEGALL--LVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSAD-PERVKQQIE 144 (179)
T ss_pred EEEEEECCCChhhHHHHHHHHHhcCeEEE--EEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC-HHHHHHHHH
Confidence 36789999999998 4444667888888 999999888888888877767788999999999986432 223334444
Q ss_pred HhhcCCCccccCccccccCCchhHHHHHHHHHHH
Q psy15138 93 RILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKS 126 (320)
Q Consensus 93 ~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~ 126 (320)
+.+. +...+ -+.....+.+..+++...+..
T Consensus 145 ~~~~---~~~~~-~~~~Sa~~g~gi~~l~~~l~~ 174 (179)
T cd01890 145 DVLG---LDPSE-AILVSAKTGLGVEDLLEAIVE 174 (179)
T ss_pred HHhC---CCccc-EEEeeccCCCCHHHHHHHHHh
Confidence 4321 11100 112334555666666655543
No 463
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.55 E-value=7.1e-08 Score=97.21 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=62.6
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL 91 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~ 91 (320)
..+.|+|+|||++|. +.....++|.+++ |+++++|+..+|.+++..+...++|.++++||+|+.... .+...+++
T Consensus 70 ~~l~liDTPG~~dF~~~v~~~l~~aD~aIL--VvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~-~~~~~~el 146 (595)
T TIGR01393 70 YVLNLIDTPGHVDFSYEVSRSLAACEGALL--LVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSAD-PERVKKEI 146 (595)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhCCEEEE--EecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccC-HHHHHHHH
Confidence 357899999999998 5556778899988 999999999999999988888899999999999996432 23344455
Q ss_pred HHh
Q psy15138 92 VRI 94 (320)
Q Consensus 92 ~~~ 94 (320)
...
T Consensus 147 ~~~ 149 (595)
T TIGR01393 147 EEV 149 (595)
T ss_pred HHH
Confidence 443
No 464
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.55 E-value=2.9e-07 Score=78.45 Aligned_cols=56 Identities=20% Similarity=0.159 Sum_probs=38.6
Q ss_pred chhhhccceecCCCCchhHHHHHHH--HHHcCCCcEEEEeCCCCCChhHHHHHHHHHHHh
Q psy15138 37 DHSMLQSKVGANAGIVGMTKEHLGL--ALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRI 94 (320)
Q Consensus 37 d~~~l~~vv~a~~g~~~~t~~~l~l--~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~~~~ 94 (320)
|.++. |++|..++.....+-..+ .+..+.|.++|+||+|+++++.+..+++.+.+.
T Consensus 1 DvVl~--VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~ 58 (172)
T cd04178 1 DVILE--VLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRRE 58 (172)
T ss_pred CEEEE--EEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhh
Confidence 44555 999998776544433334 223456899999999999888777776666553
No 465
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.54 E-value=8.4e-08 Score=95.29 Aligned_cols=80 Identities=16% Similarity=0.256 Sum_probs=65.0
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL 91 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~ 91 (320)
..+.++|+|||++|. +......+|.+++ |+++.+|+..++++.+..++..++|.++++||+|+.... ..+.++++
T Consensus 79 ~~inliDTPG~~df~~~~~~~l~~aD~aIl--VvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~-~~~~l~~i 155 (526)
T PRK00741 79 CLINLLDTPGHEDFSEDTYRTLTAVDSALM--VIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGRE-PLELLDEI 155 (526)
T ss_pred EEEEEEECCCchhhHHHHHHHHHHCCEEEE--EEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccC-HHHHHHHH
Confidence 348899999999998 4444667899988 999999999999999999999999999999999986543 33455666
Q ss_pred HHhhc
Q psy15138 92 VRILK 96 (320)
Q Consensus 92 ~~~l~ 96 (320)
+..+.
T Consensus 156 ~~~l~ 160 (526)
T PRK00741 156 EEVLG 160 (526)
T ss_pred HHHhC
Confidence 65554
No 466
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.53 E-value=6.7e-07 Score=74.58 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=33.5
Q ss_pred ccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChh
Q psy15138 35 PADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPN 82 (320)
Q Consensus 35 ~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~ 82 (320)
.+|.+++ |++++++...+..+-...+...+.|.++|+||+|+.+.+
T Consensus 12 ~aD~vl~--V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~ 57 (156)
T cd01859 12 ESDVVLE--VLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKE 57 (156)
T ss_pred hCCEEEE--EeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHH
Confidence 4677777 999988776655443344555678999999999997543
No 467
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.52 E-value=1e-07 Score=98.00 Aligned_cols=81 Identities=16% Similarity=0.122 Sum_probs=67.8
Q ss_pred CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHH
Q psy15138 13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKL 90 (320)
Q Consensus 13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~ 90 (320)
+..+.|+|+|||.+|. +......+|.+++ |+++.+|+..++++++..++..++|.++++||+|+.... ++..+++
T Consensus 74 ~~~i~liDTPG~~~~~~~~~~~l~~~D~~il--Vvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~-~~~~~~~ 150 (689)
T TIGR00484 74 GHRINIIDTPGHVDFTVEVERSLRVLDGAVA--VLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGAN-FLRVVNQ 150 (689)
T ss_pred CeEEEEEECCCCcchhHHHHHHHHHhCEEEE--EEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHH
Confidence 3558899999999998 4555677899988 999999999999999999999999999999999998644 4566677
Q ss_pred HHHhhc
Q psy15138 91 LVRILK 96 (320)
Q Consensus 91 ~~~~l~ 96 (320)
+...+.
T Consensus 151 i~~~l~ 156 (689)
T TIGR00484 151 IKQRLG 156 (689)
T ss_pred HHHHhC
Confidence 766554
No 468
>KOG0052|consensus
Probab=98.51 E-value=3.4e-08 Score=92.21 Aligned_cols=71 Identities=31% Similarity=0.356 Sum_probs=61.1
Q ss_pred CCCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCC-------chhHHHHHHHHHHcCC-CcEEEEeCCCCCC
Q psy15138 11 TAENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGI-------VGMTKEHLGLALALSV-PVFVVVTKIDMCP 80 (320)
Q Consensus 11 ~~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~-------~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~ 80 (320)
|....+.++|+|||.+|+ |+.|.+++|.+++ .|++..|. .+|||||..||--|++ +.++.+||+|...
T Consensus 79 t~k~~i~iid~pgh~d~~k~mitg~sqaD~avl--iva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~ 156 (391)
T KOG0052|consen 79 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVL--IVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 156 (391)
T ss_pred ceeEEEEEecCCCCCceeeeEEeeEeeeceeEE--EEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccC
Confidence 455779999999999999 9999999999999 88884333 3799999999999999 8999999999865
Q ss_pred hhH
Q psy15138 81 PNV 83 (320)
Q Consensus 81 ~~~ 83 (320)
+.+
T Consensus 157 ~~~ 159 (391)
T KOG0052|consen 157 PPY 159 (391)
T ss_pred CCc
Confidence 543
No 469
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.51 E-value=8.1e-07 Score=84.74 Aligned_cols=107 Identities=16% Similarity=0.173 Sum_probs=73.7
Q ss_pred CceEEEeCCCcchhh-ccC-CCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138 14 NAASVFETRIHERDD-DLP-EASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL 91 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~-~~~-~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~ 91 (320)
..+.+||+|||-+|- -.+ ..++..-++| ||+|..|+..||--.+.+|--.++.++-|+||+||.+.+ -+.+.+++
T Consensus 76 Y~lnlIDTPGHVDFsYEVSRSLAACEGalL--vVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Ad-pervk~eI 152 (603)
T COG0481 76 YVLNLIDTPGHVDFSYEVSRSLAACEGALL--VVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAAD-PERVKQEI 152 (603)
T ss_pred EEEEEcCCCCccceEEEehhhHhhCCCcEE--EEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCC-HHHHHHHH
Confidence 458899999999999 222 1334445677 999999999999999999999999999999999996422 23445555
Q ss_pred HHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138 92 VRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL 127 (320)
Q Consensus 92 ~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~ 127 (320)
...+- ..+.. -+..+..+.-..+++.+.+-.+
T Consensus 153 e~~iG-id~~d---av~~SAKtG~gI~~iLe~Iv~~ 184 (603)
T COG0481 153 EDIIG-IDASD---AVLVSAKTGIGIEDVLEAIVEK 184 (603)
T ss_pred HHHhC-CCcch---heeEecccCCCHHHHHHHHHhh
Confidence 55421 11222 2224456666666666666555
No 470
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.51 E-value=3.1e-07 Score=78.16 Aligned_cols=82 Identities=28% Similarity=0.370 Sum_probs=65.1
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL 91 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~ 91 (320)
..+.|+|+|||.+|. .......+|.+++ |+++.++.....++.+..++..+.|+++++||+|+...+.++...+++
T Consensus 62 ~~~~liDtpG~~~~~~~~~~~~~~~d~~i~--v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~ 139 (189)
T cd00881 62 RRVNFIDTPGHEDFSSEVIRGLSVSDGAIL--VVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREI 139 (189)
T ss_pred EEEEEEeCCCcHHHHHHHHHHHHhcCEEEE--EEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHH
Confidence 357889999999987 3333457788777 999999998888888888888788999999999998766666666666
Q ss_pred HHhhcC
Q psy15138 92 VRILKS 97 (320)
Q Consensus 92 ~~~l~~ 97 (320)
...+..
T Consensus 140 ~~~~~~ 145 (189)
T cd00881 140 KELLGL 145 (189)
T ss_pred HHHHcc
Confidence 666554
No 471
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.50 E-value=1.3e-07 Score=86.31 Aligned_cols=80 Identities=18% Similarity=0.173 Sum_probs=67.0
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL 91 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~ 91 (320)
..+.++|+|||.+|. +......+|.+++ |++++.|...++++.+..++..++|.++++||+|+... ..+..++++
T Consensus 64 ~~i~liDtPG~~~f~~~~~~~l~~aD~~i~--Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~-~~~~~~~~l 140 (268)
T cd04170 64 HKINLIDTPGYADFVGETRAALRAADAALV--VVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA-DFDKTLAAL 140 (268)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHCCEEEE--EEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC-CHHHHHHHH
Confidence 467899999999998 5666778899988 99999999999999998899999999999999999765 345666777
Q ss_pred HHhhc
Q psy15138 92 VRILK 96 (320)
Q Consensus 92 ~~~l~ 96 (320)
+..+.
T Consensus 141 ~~~~~ 145 (268)
T cd04170 141 QEAFG 145 (268)
T ss_pred HHHhC
Confidence 66553
No 472
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.49 E-value=3.6e-07 Score=90.67 Aligned_cols=72 Identities=18% Similarity=0.219 Sum_probs=50.7
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccC-Cccccceee
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILG-FDSVGNVVN 268 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~-~~~~~~~v~ 268 (320)
..+++.++. |+++-|.||||||||||+|.|+ |+.|-++|.|..- . -..+...+|.++. ..+..+.+.
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaia-GLWP~g~G~I~~P-----~---~~~~lflpQ~PY~p~GtLre~l~ 477 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALA-GLWPWGSGRISMP-----A---DSALLFLPQRPYLPQGTLREALC 477 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHh-ccCccCCCceecC-----C---CCceEEecCCCCCCCccHHHHHh
Confidence 446666654 9999999999999999999999 9999999998763 1 1123445555432 234556666
Q ss_pred cCCCC
Q psy15138 269 KPEHG 273 (320)
Q Consensus 269 ~~~~~ 273 (320)
++...
T Consensus 478 YP~~~ 482 (604)
T COG4178 478 YPNAA 482 (604)
T ss_pred CCCCC
Confidence 65543
No 473
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.46 E-value=6.4e-07 Score=82.10 Aligned_cols=60 Identities=15% Similarity=0.126 Sum_probs=38.1
Q ss_pred CCcchhh---ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHc-CCCcEEEEeCCCCCChhHHHH
Q psy15138 22 RIHERDD---DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALAL-SVPVFVVVTKIDMCPPNVLQD 86 (320)
Q Consensus 22 pgh~~~~---~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l-~i~~~v~lnk~Dl~~~~~le~ 86 (320)
|||=.=. +-.....+|.++. |++|..+...... .+.+.+ +.|.++|+||+|+.+.+..+.
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~--V~Dar~p~~~~~~---~i~~~l~~kp~IiVlNK~DL~~~~~~~~ 68 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIE--VLDARIPLSSRNP---MIDEIRGNKPRLIVLNKADLADPAVTKQ 68 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEE--EEeCCCCCCCCCh---hHHHHHCCCCEEEEEEccccCCHHHHHH
Confidence 6774333 3344677898877 9999876553222 222323 458999999999976543333
No 474
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.46 E-value=9.3e-08 Score=85.06 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=25.4
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHH-HHH
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLL-GVL 222 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl-~~l 222 (320)
..++++++|. |++++|+||||||||||+ ..|
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 3467777776 999999999999999996 444
No 475
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.45 E-value=6.5e-07 Score=76.02 Aligned_cols=58 Identities=17% Similarity=0.114 Sum_probs=39.9
Q ss_pred CCCcchhh---ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHc-CCCcEEEEeCCCCCChhH
Q psy15138 21 TRIHERDD---DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALAL-SVPVFVVVTKIDMCPPNV 83 (320)
Q Consensus 21 ~pgh~~~~---~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l-~i~~~v~lnk~Dl~~~~~ 83 (320)
-|||-.=. ....+..+|.+++ |+++.++......+ +...+ +.|.++|+||+|+.+.+.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~--v~D~~~~~~~~~~~---i~~~~~~k~~ilVlNK~Dl~~~~~ 63 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIE--VRDARIPLSSRNPL---LEKILGNKPRIIVLNKADLADPKK 63 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEE--EeeccCccCcCChh---hHhHhcCCCEEEEEehhhcCChHH
Confidence 37775433 4555788998877 99998877654333 23333 568999999999976543
No 476
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.45 E-value=1.5e-07 Score=89.38 Aligned_cols=101 Identities=17% Similarity=0.246 Sum_probs=59.6
Q ss_pred cccCCcc-CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccC-C-ccccceeecCC
Q psy15138 195 VESQDFL-EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILG-F-DSVGNVVNKPE 271 (320)
Q Consensus 195 l~~~~~~-g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~-~-~~~~~~v~~~~ 271 (320)
++.+.+. ||+++++||||-||||++++|+ |.++|++|. ..+ .++ ++-+|.... + .++.+.+....
T Consensus 359 V~~G~i~~gEvigilGpNgiGKTTFvk~LA-G~ikPdeg~-~~~-------~~v---SyKPQyI~~~~~gtV~~~l~~~~ 426 (591)
T COG1245 359 VEEGEIYDGEVIGILGPNGIGKTTFVKLLA-GVIKPDEGS-EED-------LKV---SYKPQYISPDYDGTVEDLLRSAI 426 (591)
T ss_pred ecCCeeecceEEEEECCCCcchHHHHHHHh-ccccCCCCC-Ccc-------ceE---eecceeecCCCCCcHHHHHHHhh
Confidence 4555554 9999999999999999999999 999999997 221 112 222222111 1 12222221111
Q ss_pred CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCCC
Q psy15138 272 HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPD 313 (320)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~ 313 (320)
...... .--..++++-+.+++.+++.+.+|||+...
T Consensus 427 ~~~~~~------s~~~~ei~~pl~l~~i~e~~v~~LSGGELQ 462 (591)
T COG1245 427 RSAFGS------SYFKTEIVKPLNLEDLLERPVDELSGGELQ 462 (591)
T ss_pred hhhccc------chhHHhhcCccchHHHHhcccccCCchhHH
Confidence 110000 001113444566688899999999997654
No 477
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.45 E-value=1.4e-07 Score=91.17 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=36.4
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCc-eeeecccc
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRG-HARQKLFR 240 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G-~i~~~~~~ 240 (320)
.+++++++. |+.++|+|||||||||||+ . |+..|.+| +|.+++.+
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~-~l~~~~sGg~I~ldg~~ 68 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--E-NKRKFSEGYEFFLDATH 68 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--c-CCCCCCCCCEEEECCEE
Confidence 345666554 9999999999999999999 6 78888888 68887543
No 478
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.42 E-value=2.4e-07 Score=92.06 Aligned_cols=80 Identities=18% Similarity=0.245 Sum_probs=63.3
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL 91 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~ 91 (320)
..+.++|+|||++|. .......+|.+++ |+++..|+..+++..+.+++..++|.++++||+|+.... .++.++++
T Consensus 80 ~~inliDTPG~~df~~~~~~~l~~aD~aIl--VvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~-~~~ll~~i 156 (527)
T TIGR00503 80 CLVNLLDTPGHEDFSEDTYRTLTAVDNCLM--VIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRD-PLELLDEV 156 (527)
T ss_pred eEEEEEECCChhhHHHHHHHHHHhCCEEEE--EEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCC-HHHHHHHH
Confidence 457789999999998 4445678899988 999999999999999999999999999999999986422 23344455
Q ss_pred HHhhc
Q psy15138 92 VRILK 96 (320)
Q Consensus 92 ~~~l~ 96 (320)
...+.
T Consensus 157 ~~~l~ 161 (527)
T TIGR00503 157 ENELK 161 (527)
T ss_pred HHHhC
Confidence 55443
No 479
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.40 E-value=9.5e-07 Score=76.22 Aligned_cols=56 Identities=18% Similarity=0.039 Sum_probs=33.2
Q ss_pred CCcchhh-ccCC-CCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCCh
Q psy15138 22 RIHERDD-DLPE-ASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPP 81 (320)
Q Consensus 22 pgh~~~~-~~~~-~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~ 81 (320)
|.|.-|. ++.. ...+|.+++ |+++.+....... .+ .....+.|.++|+||+|+.+.
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~--VvD~~~~~~~~~~-~l-~~~~~~~~~ilV~NK~Dl~~~ 76 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVH--VVDIFDFPGSLIP-RL-RLFGGNNPVILVGNKIDLLPK 76 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEE--EEECccCCCccch-hH-HHhcCCCcEEEEEEchhcCCC
Confidence 4444344 3333 355677766 9999875433221 22 123345689999999999743
No 480
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=2.8e-07 Score=93.71 Aligned_cols=81 Identities=19% Similarity=0.119 Sum_probs=65.3
Q ss_pred CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHH
Q psy15138 13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKL 90 (320)
Q Consensus 13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~ 90 (320)
+..+.+||+|||-+|. .-......|.+++ |++|.+|+++||.-=+.-|...++|.++++||||....+ +....++
T Consensus 75 ~~~iNlIDTPGHVDFt~EV~rslrvlDgavv--VvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~-~~~~~~~ 151 (697)
T COG0480 75 DYRINLIDTPGHVDFTIEVERSLRVLDGAVV--VVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGAD-FYLVVEQ 151 (697)
T ss_pred ceEEEEeCCCCccccHHHHHHHHHhhcceEE--EEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccC-hhhhHHH
Confidence 4679999999999999 4444567788988 999999999999988899999999999999999976432 3344455
Q ss_pred HHHhhc
Q psy15138 91 LVRILK 96 (320)
Q Consensus 91 ~~~~l~ 96 (320)
+...|.
T Consensus 152 l~~~l~ 157 (697)
T COG0480 152 LKERLG 157 (697)
T ss_pred HHHHhC
Confidence 554443
No 481
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.36 E-value=3.6e-07 Score=94.34 Aligned_cols=65 Identities=22% Similarity=0.188 Sum_probs=58.6
Q ss_pred CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC
Q psy15138 13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC 79 (320)
Q Consensus 13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~ 79 (320)
+..+.++|+|||.+|. +..+...+|.+++ |+++.+|+..+|++++..+...++|.++++||+|..
T Consensus 85 ~~~i~liDTPG~~~f~~~~~~al~~aD~~ll--Vvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 85 EYLINLIDTPGHVDFGGDVTRAMRAVDGAIV--VVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRL 151 (720)
T ss_pred ceEEEEEeCCCccccHHHHHHHHHhcCEEEE--EEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcc
Confidence 3458899999999998 6677889999999 999999999999999999888999999999999986
No 482
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.34 E-value=8.5e-07 Score=74.78 Aligned_cols=74 Identities=19% Similarity=0.193 Sum_probs=54.6
Q ss_pred ccccCCCCC--ceEEEeCCCcchhh-ccC-CCCccchhhhccceecCCCCchhHHHHHHHHHHcC-CCcEEEEeCCCCCC
Q psy15138 6 DQTPCTAEN--AASVFETRIHERDD-DLP-EASPADHSMLQSKVGANAGIVGMTKEHLGLALALS-VPVFVVVTKIDMCP 80 (320)
Q Consensus 6 ~~~~~~~~~--~~~~~d~pgh~~~~-~~~-~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~-i~~~v~lnk~Dl~~ 80 (320)
|+-+|+-.+ .+.+||+|||+||. |+. ...+++-+++ +|+.+.++..-.++-+.+..... +|.+|++||.|+.+
T Consensus 58 D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaiv--lVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~ 135 (187)
T COG2229 58 DFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIV--LVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFD 135 (187)
T ss_pred cccceEEcCcceEEEecCCCcHHHHHHHHHHhCCcceEEE--EEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCC
Confidence 455565544 79999999999999 432 2444666666 89988877664455567888888 79999999999964
Q ss_pred h
Q psy15138 81 P 81 (320)
Q Consensus 81 ~ 81 (320)
.
T Consensus 136 a 136 (187)
T COG2229 136 A 136 (187)
T ss_pred C
Confidence 3
No 483
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.33 E-value=1.9e-06 Score=79.50 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=39.4
Q ss_pred CCCcchhh---ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHH
Q psy15138 21 TRIHERDD---DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQD 86 (320)
Q Consensus 21 ~pgh~~~~---~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~ 86 (320)
=|||=.=. .-.....+|.++. |+++..+......+-..... +.|.++|+||+|+.+.+..+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~--VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~~~~~~ 71 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIE--VLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADPEVTKK 71 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEE--EEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCHHHHHH
Confidence 37774433 3344667788877 99998876543332222222 568999999999986643333
No 484
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.30 E-value=8.9e-07 Score=76.31 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=32.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK 237 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~ 237 (320)
|+.++|+||||||||||++.|+ |+++|+.|.+.+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~-~~i~~~~~~i~ie 59 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALL-AFIPPDERIITIE 59 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHH-hhcCCCCCEEEEC
Confidence 7779999999999999999999 9999999988875
No 485
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.29 E-value=5.3e-07 Score=79.41 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
|++++|+||||||||||+++|+ +.+
T Consensus 28 ~~~~~i~G~NGsGKSTll~~i~-~~l 52 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDAIT-YAL 52 (213)
T ss_pred cCEEEEECCCCCCHHHHHHHhe-eeE
Confidence 6789999999999999999999 654
No 486
>PRK13351 elongation factor G; Reviewed
Probab=98.27 E-value=8.8e-07 Score=91.17 Aligned_cols=82 Identities=15% Similarity=0.108 Sum_probs=68.6
Q ss_pred CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHH
Q psy15138 13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKL 90 (320)
Q Consensus 13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~ 90 (320)
...+.++|+|||.+|. +......+|.+++ |+++++|+..++.+++..+...++|.++++||+|+... .+...+++
T Consensus 72 ~~~i~liDtPG~~df~~~~~~~l~~aD~~il--Vvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~-~~~~~~~~ 148 (687)
T PRK13351 72 NHRINLIDTPGHIDFTGEVERSLRVLDGAVV--VFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGA-DLFKVLED 148 (687)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHhCCEEEE--EEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC-CHHHHHHH
Confidence 3458889999999998 5555677888888 99999999999999999999999999999999998754 46677777
Q ss_pred HHHhhcC
Q psy15138 91 LVRILKS 97 (320)
Q Consensus 91 ~~~~l~~ 97 (320)
++..+..
T Consensus 149 i~~~l~~ 155 (687)
T PRK13351 149 IEERFGK 155 (687)
T ss_pred HHHHHCC
Confidence 7776653
No 487
>KOG0060|consensus
Probab=98.27 E-value=1.5e-06 Score=84.95 Aligned_cols=65 Identities=17% Similarity=0.132 Sum_probs=48.1
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccC-CccccceeecCC
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILG-FDSVGNVVNKPE 271 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~-~~~~~~~v~~~~ 271 (320)
.|..+.|.||||||||+|+|+|+ |+.+..+|.+....... ...+..++|.++. ..+..+.+.++.
T Consensus 460 ~g~~LLItG~sG~GKtSLlRvlg-gLWp~~~G~l~k~~~~~-----~~~lfflPQrPYmt~GTLRdQvIYP~ 525 (659)
T KOG0060|consen 460 SGQNLLITGPSGCGKTSLLRVLG-GLWPSTGGKLTKPTDGG-----PKDLFFLPQRPYMTLGTLRDQVIYPL 525 (659)
T ss_pred CCCeEEEECCCCCchhHHHHHHh-cccccCCCeEEecccCC-----CCceEEecCCCCccccchhheeeccC
Confidence 49999999999999999999999 99999999987642211 1346777777543 345556666653
No 488
>PRK12740 elongation factor G; Reviewed
Probab=98.21 E-value=1.5e-06 Score=89.20 Aligned_cols=80 Identities=20% Similarity=0.127 Sum_probs=66.4
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL 91 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~ 91 (320)
..+.++|+|||.+|. +..+...+|.+++ |+++..|...++..++..++..++|.++++||+|+... .+...++++
T Consensus 60 ~~i~liDtPG~~~~~~~~~~~l~~aD~vll--vvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~-~~~~~~~~l 136 (668)
T PRK12740 60 HKINLIDTPGHVDFTGEVERALRVLDGAVV--VVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGA-DFFRVLAQL 136 (668)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHHhCeEEE--EEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCC-CHHHHHHHH
Confidence 458899999999987 5666778999988 99999999999999999999999999999999998753 345566666
Q ss_pred HHhhc
Q psy15138 92 VRILK 96 (320)
Q Consensus 92 ~~~l~ 96 (320)
...+.
T Consensus 137 ~~~l~ 141 (668)
T PRK12740 137 QEKLG 141 (668)
T ss_pred HHHHC
Confidence 66543
No 489
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.20 E-value=8.6e-06 Score=77.89 Aligned_cols=63 Identities=24% Similarity=0.211 Sum_probs=52.7
Q ss_pred ceEEEeCCCcch-----hh------ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC
Q psy15138 15 AASVFETRIHER-----DD------DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC 79 (320)
Q Consensus 15 ~~~~~d~pgh~~-----~~------~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~ 79 (320)
.+.+|||+|-+. |. -......+|.+++ ||++.+|+++.-.+-..+.+-.+.|+++|+||+|-.
T Consensus 52 ~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilf--vVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 52 EFILIDTGGLDDGDEDELQELIREQALIAIEEADVILF--VVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred eEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEE--EEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 488999999874 22 2344778888888 999999999999988889997778999999999976
No 490
>KOG0064|consensus
Probab=98.20 E-value=3.9e-06 Score=81.26 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=45.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeecccc-CCccccceeecCC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDIL-GFDSVGNVVNKPE 271 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~-~~~~~~~~v~~~~ 271 (320)
|..+.|+||||||||+|.|+|. |+.|...|....- . .-.+++.+|.+. ...+..+.+.++.
T Consensus 508 G~hLLItGPNGCGKSSLfRILg-gLWPvy~g~L~~P-----~---~~~mFYIPQRPYms~gtlRDQIIYPd 569 (728)
T KOG0064|consen 508 GMHLLITGPNGCGKSSLFRILG-GLWPVYNGLLSIP-----R---PNNIFYIPQRPYMSGGTLRDQIIYPD 569 (728)
T ss_pred CceEEEECCCCccHHHHHHHHh-ccCcccCCeeecC-----C---CcceEeccCCCccCcCcccceeecCC
Confidence 8999999999999999999999 9999888876642 1 223567777653 2445556666654
No 491
>KOG2355|consensus
Probab=98.16 E-value=2.3e-06 Score=73.85 Aligned_cols=65 Identities=22% Similarity=0.113 Sum_probs=44.6
Q ss_pred eeeeeecCCCeeeeecceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR 240 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~ 240 (320)
.+++.+..+.|....+....++.-...|.|..+||.||||||||||+|+ |.--...|.|.+.+.+
T Consensus 13 aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLs-GKhmv~~~~v~Vlgrs 77 (291)
T KOG2355|consen 13 AIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILS-GKHMVGGGVVQVLGRS 77 (291)
T ss_pred eEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhc-CcccccCCeEEEcCcC
Confidence 3455544444443333333333222339999999999999999999999 9877777888887554
No 492
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.16 E-value=5.1e-06 Score=70.85 Aligned_cols=82 Identities=18% Similarity=0.178 Sum_probs=62.8
Q ss_pred CceEEEeCCCcc----------hhh-----ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCC
Q psy15138 14 NAASVFETRIHE----------RDD-----DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDM 78 (320)
Q Consensus 14 ~~~~~~d~pgh~----------~~~-----~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl 78 (320)
+.+.++|+||+. +|. .+......|.+++ |++++.+....+.+.+.++...++|+++++||+|+
T Consensus 64 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~--vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~ 141 (179)
T TIGR03598 64 DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVL--LMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADK 141 (179)
T ss_pred CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEE--EecCCCCCCHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 458899999963 333 1233345566766 99999988888888888888888999999999999
Q ss_pred CChhHHHHHHHHHHHhhcC
Q psy15138 79 CPPNVLQDTLKLLVRILKS 97 (320)
Q Consensus 79 ~~~~~le~~l~~~~~~l~~ 97 (320)
.+....+..++++++.+..
T Consensus 142 ~~~~~~~~~~~~i~~~l~~ 160 (179)
T TIGR03598 142 LKKSELNKQLKKIKKALKK 160 (179)
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 8777777777777777654
No 493
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.16 E-value=1e-06 Score=78.91 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=24.1
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCC
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDN 229 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~ 229 (320)
.+++++|+||||||||||+++|. +.+..
T Consensus 22 ~~~~~~i~GpNGsGKStll~ai~-~~l~~ 49 (243)
T cd03272 22 SPKHNVVVGRNGSGKSNFFAAIR-FVLSD 49 (243)
T ss_pred CCCcEEEECCCCCCHHHHHHHHH-HHHcC
Confidence 37789999999999999999998 66543
No 494
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.15 E-value=1.1e-06 Score=76.65 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=27.3
Q ss_pred ccccCCcc-CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 194 RVESQDFL-EIRVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 194 ~l~~~~~~-g~~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
+.+++++. |+.++|+||||||||||+|+|+ |..
T Consensus 16 v~n~i~l~~g~~~~ltGpNg~GKSTllr~i~-~~~ 49 (199)
T cd03283 16 VANDIDMEKKNGILITGSNMSGKSTFLRTIG-VNV 49 (199)
T ss_pred ecceEEEcCCcEEEEECCCCCChHHHHHHHH-HHH
Confidence 45555555 7899999999999999999998 754
No 495
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.14 E-value=1.7e-06 Score=76.28 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=26.2
Q ss_pred ecceeccccCCccCcEEEEEcCCCChHHHHHHHHh
Q psy15138 189 YLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 189 ~~~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
|.....+++.++ ++++|+||||||||||+++|.
T Consensus 14 ~~~~~~l~~~~~--~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 14 YAGEQVIGPFHK--SFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred CCCCeeeccCCC--CeEEEECCCCCCHHHHHHHHH
Confidence 334455555555 789999999999999999997
No 496
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.11 E-value=1.1e-05 Score=67.11 Aligned_cols=79 Identities=23% Similarity=0.275 Sum_probs=56.4
Q ss_pred CceEEEeCCCcchh----------h---ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138 14 NAASVFETRIHERD----------D---DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP 80 (320)
Q Consensus 14 ~~~~~~d~pgh~~~----------~---~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~ 80 (320)
..+.++|+||+.++ . ++.....+|.+++ |++++.+......+-+..+...+.|+++++||+|+..
T Consensus 50 ~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~--v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 127 (174)
T cd01895 50 KKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLL--VIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVE 127 (174)
T ss_pred eeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEE--EEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 34789999998544 2 2333457788877 9999988877666556666667889999999999976
Q ss_pred h--hHHHHHHHHHHHh
Q psy15138 81 P--NVLQDTLKLLVRI 94 (320)
Q Consensus 81 ~--~~le~~l~~~~~~ 94 (320)
. ..++...+.+...
T Consensus 128 ~~~~~~~~~~~~~~~~ 143 (174)
T cd01895 128 KDSKTMKEFKKEIRRK 143 (174)
T ss_pred ccHHHHHHHHHHHHhh
Confidence 5 4555555555554
No 497
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.08 E-value=1e-06 Score=73.79 Aligned_cols=63 Identities=19% Similarity=0.373 Sum_probs=32.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCCccccceeecCCC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEH 272 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~ 272 (320)
+..++++|+||+|||||+|.|. +......|+|+-... .|+........+.++....+++.|..
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~-~~~~~~t~~is~~~~-------rGkHTTt~~~l~~l~~g~~iIDTPGf 97 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALL-PEAKQKTGEISEKTG-------RGKHTTTHRELFPLPDGGYIIDTPGF 97 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHH-TSS----S---------------------SEEEEEETTSEEEECSHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH-hhcchhhhhhhcccC-------CCcccCCCeeEEecCCCcEEEECCCC
Confidence 6779999999999999999999 887777777765432 23333333333333444556665543
No 498
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.06 E-value=3.1e-06 Score=72.91 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDN 229 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~ 229 (320)
|+.++|+||||||||||+++|+ +.+.+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~-~~~~~ 28 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALR-QREQT 28 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHh-ccCCC
Confidence 6789999999999999999999 88765
No 499
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.05 E-value=4.4e-06 Score=76.20 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=33.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR 240 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~ 240 (320)
..++|+||||||||||++.|+ |.+.|++|++.+.+.+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~-~~~~~~~G~i~~~g~~ 148 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLA-RILSTGISQLGLRGKK 148 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHh-CccCCCCceEEECCEE
Confidence 468999999999999999999 9999999999887544
No 500
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.05 E-value=3.7e-06 Score=73.61 Aligned_cols=36 Identities=33% Similarity=0.514 Sum_probs=29.1
Q ss_pred CccCcEEEEEcCCCChHHHHHHHH----hcCcCCCCCceee
Q psy15138 199 DFLEIRVAVVGNVDAGKSTLLGVL----THGELDNGRGHAR 235 (320)
Q Consensus 199 ~~~g~~v~ivGpnGsGKSTLl~~l----~~G~l~~~~G~i~ 235 (320)
+|...+++|+||||||||||+++| . |..+|+.|.+.
T Consensus 19 ~~~~g~~~i~G~NGsGKTTLl~ai~~~l~-G~~~~~~~~~~ 58 (204)
T cd03240 19 EFFSPLTLIVGQNGAGKTTIIEALKYALT-GELPPNSKGGA 58 (204)
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHHHHHc-CCCCccccccc
Confidence 343337999999999999999998 5 88888777654
Done!