Query psy15138
Match_columns 320
No_of_seqs 450 out of 3841
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 21:34:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15138.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15138hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fvq_A Fe(3+) IONS import ATP- 99.7 5E-18 1.7E-22 158.9 5.4 130 175-312 4-144 (359)
2 3tif_A Uncharacterized ABC tra 99.7 1.9E-18 6.6E-23 153.3 2.4 133 176-312 2-151 (235)
3 3tui_C Methionine import ATP-b 99.7 2.5E-18 8.5E-23 161.2 3.2 134 174-311 23-168 (366)
4 3rlf_A Maltose/maltodextrin im 99.7 5.3E-18 1.8E-22 159.9 4.0 129 176-312 4-139 (381)
5 1v43_A Sugar-binding transport 99.7 3.9E-17 1.3E-21 153.9 8.0 130 175-312 11-147 (372)
6 3gfo_A Cobalt import ATP-bindi 99.7 1.1E-17 3.8E-22 151.7 3.6 130 175-311 7-148 (275)
7 2yyz_A Sugar ABC transporter, 99.7 2.7E-17 9.1E-22 154.3 4.8 128 176-311 4-138 (359)
8 4g1u_C Hemin import ATP-bindin 99.7 3.4E-17 1.2E-21 147.9 5.0 129 174-312 10-147 (266)
9 2pcj_A ABC transporter, lipopr 99.7 3E-17 1E-21 144.6 3.6 129 175-311 4-145 (224)
10 1g6h_A High-affinity branched- 99.7 4.5E-17 1.5E-21 146.4 4.5 131 175-311 7-158 (257)
11 2it1_A 362AA long hypothetical 99.6 3.7E-17 1.3E-21 153.4 3.5 128 176-311 4-138 (362)
12 1z47_A CYSA, putative ABC-tran 99.6 3.1E-17 1.1E-21 153.6 2.9 131 174-311 13-150 (355)
13 1oxx_K GLCV, glucose, ABC tran 99.6 4.5E-17 1.5E-21 152.6 3.9 128 176-311 4-145 (353)
14 1g29_1 MALK, maltose transport 99.6 5.1E-17 1.7E-21 153.2 3.8 128 176-311 4-144 (372)
15 2olj_A Amino acid ABC transpor 99.6 7.2E-17 2.5E-21 145.4 4.5 129 175-311 24-164 (263)
16 1b0u_A Histidine permease; ABC 99.6 7.2E-17 2.5E-21 145.4 4.0 129 175-311 6-158 (262)
17 1ji0_A ABC transporter; ATP bi 99.6 9.1E-17 3.1E-21 142.9 4.5 130 175-311 6-144 (240)
18 2rcn_A Probable GTPase ENGC; Y 99.6 4.6E-16 1.6E-20 145.5 9.5 189 33-311 128-319 (358)
19 1vpl_A ABC transporter, ATP-bi 99.6 7.3E-17 2.5E-21 144.9 3.2 131 173-311 13-151 (256)
20 2ihy_A ABC transporter, ATP-bi 99.6 1.6E-16 5.4E-21 144.4 4.2 132 175-311 21-166 (279)
21 2yz2_A Putative ABC transporte 99.6 1.9E-16 6.3E-21 143.0 4.0 116 192-311 20-143 (266)
22 3d31_A Sulfate/molybdate ABC t 99.6 7.3E-17 2.5E-21 150.8 0.8 112 194-312 15-133 (348)
23 1u0l_A Probable GTPase ENGC; p 99.6 2.3E-15 7.9E-20 138.2 9.9 66 14-83 63-132 (301)
24 1sgw_A Putative ABC transporte 99.6 3.5E-16 1.2E-20 136.8 2.1 124 174-311 9-138 (214)
25 2qi9_C Vitamin B12 import ATP- 99.6 1E-15 3.6E-20 136.8 4.5 120 175-312 4-132 (249)
26 2nq2_C Hypothetical ABC transp 99.6 5.2E-16 1.8E-20 139.1 2.2 121 175-311 4-133 (253)
27 2onk_A Molybdate/tungstate ABC 99.6 1.7E-15 5.8E-20 134.7 5.4 104 203-312 25-132 (240)
28 2ixe_A Antigen peptide transpo 99.5 1.6E-15 5.5E-20 137.2 4.3 135 175-311 16-161 (271)
29 2yv5_A YJEQ protein; hydrolase 99.5 1E-14 3.5E-19 134.0 9.1 58 23-82 65-126 (302)
30 2d2e_A SUFC protein; ABC-ATPas 99.5 9.6E-16 3.3E-20 137.1 1.3 129 175-312 3-149 (250)
31 3nh6_A ATP-binding cassette SU 99.5 1.4E-15 4.9E-20 139.7 1.5 132 175-311 53-195 (306)
32 2ff7_A Alpha-hemolysin translo 99.5 3.1E-15 1.1E-19 133.5 2.5 63 175-240 7-72 (247)
33 1mv5_A LMRA, multidrug resista 99.5 1.3E-14 4.4E-19 129.2 6.4 128 176-311 2-144 (243)
34 2pjz_A Hypothetical protein ST 99.5 8.4E-15 2.9E-19 131.9 2.0 128 176-311 2-133 (263)
35 1t9h_A YLOQ, probable GTPase E 99.5 6.7E-14 2.3E-18 128.5 7.6 122 32-236 83-206 (307)
36 2cbz_A Multidrug resistance-as 99.5 1.4E-14 4.9E-19 128.5 2.7 60 176-238 4-66 (237)
37 3gd7_A Fusion complex of cysti 99.5 1.3E-14 4.3E-19 137.5 2.6 125 174-311 18-160 (390)
38 2zu0_C Probable ATP-dependent 99.4 3E-14 1E-18 128.6 4.0 129 175-311 20-169 (267)
39 2pze_A Cystic fibrosis transme 99.4 5.5E-14 1.9E-18 124.0 4.0 61 175-238 6-69 (229)
40 2ghi_A Transport protein; mult 99.4 8.5E-14 2.9E-18 125.1 3.6 93 175-270 17-116 (260)
41 3b5x_A Lipid A export ATP-bind 99.4 1.2E-13 4.2E-18 137.6 5.1 93 175-270 341-440 (582)
42 2elf_A Protein translation elo 99.4 4.1E-13 1.4E-17 126.6 8.3 111 12-127 58-177 (370)
43 1wb1_A Translation elongation 99.4 3.6E-13 1.2E-17 131.2 8.1 112 14-128 73-187 (482)
44 1kk1_A EIF2gamma; initiation o 99.4 6.6E-13 2.2E-17 126.8 8.8 111 14-127 83-197 (410)
45 1yqt_A RNAse L inhibitor; ATP- 99.4 2.7E-13 9.4E-18 133.8 6.2 96 201-311 311-406 (538)
46 3qf4_B Uncharacterized ABC tra 99.4 8.1E-14 2.8E-18 139.4 2.4 92 175-270 354-452 (598)
47 3b60_A Lipid A export ATP-bind 99.4 1.2E-13 4.2E-18 137.6 3.5 93 175-270 341-440 (582)
48 1s0u_A EIF-2-gamma, translatio 99.4 7.7E-13 2.6E-17 126.3 8.5 111 14-127 81-195 (408)
49 4a82_A Cystic fibrosis transme 99.4 1.4E-13 4.9E-18 137.0 2.4 93 176-271 340-439 (578)
50 3sjy_A Translation initiation 99.3 1.3E-12 4.6E-17 124.5 8.6 111 14-127 75-189 (403)
51 3ozx_A RNAse L inhibitor; ATP 99.3 7.3E-13 2.5E-17 130.6 6.5 96 201-311 293-390 (538)
52 2yl4_A ATP-binding cassette SU 99.3 2.3E-13 7.8E-18 136.0 2.5 93 176-270 342-441 (595)
53 3j2k_7 ERF3, eukaryotic polype 99.3 9.1E-13 3.1E-17 127.0 6.5 87 12-100 93-193 (439)
54 3qf4_A ABC transporter, ATP-bi 99.3 2.4E-13 8.4E-18 135.6 1.6 133 175-311 341-484 (587)
55 1d2e_A Elongation factor TU (E 99.3 3.3E-12 1.1E-16 121.5 9.1 87 12-100 64-154 (397)
56 2bbs_A Cystic fibrosis transme 99.3 6.6E-13 2.3E-17 121.1 2.6 57 175-238 40-99 (290)
57 1r5b_A Eukaryotic peptide chai 99.3 2.3E-12 7.8E-17 125.2 6.4 83 13-97 120-216 (467)
58 2iw3_A Elongation factor 3A; a 99.3 1.5E-12 5.1E-17 135.2 3.5 159 52-237 550-733 (986)
59 2c78_A Elongation factor TU-A; 99.2 1E-11 3.5E-16 118.4 8.7 86 12-99 73-162 (405)
60 3mca_A HBS1, elongation factor 99.2 3.4E-12 1.2E-16 127.2 4.5 85 14-100 255-352 (592)
61 1jny_A EF-1-alpha, elongation 99.2 1.2E-11 4E-16 119.1 7.0 86 12-99 82-181 (435)
62 1zun_B Sulfate adenylate trans 99.2 9.6E-12 3.3E-16 119.7 6.4 85 13-99 103-192 (434)
63 4f4c_A Multidrug resistance pr 99.2 4E-12 1.4E-16 137.3 3.9 95 175-271 1076-1177(1321)
64 1f60_A Elongation factor EEF1A 99.2 6E-12 2.1E-16 121.9 4.4 84 12-97 83-178 (458)
65 3bk7_A ABC transporter ATP-bin 99.2 4.8E-12 1.7E-16 126.4 3.5 96 201-311 381-476 (607)
66 3avx_A Elongation factor TS, e 99.2 4.5E-11 1.5E-15 125.2 10.3 87 12-100 357-447 (1289)
67 3g5u_A MCG1178, multidrug resi 99.2 1.1E-11 3.6E-16 133.7 5.5 94 176-271 1031-1131(1284)
68 4f4c_A Multidrug resistance pr 99.2 5E-12 1.7E-16 136.6 2.9 95 175-271 415-516 (1321)
69 3p26_A Elongation factor 1 alp 99.2 1.5E-11 5E-16 120.0 5.5 83 12-96 109-203 (483)
70 3g5u_A MCG1178, multidrug resi 99.1 7.8E-12 2.7E-16 134.7 1.9 134 176-312 388-532 (1284)
71 1yqt_A RNAse L inhibitor; ATP- 99.1 1.2E-11 4.2E-16 122.0 2.7 51 183-234 25-78 (538)
72 3izq_1 HBS1P, elongation facto 99.1 7.2E-11 2.4E-15 118.1 7.1 83 12-96 243-337 (611)
73 3bk7_A ABC transporter ATP-bin 99.1 1.3E-11 4.5E-16 123.2 1.0 51 183-234 95-148 (607)
74 1zo1_I IF2, translation initia 99.1 5.9E-11 2E-15 115.7 5.5 67 12-80 49-117 (501)
75 3sop_A Neuronal-specific septi 99.1 3.3E-11 1.1E-15 108.8 2.9 36 204-240 4-39 (270)
76 1mky_A Probable GTP-binding pr 99.1 4.4E-10 1.5E-14 108.2 10.9 64 15-80 50-124 (439)
77 3j25_A Tetracycline resistance 99.1 4.2E-11 1.4E-15 120.5 3.0 81 13-96 66-148 (638)
78 3j16_B RLI1P; ribosome recycli 99.0 1.7E-10 5.7E-15 115.2 5.6 52 183-235 81-135 (608)
79 1htw_A HI0065; nucleotide-bind 99.0 2.5E-11 8.5E-16 100.8 -1.1 46 193-240 21-69 (158)
80 3vqt_A RF-3, peptide chain rel 99.0 2.8E-10 9.5E-15 112.5 5.0 80 14-96 100-181 (548)
81 3j16_B RLI1P; ribosome recycli 99.0 1.9E-10 6.5E-15 114.8 3.4 93 202-311 378-472 (608)
82 1g7s_A Translation initiation 99.0 1.6E-09 5.5E-14 107.9 9.7 64 15-80 71-136 (594)
83 3ozx_A RNAse L inhibitor; ATP 99.0 7.8E-11 2.7E-15 116.1 0.1 32 202-234 25-56 (538)
84 3izy_P Translation initiation 98.9 2.6E-10 8.9E-15 112.0 3.1 65 14-80 52-118 (537)
85 1znw_A Guanylate kinase, GMP k 98.9 4.3E-11 1.5E-15 103.4 -3.0 26 202-228 20-45 (207)
86 2iw3_A Elongation factor 3A; a 98.9 2.5E-10 8.5E-15 118.7 2.2 110 184-311 440-553 (986)
87 3cb4_D GTP-binding protein LEP 98.9 2.6E-09 9E-14 106.3 7.5 107 14-127 71-179 (599)
88 2ywe_A GTP-binding protein LEP 98.8 2.6E-09 9.1E-14 106.2 6.8 107 14-127 73-181 (600)
89 3b85_A Phosphate starvation-in 98.8 3.8E-10 1.3E-14 97.9 0.5 41 193-236 14-54 (208)
90 3aez_A Pantothenate kinase; tr 98.8 1.8E-09 6.2E-14 99.3 4.9 32 201-233 89-120 (312)
91 2npi_A Protein CLP1; CLP1-PCF1 98.8 8.4E-11 2.9E-15 113.7 -4.3 101 201-312 137-241 (460)
92 3ux8_A Excinuclease ABC, A sub 98.8 6.6E-10 2.3E-14 112.4 1.5 43 192-235 31-97 (670)
93 4fn5_A EF-G 1, elongation fact 98.8 2.6E-09 9E-14 108.7 5.3 81 13-96 84-166 (709)
94 2hjg_A GTP-binding protein ENG 98.8 1.1E-08 3.8E-13 98.3 7.9 66 14-81 51-126 (436)
95 2h5e_A Peptide chain release f 98.7 7.3E-09 2.5E-13 101.9 5.6 80 14-96 82-163 (529)
96 1z6g_A Guanylate kinase; struc 98.7 4.5E-09 1.5E-13 91.5 2.9 38 195-236 13-53 (218)
97 3cnl_A YLQF, putative uncharac 98.7 1.7E-09 6E-14 97.0 0.2 62 22-89 5-69 (262)
98 1tf7_A KAIC; homohexamer, hexa 98.7 3.2E-10 1.1E-14 111.5 -5.5 109 192-317 25-144 (525)
99 4dcu_A GTP-binding protein ENG 98.7 2.8E-08 9.5E-13 96.0 7.8 65 14-80 71-145 (456)
100 2vf7_A UVRA2, excinuclease ABC 98.7 2.2E-09 7.6E-14 110.3 -0.0 41 53-93 382-429 (842)
101 2rdo_7 EF-G, elongation factor 98.7 1.6E-08 5.5E-13 102.7 6.3 81 14-97 82-164 (704)
102 1puj_A YLQF, conserved hypothe 98.7 1.4E-08 4.7E-13 92.1 5.0 65 18-87 3-71 (282)
103 3tr5_A RF-3, peptide chain rel 98.6 2.8E-08 9.4E-13 97.7 5.7 80 14-96 82-163 (528)
104 1s96_A Guanylate kinase, GMP k 98.6 1.2E-08 4.3E-13 89.0 1.9 36 202-238 16-53 (219)
105 3ux8_A Excinuclease ABC, A sub 98.6 4.1E-08 1.4E-12 99.3 5.2 42 52-93 204-252 (670)
106 2eyu_A Twitching motility prot 98.6 1E-08 3.4E-13 91.9 0.6 43 195-238 17-61 (261)
107 3euj_A Chromosome partition pr 98.5 2.5E-08 8.7E-13 96.5 3.4 37 203-240 30-66 (483)
108 2obl_A ESCN; ATPase, hydrolase 98.5 2.2E-08 7.4E-13 93.4 2.7 60 175-239 45-107 (347)
109 3b9q_A Chloroplast SRP recepto 98.5 2.8E-08 9.6E-13 90.9 2.8 39 201-240 99-137 (302)
110 2v9p_A Replication protein E1; 98.5 8.7E-09 3E-13 94.3 -0.6 51 177-236 103-156 (305)
111 1tq4_A IIGP1, interferon-induc 98.5 2.1E-08 7.3E-13 95.4 1.9 35 204-239 71-105 (413)
112 2dpy_A FLII, flagellum-specifi 98.5 2.4E-08 8.1E-13 96.0 2.0 60 175-239 131-193 (438)
113 2pt7_A CAG-ALFA; ATPase, prote 98.5 5.2E-08 1.8E-12 90.2 3.9 37 202-239 171-207 (330)
114 4gp7_A Metallophosphoesterase; 98.5 3.1E-08 1.1E-12 82.8 1.6 36 201-237 8-55 (171)
115 2i3b_A HCR-ntpase, human cance 98.5 2.4E-08 8.1E-13 85.2 0.8 35 202-239 1-35 (189)
116 1rj9_A FTSY, signal recognitio 98.5 5E-08 1.7E-12 89.3 2.9 39 201-240 101-139 (304)
117 3a00_A Guanylate kinase, GMP k 98.5 5.1E-08 1.8E-12 82.4 2.6 26 202-228 1-26 (186)
118 2lkc_A Translation initiation 98.5 2.9E-07 1E-11 76.0 7.2 111 14-129 55-170 (178)
119 2gza_A Type IV secretion syste 98.5 9.2E-08 3.1E-12 89.6 4.4 36 202-238 175-210 (361)
120 1zp6_A Hypothetical protein AT 98.4 1.2E-07 4.3E-12 79.9 4.5 34 202-238 9-42 (191)
121 1lvg_A Guanylate kinase, GMP k 98.4 5.5E-08 1.9E-12 83.3 2.2 26 202-228 4-29 (198)
122 3asz_A Uridine kinase; cytidin 98.4 8.5E-08 2.9E-12 82.4 3.4 28 201-229 5-32 (211)
123 3c8u_A Fructokinase; YP_612366 98.4 5.3E-08 1.8E-12 83.9 2.0 37 201-238 21-60 (208)
124 4dhe_A Probable GTP-binding pr 98.4 3.7E-07 1.2E-11 78.6 7.1 113 14-129 79-210 (223)
125 2og2_A Putative signal recogni 98.4 7.5E-08 2.6E-12 90.1 2.7 39 201-240 156-194 (359)
126 1dar_A EF-G, elongation factor 98.4 1.5E-07 5.3E-12 95.3 4.9 80 14-96 77-158 (691)
127 1sq5_A Pantothenate kinase; P- 98.4 1.1E-07 3.9E-12 87.0 3.1 35 201-236 79-115 (308)
128 2dy1_A Elongation factor G; tr 98.4 1.9E-07 6.3E-12 94.4 4.3 79 14-96 74-154 (665)
129 2qm8_A GTPase/ATPase; G protei 98.4 3E-08 1E-12 92.1 -1.4 46 193-239 43-91 (337)
130 2yhs_A FTSY, cell division pro 98.4 1.2E-07 4.1E-12 91.8 2.7 37 201-238 292-328 (503)
131 3e70_C DPA, signal recognition 98.3 1.1E-07 3.9E-12 87.8 2.0 39 201-240 128-166 (328)
132 4a74_A DNA repair and recombin 98.3 1.3E-07 4.5E-12 81.8 2.2 34 195-229 18-51 (231)
133 2jeo_A Uridine-cytidine kinase 98.3 1.3E-07 4.5E-12 83.5 2.1 35 192-227 12-49 (245)
134 3pqc_A Probable GTP-binding pr 98.3 1.3E-06 4.3E-11 73.1 8.0 110 14-128 68-192 (195)
135 1kgd_A CASK, peripheral plasma 98.3 1.8E-07 6.1E-12 78.7 2.6 35 200-235 3-38 (180)
136 1lw7_A Transcriptional regulat 98.3 1.2E-07 4E-12 88.9 1.6 34 202-236 170-207 (365)
137 1qhl_A Protein (cell division 98.3 2.7E-08 9.2E-13 87.3 -2.6 36 202-238 27-62 (227)
138 3tr0_A Guanylate kinase, GMP k 98.3 1.9E-07 6.5E-12 79.5 2.7 27 201-228 6-32 (205)
139 2xex_A Elongation factor G; GT 98.3 3.2E-07 1.1E-11 93.1 4.7 80 14-96 75-156 (693)
140 3ec1_A YQEH GTPase; atnos1, at 98.3 2.2E-07 7.5E-12 87.3 2.8 62 14-81 49-113 (369)
141 3lnc_A Guanylate kinase, GMP k 98.3 3.1E-07 1.1E-11 80.2 3.1 26 202-227 27-52 (231)
142 1pui_A ENGB, probable GTP-bind 98.3 2.5E-07 8.7E-12 78.9 2.5 55 176-236 4-64 (210)
143 1n0u_A EF-2, elongation factor 98.3 1.8E-07 6.1E-12 96.8 1.6 80 14-95 98-189 (842)
144 2bdt_A BH3686; alpha-beta prot 98.3 3E-07 1E-11 77.6 2.6 33 202-238 2-34 (189)
145 2qnr_A Septin-2, protein NEDD5 98.2 4.3E-07 1.5E-11 82.9 3.3 48 185-237 4-52 (301)
146 2f1r_A Molybdopterin-guanine d 98.2 1.5E-07 5.1E-12 78.9 0.0 36 203-239 3-41 (171)
147 3szr_A Interferon-induced GTP- 98.2 2.9E-07 9.8E-12 92.0 2.0 34 205-239 48-82 (608)
148 3iev_A GTP-binding protein ERA 98.2 8.9E-07 3E-11 81.0 5.0 112 13-131 58-183 (308)
149 2ygr_A Uvrabc system protein A 98.2 1.1E-06 3.8E-11 91.3 6.2 136 52-222 523-688 (993)
150 1svi_A GTP-binding protein YSX 98.2 3.8E-06 1.3E-10 70.4 8.4 108 14-127 69-192 (195)
151 1ye8_A Protein THEP1, hypothet 98.2 3.6E-07 1.2E-11 77.0 2.0 24 204-228 2-25 (178)
152 1p9r_A General secretion pathw 98.2 5.8E-07 2E-11 85.7 3.3 37 201-238 166-202 (418)
153 2oap_1 GSPE-2, type II secreti 98.2 8.5E-07 2.9E-11 86.7 4.1 36 202-238 260-295 (511)
154 1upt_A ARL1, ADP-ribosylation 98.2 3.1E-06 1.1E-10 69.1 6.9 111 14-130 51-169 (171)
155 2j41_A Guanylate kinase; GMP, 98.2 7.3E-07 2.5E-11 75.9 3.0 30 202-232 6-35 (207)
156 3pih_A Uvrabc system protein A 98.1 2.7E-06 9.2E-11 88.3 7.3 42 52-93 466-514 (916)
157 2ehv_A Hypothetical protein PH 98.1 7.2E-07 2.5E-11 78.1 2.3 43 195-238 23-67 (251)
158 2ewv_A Twitching motility prot 98.1 5.5E-07 1.9E-11 84.7 1.3 36 201-237 135-171 (372)
159 2qag_B Septin-6, protein NEDD5 98.1 6.1E-07 2.1E-11 85.5 1.6 32 195-227 30-66 (427)
160 1ega_A Protein (GTP-binding pr 98.1 9.5E-06 3.2E-10 73.9 8.9 106 15-129 57-174 (301)
161 4eun_A Thermoresistant glucoki 98.1 1.5E-06 5.1E-11 74.1 3.1 32 202-238 29-60 (200)
162 2r6f_A Excinuclease ABC subuni 98.1 1.3E-06 4.6E-11 90.4 3.1 42 52-93 506-554 (972)
163 3uie_A Adenylyl-sulfate kinase 98.1 1E-06 3.4E-11 75.2 1.6 35 201-237 24-60 (200)
164 4bas_A ADP-ribosylation factor 98.0 9.8E-06 3.3E-10 68.0 7.5 72 14-87 63-148 (199)
165 3ney_A 55 kDa erythrocyte memb 98.0 2.2E-06 7.6E-11 73.3 3.5 28 200-228 17-44 (197)
166 3jvv_A Twitching mobility prot 98.0 1.4E-06 4.7E-11 81.4 2.2 33 202-235 123-156 (356)
167 1nij_A Hypothetical protein YJ 98.0 1.8E-06 6.1E-11 79.4 2.8 34 204-238 6-47 (318)
168 1cr0_A DNA primase/helicase; R 98.0 1.2E-06 4.1E-11 79.3 1.4 35 201-236 34-69 (296)
169 2h57_A ADP-ribosylation factor 98.0 5.8E-06 2E-10 69.2 5.6 108 14-127 67-184 (190)
170 3h2y_A GTPase family protein; 98.0 4.6E-06 1.6E-10 78.2 5.4 21 205-226 163-183 (368)
171 2x77_A ADP-ribosylation factor 98.0 7.5E-06 2.6E-10 68.4 6.1 110 14-129 66-183 (189)
172 3tau_A Guanylate kinase, GMP k 98.0 2.5E-06 8.6E-11 73.3 3.2 28 201-229 7-34 (208)
173 1wf3_A GTP-binding protein; GT 98.0 5.2E-06 1.8E-10 75.7 5.4 104 15-129 56-172 (301)
174 4e22_A Cytidylate kinase; P-lo 98.0 1.3E-06 4.6E-11 77.4 1.5 41 195-235 20-62 (252)
175 2qag_C Septin-7; cell cycle, c 98.0 2.9E-06 1E-10 80.8 3.7 49 176-232 12-60 (418)
176 2bbw_A Adenylate kinase 4, AK4 98.0 1.6E-06 5.5E-11 76.4 1.7 36 202-237 27-64 (246)
177 1rz3_A Hypothetical protein rb 98.0 1.7E-06 5.9E-11 73.9 1.8 35 202-237 22-56 (201)
178 3t1o_A Gliding protein MGLA; G 98.0 5.7E-06 2E-10 69.1 5.0 65 15-81 75-150 (198)
179 1pzn_A RAD51, DNA repair and r 98.0 2.7E-06 9.3E-11 79.2 3.2 43 195-238 124-173 (349)
180 2vp4_A Deoxynucleoside kinase; 97.9 3.4E-06 1.2E-10 73.6 3.1 33 201-238 19-51 (230)
181 1ksh_A ARF-like protein 2; sma 97.9 9.1E-06 3.1E-10 67.6 5.5 111 14-130 62-180 (186)
182 3kta_A Chromosome segregation 97.9 3.6E-06 1.2E-10 70.3 2.9 30 204-234 28-57 (182)
183 4aby_A DNA repair protein RECN 97.9 1.6E-06 5.5E-11 82.2 0.7 25 202-228 61-85 (415)
184 1ewq_A DNA mismatch repair pro 97.9 1.9E-06 6.6E-11 88.0 1.0 42 193-235 567-609 (765)
185 1kag_A SKI, shikimate kinase I 97.9 3.7E-06 1.3E-10 69.5 2.4 26 202-228 4-29 (173)
186 1oix_A RAS-related protein RAB 97.9 5.1E-06 1.8E-10 70.0 3.0 25 204-229 31-55 (191)
187 1zj6_A ADP-ribosylation factor 97.9 8.7E-06 3E-10 67.9 4.3 109 14-128 60-176 (187)
188 2kjq_A DNAA-related protein; s 97.9 4.1E-06 1.4E-10 68.3 2.1 35 201-237 35-71 (149)
189 2w0m_A SSO2452; RECA, SSPF, un 97.9 3.2E-06 1.1E-10 72.9 1.3 36 201-237 22-57 (235)
190 3tqc_A Pantothenate kinase; bi 97.9 6E-06 2E-10 76.0 3.1 30 204-234 94-125 (321)
191 1knq_A Gluconate kinase; ALFA/ 97.9 6.4E-06 2.2E-10 68.3 3.0 32 201-237 7-38 (175)
192 1r8s_A ADP-ribosylation factor 97.8 1.3E-05 4.5E-10 64.9 4.2 108 14-127 44-159 (164)
193 3ec2_A DNA replication protein 97.8 3.1E-06 1.1E-10 70.7 0.3 31 202-233 38-68 (180)
194 4dcu_A GTP-binding protein ENG 97.8 7.5E-06 2.6E-10 78.9 2.8 108 15-127 244-366 (456)
195 3t5d_A Septin-7; GTP-binding p 97.8 3.3E-05 1.1E-09 69.1 6.8 59 36-97 116-175 (274)
196 1ni3_A YCHF GTPase, YCHF GTP-b 97.8 1E-05 3.5E-10 76.4 3.5 36 202-238 20-67 (392)
197 2hjg_A GTP-binding protein ENG 97.8 4.6E-06 1.6E-10 79.9 1.1 79 15-95 224-317 (436)
198 3qq5_A Small GTP-binding prote 97.8 1E-05 3.5E-10 77.2 3.4 105 15-131 84-197 (423)
199 1cke_A CK, MSSA, protein (cyti 97.8 3.5E-06 1.2E-10 72.9 -0.0 33 203-236 6-41 (227)
200 3reg_A RHO-like small GTPase; 97.8 1.1E-05 3.7E-10 67.8 3.0 109 16-132 73-190 (194)
201 3t5g_A GTP-binding protein RHE 97.8 2.6E-05 8.9E-10 64.4 5.4 110 15-133 55-172 (181)
202 2ce2_X GTPase HRAS; signaling 97.7 2.4E-05 8.1E-10 63.0 4.8 105 16-129 53-164 (166)
203 1moz_A ARL1, ADP-ribosylation 97.7 4.1E-05 1.4E-09 63.2 6.3 66 14-81 62-134 (183)
204 3cr8_A Sulfate adenylyltranfer 97.7 7.8E-06 2.7E-10 80.6 2.1 36 201-237 368-405 (552)
205 3llu_A RAS-related GTP-binding 97.7 5.1E-05 1.7E-09 63.9 6.8 66 14-82 69-145 (196)
206 1n0w_A DNA repair protein RAD5 97.7 1.8E-05 6.2E-10 68.8 3.9 44 195-239 17-67 (243)
207 2atx_A Small GTP binding prote 97.7 7.3E-05 2.5E-09 62.5 7.2 65 15-81 67-137 (194)
208 2f9l_A RAB11B, member RAS onco 97.7 1.3E-05 4.4E-10 67.8 2.3 23 204-227 7-29 (199)
209 2efe_B Small GTP-binding prote 97.7 1.7E-05 6E-10 65.3 3.0 64 15-80 62-131 (181)
210 3clv_A RAB5 protein, putative; 97.7 1.2E-05 4.2E-10 67.2 2.0 63 14-78 93-159 (208)
211 2gco_A H9, RHO-related GTP-bin 97.7 7.9E-05 2.7E-09 63.0 7.1 67 15-83 74-146 (201)
212 2g6b_A RAS-related protein RAB 97.7 3.5E-05 1.2E-09 63.3 4.7 64 15-80 61-130 (180)
213 3con_A GTPase NRAS; structural 97.7 7.6E-05 2.6E-09 62.1 6.9 63 16-80 71-140 (190)
214 1h65_A Chloroplast outer envel 97.7 4.9E-05 1.7E-09 67.8 5.9 76 15-92 88-182 (270)
215 3nwj_A ATSK2; P loop, shikimat 97.7 8.7E-06 3E-10 72.3 0.8 49 175-227 17-72 (250)
216 1g16_A RAS-related protein SEC 97.7 4E-05 1.4E-09 62.2 4.8 106 15-129 53-164 (170)
217 2fh5_B SR-beta, signal recogni 97.6 2.9E-05 9.8E-10 66.2 4.0 78 14-94 54-143 (214)
218 1vg8_A RAS-related protein RAB 97.6 7.1E-05 2.4E-09 63.1 6.4 65 15-81 58-132 (207)
219 2b6h_A ADP-ribosylation factor 97.6 2.3E-05 7.7E-10 66.0 3.2 108 14-127 73-188 (192)
220 2h17_A ADP-ribosylation factor 97.6 2.8E-05 9.5E-10 64.5 3.6 66 14-81 65-137 (181)
221 1zd9_A ADP-ribosylation factor 97.6 2.1E-05 7.2E-10 65.8 2.8 107 15-127 68-182 (188)
222 2j1l_A RHO-related GTP-binding 97.6 0.00011 3.9E-09 62.7 7.5 68 15-84 83-156 (214)
223 1wb9_A DNA mismatch repair pro 97.6 1.7E-05 5.8E-10 81.5 2.4 33 194-227 597-631 (800)
224 1w1w_A Structural maintenance 97.6 2.1E-05 7.2E-10 75.1 2.9 30 202-232 26-55 (430)
225 2qpt_A EH domain-containing pr 97.6 1.6E-05 5.5E-10 78.4 2.1 76 15-92 155-244 (550)
226 3vaa_A Shikimate kinase, SK; s 97.6 2.8E-05 9.5E-10 66.1 3.3 33 194-227 14-49 (199)
227 2gf9_A RAS-related protein RAB 97.6 2.3E-05 8E-10 65.4 2.8 64 15-80 72-141 (189)
228 2ged_A SR-beta, signal recogni 97.6 2.4E-05 8.3E-10 65.3 2.7 78 14-93 91-183 (193)
229 1vma_A Cell division protein F 97.6 1.8E-05 6.1E-10 72.3 1.9 37 201-238 103-139 (306)
230 3o47_A ADP-ribosylation factor 97.6 3.3E-05 1.1E-09 71.2 3.7 110 14-129 209-326 (329)
231 2px0_A Flagellar biosynthesis 97.6 1.9E-05 6.4E-10 71.8 1.9 35 201-236 104-139 (296)
232 2cxx_A Probable GTP-binding pr 97.6 8.6E-05 3E-09 61.5 5.9 113 15-132 45-186 (190)
233 1nrj_B SR-beta, signal recogni 97.6 5.3E-05 1.8E-09 64.7 4.7 70 14-85 55-139 (218)
234 2qt1_A Nicotinamide riboside k 97.6 4E-05 1.4E-09 65.3 3.6 26 202-228 21-46 (207)
235 1wms_A RAB-9, RAB9, RAS-relate 97.6 0.00021 7.1E-09 58.4 7.9 107 15-129 57-173 (177)
236 1mh1_A RAC1; GTP-binding, GTPa 97.6 3.7E-05 1.3E-09 63.5 3.2 65 16-82 55-125 (186)
237 2yc2_C IFT27, small RAB-relate 97.5 7.8E-05 2.7E-09 62.7 5.3 64 15-80 74-146 (208)
238 3kkq_A RAS-related protein M-R 97.5 7.4E-05 2.5E-09 61.7 5.1 63 16-80 68-137 (183)
239 2x8a_A Nuclear valosin-contain 97.5 3.5E-05 1.2E-09 69.2 3.2 31 205-238 47-77 (274)
240 3bc1_A RAS-related protein RAB 97.5 6.6E-05 2.2E-09 62.2 4.7 64 15-80 71-141 (195)
241 3thx_A DNA mismatch repair pro 97.5 2.4E-05 8.2E-10 81.5 2.4 37 194-231 651-698 (934)
242 1ky3_A GTP-binding protein YPT 97.5 0.00015 5.2E-09 59.4 6.9 64 15-80 59-132 (182)
243 3thx_B DNA mismatch repair pro 97.5 2.7E-05 9.2E-10 80.9 2.5 31 193-223 661-694 (918)
244 4dsu_A GTPase KRAS, isoform 2B 97.5 4E-05 1.4E-09 63.4 3.1 76 16-93 54-136 (189)
245 2fv8_A H6, RHO-related GTP-bin 97.5 4.5E-05 1.5E-09 64.8 3.5 69 15-85 74-148 (207)
246 2fu5_C RAS-related protein RAB 97.5 0.0001 3.5E-09 60.8 5.5 64 15-80 58-127 (183)
247 1z08_A RAS-related protein RAB 97.5 5.9E-05 2E-09 61.3 3.9 64 15-80 56-125 (170)
248 2www_A Methylmalonic aciduria 97.5 2.6E-05 8.9E-10 72.5 1.9 35 202-237 74-108 (349)
249 2pez_A Bifunctional 3'-phospho 97.5 2.8E-05 9.5E-10 64.7 1.9 30 201-232 4-33 (179)
250 4djt_A GTP-binding nuclear pro 97.5 4.6E-05 1.6E-09 65.1 3.2 110 15-132 62-177 (218)
251 4gzl_A RAS-related C3 botulinu 97.5 3.9E-05 1.3E-09 65.1 2.5 66 16-83 80-151 (204)
252 2dyk_A GTP-binding protein; GT 97.5 6.1E-05 2.1E-09 60.6 3.6 65 15-81 50-123 (161)
253 1jjv_A Dephospho-COA kinase; P 97.5 5.4E-05 1.8E-09 64.4 3.3 21 204-225 4-24 (206)
254 3cph_A RAS-related protein SEC 97.5 7E-05 2.4E-09 63.4 4.0 64 15-80 70-139 (213)
255 1zu4_A FTSY; GTPase, signal re 97.5 4E-05 1.4E-09 70.4 2.6 37 201-238 104-140 (320)
256 1m2o_B GTP-binding protein SAR 97.4 6.7E-05 2.3E-09 62.9 3.4 64 15-80 68-138 (190)
257 1udx_A The GTP-binding protein 97.4 4E-05 1.4E-09 72.9 2.2 25 202-227 157-181 (416)
258 1c1y_A RAS-related protein RAP 97.4 6.8E-05 2.3E-09 60.6 3.1 64 15-80 52-122 (167)
259 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 7E-05 2.4E-09 60.9 3.1 24 200-223 21-44 (149)
260 3tkl_A RAS-related protein RAB 97.4 5.7E-05 2E-09 63.0 2.7 65 15-81 66-136 (196)
261 1kao_A RAP2A; GTP-binding prot 97.4 2.5E-05 8.5E-10 63.1 0.4 104 16-128 53-164 (167)
262 2bcg_Y Protein YP2, GTP-bindin 97.4 0.00011 3.8E-09 62.1 4.4 64 15-80 58-127 (206)
263 3cpj_B GTP-binding protein YPT 97.4 5.9E-05 2E-09 64.9 2.7 109 15-132 63-178 (223)
264 2o5v_A DNA replication and rep 97.4 7.1E-05 2.4E-09 69.8 3.3 22 202-225 27-48 (359)
265 1in4_A RUVB, holliday junction 97.4 2.5E-05 8.5E-10 72.1 0.1 34 203-237 52-89 (334)
266 1z0f_A RAB14, member RAS oncog 97.4 2.8E-05 9.5E-10 63.7 0.3 64 15-80 65-134 (179)
267 2fg5_A RAB-22B, RAS-related pr 97.4 4.1E-05 1.4E-09 64.2 1.3 64 15-80 73-142 (192)
268 2if2_A Dephospho-COA kinase; a 97.4 7.8E-05 2.7E-09 63.2 3.0 21 204-225 3-23 (204)
269 2j0v_A RAC-like GTP-binding pr 97.4 0.00016 5.4E-09 61.4 5.0 65 15-81 58-128 (212)
270 3bwd_D RAC-like GTP-binding pr 97.4 0.00017 5.7E-09 59.3 5.0 64 16-81 58-127 (182)
271 3oes_A GTPase rhebl1; small GT 97.4 7.3E-05 2.5E-09 63.1 2.8 108 15-131 73-188 (201)
272 3tw8_B RAS-related protein RAB 97.4 5.8E-05 2E-09 61.9 2.1 64 15-80 59-127 (181)
273 1nlf_A Regulatory protein REPA 97.4 6.8E-05 2.3E-09 67.1 2.6 29 200-229 28-56 (279)
274 1r2q_A RAS-related protein RAB 97.4 3.1E-05 1E-09 62.8 0.2 64 15-80 56-125 (170)
275 2qor_A Guanylate kinase; phosp 97.3 8.2E-05 2.8E-09 63.4 2.9 25 202-227 12-36 (204)
276 2cvh_A DNA repair and recombin 97.3 7.6E-05 2.6E-09 63.7 2.6 36 199-237 17-52 (220)
277 2a9k_A RAS-related protein RAL 97.3 2.3E-05 8E-10 64.7 -0.6 64 15-80 67-137 (187)
278 1ls1_A Signal recognition part 97.3 5.9E-05 2E-09 68.5 2.0 38 201-239 97-134 (295)
279 1z2a_A RAS-related protein RAB 97.3 8.4E-05 2.9E-09 60.1 2.7 64 15-80 55-123 (168)
280 2bme_A RAB4A, RAS-related prot 97.3 8E-05 2.7E-09 61.6 2.5 64 15-80 60-129 (186)
281 1f6b_A SAR1; gtpases, N-termin 97.3 0.00012 4.2E-09 61.7 3.7 64 15-80 70-140 (198)
282 1zbd_A Rabphilin-3A; G protein 97.3 0.00024 8.3E-09 59.7 5.6 64 15-80 58-127 (203)
283 2gj8_A MNME, tRNA modification 97.3 0.00013 4.4E-09 60.2 3.7 25 202-227 4-28 (172)
284 1fzq_A ADP-ribosylation factor 97.3 0.00013 4.4E-09 60.6 3.6 66 15-82 61-133 (181)
285 1x3s_A RAS-related protein RAB 97.3 0.00016 5.3E-09 60.2 4.1 107 15-131 65-179 (195)
286 2o8b_B DNA mismatch repair pro 97.3 0.00013 4.3E-09 76.9 4.3 25 202-228 789-813 (1022)
287 1u8z_A RAS-related protein RAL 97.3 5.1E-05 1.7E-09 61.2 1.0 64 15-80 53-123 (168)
288 2wji_A Ferrous iron transport 97.3 0.00017 5.7E-09 58.9 4.1 23 204-227 5-27 (165)
289 2xtp_A GTPase IMAP family memb 97.3 0.00027 9.3E-09 62.3 5.7 65 14-81 71-154 (260)
290 1odf_A YGR205W, hypothetical 3 97.3 5.4E-05 1.9E-09 68.6 1.0 27 202-229 31-57 (290)
291 1ixz_A ATP-dependent metallopr 97.3 0.00012 4.1E-09 64.4 3.2 31 205-238 52-82 (254)
292 2zej_A Dardarin, leucine-rich 97.3 0.00013 4.6E-09 60.6 3.3 23 204-227 4-26 (184)
293 2fn4_A P23, RAS-related protei 97.3 5.6E-05 1.9E-09 62.0 0.9 64 15-80 58-128 (181)
294 3i8s_A Ferrous iron transport 97.3 7.2E-05 2.5E-09 67.0 1.6 103 13-126 49-165 (274)
295 3lda_A DNA repair protein RAD5 97.3 0.00017 5.8E-09 68.3 4.2 43 195-238 171-220 (400)
296 1m7g_A Adenylylsulfate kinase; 97.3 5.5E-05 1.9E-09 64.8 0.8 35 202-237 25-61 (211)
297 2oil_A CATX-8, RAS-related pro 97.3 4.3E-05 1.5E-09 63.9 0.1 64 15-80 75-144 (193)
298 3lxw_A GTPase IMAP family memb 97.3 0.00034 1.2E-08 61.5 5.9 111 14-133 70-211 (247)
299 3l0i_B RAS-related protein RAB 97.2 0.00014 4.7E-09 61.3 3.2 65 15-81 83-153 (199)
300 3def_A T7I23.11 protein; chlor 97.2 0.00039 1.3E-08 61.6 6.2 72 15-89 85-176 (262)
301 1iy2_A ATP-dependent metallopr 97.2 0.00014 4.7E-09 65.0 3.2 31 205-238 76-106 (278)
302 2yvu_A Probable adenylyl-sulfa 97.2 9.6E-05 3.3E-09 61.8 1.9 32 202-234 13-44 (186)
303 1tf7_A KAIC; homohexamer, hexa 97.2 0.0001 3.5E-09 72.2 2.5 32 200-233 279-310 (525)
304 2a5j_A RAS-related protein RAB 97.2 0.00016 5.3E-09 60.4 3.1 64 15-80 71-140 (191)
305 2qu8_A Putative nucleolar GTP- 97.2 0.00019 6.4E-09 62.0 3.6 66 14-81 76-157 (228)
306 2hup_A RAS-related protein RAB 97.2 0.00028 9.7E-09 59.6 4.6 64 15-80 79-148 (201)
307 2il1_A RAB12; G-protein, GDP, 97.2 0.00012 4.1E-09 61.3 2.2 64 15-80 76-145 (192)
308 3q72_A GTP-binding protein RAD 97.2 0.00032 1.1E-08 56.6 4.7 64 15-80 50-120 (166)
309 3t34_A Dynamin-related protein 97.2 0.00026 8.9E-09 65.8 4.6 41 194-235 26-68 (360)
310 1sxj_E Activator 1 40 kDa subu 97.2 0.00012 4.2E-09 67.3 2.3 33 205-238 39-72 (354)
311 1svm_A Large T antigen; AAA+ f 97.2 0.00015 5.3E-09 68.0 2.8 32 201-236 168-199 (377)
312 2p67_A LAO/AO transport system 97.2 0.00011 3.9E-09 67.9 1.8 35 201-236 55-89 (341)
313 3qf7_A RAD50; ABC-ATPase, ATPa 97.2 0.00017 5.9E-09 67.4 3.0 20 204-223 25-44 (365)
314 3t61_A Gluconokinase; PSI-biol 97.1 0.00018 6.1E-09 61.0 2.7 24 203-227 19-42 (202)
315 3lxx_A GTPase IMAP family memb 97.1 0.00028 9.5E-09 61.4 4.0 28 204-232 31-58 (239)
316 3gee_A MNME, tRNA modification 97.1 0.0008 2.7E-08 65.1 7.6 104 15-129 282-397 (476)
317 2gf0_A GTP-binding protein DI- 97.1 0.00017 5.6E-09 60.3 2.4 64 15-80 57-128 (199)
318 2wjg_A FEOB, ferrous iron tran 97.1 0.00024 8.2E-09 58.8 3.3 23 203-226 8-30 (188)
319 3th5_A RAS-related C3 botulinu 96.2 7.1E-05 2.4E-09 63.2 0.0 64 16-81 80-149 (204)
320 1z0j_A RAB-22, RAS-related pro 97.1 0.00021 7.2E-09 57.8 2.8 64 15-80 56-125 (170)
321 3kb2_A SPBC2 prophage-derived 97.1 0.00025 8.5E-09 58.0 3.1 22 204-226 3-24 (173)
322 3cm0_A Adenylate kinase; ATP-b 97.1 0.00023 7.8E-09 59.2 2.9 22 202-223 4-25 (186)
323 2ohf_A Protein OLA1, GTP-bindi 97.1 0.00027 9.1E-09 66.7 3.5 35 202-237 22-67 (396)
324 2erx_A GTP-binding protein DI- 97.1 7.3E-05 2.5E-09 60.6 -0.3 64 15-80 52-123 (172)
325 1e69_A Chromosome segregation 97.1 0.00018 6.2E-09 65.9 2.3 23 204-227 26-48 (322)
326 1ek0_A Protein (GTP-binding pr 97.1 0.0002 6.8E-09 57.9 2.3 64 15-80 53-122 (170)
327 3qks_A DNA double-strand break 97.1 0.00027 9.1E-09 60.4 3.1 24 200-223 21-44 (203)
328 2ew1_A RAS-related protein RAB 97.1 0.0004 1.4E-08 58.9 4.2 64 15-80 76-145 (201)
329 2p5s_A RAS and EF-hand domain 97.0 0.0001 3.6E-09 62.0 0.4 63 15-79 78-146 (199)
330 2bov_A RAla, RAS-related prote 97.0 0.00011 3.7E-09 61.8 0.4 64 15-80 63-133 (206)
331 2f7s_A C25KG, RAS-related prot 97.0 8.9E-05 3E-09 63.2 -0.2 64 15-80 85-155 (217)
332 3lxx_A GTPase IMAP family memb 97.0 0.00032 1.1E-08 61.0 3.5 72 14-88 78-167 (239)
333 4eaq_A DTMP kinase, thymidylat 97.0 0.00029 9.9E-09 61.4 3.1 31 202-234 26-56 (229)
334 3qkt_A DNA double-strand break 97.0 0.00029 9.7E-09 65.1 3.1 24 200-223 21-44 (339)
335 2qtf_A Protein HFLX, GTP-bindi 97.0 0.00039 1.3E-08 64.9 4.0 23 205-228 182-204 (364)
336 3c5c_A RAS-like protein 12; GD 97.0 0.0011 3.6E-08 55.2 6.4 64 15-80 70-141 (187)
337 1qhx_A CPT, protein (chloramph 97.0 0.00035 1.2E-08 57.6 3.3 25 202-227 3-27 (178)
338 2j69_A Bacterial dynamin-like 97.0 0.00033 1.1E-08 70.9 3.4 66 14-81 174-245 (695)
339 2q3h_A RAS homolog gene family 97.0 0.00034 1.2E-08 58.7 2.9 64 15-80 69-138 (201)
340 3q3j_B RHO-related GTP-binding 97.0 0.00072 2.5E-08 57.7 5.0 64 15-80 76-145 (214)
341 1np6_A Molybdopterin-guanine d 97.0 0.0002 6.8E-09 59.8 1.4 25 204-229 8-32 (174)
342 1ex7_A Guanylate kinase; subst 97.0 0.00035 1.2E-08 59.0 2.9 19 205-223 4-22 (186)
343 3geh_A MNME, tRNA modification 97.0 0.0012 4.3E-08 63.5 7.2 102 15-130 273-384 (462)
344 1ega_A Protein (GTP-binding pr 97.0 0.00037 1.3E-08 63.3 3.3 27 200-227 6-32 (301)
345 2y8e_A RAB-protein 6, GH09086P 97.0 0.00013 4.3E-09 59.7 0.1 64 15-80 64-133 (179)
346 1m7b_A RND3/RHOE small GTP-bin 97.0 0.00062 2.1E-08 56.3 4.4 64 15-80 56-125 (184)
347 3q85_A GTP-binding protein REM 97.0 0.00058 2E-08 55.2 4.1 63 15-79 52-122 (169)
348 2hxs_A RAB-26, RAS-related pro 96.9 0.00042 1.4E-08 56.6 3.2 64 15-80 57-129 (178)
349 2nzj_A GTP-binding protein REM 96.9 0.00047 1.6E-08 56.1 3.3 64 15-80 53-125 (175)
350 2o52_A RAS-related protein RAB 96.9 0.00019 6.5E-09 60.5 0.9 64 15-80 75-144 (200)
351 1y63_A LMAJ004144AAA protein; 96.9 0.00051 1.7E-08 57.4 3.5 22 202-223 10-31 (184)
352 3r7w_A Gtpase1, GTP-binding pr 96.9 0.0014 4.8E-08 59.5 6.7 68 15-84 53-133 (307)
353 1kht_A Adenylate kinase; phosp 96.9 0.00048 1.7E-08 57.2 3.3 22 202-223 3-24 (192)
354 3lw7_A Adenylate kinase relate 96.9 0.00045 1.5E-08 56.2 3.0 20 204-223 3-22 (179)
355 3lvq_E ARF-GAP with SH3 domain 96.9 0.00054 1.8E-08 66.4 3.9 109 14-128 366-482 (497)
356 3m6a_A ATP-dependent protease 96.9 0.00029 9.7E-09 69.4 1.9 36 201-237 107-142 (543)
357 3gj0_A GTP-binding nuclear pro 96.9 0.0003 1E-08 60.2 1.8 65 15-81 65-134 (221)
358 3dz8_A RAS-related protein RAB 96.9 0.0001 3.6E-09 61.5 -1.1 64 15-80 73-142 (191)
359 2jaq_A Deoxyguanosine kinase; 96.9 0.00051 1.7E-08 57.7 3.1 21 204-225 2-22 (205)
360 3ihw_A Centg3; RAS, centaurin, 96.9 0.00093 3.2E-08 55.5 4.7 59 16-79 69-132 (184)
361 2dr3_A UPF0273 protein PH0284; 96.9 0.00046 1.6E-08 59.8 2.9 42 196-237 17-58 (247)
362 2qag_A Septin-2, protein NEDD5 96.8 0.0019 6.4E-08 60.2 7.0 53 44-97 152-205 (361)
363 1q3t_A Cytidylate kinase; nucl 96.8 0.00059 2E-08 59.4 3.4 23 202-225 16-38 (236)
364 1via_A Shikimate kinase; struc 96.8 0.00051 1.7E-08 56.7 2.7 20 204-223 6-25 (175)
365 3k1j_A LON protease, ATP-depen 96.8 0.00059 2E-08 67.9 3.7 34 202-236 60-94 (604)
366 1vht_A Dephospho-COA kinase; s 96.8 0.00066 2.3E-08 58.1 3.2 21 203-223 5-25 (218)
367 1gtv_A TMK, thymidylate kinase 96.8 0.00035 1.2E-08 59.3 1.4 24 204-228 2-25 (214)
368 1z06_A RAS-related protein RAB 96.8 0.00031 1.1E-08 58.4 0.9 64 15-80 70-141 (189)
369 3trf_A Shikimate kinase, SK; a 96.7 0.00082 2.8E-08 55.8 3.4 22 202-223 5-26 (185)
370 1ly1_A Polynucleotide kinase; 96.7 0.00077 2.6E-08 55.4 3.2 20 204-223 4-23 (181)
371 3r20_A Cytidylate kinase; stru 96.7 0.00074 2.5E-08 59.1 3.2 21 203-223 10-30 (233)
372 2rhm_A Putative kinase; P-loop 96.7 0.00079 2.7E-08 56.1 3.1 22 202-223 5-26 (193)
373 2v54_A DTMP kinase, thymidylat 96.7 0.00085 2.9E-08 56.5 3.3 25 202-227 4-28 (204)
374 2ffh_A Protein (FFH); SRP54, s 96.7 0.00061 2.1E-08 64.9 2.6 37 201-238 97-133 (425)
375 3k53_A Ferrous iron transport 96.7 0.00075 2.6E-08 60.0 3.1 24 204-228 5-28 (271)
376 2wkq_A NPH1-1, RAS-related C3 96.7 0.0006 2.1E-08 61.8 2.5 64 16-81 205-274 (332)
377 1pui_A ENGB, probable GTP-bind 96.7 0.0045 1.5E-07 52.0 7.8 109 15-127 73-196 (210)
378 1uf9_A TT1252 protein; P-loop, 96.7 0.0008 2.7E-08 56.5 3.0 21 203-223 9-29 (203)
379 3k53_A Ferrous iron transport 96.7 0.00038 1.3E-08 61.9 1.0 104 15-129 51-165 (271)
380 2ze6_A Isopentenyl transferase 96.7 0.00082 2.8E-08 59.3 3.1 22 204-226 3-24 (253)
381 3iij_A Coilin-interacting nucl 96.7 0.00081 2.8E-08 55.6 2.9 22 202-223 11-32 (180)
382 2p67_A LAO/AO transport system 96.7 0.00073 2.5E-08 62.4 2.9 108 13-127 148-258 (341)
383 1j8m_F SRP54, signal recogniti 96.7 0.00046 1.6E-08 62.6 1.4 35 202-237 98-132 (297)
384 1nks_A Adenylate kinase; therm 96.6 0.00091 3.1E-08 55.5 3.0 20 204-223 3-22 (194)
385 2plr_A DTMP kinase, probable t 96.6 0.001 3.4E-08 56.2 3.3 25 202-227 4-28 (213)
386 1gwn_A RHO-related GTP-binding 96.6 0.0015 5.2E-08 55.4 4.4 64 15-80 77-146 (205)
387 1jwy_B Dynamin A GTPase domain 96.6 0.00058 2E-08 61.8 1.8 67 14-82 131-214 (315)
388 1jal_A YCHF protein; nucleotid 96.6 0.0013 4.5E-08 61.2 4.1 34 202-236 2-46 (363)
389 2p5t_B PEZT; postsegregational 96.6 0.00077 2.6E-08 59.4 2.3 26 202-228 32-57 (253)
390 3q72_A GTP-binding protein RAD 96.6 0.001 3.5E-08 53.6 2.9 23 204-227 4-26 (166)
391 2wwf_A Thymidilate kinase, put 96.6 0.0011 3.8E-08 56.1 3.3 22 202-223 10-31 (212)
392 3fb4_A Adenylate kinase; psych 96.6 0.0011 3.7E-08 56.6 3.2 20 204-223 2-21 (216)
393 3iby_A Ferrous iron transport 96.6 0.00012 4.2E-09 64.9 -2.9 103 14-127 48-164 (256)
394 2qag_A Septin-2, protein NEDD5 96.6 0.00087 3E-08 62.4 2.6 28 204-232 39-66 (361)
395 3ice_A Transcription terminati 96.6 0.0007 2.4E-08 63.5 1.9 25 202-227 174-198 (422)
396 2aka_B Dynamin-1; fusion prote 96.6 0.00074 2.5E-08 60.5 2.0 67 14-81 125-207 (299)
397 2c95_A Adenylate kinase 1; tra 96.5 0.0012 4.2E-08 55.0 3.2 22 202-223 9-30 (196)
398 2z0h_A DTMP kinase, thymidylat 96.5 0.0012 4.2E-08 55.1 3.2 20 204-223 2-21 (197)
399 2nzj_A GTP-binding protein REM 96.5 0.0013 4.6E-08 53.3 3.3 23 204-227 6-28 (175)
400 1gvn_B Zeta; postsegregational 96.5 0.0011 3.9E-08 59.6 3.0 25 202-227 33-57 (287)
401 3q85_A GTP-binding protein REM 96.5 0.0014 4.9E-08 52.8 3.3 23 204-227 4-26 (169)
402 3dl0_A Adenylate kinase; phosp 96.5 0.0013 4.4E-08 56.1 3.2 20 204-223 2-21 (216)
403 1m2o_B GTP-binding protein SAR 96.5 0.0013 4.4E-08 54.9 3.1 22 202-223 23-44 (190)
404 1tev_A UMP-CMP kinase; ploop, 96.5 0.0014 4.6E-08 54.5 3.3 22 202-223 3-24 (196)
405 2erx_A GTP-binding protein DI- 96.5 0.0014 4.9E-08 52.8 3.3 21 204-225 5-25 (172)
406 1fzq_A ADP-ribosylation factor 96.5 0.0013 4.3E-08 54.5 2.9 24 202-226 16-39 (181)
407 1z2a_A RAS-related protein RAB 96.5 0.0014 4.9E-08 52.6 3.2 20 204-223 7-26 (168)
408 3ihw_A Centg3; RAS, centaurin, 96.5 0.002 7E-08 53.4 4.2 24 203-226 21-44 (184)
409 1nn5_A Similar to deoxythymidy 96.5 0.0014 4.8E-08 55.5 3.2 22 202-223 9-30 (215)
410 2ged_A SR-beta, signal recogni 96.5 0.0011 3.9E-08 54.9 2.6 23 203-226 49-71 (193)
411 3hr8_A Protein RECA; alpha and 96.5 0.00082 2.8E-08 62.5 1.8 40 194-234 52-92 (356)
412 2bwj_A Adenylate kinase 5; pho 96.5 0.0015 5.1E-08 54.6 3.2 22 202-223 12-33 (199)
413 3lxw_A GTPase IMAP family memb 96.5 0.0015 5.1E-08 57.4 3.3 25 202-227 21-45 (247)
414 3ake_A Cytidylate kinase; CMP 96.5 0.0015 5.1E-08 55.0 3.2 22 204-226 4-25 (208)
415 1ko7_A HPR kinase/phosphatase; 96.5 0.0065 2.2E-07 55.4 7.6 23 201-223 143-165 (314)
416 1xjc_A MOBB protein homolog; s 96.5 0.0015 5.3E-08 54.1 3.2 24 204-228 6-29 (169)
417 3tw8_B RAS-related protein RAB 96.4 0.0014 4.9E-08 53.3 3.0 22 204-226 11-32 (181)
418 4ag6_A VIRB4 ATPase, type IV s 96.4 0.001 3.5E-08 62.4 2.3 35 202-237 35-69 (392)
419 1svi_A GTP-binding protein YSX 96.4 0.0016 5.3E-08 54.1 3.1 24 202-226 23-46 (195)
420 1kao_A RAP2A; GTP-binding prot 96.4 0.0017 5.6E-08 52.0 3.2 22 204-225 5-26 (167)
421 2dyk_A GTP-binding protein; GT 96.4 0.0013 4.6E-08 52.5 2.6 22 204-226 3-24 (161)
422 3b1v_A Ferrous iron uptake tra 96.4 0.0016 5.5E-08 58.2 3.3 23 204-227 5-27 (272)
423 2pt5_A Shikimate kinase, SK; a 96.4 0.0017 5.7E-08 52.9 3.1 20 204-223 2-21 (168)
424 3pqc_A Probable GTP-binding pr 96.4 0.0016 5.5E-08 53.8 3.1 23 203-226 24-46 (195)
425 2zej_A Dardarin, leucine-rich 96.4 0.0039 1.3E-07 51.5 5.5 113 14-129 56-177 (184)
426 1f6b_A SAR1; gtpases, N-termin 96.4 0.0014 4.7E-08 55.2 2.7 23 202-225 25-47 (198)
427 2lkc_A Translation initiation 96.4 0.0018 6.1E-08 52.7 3.3 22 202-223 8-29 (178)
428 1mky_A Probable GTP-binding pr 96.4 0.004 1.4E-07 59.4 6.2 108 15-127 229-352 (439)
429 3a1s_A Iron(II) transport prot 96.4 0.0008 2.7E-08 59.6 1.2 104 15-129 53-166 (258)
430 2ce2_X GTPase HRAS; signaling 96.4 0.0017 5.8E-08 51.8 3.1 20 204-223 5-24 (166)
431 3sjy_A Translation initiation 96.4 0.0037 1.3E-07 58.9 5.9 24 203-227 9-32 (403)
432 1u8z_A RAS-related protein RAL 96.4 0.0018 6.1E-08 51.9 3.2 20 204-223 6-25 (168)
433 2cxx_A Probable GTP-binding pr 96.4 0.0017 5.8E-08 53.5 3.1 22 204-226 3-24 (190)
434 2iwr_A Centaurin gamma 1; ANK 96.4 0.0041 1.4E-07 50.7 5.4 58 16-78 56-120 (178)
435 2pbr_A DTMP kinase, thymidylat 96.4 0.0017 6E-08 53.9 3.2 20 204-223 2-21 (195)
436 1moz_A ARL1, ADP-ribosylation 96.4 0.0013 4.4E-08 53.9 2.3 22 202-223 18-39 (183)
437 1e6c_A Shikimate kinase; phosp 96.4 0.0015 5.3E-08 53.3 2.7 20 204-223 4-23 (173)
438 1g16_A RAS-related protein SEC 96.4 0.0014 4.9E-08 52.7 2.5 20 204-223 5-24 (170)
439 1z0j_A RAB-22, RAS-related pro 96.4 0.0015 5.2E-08 52.6 2.6 22 204-226 8-29 (170)
440 1ek0_A Protein (GTP-binding pr 96.4 0.002 6.9E-08 51.7 3.3 20 204-223 5-24 (170)
441 1c1y_A RAS-related protein RAP 96.3 0.002 6.7E-08 51.7 3.2 22 204-225 5-26 (167)
442 1z08_A RAS-related protein RAB 96.3 0.002 6.7E-08 52.0 3.1 20 204-223 8-27 (170)
443 1wms_A RAB-9, RAB9, RAS-relate 96.3 0.0021 7E-08 52.3 3.2 20 204-223 9-28 (177)
444 2wjg_A FEOB, ferrous iron tran 96.3 0.00045 1.5E-08 57.1 -0.9 106 15-131 55-170 (188)
445 2vli_A Antibiotic resistance p 96.3 0.0016 5.4E-08 53.8 2.5 22 202-223 5-26 (183)
446 1ky3_A GTP-binding protein YPT 96.3 0.0021 7.1E-08 52.4 3.2 20 204-223 10-29 (182)
447 2fn4_A P23, RAS-related protei 96.3 0.0016 5.5E-08 53.0 2.5 21 203-223 10-30 (181)
448 3t1o_A Gliding protein MGLA; G 96.3 0.0018 6.1E-08 53.6 2.8 25 203-228 15-39 (198)
449 2iyv_A Shikimate kinase, SK; t 96.3 0.0018 6.2E-08 53.6 2.8 20 204-223 4-23 (184)
450 1zd8_A GTP:AMP phosphotransfer 96.3 0.0021 7.2E-08 55.3 3.2 22 202-223 7-28 (227)
451 2grj_A Dephospho-COA kinase; T 96.3 0.0022 7.5E-08 54.3 3.2 21 203-223 13-33 (192)
452 1qf9_A UMP/CMP kinase, protein 96.3 0.0021 7.3E-08 53.2 3.1 21 203-223 7-27 (194)
453 2cdn_A Adenylate kinase; phosp 96.3 0.0024 8.1E-08 53.8 3.3 22 202-223 20-41 (201)
454 1aky_A Adenylate kinase; ATP:A 96.3 0.0023 8E-08 54.7 3.3 22 202-223 4-25 (220)
455 1zak_A Adenylate kinase; ATP:A 96.3 0.002 6.7E-08 55.3 2.8 21 203-223 6-26 (222)
456 3clv_A RAB5 protein, putative; 96.2 0.0019 6.4E-08 53.5 2.6 23 203-226 8-30 (208)
457 1uj2_A Uridine-cytidine kinase 96.2 0.0022 7.6E-08 56.2 3.2 20 204-223 24-43 (252)
458 2hxs_A RAB-26, RAS-related pro 96.2 0.0022 7.7E-08 52.1 3.0 20 204-223 8-27 (178)
459 3kl4_A SRP54, signal recogniti 96.2 0.0012 4.1E-08 63.0 1.5 34 202-236 97-130 (433)
460 1ukz_A Uridylate kinase; trans 96.2 0.0024 8.1E-08 53.8 3.2 22 202-223 15-36 (203)
461 1r2q_A RAS-related protein RAB 96.2 0.0025 8.6E-08 51.2 3.2 22 204-225 8-29 (170)
462 1r8s_A ADP-ribosylation factor 96.2 0.0025 8.7E-08 51.0 3.2 20 204-223 2-21 (164)
463 4dsu_A GTPase KRAS, isoform 2B 96.2 0.0025 8.5E-08 52.3 3.2 20 204-223 6-25 (189)
464 2oil_A CATX-8, RAS-related pro 96.2 0.002 6.9E-08 53.5 2.6 20 204-223 27-46 (193)
465 3auy_A DNA double-strand break 96.2 0.0021 7.2E-08 59.9 3.0 24 200-223 23-46 (371)
466 1upt_A ARL1, ADP-ribosylation 96.2 0.0026 8.9E-08 51.3 3.2 24 203-226 8-31 (171)
467 3cbq_A GTP-binding protein REM 96.2 0.0021 7.4E-08 53.9 2.8 22 204-226 25-46 (195)
468 3t5d_A Septin-7; GTP-binding p 96.2 0.0022 7.4E-08 57.1 2.9 22 204-226 10-31 (274)
469 3izq_1 HBS1P, elongation facto 96.2 0.0042 1.4E-07 61.9 5.2 29 289-319 248-276 (611)
470 2e87_A Hypothetical protein PH 96.2 0.016 5.5E-07 53.6 8.9 104 15-128 215-334 (357)
471 2atv_A RERG, RAS-like estrogen 96.2 0.0017 5.8E-08 54.2 2.1 74 15-91 77-162 (196)
472 3bc1_A RAS-related protein RAB 96.2 0.0026 8.8E-08 52.3 3.2 20 204-223 13-32 (195)
473 2y8e_A RAB-protein 6, GH09086P 96.2 0.0025 8.6E-08 51.7 3.1 20 204-223 16-35 (179)
474 3dpu_A RAB family protein; roc 96.2 0.0017 5.8E-08 63.6 2.3 63 14-80 98-164 (535)
475 2ew1_A RAS-related protein RAB 96.2 0.0033 1.1E-07 53.1 3.8 24 204-227 28-51 (201)
476 1zuh_A Shikimate kinase; alpha 96.2 0.0028 9.6E-08 51.7 3.2 21 203-223 8-28 (168)
477 2dy1_A Elongation factor G; tr 96.2 0.0019 6.5E-08 65.0 2.5 32 202-234 9-42 (665)
478 1e4v_A Adenylate kinase; trans 96.2 0.0026 8.8E-08 54.2 3.1 20 204-223 2-21 (214)
479 1lnz_A SPO0B-associated GTP-bi 96.1 0.0022 7.4E-08 59.3 2.7 110 14-133 206-333 (342)
480 2e87_A Hypothetical protein PH 96.1 0.0024 8.2E-08 59.2 3.0 25 202-227 167-191 (357)
481 1lv7_A FTSH; alpha/beta domain 96.1 0.0024 8.3E-08 55.9 2.9 23 205-228 48-70 (257)
482 1yrb_A ATP(GTP)binding protein 96.1 0.0049 1.7E-07 53.9 4.9 68 14-84 109-189 (262)
483 3iby_A Ferrous iron transport 96.1 0.0027 9.1E-08 56.1 3.2 23 204-227 3-25 (256)
484 2a9k_A RAS-related protein RAL 96.1 0.0029 9.9E-08 51.7 3.2 21 203-223 19-39 (187)
485 1ksh_A ARF-like protein 2; sma 96.1 0.0029 1E-07 52.0 3.2 24 202-226 18-41 (186)
486 1a7j_A Phosphoribulokinase; tr 96.1 0.0015 5.2E-08 58.9 1.5 21 203-223 6-26 (290)
487 4dhe_A Probable GTP-binding pr 96.1 0.0018 6.2E-08 55.1 1.9 25 202-227 29-53 (223)
488 3tlx_A Adenylate kinase 2; str 96.1 0.0029 9.8E-08 55.4 3.3 22 202-223 29-50 (243)
489 2xtp_A GTPase IMAP family memb 96.1 0.0028 9.5E-08 55.7 3.1 24 203-227 23-46 (260)
490 2g6b_A RAS-related protein RAB 96.1 0.0031 1E-07 51.4 3.2 20 204-223 12-31 (180)
491 2xb4_A Adenylate kinase; ATP-b 96.1 0.0029 9.8E-08 54.5 3.1 20 204-223 2-21 (223)
492 3kkq_A RAS-related protein M-R 96.1 0.0031 1.1E-07 51.7 3.2 21 203-223 19-39 (183)
493 3con_A GTPase NRAS; structural 96.1 0.0031 1.1E-07 52.1 3.2 21 203-223 22-42 (190)
494 2dhr_A FTSH; AAA+ protein, hex 96.1 0.0043 1.5E-07 60.3 4.6 31 205-238 67-97 (499)
495 1z0f_A RAB14, member RAS oncog 96.1 0.0032 1.1E-07 51.1 3.2 20 204-223 17-36 (179)
496 2f6r_A COA synthase, bifunctio 96.1 0.0028 9.4E-08 56.8 3.0 22 202-223 75-96 (281)
497 2bme_A RAB4A, RAS-related prot 96.1 0.0033 1.1E-07 51.6 3.2 20 204-223 12-31 (186)
498 3be4_A Adenylate kinase; malar 96.1 0.0033 1.1E-07 53.7 3.4 22 202-223 5-26 (217)
499 2efe_B Small GTP-binding prote 96.1 0.0032 1.1E-07 51.3 3.1 20 204-223 14-33 (181)
500 1zbd_A Rabphilin-3A; G protein 96.1 0.0034 1.2E-07 52.5 3.3 22 204-226 10-31 (203)
No 1
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.70 E-value=5e-18 Score=158.94 Aligned_cols=130 Identities=14% Similarity=0.105 Sum_probs=88.9
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc----h-hhhh
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH----K-HEME 246 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~----~-~~~~ 246 (320)
.++++++++ .|+...+++++++. |++++|+||||||||||||+|+ |+++|++|+|.+++.+. . ....
T Consensus 4 ~l~i~~ls~----~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~ia-Gl~~p~~G~I~i~G~~i~~~~~~~~~~ 78 (359)
T 3fvq_A 4 ALHIGHLSK----SFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLA-GFEQPDSGEISLSGKTIFSKNTNLPVR 78 (359)
T ss_dssp CEEEEEEEE----EETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHH-TSSCCSEEEEEETTEEEESSSCBCCGG
T ss_pred EEEEEeEEE----EECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHh-cCCCCCCcEEEECCEECcccccccchh
Confidence 355665544 44556678888776 9999999999999999999999 99999999999986542 1 1112
Q ss_pred cCcceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 247 SGRTSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 247 ~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
...++.++|+...| .++.+++.++.. ......+.. +++.++++.+|+.++.+++|.+|||++.
T Consensus 79 ~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~---~~v~~~l~~~gL~~~~~r~~~~LSGGq~ 144 (359)
T 3fvq_A 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQER---QRIEAMLELTGISELAGRYPHELSGGQQ 144 (359)
T ss_dssp GSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHH---HHHHHHHHHHTCGGGTTSCGGGSCHHHH
T ss_pred hCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHH---HHHHHHHHHcCCchHhcCChhhCCHHHH
Confidence 23455566655444 356667766543 222333333 3444556666778899999999999653
No 2
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.70 E-value=1.9e-18 Score=153.28 Aligned_cols=133 Identities=14% Similarity=0.137 Sum_probs=83.4
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hh---h
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HE---M 245 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~---~ 245 (320)
++++++++.|........+++++++. |++++|+||||||||||+|+|+ |+++|++|+|.+++.+.. .. .
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~-Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIG-CLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHh-cCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 45566655554321124567777775 9999999999999999999999 999999999999864311 00 1
Q ss_pred hcCcceeeeccccCC--ccccceeecCCC----CCCCHHhHHHHHHHHHHHhcccCCccc-cccccccccCCCC
Q psy15138 246 ESGRTSSVGNDILGF--DSVGNVVNKPEH----GSLDWVKICERSAKVITFIDLAGHERY-LKTTVFGMTGHVP 312 (320)
Q Consensus 246 ~~g~v~~~~~~~~~~--~~~~~~v~~~~~----~~~~~~~~~~~~~~~l~~l~l~gl~~~-~~~~~~~LSG~~~ 312 (320)
+...++.++|+...+ .++.+++..+.. ...... +..+++.++++.+|+.+. .++++++|||++.
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 151 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE---ERRKRALECLKMAELEERFANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHH---HHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHH---HHHHHHHHHHHHCCCChhhhhCChhhCCHHHH
Confidence 111244444443332 245555544321 122222 233455566677777765 4899999999653
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.70 E-value=2.5e-18 Score=161.18 Aligned_cols=134 Identities=13% Similarity=0.068 Sum_probs=90.0
Q ss_pred eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hh--
Q psy15138 174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HE-- 244 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~-- 244 (320)
.+++++++++.|........++++++|. |++++|+||||||||||+|+|+ |+++|++|+|.+++.+.. .+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~-GL~~p~~G~I~i~G~~i~~~~~~~~~ 101 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN-LLERPTEGSVLVDGQELTTLSESELT 101 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH-TSSCCSEEEEEETTEECSSCCHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHh-cCCCCCceEEEECCEECCcCCHHHHH
Confidence 3678888777664332335577777776 9999999999999999999999 999999999999865411 11
Q ss_pred hhcCcceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 245 MESGRTSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 245 ~~~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
..+..++.++|+...+ .++.+++.++.. ......+.. +++.++++.+|+.++.+++|++|||++
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~---~~v~~lL~~vgL~~~~~~~~~~LSGGq 168 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVK---RRVTELLSLVGLGDKHDSYPSNLSGGQ 168 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHH---HHHHHHHHHHTCGGGTTCCTTTSCHHH
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHH---HHHHHHHHHcCCchHhcCChhhCCHHH
Confidence 1123344555544332 355566554322 223333333 345556666777889999999999964
No 4
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.69 E-value=5.3e-18 Score=159.85 Aligned_cols=129 Identities=15% Similarity=0.049 Sum_probs=88.0
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcce
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTS 251 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~ 251 (320)
++++++++ .|+...++++++|. |++++|+||||||||||||+|+ |+++|++|+|.+++.+... ......++
T Consensus 4 l~~~~l~~----~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~ia-Gl~~p~~G~I~i~G~~~~~~~~~~r~ig 78 (381)
T 3rlf_A 4 VQLQNVTK----AWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIA-GLETITSGDLFIGEKRMNDTPPAERGVG 78 (381)
T ss_dssp EEEEEEEE----EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH-TSSCCSEEEEEETTEECTTCCGGGSCEE
T ss_pred EEEEeEEE----EECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHH-cCCCCCCeEEEECCEECCCCCHHHCCEE
Confidence 55555544 44556678888776 9999999999999999999999 9999999999998654211 11123355
Q ss_pred eeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 252 SVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 252 ~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.++|++..| .++.+++.++.. ....+.+.. +++.++++.+|+.++.+++|++|||++.
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~r~p~~LSGGqr 139 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVIN---QRVNQVAEVLQLAHLLDRKPKALSGGQR 139 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHH---HHHHHHHHHTTCGGGTTCCGGGSCHHHH
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHcCCchhhcCChhHCCHHHH
Confidence 556655443 355666655432 233343333 3444556667778899999999999653
No 5
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.68 E-value=3.9e-17 Score=153.89 Aligned_cols=130 Identities=15% Similarity=0.060 Sum_probs=85.3
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRT 250 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v 250 (320)
.++++++++.| +...++++++|. |++++|+||||||||||||+|+ |+++|++|+|.+++.+... ......+
T Consensus 11 ~l~~~~l~~~y----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia-Gl~~p~~G~I~i~g~~i~~~~~~~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRF----GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIA-GLEEPTEGRIYFGDRDVTYLPPKDRNI 85 (372)
T ss_dssp CEEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH-TSSCCSEEEEEETTEECTTSCGGGGTE
T ss_pred eEEEEEEEEEE----CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHH-cCCCCCceEEEECCEECCCCChhhCcE
Confidence 46666655444 445567777775 9999999999999999999999 9999999999998654210 0111234
Q ss_pred eeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 251 SSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 251 ~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
+.++|+...| .++.+++.++.. ......+. .+++.++++.+|+.++.+++|++|||++.
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~---~~~v~~~l~~~~L~~~~~r~~~~LSGGq~ 147 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEI---DKRVRWAAELLQIEELLNRYPAQLSGGQR 147 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHH---HHHHHHHHHHTTCGGGTTSCTTTCCSSCH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHcCChhHhcCChhhCCHHHH
Confidence 4445544333 356666666532 22233222 34455666677778899999999999764
No 6
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.68 E-value=1.1e-17 Score=151.66 Aligned_cols=130 Identities=17% Similarity=0.073 Sum_probs=85.7
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch--------h
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK--------H 243 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~--------~ 243 (320)
.++++++++.|.. ...++++++|. |++++|+||||||||||+|+|+ |+++|++|+|.+++.+.. .
T Consensus 7 ~l~i~~ls~~y~~---~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~-Gl~~p~~G~I~~~G~~i~~~~~~~~~~ 82 (275)
T 3gfo_A 7 ILKVEELNYNYSD---GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFN-GILKPSSGRILFDNKPIDYSRKGIMKL 82 (275)
T ss_dssp EEEEEEEEEECTT---SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEETTEECCCSHHHHHHH
T ss_pred EEEEEEEEEEECC---CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHH-cCCCCCCeEEEECCEECCcccccHHHH
Confidence 5677776655532 23467777775 9999999999999999999999 999999999999865421 1
Q ss_pred hhhcCcceeeeccccCCccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 244 EMESGRTSSVGNDILGFDSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 244 ~~~~g~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
...+|+++|.+...+...++.+++.++.. ......+.. +++.++++.+|+.++.++++++|||++
T Consensus 83 ~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~---~~~~~~l~~~~L~~~~~~~~~~LSgGq 148 (275)
T 3gfo_A 83 RESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIR---KRVDNALKRTGIEHLKDKPTHCLSFGQ 148 (275)
T ss_dssp HHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHH---HHHHHHHHHTTCGGGTTSBGGGSCHHH
T ss_pred hCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHcCCchhhcCCcccCCHHH
Confidence 12244454443222222355555544322 223333333 344455666777889999999999964
No 7
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.66 E-value=2.7e-17 Score=154.28 Aligned_cols=128 Identities=17% Similarity=0.112 Sum_probs=85.9
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcce
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTS 251 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~ 251 (320)
++++++++. |+...++++++|. |++++|+||||||||||||+|+ |+++|++|+|.+++.+... ......++
T Consensus 4 l~~~~l~~~----y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia-Gl~~p~~G~I~i~g~~i~~~~~~~r~ig 78 (359)
T 2yyz_A 4 IRVVNLKKY----FGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLA-GIYKPTSGEIYFDDVLVNDIPPKYREVG 78 (359)
T ss_dssp EEEEEEEEE----ETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHH-TSSCCSEEEEEETTEECTTSCGGGTTEE
T ss_pred EEEEEEEEE----ECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHH-CCCCCCccEEEECCEECCCCChhhCcEE
Confidence 455555443 4445677777775 9999999999999999999999 9999999999998654211 11123455
Q ss_pred eeeccccCC--ccccceeecCCCC-CCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 252 SVGNDILGF--DSVGNVVNKPEHG-SLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 252 ~~~~~~~~~--~~~~~~v~~~~~~-~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
.++|+...| .++.+++.++... ..... +..+++.++++.+|+.++.+++|++|||++
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~---~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq 138 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRARRISKD---EVEKRVVEIARKLLIDNLLDRKPTQLSGGQ 138 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSSCSHHH---HTTHHHHHHHHHTTCGGGTTSCGGGSCHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHH---HHHHHHHHHHHHcCCchHhcCChhhCCHHH
Confidence 555554333 3566666654321 21111 222345566667777889999999999965
No 8
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.66 E-value=3.4e-17 Score=147.85 Aligned_cols=129 Identities=17% Similarity=0.105 Sum_probs=84.9
Q ss_pred eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch------hh
Q psy15138 174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK------HE 244 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~------~~ 244 (320)
..++++++++ .|+...+++++++. |++++|+||||||||||+|+|+ |+++|++|+|.+++.+.. ..
T Consensus 10 ~~l~~~~l~~----~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~-Gl~~p~~G~I~~~g~~~~~~~~~~~~ 84 (266)
T 4g1u_C 10 ALLEASHLHY----HVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLT-GYLSPSHGECHLLGQNLNSWQPKALA 84 (266)
T ss_dssp CEEEEEEEEE----EETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHT-SSSCCSSCEEEETTEETTTSCHHHHH
T ss_pred ceEEEEeEEE----EeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHh-cCCCCCCcEEEECCEECCcCCHHHHh
Confidence 4567776554 44556678888776 9999999999999999999999 999999999999865421 11
Q ss_pred hhcCcceeeeccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 245 MESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 245 ~~~g~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
..+++++|.+...+. .++.+++..+.... ......+ ++.++++.+|+.++.++++++|||++.
T Consensus 85 ~~i~~v~q~~~~~~~-~tv~e~l~~~~~~~-~~~~~~~---~~~~~l~~~~l~~~~~~~~~~LSgGq~ 147 (266)
T 4g1u_C 85 RTRAVMRQYSELAFP-FSVSEVIQMGRAPY-GGSQDRQ---ALQQVMAQTDCLALAQRDYRVLSGGEQ 147 (266)
T ss_dssp HHEEEECSCCCCCSC-CBHHHHHHGGGTTS-CSTTHHH---HHHHHHHHTTCSTTTTSBGGGCCHHHH
T ss_pred heEEEEecCCccCCC-CCHHHHHHhhhhhc-CcHHHHH---HHHHHHHHcCChhHhcCCcccCCHHHH
Confidence 234555544332222 34555554433221 1122223 334455566667888999999999653
No 9
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.65 E-value=3e-17 Score=144.58 Aligned_cols=129 Identities=14% Similarity=0.028 Sum_probs=83.0
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----h---h
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----H---E 244 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~---~ 244 (320)
.++++++++.| +...++++++|. |++++|+||||||||||+|+|+ |+++|++|+|.+++.+.. . .
T Consensus 4 ~l~~~~l~~~y----~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 78 (224)
T 2pcj_A 4 ILRAENIKKVI----RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILG-LLDAPTEGKVFLEGKEVDYTNEKELSL 78 (224)
T ss_dssp EEEEEEEEEEE----TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHT-TSSCCSEEEEEETTEECCSSCHHHHHH
T ss_pred EEEEEeEEEEE----CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEECCEECCCCCHHHHHH
Confidence 45666655444 445677777775 9999999999999999999999 999999999999764421 0 0
Q ss_pred hhcCcceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 245 MESGRTSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 245 ~~~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
.+...++.++|+...+ .++.+++..+.. ....... ..+++.++++.+|+.++.++++++|||++
T Consensus 79 ~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgGq 145 (224)
T 2pcj_A 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKE---AKERGEYLLSELGLGDKLSRKPYELSGGE 145 (224)
T ss_dssp HHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHH---HHHHHHHHHHHTTCTTCTTCCGGGSCHHH
T ss_pred HHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHH---HHHHHHHHHHHcCCchhhhCChhhCCHHH
Confidence 1112234444443222 244555543221 1122222 22344556666777888999999999964
No 10
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.65 E-value=4.5e-17 Score=146.37 Aligned_cols=131 Identities=18% Similarity=0.080 Sum_probs=84.9
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----h---h
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----H---E 244 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~---~ 244 (320)
.++++++++.| +...++++++|. |++++|+||||||||||+|+|+ |+++|++|+|.+++.+.. . .
T Consensus 7 ~l~i~~l~~~y----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (257)
T 1g6h_A 7 ILRTENIVKYF----GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVIT-GFLKADEGRVYFENKDITNKEPAELYH 81 (257)
T ss_dssp EEEEEEEEEEE----TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred EEEEeeeEEEE----CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 56777665444 445678888876 9999999999999999999999 999999999999864421 1 1
Q ss_pred hhcCcceeeeccccCCccccceeecCCCC-CCCH----------HhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 245 MESGRTSSVGNDILGFDSVGNVVNKPEHG-SLDW----------VKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 245 ~~~g~v~~~~~~~~~~~~~~~~v~~~~~~-~~~~----------~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
..+++++|.+.. +...++.+++..+... .... ....+..+++.++++.+|+.++.++++++|||++
T Consensus 82 ~~i~~v~q~~~l-~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq 158 (257)
T 1g6h_A 82 YGIVRTFQTPQP-LKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQ 158 (257)
T ss_dssp HTEEECCCCCGG-GGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHH
T ss_pred CCEEEEccCCcc-CCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHH
Confidence 124455544322 1123555555543221 1110 0001122344556666777888999999999964
No 11
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.65 E-value=3.7e-17 Score=153.44 Aligned_cols=128 Identities=14% Similarity=0.104 Sum_probs=85.4
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcce
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTS 251 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~ 251 (320)
++++++++.| +...+++++++. |++++|+||||||||||||+|+ |+++|++|+|.+++.+... ......++
T Consensus 4 l~~~~l~~~y----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia-Gl~~p~~G~I~i~g~~i~~~~~~~r~ig 78 (362)
T 2it1_A 4 IKLENIVKKF----GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIA-GIYKPTSGKIYFDEKDVTELPPKDRNVG 78 (362)
T ss_dssp EEEEEEEEES----SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH-TSSCCSEEEEEETTEECTTSCGGGTTEE
T ss_pred EEEEeEEEEE----CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHh-cCCCCCceEEEECCEECCcCCHhHCcEE
Confidence 5555554444 334567777765 9999999999999999999999 9999999999998654211 11123455
Q ss_pred eeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 252 SVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 252 ~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
.++|+...| .++.+++.++.. ......+. .+++.++++.+|+.++.+++|++|||++
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~---~~~v~~~l~~~~L~~~~~r~~~~LSGGq 138 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEI---DKKVREVAKMLHIDKLLNRYPWQLSGGQ 138 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHH---HHHHHHHHHHTTCTTCTTCCGGGSCHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHcCCchHhhCChhhCCHHH
Confidence 566654443 355666655421 12222222 3345556667777888999999999965
No 12
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.64 E-value=3.1e-17 Score=153.56 Aligned_cols=131 Identities=15% Similarity=0.114 Sum_probs=88.0
Q ss_pred eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-hhhhcCc
Q psy15138 174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-HEMESGR 249 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-~~~~~g~ 249 (320)
..++++++++.|. +...++++++|. |++++|+||||||||||||+|+ |+++|++|+|.+++.+.. .......
T Consensus 13 ~~l~~~~l~~~y~---g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia-Gl~~p~~G~I~i~g~~i~~~~~~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYP---GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIA-GLERPTKGDVWIGGKRVTDLPPQKRN 88 (355)
T ss_dssp EEEEEEEEEECCT---TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHH-TSSCCSEEEEEETTEECTTCCGGGSS
T ss_pred ceEEEEEEEEEEc---CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHh-CCCCCCccEEEECCEECCcCChhhCc
Confidence 3567776665552 234466677765 9999999999999999999999 999999999999865421 1111234
Q ss_pred ceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 250 TSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 250 v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
++.++|+...| .++.+++.++.. ......+. .+++.++++.+|+.++.+++|++|||++
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~---~~~v~~~l~~~gL~~~~~r~~~~LSGGq 150 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEM---DARVRELLRFMRLESYANRFPHELSGGQ 150 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHH---HHHHHHHHHHTTCGGGTTSCGGGSCHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHcCChhHhcCCcccCCHHH
Confidence 55566654443 355666655322 22232222 3445566667777889999999999964
No 13
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.64 E-value=4.5e-17 Score=152.61 Aligned_cols=128 Identities=13% Similarity=0.074 Sum_probs=86.7
Q ss_pred eeeeecCCCeeeeeccee--ccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch------hh
Q psy15138 176 LRQRKLDNGLTGQYLLRK--RVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK------HE 244 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~--~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~------~~ 244 (320)
++++++++.| +... ++++++|. |++++|+||||||||||||+|+ |+++|++|+|.+++.+.. ..
T Consensus 4 l~i~~l~~~y----~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia-Gl~~p~~G~I~i~g~~i~~~~~~~~~ 78 (353)
T 1oxx_K 4 IIVKNVSKVF----KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIA-GLDVPSTGELYFDDRLVASNGKLIVP 78 (353)
T ss_dssp EEEEEEEEEE----GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHH-TSSCCSEEEEEETTEEEEETTEESSC
T ss_pred EEEEeEEEEE----CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHh-CCCCCCceEEEECCEECcccccccCC
Confidence 4555554443 3344 67777775 9999999999999999999999 999999999999864421 11
Q ss_pred hhcCcceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 245 MESGRTSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 245 ~~~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
.....++.++|+...| .++.+++.++.. ......+. .+++.++++.+|+.++.+++|++|||++
T Consensus 79 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~---~~~v~~~l~~~~L~~~~~~~~~~LSGGq 145 (353)
T 1oxx_K 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEI---RKRVEEVAKILDIHHVLNHFPRELSGAQ 145 (353)
T ss_dssp GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHH---HHHHHHHHHHTTCGGGTTSCGGGSCHHH
T ss_pred hhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHcCCchHhcCChhhCCHHH
Confidence 1233456666665443 356666665432 22233322 3345556667777889999999999965
No 14
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.64 E-value=5.1e-17 Score=153.21 Aligned_cols=128 Identities=15% Similarity=0.086 Sum_probs=85.7
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-------hhh
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-------HEM 245 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-------~~~ 245 (320)
++++++++. |+...+++++++. |++++|+||||||||||||+|+ |+++|++|+|.+++.+.. ...
T Consensus 4 l~~~~l~~~----y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia-Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 78 (372)
T 1g29_1 4 VRLVDVWKV----FGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIA-GLEEPSRGQIYIGDKLVADPEKGIFVPP 78 (372)
T ss_dssp EEEEEEEEE----ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHH-TSSCCSEEEEEETTEEEEEGGGTEECCG
T ss_pred EEEEeEEEE----ECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHH-cCCCCCccEEEECCEECccccccccCCH
Confidence 556655444 4445677777775 9999999999999999999999 999999999999864321 111
Q ss_pred hcCcceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 246 ESGRTSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 246 ~~g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
....++.++|+...| .++.+++.++.. ......+.. +++.++++.+|+.++.+++|++|||++
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~r~~~~LSGGq 144 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEID---QRVREVAELLGLTELLNRKPRELSGGQ 144 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHH---HHHHHHHHHHTCGGGTTCCGGGSCHHH
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHCCCchHhcCCcccCCHHH
Confidence 123455556654433 355666655422 222333222 344556666677888999999999965
No 15
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.64 E-value=7.2e-17 Score=145.42 Aligned_cols=129 Identities=18% Similarity=0.108 Sum_probs=83.9
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-----hhhh
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-----HEME 246 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-----~~~~ 246 (320)
.++++++++.| +...++++++|. |++++|+||||||||||+|+|+ |+++|++|+|.+++.+.. ....
T Consensus 24 ~l~i~~l~~~y----~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~-Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 98 (263)
T 2olj_A 24 MIDVHQLKKSF----GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN-LLEDFDEGEIIIDGINLKAKDTNLNKV 98 (263)
T ss_dssp SEEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEETTEESSSTTCCHHHH
T ss_pred eEEEEeEEEEE----CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHH-cCCCCCCcEEEECCEECCCccccHHHH
Confidence 46777665544 345577777775 9999999999999999999999 999999999999864321 0011
Q ss_pred cCcceeeeccccCC--ccccceeecCC--CCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 247 SGRTSSVGNDILGF--DSVGNVVNKPE--HGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 247 ~g~v~~~~~~~~~~--~~~~~~v~~~~--~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
...++.++|+...+ .++.+++..+. ......... .+++.++++.+|+.++.++++.+|||++
T Consensus 99 ~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~---~~~~~~~l~~~~L~~~~~~~~~~LSgGq 164 (263)
T 2olj_A 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKA---EAKAMELLDKVGLKDKAHAYPDSLSGGQ 164 (263)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHH---HHHHHHHHHHTTCGGGTTSCGGGSCHHH
T ss_pred hCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHCCCchHhcCChhhCCHHH
Confidence 12234444443222 24555554421 112222222 2344556666777888999999999965
No 16
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.63 E-value=7.2e-17 Score=145.41 Aligned_cols=129 Identities=12% Similarity=0.063 Sum_probs=83.5
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---------
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK--------- 242 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~--------- 242 (320)
.++++++++.| +...++++++|. |++++|+||||||||||+|+|+ |+++|++|+|.+++.+..
T Consensus 6 ~l~i~~l~~~y----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 80 (262)
T 1b0u_A 6 KLHVIDLHKRY----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCIN-FLEKPSEGAIIVNGQNINLVRDKDGQL 80 (262)
T ss_dssp CEEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEETTEECCEEECTTSSE
T ss_pred eEEEeeEEEEE----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEECCEEccccccccccc
Confidence 46666665444 445567777775 9999999999999999999999 999999999999764321
Q ss_pred -----h--hhhcCcceeeeccccCC--ccccceeecCC--CCCCCHHhHHHHHHHHHHHhcccCCccc-cccccccccCC
Q psy15138 243 -----H--EMESGRTSSVGNDILGF--DSVGNVVNKPE--HGSLDWVKICERSAKVITFIDLAGHERY-LKTTVFGMTGH 310 (320)
Q Consensus 243 -----~--~~~~g~v~~~~~~~~~~--~~~~~~v~~~~--~~~~~~~~~~~~~~~~l~~l~l~gl~~~-~~~~~~~LSG~ 310 (320)
. ......++.++|+...+ .++.+++..+. ........ ..+++.++++.+|+.++ .++++++|||+
T Consensus 81 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~---~~~~~~~~l~~~~L~~~~~~~~~~~LSgG 157 (262)
T 1b0u_A 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHD---ARERALKYLAKVGIDERAQGKYPVHLSGG 157 (262)
T ss_dssp EESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHH---HHHHHHHHHHHTTCCHHHHTSCGGGSCHH
T ss_pred cccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHH---HHHHHHHHHHHcCCCchhhcCCcccCCHH
Confidence 0 01112244444443222 24555554421 11222222 22345556667777888 89999999996
Q ss_pred C
Q psy15138 311 V 311 (320)
Q Consensus 311 ~ 311 (320)
+
T Consensus 158 q 158 (262)
T 1b0u_A 158 Q 158 (262)
T ss_dssp H
T ss_pred H
Confidence 4
No 17
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.63 E-value=9.1e-17 Score=142.93 Aligned_cols=130 Identities=16% Similarity=0.071 Sum_probs=82.4
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhhhc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEMES 247 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~~~ 247 (320)
.++++++++.| +...+++++++. |++++|+||||||||||+|+|+ |+++|++|+|.+++.+.. .....
T Consensus 6 ~l~~~~l~~~y----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 80 (240)
T 1ji0_A 6 VLEVQSLHVYY----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIA-GLVRAQKGKIIFNGQDITNKPAHVINR 80 (240)
T ss_dssp EEEEEEEEEEE----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred eEEEEeEEEEE----CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCceEEECCEECCCCCHHHHHh
Confidence 46677665544 335567777775 9999999999999999999999 999999999999864421 11112
Q ss_pred CcceeeeccccCC--ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 248 GRTSSVGNDILGF--DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 248 g~v~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
..++.++|+...+ .++.+++..+...........+...++++.++ |+.++.++++++|||++
T Consensus 81 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~--~l~~~~~~~~~~LSgGq 144 (240)
T 1ji0_A 81 MGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFP--RLKERLKQLGGTLSGGE 144 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCH--HHHTTTTSBSSSSCHHH
T ss_pred CCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcc--cHhhHhcCChhhCCHHH
Confidence 2245555543332 25555555432111122222233444444442 35777889999999964
No 18
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.63 E-value=4.6e-16 Score=145.55 Aligned_cols=189 Identities=19% Similarity=0.153 Sum_probs=104.6
Q ss_pred CCccchhhhccceecCCCCch-hHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHHHHhhcCCCccccCccccccC
Q psy15138 33 ASPADHSMLQSKVGANAGIVG-MTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNCLIS 111 (320)
Q Consensus 33 ~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~~~~l~~~~~~~i~~kl~~~~ 111 (320)
++++|++++ |.+.+..... ...++|..|+..++|++||+||+||++.+.. +.+++|...+...++. +...+
T Consensus 128 ~anvD~v~i--v~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~-~~~~~~~~~y~~~G~~-----v~~~S 199 (358)
T 2rcn_A 128 AANIDQIVI--VSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGM-DFVNEQMDIYRNIGYR-----VLMVS 199 (358)
T ss_dssp EECCCEEEE--EEESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHH-HHHHHHHHHHHTTTCC-----EEECB
T ss_pred HhcCCEEEE--EEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhH-HHHHHHHHHHHhCCCc-----EEEEe
Confidence 789999988 7666532222 4446788899999999999999999987542 2233444433333332 21222
Q ss_pred -CchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeeeeec
Q psy15138 112 -PTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQYL 190 (320)
Q Consensus 112 -gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (320)
.+...+..+. .
T Consensus 200 a~~~~gl~~L~------------------------------------------~-------------------------- 211 (358)
T 2rcn_A 200 SHTQDGLKPLE------------------------------------------E-------------------------- 211 (358)
T ss_dssp TTTTBTHHHHH------------------------------------------H--------------------------
T ss_pred cCCCcCHHHHH------------------------------------------H--------------------------
Confidence 1111111110 0
Q ss_pred ceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCC-CCCceeeeccccchhhhhcCcceeeeccccCCccccceeec
Q psy15138 191 LRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELD-NGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNK 269 (320)
Q Consensus 191 ~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~-~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~v~~ 269 (320)
...|++++|+||||||||||+++|+ |... |..|.|........+......+..+++....+++.+... .
T Consensus 212 --------~~~G~~~~lvG~sG~GKSTLln~L~-g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e-~ 281 (358)
T 2rcn_A 212 --------ALTGRISIFAGQSGVGKSSLLNALL-GLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE-F 281 (358)
T ss_dssp --------HHTTSEEEEECCTTSSHHHHHHHHH-CCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHT-C
T ss_pred --------hcCCCEEEEECCCCccHHHHHHHHh-ccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHH-h
Confidence 0125679999999999999999999 9999 999999875211111111222333333322222111100 1
Q ss_pred CCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 270 PEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
.. ..+... +....+.++++.+|+.++.+..+.++||++
T Consensus 282 ~l-~~l~~~---e~~~~~~e~l~~~gl~~f~~~~~~~lSG~~ 319 (358)
T 2rcn_A 282 GL-WHLEPE---QITQGFVEFHDYLGHCKYRDCKHDADPGCA 319 (358)
T ss_dssp CC-CCCCHH---HHHHTSGGGGGGTTCSSSTTCCSSSCTTCH
T ss_pred hh-cCCCHH---HHHHHHHHHHHHcCCchhcCCCcccCCHHH
Confidence 11 122222 223445677788888999999999999754
No 19
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.63 E-value=7.3e-17 Score=144.87 Aligned_cols=131 Identities=12% Similarity=0.028 Sum_probs=85.0
Q ss_pred eeeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh--hhhc
Q psy15138 173 CVLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH--EMES 247 (320)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~--~~~~ 247 (320)
+..++++++++.| +...++++++|. |++++|+||||||||||+|+|+ |+++|++|+|.+++.+... ....
T Consensus 13 ~~~l~i~~l~~~y----~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~-Gl~~p~~G~I~~~g~~~~~~~~~~~ 87 (256)
T 1vpl_A 13 MGAVVVKDLRKRI----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIS-TLIKPSSGIVTVFGKNVVEEPHEVR 87 (256)
T ss_dssp -CCEEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEETTEETTTCHHHHH
T ss_pred CCeEEEEEEEEEE----CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEECCEECCccHHHHh
Confidence 3567777766554 345567777775 9999999999999999999999 9999999999998644211 1112
Q ss_pred CcceeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 248 GRTSSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 248 g~v~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
..++.++|....+ .++.+++..... ........ .+++.++++.+|+.++.++++++|||++
T Consensus 88 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~---~~~~~~~l~~~gL~~~~~~~~~~LSgGq 151 (256)
T 1vpl_A 88 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEI---EEMVERATEIAGLGEKIKDRVSTYSKGM 151 (256)
T ss_dssp TTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHH---HHHHHHHHHHHCCGGGGGSBGGGCCHHH
T ss_pred hcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHH---HHHHHHHHHHCCCchHhcCChhhCCHHH
Confidence 3455555553322 244455443211 11122221 2334455666677888999999999964
No 20
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.62 E-value=1.6e-16 Score=144.43 Aligned_cols=132 Identities=16% Similarity=0.069 Sum_probs=84.9
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch-----hhhh
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK-----HEME 246 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~-----~~~~ 246 (320)
.++++++++.| +...++++++|. |++++|+||||||||||+|+|+ |+++|++|+|.+++.+.. ....
T Consensus 21 ~l~~~~l~~~y----~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~-Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 95 (279)
T 2ihy_A 21 LIQLDQIGRMK----QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILN-AYEPATSGTVNLFGKMPGKVGYSAETV 95 (279)
T ss_dssp EEEEEEEEEEE----TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEETTBCCC---CCHHHH
T ss_pred eEEEEeEEEEE----CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHh-CCCCCCCeEEEECCEEcccccCCHHHH
Confidence 57777765544 445677777775 9999999999999999999999 999999999999864321 1111
Q ss_pred cCcceeeeccccC-C---ccccceeecCCCCC--CCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 247 SGRTSSVGNDILG-F---DSVGNVVNKPEHGS--LDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 247 ~g~v~~~~~~~~~-~---~~~~~~v~~~~~~~--~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
...++.++|+... + .++.+++..+.... .......+..+++.++++.+|+.++.++++.+|||++
T Consensus 96 ~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq 166 (279)
T 2ihy_A 96 RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGE 166 (279)
T ss_dssp HTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHH
T ss_pred cCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHH
Confidence 2334555554321 2 25666665532110 0000001123345566667777888999999999965
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.61 E-value=1.9e-16 Score=143.04 Aligned_cols=116 Identities=18% Similarity=0.133 Sum_probs=75.6
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccc---cCCccccc
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDI---LGFDSVGN 265 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~---~~~~~~~~ 265 (320)
..+++++++. |++++|+||||||||||+|+|+ |+++|++|+|.+++.+.........++.++|+. +...++.+
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~-Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e 98 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVA-GLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFD 98 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh-CCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHH
Confidence 3467777765 9999999999999999999999 999999999999864421111122344444442 22235556
Q ss_pred eeecCCCCCCCHHhHHHHHHHHHHHhcccCCc--cccccccccccCCC
Q psy15138 266 VVNKPEHGSLDWVKICERSAKVITFIDLAGHE--RYLKTTVFGMTGHV 311 (320)
Q Consensus 266 ~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~--~~~~~~~~~LSG~~ 311 (320)
++..+........... +++.++++.+|+. ++.++++++|||++
T Consensus 99 nl~~~~~~~~~~~~~~---~~~~~~l~~~gl~~~~~~~~~~~~LSgGq 143 (266)
T 2yz2_A 99 EVAFAVKNFYPDRDPV---PLVKKAMEFVGLDFDSFKDRVPFFLSGGE 143 (266)
T ss_dssp HHHHTTTTTCTTSCSH---HHHHHHHHHTTCCHHHHTTCCGGGSCHHH
T ss_pred HHHHHHHhcCCHHHHH---HHHHHHHHHcCcCCcccccCChhhCCHHH
Confidence 6554322111111112 2344555667778 88899999999964
No 22
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.60 E-value=7.3e-17 Score=150.78 Aligned_cols=112 Identities=13% Similarity=0.077 Sum_probs=75.7
Q ss_pred ccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh-hhhcCcceeeeccccCC--cccccee
Q psy15138 194 RVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH-EMESGRTSSVGNDILGF--DSVGNVV 267 (320)
Q Consensus 194 ~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~-~~~~g~v~~~~~~~~~~--~~~~~~v 267 (320)
+++++++. |++++|+||||||||||||+|+ |+++|++|+|.+++.+... ......++.++|+...| .++.+++
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia-Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl 93 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIA-GFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNL 93 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHH-TSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHH-cCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHH
Confidence 66667665 9999999999999999999999 9999999999998654211 11112345555554333 3555665
Q ss_pred ecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 268 NKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 268 ~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.++.. ...... +++.++++.+|+.++.+++|++|||++.
T Consensus 94 ~~~~~~~~~~~~------~~v~~~l~~~~L~~~~~~~~~~LSgGq~ 133 (348)
T 3d31_A 94 EFGMRMKKIKDP------KRVLDTARDLKIEHLLDRNPLTLSGGEQ 133 (348)
T ss_dssp HHHHHHHCCCCH------HHHHHHHHHTTCTTTTTSCGGGSCHHHH
T ss_pred HHHHHHcCCCHH------HHHHHHHHHcCCchHhcCChhhCCHHHH
Confidence 54321 111111 3445566667778889999999999653
No 23
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.60 E-value=2.3e-15 Score=138.18 Aligned_cols=66 Identities=18% Similarity=0.228 Sum_probs=48.2
Q ss_pred CceEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCc--hhHHHHHHHHHHcCCCcEEEEeCCCCCChhH
Q psy15138 14 NAASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIV--GMTKEHLGLALALSVPVFVVVTKIDMCPPNV 83 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~ 83 (320)
+...+.|+ ||||..+ .-..++|.+++ |++++++.. ....+.+..++..++|+++|+||+|+.+...
T Consensus 63 ~~~~iwD~--qer~~~l~~~~~~~ad~vil--V~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~ 132 (301)
T 1u0l_A 63 GSGVIENV--LHRKNLLTKPHVANVDQVIL--VVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDD 132 (301)
T ss_dssp SSEEEEEE--CCCSCEETTTTEESCCEEEE--EECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHH
T ss_pred CeEEEEEE--ccccceeeccccccCCEEEE--EEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchh
Confidence 46778899 9999922 23667888877 999997652 2334456666667889999999999987543
No 24
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.57 E-value=3.5e-16 Score=136.76 Aligned_cols=124 Identities=16% Similarity=0.102 Sum_probs=79.3
Q ss_pred eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcc
Q psy15138 174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRT 250 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v 250 (320)
..++++++++.| +. .++++++|. |++++|+||||||||||+|+|+ |+++|++|+|.+++.+.. . ....+
T Consensus 9 ~~l~~~~ls~~y----~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~-Gl~~p~~G~I~~~g~~~~-~-~~~~i 80 (214)
T 1sgw_A 9 SKLEIRDLSVGY----DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIS-TYLKPLKGEIIYNGVPIT-K-VKGKI 80 (214)
T ss_dssp CEEEEEEEEEES----SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEETTEEGG-G-GGGGE
T ss_pred ceEEEEEEEEEe----CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCeEEEECCEEhh-h-hcCcE
Confidence 356677665544 33 567777765 9999999999999999999999 999999999999865422 1 12334
Q ss_pred eeeeccccCC--ccccceeecCCC-CCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 251 SSVGNDILGF--DSVGNVVNKPEH-GSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 251 ~~~~~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
+.++|+...+ .++.+++..... .... .. .++ +.++++.+|+.+. ++++.+|||++
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~-~~-~~~---~~~~l~~~gl~~~-~~~~~~LSgGq 138 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVK-VN-KNE---IMDALESVEVLDL-KKKLGELSQGT 138 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCC-CC-HHH---HHHHHHHTTCCCT-TSBGGGSCHHH
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCc-hH-HHH---HHHHHHHcCCCcC-CCChhhCCHHH
Confidence 4555543322 244454443211 1111 11 223 3344555666777 88999999964
No 25
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.57 E-value=1e-15 Score=136.77 Aligned_cols=120 Identities=14% Similarity=0.070 Sum_probs=77.5
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch------hhh
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK------HEM 245 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~------~~~ 245 (320)
+++++++++. .+++++++. |++++|+||||||||||+|+|+ |+++|+ |+|.+++.+.. ...
T Consensus 4 ~l~~~~l~~~--------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~-Gl~~p~-G~i~~~g~~~~~~~~~~~~~ 73 (249)
T 2qi9_C 4 VMQLQDVAES--------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMA-GMTSGK-GSIQFAGQPLEAWSATKLAL 73 (249)
T ss_dssp EEEEEEEEET--------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHT-TSSCCE-EEEEETTEEGGGSCHHHHHH
T ss_pred EEEEEceEEE--------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh-CCCCCC-eEEEECCEECCcCCHHHHhc
Confidence 3555655433 355666664 9999999999999999999999 999999 99999864421 112
Q ss_pred hcCcceeeeccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 246 ESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 246 ~~g~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
.+++++|.+.. +...++.+++..+...... . +++.++++.+|+.++.++.+.+|||++.
T Consensus 74 ~i~~v~q~~~~-~~~~tv~e~l~~~~~~~~~----~---~~~~~~l~~~~l~~~~~~~~~~LSgGq~ 132 (249)
T 2qi9_C 74 HRAYLSQQQTP-PFATPVWHYLTLHQHDKTR----T---ELLNDVAGALALDDKLGRSTNQLSGGEW 132 (249)
T ss_dssp HEEEECSCCCC-CTTCBHHHHHHTTCSSTTC----H---HHHHHHHHHTTCGGGTTSBGGGCCHHHH
T ss_pred eEEEECCCCcc-CCCCcHHHHHHHhhccCCc----H---HHHHHHHHHcCChhHhcCChhhCCHHHH
Confidence 24455444332 1112555555543211111 2 2344555666778888999999999653
No 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.56 E-value=5.2e-16 Score=139.06 Aligned_cols=121 Identities=18% Similarity=0.085 Sum_probs=78.9
Q ss_pred eeeeeecCCCeeeeec-ceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcc
Q psy15138 175 LLRQRKLDNGLTGQYL-LRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRT 250 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v 250 (320)
.++++++++.| + ...+++++++. |++++|+||||||||||+++|+ |+++|++|+|... ..++++
T Consensus 4 ~l~i~~l~~~y----~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~p~~G~I~~~-------~~i~~v 71 (253)
T 2nq2_C 4 ALSVENLGFYY----QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLL-GIHRPIQGKIEVY-------QSIGFV 71 (253)
T ss_dssp EEEEEEEEEEE----TTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHT-TSSCCSEEEEEEC-------SCEEEE
T ss_pred eEEEeeEEEEe----CCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEEe-------ccEEEE
Confidence 35666655444 3 34567777775 9999999999999999999999 9999999999831 124555
Q ss_pred eeeeccccCCccccceeecCCCC--C---CCHHhHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 251 SSVGNDILGFDSVGNVVNKPEHG--S---LDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 251 ~~~~~~~~~~~~~~~~v~~~~~~--~---~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
+|.+..+. ..++.+++..+... . ..... ..+++.++++.+|+.++.++++++|||++
T Consensus 72 ~q~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgGq 133 (253)
T 2nq2_C 72 PQFFSSPF-AYSVLDIVLMGRSTHINTFAKPKSH---DYQVAMQALDYLNLTHLAKREFTSLSGGQ 133 (253)
T ss_dssp CSCCCCSS-CCBHHHHHHGGGGGGSCTTCCCCHH---HHHHHHHHHHHTTCGGGTTSBGGGSCHHH
T ss_pred cCCCccCC-CCCHHHHHHHhhhhhcccccCCCHH---HHHHHHHHHHHcCChHHhcCChhhCCHHH
Confidence 54432221 22455555443211 1 01111 12344556666777888899999999964
No 27
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.56 E-value=1.7e-15 Score=134.70 Aligned_cols=104 Identities=18% Similarity=0.163 Sum_probs=69.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch----hhhhcCcceeeeccccCCccccceeecCCCCCCCHH
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK----HEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWV 278 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~----~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 278 (320)
++++|+||||||||||+|+|+ |+++|++|+|.+++.+.. ....+|+++|.+.. +...++.+++..+... ....
T Consensus 25 e~~~liG~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l-~~~ltv~enl~~~~~~-~~~~ 101 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIA-GIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYAL-FPHLSVYRNIAYGLRN-VERV 101 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHH-TSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCC-CTTSCHHHHHHTTCTT-SCHH
T ss_pred EEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEECCEECCcCchhhCcEEEEcCCCcc-CCCCcHHHHHHHHHHH-cCCc
Confidence 889999999999999999999 999999999999864421 11224455444321 1122455555543321 1211
Q ss_pred hHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 279 KICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 279 ~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
. ..+++.++++.+|+.++.++++++|||++.
T Consensus 102 ~---~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk 132 (240)
T 2onk_A 102 E---RDRRVREMAEKLGIAHLLDRKPARLSGGER 132 (240)
T ss_dssp H---HHHHHHHHHHTTTCTTTTTCCGGGSCHHHH
T ss_pred h---HHHHHHHHHHHcCCHHHhcCChhhCCHHHH
Confidence 1 134455667777888889999999999653
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.55 E-value=1.6e-15 Score=137.24 Aligned_cols=135 Identities=17% Similarity=0.132 Sum_probs=82.7
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g 248 (320)
.++++++++.|... ....++++++|. |++++|+||||||||||+|+|+ |+++|++|+|.+++.+.. ......
T Consensus 16 ~l~~~~l~~~y~~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~-Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH-PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ-NLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CEEEEEEEECCTTC-TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred eEEEEEEEEEeCCC-CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 57777776665321 013466666665 9999999999999999999999 999999999999864421 111112
Q ss_pred cceeeeccccCC-ccccceeecCCCCCCCHHhHHHH--HHHHHHHhccc--CCccccccccccccCCC
Q psy15138 249 RTSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICER--SAKVITFIDLA--GHERYLKTTVFGMTGHV 311 (320)
Q Consensus 249 ~v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~--~~~~l~~l~l~--gl~~~~~~~~~~LSG~~ 311 (320)
.++.++|+...| .++.+++.++......+....+. ...+.++++.+ |+..+.++++.+|||++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq 161 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQ 161 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHH
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHH
Confidence 234444443222 35566665543221111221111 12233445444 66778889999999964
No 29
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.54 E-value=1e-14 Score=133.97 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=44.9
Q ss_pred Ccchhh--ccCCCCccchhhhccceecCCCCc-h-hHHHHHHHHHHcCCCcEEEEeCCCCCChh
Q psy15138 23 IHERDD--DLPEASPADHSMLQSKVGANAGIV-G-MTKEHLGLALALSVPVFVVVTKIDMCPPN 82 (320)
Q Consensus 23 gh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~-~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~ 82 (320)
+|+||. .=+-+.++|.+++ |++++++.. . ...+.+..++..++|+++|+||+|+.+..
T Consensus 65 i~er~~~l~r~~~~naD~vli--V~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~ 126 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVII--VETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEE 126 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEE--EECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHH
T ss_pred eCChHHHHhHHHHHhcCEEEE--EEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCcc
Confidence 488888 2234788999988 999997653 2 33467777888899999999999998764
No 30
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.53 E-value=9.6e-16 Score=137.11 Aligned_cols=129 Identities=20% Similarity=0.159 Sum_probs=76.9
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCc--CCCCCceeeeccccch----hh-
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGE--LDNGRGHARQKLFRHK----HE- 244 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~--l~~~~G~i~~~~~~~~----~~- 244 (320)
.++++++++.| +...++++++|. |++++|+||||||||||+|+|+ |+ ++|++|+|.+++.+.. ..
T Consensus 3 ~l~~~~l~~~y----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~-Gl~~~~p~~G~I~~~g~~~~~~~~~~~ 77 (250)
T 2d2e_A 3 QLEIRDLWASI----DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILA-GDPEYTVERGEILLDGENILELSPDER 77 (250)
T ss_dssp EEEEEEEEEEE----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHH-TCTTCEEEEEEEEETTEECTTSCHHHH
T ss_pred eEEEEeEEEEE----CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCceEEEECCEECCCCCHHHH
Confidence 35666655444 445677777775 9999999999999999999999 98 7899999999864421 11
Q ss_pred --hhcCcceeeeccccCCccccceeecCCC---C-CCCHHhHHHHHHHHHHHhcccCC-cccccccccc-ccCCCC
Q psy15138 245 --MESGRTSSVGNDILGFDSVGNVVNKPEH---G-SLDWVKICERSAKVITFIDLAGH-ERYLKTTVFG-MTGHVP 312 (320)
Q Consensus 245 --~~~g~v~~~~~~~~~~~~~~~~v~~~~~---~-~~~~~~~~~~~~~~l~~l~l~gl-~~~~~~~~~~-LSG~~~ 312 (320)
..+++++|.+..+.. .++.+++..... . .....+ ..+++.++++.+|+ .++.++++++ |||++.
T Consensus 78 ~~~~i~~v~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqk 149 (250)
T 2d2e_A 78 ARKGLFLAFQYPVEVPG-VTIANFLRLALQAKLGREVGVAE---FWTKVKKALELLDWDESYLSRYLNEGFSGGEK 149 (250)
T ss_dssp HHTTBCCCCCCCC-CCS-CBHHHHHHHHHHHHHTSCCCHHH---HHHHHHHHHHHHTCCGGGGGSBTTCC----HH
T ss_pred HhCcEEEeccCCccccC-CCHHHHHHHHHHhhccccCCHHH---HHHHHHHHHHHcCCChhHhcCCcccCCCHHHH
Confidence 123455554332211 234444433210 1 111122 22344556666777 4778899998 999753
No 31
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.52 E-value=1.4e-15 Score=139.66 Aligned_cols=132 Identities=17% Similarity=0.147 Sum_probs=80.3
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g 248 (320)
.++++++++.|.. ...++++++|. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. ....+.
T Consensus 53 ~i~~~~vs~~y~~---~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~-gl~~p~~G~I~i~G~~i~~~~~~~~r~ 128 (306)
T 3nh6_A 53 RIEFENVHFSYAD---GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF-RFYDISSGCIRIDGQDISQVTQASLRS 128 (306)
T ss_dssp CEEEEEEEEESST---TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHT-TSSCCSEEEEEETTEETTSBCHHHHHH
T ss_pred eEEEEEEEEEcCC---CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHH-cCCCCCCcEEEECCEEcccCCHHHHhc
Confidence 4677777666632 24467777765 9999999999999999999999 999999999999865421 111223
Q ss_pred cceeeeccccCC-ccccceeecCCCCCCCHHhHHHHH--HHHHHHhccc--CCccccccccccccCCC
Q psy15138 249 RTSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICERS--AKVITFIDLA--GHERYLKTTVFGMTGHV 311 (320)
Q Consensus 249 ~v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~--~~~l~~l~l~--gl~~~~~~~~~~LSG~~ 311 (320)
.++.++|+...| .++.+++.++... .......+.. ..+.++++.. |+.........+|||++
T Consensus 129 ~i~~v~Q~~~lf~~Tv~eNi~~~~~~-~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGq 195 (306)
T 3nh6_A 129 HIGVVPQDTVLFNDTIADNIRYGRVT-AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGE 195 (306)
T ss_dssp TEEEECSSCCCCSEEHHHHHHTTSTT-CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHH
T ss_pred ceEEEecCCccCcccHHHHHHhhccc-CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHH
Confidence 455555554444 3556666654322 1222211111 1111222211 44455566678999964
No 32
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.51 E-value=3.1e-15 Score=133.54 Aligned_cols=63 Identities=14% Similarity=0.080 Sum_probs=49.0
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR 240 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~ 240 (320)
-++++++++.|.. +...+++++++. |++++|+||||||||||+|+|+ |+++|++|+|.+++.+
T Consensus 7 ~~~~~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~I~i~g~~ 72 (247)
T 2ff7_A 7 DITFRNIRFRYKP--DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RFYIPENGQVLIDGHD 72 (247)
T ss_dssp EEEEEEEEEESST--TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEETTEE
T ss_pred ceeEEEEEEEeCC--CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEECCEE
Confidence 3455655544410 124567777775 9999999999999999999999 9999999999998644
No 33
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.51 E-value=1.3e-14 Score=129.21 Aligned_cols=128 Identities=15% Similarity=0.092 Sum_probs=75.0
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchh---hhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH---EMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~---~~~~g~ 249 (320)
++++++++.|. +...+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+... ......
T Consensus 2 l~~~~l~~~y~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T 1mv5_A 2 LSARHVDFAYD---DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE-RFYQPTAGEITIDGQPIDNISLENWRSQ 77 (243)
T ss_dssp EEEEEEEECSS---SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHT-TSSCCSBSCEEETTEESTTTSCSCCTTT
T ss_pred EEEEEEEEEeC---CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCcEEEECCEEhhhCCHHHHHhh
Confidence 45566555552 223466666665 9999999999999999999999 9999999999998643211 111223
Q ss_pred ceeeeccccCC-ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccC--------CccccccccccccCCC
Q psy15138 250 TSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAG--------HERYLKTTVFGMTGHV 311 (320)
Q Consensus 250 v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~g--------l~~~~~~~~~~LSG~~ 311 (320)
++.++|+...| .++.+++..+....... +...++++.+++.+ +....+..+.+|||++
T Consensus 78 i~~v~q~~~l~~~tv~enl~~~~~~~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq 144 (243)
T 1mv5_A 78 IGFVSQDSAIMAGTIRENLTYGLEGDYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQ 144 (243)
T ss_dssp CCEECCSSCCCCEEHHHHTTSCTTSCSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHH
T ss_pred EEEEcCCCccccccHHHHHhhhccCCCCH----HHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHH
Confidence 44444443322 24555554432111111 22334444444322 2223345678999964
No 34
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.47 E-value=8.4e-15 Score=131.89 Aligned_cols=128 Identities=16% Similarity=0.151 Sum_probs=75.0
Q ss_pred eeeeecCCCeeeeecceeccccCCcc--CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcce-e
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL--EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTS-S 252 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~--g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~-~ 252 (320)
++++++++.|........+++++++. |++++|+||||||||||+|+|+ |++ |++|+|.+++.+.........++ .
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~-Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~ 79 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAIS-GLL-PYSGNIFINGMEVRKIRNYIRYSTN 79 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHT-TSS-CCEEEEEETTEEGGGCSCCTTEEEC
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHh-CCC-CCCcEEEECCEECcchHHhhheEEE
Confidence 34555554443210003455555544 9999999999999999999999 999 99999999764321100122233 3
Q ss_pred eeccccCCccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCC
Q psy15138 253 VGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHV 311 (320)
Q Consensus 253 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~ 311 (320)
++|+.....++.+++....... . . ..+++.++++.+|+. +..++++++|||++
T Consensus 80 v~Q~~~l~~tv~enl~~~~~~~-~--~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq 133 (263)
T 2pjz_A 80 LPEAYEIGVTVNDIVYLYEELK-G--L---DRDLFLEMLKALKLGEEILRRKLYKLSAGQ 133 (263)
T ss_dssp CGGGSCTTSBHHHHHHHHHHHT-C--C---CHHHHHHHHHHTTCCGGGGGSBGGGSCHHH
T ss_pred eCCCCccCCcHHHHHHHhhhhc-c--h---HHHHHHHHHHHcCCChhHhcCChhhCCHHH
Confidence 4443221223444443321000 0 0 112344555566777 88899999999964
No 35
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.46 E-value=6.7e-14 Score=128.50 Aligned_cols=122 Identities=19% Similarity=0.250 Sum_probs=71.4
Q ss_pred CCCccchhhhccceecCCCCch--hHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHHHHhhcCCCccccCccccc
Q psy15138 32 EASPADHSMLQSKVGANAGIVG--MTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNCL 109 (320)
Q Consensus 32 ~~~~~d~~~l~~vv~a~~g~~~--~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~~~~l~~~~~~~i~~kl~~ 109 (320)
.++++|++++ |+++..|... ...+.|..|+..++|+++|+||+||.+.+..++.++++.+.+...++. +..
T Consensus 83 ~~anvD~v~~--V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~-----v~~ 155 (307)
T 1t9h_A 83 PICNVDQAVL--VFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD-----VYL 155 (307)
T ss_dssp TEECCCEEEE--EEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC-----EEE
T ss_pred HHHhCCEEEE--EEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCe-----EEE
Confidence 4899999999 9999977654 444677888889999999999999987754222334444432211221 111
Q ss_pred cCCchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeeeee
Q psy15138 110 ISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQY 189 (320)
Q Consensus 110 ~~gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (320)
.+.. ...+..+
T Consensus 156 ~sa~--------------~~~g~~~------------------------------------------------------- 166 (307)
T 1t9h_A 156 TSSK--------------DQDSLAD------------------------------------------------------- 166 (307)
T ss_dssp CCHH--------------HHTTCTT-------------------------------------------------------
T ss_pred EecC--------------CCCCHHH-------------------------------------------------------
Confidence 1100 0000000
Q ss_pred cceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeee
Q psy15138 190 LLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQ 236 (320)
Q Consensus 190 ~~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~ 236 (320)
... ...|++++|+||||+|||||+|+|. |..+|..|.+..
T Consensus 167 -L~~-----~~~G~~~~lvG~sG~GKSTLln~L~-g~~~~~~G~I~~ 206 (307)
T 1t9h_A 167 -IIP-----HFQDKTTVFAGQSGVGKSSLLNAIS-PELGLRTNEISE 206 (307)
T ss_dssp -TGG-----GGTTSEEEEEESHHHHHHHHHHHHC-C-----------
T ss_pred -HHh-----hcCCCEEEEECCCCCCHHHHHHHhc-ccccccccceee
Confidence 000 0137789999999999999999999 999999999987
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.46 E-value=1.4e-14 Score=128.47 Aligned_cols=60 Identities=32% Similarity=0.344 Sum_probs=47.0
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL 238 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~ 238 (320)
++++++++.|.. ....+++++++. |++++|+||||||||||+|+|+ |+++|++|+|.+++
T Consensus 4 l~~~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~I~~~g 66 (237)
T 2cbz_A 4 ITVRNATFTWAR--SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALL-AEMDKVEGHVAIKG 66 (237)
T ss_dssp EEEEEEEEESCT--TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHT-TCSEEEEEEEEECS
T ss_pred EEEEEEEEEeCC--CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCceEEECC
Confidence 566666544421 023456666665 9999999999999999999999 99999999999864
No 37
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.46 E-value=1.3e-14 Score=137.52 Aligned_cols=125 Identities=15% Similarity=0.131 Sum_probs=81.1
Q ss_pred eeeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhc
Q psy15138 174 VLLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMES 247 (320)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~ 247 (320)
..++++++++.|.. +...+++++++. |++++|+||||||||||||+|+ |+++ ++|+|.+++.+.. .....
T Consensus 18 ~~i~~~~l~~~y~~--~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~ia-Gl~~-~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE--GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLN-TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp CCEEEEEEEEESSS--SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHH-TCSE-EEEEEEESSCBTTSSCHHHHH
T ss_pred CeEEEEEEEEEecC--CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHh-CCCC-CCeEEEECCEECCcCChHHHh
Confidence 34677766655521 234567777765 9999999999999999999999 9998 8999999865421 11112
Q ss_pred CcceeeeccccCC-ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCcccccccccc-----------ccCCC
Q psy15138 248 GRTSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFG-----------MTGHV 311 (320)
Q Consensus 248 g~v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~-----------LSG~~ 311 (320)
..++.++|+...| .++.+++... .... . +++.++++.+++.++.+++|.+ |||++
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~--~~~~----~---~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGq 160 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPN--AAHS----D---QEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGH 160 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTT--CCSC----H---HHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHH
T ss_pred CCEEEEcCCcccCccCHHHHhhhc--cccC----H---HHHHHHHHHhCCHHHHhhcccccccccccccccCCHHH
Confidence 2345555554443 2444444321 1111 1 2334556667778888999998 99964
No 38
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.44 E-value=3e-14 Score=128.58 Aligned_cols=129 Identities=17% Similarity=0.099 Sum_probs=77.5
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCc--CCCCCceeeeccccch----hhh
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGE--LDNGRGHARQKLFRHK----HEM 245 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~--l~~~~G~i~~~~~~~~----~~~ 245 (320)
.++++++++.| +...++++++|. |++++|+||||||||||+|+|+ |+ ++|++|+|.+++.+.. ...
T Consensus 20 ~l~~~~l~~~y----~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~-Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 94 (267)
T 2zu0_C 20 MLSIKDLHVSV----EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLA-GREDYEVTGGTVEFKGKDLLALSPEDR 94 (267)
T ss_dssp CEEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH-TCTTCEEEEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEeEEEEE----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 56777766544 345567777775 9999999999999999999999 99 4689999999865421 111
Q ss_pred hcCcceeeeccccCCc--cccceeecCC-------C-CCCCHHhHHHHHHHHHHHhcccCCc-cccccccc-cccCCC
Q psy15138 246 ESGRTSSVGNDILGFD--SVGNVVNKPE-------H-GSLDWVKICERSAKVITFIDLAGHE-RYLKTTVF-GMTGHV 311 (320)
Q Consensus 246 ~~g~v~~~~~~~~~~~--~~~~~v~~~~-------~-~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~-~LSG~~ 311 (320)
....++.++|+...+. ++.+++.... . ......+. .+++.++++.+|+. ++.++++. +|||++
T Consensus 95 ~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq 169 (267)
T 2zu0_C 95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDF---QDLMEEKIALLKMPEDLLTRSVNVGFSGGE 169 (267)
T ss_dssp HHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHH---HHHHHHHHHHTTCCTTTTTSBTTTTCCHHH
T ss_pred hhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHH---HHHHHHHHHHcCCChhHhcCCcccCCCHHH
Confidence 1112344444432221 2222222110 0 01122222 23444566667775 56788887 599965
No 39
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.42 E-value=5.5e-14 Score=124.00 Aligned_cols=61 Identities=21% Similarity=0.251 Sum_probs=48.9
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL 238 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~ 238 (320)
.++++++++.|.. +...+++++++. |++++|+||||||||||+|+|+ |+++|++|+|.+++
T Consensus 6 ~l~~~~l~~~y~~--~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g 69 (229)
T 2pze_A 6 EVVMENVTAFWEE--GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIM-GELEPSEGKIKHSG 69 (229)
T ss_dssp EEEEEEEEECSST--TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHT-TSSCCSEEEEEECS
T ss_pred eEEEEEEEEEeCC--CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCcCCccEEEECC
Confidence 4677777666531 123466666665 9999999999999999999999 99999999999864
No 40
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.40 E-value=8.5e-14 Score=125.12 Aligned_cols=93 Identities=17% Similarity=0.177 Sum_probs=60.8
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g 248 (320)
.++++++++.|.... ...+++++++. |++++|+||||||||||+++|+ |+++| +|+|.+++.+.. ......
T Consensus 17 ~l~i~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~-Gl~~~-~G~I~i~g~~i~~~~~~~~~~ 93 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQT-NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RFYDA-EGDIKIGGKNVNKYNRNSIRS 93 (260)
T ss_dssp CEEEEEEEECCTTCC-SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHT-TSSCC-EEEEEETTEEGGGBCHHHHHT
T ss_pred eEEEEEEEEEeCCCC-cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHh-ccCCC-CeEEEECCEEhhhcCHHHHhc
Confidence 467777766663210 12456666665 9999999999999999999999 99987 899999864421 111123
Q ss_pred cceeeeccccCC-ccccceeecC
Q psy15138 249 RTSSVGNDILGF-DSVGNVVNKP 270 (320)
Q Consensus 249 ~v~~~~~~~~~~-~~~~~~v~~~ 270 (320)
.++.++|+...| .++.+++.++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~ 116 (260)
T 2ghi_A 94 IIGIVPQDTILFNETIKYNILYG 116 (260)
T ss_dssp TEEEECSSCCCCSEEHHHHHHTT
T ss_pred cEEEEcCCCcccccCHHHHHhcc
Confidence 445555554333 2455555443
No 41
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.40 E-value=1.2e-13 Score=137.63 Aligned_cols=93 Identities=18% Similarity=0.203 Sum_probs=64.2
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g 248 (320)
.++++++++.|... ...+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. ....+.
T Consensus 341 ~i~~~~v~~~y~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~-g~~~p~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b5x_A 341 EVDVKDVTFTYQGK--EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFT-RFYDVDSGSICLDGHDVRDYKLTNLRR 417 (582)
T ss_pred eEEEEEEEEEcCCC--CccccccceEEECCCCEEEEECCCCCCHHHHHHHHh-cCCCCCCCEEEECCEEhhhCCHHHHhc
Confidence 35666665555321 14567777775 9999999999999999999999 999999999999865421 112234
Q ss_pred cceeeeccccCC-ccccceeecC
Q psy15138 249 RTSSVGNDILGF-DSVGNVVNKP 270 (320)
Q Consensus 249 ~v~~~~~~~~~~-~~~~~~v~~~ 270 (320)
.++.++|+...| .++.+++..+
T Consensus 418 ~i~~v~Q~~~l~~~tv~eni~~~ 440 (582)
T 3b5x_A 418 HFALVSQNVHLFNDTIANNIAYA 440 (582)
T ss_pred CeEEEcCCCccccccHHHHHhcc
Confidence 455666655443 3556666554
No 42
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.40 E-value=4.1e-13 Score=126.65 Aligned_cols=111 Identities=12% Similarity=0.038 Sum_probs=88.1
Q ss_pred CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCc-EEEEe-CCCCCChhHHHHH
Q psy15138 12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPV-FVVVT-KIDMCPPNVLQDT 87 (320)
Q Consensus 12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~-~v~ln-k~Dl~~~~~le~~ 87 (320)
.+..+.|+|+|||++|+ |+.+...+|.+++ |++ ++|+++||++|+.+++.+++|. ++++| |+|+ +.+++++.
T Consensus 58 ~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ail--Vvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~ 133 (370)
T 2elf_A 58 EGRNMVFVDAHSYPKTLKSLITALNISDIAVL--CIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDEL 133 (370)
T ss_dssp SSSEEEEEECTTTTTCHHHHHHHHHTCSEEEE--EEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHH
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHCCEEEE--EEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHH
Confidence 45679999999999998 8999999999999 999 9999999999999999999987 88999 9999 88888888
Q ss_pred HHHHHHhhcCCCccccCcccc--ccCCc---hhHHHHHHHHHHHH
Q psy15138 88 LKLLVRILKSPGCRKVPVMNC--LISPT---EEQFDLLQKKIKSL 127 (320)
Q Consensus 88 l~~~~~~l~~~~~~~i~~kl~--~~~gn---yd~~~~l~~q~~~~ 127 (320)
.+++.+.+.......++. +. .+..+ ++..+++.+.+.+.
T Consensus 134 ~~~i~~~l~~~~~~~~~i-i~~~~SA~~~~~g~gi~~L~~~l~~~ 177 (370)
T 2elf_A 134 KAKLKVITSGTVLQDWEC-ISLNTNKSAKNPFEGVDELKARINEV 177 (370)
T ss_dssp HHHHHHHTTTSTTTTCEE-EECCCCTTSSSTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCceEE-EecccccccCcCCCCHHHHHHHHHhh
Confidence 888888776543333322 11 23345 66777776665544
No 43
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.39 E-value=3.6e-13 Score=131.24 Aligned_cols=112 Identities=21% Similarity=0.223 Sum_probs=91.1
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL 91 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~ 91 (320)
..+.|+|+|||++|. |..++..+|.+++ |+++++|+++||++|+.+++.+++|.++++||+|+.+.++++...+++
T Consensus 73 ~~i~iiDtPGh~~~~~~~~~~~~~aD~~il--Vvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l 150 (482)
T 1wb1_A 73 YRITLVDAPGHADLIRAVVSAADIIDLALI--VVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIM 150 (482)
T ss_dssp EEEEECCCSSHHHHHHHHHHHTTSCCEEEE--EEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHH
T ss_pred EEEEEEECCChHHHHHHHHHHHhhCCEEEE--EEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHH
Confidence 468999999999999 8999999999999 999999999999999999999999999999999999988888888888
Q ss_pred HHhhcCC-CccccCccccccCCchhHHHHHHHHHHHHH
Q psy15138 92 VRILKSP-GCRKVPVMNCLISPTEEQFDLLQKKIKSLI 128 (320)
Q Consensus 92 ~~~l~~~-~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~ 128 (320)
...+... .+...+. +..+.-+.+.++++.+.+...+
T Consensus 151 ~~~l~~~~~~~~~~i-i~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 151 KSILQSTHNLKNSSI-IPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp HHHHHHSSSGGGCCE-EECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHhhhcccccceE-EEEECcCCCCHHHHHHHHHHhh
Confidence 8876654 3433322 1123355667777777766654
No 44
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.38 E-value=6.6e-13 Score=126.85 Aligned_cols=111 Identities=19% Similarity=0.232 Sum_probs=87.4
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCC-chhHHHHHHHHHHcCC-CcEEEEeCCCCCChhHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGI-VGMTKEHLGLALALSV-PVFVVVTKIDMCPPNVLQDTLK 89 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~-~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~~~~le~~l~ 89 (320)
..+.|+|+|||++|. |+.++..+|.+++ |++|++|. ++||++|+.+++.+++ |.++++||+|+.+.++.++..+
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~il--Vvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~ 160 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAIL--VIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYR 160 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEE--EEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEE--EEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHH
Confidence 468999999999999 9999999999999 99999998 9999999999999999 6778899999999888777777
Q ss_pred HHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138 90 LLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL 127 (320)
Q Consensus 90 ~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~ 127 (320)
++.+.+.......++. +..+..+.+.++++.+.+...
T Consensus 161 ~i~~~l~~~~~~~~~~-i~vSA~~g~gi~~L~~~l~~~ 197 (410)
T 1kk1_A 161 QIKEFIEGTVAENAPI-IPISALHGANIDVLVKAIEDF 197 (410)
T ss_dssp HHHHHHTTSTTTTCCE-EECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCCCeE-EEeeCCCCCCHHHHHHHHHHh
Confidence 8877766432222221 112335556677777766654
No 45
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.38 E-value=2.7e-13 Score=133.77 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=63.5
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCCccccceeecCCCCCCCHHhH
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKI 280 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 280 (320)
.|++++|+||||||||||+|+|+ |+++|++|+|.+. ..+++++|.......+ ++.+++.... ....
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~-Gl~~p~~G~i~~~-------~~i~~v~Q~~~~~~~~-tv~~~~~~~~-----~~~~ 376 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLA-GVEEPTEGKIEWD-------LTVAYKPQYIKADYEG-TVYELLSKID-----ASKL 376 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH-TSSCCSBCCCCCC-------CCEEEECSSCCCCCSS-BHHHHHHHHH-----HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh-CCCCCCCeEEEEC-------ceEEEEecCCcCCCCC-cHHHHHHhhh-----ccCC
Confidence 39999999999999999999999 9999999999862 1245555543221111 2222221100 0000
Q ss_pred HHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 281 CERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 281 ~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
...+.+.++++.+|+.+..++++..|||++
T Consensus 377 -~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe 406 (538)
T 1yqt_A 377 -NSNFYKTELLKPLGIIDLYDREVNELSGGE 406 (538)
T ss_dssp -TCHHHHHHTTTTTTCGGGTTSBGGGCCHHH
T ss_pred -CHHHHHHHHHHHcCChhhhcCChhhCCHHH
Confidence 012345567778888888999999999964
No 46
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.38 E-value=8.1e-14 Score=139.35 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=64.8
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g 248 (320)
.++++++++.|.. ...+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. ....+.
T Consensus 354 ~i~~~~v~~~y~~---~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~-g~~~p~~G~i~~~g~~i~~~~~~~~r~ 429 (598)
T 3qf4_B 354 EIEFKNVWFSYDK---KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM-RFYDVDRGQILVDGIDIRKIKRSSLRS 429 (598)
T ss_dssp CEEEEEEECCSSS---SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHT-TSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEEEEEECCC---CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHh-cCcCCCCeEEEECCEEhhhCCHHHHHh
Confidence 3667777776642 23467777765 9999999999999999999999 999999999999865421 111223
Q ss_pred cceeeeccccCC-ccccceeecC
Q psy15138 249 RTSSVGNDILGF-DSVGNVVNKP 270 (320)
Q Consensus 249 ~v~~~~~~~~~~-~~~~~~v~~~ 270 (320)
.++.++|+...| .++.+++..+
T Consensus 430 ~i~~v~Q~~~lf~~tv~eni~~~ 452 (598)
T 3qf4_B 430 SIGIVLQDTILFSTTVKENLKYG 452 (598)
T ss_dssp HEEEECTTCCCCSSBHHHHHHSS
T ss_pred ceEEEeCCCccccccHHHHHhcC
Confidence 455555555444 3556666554
No 47
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.38 E-value=1.2e-13 Score=137.64 Aligned_cols=93 Identities=22% Similarity=0.236 Sum_probs=63.0
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g 248 (320)
.++++++++.|... ...+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. ....+.
T Consensus 341 ~i~~~~v~~~y~~~--~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~-g~~~p~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b60_A 341 DLEFRNVTFTYPGR--EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT-RFYDIDEGHILMDGHDLREYTLASLRN 417 (582)
T ss_dssp CEEEEEEEECSSSS--SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHT-TTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred cEEEEEEEEEcCCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHh-hccCCCCCeEEECCEEccccCHHHHHh
Confidence 35666666655321 13466666665 9999999999999999999999 999999999999865421 111223
Q ss_pred cceeeeccccCC-ccccceeecC
Q psy15138 249 RTSSVGNDILGF-DSVGNVVNKP 270 (320)
Q Consensus 249 ~v~~~~~~~~~~-~~~~~~v~~~ 270 (320)
.++.++|+...| .++.+++..+
T Consensus 418 ~i~~v~Q~~~l~~~tv~eni~~~ 440 (582)
T 3b60_A 418 QVALVSQNVHLFNDTVANNIAYA 440 (582)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTT
T ss_pred hCeEEccCCcCCCCCHHHHHhcc
Confidence 455555554443 3566666654
No 48
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.37 E-value=7.7e-13 Score=126.29 Aligned_cols=111 Identities=24% Similarity=0.290 Sum_probs=81.7
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCC-chhHHHHHHHHHHcCC-CcEEEEeCCCCCChhHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGI-VGMTKEHLGLALALSV-PVFVVVTKIDMCPPNVLQDTLK 89 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~-~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~~~~le~~l~ 89 (320)
..+.|+|+|||++|. |+.++..+|.+++ |+++++|. ++||++|+.+++.+++ |+++++||+|+.+.++.++..+
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~il--Vvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~ 158 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAIL--VIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYE 158 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEE--EEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHH
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEE--EEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHH
Confidence 468999999999999 9999999999999 99999998 8999999999999999 6789999999987766555556
Q ss_pred HHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138 90 LLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL 127 (320)
Q Consensus 90 ~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~ 127 (320)
++.+.+.......++. +..+..+.+.++++.+.+...
T Consensus 159 ~i~~~l~~~~~~~~~~-i~vSA~~g~gi~~L~~~l~~~ 195 (408)
T 1s0u_A 159 QIKEFVKGTIAENAPI-IPISAHHEANIDVLLKAIQDF 195 (408)
T ss_dssp HHHHHHTTSTTTTCCE-EEC------CHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCCeE-EEeeCCCCCCHHHHHHHHHHh
Confidence 6666655422222221 112335556677777766654
No 49
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.35 E-value=1.4e-13 Score=137.04 Aligned_cols=93 Identities=18% Similarity=0.141 Sum_probs=64.0
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~ 249 (320)
++++++++.|... ...+++++++. |++++|+||||||||||+++|. |+++|++|+|.+++.+.. ....+..
T Consensus 340 i~~~~v~~~y~~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~-g~~~p~~G~i~~~g~~~~~~~~~~~r~~ 416 (578)
T 4a82_A 340 IDIDHVSFQYNDN--EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP-RFYDVTSGQILIDGHNIKDFLTGSLRNQ 416 (578)
T ss_dssp EEEEEEEECSCSS--SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTT-TSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred EEEEEEEEEcCCC--CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHh-cCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 5666666655321 23456666665 9999999999999999999999 999999999999865421 1112234
Q ss_pred ceeeeccccCC-ccccceeecCC
Q psy15138 250 TSSVGNDILGF-DSVGNVVNKPE 271 (320)
Q Consensus 250 v~~~~~~~~~~-~~~~~~v~~~~ 271 (320)
++.++|+...| .++.+++..+.
T Consensus 417 i~~v~Q~~~l~~~tv~eni~~~~ 439 (578)
T 4a82_A 417 IGLVQQDNILFSDTVKENILLGR 439 (578)
T ss_dssp EEEECSSCCCCSSBHHHHHGGGC
T ss_pred eEEEeCCCccCcccHHHHHhcCC
Confidence 55556655444 35666666543
No 50
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.35 E-value=1.3e-12 Score=124.46 Aligned_cols=111 Identities=21% Similarity=0.204 Sum_probs=89.9
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCC-chhHHHHHHHHHHcCC-CcEEEEeCCCCCChhHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGI-VGMTKEHLGLALALSV-PVFVVVTKIDMCPPNVLQDTLK 89 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~-~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~~~~le~~l~ 89 (320)
..+.|+|+|||++|. |+.++..+|.+++ |+++++|. ++++++|+.+++.+++ |.++++||+|+.+.++.++..+
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~il--Vvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~ 152 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAIL--VVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYR 152 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEE--EEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEE--EEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHH
Confidence 468899999999999 8999999999999 99999998 9999999999999999 7888999999999988888888
Q ss_pred HHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138 90 LLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL 127 (320)
Q Consensus 90 ~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~ 127 (320)
++.+.+.......++. +..+..+.+..+++.+.+...
T Consensus 153 ~i~~~l~~~~~~~~~i-i~vSA~~g~gi~~L~~~l~~~ 189 (403)
T 3sjy_A 153 QIKQFTKGTWAENVPI-IPVSALHKINIDSLIEGIEEY 189 (403)
T ss_dssp HHHHHHTTSTTTTCCE-EECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCEE-EEEECCCCcChHHHHHHHHHh
Confidence 8888776543333322 113345666777777766654
No 51
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.34 E-value=7.3e-13 Score=130.58 Aligned_cols=96 Identities=17% Similarity=0.166 Sum_probs=62.4
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccC--CccccceeecCCCCCCCHH
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILG--FDSVGNVVNKPEHGSLDWV 278 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~--~~~~~~~v~~~~~~~~~~~ 278 (320)
.|++++|+||||||||||+++|+ |+++|++|+|.+... .+++ .+|.... ..++.+++...........
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~~~------~i~~---~~q~~~~~~~~tv~~~l~~~~~~~~~~~ 362 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILV-GEITADEGSVTPEKQ------ILSY---KPQRIFPNYDGTVQQYLENASKDALSTS 362 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHT-TSSCCSBCCEESSCC------CEEE---ECSSCCCCCSSBHHHHHHHHCSSTTCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh-CCCCCCCcEEEECCe------eeEe---echhcccccCCCHHHHHHHhhhhccchh
Confidence 39999999999999999999999 999999999986421 1233 3333221 1223333322111111110
Q ss_pred hHHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 279 KICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 279 ~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
...+.++++.+++.+..++++.+|||++
T Consensus 363 -----~~~~~~~l~~~~l~~~~~~~~~~LSGGq 390 (538)
T 3ozx_A 363 -----SWFFEEVTKRLNLHRLLESNVNDLSGGE 390 (538)
T ss_dssp -----SHHHHHTTTTTTGGGCTTSBGGGCCHHH
T ss_pred -----HHHHHHHHHHcCCHHHhcCChhhCCHHH
Confidence 1223456777788889999999999964
No 52
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.33 E-value=2.3e-13 Score=136.03 Aligned_cols=93 Identities=16% Similarity=0.142 Sum_probs=62.2
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~ 249 (320)
++++++++.|... ....+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. ....+..
T Consensus 342 i~~~~v~~~y~~~-~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~-g~~~p~~G~i~~~g~~i~~~~~~~~~~~ 419 (595)
T 2yl4_A 342 LEFKNVHFAYPAR-PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLL-RLYDPASGTISLDGHDIRQLNPVWLRSK 419 (595)
T ss_dssp EEEEEEEEECSSC-TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHT-TSSCCSEEEEEETTEETTTBCHHHHHHS
T ss_pred EEEEEEEEEeCCC-CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHh-cCcCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 5556555544211 013467777765 9999999999999999999999 999999999999865421 1111234
Q ss_pred ceeeeccccCC-ccccceeecC
Q psy15138 250 TSSVGNDILGF-DSVGNVVNKP 270 (320)
Q Consensus 250 v~~~~~~~~~~-~~~~~~v~~~ 270 (320)
++.++|+...| .++.+++..+
T Consensus 420 i~~v~Q~~~l~~~tv~eni~~~ 441 (595)
T 2yl4_A 420 IGTVSQEPILFSCSIAENIAYG 441 (595)
T ss_dssp EEEECSSCCCCSSBHHHHHHTT
T ss_pred eEEEccCCcccCCCHHHHHhhc
Confidence 55555554443 3566666554
No 53
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.33 E-value=9.1e-13 Score=126.99 Aligned_cols=87 Identities=28% Similarity=0.320 Sum_probs=73.0
Q ss_pred CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-------hhHHHHHHHHHHcCCC-cEEEEeCCCCCCh
Q psy15138 12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-------GMTKEHLGLALALSVP-VFVVVTKIDMCPP 81 (320)
Q Consensus 12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-------~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~~ 81 (320)
....+.|+|+|||++|. |+.++..+|.+++ ||+|++|++ +||++|+.+++.+++| +++++||+|+...
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~il--VVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVL--VISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTV 170 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEE--EEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCccc
Confidence 44568999999999999 9999999999999 999999987 7999999999999997 8899999999754
Q ss_pred h----HHHHHHHHHHHhhcCCCc
Q psy15138 82 N----VLQDTLKLLVRILKSPGC 100 (320)
Q Consensus 82 ~----~le~~l~~~~~~l~~~~~ 100 (320)
+ .+++..+++...++..++
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~ 193 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGF 193 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcc
Confidence 4 455566666666554444
No 54
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.32 E-value=2.4e-13 Score=135.58 Aligned_cols=133 Identities=18% Similarity=0.202 Sum_probs=82.0
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g 248 (320)
.++++++++.|.. ....+++++++. |++++|+||||||||||+++|+ |+++|++|+|.+++.+.. ....+.
T Consensus 341 ~i~~~~v~~~y~~--~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~-g~~~~~~G~i~i~g~~i~~~~~~~~r~ 417 (587)
T 3qf4_A 341 SVSFENVEFRYFE--NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIP-RLIDPERGRVEVDELDVRTVKLKDLRG 417 (587)
T ss_dssp CEEEEEEEECSSS--SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTT-TSSCCSEEEEEESSSBGGGBCHHHHHH
T ss_pred cEEEEEEEEEcCC--CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCccCCCcEEEECCEEcccCCHHHHHh
Confidence 3566666666632 123466666665 9999999999999999999999 999999999999865421 111233
Q ss_pred cceeeeccccCC-ccccceeecCCCCCCCHHhHHHHH--HHHHHHhccc--CCccccccccccccCCC
Q psy15138 249 RTSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICERS--AKVITFIDLA--GHERYLKTTVFGMTGHV 311 (320)
Q Consensus 249 ~v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~--~~~l~~l~l~--gl~~~~~~~~~~LSG~~ 311 (320)
.++.++|+...| .++.+++..+... ....+..+.. ..+.++++.. |+....+..+.+|||++
T Consensus 418 ~i~~v~Q~~~lf~~tv~eni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGq 484 (587)
T 3qf4_A 418 HISAVPQETVLFSGTIKENLKWGRED-ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQ 484 (587)
T ss_dssp HEEEECSSCCCCSEEHHHHHTTTCSS-CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHH
T ss_pred heEEECCCCcCcCccHHHHHhccCCC-CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHH
Confidence 455566655544 3556666554321 1222221111 1112222221 55666778889999965
No 55
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.31 E-value=3.3e-12 Score=121.53 Aligned_cols=87 Identities=26% Similarity=0.258 Sum_probs=74.0
Q ss_pred CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCC-ChhHHHHH
Q psy15138 12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMC-PPNVLQDT 87 (320)
Q Consensus 12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~-~~~~le~~ 87 (320)
....+.|+|+|||++|. |..+...+|.+++ |+++++|.++||++|+.+++.+++| .++++||+|+. +.+.++..
T Consensus 64 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~il--Vvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~ 141 (397)
T 1d2e_A 64 AARHYAHTDCPGHADYVKNMITGTAPLDGCIL--VVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELV 141 (397)
T ss_dssp SSCEEEEEECSSHHHHHHHHHHTSSCCSEEEE--EEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHH
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEE--EEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHH
Confidence 34678999999999999 8999999999999 9999999999999999999999998 57899999998 45666666
Q ss_pred HHHHHHhhcCCCc
Q psy15138 88 LKLLVRILKSPGC 100 (320)
Q Consensus 88 l~~~~~~l~~~~~ 100 (320)
.+++.+.+...++
T Consensus 142 ~~~~~~~l~~~~~ 154 (397)
T 1d2e_A 142 ELEIRELLTEFGY 154 (397)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCC
Confidence 6677776654433
No 56
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.29 E-value=6.6e-13 Score=121.08 Aligned_cols=57 Identities=25% Similarity=0.311 Sum_probs=40.3
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL 238 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~ 238 (320)
.++++++++.+ ..++++++|. |++++|+||||||||||+|+|+ |+++|++|+|.+++
T Consensus 40 ~l~~~~l~~~~------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~-Gl~~p~~G~I~~~g 99 (290)
T 2bbs_A 40 SLSFSNFSLLG------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIM-GELEPSEGKIKHSG 99 (290)
T ss_dssp ----------C------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHT-TSSCEEEEEEECCS
T ss_pred eEEEEEEEEcC------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHh-cCCCCCCcEEEECC
Confidence 35555555421 3456666664 9999999999999999999999 99999999999864
No 57
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.29 E-value=2.3e-12 Score=125.16 Aligned_cols=83 Identities=25% Similarity=0.300 Sum_probs=62.4
Q ss_pred CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-------hhHHHHHHHHHHcCCC-cEEEEeCCCCCC--
Q psy15138 13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-------GMTKEHLGLALALSVP-VFVVVTKIDMCP-- 80 (320)
Q Consensus 13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-------~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~-- 80 (320)
...+.|+|+|||++|. |+.++..+|.+++ ||++++|.+ +||++|+.+++.+++| ++|++||+|+.+
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~il--VvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~ 197 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVL--VISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQ 197 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEE--EEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCS
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEE--EEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcc
Confidence 3458899999999999 9999999999999 999999985 7999999999999997 889999999964
Q ss_pred --hhHHHHHHHHHHHhhcC
Q psy15138 81 --PNVLQDTLKLLVRILKS 97 (320)
Q Consensus 81 --~~~le~~l~~~~~~l~~ 97 (320)
.++++...+++...+..
T Consensus 198 ~~~~~~~~i~~e~~~~l~~ 216 (467)
T 1r5b_A 198 WSEERYKECVDKLSMFLRR 216 (467)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 46677776777666544
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.26 E-value=1.5e-12 Score=135.20 Aligned_cols=159 Identities=20% Similarity=0.194 Sum_probs=100.5
Q ss_pred chhHHHHHHHHHHcCC-CcEEEE----eCCCCCChhHHHHHHHHHHH-hhc--C-------CCcccc----CccccccCC
Q psy15138 52 VGMTKEHLGLALALSV-PVFVVV----TKIDMCPPNVLQDTLKLLVR-ILK--S-------PGCRKV----PVMNCLISP 112 (320)
Q Consensus 52 ~~~t~~~l~l~~~l~i-~~~v~l----nk~Dl~~~~~le~~l~~~~~-~l~--~-------~~~~~i----~~kl~~~~g 112 (320)
.+..|.++.||+++-. |.++++ |.+|..+..|+.+++.+ .+ ++. + ..|+++ .+++..+.|
T Consensus 550 SGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~-~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G 628 (986)
T 2iw3_A 550 SGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKG 628 (986)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEES
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCC
Confidence 4677889999999999 788888 99999999999988877 22 111 1 224433 445545678
Q ss_pred chhHHHHHHHHHHHHHHcCcccceecccccCCC--CC-CCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCCeeeee
Q psy15138 113 TEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDG--GE-NGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQY 189 (320)
Q Consensus 113 nyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~--~~-~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (320)
+++.+...... ....+.+...... .. .+... ........+++++++++.|...
T Consensus 629 ~~~e~~~~~~~---------~~~~~~l~~~~~~~~~p~~~~~~--------------~~~~~~~~mL~v~nLs~~Y~g~- 684 (986)
T 2iw3_A 629 NFTEFVKKCPA---------AKAYEELSNTDLEFKFPEPGYLE--------------GVKTKQKAIVKVTNMEFQYPGT- 684 (986)
T ss_dssp CHHHHHHHCGG---------GGGSSSTTTCCCCCCCCCCCCCT--------------TCCSTTSEEEEEEEEEECCTTC-
T ss_pred CHHHHHhhhHH---------HHHHHhhhhhhhhcccccccccc--------------ccccCCCceEEEEeeEEEeCCC-
Confidence 88776532111 0111222110000 00 00000 0000112467888877665321
Q ss_pred cceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138 190 LLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK 237 (320)
Q Consensus 190 ~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~ 237 (320)
...+++++++. |++++|+||||||||||+|+|+ |+++|++|+|+++
T Consensus 685 -~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLa-Gll~P~sG~I~~~ 733 (986)
T 2iw3_A 685 -SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLT-GELLPTSGEVYTH 733 (986)
T ss_dssp -SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHT-TSSCCSEEEEEEC
T ss_pred -CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCceEEEEc
Confidence 13456666665 9999999999999999999999 9999999999885
No 59
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.25 E-value=1e-11 Score=118.36 Aligned_cols=86 Identities=27% Similarity=0.304 Sum_probs=73.0
Q ss_pred CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCC-ChhHHHHH
Q psy15138 12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMC-PPNVLQDT 87 (320)
Q Consensus 12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~-~~~~le~~ 87 (320)
....+.|+|+|||++|. |..+...+|.+++ |+++++|.++++++|+.+++.+++| +++++||+|+. +.+.++..
T Consensus 73 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~il--Vvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~ 150 (405)
T 2c78_A 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAIL--VVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLV 150 (405)
T ss_dssp SSCEEEEEECCCSGGGHHHHHHHHTTCSSEEE--EEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHH
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHCCEEEE--EEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHH
Confidence 34568999999999999 8888999999999 9999999999999999999999998 77899999998 55666666
Q ss_pred HHHHHHhhcCCC
Q psy15138 88 LKLLVRILKSPG 99 (320)
Q Consensus 88 l~~~~~~l~~~~ 99 (320)
.+++...+...+
T Consensus 151 ~~~~~~~l~~~~ 162 (405)
T 2c78_A 151 EMEVRDLLNQYE 162 (405)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 666766655433
No 60
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.23 E-value=3.4e-12 Score=127.25 Aligned_cols=85 Identities=26% Similarity=0.301 Sum_probs=65.0
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCC-------chhHHHHHHHHHHcCCC-cEEEEeCCCCCC--h
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGI-------VGMTKEHLGLALALSVP-VFVVVTKIDMCP--P 81 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~-------~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~--~ 81 (320)
..+.|+|+|||++|+ |+.++..+|.++| ||++++|. ++||++|+.+++.+++| +++++||+|+.. .
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alL--VVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~ 332 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVL--VVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSE 332 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCS--EEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCH
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEE--EEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccH
Confidence 568899999999999 9999999999999 99999854 89999999999999996 788999999964 7
Q ss_pred hHHHHHHHHHHHhh-cCCCc
Q psy15138 82 NVLQDTLKLLVRIL-KSPGC 100 (320)
Q Consensus 82 ~~le~~l~~~~~~l-~~~~~ 100 (320)
++++...+++...+ +..++
T Consensus 333 ~~~~~i~~el~~~l~~~~g~ 352 (592)
T 3mca_A 333 DRFQEIKNIVSDFLIKMVGF 352 (592)
T ss_dssp HHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHHHhhCC
Confidence 88888888888887 54444
No 61
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.21 E-value=1.2e-11 Score=119.11 Aligned_cols=86 Identities=24% Similarity=0.374 Sum_probs=74.1
Q ss_pred CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCC-------CchhHHHHHHHHHHcCC-CcEEEEeCCCCCC-
Q psy15138 12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAG-------IVGMTKEHLGLALALSV-PVFVVVTKIDMCP- 80 (320)
Q Consensus 12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g-------~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~- 80 (320)
....+.|+|+|||++|. |..+...+|.+++ |+++++| +++|+++|+.+++.+++ |+++++||+|+.+
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~il--VvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAIL--VVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEE--EEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEE--EEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence 34568999999999999 8999999999999 9999999 89999999999999999 5788999999976
Q ss_pred ---hhHHHHHHHHHHHhhcCCC
Q psy15138 81 ---PNVLQDTLKLLVRILKSPG 99 (320)
Q Consensus 81 ---~~~le~~l~~~~~~l~~~~ 99 (320)
+++++...+++...+...+
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~ 181 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYG 181 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHHHHHcC
Confidence 5667777777777765433
No 62
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.21 E-value=9.6e-12 Score=119.66 Aligned_cols=85 Identities=20% Similarity=0.244 Sum_probs=72.7
Q ss_pred CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCC--hhHHHHH
Q psy15138 13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCP--PNVLQDT 87 (320)
Q Consensus 13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~--~~~le~~ 87 (320)
...+.|+|+|||++|. |..+...+|.+++ |+++++|+++++++|+.+++.+++| +++++||+|+.+ ++++++.
T Consensus 103 ~~~~~iiDtpGh~~f~~~~~~~~~~aD~~il--VvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i 180 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTRNMATGASTCDLAII--LVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESI 180 (434)
T ss_dssp SEEEEEEECCCSGGGHHHHHHHHTTCSEEEE--EEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHH
T ss_pred CceEEEEECCChHHHHHHHHHHHhhCCEEEE--EEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHH
Confidence 3458899999999998 8888999999999 9999999999999999999999995 788899999975 5667767
Q ss_pred HHHHHHhhcCCC
Q psy15138 88 LKLLVRILKSPG 99 (320)
Q Consensus 88 l~~~~~~l~~~~ 99 (320)
.+++...+...+
T Consensus 181 ~~~~~~~~~~~g 192 (434)
T 1zun_B 181 KADYLKFAEGIA 192 (434)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHhC
Confidence 777777655433
No 63
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.21 E-value=4e-12 Score=137.28 Aligned_cols=95 Identities=16% Similarity=0.081 Sum_probs=71.7
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g 248 (320)
.++++++++.|.... ..++++++++. |+++|||||||||||||+++|. |+++|++|+|.+++.+. .....+.
T Consensus 1076 ~I~f~nVsf~Y~~~~-~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~-rl~~p~~G~I~iDG~di~~i~~~~lR~ 1153 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERP-EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLE-RFYDTLGGEIFIDGSEIKTLNPEHTRS 1153 (1321)
T ss_dssp CEEEEEEEECCTTSC-SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHT-TSSCCSSSEEEETTEETTTBCHHHHHT
T ss_pred eEEEEEEEEeCCCCC-CCccccceeEEECCCCEEEEECCCCChHHHHHHHHh-cCccCCCCEEEECCEEhhhCCHHHHHh
Confidence 467888877774321 23456666665 9999999999999999999999 99999999999986552 2233456
Q ss_pred cceeeeccccCC-ccccceeecCC
Q psy15138 249 RTSSVGNDILGF-DSVGNVVNKPE 271 (320)
Q Consensus 249 ~v~~~~~~~~~~-~~~~~~v~~~~ 271 (320)
.++.++|++..| .+..+|+.++.
T Consensus 1154 ~i~~V~Qdp~LF~gTIreNI~~gl 1177 (1321)
T 4f4c_A 1154 QIAIVSQEPTLFDCSIAENIIYGL 1177 (1321)
T ss_dssp TEEEECSSCCCCSEEHHHHHSSSS
T ss_pred heEEECCCCEeeCccHHHHHhccC
Confidence 788888888776 46677776653
No 64
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.20 E-value=6e-12 Score=121.91 Aligned_cols=84 Identities=25% Similarity=0.309 Sum_probs=72.8
Q ss_pred CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-------hHHHHHHHHHHcCCC-cEEEEeCCCCC--
Q psy15138 12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-------MTKEHLGLALALSVP-VFVVVTKIDMC-- 79 (320)
Q Consensus 12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-------~t~~~l~l~~~l~i~-~~v~lnk~Dl~-- 79 (320)
....+.|+|+|||++|. |+.+...+|.+++ |+++++|.++ |+++|+.+++.+++| +++++||+|+.
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~il--Vvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAIL--IIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEE--EEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTT
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEE--EEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccC
Confidence 44568999999999999 9999999999999 9999998877 999999999999997 78889999997
Q ss_pred ChhHHHHHHHHHHHhhcC
Q psy15138 80 PPNVLQDTLKLLVRILKS 97 (320)
Q Consensus 80 ~~~~le~~l~~~~~~l~~ 97 (320)
+.++++...+++...+..
T Consensus 161 ~~~~~~~i~~~~~~~l~~ 178 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKK 178 (458)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 467777777777766554
No 65
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.20 E-value=4.8e-12 Score=126.38 Aligned_cols=96 Identities=15% Similarity=0.145 Sum_probs=61.8
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCCccccceeecCCCCCCCHHhH
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKI 280 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 280 (320)
.|++++|+||||||||||+|+|+ |+++|++|+|.+. ..+++++|.......+ ++.+++.... ....
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~-Gl~~p~~G~I~~~-------~~i~~v~Q~~~~~~~~-tv~e~~~~~~-----~~~~ 446 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLA-GVEEPTEGKVEWD-------LTVAYKPQYIKAEYEG-TVYELLSKID-----SSKL 446 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH-TSSCCSBSCCCCC-------CCEEEECSSCCCCCSS-BHHHHHHHHH-----HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEEe-------eEEEEEecCccCCCCC-cHHHHHHhhh-----ccCC
Confidence 39999999999999999999999 9999999999862 1245555443221111 2222222110 0000
Q ss_pred HHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 281 CERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 281 ~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
.....+.++++.+|+.+..++++.+|||++
T Consensus 447 -~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe 476 (607)
T 3bk7_A 447 -NSNFYKTELLKPLGIIDLYDRNVEDLSGGE 476 (607)
T ss_dssp -HCHHHHHHTHHHHTCTTTTTSBGGGCCHHH
T ss_pred -CHHHHHHHHHHHcCCchHhcCChhhCCHHH
Confidence 111234455566677788899999999964
No 66
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.19 E-value=4.5e-11 Score=125.24 Aligned_cols=87 Identities=22% Similarity=0.243 Sum_probs=74.0
Q ss_pred CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCC-cEEEEeCCCCCC-hhHHHHH
Q psy15138 12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCP-PNVLQDT 87 (320)
Q Consensus 12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~-~~~le~~ 87 (320)
....+.|+|+|||++|. |+.+...+|.+++ ||++++|.++||++|+.+++.+++| +++++||+|+.+ .++++..
T Consensus 357 ~~~kI~IIDTPGHedF~~~mi~gas~AD~aIL--VVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i 434 (1289)
T 3avx_A 357 PTRHYAHVDCPGHADYVKNMITGAAQMDGAIL--VVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELV 434 (1289)
T ss_dssp SSCEEEEEECCCHHHHHHHHHHTSCCCSEEEE--EEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHH
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEE--EEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHH
Confidence 34568999999999999 8999999999999 9999999999999999999999998 678899999984 5566666
Q ss_pred HHHHHHhhcCCCc
Q psy15138 88 LKLLVRILKSPGC 100 (320)
Q Consensus 88 l~~~~~~l~~~~~ 100 (320)
.+++...+...++
T Consensus 435 ~eEi~elLk~~G~ 447 (1289)
T 3avx_A 435 EMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHhccc
Confidence 6677776654433
No 67
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.18 E-value=1.1e-11 Score=133.70 Aligned_cols=94 Identities=15% Similarity=0.087 Sum_probs=66.4
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~ 249 (320)
++++++++.|... ....+++++++. |+++||+||||||||||+++|. |+++|++|+|.+++.+.. ....+..
T Consensus 1031 i~~~~v~~~y~~~-~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~-g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A 1031 VQFSGVVFNYPTR-PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE-RFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp EEEEEEEBCCSCG-GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHT-TSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred EEEEEEEEECCCC-CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHh-cCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence 5666666666421 123577888876 9999999999999999999999 999999999999865421 1222345
Q ss_pred ceeeeccccCC-ccccceeecCC
Q psy15138 250 TSSVGNDILGF-DSVGNVVNKPE 271 (320)
Q Consensus 250 v~~~~~~~~~~-~~~~~~v~~~~ 271 (320)
++.++|+...| .++.+++..+.
T Consensus 1109 i~~v~Q~~~l~~~ti~eNi~~~~ 1131 (1284)
T 3g5u_A 1109 LGIVSQEPILFDCSIAENIAYGD 1131 (1284)
T ss_dssp CEEEESSCCCCSSBHHHHHTCCC
T ss_pred eEEECCCCccccccHHHHHhccC
Confidence 66666666544 35566665543
No 68
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.18 E-value=5e-12 Score=136.57 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=70.2
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccc---hhhhhcC
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRH---KHEMESG 248 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~---~~~~~~g 248 (320)
.++++++++.|... +...+++++++. |+.+||+||||||||||+++|. |+++|.+|+|.+++.+. .....+.
T Consensus 415 ~I~~~nvsF~Y~~~-~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~-~~~~~~~G~I~idG~~i~~~~~~~lr~ 492 (1321)
T 4f4c_A 415 DITVENVHFTYPSR-PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLL-RYYDVLKGKITIDGVDVRDINLEFLRK 492 (1321)
T ss_dssp CEEEEEEEECCSSS-TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHT-TSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred cEEEEEeeeeCCCC-CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhc-cccccccCcccCCCccchhccHHHHhh
Confidence 36777777777432 123456666664 9999999999999999999999 99999999999986542 2223345
Q ss_pred cceeeeccccCC-ccccceeecCC
Q psy15138 249 RTSSVGNDILGF-DSVGNVVNKPE 271 (320)
Q Consensus 249 ~v~~~~~~~~~~-~~~~~~v~~~~ 271 (320)
.++.++|+.+.| .+..+|+.++.
T Consensus 493 ~i~~v~Q~~~Lf~~TI~eNI~~g~ 516 (1321)
T 4f4c_A 493 NVAVVSQEPALFNCTIEENISLGK 516 (1321)
T ss_dssp HEEEECSSCCCCSEEHHHHHHTTC
T ss_pred cccccCCcceeeCCchhHHHhhhc
Confidence 677777777776 56778887654
No 69
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.17 E-value=1.5e-11 Score=119.97 Aligned_cols=83 Identities=22% Similarity=0.277 Sum_probs=70.8
Q ss_pred CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCC-------CchhHHHHHHHHHHcCC-CcEEEEeCCCCCC-
Q psy15138 12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAG-------IVGMTKEHLGLALALSV-PVFVVVTKIDMCP- 80 (320)
Q Consensus 12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g-------~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~- 80 (320)
....+.|+|+|||++|. |..+...+|.+++ |+++++| +.+++++|+.+++.+++ |+++++||+|+.+
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~ll--VvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAIL--CVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEE--EEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTT
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEE--EEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccc
Confidence 44568999999999999 8899999999999 9999998 67899999999999999 5888999999976
Q ss_pred -hhHHHHHHHHHHHhhc
Q psy15138 81 -PNVLQDTLKLLVRILK 96 (320)
Q Consensus 81 -~~~le~~l~~~~~~l~ 96 (320)
.+.+++..+++...+.
T Consensus 187 ~~~~~~~i~~~~~~~l~ 203 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLV 203 (483)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 6667777777766654
No 70
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.14 E-value=7.8e-12 Score=134.69 Aligned_cols=134 Identities=13% Similarity=0.112 Sum_probs=79.2
Q ss_pred eeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccch---hhhhcCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGR 249 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~---~~~~~g~ 249 (320)
++++++++.|... ....+++++++. |++++|+||||||||||+++|. |+++|++|+|.+++.+.. ....+..
T Consensus 388 i~~~~v~~~y~~~-~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~-g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 388 LEFKNIHFSYPSR-KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ-RLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp EEEEEEEECCSST-TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTT-TSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred EEEEEEEEEcCCC-CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 5666666665321 113466777665 9999999999999999999999 999999999999865421 1112233
Q ss_pred ceeeeccccCC-ccccceeecCCCCCCCHHhHHHHHHH--HHHHhccc--CCccccccccccccCCCC
Q psy15138 250 TSSVGNDILGF-DSVGNVVNKPEHGSLDWVKICERSAK--VITFIDLA--GHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 250 v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~--~l~~l~l~--gl~~~~~~~~~~LSG~~~ 312 (320)
++.++|+...| .++.+++..+... ....+..+..+. +.++++.. |+..........|||++.
T Consensus 466 i~~v~Q~~~l~~~ti~eNi~~g~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~ 532 (1284)
T 3g5u_A 466 IGVVSQEPVLFATTIAENIRYGRED-VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQK 532 (1284)
T ss_dssp EEEECSSCCCCSSCHHHHHHHHCSS-CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHH
T ss_pred eEEEcCCCccCCccHHHHHhcCCCC-CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHH
Confidence 55566665544 4566666654322 222222221111 11222211 233344556678999653
No 71
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.13 E-value=1.2e-11 Score=121.97 Aligned_cols=51 Identities=22% Similarity=0.188 Sum_probs=40.3
Q ss_pred CCeeeeecce-eccccCC--ccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCcee
Q psy15138 183 NGLTGQYLLR-KRVESQD--FLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHA 234 (320)
Q Consensus 183 ~~~~~~~~~~-~~l~~~~--~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i 234 (320)
.+++..|+.. .++.+++ ..|++++|+||||||||||+|+|+ |+++|++|++
T Consensus 25 ~~ls~~yg~~~~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~-Gl~~p~~G~~ 78 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILA-GQLIPNLCGD 78 (538)
T ss_dssp CCEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHH-TSSCCCTTTT
T ss_pred cCcEEEECCccccccCcCcCCCCCEEEEECCCCCCHHHHHHHHh-CCCCCCCCcc
Confidence 4555556433 2455554 349999999999999999999999 9999999985
No 72
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.11 E-value=7.2e-11 Score=118.11 Aligned_cols=83 Identities=22% Similarity=0.276 Sum_probs=71.0
Q ss_pred CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCC-------CchhHHHHHHHHHHcCCC-cEEEEeCCCCCC-
Q psy15138 12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAG-------IVGMTKEHLGLALALSVP-VFVVVTKIDMCP- 80 (320)
Q Consensus 12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g-------~~~~t~~~l~l~~~l~i~-~~v~lnk~Dl~~- 80 (320)
....+.|+|+|||++|. |+.+...+|.+++ ||+++.| +++|+++|+.++..+++| ++||+||+|+..
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~ll--VVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAIL--CVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEE--EEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTT
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEE--EEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccch
Confidence 34568999999999999 9999999999999 9999987 578999999999999996 788899999976
Q ss_pred -hhHHHHHHHHHHHhhc
Q psy15138 81 -PNVLQDTLKLLVRILK 96 (320)
Q Consensus 81 -~~~le~~l~~~~~~l~ 96 (320)
...+++..+++...+.
T Consensus 321 ~~~~~~ei~~~l~~~l~ 337 (611)
T 3izq_1 321 SQQRFEEIKSKLLPYLV 337 (611)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 5666666667766554
No 73
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.09 E-value=1.3e-11 Score=123.23 Aligned_cols=51 Identities=20% Similarity=0.187 Sum_probs=40.0
Q ss_pred CCeeeeecce-eccccCC--ccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCcee
Q psy15138 183 NGLTGQYLLR-KRVESQD--FLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHA 234 (320)
Q Consensus 183 ~~~~~~~~~~-~~l~~~~--~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i 234 (320)
.+++..|+.. .++.+++ -.|++++|+||||||||||+|+|+ |+++|++|++
T Consensus 95 ~~ls~~yg~~~~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~-Gll~p~~G~~ 148 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILA-GQLIPNLCED 148 (607)
T ss_dssp GSEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHT-TSSCCCTTTT
T ss_pred CCeEEEECCCCeeeCCCCCCCCCCEEEEECCCCChHHHHHHHHh-CCCCCCCCcc
Confidence 3455555433 2455554 249999999999999999999999 9999999985
No 74
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.09 E-value=5.9e-11 Score=115.69 Aligned_cols=67 Identities=30% Similarity=0.301 Sum_probs=62.1
Q ss_pred CCCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138 12 AENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP 80 (320)
Q Consensus 12 ~~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~ 80 (320)
....+.|+|+|||++|. |..++..+|.+++ |+++++|.++||++|+..++.+++|.++++||+|+..
T Consensus 49 ~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL--VVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 49 ENGMITFLDTPGHAAFTSMRARGAQATDIVVL--VVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPE 117 (501)
T ss_dssp TSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE--EEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSST
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE--EeecccCccHHHHHHHHHHHhcCceEEEEEEeccccc
Confidence 34568999999999999 7888999999999 9999999999999999999999999999999999964
No 75
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.08 E-value=3.3e-11 Score=108.79 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=23.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR 240 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~ 240 (320)
.++|+||||||||||+|+|+ |...|++|++.+.+.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~-g~~~~~~G~i~~~g~~ 39 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLF-KSQVSRKASSWNREEK 39 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHH-HHHC------------
T ss_pred EEEEECCCCCCHHHHHHHHh-CCCCCCCCccccCCcc
Confidence 48999999999999999999 9999999999887543
No 76
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.07 E-value=4.4e-10 Score=108.15 Aligned_cols=64 Identities=16% Similarity=0.100 Sum_probs=47.3
Q ss_pred ceEEEeCCCcchhh-----------ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD-----------DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~-----------~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+||.+++. .......+|.+++ |+++..|+.....+-..+.+..+.|.++|+||+|+..
T Consensus 50 ~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~--V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~ 124 (439)
T 1mky_A 50 TFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLF--VVDGKRGITKEDESLADFLRKSTVDTILVANKAENLR 124 (439)
T ss_dssp EEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEE--EEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHH
T ss_pred EEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEE--EEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcc
Confidence 47789999987531 1122456788877 9999998877665545566667889999999999853
No 77
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.05 E-value=4.2e-11 Score=120.47 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=70.7
Q ss_pred CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHH
Q psy15138 13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKL 90 (320)
Q Consensus 13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~ 90 (320)
+..+.+||+|||.+|. +..+....|.|++ ||+|.+|+++||+.++..|+..++|++++|||+|....+ ++..+++
T Consensus 66 ~~~iNlIDTPGH~DF~~Ev~raL~~~Dgavl--VVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~-~~~~~~~ 142 (638)
T 3j25_A 66 NTKVNIIDTPGHMDFLAEVYRSLSVLDGAIL--LISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGID-LSTVYQD 142 (638)
T ss_dssp SCBCCCEECCCSSSTHHHHHHHHTTCSEEEC--CEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCC-SHHHHHH
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhCEEEE--EEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCC-HHHHHHH
Confidence 3568999999999999 7777888999999 999999999999999999999999999999999986543 3556777
Q ss_pred HHHhhc
Q psy15138 91 LVRILK 96 (320)
Q Consensus 91 ~~~~l~ 96 (320)
+.+.+.
T Consensus 143 i~~~l~ 148 (638)
T 3j25_A 143 IKEKLS 148 (638)
T ss_dssp HHHTTC
T ss_pred HHHHhC
Confidence 777664
No 78
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.02 E-value=1.7e-10 Score=115.21 Aligned_cols=52 Identities=23% Similarity=0.294 Sum_probs=39.4
Q ss_pred CCeeeeeccee-cccc--CCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceee
Q psy15138 183 NGLTGQYLLRK-RVES--QDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHAR 235 (320)
Q Consensus 183 ~~~~~~~~~~~-~l~~--~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~ 235 (320)
.+.+..|+... .+.. ..-.|++++|+||||||||||+|+|+ |+++|++|++.
T Consensus 81 ~~~~~~Y~~~~~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~-Gll~P~~G~i~ 135 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILA-GKQKPNLGRFD 135 (608)
T ss_dssp TTEEEECSTTSCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHH-TSSCCCTTTTC
T ss_pred CCeEEEECCCceeecCCCCCCCCCEEEEECCCCChHHHHHHHHh-cCCCCCCceEe
Confidence 45666664221 2222 12249999999999999999999999 99999999984
No 79
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.00 E-value=2.5e-11 Score=100.84 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=38.2
Q ss_pred eccccCCc---cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138 193 KRVESQDF---LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR 240 (320)
Q Consensus 193 ~~l~~~~~---~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~ 240 (320)
.+++++++ .|++++|+||||||||||+|+|+ |.+ |.+|+|.+.+..
T Consensus 21 ~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~-g~l-~~~G~V~~~g~~ 69 (158)
T 1htw_A 21 FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGML-QGI-GHQGNVKSPTYT 69 (158)
T ss_dssp HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHH-HHT-TCCSCCCCCTTT
T ss_pred HHHhccccccCCCCEEEEECCCCCCHHHHHHHHH-HhC-CCCCeEEECCEe
Confidence 34444444 39999999999999999999999 999 999999887543
No 80
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.97 E-value=2.8e-10 Score=112.46 Aligned_cols=80 Identities=16% Similarity=0.248 Sum_probs=69.7
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL 91 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~ 91 (320)
..+.+||||||.+|. +-......|.|++ ||+|.+|+++||+..+..|+..++|.+++|||||....+ ++..++++
T Consensus 100 ~~iNlIDTPGHvDF~~Ev~raL~~~DgAvl--Vvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad-~~~~~~~i 176 (548)
T 3vqt_A 100 RVVNLLDTPGHQDFSEDTYRVLTAVDSALV--VIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALH-PLDVMADI 176 (548)
T ss_dssp EEEEEECCCCGGGCSHHHHHHHHSCSEEEE--EEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCC-HHHHHHHH
T ss_pred EEEEEEeCCCcHHHHHHHHHHHHhcCceEE--EeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcc-hhHhhhhh
Confidence 468999999999999 6666778899999 999999999999999999999999999999999986543 45677777
Q ss_pred HHhhc
Q psy15138 92 VRILK 96 (320)
Q Consensus 92 ~~~l~ 96 (320)
...|.
T Consensus 177 ~~~l~ 181 (548)
T 3vqt_A 177 EQHLQ 181 (548)
T ss_dssp HHHHT
T ss_pred hhhcC
Confidence 77664
No 81
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.96 E-value=1.9e-10 Score=114.76 Aligned_cols=93 Identities=18% Similarity=0.248 Sum_probs=56.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccC-C-ccccceeecCCCCCCCHHh
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILG-F-DSVGNVVNKPEHGSLDWVK 279 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~-~-~~~~~~v~~~~~~~~~~~~ 279 (320)
|++++|+||||||||||+++|+ |+++|++|+... ...+ +..+|.... + .++.+++..........
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~-Gl~~p~~G~~~~-------~~~i---~~~~q~~~~~~~~tv~e~~~~~~~~~~~~-- 444 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLA-GALKPDEGQDIP-------KLNV---SMKPQKIAPKFPGTVRQLFFKKIRGQFLN-- 444 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHH-TSSCCSBCCCCC-------SCCE---EEECSSCCCCCCSBHHHHHHHHCSSTTTS--
T ss_pred ceEEEEECCCCCcHHHHHHHHh-cCCCCCCCcCcc-------CCcE---EEecccccccCCccHHHHHHHHhhccccc--
Confidence 5899999999999999999999 999999997321 1113 333343221 1 12222222111111111
Q ss_pred HHHHHHHHHHHhcccCCccccccccccccCCC
Q psy15138 280 ICERSAKVITFIDLAGHERYLKTTVFGMTGHV 311 (320)
Q Consensus 280 ~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~ 311 (320)
..... ++++.+++.+..++++++|||++
T Consensus 445 -~~~~~---~~l~~l~l~~~~~~~~~~LSGGq 472 (608)
T 3j16_B 445 -PQFQT---DVVKPLRIDDIIDQEVQHLSGGE 472 (608)
T ss_dssp -HHHHH---HTHHHHTSTTTSSSBSSSCCHHH
T ss_pred -HHHHH---HHHHHcCChhhhcCChhhCCHHH
Confidence 12223 34445566788899999999965
No 82
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.95 E-value=1.6e-09 Score=107.87 Aligned_cols=64 Identities=27% Similarity=0.248 Sum_probs=59.0
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~ 80 (320)
.+.|+|+|||++|. +-.+...+|.+++ |+++++|++++|.+++.+++..++|.++++||+|+..
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aIL--VvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAIL--IVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIH 136 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEE--EEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGST
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEE--EEECCCCccHhHHHHHHHHHHcCCeEEEEeccccccc
Confidence 48999999999999 5566788999988 9999999999999999999999999999999999863
No 83
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.95 E-value=7.8e-11 Score=116.13 Aligned_cols=32 Identities=31% Similarity=0.520 Sum_probs=31.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCcee
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHA 234 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i 234 (320)
|+++||+||||||||||+|+|+ |+++|++|++
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~-Gl~~p~~G~i 56 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILA-GEIIPNFGDP 56 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHT-TSSCCCTTCT
T ss_pred CCEEEEECCCCCcHHHHHHHHh-cCCCCCCCcc
Confidence 9999999999999999999999 9999999988
No 84
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.93 E-value=2.6e-10 Score=112.05 Aligned_cols=65 Identities=22% Similarity=0.270 Sum_probs=60.8
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP 80 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~ 80 (320)
..+.|+|+|||++|. +..+...+|.+++ |+++++|.+++|++|+..++..++|+++++||+|+..
T Consensus 52 ~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL--VVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 52 EKITFLDTPGHAAFSAMRARGTQVTDIVIL--VVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAE 118 (537)
T ss_dssp SCCBCEECSSSCCTTTSBBSSSBSBSSCEE--ECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTT
T ss_pred CEEEEEECCChHHHHHHHHHHHccCCEEEE--EEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence 368999999999999 7788999999999 9999999999999999999999999999999999864
No 85
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.91 E-value=4.3e-11 Score=103.41 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=25.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELD 228 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~ 228 (320)
|++++|+||||||||||+++|+ |+++
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~-gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLR-ERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH-HHST
T ss_pred CCEEEEECCCCCCHHHHHHHHH-hhCC
Confidence 9999999999999999999999 9986
No 86
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.91 E-value=2.5e-10 Score=118.67 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=62.0
Q ss_pred CeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccccchhhhhcCcceeeeccccCC
Q psy15138 184 GLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGF 260 (320)
Q Consensus 184 ~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~~~~~~~~g~v~~~~~~~~~~ 260 (320)
+++..|+...++++++|. |++++|+||||||||||+|+|+ | |.+ .+.........+++.|........
T Consensus 440 ~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~La-g------G~i--~g~~~~~~~~~~~v~q~~~~~~~~ 510 (986)
T 2iw3_A 440 EFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA-N------GQV--DGFPTQEECRTVYVEHDIDGTHSD 510 (986)
T ss_dssp EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHH-H------TCS--TTCCCTTTSCEEETTCCCCCCCTT
T ss_pred eEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHh-C------CCc--CCCccccceeEEEEcccccccccC
Confidence 345556666778888876 9999999999999999999998 4 322 111111111122333221111111
Q ss_pred ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCc-cccccccccccCCC
Q psy15138 261 DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHE-RYLKTTVFGMTGHV 311 (320)
Q Consensus 261 ~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~-~~~~~~~~~LSG~~ 311 (320)
.++.+++... .. .. . +++.+.++.+|+. ++.++++++|||++
T Consensus 511 ltv~e~l~~~-~~--~~---~---~~v~~~L~~lgL~~~~~~~~~~~LSGGq 553 (986)
T 2iw3_A 511 TSVLDFVFES-GV--GT---K---EAIKDKLIEFGFTDEMIAMPISALSGGW 553 (986)
T ss_dssp SBHHHHHHTT-CS--SC---H---HHHHHHHHHTTCCHHHHHSBGGGCCHHH
T ss_pred CcHHHHHHHh-hc--CH---H---HHHHHHHHHcCCChhhhcCCcccCCHHH
Confidence 1222333221 11 11 2 3344556667774 67899999999964
No 87
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.86 E-value=2.6e-09 Score=106.31 Aligned_cols=107 Identities=14% Similarity=0.091 Sum_probs=78.9
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL 91 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~ 91 (320)
..+.++|+|||++|. +..+...+|.+++ |+++++|+..+|++++..+...++|.++++||+|+.+.. .++..+++
T Consensus 71 ~~l~liDTPGh~dF~~ev~~~l~~aD~aIL--VVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~-~~~v~~ei 147 (599)
T 3cb4_D 71 YQLNFIDTPGHVDFSYEVSRSLAACEGALL--VVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD-PERVAEEI 147 (599)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHHHCSEEEE--EEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHH
T ss_pred EEEEEEECCCchHHHHHHHHHHHHCCEEEE--EEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc-HHHHHHHH
Confidence 357899999999998 5566778899988 999999999999999999999999999999999997643 34455666
Q ss_pred HHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138 92 VRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL 127 (320)
Q Consensus 92 ~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~ 127 (320)
...+.. ...+ -+..+..+....+++...+...
T Consensus 148 ~~~lg~---~~~~-vi~vSAktg~GI~~Ll~~I~~~ 179 (599)
T 3cb4_D 148 EDIVGI---DATD-AVRCSAKTGVGVQDVLERLVRD 179 (599)
T ss_dssp HHHTCC---CCTT-CEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHhCC---Ccce-EEEeecccCCCchhHHHHHhhc
Confidence 665421 1111 1223345556677776666554
No 88
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.85 E-value=2.6e-09 Score=106.20 Aligned_cols=107 Identities=14% Similarity=0.116 Sum_probs=78.2
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL 91 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~ 91 (320)
..+.++|+|||++|. +..+...+|.+++ |+++++|+..+|++++..+...++|.++++||+|+.... .+...+++
T Consensus 73 ~~inliDTPGh~dF~~ev~r~l~~aD~aIL--VVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~-~~~v~~el 149 (600)
T 2ywe_A 73 YKLHLIDTPGHVDFSYEVSRALAACEGALL--LIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD-VDRVKKQI 149 (600)
T ss_dssp EEEEEECCCCSGGGHHHHHHHHHTCSEEEE--EEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHH
T ss_pred EEEEEEECCCcHhHHHHHHHHHHhCCEEEE--EEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC-HHHHHHHH
Confidence 357899999999998 5556678899988 999999999999999999999999999999999997543 34555666
Q ss_pred HHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138 92 VRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL 127 (320)
Q Consensus 92 ~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~ 127 (320)
...+. +...+ -+..+..+....+++...+...
T Consensus 150 ~~~lg---~~~~~-vi~vSAktg~GI~~Lle~I~~~ 181 (600)
T 2ywe_A 150 EEVLG---LDPEE-AILASAKEGIGIEEILEAIVNR 181 (600)
T ss_dssp HHTSC---CCGGG-CEECBTTTTBSHHHHHHHHHHH
T ss_pred HHhhC---CCccc-EEEEEeecCCCchHHHHHHHHh
Confidence 65432 11101 1223345556677666666554
No 89
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.84 E-value=3.8e-10 Score=97.86 Aligned_cols=41 Identities=15% Similarity=0.047 Sum_probs=34.7
Q ss_pred eccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeee
Q psy15138 193 KRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQ 236 (320)
Q Consensus 193 ~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~ 236 (320)
.+++++ ..|++++|+||||||||||+++|+ |+ +|++|+|..
T Consensus 14 ~~l~~i-~~Ge~~~liG~nGsGKSTLl~~l~-Gl-~p~~G~I~~ 54 (208)
T 3b85_A 14 HYVDAI-DTNTIVFGLGPAGSGKTYLAMAKA-VQ-ALQSKQVSR 54 (208)
T ss_dssp HHHHHH-HHCSEEEEECCTTSSTTHHHHHHH-HH-HHHTTSCSE
T ss_pred HHHHhc-cCCCEEEEECCCCCCHHHHHHHHh-cC-CCcCCeeee
Confidence 344443 349999999999999999999999 99 999999954
No 90
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.84 E-value=1.8e-09 Score=99.30 Aligned_cols=32 Identities=34% Similarity=0.398 Sum_probs=29.2
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCce
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGH 233 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~ 233 (320)
.|++++|+||||||||||+++|+ |+++|..|.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~-gll~~~~G~ 120 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQ-ALLARWDHH 120 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHH-HHHHTSTTC
T ss_pred CCEEEEEECCCCchHHHHHHHHH-hhccccCCC
Confidence 48999999999999999999999 999987663
No 91
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.83 E-value=8.4e-11 Score=113.71 Aligned_cols=101 Identities=12% Similarity=-0.104 Sum_probs=61.5
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCc-e-eeeccccchhhhhcCcceeeeccccCC--ccccceeecCCCCCCC
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRG-H-ARQKLFRHKHEMESGRTSSVGNDILGF--DSVGNVVNKPEHGSLD 276 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G-~-i~~~~~~~~~~~~~g~v~~~~~~~~~~--~~~~~~v~~~~~~~~~ 276 (320)
.|++++|+||||||||||+|+|+ |+++|++| + +.+++. ....+++++|.......+ .+..+++ ++......
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~-Gl~~p~~G~~pI~vdg~---~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~ 211 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLC-SYALKFNAYQPLYINLD---PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSG 211 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHH-HTTHHHHCCCCEEEECC---TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHh-CcccccCCceeEEEcCC---ccCCeeeeccchhhcccccccchhhhh-cccccccC
Confidence 49999999999999999999999 99999999 8 888752 122345555543221111 1233233 21110000
Q ss_pred HHhHHHHHHHHHHHhcccCCccccccccccccCCCC
Q psy15138 277 WVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVP 312 (320)
Q Consensus 277 ~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~ 312 (320)
. . ...++.++++.+|+.+..+ +.+|||++.
T Consensus 212 ~-~---~~~~~~~ll~~~gl~~~~~--~~~LSgGq~ 241 (460)
T 2npi_A 212 A-T---LLHNKQPMVKNFGLERINE--NKDLYLECI 241 (460)
T ss_dssp C-C---SSCCBCCEECCCCSSSGGG--CHHHHHHHH
T ss_pred c-c---hHHHHHHHHHHhCCCcccc--hhhhhHHHH
Confidence 0 0 0122335667777777655 888888653
No 92
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.82 E-value=6.6e-10 Score=112.43 Aligned_cols=43 Identities=19% Similarity=0.137 Sum_probs=29.3
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHH---------------------HHHhcCcCCCCCceee
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLL---------------------GVLTHGELDNGRGHAR 235 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl---------------------~~l~~G~l~~~~G~i~ 235 (320)
..++++++|. |++++|+||||||||||+ +++. |+..|+.|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~-~l~~~~~~~i~ 97 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLG-QMEKPDVDAIE 97 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC---------------CCCSEEE
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhc-ccccCCcccee
Confidence 3468888876 999999999999999998 8888 99999866553
No 93
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.81 E-value=2.6e-09 Score=108.67 Aligned_cols=81 Identities=16% Similarity=0.108 Sum_probs=69.3
Q ss_pred CCceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHH
Q psy15138 13 ENAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKL 90 (320)
Q Consensus 13 ~~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~ 90 (320)
+..+.+||+|||.+|. .-......|.|++ ||+|.+|+++||+.-+..|...++|++++|||+|.... .++..+++
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~Dgavl--vVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a-~~~~~~~e 160 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVV--VFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA-NFLRVVEQ 160 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEE--EEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC-CHHHHHHH
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEE--EEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc-cHHHHHHH
Confidence 4569999999999999 6666778899999 99999999999999999999999999999999998643 34556777
Q ss_pred HHHhhc
Q psy15138 91 LVRILK 96 (320)
Q Consensus 91 ~~~~l~ 96 (320)
+...+.
T Consensus 161 i~~~l~ 166 (709)
T 4fn5_A 161 IKKRLG 166 (709)
T ss_dssp HHHHHC
T ss_pred hhhhcc
Confidence 776654
No 94
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.76 E-value=1.1e-08 Score=98.27 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=44.0
Q ss_pred CceEEEeCCCcc--------hhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCCh
Q psy15138 14 NAASVFETRIHE--------RDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPP 81 (320)
Q Consensus 14 ~~~~~~d~pgh~--------~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~ 81 (320)
..+.++|+||++ +|. .......+|.+++ |+++..|......+...+++..+.|+++|+||+|+...
T Consensus 51 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~--vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 51 YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIF--MVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp SCCEEEC---------CHHHHHHHHHHHHHHHCSEEEE--EEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC---
T ss_pred ceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEE--EEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccc
Confidence 358899999996 454 2223456787777 99999998887766666666678899999999998643
No 95
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.73 E-value=7.3e-09 Score=101.88 Aligned_cols=80 Identities=16% Similarity=0.224 Sum_probs=67.6
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL 91 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~ 91 (320)
..+.++|+|||++|. +......+|.+++ |+++.+|+..++++++..++..++|.++++||+|+..... ++.++++
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~~Il--VvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~-~~~~~~i 158 (529)
T 2h5e_A 82 CLVNLLDTPGHEDFSEDTYRTLTAVDCCLM--VIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDP-MELLDEV 158 (529)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEE--EEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCH-HHHHHHH
T ss_pred eEEEEEECCCChhHHHHHHHHHHHCCEEEE--EEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccH-HHHHHHH
Confidence 458899999999998 6667788999988 9999999999999999999999999999999999976544 3455666
Q ss_pred HHhhc
Q psy15138 92 VRILK 96 (320)
Q Consensus 92 ~~~l~ 96 (320)
.+.+.
T Consensus 159 ~~~l~ 163 (529)
T 2h5e_A 159 ENELK 163 (529)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 66553
No 96
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.70 E-value=4.5e-09 Score=91.54 Aligned_cols=38 Identities=18% Similarity=0.061 Sum_probs=29.1
Q ss_pred cccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeee
Q psy15138 195 VESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQ 236 (320)
Q Consensus 195 l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~ 236 (320)
+++++|. |+.++|+||||||||||+++|+ |++ | |.+.+
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~-g~~-p--G~i~~ 53 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLL-NEF-P--NYFYF 53 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHH-HHS-T--TTEEE
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHH-hhC-C--CcEEE
Confidence 4555554 9999999999999999999999 988 5 88877
No 97
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.70 E-value=1.7e-09 Score=96.99 Aligned_cols=62 Identities=8% Similarity=0.032 Sum_probs=40.7
Q ss_pred CCcchhh---ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHH
Q psy15138 22 RIHERDD---DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLK 89 (320)
Q Consensus 22 pgh~~~~---~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~ 89 (320)
|||.... +...+.++|.++. |++|..|...... .+.++ +.|.++++||+|+.+.+..+..++
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~--VvDar~P~~~~~~-~l~ll---~k~~iivlNK~DL~~~~~~~~~~~ 69 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVE--VRDARAPFATSAY-GVDFS---RKETIILLNKVDIADEKTTKKWVE 69 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEE--EEETTSTTTTSCT-TSCCT---TSEEEEEEECGGGSCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCEEEE--EeeCCCCCcCcCh-HHHhc---CCCcEEEEECccCCCHHHHHHHHH
Confidence 8998776 5666788999988 9999987654321 11111 779999999999998755444433
No 98
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.69 E-value=3.2e-10 Score=111.55 Aligned_cols=109 Identities=8% Similarity=-0.017 Sum_probs=67.5
Q ss_pred eeccccCCc----cCcEEEEEcCCCChHHHHHHH--HhcCcCCCCCceeeeccccchh-----hhhcCcceeeeccccCC
Q psy15138 192 RKRVESQDF----LEIRVAVVGNVDAGKSTLLGV--LTHGELDNGRGHARQKLFRHKH-----EMESGRTSSVGNDILGF 260 (320)
Q Consensus 192 ~~~l~~~~~----~g~~v~ivGpnGsGKSTLl~~--l~~G~l~~~~G~i~~~~~~~~~-----~~~~g~v~~~~~~~~~~ 260 (320)
...++++++ .|+.++|+||||||||||+++ ++ |+++|++|.+.+.+.+... ....|+++|.+...
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~-Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~--- 100 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN-GIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDE--- 100 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHH-HHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHT---
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH-HHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhcc---
Confidence 445666666 499999999999999999999 78 9999999999987654211 12345544433211
Q ss_pred ccccceeecCCCCCCCHHhHHHHHHHHHHHhcccCCccccccccccccCCCCCEEEE
Q psy15138 261 DSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGML 317 (320)
Q Consensus 261 ~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~l~l~gl~~~~~~~~~~LSG~~~~~~~l 317 (320)
.+........ .. +..++++.+++.+..++.+..|||++|+..+|
T Consensus 101 ---~~l~~~~~~~--~~--------~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lil 144 (525)
T 1tf7_A 101 ---GKLFILDASP--DP--------EGQEVVGGFDLSALIERINYAIQKYRARRVSI 144 (525)
T ss_dssp ---TSEEEEECCC--CS--------SCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred ---CcEEEEecCc--cc--------chhhhhcccCHHHHHHHHHHHHHHcCCCEEEE
Confidence 0011110000 00 01123344455667788888999888887655
No 99
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.68 E-value=2.8e-08 Score=96.00 Aligned_cols=65 Identities=17% Similarity=0.166 Sum_probs=49.8
Q ss_pred CceEEEeCCC--------cchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138 14 NAASVFETRI--------HERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP 80 (320)
Q Consensus 14 ~~~~~~d~pg--------h~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~ 80 (320)
..+.++|+|| +++|. .......+|.+++ |+++..|......+-+.+++..+.|+++++||+|+..
T Consensus 71 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~--VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 71 YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIF--MVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE 145 (456)
T ss_dssp SCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEE--EEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC----
T ss_pred ceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEE--EEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchh
Confidence 4588999999 77777 2223456788877 9999999998888877888878889999999999864
No 100
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.67 E-value=2.2e-09 Score=110.33 Aligned_cols=41 Identities=24% Similarity=0.190 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHcCC-C--cEEEE----eCCCCCChhHHHHHHHHHHH
Q psy15138 53 GMTKEHLGLALALSV-P--VFVVV----TKIDMCPPNVLQDTLKLLVR 93 (320)
Q Consensus 53 ~~t~~~l~l~~~l~i-~--~~v~l----nk~Dl~~~~~le~~l~~~~~ 93 (320)
+..+.+++||++|.. | .++++ |.+|-.+.+||.+.+.+++.
T Consensus 382 GGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~ 429 (842)
T 2vf7_A 382 PGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR 429 (842)
T ss_dssp HHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH
Confidence 577789999999999 5 37777 99999999999998888865
No 101
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.67 E-value=1.6e-08 Score=102.70 Aligned_cols=81 Identities=16% Similarity=0.122 Sum_probs=68.7
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL 91 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~ 91 (320)
..+.|+|+|||++|. +......+|.+++ |+++.+|+..+|++++..+...++|.++++||+|+...+ +++.++++
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~aIl--VvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~-~~~~~~~l 158 (704)
T 2rdo_7 82 HRINIIDTPGHVDFTIEVERSMRVLDGAVM--VYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGAN-FLKVVNQI 158 (704)
T ss_pred eeEEEEeCCCccchHHHHHHHHHHCCEEEE--EEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCccccc-HHHHHHHH
Confidence 568899999999998 5555677899988 999999999999999999999999999999999997643 56677777
Q ss_pred HHhhcC
Q psy15138 92 VRILKS 97 (320)
Q Consensus 92 ~~~l~~ 97 (320)
...+..
T Consensus 159 ~~~l~~ 164 (704)
T 2rdo_7 159 KTRLGA 164 (704)
T ss_pred HHHhCC
Confidence 776643
No 102
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.67 E-value=1.4e-08 Score=92.08 Aligned_cols=65 Identities=15% Similarity=0.004 Sum_probs=41.7
Q ss_pred EEeCCCcchhh---ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCC-CcEEEEeCCCCCChhHHHHH
Q psy15138 18 VFETRIHERDD---DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSV-PVFVVVTKIDMCPPNVLQDT 87 (320)
Q Consensus 18 ~~d~pgh~~~~---~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i-~~~v~lnk~Dl~~~~~le~~ 87 (320)
|=+.|||..-. +......+|.++. |++|..|.... +..+.+.++- |.++++||+|+.+.+..+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~--VvDAr~p~~~~---~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~ 71 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYE--LVDARIPMSSR---NPMIEDILKNKPRIMLLNKADKADAAVTQQW 71 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEE--EEETTSTTTTS---CHHHHHHCSSSCEEEEEECGGGSCHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEE--EEeCCCCCccC---CHHHHHHHCCCCEEEEEECcccCCHHHHHHH
Confidence 34789998543 5556788999888 99999866542 2334455554 89999999999986554433
No 103
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.61 E-value=2.8e-08 Score=97.71 Aligned_cols=80 Identities=15% Similarity=0.208 Sum_probs=66.4
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL 91 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~ 91 (320)
..+.++|+|||++|. .......+|.+++ |+++..|...++.+++..++..++|.++++||+|+.... .++.++++
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~all--VvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~-~~~~l~ei 158 (528)
T 3tr5_A 82 YLINLLDTPGHADFTEDTYRTLTAVDSALM--VIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRP-SIELLDEI 158 (528)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEE--EEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSC-HHHHHHHH
T ss_pred EEEEEEECCCchhHHHHHHHHHHhCCEEEE--EEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc-HHHHHHHH
Confidence 458899999999999 5555678899988 999999999999999999999999999999999997543 33445666
Q ss_pred HHhhc
Q psy15138 92 VRILK 96 (320)
Q Consensus 92 ~~~l~ 96 (320)
.+.+.
T Consensus 159 ~~~l~ 163 (528)
T 3tr5_A 159 ESILR 163 (528)
T ss_dssp HHHHC
T ss_pred HHhhC
Confidence 66553
No 104
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.58 E-value=1.2e-08 Score=88.96 Aligned_cols=36 Identities=19% Similarity=0.099 Sum_probs=31.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCC--CCceeeecc
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDN--GRGHARQKL 238 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~--~~G~i~~~~ 238 (320)
|+.++|+||||||||||+++|+ |.++| ..|.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~-g~~~p~~~~g~v~~tt 53 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALL-KTQPLYDTQVSVSHTT 53 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH-HHSCTTTEEECCCEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHh-ccCCCCceEEEEEecC
Confidence 8899999999999999999999 99986 578777654
No 105
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.55 E-value=4.1e-08 Score=99.31 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=35.7
Q ss_pred chhHHHHHHHHHHcCC-Cc--EEEE----eCCCCCChhHHHHHHHHHHH
Q psy15138 52 VGMTKEHLGLALALSV-PV--FVVV----TKIDMCPPNVLQDTLKLLVR 93 (320)
Q Consensus 52 ~~~t~~~l~l~~~l~i-~~--~v~l----nk~Dl~~~~~le~~l~~~~~ 93 (320)
.+..+.+++||++|-. |. ++++ +.+|..+..|+.+.+.++.+
T Consensus 204 SGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~ 252 (670)
T 3ux8_A 204 SGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD 252 (670)
T ss_dssp CHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH
Confidence 3577889999999988 65 7777 99999999999999888864
No 106
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.55 E-value=1e-08 Score=91.94 Aligned_cols=43 Identities=19% Similarity=0.085 Sum_probs=36.4
Q ss_pred cccCCc-cCcEEEEEcCCCChHHHHHHHHhcCcCCCC-Cceeeecc
Q psy15138 195 VESQDF-LEIRVAVVGNVDAGKSTLLGVLTHGELDNG-RGHARQKL 238 (320)
Q Consensus 195 l~~~~~-~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~-~G~i~~~~ 238 (320)
+++++. .|+.++|+||||||||||+++|+ |+++|. +|.|.+..
T Consensus 17 l~~i~i~~g~~v~i~Gp~GsGKSTll~~l~-g~~~~~~~G~I~~~g 61 (261)
T 2eyu_A 17 VLELCHRKMGLILVTGPTGSGKSTTIASMI-DYINQTKSYHIITIE 61 (261)
T ss_dssp HHHGGGCSSEEEEEECSTTCSHHHHHHHHH-HHHHHHCCCEEEEEE
T ss_pred HHHHhhCCCCEEEEECCCCccHHHHHHHHH-HhCCCCCCCEEEEcC
Confidence 333334 39999999999999999999999 999997 99998764
No 107
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.55 E-value=2.5e-08 Score=96.53 Aligned_cols=37 Identities=19% Similarity=0.107 Sum_probs=34.2
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR 240 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~ 240 (320)
++++|+||||||||||+++|+ |+++|++|+|.+++.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~-Gl~~p~~G~I~~~g~~ 66 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFV-TALIPDLTLLNFRNTT 66 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHH-HHHCCCTTTCCCCCTT
T ss_pred ceEEEECCCCCcHHHHHHHHh-cCCCCCCCEEEECCEE
Confidence 789999999999999999999 9999999999987543
No 108
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.55 E-value=2.2e-08 Score=93.42 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=45.3
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF 239 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~ 239 (320)
.++..++.+.|.. ...+++.+ +. |++++|+||||||||||+++|+ |+.+|+.|.+.+.+.
T Consensus 45 ~i~~~~l~~~~~t---g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~-g~~~~~~g~i~~~G~ 107 (347)
T 2obl_A 45 PLLRQVIDQPFIL---GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMIC-NGASADIIVLALIGE 107 (347)
T ss_dssp STTCCCCCSEECC---SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHH-HHSCCSEEEEEEESC
T ss_pred CeeecccceecCC---CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHh-cCCCCCEEEEEEecc
Confidence 3444544443321 34566666 54 9999999999999999999999 999999998877654
No 109
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.52 E-value=2.8e-08 Score=90.92 Aligned_cols=39 Identities=26% Similarity=0.227 Sum_probs=35.6
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR 240 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~ 240 (320)
.|++++|+||||||||||++.|+ |+++|.+|++.+...+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~La-g~l~~~~g~V~l~g~d 137 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLA-HRLKNEGTKVLMAAGD 137 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHH-HHHHHTTCCEEEECCC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH-HHHHHcCCeEEEEeec
Confidence 48999999999999999999999 9999999999887543
No 110
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.52 E-value=8.7e-09 Score=94.26 Aligned_cols=51 Identities=18% Similarity=0.060 Sum_probs=38.7
Q ss_pred eeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeee
Q psy15138 177 RQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQ 236 (320)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~ 236 (320)
+++++++.|. ..+++++++. |++++|+||||||||||+++|+ |++ +|+|..
T Consensus 103 ~~~~vs~~y~-----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~-gl~---~G~I~~ 156 (305)
T 2v9p_A 103 NYQNIELITF-----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLI-HFL---GGSVLS 156 (305)
T ss_dssp HHTTCCHHHH-----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHH-HHH---TCEEEC
T ss_pred EEEEEEEEcC-----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHh-hhc---CceEEE
Confidence 4444444442 3455555554 9999999999999999999999 998 798864
No 111
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.52 E-value=2.1e-08 Score=95.45 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=32.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF 239 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~ 239 (320)
.++|+||||||||||+|+|+ |+++|++|++...+.
T Consensus 71 ~valvG~nGaGKSTLln~L~-Gl~~p~~GsI~~~g~ 105 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLR-GIGNEEEGAAKTGVV 105 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHH-TCCTTSTTSCCCCC-
T ss_pred EEEEECCCCCcHHHHHHHHh-CCCCccCceEEECCe
Confidence 99999999999999999999 999999999987653
No 112
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.51 E-value=2.4e-08 Score=95.97 Aligned_cols=60 Identities=15% Similarity=0.118 Sum_probs=46.5
Q ss_pred eeeeeecCCCeeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138 175 LLRQRKLDNGLTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF 239 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~ 239 (320)
.++++++++.|.. ..++++++ +. |++++|+||||||||||+++|+ |+.+|+.|.+.+.+.
T Consensus 131 ~l~~~~v~~~~~t---g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Ia-g~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 131 PLQRTPIEHVLDT---GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMA-RYTRADVIVVGLIGE 193 (438)
T ss_dssp TTTSCCCCSBCCC---SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHH-HHSCCSEEEEEEESC
T ss_pred ceEEeccceecCC---CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHh-cccCCCeEEEEEece
Confidence 4555555555532 23455555 44 9999999999999999999999 999999999988765
No 113
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.50 E-value=5.2e-08 Score=90.23 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=35.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF 239 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~ 239 (320)
|+.++|+||||||||||+++|+ |+++|++|.+.+++.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~-g~~~~~~g~i~i~~~ 207 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIM-EFIPKEERIISIEDT 207 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGG-GGSCTTSCEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHh-CCCcCCCcEEEECCe
Confidence 9999999999999999999999 999999999998753
No 114
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.47 E-value=3.1e-08 Score=82.78 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=29.7
Q ss_pred cCcEEEEEcCCCChHHHHHH------------HHhcCcCCCCCceeeec
Q psy15138 201 LEIRVAVVGNVDAGKSTLLG------------VLTHGELDNGRGHARQK 237 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~------------~l~~G~l~~~~G~i~~~ 237 (320)
.|+.++|+||||||||||++ .+. |.+.++.|...+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~-g~~~~~~~~~~~~ 55 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCR-GLMSDDENDQTVT 55 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHH-HHHCSSTTCGGGH
T ss_pred CCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHH-HHhcCcccchhhH
Confidence 38999999999999999999 676 7777777765543
No 115
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.47 E-value=2.4e-08 Score=85.19 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=31.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF 239 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~ 239 (320)
|++++|+||||||||||+++|+ |+++ ++| +.+++.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~-g~~~-~~G-i~~~g~ 35 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKAS-EVLK-SSG-VPVDGF 35 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHH-HHHH-HTT-CCCEEE
T ss_pred CCEEEEECCCCChHHHHHHHHH-hhcc-cCC-EEEcCE
Confidence 6789999999999999999999 9998 889 877643
No 116
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.47 E-value=5e-08 Score=89.32 Aligned_cols=39 Identities=23% Similarity=0.024 Sum_probs=35.6
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR 240 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~ 240 (320)
.|++++|+||||||||||++.|+ |+++|++|++.+...+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~La-gll~~~~g~V~l~g~D 139 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLG-RYYQNLGKKVMFCAGD 139 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH-HHHHTTTCCEEEECCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHH-HHHHhcCCEEEEEeec
Confidence 48899999999999999999999 9999999999887543
No 117
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.46 E-value=5.1e-08 Score=82.44 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELD 228 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~ 228 (320)
|+.++|+||||||||||+++|+ |+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~-~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLF-AEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHH-HHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHH-hhCC
Confidence 4568999999999999999999 9987
No 118
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.46 E-value=2.9e-07 Score=75.99 Aligned_cols=111 Identities=24% Similarity=0.278 Sum_probs=72.3
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL 91 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~ 91 (320)
..+.++|+|||++|. .......+|.+++ |++++++..+.+.+.+..+...++|.++|+||+|+.... .++....+
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~ 131 (178)
T 2lkc_A 55 KKITFLDTPGHEAFTTMRARGAQVTDIVIL--VVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN-PDRVMQEL 131 (178)
T ss_dssp EEEEESCCCSSSSSSCSCCSSCCCCCEEEE--EEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC-HHHHHHHH
T ss_pred ceEEEEECCCCHHHHHHHHHHHhhCCEEEE--EEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC-HHHHHHHH
Confidence 347788999999999 4445667788877 999999988888888887777788999999999997632 12222222
Q ss_pred HHhhcCCCccccC--cccc-ccCCchhHHHHHHHHHHHHHH
Q psy15138 92 VRILKSPGCRKVP--VMNC-LISPTEEQFDLLQKKIKSLID 129 (320)
Q Consensus 92 ~~~l~~~~~~~i~--~kl~-~~~gnyd~~~~l~~q~~~~~~ 129 (320)
... ........ ..+. .+..+.+.++++...+.....
T Consensus 132 ~~~--~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 132 MEY--NLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSE 170 (178)
T ss_dssp TTT--TCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred Hhc--CcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhh
Confidence 111 00111111 1222 234666777777777665433
No 119
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.45 E-value=9.2e-08 Score=89.65 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=34.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL 238 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~ 238 (320)
|+.++|+||||||||||+++|+ |+++|++|.|.+..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~-~~~~~~~g~I~ie~ 210 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALM-QEIPFDQRLITIED 210 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHH-TTSCTTSCEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHH-hcCCCCceEEEECC
Confidence 9999999999999999999999 99999999999874
No 120
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.44 E-value=1.2e-07 Score=79.85 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL 238 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~ 238 (320)
|+.++|+||||||||||+++|+ |. ++.|.+.++.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La-~~--~~~g~i~i~~ 42 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALA-NL--PGVPKVHFHS 42 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHH-TC--SSSCEEEECT
T ss_pred CeEEEEECCCCCCHHHHHHHHH-hc--cCCCeEEEcc
Confidence 8889999999999999999999 87 6788877754
No 121
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.44 E-value=5.5e-08 Score=83.26 Aligned_cols=26 Identities=42% Similarity=0.391 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELD 228 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~ 228 (320)
|+.++|+||||||||||+++|. |+++
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~-~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLF-QEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHH-HHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHH-hhCc
Confidence 6779999999999999999999 9875
No 122
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.43 E-value=8.5e-08 Score=82.36 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=25.4
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCC
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDN 229 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~ 229 (320)
.|++++|+||||||||||+++|+ |++.|
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~-~~~~~ 32 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALA-RTLGE 32 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH-HHHGG
T ss_pred CcEEEEEECCCCCCHHHHHHHHH-HHhCC
Confidence 47889999999999999999999 88765
No 123
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.43 E-value=5.3e-08 Score=83.87 Aligned_cols=37 Identities=27% Similarity=0.162 Sum_probs=31.7
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCC---CCceeeecc
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDN---GRGHARQKL 238 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~---~~G~i~~~~ 238 (320)
.|++++|+||||||||||+++|+ |+++| ..|.+.++.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~-~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLA-AALSAQGLPAEVVPMDG 60 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHH-HHHHHTTCCEEEEESGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHH-HHHhhcCCceEEEecCC
Confidence 48889999999999999999999 99985 467777653
No 124
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.42 E-value=3.7e-07 Score=78.64 Aligned_cols=113 Identities=14% Similarity=0.124 Sum_probs=76.3
Q ss_pred CceEEEeCCCcc----------hhh-----ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCC
Q psy15138 14 NAASVFETRIHE----------RDD-----DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDM 78 (320)
Q Consensus 14 ~~~~~~d~pgh~----------~~~-----~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl 78 (320)
..+.|+|+|||. +|. .+.....+|.+++ |+++.++.....++.+..++..++|+++|+||+|+
T Consensus 79 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~--v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl 156 (223)
T 4dhe_A 79 PVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMIL--MMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDK 156 (223)
T ss_dssp CSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEE--EEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGG
T ss_pred CcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEE--EEeCCCCCCHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 468899999973 222 3444666788877 99999988888888888888888999999999999
Q ss_pred CChhHHHHHHHHHHHhhcCC---C-ccccCccccccCCchhHHHHHHHHHHHHHH
Q psy15138 79 CPPNVLQDTLKLLVRILKSP---G-CRKVPVMNCLISPTEEQFDLLQKKIKSLID 129 (320)
Q Consensus 79 ~~~~~le~~l~~~~~~l~~~---~-~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~ 129 (320)
.+...++..++++...+... . ....+. +.....+.++++++...+.+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 157 LTRQESINALRATQKSLDAYRDAGYAGKLTV-QLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCSCEEE-EEEBTTTTBSHHHHHHHHHHHHC
T ss_pred CChhhHHHHHHHHHHHHHhhhhcccCCCCeE-EEeecCCCcCHHHHHHHHHHhcC
Confidence 98777666666555544321 0 011111 11334566677777777766543
No 125
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.41 E-value=7.5e-08 Score=90.06 Aligned_cols=39 Identities=26% Similarity=0.227 Sum_probs=35.6
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR 240 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~ 240 (320)
.|++++|+||||||||||++.|+ |+++|.+|++.+...+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~La-g~l~~~~G~V~l~g~D 194 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLA-HRLKNEGTKVLMAAGD 194 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHH-HHHHHTTCCEEEECCC
T ss_pred CCeEEEEEcCCCChHHHHHHHHH-hhccccCCEEEEeccc
Confidence 48999999999999999999999 9999999999887543
No 126
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.40 E-value=1.5e-07 Score=95.33 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=67.3
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL 91 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~ 91 (320)
..+.++|+|||++|. .......+|.+++ |+++.+|...++.+++..++..++|.++++||+|+...+ ++..++++
T Consensus 77 ~~i~liDTPG~~df~~~~~~~l~~aD~~il--VvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~-~~~~~~~l 153 (691)
T 1dar_A 77 HRINIIDTPGHVDFTIEVERSMRVLDGAIV--VFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGAD-LWLVIRTM 153 (691)
T ss_dssp EEEEEECCCSSTTCHHHHHHHHHHCSEEEE--EEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCC-HHHHHHHH
T ss_pred eEEEEEECcCccchHHHHHHHHHHCCEEEE--EEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCC-HHHHHHHH
Confidence 458899999999998 4444567888888 999999999999999999999999999999999997543 56677777
Q ss_pred HHhhc
Q psy15138 92 VRILK 96 (320)
Q Consensus 92 ~~~l~ 96 (320)
...+.
T Consensus 154 ~~~l~ 158 (691)
T 1dar_A 154 QERLG 158 (691)
T ss_dssp HHTTC
T ss_pred HHHhC
Confidence 77654
No 127
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.38 E-value=1.1e-07 Score=87.01 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=32.7
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCC--CCCceeee
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELD--NGRGHARQ 236 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~--~~~G~i~~ 236 (320)
.|++++|+||||||||||+++|+ |++. |++|.+.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~-~~l~~~~~~G~i~v 115 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQ-ALLSRWPEHRRVEL 115 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHH-HHHTTSTTCCCEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HHHhhCCCCCeEEE
Confidence 37889999999999999999999 9988 99999987
No 128
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.36 E-value=1.9e-07 Score=94.35 Aligned_cols=79 Identities=24% Similarity=0.164 Sum_probs=67.8
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL 91 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~ 91 (320)
..+.++|+|||++|. +......+|.+++ |+++.+|+.+++++++..++..++|.++++||+|+. ...++..+++
T Consensus 74 ~~~nliDTpG~~~f~~~~~~~l~~ad~~il--VvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~--~~~~~~~~~l 149 (665)
T 2dy1_A 74 HRVFLLDAPGYGDFVGEIRGALEAADAALV--AVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG--GDYYALLEDL 149 (665)
T ss_dssp EEEEEEECCCSGGGHHHHHHHHHHCSEEEE--EEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC--CCHHHHHHHH
T ss_pred EEEEEEeCCCccchHHHHHHHHhhcCcEEE--EEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh--hhHHHHHHHH
Confidence 357889999999998 6666778888988 999999999999999999999999999999999997 4566677777
Q ss_pred HHhhc
Q psy15138 92 VRILK 96 (320)
Q Consensus 92 ~~~l~ 96 (320)
...+.
T Consensus 150 ~~~l~ 154 (665)
T 2dy1_A 150 RSTLG 154 (665)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 77654
No 129
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.36 E-value=3e-08 Score=92.12 Aligned_cols=46 Identities=22% Similarity=0.191 Sum_probs=38.5
Q ss_pred eccccCCc---cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138 193 KRVESQDF---LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF 239 (320)
Q Consensus 193 ~~l~~~~~---~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~ 239 (320)
.+++++++ .|++++|+||||||||||+++|+ |++.|.+|.+.+...
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~-g~~~~~~g~v~i~~~ 91 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALG-SLLTAAGHKVAVLAV 91 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHH-HHHHHTTCCEEEEEE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHH-HhhhhCCCEEEEEEE
Confidence 34455544 39999999999999999999999 999999999987643
No 130
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.36 E-value=1.2e-07 Score=91.79 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=34.4
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL 238 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~ 238 (320)
.|++++|+||||||||||+++|+ |++++.+|.|.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LA-gll~~~~G~V~l~g 328 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLA-RQFEQQGKSVMLAA 328 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHH-HHHHHTTCCEEEEC
T ss_pred CCeEEEEECCCcccHHHHHHHHH-HHhhhcCCeEEEec
Confidence 39999999999999999999999 99999999998863
No 131
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.34 E-value=1.1e-07 Score=87.81 Aligned_cols=39 Identities=21% Similarity=0.087 Sum_probs=35.5
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecccc
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFR 240 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~~ 240 (320)
.|++++|+||||||||||++.|+ |.++|.+|++.+...+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~La-g~l~~~~g~V~l~g~D 166 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLA-NWLKNHGFSVVIAASD 166 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH-HHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHH-HHHHhcCCEEEEEeec
Confidence 48999999999999999999999 9999999999887443
No 132
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.33 E-value=1.3e-07 Score=81.83 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=27.9
Q ss_pred cccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCC
Q psy15138 195 VESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDN 229 (320)
Q Consensus 195 l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~ 229 (320)
+......|+.++|+||||||||||+++|+ |...+
T Consensus 18 l~ggi~~G~~~~l~G~nGsGKSTll~~l~-g~~~~ 51 (231)
T 4a74_A 18 LGGGIETQAITEVFGEFGSGKTQLAHTLA-VMVQL 51 (231)
T ss_dssp TTSSEESSEEEEEEESTTSSHHHHHHHHH-HHTTS
T ss_pred hcCCCCCCcEEEEECCCCCCHHHHHHHHH-HHHhc
Confidence 33344459999999999999999999999 86554
No 133
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.33 E-value=1.3e-07 Score=83.48 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=23.9
Q ss_pred eeccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 192 RKRVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 192 ~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
..++++++|. |++++|+||||||||||+++|+ |.+
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~-~~l 49 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIM-ELL 49 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHH-HHH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHH-HHh
Confidence 4466677665 9999999999999999999999 876
No 134
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.33 E-value=1.3e-06 Score=73.10 Aligned_cols=110 Identities=15% Similarity=0.061 Sum_probs=76.1
Q ss_pred CceEEEeCCC----------cchhh-----ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCC
Q psy15138 14 NAASVFETRI----------HERDD-----DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDM 78 (320)
Q Consensus 14 ~~~~~~d~pg----------h~~~~-----~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl 78 (320)
..+.++|+|| +++|. .+.++..+|.+++ |++++.+......+.+..++..++|+++|+||+|+
T Consensus 68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~--v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl 145 (195)
T 3pqc_A 68 SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFL--LVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDK 145 (195)
T ss_dssp TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEE--EEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEE--EecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhc
Confidence 4578999999 55555 3444567788877 99999888777777777778888999999999999
Q ss_pred CChhHHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHH
Q psy15138 79 CPPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLI 128 (320)
Q Consensus 79 ~~~~~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~ 128 (320)
.+....+...+++...+.... ..++ +-....+.+.++++...+.+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~Sa~~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 146 VKMSERAKKLEEHRKVFSKYG--EYTI-IPTSSVTGEGISELLDLISTLL 192 (195)
T ss_dssp SCGGGHHHHHHHHHHHHHSSC--CSCE-EECCTTTCTTHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhhcC--CCce-EEEecCCCCCHHHHHHHHHHHh
Confidence 887777777777776654311 1111 1123355566777666665543
No 135
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.32 E-value=1.8e-07 Score=78.69 Aligned_cols=35 Identities=9% Similarity=0.109 Sum_probs=28.5
Q ss_pred ccCcEEEEEcCCCChHHHHHHHHhcCcCCC-CCceee
Q psy15138 200 FLEIRVAVVGNVDAGKSTLLGVLTHGELDN-GRGHAR 235 (320)
Q Consensus 200 ~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~-~~G~i~ 235 (320)
+.|+.++|+||||||||||++.|. +.+++ ..|.+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~-~~~~~~~~~~i~ 38 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLI-TKHPDRFAYPIP 38 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHH-HHCTTTEECCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH-hhCCccEEEeee
Confidence 458889999999999999999999 88763 344443
No 136
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.32 E-value=1.2e-07 Score=88.88 Aligned_cols=34 Identities=26% Similarity=0.400 Sum_probs=32.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCC----ceeee
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGR----GHARQ 236 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~----G~i~~ 236 (320)
|++++|+||||||||||+++|+ |+++|.+ |.+.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~-gl~~~~~~~e~G~i~i 207 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLA-AVFNTTSAWEYGREFV 207 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHH-HHTTCEEECCTTHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHH-HHhCCCcchhhHHHHH
Confidence 8999999999999999999999 9999998 88765
No 137
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.32 E-value=2.7e-08 Score=87.28 Aligned_cols=36 Identities=22% Similarity=0.199 Sum_probs=30.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL 238 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~ 238 (320)
.+.++|+||||||||||+++|+ |.+.|++|.|.+++
T Consensus 27 ~~~~~i~GpnGsGKSTll~~i~-g~~~~~~G~i~~~g 62 (227)
T 1qhl_A 27 ELVTTLSGGNGAGKSTTMAAFV-TALIPDLTLLHFRN 62 (227)
T ss_dssp HHHHHHHSCCSHHHHHHHHHHH-HHHSCCTTTC----
T ss_pred CcEEEEECCCCCCHHHHHHHHh-cccccCCCeEEECC
Confidence 3568999999999999999999 99999999998764
No 138
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.32 E-value=1.9e-07 Score=79.54 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=24.7
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELD 228 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~ 228 (320)
.|+.++|+||||||||||+++|+ |+++
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~-~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALV-KALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHH-HHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHH-hhCC
Confidence 38889999999999999999999 9864
No 139
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.31 E-value=3.2e-07 Score=93.06 Aligned_cols=80 Identities=20% Similarity=0.185 Sum_probs=65.8
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL 91 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~ 91 (320)
..+.++|+|||.+|. .......+|.+++ |+++.+|...++++.+..++..++|.++++||+|+...+ ++..++++
T Consensus 75 ~~i~liDTPG~~df~~~~~~~l~~aD~~ll--VvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~-~~~~~~~l 151 (693)
T 2xex_A 75 HRVNIIDTPGHVDFTVEVERSLRVLDGAVT--VLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGAN-FEYSVSTL 151 (693)
T ss_dssp EEEEEECCCCCSSCCHHHHHHHHHCSEEEE--EEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCC-HHHHHHHH
T ss_pred eeEEEEECcCCcchHHHHHHHHHHCCEEEE--EECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccc-hHHHHHHH
Confidence 348899999999998 4444556888888 999999999999999999999999999999999997643 45566777
Q ss_pred HHhhc
Q psy15138 92 VRILK 96 (320)
Q Consensus 92 ~~~l~ 96 (320)
...+.
T Consensus 152 ~~~l~ 156 (693)
T 2xex_A 152 HDRLQ 156 (693)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 76654
No 140
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.29 E-value=2.2e-07 Score=87.32 Aligned_cols=62 Identities=16% Similarity=0.051 Sum_probs=31.0
Q ss_pred CceEEEeCCCcchhh-ccCCC-CccchhhhccceecCCCCchhHHHHHHHHHHc-CCCcEEEEeCCCCCCh
Q psy15138 14 NAASVFETRIHERDD-DLPEA-SPADHSMLQSKVGANAGIVGMTKEHLGLALAL-SVPVFVVVTKIDMCPP 81 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~-~~~~~-~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l-~i~~~v~lnk~Dl~~~ 81 (320)
+.+.-+|+| +++|. .+.-. ...|.++. |+++.+....... .+.+.+ +.|.++|+||+|+.+.
T Consensus 49 ~~~~~v~~~-~e~f~~~L~~~~~~~~lil~--VvD~~d~~~s~~~---~l~~~l~~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 49 NEVQDVPLD-DDDFLSMLHRIGESKALVVN--IVDIFDFNGSFIP---GLPRFAADNPILLVGNKADLLPR 113 (369)
T ss_dssp -----------CHHHHHHHHHHHHCCEEEE--EEETTCSGGGCCS---SHHHHCTTSCEEEEEECGGGSCT
T ss_pred ccccCCcCC-HHHHHHHHHHhhccCcEEEE--EEECCCCCCchhh---HHHHHhCCCCEEEEEEChhcCCC
Confidence 334555666 78888 33322 33445555 9999875532111 112223 5589999999999754
No 141
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.27 E-value=3.1e-07 Score=80.18 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=17.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
|++++|+||||||||||+++|+.|++
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 89999999999999999999973455
No 142
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.27 E-value=2.5e-07 Score=78.88 Aligned_cols=55 Identities=24% Similarity=0.294 Sum_probs=29.9
Q ss_pred eeeeecCCCeeeeecceeccccCCc-cCcEEEEEcCCCChHHHHHHHHhcCcC-----CCCCceeee
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDF-LEIRVAVVGNVDAGKSTLLGVLTHGEL-----DNGRGHARQ 236 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~v~ivGpnGsGKSTLl~~l~~G~l-----~~~~G~i~~ 236 (320)
++++++.+.|. ...+++... .|.+++|+|+||||||||++.|+ |.. .|+.|.+..
T Consensus 4 l~~~~~~~~~~-----~~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~-g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 4 LNYQQTHFVMS-----APDIRHLPSDTGIEVAFAGRSNAGKSSALNTLT-NQKSLARTSKTPGRTQL 64 (210)
T ss_dssp -------CEEE-----ESSGGGSSCSCSEEEEEEECTTSSHHHHHTTTC-CC-------------CC
T ss_pred hhhhhhhheee-----cCCHhHCCCCCCcEEEEECCCCCCHHHHHHHHh-CCCccccccCCCcccee
Confidence 45555555553 134444333 39999999999999999999999 988 777787653
No 143
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.27 E-value=1.8e-07 Score=96.85 Aligned_cols=80 Identities=18% Similarity=0.164 Sum_probs=63.6
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC------hh---
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP------PN--- 82 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~------~~--- 82 (320)
..+.++|+|||++|. .......+|.+++ |+++.+|...++...+..+...++|+++++||+|+.. ++
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ail--VvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~e~~ 175 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALV--VVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLY 175 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEE--EEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHHHH
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEE--EEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHHHHH
Confidence 357899999999998 4444567888988 9999999999999888888888999999999999862 22
Q ss_pred -HHHHHHHHHHHhh
Q psy15138 83 -VLQDTLKLLVRIL 95 (320)
Q Consensus 83 -~le~~l~~~~~~l 95 (320)
.++..++++...+
T Consensus 176 ~~~~~~~~~i~~~l 189 (842)
T 1n0u_A 176 QTFARTVESVNVIV 189 (842)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 3455566665554
No 144
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.26 E-value=3e-07 Score=77.59 Aligned_cols=33 Identities=21% Similarity=0.098 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL 238 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~ 238 (320)
|+.++|+||||||||||+++|+ + +..|.+.++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~-~---~~~g~~~i~~ 34 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLA-A---QLDNSAYIEG 34 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH-H---HSSSEEEEEH
T ss_pred CeEEEEECCCCCcHHHHHHHHh-c---ccCCeEEEcc
Confidence 5679999999999999999999 6 5578777764
No 145
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.23 E-value=4.3e-07 Score=82.91 Aligned_cols=48 Identities=29% Similarity=0.275 Sum_probs=21.3
Q ss_pred eeeeecceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCc-CCCCCceeeec
Q psy15138 185 LTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGE-LDNGRGHARQK 237 (320)
Q Consensus 185 ~~~~~~~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~-l~~~~G~i~~~ 237 (320)
++..|+...++++++| .++|+||||+|||||++.|. |. +.|.+| +...
T Consensus 4 l~~~~~~~~~l~~~~~---~I~lvG~nG~GKSTLl~~L~-g~~~~~~~g-i~~~ 52 (301)
T 2qnr_A 4 LPNQVHRKSVKKGFEF---TLMVVGESGLGKSTLINSLF-LTDLYPERV-ISGA 52 (301)
T ss_dssp --------------CE---EEEEEEETTSSHHHHHHHHH-C-------------
T ss_pred CcceECCEEEEcCCCE---EEEEECCCCCCHHHHHHHHh-CCCccCCCC-cccC
Confidence 3344455566777766 47999999999999999999 97 888888 5543
No 146
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.23 E-value=1.5e-07 Score=78.89 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=30.6
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcCCCC---Cceeeeccc
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLTHGELDNG---RGHARQKLF 239 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~~G~l~~~---~G~i~~~~~ 239 (320)
++++|+|+||||||||+++|. |+++|. .|.|.++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~-~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMM-PILRERGLRVAVVKRHAH 41 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHH-HHHHHTTCCEEEEEC---
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHhhhcCCceEEEEEcCc
Confidence 468999999999999999999 999988 899988743
No 147
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.22 E-value=2.9e-07 Score=92.03 Aligned_cols=34 Identities=32% Similarity=0.517 Sum_probs=25.7
Q ss_pred EEEEcCCCChHHHHHHHHhcCcCCC-CCceeeeccc
Q psy15138 205 VAVVGNVDAGKSTLLGVLTHGELDN-GRGHARQKLF 239 (320)
Q Consensus 205 v~ivGpnGsGKSTLl~~l~~G~l~~-~~G~i~~~~~ 239 (320)
++|+||||||||||+++|+ |++.| ++|.+.+.+.
T Consensus 48 iaIvG~nGsGKSTLL~~I~-Gl~~P~~sG~vt~~g~ 82 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALS-GVALPRGSGIVTRCPL 82 (608)
T ss_dssp EECCCCTTSCHHHHHHHHH-SCC-------CCCSCE
T ss_pred EEEECCCCChHHHHHHHHh-CCCCCCCCCeEEEcCE
Confidence 8999999999999999999 99988 7999987643
No 148
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.22 E-value=8.9e-07 Score=81.03 Aligned_cols=112 Identities=19% Similarity=0.178 Sum_probs=79.0
Q ss_pred CCceEEEeCCCcchh----------h--ccCCCCccchhhhccceecCCCCchhHHHH-HHHHHHcCCCcEEEEeCCCCC
Q psy15138 13 ENAASVFETRIHERD----------D--DLPEASPADHSMLQSKVGANAGIVGMTKEH-LGLALALSVPVFVVVTKIDMC 79 (320)
Q Consensus 13 ~~~~~~~d~pgh~~~----------~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~-l~l~~~l~i~~~v~lnk~Dl~ 79 (320)
...+.|+|+|||.++ . .......+|.+++ |++++++......+. +..++..++|.++|+||+|+.
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~--VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILF--MIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEE--EEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEE--EEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence 345788999999543 2 2223456788877 999999988888877 777777889999999999998
Q ss_pred -ChhHHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHHcC
Q psy15138 80 -PPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNG 131 (320)
Q Consensus 80 -~~~~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~~~ 131 (320)
+...++..++++...+.. + .+ -+-.+..+.++.+++...+...+.++
T Consensus 136 ~~~~~~~~~~~~l~~~~~~--~--~~-i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 136 GPAKNVLPLIDEIHKKHPE--L--TE-IVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp SSGGGGHHHHHHHHHHCTT--C--CC-EEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred CCHHHHHHHHHHHHHhccC--C--Ce-EEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 777777777777765321 0 11 11134466677888888877766544
No 149
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.22 E-value=1.1e-06 Score=91.28 Aligned_cols=136 Identities=18% Similarity=0.121 Sum_probs=79.2
Q ss_pred chhHHHHHHHHHHcCC-C--cEEEE----eCCCCCChhHHHHHHHHHHHh---hc--C------CCcccc---------C
Q psy15138 52 VGMTKEHLGLALALSV-P--VFVVV----TKIDMCPPNVLQDTLKLLVRI---LK--S------PGCRKV---------P 104 (320)
Q Consensus 52 ~~~t~~~l~l~~~l~i-~--~~v~l----nk~Dl~~~~~le~~l~~~~~~---l~--~------~~~~~i---------~ 104 (320)
.+..+.+++||++|.. | .++++ +.+|-.+.+||.+.+.++++. +. + ..|+++ .
T Consensus 523 SGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~ 602 (993)
T 2ygr_A 523 SGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEH 602 (993)
T ss_dssp CHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGG
T ss_pred CHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccC
Confidence 3577789999999998 4 56777 999998899999998888742 11 0 112322 1
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHcCcccceecccccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceeeeeeeecCCC
Q psy15138 105 VMNCLISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNG 184 (320)
Q Consensus 105 ~kl~~~~gnyd~~~~l~~q~~~~~~~~~~~~~~~ig~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 184 (320)
.....+.|+++.+.+....+..+...+... +....... .......+++++...
T Consensus 603 gG~iv~~G~~~e~~~~~~~lt~~~l~g~~~----~~~~~~~~----------------------~~~~~~~L~v~~l~~- 655 (993)
T 2ygr_A 603 GGRIVHSGPYDELLRNKDSITGAYLSGRES----IEIPAIRR----------------------SVDPRRQLTVVGARE- 655 (993)
T ss_dssp CCSCCEEECHHHHHHCTTCHHHHHHHTSSC----CCCCSSCC----------------------CCCSSSEEEEEEECS-
T ss_pred CCEEEEeeCHHHhhhhhHHHHHHHhccCcc----ccCccccc----------------------cCCCCceEEEecCcc-
Confidence 223456778877754321111111111100 00000000 000012455554432
Q ss_pred eeeeecceeccccCCcc---CcEEEEEcCCCChHHHHHHHH
Q psy15138 185 LTGQYLLRKRVESQDFL---EIRVAVVGNVDAGKSTLLGVL 222 (320)
Q Consensus 185 ~~~~~~~~~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l 222 (320)
..++++++. |++++|+|+||||||||+++|
T Consensus 656 --------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 656 --------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp --------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTT
T ss_pred --------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHH
Confidence 246666665 999999999999999999985
No 150
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.21 E-value=3.8e-06 Score=70.44 Aligned_cols=108 Identities=15% Similarity=0.075 Sum_probs=72.6
Q ss_pred CceEEEeCCC----------cchhh-----ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCC
Q psy15138 14 NAASVFETRI----------HERDD-----DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDM 78 (320)
Q Consensus 14 ~~~~~~d~pg----------h~~~~-----~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl 78 (320)
+.+.++|+|| +++|. .+.++..+|.+++ |++++.+......+.+..+...++|.++|+||+|+
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl 146 (195)
T 1svi_A 69 DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQ--IVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADK 146 (195)
T ss_dssp TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEE--EEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEE--EEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 4688999999 66665 2344456677777 99999887776665566666778899999999999
Q ss_pred CChhHHHHHHHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHH
Q psy15138 79 CPPNVLQDTLKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSL 127 (320)
Q Consensus 79 ~~~~~le~~l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~ 127 (320)
.+...++...+++.+.+.... . ..+. ....+.+.++++...+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~Sa~~~~gv~~l~~~l~~~ 192 (195)
T 1svi_A 147 IPKGKWDKHAKVVRQTLNIDP--E--DELILFSSETKKGKDEAWGAIKKM 192 (195)
T ss_dssp SCGGGHHHHHHHHHHHHTCCT--T--SEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHcccC--C--CceEEEEccCCCCHHHHHHHHHHH
Confidence 887766666666666443210 1 1112 2335556677776666544
No 151
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.20 E-value=3.6e-07 Score=76.97 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=22.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGELD 228 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~l~ 228 (320)
+++|+||||||||||+++|+ |++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~-g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIV-ERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHG
T ss_pred EEEEECCCCCCHHHHHHHHH-HHhC
Confidence 58999999999999999999 9985
No 152
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.19 E-value=5.8e-07 Score=85.74 Aligned_cols=37 Identities=24% Similarity=0.130 Sum_probs=33.9
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL 238 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~ 238 (320)
.|..++|+|||||||||||++|. |.++|.+|.|....
T Consensus 166 ~ggii~I~GpnGSGKTTlL~all-g~l~~~~g~I~~~e 202 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGL-QELNSSERNILTVE 202 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHH-HHHCCTTSCEEEEE
T ss_pred cCCeEEEECCCCCCHHHHHHHHH-hhcCCCCCEEEEec
Confidence 48899999999999999999999 99999999988753
No 153
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.17 E-value=8.5e-07 Score=86.75 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=34.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL 238 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~ 238 (320)
|+.++|+||||||||||+++|+ |+++|++|.+.+..
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~-~~i~~~~giitied 295 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIM-MFIPPDAKVVSIED 295 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHG-GGSCTTCCEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHH-hhCCCCCCEEEEcC
Confidence 8889999999999999999999 99999999998864
No 154
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.17 E-value=3.1e-06 Score=69.11 Aligned_cols=111 Identities=10% Similarity=-0.102 Sum_probs=64.1
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc--hhHHHHHHHHHH---cCCCcEEEEeCCCCCChhHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV--GMTKEHLGLALA---LSVPVFVVVTKIDMCPPNVLQD 86 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~---l~i~~~v~lnk~Dl~~~~~le~ 86 (320)
..+.++|+|||++|. .-.-...+|.+++ |++++++.. ........+.+. .++|+++++||+|+.+....++
T Consensus 51 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 128 (171)
T 1upt_A 51 LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY--VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSE 128 (171)
T ss_dssp EEEEEEEECCCGGGGGGGGGGCTTCSEEEE--EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH
T ss_pred EEEEEEECCCChhhhHHHHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHH
Confidence 357889999999998 2233557788877 999987642 222222233332 4678899999999976533333
Q ss_pred HHHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHHHHc
Q psy15138 87 TLKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSLIDN 130 (320)
Q Consensus 87 ~l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~~~~ 130 (320)
+...+.... +........ ....+.+..+++...+.+.+.+
T Consensus 129 ~~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 129 MANSLGLPA----LKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp HHHHHTGGG----CTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHhCchh----ccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 333332111 111111222 2335556677777776665543
No 155
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.16 E-value=7.3e-07 Score=75.88 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCc
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRG 232 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G 232 (320)
|+.++|+|||||||||++++|+ +.+.|+.|
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~-~~~~~~~~ 35 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIF-EDPSTSYK 35 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHH-HCTTCCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHH-HhhCCCeE
Confidence 7889999999999999999999 88866555
No 156
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.14 E-value=2.7e-06 Score=88.30 Aligned_cols=42 Identities=21% Similarity=0.186 Sum_probs=34.2
Q ss_pred chhHHHHHHHHHHcCC-Cc--EEEE----eCCCCCChhHHHHHHHHHHH
Q psy15138 52 VGMTKEHLGLALALSV-PV--FVVV----TKIDMCPPNVLQDTLKLLVR 93 (320)
Q Consensus 52 ~~~t~~~l~l~~~l~i-~~--~v~l----nk~Dl~~~~~le~~l~~~~~ 93 (320)
.+..+.++.||++|.. |. ++++ +.+|-.+..++.+.+.++.+
T Consensus 466 SGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~ 514 (916)
T 3pih_A 466 SGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD 514 (916)
T ss_dssp CHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh
Confidence 3577789999999987 43 7777 99999999999888877754
No 157
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.13 E-value=7.2e-07 Score=78.11 Aligned_cols=43 Identities=19% Similarity=0.164 Sum_probs=32.0
Q ss_pred cccCCccCcEEEEEcCCCChHHHHHHHHhcCc-C-CCCCceeeecc
Q psy15138 195 VESQDFLEIRVAVVGNVDAGKSTLLGVLTHGE-L-DNGRGHARQKL 238 (320)
Q Consensus 195 l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~-l-~~~~G~i~~~~ 238 (320)
+......|+.++|+||||||||||+++|+ +. + +++.|.+.+..
T Consensus 23 l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~-~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 23 IEGGFPEGTTVLLTGGTGTGKTTFAAQFI-YKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TTTSEETTCEEEEECCTTSSHHHHHHHHH-HHHHHHHCCCEEEEES
T ss_pred hcCCCCCCcEEEEEeCCCCCHHHHHHHHH-HHHHHhCCCeEEEEEc
Confidence 33344459999999999999999999988 53 2 56666666543
No 158
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.11 E-value=5.5e-07 Score=84.68 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=32.6
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCC-Cceeeec
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNG-RGHARQK 237 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~-~G~i~~~ 237 (320)
.|+.++|+||||||||||+++|+ |+++|. +|.|...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~-~~~~~~~~g~I~~~ 171 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMI-DYINQTKSYHIITI 171 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHH-HHHHHHSCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHH-hhcCcCCCcEEEEe
Confidence 38999999999999999999999 999987 8998654
No 159
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.11 E-value=6.1e-07 Score=85.55 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=28.0
Q ss_pred cccCCcc---CcE--EEEEcCCCChHHHHHHHHhcCcC
Q psy15138 195 VESQDFL---EIR--VAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 195 l~~~~~~---g~~--v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
++++++. |++ ++|+||||||||||+++|+ |..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~-G~~ 66 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLF-NTK 66 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHH-TSC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHh-Ccc
Confidence 5665554 999 9999999999999999999 984
No 160
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.08 E-value=9.5e-06 Score=73.89 Aligned_cols=106 Identities=13% Similarity=0.071 Sum_probs=70.6
Q ss_pred ceEEEeCCCcc---------hhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC-hh
Q psy15138 15 AASVFETRIHE---------RDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP-PN 82 (320)
Q Consensus 15 ~~~~~d~pgh~---------~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~-~~ 82 (320)
.+.|+|+|||. +|. .......+|.+++ |++++. +.++++.-+..++..+.|.++++||+|+.. ..
T Consensus 57 ~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~--Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~ 133 (301)
T 1ega_A 57 QAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIF--VVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKA 133 (301)
T ss_dssp EEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEE--EEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHH
T ss_pred eEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEE--EEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHH
Confidence 47889999998 344 2445667888877 999988 888887655555556789999999999987 55
Q ss_pred HHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHH
Q psy15138 83 VLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLID 129 (320)
Q Consensus 83 ~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~ 129 (320)
.+.+.++++.+.+ ++. ..+-.+..+.+.++++...+...+.
T Consensus 134 ~~~~~l~~l~~~~---~~~---~~i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 134 DLLPHLQFLASQM---NFL---DIVPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp HHHHHHHHHHTTS---CCS---EEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhc---CcC---ceEEEECCCCCCHHHHHHHHHHhCC
Confidence 6656656554421 111 1122334556677777777665443
No 161
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.07 E-value=1.5e-06 Score=74.12 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=27.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL 238 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~ 238 (320)
|+.++|+||||||||||+++|+ +.+ |.+.++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~-~~~----g~~~i~~ 60 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVA-DET----GLEFAEA 60 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH-HHH----CCEEEEG
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh----CCeEEcc
Confidence 7889999999999999999999 776 6666653
No 162
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.06 E-value=1.3e-06 Score=90.41 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=35.3
Q ss_pred chhHHHHHHHHHHcCC-C--cEEEE----eCCCCCChhHHHHHHHHHHH
Q psy15138 52 VGMTKEHLGLALALSV-P--VFVVV----TKIDMCPPNVLQDTLKLLVR 93 (320)
Q Consensus 52 ~~~t~~~l~l~~~l~i-~--~~v~l----nk~Dl~~~~~le~~l~~~~~ 93 (320)
.+..+.+++||++|.. | .++++ +.+|-.+.+||.+.+.++++
T Consensus 506 SGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~ 554 (972)
T 2r6f_A 506 SGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD 554 (972)
T ss_dssp CHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHh
Confidence 3577789999999998 4 57777 99999999999999888864
No 163
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.05 E-value=1e-06 Score=75.20 Aligned_cols=35 Identities=29% Similarity=0.221 Sum_probs=30.1
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCcee--eec
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHA--RQK 237 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i--~~~ 237 (320)
.|+.++|+|||||||||+++.|+ +.+. ..|.+ .++
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La-~~l~-~~G~~~~~~d 60 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALN-QMLY-QKGKLCYILD 60 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH-HHHH-HTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHH-HHHH-hcCceEEEec
Confidence 37889999999999999999999 8887 56776 554
No 164
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.04 E-value=9.8e-06 Score=67.99 Aligned_cols=72 Identities=15% Similarity=0.138 Sum_probs=48.0
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc-----------CCCcEEEEeCCCCC
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL-----------SVPVFVVVTKIDMC 79 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l-----------~i~~~v~lnk~Dl~ 79 (320)
..+.++|+||+++|. .-.-...+|.+++ |++++++.. ....+.+.-.... ++|+++|+||+|+.
T Consensus 63 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~--v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 140 (199)
T 4bas_A 63 VAFTVFDMGGAKKFRGLWETYYDNIDAVIF--VVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAA 140 (199)
T ss_dssp EEEEEEEECCSGGGGGGGGGGCTTCSEEEE--EEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTST
T ss_pred EEEEEEECCCCHhHHHHHHHHHhcCCEEEE--EEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCC
Confidence 347889999999999 2233567888877 999997542 2222333222222 77999999999998
Q ss_pred ChhHHHHH
Q psy15138 80 PPNVLQDT 87 (320)
Q Consensus 80 ~~~~le~~ 87 (320)
.....+++
T Consensus 141 ~~~~~~~~ 148 (199)
T 4bas_A 141 GAKTAAEL 148 (199)
T ss_dssp TCCCHHHH
T ss_pred CCCCHHHH
Confidence 66333333
No 165
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.03 E-value=2.2e-06 Score=73.34 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=25.1
Q ss_pred ccCcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138 200 FLEIRVAVVGNVDAGKSTLLGVLTHGELD 228 (320)
Q Consensus 200 ~~g~~v~ivGpnGsGKSTLl~~l~~G~l~ 228 (320)
+.|+.++|+||||||||||++.|. +.++
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~-~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALL-SQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHH-HHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHH-hhCC
Confidence 458889999999999999999999 7765
No 166
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.03 E-value=1.4e-06 Score=81.43 Aligned_cols=33 Identities=33% Similarity=0.321 Sum_probs=29.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCC-Cceee
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNG-RGHAR 235 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~-~G~i~ 235 (320)
|..++|+||||||||||+++|+ |.++|. .|.+.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~-g~~~~~~~~~i~ 156 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAML-DYLNNTKYHHIL 156 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHH-HHHHHHCCCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHH-hcccCCCCcEEE
Confidence 7799999999999999999999 999887 45554
No 167
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.02 E-value=1.8e-06 Score=79.38 Aligned_cols=34 Identities=29% Similarity=0.330 Sum_probs=30.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcC--------CCCCceeeecc
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGEL--------DNGRGHARQKL 238 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~l--------~~~~G~i~~~~ 238 (320)
.++|+|+||||||||++.|. |.. .|+.|++.+++
T Consensus 6 v~~i~G~~GaGKTTll~~l~-~~~~~~~~aVi~~d~G~i~idg 47 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHIL-NEQHGYKIAVIENEFGEVSVDD 47 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHH-HSCCCCCEEEECSSCCSCCEEE
T ss_pred EEEEEecCCCCHHHHHHHHH-hhcCCCcEEEEEecCcccCccH
Confidence 48999999999999999999 887 78899998864
No 168
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.01 E-value=1.2e-06 Score=79.34 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=31.3
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCc-eeee
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRG-HARQ 236 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G-~i~~ 236 (320)
.|+.++|+||||||||||++.|+ |.+.|.+| .+.+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia-~~~~~~~G~~v~~ 69 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQA-LQWGTAMGKKVGL 69 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHH-HHHHHTSCCCEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHH-HHHHHHcCCeEEE
Confidence 49999999999999999999999 99988877 5644
No 169
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.01 E-value=5.8e-06 Score=69.23 Aligned_cols=108 Identities=14% Similarity=0.105 Sum_probs=61.5
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHH-HHHHH-----cCCCcEEEEeCCCCCChhHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLALA-----LSVPVFVVVTKIDMCPPNVL 84 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~~-----l~i~~~v~lnk~Dl~~~~~l 84 (320)
..+.++|+||+++|. .-.....+|.+++ |++++++.. ...++.+ .+.+. .++|+++|+||+|+......
T Consensus 67 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 144 (190)
T 2h57_A 67 LSFTVFDMSGQGRYRNLWEHYYKEGQAIIF--VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTS 144 (190)
T ss_dssp CEEEEEEECCSTTTGGGGGGGGGGCSEEEE--EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCH
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEE--EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCH
Confidence 457899999999998 2333566788877 999987421 2222233 33333 36789999999999765433
Q ss_pred HHHHHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHH
Q psy15138 85 QDTLKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSL 127 (320)
Q Consensus 85 e~~l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~ 127 (320)
++..+.+. ...+......+. ....+.+..+++...+.+.
T Consensus 145 ~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 184 (190)
T 2h57_A 145 VKVSQLLC----LENIKDKPWHICASDAIKGEGLQEGVDWLQDQ 184 (190)
T ss_dssp HHHHHHHT----GGGCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHhC----hhhccCCceEEEEccCCCCcCHHHHHHHHHHH
Confidence 33322221 000111111122 2345556677776666554
No 170
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.01 E-value=4.6e-06 Score=78.25 Aligned_cols=21 Identities=43% Similarity=0.596 Sum_probs=19.6
Q ss_pred EEEEcCCCChHHHHHHHHhcCc
Q psy15138 205 VAVVGNVDAGKSTLLGVLTHGE 226 (320)
Q Consensus 205 v~ivGpnGsGKSTLl~~l~~G~ 226 (320)
++++|++|+|||||++.|. |.
T Consensus 163 i~~vG~~nvGKStliN~L~-~~ 183 (368)
T 3h2y_A 163 VYVVGCTNVGKSTFINRMI-KE 183 (368)
T ss_dssp EEEEEBTTSSHHHHHHHHH-HH
T ss_pred EEEecCCCCChhHHHHHHH-hh
Confidence 7999999999999999998 65
No 171
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.00 E-value=7.5e-06 Score=68.36 Aligned_cols=110 Identities=12% Similarity=-0.051 Sum_probs=62.5
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHH-HHHHH---cCCCcEEEEeCCCCCChhHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLALA---LSVPVFVVVTKIDMCPPNVLQD 86 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~~---l~i~~~v~lnk~Dl~~~~~le~ 86 (320)
..+.++|+|||++|. .-.....+|.+++ |++++++.. ....+.+ .+.+. .++|+++|+||+|+.+....++
T Consensus 66 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 143 (189)
T 2x77_A 66 ISFEVWDLGGQTGVRPYWRCYFSDTDAVIY--VVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAE 143 (189)
T ss_dssp EEEEEEEECCSSSSCCCCSSSSTTCCEEEE--EEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHH
T ss_pred EEEEEEECCCCHhHHHHHHHHhhcCCEEEE--EEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHH
Confidence 357889999999998 2333567788877 999987542 2222223 23222 3568889999999976533333
Q ss_pred HHHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHHHH
Q psy15138 87 TLKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSLID 129 (320)
Q Consensus 87 ~l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~~~ 129 (320)
+.+.+... .+........ ....+.+..+++...+.+.+.
T Consensus 144 ~~~~~~~~----~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 144 IAEQLGVS----SIMNRTWTIVKSSSKTGDGLVEGMDWLVERLR 183 (189)
T ss_dssp HHHHTTGG----GCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHhChh----hccCCceEEEEccCCCccCHHHHHHHHHHHHH
Confidence 32222111 1111111222 233555667777766665543
No 172
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.00 E-value=2.5e-06 Score=73.30 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=25.5
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCC
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDN 229 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~ 229 (320)
.|+.++|+||||||||||++.|+ +.+++
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~-~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVF-KDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHH-HSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHH-hhCCC
Confidence 37889999999999999999999 88875
No 173
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.00 E-value=5.2e-06 Score=75.72 Aligned_cols=104 Identities=14% Similarity=0.070 Sum_probs=68.2
Q ss_pred ceEEEeCCCcch--------hh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHc--CCCcEEEEeCCCCCChh
Q psy15138 15 AASVFETRIHER--------DD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALAL--SVPVFVVVTKIDMCPPN 82 (320)
Q Consensus 15 ~~~~~d~pgh~~--------~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l--~i~~~v~lnk~Dl~~~~ 82 (320)
.+.|+|+||+.+ |. .......+|.+++ |++++.+.....+.-+..++.. ++|.++++||+|+.+..
T Consensus 56 ~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~--VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~ 133 (301)
T 1wf3_A 56 QIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVW--VVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYP 133 (301)
T ss_dssp EEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEE--EEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSH
T ss_pred EEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEE--EEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCch
Confidence 477899999987 44 2223456788877 9999998877766555566666 78999999999998654
Q ss_pred H-HHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHH
Q psy15138 83 V-LQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLID 129 (320)
Q Consensus 83 ~-le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~ 129 (320)
. +.+.++++ +...+ .+-.+..+.++++++...+...+.
T Consensus 134 ~~~~~~~~~~--------~~~~~-~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 134 EEAMKAYHEL--------LPEAE-PRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp HHHHHHHHHT--------STTSE-EEECCTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHh--------cCcCc-EEEEeCCCCCCHHHHHHHHHHhcc
Confidence 4 43333332 11111 111334667788888777765543
No 174
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.00 E-value=1.3e-06 Score=77.42 Aligned_cols=41 Identities=22% Similarity=0.106 Sum_probs=31.8
Q ss_pred cccCCccCcEEEEEcCCCChHHHHHHHHhc--CcCCCCCceee
Q psy15138 195 VESQDFLEIRVAVVGNVDAGKSTLLGVLTH--GELDNGRGHAR 235 (320)
Q Consensus 195 l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~--G~l~~~~G~i~ 235 (320)
++.....|++++|+|||||||||++++|+. |+..+++|.+.
T Consensus 20 ~~~m~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 20 RPHMTAIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp ---CTTTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred hhhcCCCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 333344588999999999999999999974 66677888876
No 175
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.99 E-value=2.9e-06 Score=80.83 Aligned_cols=49 Identities=24% Similarity=0.209 Sum_probs=33.7
Q ss_pred eeeeecCCCeeeeecceeccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCc
Q psy15138 176 LRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRG 232 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G 232 (320)
+.+.++.+.| +...++++++|. ++|+||||||||||+++|+ |...+..|
T Consensus 12 l~~~~l~~~y----~~~~vl~~vsf~---I~lvG~sGaGKSTLln~L~-g~~~~~~~ 60 (418)
T 2qag_C 12 VGFANLPNQV----YRKSVKRGFEFT---LMVVGESGLGKSTLINSLF-LTDLYSPE 60 (418)
T ss_dssp ---CCCCCCT----TTTTCC-CCCEE---EEEECCTTSSHHHHHHHHT-TCCCCCCC
T ss_pred EEEEecceeE----CCEEEecCCCEE---EEEECCCCCcHHHHHHHHh-CCCCCCCC
Confidence 4555555444 334567777763 7999999999999999999 98875444
No 176
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.99 E-value=1.6e-06 Score=76.38 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHhc--CcCCCCCceeeec
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTH--GELDNGRGHARQK 237 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~--G~l~~~~G~i~~~ 237 (320)
+++++|+||||||||||+++|+. |+..|+.|.+.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~ 64 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRE 64 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH
Confidence 57899999999999999999974 6777888887654
No 177
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.98 E-value=1.7e-06 Score=73.88 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK 237 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~ 237 (320)
+.+++|+|+||||||||++.|. +.+++..|.+...
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~-~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLS-QTLREQGISVCVF 56 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHH-HHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHH-HHHhhcCCeEEEe
Confidence 6779999999999999999999 9888777877553
No 178
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.98 E-value=5.7e-06 Score=69.10 Aligned_cols=65 Identities=11% Similarity=0.037 Sum_probs=45.7
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHH---------cCCCcEEEEeCCCCCCh
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALA---------LSVPVFVVVTKIDMCPP 81 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~---------l~i~~~v~lnk~Dl~~~ 81 (320)
.+.++|+|||++|. .-.....+|.+++ |++++++.....++.+.-+.. .++|.++|.||+|+...
T Consensus 75 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~ 150 (198)
T 3t1o_A 75 RFHLYTVPGQVFYNASRKLILRGVDGIVF--VADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA 150 (198)
T ss_dssp EEEEEECCSCCSCSHHHHHHTTTCCEEEE--EEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC
T ss_pred EEEEEeCCChHHHHHHHHHHHhcCCEEEE--EEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc
Confidence 37888999999998 2223456788877 999997665555544422211 46688999999999754
No 179
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.98 E-value=2.7e-06 Score=79.23 Aligned_cols=43 Identities=16% Similarity=0.121 Sum_probs=34.0
Q ss_pred cccCCccCcEEEEEcCCCChHHHHHHHHhcCcC--CCCC----ce-eeecc
Q psy15138 195 VESQDFLEIRVAVVGNVDAGKSTLLGVLTHGEL--DNGR----GH-ARQKL 238 (320)
Q Consensus 195 l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l--~~~~----G~-i~~~~ 238 (320)
+......|+.++|+||||||||||++.|+ +.. +|+. |. ++++.
T Consensus 124 L~ggi~~G~i~~I~G~~GsGKTTL~~~l~-~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 124 LGGGIETQAITEVFGEFGSGKTQLAHTLA-VMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp HTSSEESSEEEEEEESTTSSHHHHHHHHH-HHTTSCGGGTSCSCEEEEEES
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHH-HHhccchhcCCCCCeEEEEeC
Confidence 44444459999999999999999999999 887 5655 56 66654
No 180
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.95 E-value=3.4e-06 Score=73.63 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=28.3
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL 238 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~ 238 (320)
.|+.++|.|+||||||||+++|+ +. .|.+.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~-~~----~g~v~~~~ 51 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFE-KY----KNDICLLT 51 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTG-GG----TTTEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHH-hc----cCCeEEEe
Confidence 48889999999999999999999 87 57676653
No 181
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.94 E-value=9.1e-06 Score=67.58 Aligned_cols=111 Identities=10% Similarity=-0.060 Sum_probs=64.0
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHH-HHHHH---cCCCcEEEEeCCCCCChhHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLALA---LSVPVFVVVTKIDMCPPNVLQD 86 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~~---l~i~~~v~lnk~Dl~~~~~le~ 86 (320)
..+.++|+|||++|. .-.-...+|.+++ |++++++.. ...++.+ .+.+. .++|.++|+||+|+.+....++
T Consensus 62 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 139 (186)
T 1ksh_A 62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIW--VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNA 139 (186)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCTTCSEEEE--EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEE--EEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHH
Confidence 457889999999998 3333567788877 999987542 2222233 33332 4568899999999976543333
Q ss_pred HHHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHHHHc
Q psy15138 87 TLKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSLIDN 130 (320)
Q Consensus 87 ~l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~~~~ 130 (320)
..+.+.. ..+........ ....+.+..+++...+.+.+.+
T Consensus 140 ~~~~~~~----~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 140 IQEALEL----DSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp HHHHTTG----GGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHhCh----hhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 3222211 00111111222 2335566777777777666543
No 182
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.94 E-value=3.6e-06 Score=70.27 Aligned_cols=30 Identities=27% Similarity=0.223 Sum_probs=26.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCCCCCcee
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGELDNGRGHA 234 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i 234 (320)
.++|+||||||||||+++|. +++.+..|..
T Consensus 28 ~~~i~G~NGsGKStll~ai~-~~l~~~~~~~ 57 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAIL-FVLGGLSAKA 57 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHH-HHTTCCCTGG
T ss_pred cEEEECCCCCCHHHHHHHHH-HHHcCCcccc
Confidence 78999999999999999999 8887766643
No 183
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.93 E-value=1.6e-06 Score=82.16 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELD 228 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~ 228 (320)
| +++|+||||||||||+++|. +++.
T Consensus 61 G-~~~lvG~NGaGKStLl~aI~-~l~~ 85 (415)
T 4aby_A 61 G-FCAFTGETGAGKSIIVDALG-LLLG 85 (415)
T ss_dssp S-EEEEEESHHHHHHHHTHHHH-HHTT
T ss_pred C-cEEEECCCCCCHHHHHHHHH-HHhC
Confidence 7 99999999999999999997 6654
No 184
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.91 E-value=1.9e-06 Score=87.98 Aligned_cols=42 Identities=21% Similarity=0.029 Sum_probs=34.7
Q ss_pred eccccCCccCcEEEEEcCCCChHHHHHHHHhcCcCC-CCCceee
Q psy15138 193 KRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELD-NGRGHAR 235 (320)
Q Consensus 193 ~~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~-~~~G~i~ 235 (320)
.+++++++.|++++|+||||||||||||+|+ |+.. +..|.+.
T Consensus 567 ~vl~disl~g~i~~I~GpNGsGKSTlLr~ia-gl~~~~~~G~~v 609 (765)
T 1ewq_A 567 FVPNDLEMAHELVLITGPNMAGKSTFLRQTA-LIALLAQVGSFV 609 (765)
T ss_dssp CCCEEEEESSCEEEEESCSSSSHHHHHHHHH-HHHHHHTTTCCB
T ss_pred eEeeeccCCCcEEEEECCCCCChHHHHHHHH-hhhhhcccCcee
Confidence 4566666779999999999999999999999 9864 6777653
No 185
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.90 E-value=3.7e-06 Score=69.48 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELD 228 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~ 228 (320)
+..++|+|||||||||++++|+ +.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La-~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLA-QQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH-HHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHH-HHhC
Confidence 4569999999999999999999 7764
No 186
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.88 E-value=5.1e-06 Score=70.02 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=22.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCCC
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGELDN 229 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~l~~ 229 (320)
+++|+|+||||||||++.++ |...+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~-~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFT-RNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHH-HSCCC
T ss_pred EEEEECcCCCCHHHHHHHHh-cCCCC
Confidence 58999999999999999999 77654
No 187
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.88 E-value=8.7e-06 Score=67.95 Aligned_cols=109 Identities=10% Similarity=0.004 Sum_probs=58.7
Q ss_pred CceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCc-hhHHHHH-HHHHH---cCCCcEEEEeCCCCCChhHHHH
Q psy15138 14 NAASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLALA---LSVPVFVVVTKIDMCPPNVLQD 86 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~~---l~i~~~v~lnk~Dl~~~~~le~ 86 (320)
..+.++|+||+++|.. -.-...+|.+++ |++++++.. ....+.+ .+.+. .++|+++|+||+|+......++
T Consensus 60 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~ 137 (187)
T 1zj6_A 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIV--VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAE 137 (187)
T ss_dssp EEEEEEECCC----CGGGHHHHTTCCEEEE--EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHH
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEE--EEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHH
Confidence 3578899999999982 222456788877 999987642 2223333 33332 4668899999999976433333
Q ss_pred HHHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHHH
Q psy15138 87 TLKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSLI 128 (320)
Q Consensus 87 ~l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~~ 128 (320)
..+.+... .+........ ....+.+..+++...+.+..
T Consensus 138 i~~~~~~~----~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 138 ISQFLKLT----SIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176 (187)
T ss_dssp HHHHHTGG----GCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHhChh----hhcCCCcEEEEccCCCCcCHHHHHHHHHHHH
Confidence 32222211 0111111222 33456667777777766554
No 188
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.87 E-value=4.1e-06 Score=68.32 Aligned_cols=35 Identities=29% Similarity=0.215 Sum_probs=29.3
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCc--eeeec
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRG--HARQK 237 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G--~i~~~ 237 (320)
.|+.++|+||||+|||||+++|+ +.+.+ +| .+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~-~~~~~-~g~~~~~~~ 71 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWV-AQALE-AGKNAAYID 71 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHH-HHHHT-TTCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHH-HHHHh-cCCcEEEEc
Confidence 68889999999999999999999 88876 46 44443
No 189
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.86 E-value=3.2e-06 Score=72.85 Aligned_cols=36 Identities=11% Similarity=0.013 Sum_probs=31.4
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK 237 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~ 237 (320)
.|+.++|+||||||||||++.|+ +...+..|.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~-~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFI-AKGLRDGDPCIYV 57 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-HHHHHHTCCEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH-HHHHHCCCeEEEE
Confidence 48999999999999999999999 8877777777654
No 190
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.86 E-value=6e-06 Score=75.96 Aligned_cols=30 Identities=30% Similarity=0.383 Sum_probs=26.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCC--CCCcee
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGELD--NGRGHA 234 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~l~--~~~G~i 234 (320)
+++|+||||||||||+++|. +++. |+.|.+
T Consensus 94 iigI~GpsGSGKSTl~~~L~-~ll~~~~~~~~v 125 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLK-ALLSRWPDHPNV 125 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHTTSTTCCCE
T ss_pred EEEEECCCCCCHHHHHHHHH-HHhcccCCCCeE
Confidence 58999999999999999999 9887 456654
No 191
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.85 E-value=6.4e-06 Score=68.27 Aligned_cols=32 Identities=19% Similarity=0.139 Sum_probs=26.5
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK 237 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~ 237 (320)
.|+.++|+|||||||||+++.|+ +.+ |.+.++
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~-~~~----g~~~i~ 38 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVA-HQL----HAAFLD 38 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHH-HHH----TCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH-Hhh----CcEEEe
Confidence 47889999999999999999999 764 555554
No 192
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.81 E-value=1.3e-05 Score=64.91 Aligned_cols=108 Identities=9% Similarity=-0.041 Sum_probs=59.9
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHH-HHHHH---cCCCcEEEEeCCCCCChhHHHH
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLALA---LSVPVFVVVTKIDMCPPNVLQD 86 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~~---l~i~~~v~lnk~Dl~~~~~le~ 86 (320)
..+.++|+|||++|. .-.-...+|.+++ |++++++.. ....+.+ .+... .++|++++.||+|+......++
T Consensus 44 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 121 (164)
T 1r8s_A 44 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF--VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 121 (164)
T ss_dssp CEEEEEECCCCGGGHHHHHHHTTTCSEEEE--EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH
T ss_pred EEEEEEEcCCChhhHHHHHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHH
Confidence 458899999999998 2223566788877 999987532 1122222 22222 2568889999999976533333
Q ss_pred HHHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHH
Q psy15138 87 TLKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSL 127 (320)
Q Consensus 87 ~l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~ 127 (320)
+.+++... .+........ ..+.+.+..+++...+...
T Consensus 122 ~~~~~~~~----~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 159 (164)
T 1r8s_A 122 ITDKLGLH----SLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159 (164)
T ss_dssp HHHHTTGG----GCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHhCcc----cccCccEEEEEcccCCCcCHHHHHHHHHHH
Confidence 32222111 1111111122 2335556677766666544
No 193
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.80 E-value=3.1e-06 Score=70.69 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCce
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGH 233 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~ 233 (320)
|+.++|+||||+|||||++.|+ +.+.|..|.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~-~~~~~~~g~ 68 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATL-KAIYEKKGI 68 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHH-HHHHHHSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHH-HHHHHHcCC
Confidence 6779999999999999999999 888766673
No 194
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.79 E-value=7.5e-06 Score=78.87 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=73.1
Q ss_pred ceEEEeCCC----------cchhh---ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC-
Q psy15138 15 AASVFETRI----------HERDD---DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP- 80 (320)
Q Consensus 15 ~~~~~d~pg----------h~~~~---~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~- 80 (320)
.+.++|+|| +|+|. .+.....+|.+++ |+++.++...+..+.+..+...+.|.++|+||+|+.+
T Consensus 244 ~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ll--viD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~ 321 (456)
T 4dcu_A 244 EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAV--VLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 321 (456)
T ss_dssp EEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEE--EEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC
T ss_pred eEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEE--EEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCC
Confidence 478899999 68887 3334567788888 9999999999999999999989999999999999974
Q ss_pred -hhHHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138 81 -PNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL 127 (320)
Q Consensus 81 -~~~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~ 127 (320)
....++..+.+...+... ...++ +..+..+..+++++...+.+.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~--~~~~~-~~~SA~~g~gv~~l~~~i~~~ 366 (456)
T 4dcu_A 322 DESTMKEFEENIRDHFQFL--DYAPI-LFMSALTKKRIHTLMPAIIKA 366 (456)
T ss_dssp CSSHHHHHHHHHHHHCGGG--TTSCE-EECCTTTCTTGGGHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcccC--CCCCE-EEEcCCCCcCHHHHHHHHHHH
Confidence 334555555665543321 11121 112334445555555554443
No 195
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.79 E-value=3.3e-05 Score=69.10 Aligned_cols=59 Identities=14% Similarity=0.220 Sum_probs=43.0
Q ss_pred cchhhhccce-ecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHHHHhhcC
Q psy15138 36 ADHSMLQSKV-GANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKS 97 (320)
Q Consensus 36 ~d~~~l~~vv-~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~~~~l~~ 97 (320)
+|.+++ ++ ++..+..+...+.+..+.. ++|.++|+||+|+.+...++..++++.+.+..
T Consensus 116 ~~~~l~--~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~ 175 (274)
T 3t5d_A 116 VQCCLY--FIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQE 175 (274)
T ss_dssp CCEEEE--EECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHH
T ss_pred eeEEEE--EecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHH
Confidence 445544 55 5556888877776655555 78999999999999888888777777776543
No 196
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.78 E-value=1e-05 Score=76.42 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcC------------cCCCCCceeeecc
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHG------------ELDNGRGHARQKL 238 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G------------~l~~~~G~i~~~~ 238 (320)
|.+++|+|+||+|||||+++|+ | ..+|..|.+.+..
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Lt-g~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAIT-KSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHH-HSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHH-CCCcccccCCCceeecceeeeeeeCC
Confidence 8889999999999999999999 8 5568888887653
No 197
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.78 E-value=4.6e-06 Score=79.91 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=60.9
Q ss_pred ceEEEeCCCc----------chhh---ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCCh
Q psy15138 15 AASVFETRIH----------ERDD---DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPP 81 (320)
Q Consensus 15 ~~~~~d~pgh----------~~~~---~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~ 81 (320)
.+.++|+||| |+|. .+.....+|.+++ |+++++|...+..+.+..+...+.|+++++||+|+.+.
T Consensus 224 ~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ll--v~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 224 EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAV--VLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 301 (436)
T ss_dssp EEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEE--EEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC
T ss_pred EEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEE--EEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCc
Confidence 4788999999 6665 3344567888888 99999999999988888888888999999999999754
Q ss_pred h--HHHHHHHHHHHhh
Q psy15138 82 N--VLQDTLKLLVRIL 95 (320)
Q Consensus 82 ~--~le~~l~~~~~~l 95 (320)
. ..++..+++...+
T Consensus 302 ~~~~~~~~~~~~~~~l 317 (436)
T 2hjg_A 302 DESTMKEFEENIRDHF 317 (436)
T ss_dssp CTTHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHhc
Confidence 2 2445555555543
No 198
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.77 E-value=1e-05 Score=77.23 Aligned_cols=105 Identities=18% Similarity=0.197 Sum_probs=70.1
Q ss_pred ceEEEeCCCcchhhcc---------CCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHH
Q psy15138 15 AASVFETRIHERDDDL---------PEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQ 85 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~~---------~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le 85 (320)
.+.++|+|||++|-.+ .....+|.+++ |+++ +...++++.+..++..++|.++|+||+|+.+....
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vll--VvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~- 158 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGIL--VTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE- 158 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEE--ECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEE--EEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-
Confidence 6889999999988621 12445788877 8988 78889999999999999999999999999765433
Q ss_pred HHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHHcC
Q psy15138 86 DTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNG 131 (320)
Q Consensus 86 ~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~~~ 131 (320)
+..+++.+ ...+ ++ +..+..+.+.++++...+.+.+.+.
T Consensus 159 ~~~~~l~~---~~g~---~v-~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 159 ELKGLYES---RYEA---KV-LLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp HHHHHSSC---CTTC---CC-CCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred HHHHHHHH---HcCC---CE-EEEECCCCCCHHHHHHHHHHhhhhh
Confidence 22222221 1111 11 1123355566777777776665443
No 199
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.77 E-value=3.5e-06 Score=72.85 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=27.6
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcC---CCCCceeee
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLTHGEL---DNGRGHARQ 236 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~~G~l---~~~~G~i~~ 236 (320)
.+++|+|||||||||++++|+ +.+ .++.|.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~-~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMA-EALQWHLLDSGAIYR 41 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHH-HHHTCEEEEHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHhCCCcccCcceee
Confidence 469999999999999999999 765 566777654
No 200
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.76 E-value=1.1e-05 Score=67.77 Aligned_cols=109 Identities=16% Similarity=0.090 Sum_probs=61.9
Q ss_pred eEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch--hHHHHHHHHHHc--CCCcEEEEeCCCCCCh---hHHHH
Q psy15138 16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG--MTKEHLGLALAL--SVPVFVVVTKIDMCPP---NVLQD 86 (320)
Q Consensus 16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~--~t~~~l~l~~~l--~i~~~v~lnk~Dl~~~---~~le~ 86 (320)
+.++|+||+++|. .-.-...+|.+++ |++++++..- .....+...+.. ++|.++|.||+|+... ....+
T Consensus 73 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 150 (194)
T 3reg_A 73 LHLWDTAGQEEYDRLRPLSYADSDVVLL--CFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQ 150 (194)
T ss_dssp EEEEEECCSGGGTTTGGGGCTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHH
T ss_pred EEEEECCCcHHHHHHhHhhccCCcEEEE--EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHH
Confidence 5788999999998 2333556788877 9999874321 113334444433 4688899999998642 11111
Q ss_pred HHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHHcCc
Q psy15138 87 TLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNGR 132 (320)
Q Consensus 87 ~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~~~~ 132 (320)
...++...+ .+.. -+-....+.+..+++...+.+.+.+..
T Consensus 151 ~~~~~~~~~---~~~~---~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 151 EGDDLCQKL---GCVA---YIEASSVAKIGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHH---TCSC---EEECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHhc---CCCE---EEEeecCCCCCHHHHHHHHHHHHHhcC
Confidence 222222221 1111 111334556667777777766655443
No 201
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.76 E-value=2.6e-05 Score=64.37 Aligned_cols=110 Identities=12% Similarity=0.008 Sum_probs=59.9
Q ss_pred ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCc--hhHHHHHHHHHH---cCCCcEEEEeCCCCCChhHH-HH
Q psy15138 15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIV--GMTKEHLGLALA---LSVPVFVVVTKIDMCPPNVL-QD 86 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~---l~i~~~v~lnk~Dl~~~~~l-e~ 86 (320)
.+.++|+||+++|.. -.-...+|.+++ |+++++... ......-.+... .++|+++|.||+|+...... .+
T Consensus 55 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 132 (181)
T 3t5g_A 55 HLQLVDTAGQDEYSIFPQTYSIDINGYIL--VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYE 132 (181)
T ss_dssp EEEEEECCCCCTTCCCCGGGTTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHH
T ss_pred EEEEEeCCCchhhhHHHHHHHhcCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHH
Confidence 357899999999982 223446777777 999886321 111111133333 35688999999998532211 11
Q ss_pred HHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHHcCcc
Q psy15138 87 TLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNGRG 133 (320)
Q Consensus 87 ~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~~~~~ 133 (320)
...++... ..+ ++ +-....+.+..+++...+.+.+.+..+
T Consensus 133 ~~~~~~~~---~~~---~~-~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 172 (181)
T 3t5g_A 133 EGKALAES---WNA---AF-LESSAKENQTAVDVFRRIILEAEKMDG 172 (181)
T ss_dssp HHHHHHHH---TTC---EE-EECCTTSHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHH---hCC---cE-EEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence 22222221 112 11 113446677788887777776655443
No 202
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.75 E-value=2.4e-05 Score=63.01 Aligned_cols=105 Identities=14% Similarity=0.047 Sum_probs=58.1
Q ss_pred eEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHH-HHc---CCCcEEEEeCCCCCChhHHHHHH
Q psy15138 16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLA-LAL---SVPVFVVVTKIDMCPPNVLQDTL 88 (320)
Q Consensus 16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~-~~l---~i~~~v~lnk~Dl~~~~~le~~l 88 (320)
+.++|+|||++|. .-.-...+|.+++ |+++++... ...++.+..+ ... ++|.++++||+|+.+.....+..
T Consensus 53 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~ 130 (166)
T 2ce2_X 53 LDILDTAGQEEYSAMRDQYMRTGEGFLC--VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQA 130 (166)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHCSEEEE--EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHH
T ss_pred EEEEECCCchhhhHHHHHhhccCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHH
Confidence 6788999999987 2222345677777 888876432 1223333222 222 67999999999987533222223
Q ss_pred HHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHH
Q psy15138 89 KLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLID 129 (320)
Q Consensus 89 ~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~ 129 (320)
.++...+ .+ +. +.....+.+.++++...+.+++.
T Consensus 131 ~~~~~~~---~~---~~-~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 131 QDLARSY---GI---PY-IETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp HHHHHHH---TC---CE-EEECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHc---CC---eE-EEecCCCCCCHHHHHHHHHHHHH
Confidence 3333221 11 11 11233555667777766665543
No 203
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.74 E-value=4.1e-05 Score=63.18 Aligned_cols=66 Identities=9% Similarity=-0.040 Sum_probs=41.5
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHH-HHH---HcCCCcEEEEeCCCCCCh
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLG-LAL---ALSVPVFVVVTKIDMCPP 81 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~-l~~---~l~i~~~v~lnk~Dl~~~ 81 (320)
..+.++|+||+++|. .......+|.+++ |++++++.. ....+.+. +.+ ..++|.++++||+|+...
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 62 LKLNVWDLGGQTSIRPYWRCYYADTAAVIF--VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp EEEEEEEEC----CCTTGGGTTTTEEEEEE--EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 457889999999988 3444667888877 999987532 22333332 222 245688899999999764
No 204
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.74 E-value=7.8e-06 Score=80.56 Aligned_cols=36 Identities=31% Similarity=0.262 Sum_probs=31.8
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCc-eee-ec
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRG-HAR-QK 237 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G-~i~-~~ 237 (320)
.|+.++|+|+||||||||+++|+ +.+.|.+| .+. ++
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La-~~L~~~~G~~i~~lD 405 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALA-ARLMEMGGRCVTLLD 405 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHH-HHHHTTCSSCEEEES
T ss_pred cceEEEEECCCCChHHHHHHHHH-HhhcccCCceEEEEC
Confidence 48999999999999999999999 99998886 564 44
No 205
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.73 E-value=5.1e-05 Score=63.89 Aligned_cols=66 Identities=9% Similarity=-0.052 Sum_probs=44.1
Q ss_pred CceEEEeCCCcchhhcc-----CCCCccchhhhccceecCCCCchhHHHHH-HHHHH-----cCCCcEEEEeCCCCCChh
Q psy15138 14 NAASVFETRIHERDDDL-----PEASPADHSMLQSKVGANAGIVGMTKEHL-GLALA-----LSVPVFVVVTKIDMCPPN 82 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~~~-----~~~~~~d~~~l~~vv~a~~g~~~~t~~~l-~l~~~-----l~i~~~v~lnk~Dl~~~~ 82 (320)
-.+.++|+||+++|..+ .-...+|.+++ |+++++.... ..+++ ..... -++|+++|.||+|+.+.+
T Consensus 69 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~--v~d~~~~~~~-~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~ 145 (196)
T 3llu_A 69 VNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIY--VIDAQDDYME-ALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDD 145 (196)
T ss_dssp CCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEE--EEETTSCCHH-HHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHH
T ss_pred eEEEEEECCCCHHHHhhhhhcccccccCCEEEE--EEECCCchHH-HHHHHHHHHHHHHhcCCCCcEEEEEeccccCchh
Confidence 45889999999999732 22445677777 9999986322 22222 22222 256888889999998754
No 206
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.73 E-value=1.8e-05 Score=68.78 Aligned_cols=44 Identities=11% Similarity=0.006 Sum_probs=33.6
Q ss_pred cccCCccCcEEEEEcCCCChHHHHHHHHhcC--cCCC-----CCceeeeccc
Q psy15138 195 VESQDFLEIRVAVVGNVDAGKSTLLGVLTHG--ELDN-----GRGHARQKLF 239 (320)
Q Consensus 195 l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G--~l~~-----~~G~i~~~~~ 239 (320)
+......|+.++|+||||||||||++.|+ + .++| +.|.+.+...
T Consensus 17 l~ggi~~G~~~~i~G~~GsGKTtl~~~l~-~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 17 LQGGIETGSITEMFGEFRTGKTQICHTLA-VTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp TTTSEETTSEEEEECCTTSSHHHHHHHHH-HHTTSCGGGTCCSSEEEEEESS
T ss_pred hcCCCcCCeEEEEECCCCCcHHHHHHHHH-HHHhCchhcCCCCCeEEEEECC
Confidence 33344459999999999999999999999 8 4554 5667776543
No 207
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.70 E-value=7.3e-05 Score=62.49 Aligned_cols=65 Identities=17% Similarity=0.108 Sum_probs=45.2
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHH-HHHHHHHHc--CCCcEEEEeCCCCCCh
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTK-EHLGLALAL--SVPVFVVVTKIDMCPP 81 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~-~~l~l~~~l--~i~~~v~lnk~Dl~~~ 81 (320)
.+.++|+|||++|. .-.-...+|.+++ |++++++..- ..+ ..+..++.. ++|+++|.||+|+...
T Consensus 67 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 67 LLGLYDTAGQEDYDRLRPLSYPMTDVFLI--CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp EEEEECCCCSSSSTTTGGGGCTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTC
T ss_pred EEEEEECCCCcchhHHHHHhcCCCCEEEE--EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccc
Confidence 46788999999998 3333566788877 9999874321 122 344444444 6799999999999764
No 208
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.68 E-value=1.3e-05 Score=67.79 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
+++|+|+||||||||++.|+ |..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~-~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFT-RNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHH-HSC
T ss_pred EEEEECcCCCCHHHHHHHHh-cCC
Confidence 58999999999999999999 764
No 209
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.68 E-value=1.7e-05 Score=65.28 Aligned_cols=64 Identities=14% Similarity=0.075 Sum_probs=43.4
Q ss_pred ceEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc---CCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL---SVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|..+ .....+|.+++ |++++++.. ...++.+..+... ++|+++++||+|+.+
T Consensus 62 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 62 KFEIWDTAGQERYHSLAPMYYRGAAAAII--VFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131 (181)
T ss_dssp EEEEEECCCSGGGGGGTHHHHTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred EEEEEeCCCChhhhhhhHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 5788999999999822 22345677777 999987443 2334444444443 557888999999964
No 210
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.68 E-value=1.2e-05 Score=67.22 Aligned_cols=63 Identities=16% Similarity=0.085 Sum_probs=43.4
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchh-HHHHH-HHHHHcCCCcEEEEeCCCC
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGM-TKEHL-GLALALSVPVFVVVTKIDM 78 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~-t~~~l-~l~~~l~i~~~v~lnk~Dl 78 (320)
..+.++|+|||++|. .......+|.+++ |++++.+..-. .++.+ .+....++|+++|+||+|+
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~ 159 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIV--VFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDK 159 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTC
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEE--EEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCc
Confidence 468899999999998 2222446677777 99998754322 22233 4444456788999999994
No 211
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.67 E-value=7.9e-05 Score=62.96 Aligned_cols=67 Identities=13% Similarity=0.133 Sum_probs=46.2
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc--hhHHHHHHHHHHc--CCCcEEEEeCCCCCChhH
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV--GMTKEHLGLALAL--SVPVFVVVTKIDMCPPNV 83 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~l--~i~~~v~lnk~Dl~~~~~ 83 (320)
.+.++|+||+++|. .-.....+|.+++ |++++.... ......+..++.. ++|+++|+||+|+.+...
T Consensus 74 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 146 (201)
T 2gco_A 74 ELALWDTAGQEDYDRLRPLSYPDTDVILM--CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 146 (201)
T ss_dssp EEEEECCCCSGGGTTTGGGGCTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHH
T ss_pred EEEEEECCCchhHHHHHHHhcCCCCEEEE--EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCcc
Confidence 47788999999998 2333567788877 998886322 2223344444444 679999999999976543
No 212
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.67 E-value=3.5e-05 Score=63.34 Aligned_cols=64 Identities=14% Similarity=0.071 Sum_probs=39.1
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHH---cCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALA---LSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~---l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|. .......+|.+++ |++++++.. ...++.+..+.. .++|.++++||+|+.+
T Consensus 61 ~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 61 KLQMWDTAGQERFRSVTHAYYRDAHALLL--LYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp EEEEEECCCC--------CCGGGCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred EEEEEeCCCcHHHHHHHHHHccCCCEEEE--EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 47788999999998 3334556777777 999987432 122333433333 3568889999999974
No 213
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.67 E-value=7.6e-05 Score=62.08 Aligned_cols=63 Identities=13% Similarity=-0.020 Sum_probs=36.3
Q ss_pred eEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHHHHHHH----cCCCcEEEEeCCCCCC
Q psy15138 16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHLGLALA----LSVPVFVVVTKIDMCP 80 (320)
Q Consensus 16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~----l~i~~~v~lnk~Dl~~ 80 (320)
+.++|+||+++|. .-.....+|.+++ |++++++..- ...+.+..+.. .++|.++|+||+|+.+
T Consensus 71 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 71 LDILDTAGQEEYSAMRDQYMRTGEGFLC--VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp EEEEECCC-----------CTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred EEEEECCChHHHHHHHHHhhCcCCEEEE--EEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 7789999999998 3333556777777 9998874321 12222322222 2679999999999875
No 214
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.67 E-value=4.9e-05 Score=67.79 Aligned_cols=76 Identities=11% Similarity=0.069 Sum_probs=48.6
Q ss_pred ceEEEeCCCcchhhccC-----------CCCccchhhhccceecCC-CCchhHHHHHHHH-HHcC----CCcEEEEeCCC
Q psy15138 15 AASVFETRIHERDDDLP-----------EASPADHSMLQSKVGANA-GIVGMTKEHLGLA-LALS----VPVFVVVTKID 77 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~~~-----------~~~~~d~~~l~~vv~a~~-g~~~~t~~~l~l~-~~l~----i~~~v~lnk~D 77 (320)
.+.|+|+||+++|..+. -...+|.+++ |++++. .......+.+..+ ...+ .|.++|+||+|
T Consensus 88 ~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~--v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~D 165 (270)
T 1h65_A 88 TLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLY--VDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQ 165 (270)
T ss_dssp EEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEE--EEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCS
T ss_pred EEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEE--EEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcc
Confidence 48899999998876211 1336888877 877765 3444444444333 3334 47889999999
Q ss_pred CCChh--HHHHHHHHHH
Q psy15138 78 MCPPN--VLQDTLKLLV 92 (320)
Q Consensus 78 l~~~~--~le~~l~~~~ 92 (320)
+.+++ .+++++++..
T Consensus 166 l~~~~~~~~~~~~~~~~ 182 (270)
T 1h65_A 166 FSPPDGLPYDEFFSKRS 182 (270)
T ss_dssp CCCGGGCCHHHHHHHHH
T ss_pred cCCcCCCCHHHHHHHHH
Confidence 98654 4555554433
No 215
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.66 E-value=8.7e-06 Score=72.25 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=27.6
Q ss_pred eeeeeec-CCCeeeeecceeccccCCc---c---CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 175 LLRQRKL-DNGLTGQYLLRKRVESQDF---L---EIRVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 175 ~~~~~~~-~~~~~~~~~~~~~l~~~~~---~---g~~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
.++++++ ++.|. ....+++++++ . |++++|+|++||||||+.++|+ +.+
T Consensus 17 ~l~~~~~~~~~~~---~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La-~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD---EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMA-RSL 72 (250)
T ss_dssp ------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHH-HHH
T ss_pred ceEEcceeeEEec---CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHH-Hhc
Confidence 5666766 66552 22344555544 3 8899999999999999999998 643
No 216
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.66 E-value=4e-05 Score=62.20 Aligned_cols=106 Identities=17% Similarity=0.106 Sum_probs=58.2
Q ss_pred ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc---CCCcEEEEeCCCCCChhHHHHHH
Q psy15138 15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL---SVPVFVVVTKIDMCPPNVLQDTL 88 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~~~~le~~l 88 (320)
.+.++|+|||++|.. ......+|.+++ |++++.+.. ...++.+...... ++|.++++||+|+.......+..
T Consensus 53 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 130 (170)
T 1g16_A 53 KLQIWDTAGQERFRTITTAYYRGAMGIIL--VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQG 130 (170)
T ss_dssp EEEEECCTTGGGTSCCCHHHHTTEEEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHH
T ss_pred EEEEEeCCCChhhhhhHHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHH
Confidence 477889999999982 222456777777 999987432 1223334333332 56888999999995322212222
Q ss_pred HHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHH
Q psy15138 89 KLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLID 129 (320)
Q Consensus 89 ~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~ 129 (320)
.++...+ .+ ++ +.....+.+..+++...+.+.+.
T Consensus 131 ~~~~~~~---~~---~~-~~~Sa~~~~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 131 EALAKEL---GI---PF-IESSAKNDDNVNEIFFTLAKLIQ 164 (170)
T ss_dssp HHHHHHH---TC---CE-EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHc---CC---eE-EEEECCCCCCHHHHHHHHHHHHH
Confidence 2232211 11 11 11233455566666666655543
No 217
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.65 E-value=2.9e-05 Score=66.17 Aligned_cols=78 Identities=17% Similarity=0.125 Sum_probs=48.0
Q ss_pred CceEEEeCCCcchhhc-c-CC-CCccchhhhccceecCCCCchhHHHHH----HHHH-----HcCCCcEEEEeCCCCCCh
Q psy15138 14 NAASVFETRIHERDDD-L-PE-ASPADHSMLQSKVGANAGIVGMTKEHL----GLAL-----ALSVPVFVVVTKIDMCPP 81 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~~-~-~~-~~~~d~~~l~~vv~a~~g~~~~t~~~l----~l~~-----~l~i~~~v~lnk~Dl~~~ 81 (320)
-.+.++|+|||++|.. + .. ...+|.+++ |++++. ......+.. .+.. ..++|+++|.||+|+.+.
T Consensus 54 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~--v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 54 NSLTLIDLPGHESLRFQLLDRFKSSARAVVF--VVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHGGGEEEEEE--EEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred cEEEEEECCCChhHHHHHHHHHHhhCCEEEE--EEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 3588999999999982 2 21 456777777 999876 222222221 1211 124688899999999765
Q ss_pred hHHHHHHHHHHHh
Q psy15138 82 NVLQDTLKLLVRI 94 (320)
Q Consensus 82 ~~le~~l~~~~~~ 94 (320)
...+...+.+...
T Consensus 131 ~~~~~~~~~l~~~ 143 (214)
T 2fh5_B 131 KSAKLIQQQLEKE 143 (214)
T ss_dssp CCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 5455555555443
No 218
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.65 E-value=7.1e-05 Score=63.08 Aligned_cols=65 Identities=18% Similarity=0.142 Sum_probs=43.1
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHH-HHHHH------cCCCcEEEEeCCCCCCh
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHL-GLALA------LSVPVFVVVTKIDMCPP 81 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l-~l~~~------l~i~~~v~lnk~Dl~~~ 81 (320)
.+.++|+|||++|. .......+|.+++ |++++.+..- .....+ .+... .++|+++|+||+|+...
T Consensus 58 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (207)
T 1vg8_A 58 TMQIWDTAGQERFQSLGVAFYRGADCCVL--VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR 132 (207)
T ss_dssp EEEEEEECSSGGGSCSCCGGGTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC
T ss_pred EEEEEeCCCcHHHHHhHHHHHhCCcEEEE--EEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc
Confidence 47889999999998 2333456777777 9999874321 112222 22222 36789999999999743
No 219
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.64 E-value=2.3e-05 Score=66.00 Aligned_cols=108 Identities=10% Similarity=-0.037 Sum_probs=55.0
Q ss_pred CceEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCc-hhHHHHH-HHHHH---cCCCcEEEEeCCCCCChhHHHH
Q psy15138 14 NAASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIV-GMTKEHL-GLALA---LSVPVFVVVTKIDMCPPNVLQD 86 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~~---l~i~~~v~lnk~Dl~~~~~le~ 86 (320)
..+.++|+||+++|..+ .....+|.+++ |++++++.. ....+.+ .+.+. .++|+++|+||+|+......++
T Consensus 73 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil--v~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~ 150 (192)
T 2b6h_A 73 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIF--VVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSE 150 (192)
T ss_dssp EEEEEEECC-----CTTHHHHHHTCCEEEE--EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHH
Confidence 35788999999999722 22356777777 999987532 2222233 22221 2568899999999976533333
Q ss_pred HHHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHH
Q psy15138 87 TLKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSL 127 (320)
Q Consensus 87 ~l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~ 127 (320)
+.+.+... .+......+. ....+.+..+++...+.++
T Consensus 151 i~~~~~~~----~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 188 (192)
T 2b6h_A 151 LTDKLGLQ----HLRSRTWYVQATCATQGTGLYDGLDWLSHE 188 (192)
T ss_dssp HHHHTTGG----GCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHhCcc----cccCCceEEEECcCCCcCCHHHHHHHHHHH
Confidence 32222211 1111111122 2345556677776666554
No 220
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.63 E-value=2.8e-05 Score=64.51 Aligned_cols=66 Identities=11% Similarity=0.041 Sum_probs=45.1
Q ss_pred CceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHH-HHHH---HcCCCcEEEEeCCCCCCh
Q psy15138 14 NAASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLAL---ALSVPVFVVVTKIDMCPP 81 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~---~l~i~~~v~lnk~Dl~~~ 81 (320)
..+.++|+||+++|. ...-...+|.+++ |++++++.. ...++.+ .+.+ ..++|+++|+||+|+...
T Consensus 65 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~--v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 65 TRFLMWDIGGQESLRSSWNTYYTNTEFVIV--VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp EEEEEEEESSSGGGTCGGGGGGTTCCEEEE--EEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 357889999999998 2333556788877 999987632 2222333 3333 246688999999999764
No 221
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.63 E-value=2.1e-05 Score=65.75 Aligned_cols=107 Identities=11% Similarity=0.062 Sum_probs=59.2
Q ss_pred ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCc-hhHHHHH-HHHHH---cCCCcEEEEeCCCCCChhHHHHH
Q psy15138 15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLALA---LSVPVFVVVTKIDMCPPNVLQDT 87 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~~---l~i~~~v~lnk~Dl~~~~~le~~ 87 (320)
.+.++|+||+++|.. ......+|.+++ |+++++... ...++.+ .+.+. .++|+++|+||+|+......+++
T Consensus 68 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~--v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~ 145 (188)
T 1zd9_A 68 TIKLWDIGGQPRFRSMWERYCRGVSAIVY--MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKEL 145 (188)
T ss_dssp EEEEEEECCSHHHHTTHHHHHTTCSEEEE--EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHH
T ss_pred EEEEEECCCCHhHHHHHHHHHccCCEEEE--EEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHH
Confidence 477899999999982 122356777777 999986432 2222233 33332 56789999999999754333333
Q ss_pred HHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHH
Q psy15138 88 LKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSL 127 (320)
Q Consensus 88 l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~ 127 (320)
.+.+.... +......+. ....+.+.++++...+.+.
T Consensus 146 ~~~~~~~~----~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 182 (188)
T 1zd9_A 146 IEKMNLSA----IQDREICCYSISCKEKDNIDITLQWLIQH 182 (188)
T ss_dssp HHHTTGGG----CCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred HHHhChhh----hccCCeeEEEEECCCCCCHHHHHHHHHHH
Confidence 22222110 111111122 2335556677766665543
No 222
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.63 E-value=0.00011 Score=62.70 Aligned_cols=68 Identities=16% Similarity=0.068 Sum_probs=35.7
Q ss_pred ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCchhH--HHHHHHHHHc--CCCcEEEEeCCCCCChhHH
Q psy15138 15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIVGMT--KEHLGLALAL--SVPVFVVVTKIDMCPPNVL 84 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~~~t--~~~l~l~~~l--~i~~~v~lnk~Dl~~~~~l 84 (320)
.+.++|+||+++|.. -.....+|.+++ |++++++..-.. ...+..++.. ++|+++|.||+|+......
T Consensus 83 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 156 (214)
T 2j1l_A 83 HLHIWDTAGQDDYDRLRPLFYPDASVLLL--CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSL 156 (214)
T ss_dssp EEEEEEC---------------CEEEEEE--EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHH
T ss_pred EEEEEECCCchhhhHHHHHHhccCCEEEE--EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchh
Confidence 477889999999982 223557788877 999886322111 1223333322 5689999999999765443
No 223
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.62 E-value=1.7e-05 Score=81.47 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=27.7
Q ss_pred ccccCCcc--CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 194 RVESQDFL--EIRVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 194 ~l~~~~~~--g~~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
+++++++. |++++|+||||||||||||+|+ |..
T Consensus 597 vlndisl~~~g~i~~ItGpNGsGKSTlLr~ia-gl~ 631 (800)
T 1wb9_A 597 IANPLNLSPQRRMLIITGPNMGGKSTYMRQTA-LIA 631 (800)
T ss_dssp CCEEEEECSSSCEEEEECCTTSSHHHHHHHHH-HHH
T ss_pred eeecccccCCCcEEEEECCCCCChHHHHHHHH-HHH
Confidence 45555554 8999999999999999999999 864
No 224
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.61 E-value=2.1e-05 Score=75.09 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCc
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRG 232 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G 232 (320)
++.++|+||||||||||+.+|. +++.+.+.
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~-~~~~~~~~ 55 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAIS-FVLGVRSN 55 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH-HHTTC---
T ss_pred CCEEEEECCCCCCHHHHHHHHH-hhhccccc
Confidence 7889999999999999999999 98887653
No 225
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.61 E-value=1.6e-05 Score=78.41 Aligned_cols=76 Identities=21% Similarity=0.080 Sum_probs=58.2
Q ss_pred ceEEEeCCCcch-----------hh--ccCCCCccchhhhccceecCC-CCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHER-----------DD--DLPEASPADHSMLQSKVGANA-GIVGMTKEHLGLALALSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~-----------~~--~~~~~~~~d~~~l~~vv~a~~-g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~ 80 (320)
.+.|+|+||+.+ |. .......+|.+++ |++++. +.....++.+..++..+.|.++|+||+|+.+
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~--VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIIL--LFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVE 232 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEE--EEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSC
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEE--EEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccC
Confidence 589999999986 43 1122345677777 999987 6777777777776666678999999999998
Q ss_pred hhHHHHHHHHHH
Q psy15138 81 PNVLQDTLKLLV 92 (320)
Q Consensus 81 ~~~le~~l~~~~ 92 (320)
.+.++...+.+.
T Consensus 233 ~~el~~~~~~l~ 244 (550)
T 2qpt_A 233 TQQLMRVYGALM 244 (550)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 888877777664
No 226
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.61 E-value=2.8e-05 Score=66.07 Aligned_cols=33 Identities=30% Similarity=0.419 Sum_probs=22.9
Q ss_pred ccccCCcc---CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 194 RVESQDFL---EIRVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 194 ~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
.++++++. +.+++|+||+||||||+.+.|+ ..+
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La-~~l 49 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFA-RKL 49 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHH-HHH
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHH-HHc
Confidence 34455554 8899999999999999999998 554
No 227
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.61 E-value=2.3e-05 Score=65.38 Aligned_cols=64 Identities=14% Similarity=0.045 Sum_probs=43.9
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc---CCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL---SVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|. .......+|.+++ |++++.+.. ...++.+..++.. ++|+++|+||+|+.+
T Consensus 72 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 72 KLQIWDTAGQERYRTITTAYYRGAMGFLL--MYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED 141 (189)
T ss_dssp EEEEEECCSCCSSCCSGGGGGTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred EEEEEeCCCcHHHhhhHHHhccCCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 47788999999998 3333556777777 999986432 2233344444443 568899999999964
No 228
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.60 E-value=2.4e-05 Score=65.35 Aligned_cols=78 Identities=12% Similarity=0.133 Sum_probs=46.7
Q ss_pred CceEEEeCCCcchhh-ccCC-----CCccchhhhccceecCCCCchhH--HHHH-HHHHH------cCCCcEEEEeCCCC
Q psy15138 14 NAASVFETRIHERDD-DLPE-----ASPADHSMLQSKVGANAGIVGMT--KEHL-GLALA------LSVPVFVVVTKIDM 78 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~-~~~~-----~~~~d~~~l~~vv~a~~g~~~~t--~~~l-~l~~~------l~i~~~v~lnk~Dl 78 (320)
..+.++|+|||++|. .... ...+|.+++ |++++....... .+.+ .+... -++|+++|+||+|+
T Consensus 91 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~--v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 168 (193)
T 2ged_A 91 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIF--MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 168 (193)
T ss_dssp TTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEE--EEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred CeEEEEECCCCchHHHHHHHHHHhhcccCCEEEE--EEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence 457899999999986 1111 123677777 999883222211 1222 22221 26789999999999
Q ss_pred CChhHHHHHHHHHHH
Q psy15138 79 CPPNVLQDTLKLLVR 93 (320)
Q Consensus 79 ~~~~~le~~l~~~~~ 93 (320)
......++..+.+..
T Consensus 169 ~~~~~~~~~~~~l~~ 183 (193)
T 2ged_A 169 FTARPPSKIKDALES 183 (193)
T ss_dssp TTCCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 765545555444443
No 229
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.59 E-value=1.8e-05 Score=72.35 Aligned_cols=37 Identities=22% Similarity=0.164 Sum_probs=32.7
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL 238 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~ 238 (320)
.+++++|+|||||||||+++.|+ +.+.+..|.+.+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA-~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLA-KMFVDEGKSVVLAA 139 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH-HHHHHTTCCEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHH-HHHHhcCCEEEEEc
Confidence 37889999999999999999999 99988888887653
No 230
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.59 E-value=3.3e-05 Score=71.20 Aligned_cols=110 Identities=8% Similarity=-0.042 Sum_probs=59.0
Q ss_pred CceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCc--hhHHHHHHHHHHc---CCCcEEEEeCCCCCChhHHHH
Q psy15138 14 NAASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIV--GMTKEHLGLALAL---SVPVFVVVTKIDMCPPNVLQD 86 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~~~~le~ 86 (320)
..+.|+|+|||++|.. ......+|.+++ |+++++... ........+.... ++|++||+||+|+......++
T Consensus 209 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil--V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~ 286 (329)
T 3o47_A 209 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF--VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 286 (329)
T ss_dssp EEEEEEECC-----CCSHHHHHTTEEEEEE--EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEE--EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHH
Confidence 3578999999999982 222456788877 999976332 2333333443333 668889999999976544444
Q ss_pred HHHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHHHH
Q psy15138 87 TLKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSLID 129 (320)
Q Consensus 87 ~l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~~~ 129 (320)
+..++... ........+. ....+...++++...+.+.+.
T Consensus 287 i~~~~~~~----~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 287 ITDKLGLH----SLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp HHHHHTCT----TCCSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHHhchh----hhhcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 43333221 1111111222 234556677777776665543
No 231
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.58 E-value=1.9e-05 Score=71.83 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=30.4
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCc-eeee
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRG-HARQ 236 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G-~i~~ 236 (320)
.|++++++||||+||||+++.|+ +.+.+.+| .+.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA-~~l~~~~G~~V~l 139 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA-AISMLEKHKKIAF 139 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH-HHHHHTTCCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHH-HHHHHhcCCEEEE
Confidence 47889999999999999999999 99988777 4544
No 232
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.58 E-value=8.6e-05 Score=61.50 Aligned_cols=113 Identities=18% Similarity=0.287 Sum_probs=59.5
Q ss_pred ceEEEeCCC-----------cchhh-c----cCC-CCccchhhhccceecCC-----------CCchhHHHHHHHHHHcC
Q psy15138 15 AASVFETRI-----------HERDD-D----LPE-ASPADHSMLQSKVGANA-----------GIVGMTKEHLGLALALS 66 (320)
Q Consensus 15 ~~~~~d~pg-----------h~~~~-~----~~~-~~~~d~~~l~~vv~a~~-----------g~~~~t~~~l~l~~~l~ 66 (320)
.+.++|+|| +++|. + +.. +..++.++. ++++.. +..++..+.+..+...+
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVL--VVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 122 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEE--EEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEE--EEcchhhhhHHHhhhccCccHHHHHHHHHHHhcC
Confidence 578899999 56665 1 222 333334333 666543 12223334445555678
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHHHHcCc
Q psy15138 67 VPVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSLIDNGR 132 (320)
Q Consensus 67 i~~~v~lnk~Dl~~~~~le~~l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~~~~~~ 132 (320)
+|.++|+||+|+.... ++..+++...+.. .+......+. .+..+.+..+++...+.+.+.+..
T Consensus 123 ~piilv~nK~Dl~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 123 IPTIVAVNKLDKIKNV--QEVINFLAEKFEV-PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp CCEEEEEECGGGCSCH--HHHHHHHHHHHTC-CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred CceEEEeehHhccCcH--HHHHHHHHHHhhh-hhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 8999999999997654 3333444433221 1111001112 233556667777777666555443
No 233
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.57 E-value=5.3e-05 Score=64.66 Aligned_cols=70 Identities=7% Similarity=0.106 Sum_probs=43.6
Q ss_pred CceEEEeCCCcchhh-ccCC-----CCccchhhhccceecC---CCCchhHHHHHHHHHH------cCCCcEEEEeCCCC
Q psy15138 14 NAASVFETRIHERDD-DLPE-----ASPADHSMLQSKVGAN---AGIVGMTKEHLGLALA------LSVPVFVVVTKIDM 78 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~-~~~~-----~~~~d~~~l~~vv~a~---~g~~~~t~~~l~l~~~------l~i~~~v~lnk~Dl 78 (320)
..+.++|+|||++|. +... ...+|.+++ |++++ +...........+... -++|++++.||+|+
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~--v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 132 (218)
T 1nrj_B 55 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIF--MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 132 (218)
T ss_dssp SSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEE--EEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred ceEEEEECCCcHHHHHHHHHHHHhccccCCEEEE--EEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence 357899999999997 1111 123677766 99988 2222233322233322 36789999999999
Q ss_pred CChhHHH
Q psy15138 79 CPPNVLQ 85 (320)
Q Consensus 79 ~~~~~le 85 (320)
.+....+
T Consensus 133 ~~~~~~~ 139 (218)
T 1nrj_B 133 FTARPPS 139 (218)
T ss_dssp TTCCCHH
T ss_pred cccCCHH
Confidence 7654443
No 234
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.56 E-value=4e-05 Score=65.32 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELD 228 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~ 228 (320)
+..++|+|++||||||+++.|. +.++
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~-~~~~ 46 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQ-KHLP 46 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH-TTST
T ss_pred CeEEEEECCCCCCHHHHHHHHH-HhcC
Confidence 7789999999999999999999 8753
No 235
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.56 E-value=0.00021 Score=58.41 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=58.3
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHHH-HHHH------cCCCcEEEEeCCCCCChhHH
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHLG-LALA------LSVPVFVVVTKIDMCPPNVL 84 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~-l~~~------l~i~~~v~lnk~Dl~~~~~l 84 (320)
.+.++|+||+++|. ...-...+|.+++ |++++.+..- ..+..+. +... .++|.++++||+|+......
T Consensus 57 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~ 134 (177)
T 1wms_A 57 TMQIWDTAGQERFRSLRTPFYRGSDCCLL--TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVS 134 (177)
T ss_dssp EEEEEECCCCGGGHHHHGGGGTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSC
T ss_pred EEEEEeCCCchhhhhhHHHHHhcCCEEEE--EEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccC
Confidence 57889999999998 3333456777777 9998874321 1121221 1111 45688999999999632221
Q ss_pred HHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHH
Q psy15138 85 QDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLID 129 (320)
Q Consensus 85 e~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~ 129 (320)
.+...++... .. ..++ +-....+.+..+++...+.+++.
T Consensus 135 ~~~~~~~~~~--~~---~~~~-~~~Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 135 TEEAQAWCRD--NG---DYPY-FETSAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp HHHHHHHHHH--TT---CCCE-EECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--cC---CceE-EEEeCCCCCCHHHHHHHHHHHHH
Confidence 2222222221 11 1111 11233555667776666655543
No 236
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.55 E-value=3.7e-05 Score=63.49 Aligned_cols=65 Identities=15% Similarity=0.095 Sum_probs=44.1
Q ss_pred eEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHH--HHHHHHHHc--CCCcEEEEeCCCCCChh
Q psy15138 16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTK--EHLGLALAL--SVPVFVVVTKIDMCPPN 82 (320)
Q Consensus 16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~--~~l~l~~~l--~i~~~v~lnk~Dl~~~~ 82 (320)
+.++|+|||++|. .-.....+|.+++ |++++++..-... ..+..++.. ++|+++|+||+|+.+..
T Consensus 55 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 125 (186)
T 1mh1_A 55 LGLWDTAGQEDYDRLRPLSYPQTDVSLI--CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 125 (186)
T ss_dssp EEEECCCCSGGGTTTGGGGCTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCH
T ss_pred EEEEECCCCHhHHHHHHHhccCCcEEEE--EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccc
Confidence 5588999999998 2233567788877 9999874322111 233334333 67999999999996543
No 237
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.55 E-value=7.8e-05 Score=62.73 Aligned_cols=64 Identities=13% Similarity=0.020 Sum_probs=42.0
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHH------cCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALA------LSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~------l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+||+++|. ...-...+|.+++ |++++++.. ...++.+..+.. .++|+++|+||+|+..
T Consensus 74 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 74 ELFLLDTAGSDLYKEQISQYWNGVYYAIL--VFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp EEEEEETTTTHHHHHHHSTTCCCCCEEEE--EEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred EEEEEECCCcHHHHHHHHHHHhhCcEEEE--EEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 47889999999998 3344567788877 999987543 223334433333 3668899999999976
No 238
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.55 E-value=7.4e-05 Score=61.68 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=40.4
Q ss_pred eEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCc--hhHHHHHHH---HHHcCCCcEEEEeCCCCCC
Q psy15138 16 ASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIV--GMTKEHLGL---ALALSVPVFVVVTKIDMCP 80 (320)
Q Consensus 16 ~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l---~~~l~i~~~v~lnk~Dl~~ 80 (320)
+.++|+|||++|..+ .-...+|.+++ |++++++.. ......-.+ ....++|++++.||+|+..
T Consensus 68 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 68 LDVLDTAGQEEFSAMREQYMRTGDGFLI--VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp EEEEECCSCGGGCSSHHHHHHHCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred EEEEECCCchhhHHHHHHHHhcCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 566999999999822 22345677777 999987421 111111122 2335668899999999864
No 239
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.55 E-value=3.5e-05 Score=69.20 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=27.1
Q ss_pred EEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138 205 VAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL 238 (320)
Q Consensus 205 v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~ 238 (320)
++|+||||+|||||+++|+ |.+.+ |.+.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala-~~~~~--~~i~i~g 77 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVA-NESGL--NFISVKG 77 (274)
T ss_dssp EEEESSTTSCHHHHHHHHH-HHTTC--EEEEEET
T ss_pred EEEECCCCCcHHHHHHHHH-HHcCC--CEEEEEc
Confidence 8999999999999999999 98776 6776654
No 240
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.55 E-value=6.6e-05 Score=62.25 Aligned_cols=64 Identities=11% Similarity=-0.054 Sum_probs=44.4
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHHHHHHH----cCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHLGLALA----LSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~----l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|. .......+|.+++ |++++.+..- ..++.+..+.. .++|+++|+||+|+..
T Consensus 71 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLL--LFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED 141 (195)
T ss_dssp EEEEEEECCSGGGHHHHHHTTTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG
T ss_pred EEEEEeCCCcHHHHHHHHHHHcCCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 58889999999998 3334567788877 9999874432 22334433322 3668899999999964
No 241
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.55 E-value=2.4e-05 Score=81.47 Aligned_cols=37 Identities=19% Similarity=0.115 Sum_probs=29.4
Q ss_pred ccccCCcc---CcEEEEEcCCCChHHHHHHHH--------hcCcCCCCC
Q psy15138 194 RVESQDFL---EIRVAVVGNVDAGKSTLLGVL--------THGELDNGR 231 (320)
Q Consensus 194 ~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l--------~~G~l~~~~ 231 (320)
+++++++. |+.++|+||||||||||||++ . |..-|..
T Consensus 651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~-G~~vpa~ 698 (934)
T 3thx_A 651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQI-GCFVPCE 698 (934)
T ss_dssp CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHH-TCCBSEE
T ss_pred ecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhc-CCccccc
Confidence 44555554 899999999999999999999 6 7665544
No 242
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.54 E-value=0.00015 Score=59.38 Aligned_cols=64 Identities=19% Similarity=0.127 Sum_probs=36.6
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHH-HHHHH------cCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHL-GLALA------LSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l-~l~~~------l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|. ...-...+|.+++ |++++++..- ..++.+ .+... .++|+++++||+|+..
T Consensus 59 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 59 TMQVWDTAGQERFQSLGVAFYRGADCCVL--VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp EEEEECCC----------CCSTTCCEEEE--EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred EEEEEECCCChHhhhhhHHHhhcCCEEEE--EEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 47889999999998 3344567788777 9999874321 112222 22222 4668999999999953
No 243
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.53 E-value=2.7e-05 Score=80.93 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=26.0
Q ss_pred eccccCCcc---CcEEEEEcCCCChHHHHHHHHh
Q psy15138 193 KRVESQDFL---EIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 193 ~~l~~~~~~---g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
.+++++++. |+.++|+||||||||||||+++
T Consensus 661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHH
T ss_pred eecccccccCCCCeEEEEECCCCCchHHHHHHHH
Confidence 345566654 8999999999999999999986
No 244
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.53 E-value=4e-05 Score=63.43 Aligned_cols=76 Identities=14% Similarity=0.114 Sum_probs=42.2
Q ss_pred eEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCc--hhHHHHHHHHHH---cCCCcEEEEeCCCCCChhHHHHHH
Q psy15138 16 ASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIV--GMTKEHLGLALA---LSVPVFVVVTKIDMCPPNVLQDTL 88 (320)
Q Consensus 16 ~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~---l~i~~~v~lnk~Dl~~~~~le~~l 88 (320)
+.++|+|||++|..+ .-...+|.+++ |++++++.. ......-.+... .++|+++++||+|+.+.....+..
T Consensus 54 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~ 131 (189)
T 4dsu_A 54 LDILDTAGQEEYSAMRDQYMRTGEGFLC--VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQA 131 (189)
T ss_dssp EEEEECCCC---CTTHHHHHHHCSEEEE--EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHhcCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHH
Confidence 567899999999822 12345677766 888886432 111212233332 356889999999997543333333
Q ss_pred HHHHH
Q psy15138 89 KLLVR 93 (320)
Q Consensus 89 ~~~~~ 93 (320)
.++..
T Consensus 132 ~~~~~ 136 (189)
T 4dsu_A 132 QDLAR 136 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 245
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.53 E-value=4.5e-05 Score=64.79 Aligned_cols=69 Identities=13% Similarity=0.184 Sum_probs=46.7
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc--hhHHHHHHHHHHc--CCCcEEEEeCCCCCChhHHH
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV--GMTKEHLGLALAL--SVPVFVVVTKIDMCPPNVLQ 85 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~l--~i~~~v~lnk~Dl~~~~~le 85 (320)
.+.++|+||+++|. .-.....+|.+++ |++++.+.. ......+..++.. ++|+++|+||+|+.......
T Consensus 74 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 148 (207)
T 2fv8_A 74 ELALWDTAGQEDYDRLRPLSYPDTDVILM--CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVR 148 (207)
T ss_dssp EEEEEECTTCTTCTTTGGGGCTTCCEEEE--EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHH
T ss_pred EEEEEECCCcHHHHHHHHhhcCCCCEEEE--EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccch
Confidence 47788999999998 2333567788877 999886321 2223344444444 67999999999997654433
No 246
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.52 E-value=0.0001 Score=60.84 Aligned_cols=64 Identities=14% Similarity=0.025 Sum_probs=35.4
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc---CCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL---SVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|. ...-...+|.+++ |++++++.. ...++.+..+... ++|+++|.||+|+..
T Consensus 58 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 58 KLQIWDTAGQERFRTITTAYYRGAMGIML--VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 127 (183)
T ss_dssp EEEEEEC---------CCTTTTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred EEEEEcCCCChhhhhhHHHHHhcCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence 47889999999998 3334567788877 999987432 2223344333332 568889999999964
No 247
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.51 E-value=5.9e-05 Score=61.28 Aligned_cols=64 Identities=14% Similarity=0.053 Sum_probs=38.2
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHH---cCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALA---LSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~---l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|. .-.-...+|.+++ |++++++.. ...++.+..++. .++|+++++||+|+.+
T Consensus 56 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 125 (170)
T 1z08_A 56 NLAIWDTAGQERFHALGPIYYRDSNGAIL--VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 125 (170)
T ss_dssp EEEEEECCCC-------CCSSTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG
T ss_pred EEEEEECCCcHhhhhhHHHHhccCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 46778999999998 2333456777777 999887432 122233322222 3568889999999964
No 248
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.51 E-value=2.6e-05 Score=72.53 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=29.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK 237 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~ 237 (320)
+.+++|+|++|||||||++.|. |.+.+..|.+.+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~-~~~~~~~~~v~V~ 108 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFG-KMLTERGHKLSVL 108 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH-HHHHHTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHH-HHhhhcCCeEEEE
Confidence 4569999999999999999999 8877776666543
No 249
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.51 E-value=2.8e-05 Score=64.72 Aligned_cols=30 Identities=30% Similarity=0.217 Sum_probs=25.6
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCc
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRG 232 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G 232 (320)
.|..++|+|++||||||+++.|+ +.+++ .|
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~-~~l~~-~g 33 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALE-EYLVC-HG 33 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH-HHHHH-TT
T ss_pred CCcEEEEECCCCCCHHHHHHHHH-HHHhh-CC
Confidence 47789999999999999999999 77654 45
No 250
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.50 E-value=4.6e-05 Score=65.08 Aligned_cols=110 Identities=18% Similarity=0.184 Sum_probs=59.7
Q ss_pred ceEEEeCCCcchhhccC--CCCccchhhhccceecCCCCchh-HHHHHHHHHH---cCCCcEEEEeCCCCCChhHHHHHH
Q psy15138 15 AASVFETRIHERDDDLP--EASPADHSMLQSKVGANAGIVGM-TKEHLGLALA---LSVPVFVVVTKIDMCPPNVLQDTL 88 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~~~--~~~~~d~~~l~~vv~a~~g~~~~-t~~~l~l~~~---l~i~~~v~lnk~Dl~~~~~le~~l 88 (320)
.+.++|+||+++|..+. -...+|.+++ |++++++.... ..+.+..+.. .++|+++|+||+|+.+......
T Consensus 62 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-- 137 (218)
T 4djt_A 62 KFNVWDTAGQEKKAVLKDVYYIGASGAIL--FFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISK-- 137 (218)
T ss_dssp EEEEEEECSGGGTSCCCHHHHTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCH--
T ss_pred EEEEEecCCchhhchHHHHHhhcCCEEEE--EEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH--
Confidence 37888999999998222 2345777777 99999754321 1122233332 2568999999999975422211
Q ss_pred HHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHHcCc
Q psy15138 89 KLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNGR 132 (320)
Q Consensus 89 ~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~~~~ 132 (320)
+..........+. + +-.+..+.+.++++...+.+.+.+..
T Consensus 138 ~~~~~~~~~~~~~---~-~~~Sa~~g~gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 138 KLVMEVLKGKNYE---Y-FEISAKTAHNFGLPFLHLARIFTGRP 177 (218)
T ss_dssp HHHHHHTTTCCCE---E-EEEBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHcCCc---E-EEEecCCCCCHHHHHHHHHHHHhccc
Confidence 1222222222221 1 11334555667777777666655443
No 251
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.48 E-value=3.9e-05 Score=65.15 Aligned_cols=66 Identities=14% Similarity=0.038 Sum_probs=45.9
Q ss_pred eEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHH--HHHHHHHHc--CCCcEEEEeCCCCCChhH
Q psy15138 16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTK--EHLGLALAL--SVPVFVVVTKIDMCPPNV 83 (320)
Q Consensus 16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~--~~l~l~~~l--~i~~~v~lnk~Dl~~~~~ 83 (320)
+.++|+||+++|. .-.....+|.+++ |++++++..-... +.+..++.. ++|.++|+||+|+.+...
T Consensus 80 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 151 (204)
T 4gzl_A 80 LGLWDTAGLEDYDRLRPLSYPQTDVFLI--CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 151 (204)
T ss_dssp EEEEEECCSGGGTTTGGGGCTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHH
T ss_pred EEEEECCCchhhHHHHHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchh
Confidence 4589999999998 3334567888888 9999874332221 334444444 678999999999976544
No 252
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.48 E-value=6.1e-05 Score=60.58 Aligned_cols=65 Identities=17% Similarity=0.045 Sum_probs=49.9
Q ss_pred ceEEEeCCCcchh-------h--ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCCh
Q psy15138 15 AASVFETRIHERD-------D--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPP 81 (320)
Q Consensus 15 ~~~~~d~pgh~~~-------~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~ 81 (320)
.+.++|+||++++ . .......+|.+++ |++++.+............+..++|.++++||+|+.+.
T Consensus 50 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~--v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 50 RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLF--AVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKH 123 (161)
T ss_dssp EEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEE--EEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGG
T ss_pred eEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEE--EEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccc
Confidence 5778999999983 2 1222456777777 99999987777766667777778899999999999754
No 253
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.48 E-value=5.4e-05 Score=64.39 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHG 225 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G 225 (320)
+++|+|||||||||+.++|+ +
T Consensus 4 ~i~l~G~~GsGKST~~~~La-~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFT-D 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHH-T
T ss_pred EEEEECCCCCCHHHHHHHHH-H
Confidence 48999999999999999999 7
No 254
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.47 E-value=7e-05 Score=63.43 Aligned_cols=64 Identities=16% Similarity=0.039 Sum_probs=42.2
Q ss_pred ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc---CCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL---SVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|.. ......+|.+++ |++++++.. ...++.+..+... ++|+++|+||+|+..
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 139 (213)
T 3cph_A 70 KLQLWDTAGQERFRTITTAYYRGAMGIIL--VYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 139 (213)
T ss_dssp EEEEECCTTGGGGTCCCHHHHTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSS
T ss_pred EEEEEeCCCcHHHHHHHHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 478899999999982 222445677777 999887432 1223344333332 568889999999953
No 255
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.47 E-value=4e-05 Score=70.44 Aligned_cols=37 Identities=16% Similarity=-0.006 Sum_probs=33.0
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL 238 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~ 238 (320)
.+++++|+||||+||||++..|+ +.+.+..|.+.+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA-~~l~~~g~kVllid 140 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMA-NYYAELGYKVLIAA 140 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHH-HHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHH-HHHHHCCCeEEEEe
Confidence 37889999999999999999999 99988888887753
No 256
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.44 E-value=6.7e-05 Score=62.94 Aligned_cols=64 Identities=17% Similarity=0.096 Sum_probs=43.2
Q ss_pred ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCc-hhHHHHH-HHHH---HcCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLAL---ALSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~---~l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|.. -.....+|.+++ |++++++.. ....+.+ .+.+ ..++|.+++.||+|+..
T Consensus 68 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 68 KFTTFDLGGHIQARRLWKDYFPEVNGIVF--LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp EEEEEECCCSGGGTTSGGGGCTTCCEEEE--EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred EEEEEECCCCHHHHHHHHHHHhcCCEEEE--EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 477889999999982 223456788877 999987542 2222222 2322 24668899999999975
No 257
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.43 E-value=4e-05 Score=72.92 Aligned_cols=25 Identities=40% Similarity=0.505 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
++.++|+|+||||||||+++|+ |..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Ls-g~~ 181 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMT-RAH 181 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHC-SSC
T ss_pred CCEEEEECCCCCcHHHHHHHHH-cCC
Confidence 7779999999999999999999 873
No 258
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.42 E-value=6.8e-05 Score=60.62 Aligned_cols=64 Identities=14% Similarity=0.027 Sum_probs=40.3
Q ss_pred ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCc-hhHHHHH-HHHHH---cCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLALA---LSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~~---l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|.. -.-...+|.+++ |+++++... ......+ .+.+. .++|+++++||+|+.+
T Consensus 52 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 52 MLEILDTAGTEQFTAMRDLYMKNGQGFAL--VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122 (167)
T ss_dssp EEEEEEECSSCSSTTHHHHHHHHCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG
T ss_pred EEEEEECCChHHHHHHHHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc
Confidence 478899999999982 122345667766 888886321 1111222 23332 3678999999999964
No 259
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.41 E-value=7e-05 Score=60.88 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=20.3
Q ss_pred ccCcEEEEEcCCCChHHHHHHHHh
Q psy15138 200 FLEIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 200 ~~g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
|.....+|+|||||||||++..|.
T Consensus 21 f~~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 21 FKEGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHH
Confidence 334468999999999999999886
No 260
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.41 E-value=5.7e-05 Score=63.04 Aligned_cols=65 Identities=15% Similarity=0.055 Sum_probs=42.6
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc---CCCcEEEEeCCCCCCh
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL---SVPVFVVVTKIDMCPP 81 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~~ 81 (320)
.+.++|+|||++|. ...-...+|.+++ |++++++.. ...+..+..+... ++|+++|+||+|+.+.
T Consensus 66 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 66 KLQIWDTAGQERFRTITSSYYRGAHGIIV--VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136 (196)
T ss_dssp EEEEEEECCSGGGCTTHHHHHTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred EEEEEECCCcHhhhhhHHHHHhhCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 47788999999998 2222445677777 999987432 1223333333333 5688899999999654
No 261
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.41 E-value=2.5e-05 Score=63.07 Aligned_cols=104 Identities=15% Similarity=0.112 Sum_probs=57.3
Q ss_pred eEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc--hhHHHHHHHHHH---cCCCcEEEEeCCCCCChhHH-HHH
Q psy15138 16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV--GMTKEHLGLALA---LSVPVFVVVTKIDMCPPNVL-QDT 87 (320)
Q Consensus 16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~---l~i~~~v~lnk~Dl~~~~~l-e~~ 87 (320)
+.++|+|||++|. .-.....+|.+++ |++++++.. ........+.+. .++|.++++||+|+.+.... .+.
T Consensus 53 ~~l~D~~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 130 (167)
T 1kao_A 53 LEILDTAGTEQFASMRDLYIKNGQGFIL--VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSE 130 (167)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHCSEEEE--EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHH
T ss_pred EEEEECCCchhhHHHHHHHhccCCEEEE--EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHH
Confidence 7789999999998 1222345577766 898886432 122222233333 36789999999998643211 111
Q ss_pred HHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHH
Q psy15138 88 LKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLI 128 (320)
Q Consensus 88 l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~ 128 (320)
..++...+ .+ ++ +.....+.+..+++...+.+.+
T Consensus 131 ~~~~~~~~---~~---~~-~~~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 131 GRALAEEW---GC---PF-METSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp HHHHHHHH---TS---CE-EEECTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh---CC---CE-EEecCCCCcCHHHHHHHHHHHH
Confidence 12222211 11 11 1134466677777777666544
No 262
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.40 E-value=0.00011 Score=62.06 Aligned_cols=64 Identities=14% Similarity=-0.029 Sum_probs=42.4
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHHHHHHH---cCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHLGLALA---LSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~---l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|. .......+|.+++ |++++.+..- ..++.+..+.. .++|+++|+||+|+..
T Consensus 58 ~~~l~Dt~G~~~~~~~~~~~~~~~d~vil--v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 58 KLQIWDTAGQERFRTITSSYYRGSHGIII--VYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127 (206)
T ss_dssp EEEEECCTTTTTTTCCCGGGGTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred EEEEEeCCChHHHHHHHHHhccCCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 47889999999998 2233456677777 9999874321 22223333332 2457889999999975
No 263
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.40 E-value=5.9e-05 Score=64.88 Aligned_cols=109 Identities=13% Similarity=0.017 Sum_probs=58.7
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHHHHHHHc---CCCcEEEEeCCCCCChhHH-HHH
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHLGLALAL---SVPVFVVVTKIDMCPPNVL-QDT 87 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~l---~i~~~v~lnk~Dl~~~~~l-e~~ 87 (320)
.+.++|+|||++|. ...-...+|.+++ |++++.+..- ..++.+..++.. ++|++||+||+|+...... .+.
T Consensus 63 ~~~i~Dt~G~~~~~~~~~~~~~~~d~vil--V~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 140 (223)
T 3cpj_B 63 KAQIWDTAGQERYRAITSAYYRGAVGALI--VYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEE 140 (223)
T ss_dssp EEEEECCTTTTTTTCCCGGGTTTCCEEEE--EEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHH
T ss_pred EEEEEECCCccchhhhHHHHhccCCEEEE--EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHH
Confidence 57889999999998 3333556777777 9998874432 222334333332 5678888999998642111 111
Q ss_pred HHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHHcCc
Q psy15138 88 LKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNGR 132 (320)
Q Consensus 88 l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~~~~ 132 (320)
..++... ..+ ++ +-....+.+.++++...+...+.+..
T Consensus 141 ~~~~~~~---~~~---~~-~~~Sa~~~~gi~~l~~~l~~~i~~~~ 178 (223)
T 3cpj_B 141 SKTFAQE---NQL---LF-TETSALNSENVDKAFEELINTIYQKV 178 (223)
T ss_dssp HHHHHHH---TTC---EE-EECCCC-CCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHH---cCC---EE-EEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 1222211 111 11 11233555667777777766655443
No 264
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.40 E-value=7.1e-05 Score=69.83 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHG 225 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G 225 (320)
| .++|+||||||||||+.+|. +
T Consensus 27 g-~~~i~G~nG~GKttll~ai~-~ 48 (359)
T 2o5v_A 27 G-VTGIYGENGAGKTNLLEAAY-L 48 (359)
T ss_dssp E-EEEEECCTTSSHHHHHHHHH-H
T ss_pred C-eEEEECCCCCChhHHHHHHH-H
Confidence 5 89999999999999999998 6
No 265
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.39 E-value=2.5e-05 Score=72.06 Aligned_cols=34 Identities=29% Similarity=0.348 Sum_probs=27.8
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcC----CCCCceeeec
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLTHGEL----DNGRGHARQK 237 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~~G~l----~~~~G~i~~~ 237 (320)
+.++|+||||+|||||+++|+ +.+ .+.+|.+...
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia-~~l~~~~~~~sg~~~~~ 89 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIA-SELQTNIHVTSGPVLVK 89 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHH-HHHTCCEEEEETTTCCS
T ss_pred CeEEEECCCCCcHHHHHHHHH-HHhCCCEEEEechHhcC
Confidence 348999999999999999999 887 5666766543
No 266
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.38 E-value=2.8e-05 Score=63.73 Aligned_cols=64 Identities=13% Similarity=0.026 Sum_probs=41.2
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHHHHHHH---cCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHLGLALA---LSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~---l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|. .......+|.+++ |++++.+..- ..+..+..++. .++|+++++||+|+.+
T Consensus 65 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 65 KLQIWDTAGQERFRAVTRSYYRGAAGALM--VYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 134 (179)
T ss_dssp EEEEEECTTGGGTCHHHHHHHHTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred EEEEEECCCChHhhhhHHHHhccCCEEEE--EEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 47888999999998 2222345677777 9999875321 11222322222 3557889999999964
No 267
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.38 E-value=4.1e-05 Score=64.17 Aligned_cols=64 Identities=9% Similarity=-0.028 Sum_probs=42.8
Q ss_pred ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc---CCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL---SVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+||+++|.. ......+|.+++ |++++++.. ...++.+..++.. ++|+++|+||+|+.+
T Consensus 73 ~~~i~Dt~G~~~~~~~~~~~~~~~d~iil--V~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 73 KFLIWDTAGQERFHSLAPMYYRGSAAAVI--VYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp EEEEEEECCSGGGGGGTHHHHTTCSEEEE--EEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEEEcCCCchhhHhhhHHhhccCCEEEE--EEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 478889999999982 222345677777 999987543 2223344333333 568889999999964
No 268
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.37 E-value=7.8e-05 Score=63.21 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHG 225 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G 225 (320)
+++|+|+|||||||+.+.|+ +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~-~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFR-E 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHH-H
T ss_pred EEEEECCCCcCHHHHHHHHH-H
Confidence 58999999999999999999 6
No 269
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.37 E-value=0.00016 Score=61.37 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=43.3
Q ss_pred ceEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCchhH--HHHHHHHHHc--CCCcEEEEeCCCCCCh
Q psy15138 15 AASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIVGMT--KEHLGLALAL--SVPVFVVVTKIDMCPP 81 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~~~t--~~~l~l~~~l--~i~~~v~lnk~Dl~~~ 81 (320)
.+.++|+|||++|..+ .....+|.+++ |++++++..-.. ...+..++.. ++|+++|.||+|+...
T Consensus 58 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~il--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 58 NLGLWDTAGQEDYSRLRPLSYRGADIFVL--AFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDD 128 (212)
T ss_dssp EEEEECCCCCCCCCC--CGGGTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred EEEEEECCCcHHHHHHHHhhccCCCEEEE--EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhC
Confidence 5788999999999822 22456777777 999886332111 1233344433 6789999999998654
No 270
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.37 E-value=0.00017 Score=59.27 Aligned_cols=64 Identities=19% Similarity=0.129 Sum_probs=41.6
Q ss_pred eEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhH--HHHHHHHHHc--CCCcEEEEeCCCCCCh
Q psy15138 16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMT--KEHLGLALAL--SVPVFVVVTKIDMCPP 81 (320)
Q Consensus 16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t--~~~l~l~~~l--~i~~~v~lnk~Dl~~~ 81 (320)
+.++|+|||++|. .-.....+|.+++ |++++++..-.. ...+..++.. ++|++++.||+|+...
T Consensus 58 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 58 LGLWDTAGQEDYNRLRPLSYRGADVFIL--AFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDD 127 (182)
T ss_dssp CEEECCCC-CTTTTTGGGGGTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred EEEEECCCChhhhhhHHhhccCCCEEEE--EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcC
Confidence 5699999999998 2233456788777 999987432111 1233333332 6789999999998654
No 271
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.37 E-value=7.3e-05 Score=63.11 Aligned_cols=108 Identities=14% Similarity=0.007 Sum_probs=58.5
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHHHHH----HHcCCCcEEEEeCCCCCChhHHH-H
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHLGLA----LALSVPVFVVVTKIDMCPPNVLQ-D 86 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~----~~l~i~~~v~lnk~Dl~~~~~le-~ 86 (320)
.+.++|+||+++|. ...-...+|.+++ |+++++...- ...+.+... ...++|+++|+||+|+.+..... +
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~ 150 (201)
T 3oes_A 73 HLHLVDTAGQDEYSILPYSFIIGVHGYVL--VYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAV 150 (201)
T ss_dssp EEEEEEECCCCTTCCCCGGGTTTCCEEEE--EEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEECCCccchHHHHHHHHhcCCEEEE--EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHH
Confidence 36789999999998 3333556787777 9998863321 111222211 12367889999999986432111 1
Q ss_pred HHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHHcC
Q psy15138 87 TLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNG 131 (320)
Q Consensus 87 ~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~~~ 131 (320)
...++...+ .+ ++ +-....+....+++...+...+.+.
T Consensus 151 ~~~~~~~~~---~~---~~-~~~Sa~~~~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 151 EGKKLAESW---GA---TF-MESSARENQLTQGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHH---TC---EE-EECCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHh---CC---eE-EEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 112222211 11 11 1133456667777776666554433
No 272
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.37 E-value=5.8e-05 Score=61.89 Aligned_cols=64 Identities=14% Similarity=0.011 Sum_probs=41.6
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchh-HHHHHH-HHHHc-CCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGM-TKEHLG-LALAL-SVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~-t~~~l~-l~~~l-~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|. .......+|.+++ |++++++..-. .++.+. +.+.. .+|.++|+||+|+.+
T Consensus 59 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 59 KLQIWDTAGQERFRTITSTYYRGTHGVIV--VYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPE 127 (181)
T ss_dssp EEEEEEETTGGGCSSCCGGGGTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGG
T ss_pred EEEEEcCCCchhhhhhHHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCch
Confidence 47788999999998 2233456677777 99998743221 122222 22222 357889999999864
No 273
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.36 E-value=6.8e-05 Score=67.12 Aligned_cols=29 Identities=28% Similarity=0.192 Sum_probs=25.3
Q ss_pred ccCcEEEEEcCCCChHHHHHHHHhcCcCCC
Q psy15138 200 FLEIRVAVVGNVDAGKSTLLGVLTHGELDN 229 (320)
Q Consensus 200 ~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~ 229 (320)
..|+.++|+||||||||||++.|+ +.+..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~-~~~~~ 56 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLA-AQIAG 56 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH-HHHHT
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHH-HHHhc
Confidence 359999999999999999999999 76653
No 274
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.35 E-value=3.1e-05 Score=62.81 Aligned_cols=64 Identities=11% Similarity=0.037 Sum_probs=41.3
Q ss_pred ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc---CCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL---SVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|.. ......+|.+++ |++++++.. ...++.+.-+... .+|++++.||+|+.+
T Consensus 56 ~~~~~D~~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 56 KFEIWDTAGQERYHSLAPMYYRGAQAAIV--VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125 (170)
T ss_dssp EEEEEEECCSGGGGGGHHHHHTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEEEeCCCcHHhhhhhHHhccCCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 477889999999982 222455677777 999987532 2223344333332 446777779999854
No 275
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.35 E-value=8.2e-05 Score=63.36 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
|..++|+||||||||||.+.|. ..+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~-~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVL-SEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH-HHC
T ss_pred CCEEEEECCCCCCHHHHHHHHH-HhC
Confidence 6779999999999999999998 555
No 276
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.34 E-value=7.6e-05 Score=63.70 Aligned_cols=36 Identities=22% Similarity=0.050 Sum_probs=28.0
Q ss_pred CccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138 199 DFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK 237 (320)
Q Consensus 199 ~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~ 237 (320)
...|+.++|+||||||||||++.|+ + .++.+.+.+.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~-~--~~~~~v~~i~ 52 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTG-L--LSGKKVAYVD 52 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHH-H--HHCSEEEEEE
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHH-H--HcCCcEEEEE
Confidence 3359999999999999999999999 7 4444444443
No 277
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.34 E-value=2.3e-05 Score=64.66 Aligned_cols=64 Identities=13% Similarity=0.011 Sum_probs=41.1
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHH-HHHHH---cCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHL-GLALA---LSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l-~l~~~---l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|. .-.....+|.+++ |+++++...- .....+ .+... .++|+++|+||+|+.+
T Consensus 67 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 67 QIDILDTAGQEDYAAIRDNYFRSGEGFLC--VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 137 (187)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHHCSEEEE--EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG
T ss_pred EEEEEECCCCcccHHHHHHHhccCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 47789999999988 2222345677777 9998864321 112222 22232 2678999999999864
No 278
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.34 E-value=5.9e-05 Score=68.47 Aligned_cols=38 Identities=16% Similarity=-0.065 Sum_probs=33.8
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeeccc
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLF 239 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~~ 239 (320)
.|++++++|+||+||||+++.|+ +.+.+..|.+.+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la-~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLA-LYYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHH-HHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHH-HHHHHcCCeEEEecC
Confidence 58899999999999999999999 999888888877543
No 279
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.34 E-value=8.4e-05 Score=60.10 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=41.6
Q ss_pred ceEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCc-hhHHHHHHHHHH--cCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIV-GMTKEHLGLALA--LSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~--l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+||+++|..+ .-...+|.+++ |++++.+.. ......+..+.. .++|.++|+||+|+.+
T Consensus 55 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 55 RLMLWDTAGQEEFDAITKAYYRGAQACVL--VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLD 123 (168)
T ss_dssp EEEEECCTTGGGTTCCCHHHHTTCCEEEE--EEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGG
T ss_pred EEEEEcCCCcHhHHHHHHHHhcCCCEEEE--EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCc
Confidence 5788899999998822 22345677777 999887432 122223322222 3679999999999864
No 280
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.33 E-value=8e-05 Score=61.59 Aligned_cols=64 Identities=14% Similarity=0.037 Sum_probs=42.9
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHHHHHHH---cCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHLGLALA---LSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~---l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|. .......+|.+++ |++++.+..- ..+..+..++. .++|+++++||+|+.+
T Consensus 60 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 60 KLQIWDTAGQERFRSVTRSYYRGAAGALL--VYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 129 (186)
T ss_dssp EEEEEEECCSGGGHHHHHTTSTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEEEeCCCcHHHHHHHHHHHhcCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 57789999999998 3444567788777 9999874321 11223322222 3567889999999853
No 281
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.33 E-value=0.00012 Score=61.74 Aligned_cols=64 Identities=19% Similarity=0.177 Sum_probs=38.7
Q ss_pred ceEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCc-hhHHHHH-HHHH---HcCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIV-GMTKEHL-GLAL---ALSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~---~l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|..+ .-...+|.+++ |++++++.. ....+.+ .+.+ ..++|.+++.||+|+..
T Consensus 70 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 70 TFTTFDLGGHIQARRVWKNYLPAINGIVF--LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp EEEEEEECC----CCGGGGGGGGCSEEEE--EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred EEEEEECCCcHhhHHHHHHHHhcCCEEEE--EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 4678899999999832 22446777777 999987532 2222222 2222 24678999999999975
No 282
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.32 E-value=0.00024 Score=59.70 Aligned_cols=64 Identities=16% Similarity=0.019 Sum_probs=43.5
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHH---cCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALA---LSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~---l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|. ...-...+|.+++ |++++.+.. ...++.+..+.. .++|+++|+||+|+..
T Consensus 58 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 58 KLQIWDTAGLERYRTITTAYYRGAMGFIL--MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp EEEEEEECCSGGGHHHHHTTGGGCSEEEE--EEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred EEEEEECCCchhhcchHHHhhcCCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 47888999999998 3344556777777 999987432 122233333333 2568889999999964
No 283
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.32 E-value=0.00013 Score=60.18 Aligned_cols=25 Identities=40% Similarity=0.688 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
|.+++|+|++|+|||||++.|. +..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~-~~~ 28 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALA-GRE 28 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH-TSC
T ss_pred CCEEEEECCCCCCHHHHHHHHh-CCC
Confidence 6789999999999999999999 754
No 284
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.31 E-value=0.00013 Score=60.60 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=42.8
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHH-HHHH---HcCCCcEEEEeCCCCCChh
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLAL---ALSVPVFVVVTKIDMCPPN 82 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~---~l~i~~~v~lnk~Dl~~~~ 82 (320)
.+.++|+||+++|. .......+|.+++ |++++++.. ....+.+ .+.+ ..++|.+++.||+|+....
T Consensus 61 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 133 (181)
T 1fzq_A 61 KLNVWDIGGQRKIRPYWRSYFENTDILIY--VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133 (181)
T ss_dssp EEEEEECSSCGGGHHHHHHHHTTCSEEEE--EEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred EEEEEECCCCHHHHHHHHHHhCCCCEEEE--EEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence 47788999999997 2222345677777 999887432 1222233 2322 2356888999999997543
No 285
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.31 E-value=0.00016 Score=60.19 Aligned_cols=107 Identities=13% Similarity=-0.014 Sum_probs=58.4
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHHHHHHH----cCCCcEEEEeCCCCCChhHHHHH
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHLGLALA----LSVPVFVVVTKIDMCPPNVLQDT 87 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~----l~i~~~v~lnk~Dl~~~~~le~~ 87 (320)
.+.++|+|||++|. ...-...+|.+++ |++++.+..- ..+..+.-... ..+|+++|+||+|+.......+.
T Consensus 65 ~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 142 (195)
T 1x3s_A 65 KLAIWDTAGQERFRTLTPSYYRGAQGVIL--VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNE 142 (195)
T ss_dssp EEEEEEECSSGGGCCSHHHHHTTCCEEEE--EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHH
T ss_pred EEEEEeCCCchhhhhhhHHHhccCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHH
Confidence 37788999999998 2222345677777 9999874321 12223322222 24577889999999543211111
Q ss_pred HHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHHHHcC
Q psy15138 88 LKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSLIDNG 131 (320)
Q Consensus 88 l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~~~~~ 131 (320)
..++.. ...+ .+. ....+.+..+++...+.+.+.+.
T Consensus 143 ~~~~~~---~~~~-----~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 143 GLKFAR---KHSM-----LFIEASAKTCDGVQCAFEELVEKIIQT 179 (195)
T ss_dssp HHHHHH---HTTC-----EEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred HHHHHH---HcCC-----EEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence 122221 1111 111 23355566777777776665543
No 286
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.31 E-value=0.00013 Score=76.87 Aligned_cols=25 Identities=40% Similarity=0.385 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELD 228 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~ 228 (320)
|++++|+||||||||||||+| |++.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i--Gl~~ 813 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA--GLLA 813 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH--HHHH
T ss_pred CcEEEEECCCCCChHHHHHHH--HHHH
Confidence 689999999999999999998 4443
No 287
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.30 E-value=5.1e-05 Score=61.25 Aligned_cols=64 Identities=13% Similarity=0.040 Sum_probs=38.2
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHH-HHHHH---cCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLALA---LSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~~---l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|. .-.-...+|.+++ |+++++... ....+.+ .+... .++|.++++||+|+.+
T Consensus 53 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 53 QIDILDTAGQEDYAAIRDNYFRSGEGFLC--VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123 (168)
T ss_dssp EEEEEECCC---CHHHHHHHHHHCSEEEE--EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred EEEEEECCCcchhHHHHHHHhhcCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc
Confidence 47789999999988 2222345677777 999886432 1122222 23332 2578999999999864
No 288
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.30 E-value=0.00017 Score=58.90 Aligned_cols=23 Identities=48% Similarity=0.800 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
+++|+|++|+|||||++.+. |..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~-~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT-GEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH-CCS
T ss_pred EEEEECCCCCCHHHHHHHHh-CCC
Confidence 58999999999999999999 754
No 289
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.29 E-value=0.00027 Score=62.25 Aligned_cols=65 Identities=14% Similarity=0.021 Sum_probs=45.4
Q ss_pred CceEEEeCCCcchhhc-------------cCCCCccchhhhccceecCCCCchhHHHHHHHHHHc-----CCCcEEEEe-
Q psy15138 14 NAASVFETRIHERDDD-------------LPEASPADHSMLQSKVGANAGIVGMTKEHLGLALAL-----SVPVFVVVT- 74 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~~-------------~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l-----~i~~~v~ln- 74 (320)
..+.|+|+|||.++.. ......+|.+++ |++++. +.++....+..+... ..|+++++|
T Consensus 71 ~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~--V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~n 147 (260)
T 2xtp_A 71 REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLL--VTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTH 147 (260)
T ss_dssp EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEE--EEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEE--EEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEc
Confidence 3588999999988641 112456788888 999985 666666555555444 568888887
Q ss_pred CCCCCCh
Q psy15138 75 KIDMCPP 81 (320)
Q Consensus 75 k~Dl~~~ 81 (320)
|+|+...
T Consensus 148 K~Dl~~~ 154 (260)
T 2xtp_A 148 KEDLNGG 154 (260)
T ss_dssp GGGGTTC
T ss_pred ccccCCc
Confidence 9999753
No 290
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.28 E-value=5.4e-05 Score=68.56 Aligned_cols=27 Identities=19% Similarity=0.106 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDN 229 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~ 229 (320)
+.+++|+||||||||||++.|. +.+.+
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~-~~l~~ 57 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIY-NHLME 57 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH-HHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH-HHhhh
Confidence 5679999999999999999999 88765
No 291
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.28 E-value=0.00012 Score=64.37 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=26.7
Q ss_pred EEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138 205 VAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL 238 (320)
Q Consensus 205 v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~ 238 (320)
++|+||||+|||||+++|+ +.+. .|.+.+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~-~~~~--~~~i~~~~ 82 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVA-GEAR--VPFITASG 82 (254)
T ss_dssp EEEECCTTSSHHHHHHHHH-HHTT--CCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHH-HHhC--CCEEEeeH
Confidence 8999999999999999999 8775 67777653
No 292
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.27 E-value=0.00013 Score=60.60 Aligned_cols=23 Identities=39% Similarity=0.599 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
+++|+|++|+|||||++.+. +..
T Consensus 4 kv~ivG~~gvGKStLl~~l~-~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLM-KTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHT-CC-
T ss_pred EEEEECCCCCCHHHHHHHHh-cCC
Confidence 58999999999999999999 753
No 293
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.26 E-value=5.6e-05 Score=61.97 Aligned_cols=64 Identities=14% Similarity=0.100 Sum_probs=40.4
Q ss_pred ceEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCc-hhHHHHH-HHHH---HcCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIV-GMTKEHL-GLAL---ALSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~---~l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|..+ .-...+|.+++ |+++++... ....+.+ .+.+ ..++|+++|+||+|+.+
T Consensus 58 ~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 58 RLDILDTAGQEEFGAMREQYMRAGHGFLL--VFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128 (181)
T ss_dssp EEEEEECCCTTTTSCCHHHHHHHCSEEEE--EEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred EEEEEECCCchhhHHHHHHHHhhCCEEEE--EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 4778999999999722 11345677766 888886321 1111222 2323 23668999999999865
No 294
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.26 E-value=7.2e-05 Score=67.02 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=59.7
Q ss_pred CCceEEEeCCCcchhhccCC--------------CCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCC
Q psy15138 13 ENAASVFETRIHERDDDLPE--------------ASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDM 78 (320)
Q Consensus 13 ~~~~~~~d~pgh~~~~~~~~--------------~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl 78 (320)
...+.++|+||+.+|.-+.. ...+|.+++ |+++... .........+..+++|+++|+||+|+
T Consensus 49 ~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~--VvD~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl 124 (274)
T 3i8s_A 49 DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLIN--VVDASNL--ERNLYLTLQLLELGIPCIVALNMLDI 124 (274)
T ss_dssp SCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEE--EEEGGGH--HHHHHHHHHHHHHTCCEEEEEECHHH
T ss_pred CCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEE--EecCCCh--HHHHHHHHHHHhcCCCEEEEEECccc
Confidence 34688999999999872211 146788877 9998862 22222334445568999999999998
Q ss_pred CChhHHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHH
Q psy15138 79 CPPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKS 126 (320)
Q Consensus 79 ~~~~~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~ 126 (320)
.....++...+++.+.+ +|.- +-.+..+.++++++...+.+
T Consensus 125 ~~~~~~~~~~~~l~~~l---g~~~----i~~SA~~g~gi~el~~~i~~ 165 (274)
T 3i8s_A 125 AEKQNIRIEIDALSARL---GCPV----IPLVSTRGRGIEALKLAIDR 165 (274)
T ss_dssp HHHTTEEECHHHHHHHH---TSCE----EECCCGGGHHHHHHHHHHHT
T ss_pred hhhhhHHHHHHHHHHhc---CCCE----EEEEcCCCCCHHHHHHHHHH
Confidence 64322211223333322 1211 11334566777777766544
No 295
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.26 E-value=0.00017 Score=68.26 Aligned_cols=43 Identities=16% Similarity=0.085 Sum_probs=31.8
Q ss_pred cccCCccCcEEEEEcCCCChHHHHHH--HHhcCcCCCCCc-----eeeecc
Q psy15138 195 VESQDFLEIRVAVVGNVDAGKSTLLG--VLTHGELDNGRG-----HARQKL 238 (320)
Q Consensus 195 l~~~~~~g~~v~ivGpnGsGKSTLl~--~l~~G~l~~~~G-----~i~~~~ 238 (320)
+..+...|+.++|+||||||||||++ ++. +..++..| .+++..
T Consensus 171 LgGGI~~Gei~~I~G~sGsGKTTLl~~la~~-~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 171 LGGGVETGSITELFGEFRTGKSQLCHTLAVT-CQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp TTTSEETTSEEEEEESTTSSHHHHHHHHHHH-TTSCGGGTCCSSEEEEEES
T ss_pred hcCCcCCCcEEEEEcCCCCChHHHHHHHHHH-hccCcccCCCCCcEEEEeC
Confidence 44455569999999999999999999 445 77766433 555553
No 296
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.26 E-value=5.5e-05 Score=64.80 Aligned_cols=35 Identities=29% Similarity=0.274 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCc--eeeec
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRG--HARQK 237 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G--~i~~~ 237 (320)
|..++|+|++||||||+.+.|. +.+.|..| .+.++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~-~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELE-HQLVRDRRVHAYRLD 61 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH-HHHHHHHCCCEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHH-HHhccccCCcEEEEC
Confidence 6779999999999999999999 87776666 44443
No 297
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.26 E-value=4.3e-05 Score=63.86 Aligned_cols=64 Identities=17% Similarity=0.119 Sum_probs=41.8
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc---CCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL---SVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+||+++|. .......+|.+++ |++++.+.. ...++.+..+... ++|+++|+||+|+..
T Consensus 75 ~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~--v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 75 KAQIWDTAGLERYRAITSAYYRGAVGALL--VFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ 144 (193)
T ss_dssp EEEEEEESCCCTTCTTHHHHHTTCCEEEE--EEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG
T ss_pred EEEEEeCCCchhhhhhhHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc
Confidence 36788999999997 2222345677777 999987432 1223344333332 457889999999964
No 298
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.25 E-value=0.00034 Score=61.53 Aligned_cols=111 Identities=17% Similarity=0.215 Sum_probs=64.0
Q ss_pred CceEEEeCCCc--------chhh-c-----cCCCCccchhhhccceecCCCCchhHHHHHHHHHHc------CCCcEEEE
Q psy15138 14 NAASVFETRIH--------ERDD-D-----LPEASPADHSMLQSKVGANAGIVGMTKEHLGLALAL------SVPVFVVV 73 (320)
Q Consensus 14 ~~~~~~d~pgh--------~~~~-~-----~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l------~i~~~v~l 73 (320)
..+.|+|+||. ++|. . .....++|.+++ |++++. ......+-+..++.+ +.|++|+.
T Consensus 70 ~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~--V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~ 146 (247)
T 3lxw_A 70 CHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLL--VTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFT 146 (247)
T ss_dssp EEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEE--EEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred cEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEE--EEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEE
Confidence 34789999997 5554 1 112367888877 999874 555555555555443 56888889
Q ss_pred eCCCCCChhHHHHHHH-----HHHHhhcCCCccccCccccccC---C---chhHHHHHHHHHHHHHHcCcc
Q psy15138 74 TKIDMCPPNVLQDTLK-----LLVRILKSPGCRKVPVMNCLIS---P---TEEQFDLLQKKIKSLIDNGRG 133 (320)
Q Consensus 74 nk~Dl~~~~~le~~l~-----~~~~~l~~~~~~~i~~kl~~~~---g---nyd~~~~l~~q~~~~~~~~~~ 133 (320)
||+|+... .+++++. .+...+.. |.. +...++ . +.++..+|...+...+.+..+
T Consensus 147 nK~Dl~~~-~~~~~l~~~~~~~l~~l~~~--~g~---~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~ 211 (247)
T 3lxw_A 147 RKEDLAGG-SLHDYVSNTENRALRELVAE--CGG---RVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKG 211 (247)
T ss_dssp CGGGGTTC-CHHHHHHHCCCHHHHHHHHH--TTT---CEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred chHhcCCC-CHHHHHhhcccHHHHHHHHH--cCC---eEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCC
Confidence 99999653 2344442 23443322 211 111222 1 246677777777666655443
No 299
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.25 E-value=0.00014 Score=61.26 Aligned_cols=65 Identities=15% Similarity=0.055 Sum_probs=40.5
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc---CCCcEEEEeCCCCCCh
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL---SVPVFVVVTKIDMCPP 81 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~~ 81 (320)
.+.++|+||+++|. .......+|.+++ |++++++.. ...++.+..+... ++|.++|+||+|+.+.
T Consensus 83 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 83 KLQIWDTAGQERFRTITSSYYRGAHGIIV--VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp EEEEECCTTCTTCCCCSCC--CCCSEEEE--CC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred EEEEEECCCcHhHHHHHHHHhhcCCEEEE--EEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCcc
Confidence 47888999999998 3334567788877 999987443 1223333333333 5678888899999643
No 300
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.24 E-value=0.00039 Score=61.57 Aligned_cols=72 Identities=11% Similarity=0.102 Sum_probs=44.5
Q ss_pred ceEEEeCCCcchhh------------ccCCCCccchhhhccceecCCC-CchhHHHHHH-HHHHcC----CCcEEEEeCC
Q psy15138 15 AASVFETRIHERDD------------DLPEASPADHSMLQSKVGANAG-IVGMTKEHLG-LALALS----VPVFVVVTKI 76 (320)
Q Consensus 15 ~~~~~d~pgh~~~~------------~~~~~~~~d~~~l~~vv~a~~g-~~~~t~~~l~-l~~~l~----i~~~v~lnk~ 76 (320)
.+.++|+|||++|. .+. ...+|.+++ |++.+.. .....++-+. +....+ .|.++|+||+
T Consensus 85 ~l~liDTpG~~~~~~~~~~~~~~i~~~l~-~~~~~~il~--V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~ 161 (262)
T 3def_A 85 TINIIDTPGLVEAGYVNHQALELIKGFLV-NRTIDVLLY--VDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161 (262)
T ss_dssp EEEEEECCCSEETTEECHHHHHHHHHHTT-TCEECEEEE--EEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECT
T ss_pred eEEEEECCCCCCcccchHHHHHHHHHHHh-cCCCCEEEE--EEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCc
Confidence 57899999999885 121 346788777 8888763 3333334443 333333 2778889999
Q ss_pred CCCCh--hHHHHHHH
Q psy15138 77 DMCPP--NVLQDTLK 89 (320)
Q Consensus 77 Dl~~~--~~le~~l~ 89 (320)
|+.++ ..++++++
T Consensus 162 Dl~~~~~~~~e~~~~ 176 (262)
T 3def_A 162 QFSPPDELSYETFSS 176 (262)
T ss_dssp TCCCSTTCCHHHHHH
T ss_pred ccCCCCCccHHHHHH
Confidence 99633 33444443
No 301
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.24 E-value=0.00014 Score=65.00 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=27.0
Q ss_pred EEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138 205 VAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL 238 (320)
Q Consensus 205 v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~ 238 (320)
++|+||||+|||||+++|+ +.+. .|.+.+..
T Consensus 76 vll~Gp~GtGKTtl~~~i~-~~~~--~~~i~~~~ 106 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVA-GEAR--VPFITASG 106 (278)
T ss_dssp EEEECCTTSSHHHHHHHHH-HHTT--CCEEEEEH
T ss_pred EEEECCCcChHHHHHHHHH-HHcC--CCEEEecH
Confidence 8999999999999999999 8875 67777653
No 302
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.23 E-value=9.6e-05 Score=61.80 Aligned_cols=32 Identities=25% Similarity=0.216 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCcee
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHA 234 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i 234 (320)
|..++|+|++||||||+.+.|+ ..+.+..+.+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~-~~l~~~~~~~ 44 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLA-DLLQKEGYRV 44 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH-HHHHHTTCCE
T ss_pred CcEEEEEcCCCCCHHHHHHHHH-HHHHhcCCeE
Confidence 6779999999999999999999 7776555544
No 303
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.23 E-value=0.0001 Score=72.15 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=28.5
Q ss_pred ccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCce
Q psy15138 200 FLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGH 233 (320)
Q Consensus 200 ~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~ 233 (320)
..|+.++|+||||||||||++.++ |...+. |.
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~-g~~~~~-G~ 310 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFV-ENACAN-KE 310 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHH-HHHHTT-TC
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH-HHHHhC-CC
Confidence 349999999999999999999999 998875 54
No 304
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.22 E-value=0.00016 Score=60.42 Aligned_cols=64 Identities=13% Similarity=0.038 Sum_probs=42.3
Q ss_pred ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc---CCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL---SVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l---~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|.. ..-...+|.+++ |++++++.. ...++.+..++.. ++|+++|+||+|+.+
T Consensus 71 ~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~--v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 71 KLQIWDTAGQESFRSITRSYYRGAAGALL--VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp EEEEECCTTGGGTSCCCHHHHTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred EEEEEECCCchhhhhhHHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC
Confidence 478889999999982 222445677777 999987432 1223344333332 568889999999964
No 305
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.21 E-value=0.00019 Score=61.97 Aligned_cols=66 Identities=12% Similarity=0.064 Sum_probs=41.0
Q ss_pred CceEEEeCCCc------ch----hhcc-CCCCccchhhhccceecCCCCchh---HHHHHHHHHHc--CCCcEEEEeCCC
Q psy15138 14 NAASVFETRIH------ER----DDDL-PEASPADHSMLQSKVGANAGIVGM---TKEHLGLALAL--SVPVFVVVTKID 77 (320)
Q Consensus 14 ~~~~~~d~pgh------~~----~~~~-~~~~~~d~~~l~~vv~a~~g~~~~---t~~~l~l~~~l--~i~~~v~lnk~D 77 (320)
..+.++|+||+ ++ |..+ .-...+|.+++ |++++++..-. ..+.+..++.. ++|+++|+||+|
T Consensus 76 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~D 153 (228)
T 2qu8_A 76 NKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILF--IIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKID 153 (228)
T ss_dssp EEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEE--EEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGG
T ss_pred CeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEE--EEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcc
Confidence 35788999999 65 3311 11344566666 99998764422 12233333333 679999999999
Q ss_pred CCCh
Q psy15138 78 MCPP 81 (320)
Q Consensus 78 l~~~ 81 (320)
+.+.
T Consensus 154 l~~~ 157 (228)
T 2qu8_A 154 KCNM 157 (228)
T ss_dssp GCC-
T ss_pred cCCc
Confidence 9754
No 306
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.20 E-value=0.00028 Score=59.58 Aligned_cols=64 Identities=11% Similarity=0.049 Sum_probs=41.6
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHH---cCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALA---LSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~---l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+||+++|. ...-...+|.+++ |++++++.. ...++.+..++. .++|+++|.||+|+..
T Consensus 79 ~l~i~Dt~G~~~~~~~~~~~~~~~d~iil--v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 79 KLQIWDTAGQERFRTITQSYYRSANGAIL--AYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp EEEEECCTTCGGGHHHHHHHHTTCSEEEE--EEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred EEEEEECCCcHhHHHHHHHHHhhCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence 57889999999998 2222345677777 999886322 122233333332 3467888899999964
No 307
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.20 E-value=0.00012 Score=61.30 Aligned_cols=64 Identities=13% Similarity=0.042 Sum_probs=42.9
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHHHHHHHc---CCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHLGLALAL---SVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~l---~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+||+++|. .......+|.+++ |++++++..- ..++.+..++.. ++|+++|+||+|+.+
T Consensus 76 ~l~l~Dt~G~~~~~~~~~~~~~~~d~iil--V~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 76 RLQIWDTAGQERFNSITSAYYRSAKGIIL--VYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp EEEEEEECCSGGGHHHHHHHHHHCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEEEeCCCcHHHHHHHHHHhcCCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 47888999999998 2222456677777 9999874422 222333444443 567889999999864
No 308
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.19 E-value=0.00032 Score=56.64 Aligned_cols=64 Identities=16% Similarity=0.091 Sum_probs=32.7
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHH-HHHHH---cCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHL-GLALA---LSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l-~l~~~---l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+||+++|. .-.-...+|.+++ |++.++... ....+.+ .+.+. -++|.++|.||+|+.+
T Consensus 50 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 50 SLMVYDIWEQDGGRWLPGHCMAMGDAYVI--VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp EEEEEECC---------------CCEEEE--EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred EEEEEECCCCccchhhhhhhhhhCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 36788999999998 2223456777777 888886321 1112222 33332 3578899999999964
No 309
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.19 E-value=0.00026 Score=65.80 Aligned_cols=41 Identities=29% Similarity=0.323 Sum_probs=29.5
Q ss_pred ccccCCccCcEEEEEcCCCChHHHHHHHHhcC--cCCCCCceee
Q psy15138 194 RVESQDFLEIRVAVVGNVDAGKSTLLGVLTHG--ELDNGRGHAR 235 (320)
Q Consensus 194 ~l~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G--~l~~~~G~i~ 235 (320)
.++.+++.--+++|+|++|||||||++.|. | .++.+.|.+.
T Consensus 26 ~l~~i~~~lp~I~vvG~~~sGKSSLln~l~-g~~~lp~~~~~vT 68 (360)
T 3t34_A 26 ALPTLWDSLPAIAVVGGQSSGKSSVLESIV-GKDFLPRGSGIVT 68 (360)
T ss_dssp CC----CCCCEEEEECBTTSSHHHHHHHHH-TSCCSCCCSSSCC
T ss_pred ccccccccCCEEEEECCCCCcHHHHHHHHh-CCCcCCCCCCccc
Confidence 344444443479999999999999999999 8 5677777653
No 310
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.18 E-value=0.00012 Score=67.29 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=26.3
Q ss_pred EEEEcCCCChHHHHHHHHhcC-cCCCCCceeeecc
Q psy15138 205 VAVVGNVDAGKSTLLGVLTHG-ELDNGRGHARQKL 238 (320)
Q Consensus 205 v~ivGpnGsGKSTLl~~l~~G-~l~~~~G~i~~~~ 238 (320)
+.|.||||+|||||++.|+ + ++.|+.|.+.+++
T Consensus 39 ~ll~Gp~G~GKTtl~~~la-~~l~~~~~g~i~~~~ 72 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALL-ESIFGPGVYRLKIDV 72 (354)
T ss_dssp EEEECSTTSSHHHHHHTHH-HHHSCTTCCC-----
T ss_pred EEEECCCCCCHHHHHHHHH-HHHcCCCCCeEEecc
Confidence 7999999999999999999 8 7888889887653
No 311
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.16 E-value=0.00015 Score=67.98 Aligned_cols=32 Identities=28% Similarity=0.272 Sum_probs=27.1
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeee
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQ 236 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~ 236 (320)
.|+.++|+||||||||||+++|+ |.+ .|.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~-~~~---~g~~~~ 199 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALL-ELC---GGKALN 199 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHH-HHH---CCEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHH-hhc---CCcEEE
Confidence 38999999999999999999999 754 566554
No 312
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.16 E-value=0.00011 Score=67.91 Aligned_cols=35 Identities=29% Similarity=0.242 Sum_probs=29.4
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeee
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQ 236 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~ 236 (320)
.+.+++|+|++|+|||||++.|+ +.+.+..|.+.+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~-~~~~~~~~~v~v 89 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFG-MLLIREGLKVAV 89 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHH-HHHHHTTCCEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHH-HHHHhcCCeEEE
Confidence 47889999999999999999999 887766665544
No 313
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.15 E-value=0.00017 Score=67.36 Aligned_cols=20 Identities=35% Similarity=0.473 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
.++|+||||||||||+.+|+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 67899999999999999987
No 314
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.14 E-value=0.00018 Score=60.96 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
..++|+|++||||||+.+.|+ +.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~-~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIA-EAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHH-HHH
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHh
Confidence 358999999999999999998 554
No 315
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.13 E-value=0.00028 Score=61.45 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=23.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCCCCCc
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGELDNGRG 232 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~l~~~~G 232 (320)
+++|+|++|+|||||++.|. |...+.++
T Consensus 31 ~i~lvG~~g~GKStlin~l~-g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSIL-GRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHH-TSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHc-CCCcCccC
Confidence 58999999999999999999 87665554
No 316
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.13 E-value=0.0008 Score=65.06 Aligned_cols=104 Identities=12% Similarity=0.058 Sum_probs=58.7
Q ss_pred ceEEEeCCCcchhh-c---------cCCCCccchhhhccceecCCCCchh-HHHHHHHHHHc-CCCcEEEEeCCCCCChh
Q psy15138 15 AASVFETRIHERDD-D---------LPEASPADHSMLQSKVGANAGIVGM-TKEHLGLALAL-SVPVFVVVTKIDMCPPN 82 (320)
Q Consensus 15 ~~~~~d~pgh~~~~-~---------~~~~~~~d~~~l~~vv~a~~g~~~~-t~~~l~l~~~l-~i~~~v~lnk~Dl~~~~ 82 (320)
.+.++|+||+++|. . ......+|.+++ |++++.+.... ..+...+.+.+ ++|.++|+||+|+.+..
T Consensus 282 ~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~--VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~ 359 (476)
T 3gee_A 282 MFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILY--LLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANA 359 (476)
T ss_dssp EEEEEC--------------------CCCSSCSEEEE--EEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTT
T ss_pred EEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEE--EEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCcc
Confidence 47889999998875 1 234677888888 99999887652 22333344433 46889999999998665
Q ss_pred HHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHH
Q psy15138 83 VLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLID 129 (320)
Q Consensus 83 ~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~ 129 (320)
..+. +++.+. .+ .+ -+..+..+.+.++++...+.+.+.
T Consensus 360 ~~~~--~~l~~~----~~--~~-~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 360 DALI--RAIADG----TG--TE-VIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp HHHH--HHHHHH----HT--SC-EEECBTTTTBSHHHHHHHHTHHHH
T ss_pred chhH--HHHHhc----CC--Cc-eEEEEECCCCCHHHHHHHHHHHHh
Confidence 4432 233332 00 11 122345666778888888777665
No 317
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.13 E-value=0.00017 Score=60.31 Aligned_cols=64 Identities=13% Similarity=0.037 Sum_probs=41.1
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHH-HHHH----cCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLG-LALA----LSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~-l~~~----l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|. .-.....+|.+++ |++++.+.. ...+..+. +... -++|+++|+||+|+..
T Consensus 57 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 57 TLQITDTTGSHQFPAMQRLSISKGHAFIL--VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp EEEEEECCGGGSCHHHHHHHHHHCSEEEE--EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred EEEEEeCCChHHhHHHHHHhhccCCEEEE--EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 47789999999988 2222345677777 888886322 11112222 3332 2568999999999975
No 318
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.12 E-value=0.00024 Score=58.79 Aligned_cols=23 Identities=48% Similarity=0.833 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLTHGE 226 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~~G~ 226 (320)
-+++|+|++|+|||||++.+. +.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~-~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALT-GE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHH-TT
T ss_pred CEEEEECCCCCCHHHHHHHHh-CC
Confidence 358999999999999999999 64
No 319
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.19 E-value=7.1e-05 Score=63.23 Aligned_cols=64 Identities=14% Similarity=0.088 Sum_probs=43.5
Q ss_pred eEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch--hHHHHHHHHHHc--CCCcEEEEeCCCCCCh
Q psy15138 16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG--MTKEHLGLALAL--SVPVFVVVTKIDMCPP 81 (320)
Q Consensus 16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~--~t~~~l~l~~~l--~i~~~v~lnk~Dl~~~ 81 (320)
+.++|+||+++|. .-.....+|.+++ |++++++..- .....+..++.. ++|+++|.||+|+.+.
T Consensus 80 l~i~Dt~G~~~~~~~~~~~~~~~d~iil--v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 80 LGLWDTAGQEDYDRLRPLSYPQTDVFLI--CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
Confidence 5588999999998 2233557788877 9998765422 211333333333 6789999999999754
No 320
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.11 E-value=0.00021 Score=57.80 Aligned_cols=64 Identities=13% Similarity=0.006 Sum_probs=41.5
Q ss_pred ceEEEeCCCcchhhccC--CCCccchhhhccceecCCCCch-hHHHHHHHHHHcC---CCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDDDLP--EASPADHSMLQSKVGANAGIVG-MTKEHLGLALALS---VPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~~~--~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~l~---i~~~v~lnk~Dl~~ 80 (320)
.+.++|+||+++|..+. -...+|.+++ |++++++..- ..++.+..++... +|++++.||+|+.+
T Consensus 56 ~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 56 KFLIWDTAGLERFRALAPMYYRGSAAAII--VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp EEEEEEECCSGGGGGGTHHHHTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred EEEEEcCCCchhhhcccHhhCcCCCEEEE--EEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence 47789999999998222 2345677777 9999875432 2233444444443 35677779999964
No 321
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.10 E-value=0.00025 Score=57.96 Aligned_cols=22 Identities=27% Similarity=0.156 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGE 226 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~ 226 (320)
.++|+|++||||||+.+.|+ ..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~-~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS-KE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHHH-HH
Confidence 48999999999999999998 44
No 322
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.10 E-value=0.00023 Score=59.21 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHh
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
|..++|+|++||||||+.+.|+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5679999999999999999998
No 323
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.08 E-value=0.00027 Score=66.69 Aligned_cols=35 Identities=29% Similarity=0.523 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCc-----------CCCCCceeeec
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGE-----------LDNGRGHARQK 237 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~-----------l~~~~G~i~~~ 237 (320)
+.+++|+|++|+|||||++.|+ |. ..|..|.+.+.
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Lt-g~~~~~~~~p~tTi~p~~g~v~v~ 67 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLT-NSQASAENFPFCTIDPNESRVPVP 67 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHH-C-------------CCSEEEEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHH-CCCccccCCCccccCceeEEEEEC
Confidence 6679999999999999999999 87 55666766543
No 324
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.08 E-value=7.3e-05 Score=60.64 Aligned_cols=64 Identities=16% Similarity=0.097 Sum_probs=41.0
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHH-HHHH----cCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLG-LALA----LSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~-l~~~----l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|. .......+|.+++ |++++.+.. ...++.+. +.+. -++|+++++||+|+.+
T Consensus 52 ~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 52 TLQITDTTGSHQFPAMQRLSISKGHAFIL--VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123 (172)
T ss_dssp EEEEEECCSCSSCHHHHHHHHHHCSEEEE--EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred EEEEEECCCchhhHHHHHHhcccCCEEEE--EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence 36889999999988 2222345677777 999886332 12222332 3332 2579999999999864
No 325
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.07 E-value=0.00018 Score=65.88 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
.++|+||||||||||+.+|. .++
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~-~ll 48 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK-WVF 48 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH-HTS
T ss_pred cEEEECCCCCcHHHHHHHHH-HHh
Confidence 79999999999999999998 665
No 326
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.07 E-value=0.0002 Score=57.85 Aligned_cols=64 Identities=14% Similarity=0.064 Sum_probs=41.5
Q ss_pred ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCch-hHHHHH-HHHHHc--CCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIVG-MTKEHL-GLALAL--SVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l-~l~~~l--~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|.. ......+|.+++ |++++++..- ..++.+ .+.... ++|+++++||+|+..
T Consensus 53 ~~~~~D~~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1ek0_A 53 KFEIWDTAGQERFASLAPXYYRNAQAALV--VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122 (170)
T ss_dssp EEEEEEECCSGGGGGGHHHHHTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEEEECCCChhhhhhhhhhhccCcEEEE--EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 478899999999982 222345677777 9999874321 222223 233332 567888899999864
No 327
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.07 E-value=0.00027 Score=60.43 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=20.1
Q ss_pred ccCcEEEEEcCCCChHHHHHHHHh
Q psy15138 200 FLEIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 200 ~~g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
|.....+|+|||||||||++..|.
T Consensus 21 f~~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 21 FKEGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHH
T ss_pred eCCCeEEEEcCCCCCHHHHHHHHH
Confidence 334568999999999999999875
No 328
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.06 E-value=0.0004 Score=58.87 Aligned_cols=64 Identities=19% Similarity=0.088 Sum_probs=42.7
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHHHHHHHc---CCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHLGLALAL---SVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~l---~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+||+++|. .......+|.+++ |++++.+..- ..++.+..++.. ++|+++|.||+|+.+
T Consensus 76 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 76 KLQIWDTAGQERFRSITQSYYRSANALIL--TYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE 145 (201)
T ss_dssp EEEEEEECCSGGGHHHHGGGSTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEEEECCCcHHHHHHHHHHHhcCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 47888999999998 3334567788877 9998864321 123334333332 457788889999863
No 329
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.05 E-value=0.0001 Score=62.00 Aligned_cols=63 Identities=19% Similarity=0.167 Sum_probs=41.9
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCch-hHHHHHHHHHHc---CCCcEEEEeCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVG-MTKEHLGLALAL---SVPVFVVVTKIDMC 79 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~l---~i~~~v~lnk~Dl~ 79 (320)
.+.++|+||+++|. .......+|.+++ |++++.+..- ..++.+..++.. ++|+++|+||+|+.
T Consensus 78 ~l~i~Dt~G~~~~~~~~~~~~~~~d~iil--v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 78 VLQLWDTAGQERFRSIAKSYFRKADGVLL--LYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp EEEEEECTTCTTCHHHHHHHHHHCSEEEE--EEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred EEEEEECCCCcchhhhHHHHHhhCCEEEE--EEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 37789999999998 2222445777777 9999875432 222334333332 57899999999985
No 330
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.04 E-value=0.00011 Score=61.82 Aligned_cols=64 Identities=13% Similarity=0.050 Sum_probs=41.2
Q ss_pred ceEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCch-hHHHHH-HHHHHc---CCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIVG-MTKEHL-GLALAL---SVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l-~l~~~l---~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|..+ .....+|.+++ |++++....- .....+ .+.... ++|+++|+||+|+.+
T Consensus 63 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 63 QIDILDTAGQEDYAAIRDNYFRSGEGFLC--VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133 (206)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHHCSEEEE--EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG
T ss_pred EEEEEcCCChhhhHHHHHHHHhhCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc
Confidence 4778999999999821 22345677766 8888863321 112222 333333 678999999999964
No 331
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.04 E-value=8.9e-05 Score=63.21 Aligned_cols=64 Identities=13% Similarity=0.035 Sum_probs=40.7
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchh-HHHHHHHHHH----cCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGM-TKEHLGLALA----LSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~-t~~~l~l~~~----l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|. ...-...+|.+++ |++++.+..-. .++.+..... .++|+++|+||+|+.+
T Consensus 85 ~l~l~Dt~G~~~~~~~~~~~~~~~d~iil--V~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 85 HLQLWDTAGQERFRSLTTAFFRDAMGFLL--MFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp EEEEEEEESHHHHHHHHHHHHTTCCEEEE--EEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred EEEEEECCCcHhHHhHHHHHhcCCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 47889999999998 2222345677777 99998743211 1122221111 3457888999999964
No 332
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.04 E-value=0.00032 Score=61.00 Aligned_cols=72 Identities=14% Similarity=-0.036 Sum_probs=40.0
Q ss_pred CceEEEeCCCcc-----------hhh--ccCCCCccchhhhccceecCCCCchhHHHHHHHH-H----HcCCCcEEEEeC
Q psy15138 14 NAASVFETRIHE-----------RDD--DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLA-L----ALSVPVFVVVTK 75 (320)
Q Consensus 14 ~~~~~~d~pgh~-----------~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~-~----~l~i~~~v~lnk 75 (320)
..+.|+|+||+- +|. ......++|.+++ |++++. ......+.+... + ....|.++|+||
T Consensus 78 ~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 78 TELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLL--VVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp EEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEE--EEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred ceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEE--EeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 358899999953 444 2223457788877 999874 333334444222 2 223488899999
Q ss_pred CCCCChhHHHHHH
Q psy15138 76 IDMCPPNVLQDTL 88 (320)
Q Consensus 76 ~Dl~~~~~le~~l 88 (320)
+|+.....+++++
T Consensus 155 ~D~~~~~~~~~~i 167 (239)
T 3lxx_A 155 KDDLGDTNLHDYL 167 (239)
T ss_dssp GGGC---------
T ss_pred CccCCcccHHHHH
Confidence 9997665555444
No 333
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.03 E-value=0.00029 Score=61.38 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCcee
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHA 234 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i 234 (320)
|..++|.||+||||||+++.|. ..+.+ .+.+
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~-~~l~~-~~~~ 56 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVY-HRLVK-DYDV 56 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH-HHHTT-TSCE
T ss_pred CeEEEEEcCCCCCHHHHHHHHH-HHHhc-CCCc
Confidence 7889999999999999999999 77766 4444
No 334
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.02 E-value=0.00029 Score=65.06 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=20.1
Q ss_pred ccCcEEEEEcCCCChHHHHHHHHh
Q psy15138 200 FLEIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 200 ~~g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
|.....+|+||||||||||+..|.
T Consensus 21 f~~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 21 FKEGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHH
Confidence 444567999999999999999874
No 335
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.02 E-value=0.00039 Score=64.94 Aligned_cols=23 Identities=35% Similarity=0.677 Sum_probs=20.2
Q ss_pred EEEEcCCCChHHHHHHHHhcCcCC
Q psy15138 205 VAVVGNVDAGKSTLLGVLTHGELD 228 (320)
Q Consensus 205 v~ivGpnGsGKSTLl~~l~~G~l~ 228 (320)
++|+|++|||||||++.|+ |...
T Consensus 182 V~lvG~~naGKSTLln~L~-~~~~ 204 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLT-GLTQ 204 (364)
T ss_dssp EEEECBTTSSHHHHHHHHH-CC--
T ss_pred EEEECCCCCCHHHHHHHHH-CCCc
Confidence 8999999999999999999 8764
No 336
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.01 E-value=0.0011 Score=55.22 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=37.4
Q ss_pred ceEEEeCCCcchhhcc-CCCCccchhhhccceecCCCCc-hhHHHHHHHHHH------cCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDDDL-PEASPADHSMLQSKVGANAGIV-GMTKEHLGLALA------LSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~~-~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~------l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+||+++|..+ .-...+|.+++ |+++++... ...++.+..+.. -++|+++|.||+|+..
T Consensus 70 ~l~i~Dt~G~~~~~~~~~~~~~~~~~il--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 70 HLRVMDTADLDTPRNCERYLNWAHAFLV--VYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp EEEEEECCC---CCCTHHHHTTCSEEEE--EEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred EEEEEECCCCCcchhHHHHHhhCCEEEE--EEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 3667899999998721 12234677777 888886321 112223322222 3679999999999853
No 337
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.01 E-value=0.00035 Score=57.57 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
+..+.|+|++||||||+.+.|+ ..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La-~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQ-SVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH-HHS
T ss_pred ceEEEEECCCCCCHHHHHHHHH-Hhc
Confidence 3568999999999999999999 444
No 338
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.97 E-value=0.00033 Score=70.92 Aligned_cols=66 Identities=11% Similarity=0.088 Sum_probs=47.0
Q ss_pred CceEEEeCCCcchhh-----ccCCCCccchhhhccceecCCCCchhHHHHHH-HHHHcCCCcEEEEeCCCCCCh
Q psy15138 14 NAASVFETRIHERDD-----DLPEASPADHSMLQSKVGANAGIVGMTKEHLG-LALALSVPVFVVVTKIDMCPP 81 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~-----~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~-l~~~l~i~~~v~lnk~Dl~~~ 81 (320)
..+.++|+||+.+.. ...-...+|.+++ |++++.+......+.+. .+...+.|.++|+||+|+...
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~--Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILF--VMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEE--EEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEE--EEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 479999999976643 1111244788777 99999988776666553 444457788999999998644
No 339
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.97 E-value=0.00034 Score=58.68 Aligned_cols=64 Identities=13% Similarity=0.025 Sum_probs=41.7
Q ss_pred ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCchhH--HHHHHHHHHc--CCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIVGMT--KEHLGLALAL--SVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~~~t--~~~l~l~~~l--~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+||+++|.. -.-..++|.+++ |++++++..-.. ...+..++.. ++|+++|.||+|+..
T Consensus 69 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 69 RLQLCDTAGQDEFDKLRPLCYTNTDIFLL--CFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138 (201)
T ss_dssp EEEEEECCCSTTCSSSGGGGGTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGG
T ss_pred EEEEEECCCCHHHHHHhHhhcCCCcEEEE--EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 356889999999982 222456777777 999987432111 1233333332 678999999999964
No 340
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.97 E-value=0.00072 Score=57.74 Aligned_cols=64 Identities=19% Similarity=0.066 Sum_probs=43.2
Q ss_pred ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCchh--HHHHHHHHHHc--CCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIVGM--TKEHLGLALAL--SVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~~~--t~~~l~l~~~l--~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+||+++|.. -.-...+|.+++ |++++++..-. ....+..++.. ++|+++|.||+|+..
T Consensus 76 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 76 ELSLWDTSGSPYYDNVRPLCYSDSDAVLL--CFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp EEEEEEECCSGGGTTTGGGGCTTCSEEEE--EEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred EEEEEECCCCHhHHHHHHHHcCCCeEEEE--EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 467889999999982 222456788777 99998743221 23334444444 568888899999964
No 341
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.97 E-value=0.0002 Score=59.84 Aligned_cols=25 Identities=32% Similarity=0.270 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCCC
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGELDN 229 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~l~~ 229 (320)
.++|+|+||||||||++.|. +.+.+
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~-~~l~~ 32 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLI-PALCA 32 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHH-HHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH-Hhccc
Confidence 48999999999999999998 76543
No 342
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.96 E-value=0.00035 Score=58.98 Aligned_cols=19 Identities=42% Similarity=0.566 Sum_probs=17.7
Q ss_pred EEEEcCCCChHHHHHHHHh
Q psy15138 205 VAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 205 v~ivGpnGsGKSTLl~~l~ 223 (320)
+.|+||||||||||++.|.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999886
No 343
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=96.96 E-value=0.0012 Score=63.46 Aligned_cols=102 Identities=18% Similarity=0.232 Sum_probs=58.4
Q ss_pred ceEEEeCCCcchhh----------ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHH
Q psy15138 15 AASVFETRIHERDD----------DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVL 84 (320)
Q Consensus 15 ~~~~~d~pgh~~~~----------~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~l 84 (320)
.+.++|+||++++. .......+|.+++ |++++.+......+.+..+. ..|.++|+||+|+.+....
T Consensus 273 ~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~--VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~ 348 (462)
T 3geh_A 273 PVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLL--TIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLI 348 (462)
T ss_dssp EEEECC--------------------CCCCSCSEEEE--EEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGS
T ss_pred EEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEE--EeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhh
Confidence 47789999997764 1234567888888 99999988776655444332 3589999999999876443
Q ss_pred HHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHHc
Q psy15138 85 QDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDN 130 (320)
Q Consensus 85 e~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~~ 130 (320)
+ .+.. .....+ .+..+..+.+.++++...+......
T Consensus 349 ~--------~~~~-~~~~~~-~i~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 349 T--------SLEY-PENITQ-IVHTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp T--------TCCC-CTTCCC-EEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred H--------HHHH-hccCCc-EEEEECCCCCCHHHHHHHHHHHHhc
Confidence 2 0110 011111 1224456677788888888776543
No 344
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.96 E-value=0.00037 Score=63.27 Aligned_cols=27 Identities=41% Similarity=0.445 Sum_probs=23.0
Q ss_pred ccCcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 200 FLEIRVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 200 ~~g~~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
+++.+++|+|++|+|||||++.|. |..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~-g~~ 32 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLL-GQK 32 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHH-TCS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHH-CCC
Confidence 344579999999999999999999 763
No 345
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.96 E-value=0.00013 Score=59.68 Aligned_cols=64 Identities=14% Similarity=0.110 Sum_probs=41.2
Q ss_pred ceEEEeCCCcchhhccC--CCCccchhhhccceecCCCCc-hhHHHHHH-HHHH--cCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDDDLP--EASPADHSMLQSKVGANAGIV-GMTKEHLG-LALA--LSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~~~--~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~-l~~~--l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+||+++|..+. -...+|.+++ |++++.+.. ...++.+. +... .++|+++|+||+|+.+
T Consensus 64 ~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 64 RLQLWDTAGQERFRSLIPSYIRDSTVAVV--VYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 133 (179)
T ss_dssp EEEEEEECCSGGGGGGSHHHHHTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG
T ss_pred EEEEEECCCcHHHHHHHHHHhcCCCEEEE--EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 47888999999998222 1345677777 999986432 12222332 2222 3568889999999864
No 346
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.96 E-value=0.00062 Score=56.35 Aligned_cols=64 Identities=14% Similarity=0.045 Sum_probs=41.1
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhH--HHHHHHHHH--cCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMT--KEHLGLALA--LSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t--~~~l~l~~~--l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|. .-.-...+|.+++ |++++.+..-.. +..+..++. -++|++++.||+|+..
T Consensus 56 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 56 ELSLWDTSGSPYYDNVRPLSYPDSDAVLI--CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp EEEEEEECCSGGGTTTGGGGCTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred EEEEEECCCChhhhhhHHhhcCCCcEEEE--EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 47788999999998 2223456777777 999986322111 122222222 2568888889999964
No 347
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.95 E-value=0.00058 Score=55.21 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=36.5
Q ss_pred ceEEEeCCCcchhhc-cCC--CCccchhhhccceecCCCCc--hhHHHHHHHHHHc---CCCcEEEEeCCCCC
Q psy15138 15 AASVFETRIHERDDD-LPE--ASPADHSMLQSKVGANAGIV--GMTKEHLGLALAL---SVPVFVVVTKIDMC 79 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~-~~~--~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~l---~i~~~v~lnk~Dl~ 79 (320)
.+.++|+||+++|.. +.. ...+|.+++ |+++++... ........+.... ++|.+++.||+|+.
T Consensus 52 ~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 52 TLIVYDIWEQGDAGGWLQDHCLQTGDAFLI--VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp EEEEECCCCC--------CHHHHHCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred EEEEEECCCccccchhhhhhhhccCCEEEE--EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 366889999999972 332 334677777 999887321 1222222333333 67899999999986
No 348
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.95 E-value=0.00042 Score=56.60 Aligned_cols=64 Identities=13% Similarity=0.001 Sum_probs=41.0
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHH-----cCCC-cEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALA-----LSVP-VFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~-----l~i~-~~v~lnk~Dl~~ 80 (320)
.+.++|+|||++|. .-.-...+|.+++ |++++++.. ...+..+..++. -..| +++|.||+|+..
T Consensus 57 ~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 57 TLQIWDIGGQTIGGKMLDKYIYGAQGVLL--VYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129 (178)
T ss_dssp EEEEEECTTCCTTCTTHHHHHTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred EEEEEECCCCccccchhhHHHhhCCEEEE--EEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence 57889999999997 2222445677777 999987432 122223333322 2566 577889999864
No 349
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.93 E-value=0.00047 Score=56.06 Aligned_cols=64 Identities=14% Similarity=-0.007 Sum_probs=35.0
Q ss_pred ceEEEeCCCcchh--hcc--CCCCccchhhhccceecCCCCc-hhHHHHHHHHHHc----CCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERD--DDL--PEASPADHSMLQSKVGANAGIV-GMTKEHLGLALAL----SVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~--~~~--~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~l----~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+||++++ ..+ .-...+|.+++ |+++++... ...++.+..+... ++|+++|.||+|+.+
T Consensus 53 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 53 TLVVVDTWEAEKLDKSWSQESCLQGGSAYVI--VYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125 (175)
T ss_dssp EEEEECCC-------CHHHHHTTTSCSEEEE--EEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred EEEEEecCCCCccchhhhHHhhcccCCEEEE--EEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence 4678899999994 322 12345677777 888876322 1122233223322 678999999999964
No 350
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.92 E-value=0.00019 Score=60.54 Aligned_cols=64 Identities=17% Similarity=0.071 Sum_probs=41.6
Q ss_pred ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCch-hHHHHHHHHHH---cCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIVG-MTKEHLGLALA---LSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l~l~~~---l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+||+++|.. ......+|.+++ |++++.+..- ..+..+.-+.. -++|+++|+||+|+..
T Consensus 75 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 75 KLQIWDTAGQERFRSVTRSYYRGAAGALL--VYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP 144 (200)
T ss_dssp EEEEECCTTHHHHSCCCHHHHTTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG
T ss_pred EEEEEcCCCcHhHHHHHHHHhccCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 578899999999982 222445677777 9999874321 12223322222 2568889999999853
No 351
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.91 E-value=0.00051 Score=57.39 Aligned_cols=22 Identities=18% Similarity=0.502 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHh
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
+.+++|+|++||||||+.+.|+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La 31 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIA 31 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 6789999999999999999998
No 352
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.91 E-value=0.0014 Score=59.52 Aligned_cols=68 Identities=10% Similarity=0.032 Sum_probs=43.0
Q ss_pred ceEEEeCCCcchhh--ccCC-----CCccchhhhccceecCCCCchhHHHH-HH-HHHH----cCCCcEEEEeCCCCCCh
Q psy15138 15 AASVFETRIHERDD--DLPE-----ASPADHSMLQSKVGANAGIVGMTKEH-LG-LALA----LSVPVFVVVTKIDMCPP 81 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~-----~~~~d~~~l~~vv~a~~g~~~~t~~~-l~-l~~~----l~i~~~v~lnk~Dl~~~ 81 (320)
.+.++|+||+++|. .... ...+|.+++ |+++++...-...+. .. +... -++|.++++||+|+.+.
T Consensus 53 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~--V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~ 130 (307)
T 3r7w_A 53 TLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIH--VFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL 130 (307)
T ss_dssp EEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEE--EEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred EEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEE--EEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence 47788999999994 1111 135677777 999988653222211 11 2221 16789999999999875
Q ss_pred hHH
Q psy15138 82 NVL 84 (320)
Q Consensus 82 ~~l 84 (320)
+..
T Consensus 131 ~~r 133 (307)
T 3r7w_A 131 DKR 133 (307)
T ss_dssp HHH
T ss_pred hhh
Confidence 433
No 353
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.91 E-value=0.00048 Score=57.19 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHh
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
|..++|.|++||||||+.+.|+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999998
No 354
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.91 E-value=0.00045 Score=56.23 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=18.4
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
.++|+||+||||||+.+.|.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L~ 22 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLLK 22 (179)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999994
No 355
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=96.89 E-value=0.00054 Score=66.37 Aligned_cols=109 Identities=7% Similarity=-0.072 Sum_probs=61.9
Q ss_pred CceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCc--hhHHHHHHHHHH---cCCCcEEEEeCCCCCChhHHHH
Q psy15138 14 NAASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIV--GMTKEHLGLALA---LSVPVFVVVTKIDMCPPNVLQD 86 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~---l~i~~~v~lnk~Dl~~~~~le~ 86 (320)
..+.++|+||+++|.. ..-...+|.+++ |++++++.. ........+.+. .++|++||+||+|+......++
T Consensus 366 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~--V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~ 443 (497)
T 3lvq_E 366 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF--VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 443 (497)
T ss_dssp CEEEEEEECCCGGGSGGGGGGGTTCCEEEE--EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHH
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEE--EEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHH
Confidence 3588999999999982 223456787777 999987532 222222333332 3678899999999975433333
Q ss_pred HHHHHHHhhcCCCccccCcccc-ccCCchhHHHHHHHHHHHHH
Q psy15138 87 TLKLLVRILKSPGCRKVPVMNC-LISPTEEQFDLLQKKIKSLI 128 (320)
Q Consensus 87 ~l~~~~~~l~~~~~~~i~~kl~-~~~gnyd~~~~l~~q~~~~~ 128 (320)
+.+ .+...........+. .+..+.+.++++...+.+.+
T Consensus 444 ~~~----~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 482 (497)
T 3lvq_E 444 IQE----KLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 482 (497)
T ss_dssp HHH----HTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHH----HhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 222 221111111111122 33456667777777766543
No 356
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.88 E-value=0.00029 Score=69.36 Aligned_cols=36 Identities=14% Similarity=0.096 Sum_probs=31.1
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK 237 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~ 237 (320)
.|..++|+||||+|||||+++|+ +.+.+..|.+...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia-~~l~~~~~~i~~~ 142 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIA-KSLGRKFVRISLG 142 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHH-HHHTCEEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHH-HhcCCCeEEEEec
Confidence 47889999999999999999999 8888777776554
No 357
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.88 E-value=0.0003 Score=60.21 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=42.4
Q ss_pred ceEEEeCCCcchhhcc--CCCCccchhhhccceecCCCCch-hHHHHH-HHHHHc-CCCcEEEEeCCCCCCh
Q psy15138 15 AASVFETRIHERDDDL--PEASPADHSMLQSKVGANAGIVG-MTKEHL-GLALAL-SVPVFVVVTKIDMCPP 81 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~~--~~~~~~d~~~l~~vv~a~~g~~~-~t~~~l-~l~~~l-~i~~~v~lnk~Dl~~~ 81 (320)
.+.++|+|||++|..+ .....+|.+++ |++++++..- ..+..+ .+.+.. ++|+++|+||+|+...
T Consensus 65 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 65 KFNVWDTAGQEKFGGLRDGYYIQAQCAII--MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 134 (221)
T ss_dssp EEEEEEECSGGGTSCCCHHHHTTCCEEEE--EEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSC
T ss_pred EEEEEeCCChHHHhHHHHHHHhcCCEEEE--EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccc
Confidence 4778899999999822 22345777777 9999874321 112222 333332 6699999999999653
No 358
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.88 E-value=0.0001 Score=61.52 Aligned_cols=64 Identities=16% Similarity=0.036 Sum_probs=42.4
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCc-hhHHHHHHHHHH---cCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIV-GMTKEHLGLALA---LSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~-~~t~~~l~l~~~---l~i~~~v~lnk~Dl~~ 80 (320)
.+.|+|+||+++|. ...-...+|.+++ |++++++.. ...++.+..++. -++|+++|.||+|+..
T Consensus 73 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 142 (191)
T 3dz8_A 73 KLQIWDTAGQERYRTITTAYYRGAMGFIL--MYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142 (191)
T ss_dssp EEEEECHHHHHHCHHHHHHHHTTCCEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred EEEEEeCCChHHHHHHHHHHHccCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 48889999999998 2222445677777 999986322 222334444444 3567888889999853
No 359
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.87 E-value=0.00051 Score=57.70 Aligned_cols=21 Identities=38% Similarity=0.657 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHG 225 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G 225 (320)
.++|+|++||||||+.+.|+ .
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~-~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEIS-K 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHH-H
T ss_pred EEEEECCCccCHHHHHHHHH-H
Confidence 58999999999999999998 5
No 360
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.86 E-value=0.00093 Score=55.54 Aligned_cols=59 Identities=14% Similarity=-0.041 Sum_probs=38.2
Q ss_pred eEEEeCCCcchhhccCCCCccchhhhccceecCCCCchhH-HHHHHHHHH----cCCCcEEEEeCCCCC
Q psy15138 16 ASVFETRIHERDDDLPEASPADHSMLQSKVGANAGIVGMT-KEHLGLALA----LSVPVFVVVTKIDMC 79 (320)
Q Consensus 16 ~~~~d~pgh~~~~~~~~~~~~d~~~l~~vv~a~~g~~~~t-~~~l~l~~~----l~i~~~v~lnk~Dl~ 79 (320)
+.++|+||+++|.. ...+|.+++ |+++++...-.. ...+..... .++|++++.||+|+.
T Consensus 69 l~i~Dt~G~~~~~~---~~~~~~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 69 LLIRDEGGPPELQF---AAWVDAVVF--VFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp EEEEECSSSCCHHH---HHHCSEEEE--EEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred EEEEECCCChhhhe---ecCCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 56689999999872 234577777 999987432221 222322222 356888889999983
No 361
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.86 E-value=0.00046 Score=59.79 Aligned_cols=42 Identities=14% Similarity=0.029 Sum_probs=28.5
Q ss_pred ccCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138 196 ESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK 237 (320)
Q Consensus 196 ~~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~ 237 (320)
..+-..|+.++|+||||||||||+..++.+..+.+.+.+.+.
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 444445999999999999999996544414445444444444
No 362
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.84 E-value=0.0019 Score=60.17 Aligned_cols=53 Identities=11% Similarity=0.118 Sum_probs=33.9
Q ss_pred ceec-CCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHHHHhhcC
Q psy15138 44 KVGA-NAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKS 97 (320)
Q Consensus 44 vv~a-~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~~~~l~~ 97 (320)
+|.. ..++.+...+.+..+ ..++|+++|+||+|+.+...+....+++...+..
T Consensus 152 ~I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~ 205 (361)
T 2qag_A 152 FISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAKADTLTLKERERLKKRILDEIEE 205 (361)
T ss_dssp EECSSSSSCCHHHHHHHHHT-CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTC
T ss_pred EEecCCCCcchhHHHHHHHh-ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 5554 556655554333222 1346899999999999887777666677776544
No 363
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.83 E-value=0.00059 Score=59.37 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHG 225 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G 225 (320)
+.+++|+|++||||||+.+.|+ +
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~-~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIA-K 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHH-H
T ss_pred CcEEEEECCCCCCHHHHHHHHH-H
Confidence 7889999999999999999998 5
No 364
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.82 E-value=0.00051 Score=56.68 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
+++|+|++||||||+.+.|+
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 37999999999999999998
No 365
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.82 E-value=0.00059 Score=67.92 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCC-ceeee
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGR-GHARQ 236 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~-G~i~~ 236 (320)
|+.+.|+||||+|||||+++|+ +.+++.. |.+.+
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia-~~l~~~~~~~~~~ 94 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMA-ELLPTETLEDILV 94 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHH-HTSCCSSCEEEEE
T ss_pred CCEEEEEeCCCCCHHHHHHHHh-ccCCcccCCeEEE
Confidence 6779999999999999999999 9998876 55544
No 366
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.78 E-value=0.00066 Score=58.09 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.7
Q ss_pred cEEEEEcCCCChHHHHHHHHh
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~ 223 (320)
..++|+|++||||||+.+.|+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999998
No 367
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.77 E-value=0.00035 Score=59.35 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGELD 228 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~l~ 228 (320)
.++|.|++||||||+++.|. ..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~-~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS-GAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH-HHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH-HHHH
Confidence 48999999999999999998 6554
No 368
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.75 E-value=0.00031 Score=58.37 Aligned_cols=64 Identities=11% Similarity=0.025 Sum_probs=41.2
Q ss_pred ceEEEeCCCcchhh-ccC--CCCccchhhhccceecCCCCch-hHHHHH-HHHHH---cCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDD-DLP--EASPADHSMLQSKVGANAGIVG-MTKEHL-GLALA---LSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~-~~~--~~~~~d~~~l~~vv~a~~g~~~-~t~~~l-~l~~~---l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+||+++|. .+. -...+|.+++ |++++.+..- ..++.+ .+.+. .++|+++|+||+|+.+
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~~d~iil--v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 1z06_A 70 KIQLWDTAGQERFRKSMVQHYYRNVHAVVF--VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 141 (189)
T ss_dssp EEEEEECCCSHHHHTTTHHHHHTTCCEEEE--EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG
T ss_pred EEEEEECCCchhhhhhhhHHHhcCCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 47889999999996 221 1345677777 9999863221 112222 23333 3568899999999964
No 369
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.73 E-value=0.00082 Score=55.77 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHh
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
+..+.|+|++||||||+.+.|+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999998
No 370
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.73 E-value=0.00077 Score=55.39 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
.+.|.|++||||||+.+.|.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~ 23 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFI 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHH
Confidence 48999999999999999998
No 371
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.73 E-value=0.00074 Score=59.05 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=19.5
Q ss_pred cEEEEEcCCCChHHHHHHHHh
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~ 223 (320)
.+++|.||+||||||+.+.|+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999998
No 372
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.71 E-value=0.00079 Score=56.07 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHh
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
+..+.|+|++||||||+.+.|+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999998
No 373
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.71 E-value=0.00085 Score=56.46 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
|..++|+|+.||||||+.+.|. ..+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~-~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIM-ESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH-HTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHH-HHH
Confidence 5679999999999999999999 444
No 374
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.71 E-value=0.00061 Score=64.90 Aligned_cols=37 Identities=16% Similarity=-0.046 Sum_probs=32.7
Q ss_pred cCcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL 238 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~ 238 (320)
.+.+++++|+|||||||++..|+ +.+.+..+.+.+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA-~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLA-LYYKGKGRRPLLVA 133 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH-HHHHTTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHH-HHHHHcCCeEEEee
Confidence 57889999999999999999999 99988888887653
No 375
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.71 E-value=0.00075 Score=60.01 Aligned_cols=24 Identities=46% Similarity=0.692 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGELD 228 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~l~ 228 (320)
+++|+|++|||||||++.|+ |...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~-g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALT-GLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHH-TTCE
T ss_pred EEEEECCCCCCHHHHHHHHh-CCCc
Confidence 58999999999999999999 7643
No 376
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=96.70 E-value=0.0006 Score=61.77 Aligned_cols=64 Identities=14% Similarity=0.049 Sum_probs=43.2
Q ss_pred eEEEeCCCcchhh--ccCCCCccchhhhccceecCCCCchhHH--HHHHHHHHc--CCCcEEEEeCCCCCCh
Q psy15138 16 ASVFETRIHERDD--DLPEASPADHSMLQSKVGANAGIVGMTK--EHLGLALAL--SVPVFVVVTKIDMCPP 81 (320)
Q Consensus 16 ~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~g~~~~t~--~~l~l~~~l--~i~~~v~lnk~Dl~~~ 81 (320)
+.++|+||+++|. .-.-...+|.+++ |++++++..-... ..+..++.. ++|+++|.||+|+.+.
T Consensus 205 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLI--CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274 (332)
T ss_dssp EEEEEECCCGGGTTTGGGGCTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTC
T ss_pred EEEEeCCCchhhhHHHHHhccCCCEEEE--EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccc
Confidence 4588999999998 2233567788877 9999874332111 233334433 6799999999998654
No 377
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.69 E-value=0.0045 Score=52.03 Aligned_cols=109 Identities=13% Similarity=0.150 Sum_probs=62.1
Q ss_pred ceEEEeCCCcch----------hh-----ccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC
Q psy15138 15 AASVFETRIHER----------DD-----DLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC 79 (320)
Q Consensus 15 ~~~~~d~pgh~~----------~~-----~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~ 79 (320)
.+.++|+||+.. |. .+......|.+++ ++++..+......+-...+...++|.+++.||+|+.
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~ 150 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVV--LMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKL 150 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEE--EEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEE--EEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCC
Confidence 577899999942 32 1111234566666 888888776554444556667788999999999998
Q ss_pred ChhHHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138 80 PPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL 127 (320)
Q Consensus 80 ~~~~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~ 127 (320)
+....+..+..+...+..... .+.. +-...-+....+++...+.+.
T Consensus 151 s~~~~~~~~~~~~~~~~~~~~-~~~~-~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 151 ASGARKAQLNMVREAVLAFNG-DVQV-ETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp CHHHHHHHHHHHHHHHGGGCS-CEEE-EECBTTTTBSHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhcCC-CCce-EEEeecCCCCHHHHHHHHHHH
Confidence 765433323444444332110 0111 112334555566666655544
No 378
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.69 E-value=0.0008 Score=56.50 Aligned_cols=21 Identities=38% Similarity=0.702 Sum_probs=19.7
Q ss_pred cEEEEEcCCCChHHHHHHHHh
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~ 223 (320)
..++|+|++||||||+.+.|+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999999
No 379
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.68 E-value=0.00038 Score=61.93 Aligned_cols=104 Identities=13% Similarity=0.044 Sum_probs=58.5
Q ss_pred ceEEEeCCCcchhhc------cC----CCCccchhhhccceecCCCCchhHHHHHHHHHHcC-CCcEEEEeCCCCCChhH
Q psy15138 15 AASVFETRIHERDDD------LP----EASPADHSMLQSKVGANAGIVGMTKEHLGLALALS-VPVFVVVTKIDMCPPNV 83 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~------~~----~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~-i~~~v~lnk~Dl~~~~~ 83 (320)
.+.++|+||+.+|.. +. ....+|.+++ |+++..+. .......-+..++ +|.++++||+|+.....
T Consensus 51 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~--v~D~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~ 126 (271)
T 3k53_A 51 EFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVD--IVDSTCLM--RNLFLTLELFEMEVKNIILVLNKFDLLKKKG 126 (271)
T ss_dssp EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEE--EEEGGGHH--HHHHHHHHHHHTTCCSEEEEEECHHHHHHHT
T ss_pred eEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEE--EecCCcch--hhHHHHHHHHhcCCCCEEEEEEChhcCcccc
Confidence 478999999998752 11 1246788877 99998742 2222233334456 89999999999754322
Q ss_pred HHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHH
Q psy15138 84 LQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLID 129 (320)
Q Consensus 84 le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~ 129 (320)
.....+.+...+. +.-++ .+..+...+.++...+.....
T Consensus 127 ~~~~~~~l~~~lg---~~~~~----~Sa~~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 127 AKIDIKKMRKELG---VPVIP----TNAKKGEGVEELKRMIALMAE 165 (271)
T ss_dssp CCCCHHHHHHHHS---SCEEE----CBGGGTBTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcC---CcEEE----EEeCCCCCHHHHHHHHHHHHh
Confidence 1111233333321 11111 223445566777666665543
No 380
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.68 E-value=0.00082 Score=59.33 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGE 226 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~ 226 (320)
.++|+||+|||||||.+.|+ ..
T Consensus 3 li~I~G~~GSGKSTla~~La-~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA-QE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HH
T ss_pred EEEEECCCCcCHHHHHHHHH-hc
Confidence 47999999999999999998 44
No 381
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.68 E-value=0.00081 Score=55.64 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHh
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
+..+.|+|++||||||+.+.|+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4568999999999999999998
No 382
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.67 E-value=0.00073 Score=62.38 Aligned_cols=108 Identities=13% Similarity=-0.017 Sum_probs=59.6
Q ss_pred CCceEEEeCCCcchhhccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHHHHHHHHHH
Q psy15138 13 ENAASVFETRIHERDDDLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLV 92 (320)
Q Consensus 13 ~~~~~~~d~pgh~~~~~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~le~~l~~~~ 92 (320)
...+.|+|+||+.++.... ...+|.+++ |+++..+...+.... ...++|.++++||+|+.....++..++++.
T Consensus 148 ~~~i~liDTpG~~~~~~~~-~~~aD~vl~--Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~ 220 (341)
T 2p67_A 148 GYDVVIVETVGVGQSETEV-ARMVDCFIS--LQIAGGGDDLQGIKK----GLMEVADLIVINKDDGDNHTNVAIARHMYE 220 (341)
T ss_dssp TCSEEEEEEECCTTHHHHH-HTTCSEEEE--EECC------CCCCH----HHHHHCSEEEECCCCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCccchHHHH-HHhCCEEEE--EEeCCccHHHHHHHH----hhhcccCEEEEECCCCCChHHHHHHHHHHH
Confidence 3468999999998777211 367888877 888876532111111 123568999999999987655555555555
Q ss_pred HhhcC--CCccc-cCccccccCCchhHHHHHHHHHHHH
Q psy15138 93 RILKS--PGCRK-VPVMNCLISPTEEQFDLLQKKIKSL 127 (320)
Q Consensus 93 ~~l~~--~~~~~-i~~kl~~~~gnyd~~~~l~~q~~~~ 127 (320)
..+.. ..... .+..+.....+.+.++++...+...
T Consensus 221 ~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~ 258 (341)
T 2p67_A 221 SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDF 258 (341)
T ss_dssp HHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred HHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHH
Confidence 53321 10010 1111223334556677766666544
No 383
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.66 E-value=0.00046 Score=62.61 Aligned_cols=35 Identities=20% Similarity=0.110 Sum_probs=31.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK 237 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~ 237 (320)
+.+++++|++|+||||++..|+ +.+.+..+.+.+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la-~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLA-YFYKKKGFKVGLV 132 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHH-HHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHH-HHHHHCCCeEEEE
Confidence 7889999999999999999999 8888777777664
No 384
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.64 E-value=0.00091 Score=55.52 Aligned_cols=20 Identities=35% Similarity=0.336 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
.++|.|++||||||+.+.|.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999998
No 385
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.63 E-value=0.001 Score=56.19 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
|..++|.|++||||||+.+.|+ ..+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~-~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLK-DWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH-HHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHH-HHH
Confidence 4568999999999999999998 443
No 386
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.62 E-value=0.0015 Score=55.35 Aligned_cols=64 Identities=14% Similarity=0.067 Sum_probs=41.1
Q ss_pred ceEEEeCCCcchhhc--cCCCCccchhhhccceecCCCCch--hHHHHHHHHHH--cCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDDD--LPEASPADHSMLQSKVGANAGIVG--MTKEHLGLALA--LSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~--~~~~~~~d~~~l~~vv~a~~g~~~--~t~~~l~l~~~--l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+||+++|.. -.-...+|.+++ |++++....- ..+..+..++. -++|+++|.||+|+..
T Consensus 77 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~il--v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 77 ELSLWDTSGSPYYDNVRPLSYPDSDAVLI--CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp EEEEEEECCSGGGTTTGGGGCTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred EEEEEeCCCcHhhhHHHHhhccCCCEEEE--EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 478889999999982 222456777777 9998863211 11222222332 2568888889999964
No 387
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.62 E-value=0.00058 Score=61.80 Aligned_cols=67 Identities=9% Similarity=0.025 Sum_probs=42.2
Q ss_pred CceEEEeCCCcch-------------hh--ccCCCCccchhhhccceec-CCCCchhHH-HHHHHHHHcCCCcEEEEeCC
Q psy15138 14 NAASVFETRIHER-------------DD--DLPEASPADHSMLQSKVGA-NAGIVGMTK-EHLGLALALSVPVFVVVTKI 76 (320)
Q Consensus 14 ~~~~~~d~pgh~~-------------~~--~~~~~~~~d~~~l~~vv~a-~~g~~~~t~-~~l~l~~~l~i~~~v~lnk~ 76 (320)
..+.|+|+||+.+ |. .......+|.+++ |+++ +.++..... +-+..+...+.|.++|+||+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iil--vvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~ 208 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIV--AVTPANTDLANSDALQLAKEVDPEGKRTIGVITKL 208 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEE--EEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECT
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEE--EEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCc
Confidence 4699999999864 22 1111345676666 7775 666554332 33344444577999999999
Q ss_pred CCCChh
Q psy15138 77 DMCPPN 82 (320)
Q Consensus 77 Dl~~~~ 82 (320)
|+....
T Consensus 209 Dl~~~~ 214 (315)
T 1jwy_B 209 DLMDKG 214 (315)
T ss_dssp TSSCSS
T ss_pred ccCCcc
Confidence 997543
No 388
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.61 E-value=0.0013 Score=61.22 Aligned_cols=34 Identities=29% Similarity=0.471 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcC-----------cCCCCCceeee
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHG-----------ELDNGRGHARQ 236 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G-----------~l~~~~G~i~~ 236 (320)
+.+++|+|.+|+|||||++.|+ + ...|..|.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt-~~~~~v~~~p~tTi~p~~g~v~~ 46 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALT-KAGIEAANYPFCTIEPNTGVVPM 46 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH-HTC------CCCCCCCCSSEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHH-CCCCcccCCCCceECceEEEEec
Confidence 4579999999999999999998 6 23455666554
No 389
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.59 E-value=0.00077 Score=59.39 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELD 228 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~ 228 (320)
+..+.|+|++||||||+.+.|. ..+.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~-~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQ-KEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHH-HHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHH-HhcC
Confidence 5568999999999999999998 6553
No 390
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.59 E-value=0.001 Score=53.55 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
+++++|++|+|||||++.+. +..
T Consensus 4 ki~~vG~~~~GKSsli~~l~-~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG-GVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC-CC-
T ss_pred EEEEECCCCCCHHHHHHHHc-Ccc
Confidence 58999999999999999998 654
No 391
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.59 E-value=0.0011 Score=56.11 Aligned_cols=22 Identities=27% Similarity=0.188 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHh
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
|..++|.|++||||||+.+.|.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 6679999999999999999998
No 392
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.59 E-value=0.0011 Score=56.55 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
+++|+||+||||||+.+.|+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999996
No 393
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.59 E-value=0.00012 Score=64.89 Aligned_cols=103 Identities=12% Similarity=0.031 Sum_probs=56.5
Q ss_pred CceEEEeCCCcchhhc----------cC----CCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCC
Q psy15138 14 NAASVFETRIHERDDD----------LP----EASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMC 79 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~~----------~~----~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~ 79 (320)
..+.++|+||+.+|.. +. ....+|.+++ |++++.. .....-......+++|+++++||+|+.
T Consensus 48 ~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~--VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~ 123 (256)
T 3iby_A 48 HLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIIN--VIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIA 123 (256)
T ss_dssp EEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEE--EEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHH
T ss_pred eEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEE--EeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 3578999999988741 11 0156888877 9999861 111112223334567999999999986
Q ss_pred ChhHHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138 80 PPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL 127 (320)
Q Consensus 80 ~~~~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~ 127 (320)
.....+...+++...+. |.-+ -.+..+.++++++...+.+.
T Consensus 124 ~~~~~~~~~~~l~~~lg---~~vi----~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 124 EHRGISIDTEKLESLLG---CSVI----PIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp HHTTCEECHHHHHHHHC---SCEE----ECBGGGTBSHHHHHHHHHTC
T ss_pred CcCCcHHHHHHHHHHcC---CCEE----EEECCCCCCHHHHHHHHHhh
Confidence 43322222233333321 2111 12234455666666665443
No 394
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.57 E-value=0.00087 Score=62.45 Aligned_cols=28 Identities=32% Similarity=0.234 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCCCCCc
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGELDNGRG 232 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~l~~~~G 232 (320)
+++|+|++|+|||||++.|. +...+..+
T Consensus 39 ~I~vvG~~g~GKSTLln~L~-~~~~~~~~ 66 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLF-LTDLYPER 66 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHT-TCCC----
T ss_pred EEEEEcCCCCCHHHHHHHHh-CCCCCCCC
Confidence 37999999999999999988 66444333
No 395
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.56 E-value=0.0007 Score=63.52 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
|++++|+||+|+|||||++.|+ +..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Ia-r~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIA-QSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHH-HHH
T ss_pred CcEEEEecCCCCChhHHHHHHH-HHH
Confidence 9999999999999999999998 554
No 396
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.55 E-value=0.00074 Score=60.49 Aligned_cols=67 Identities=10% Similarity=0.020 Sum_probs=41.4
Q ss_pred CceEEEeCCCcch-------------hh-ccCC-CCccchhhhccceecCCCCchhHH-HHHHHHHHcCCCcEEEEeCCC
Q psy15138 14 NAASVFETRIHER-------------DD-DLPE-ASPADHSMLQSKVGANAGIVGMTK-EHLGLALALSVPVFVVVTKID 77 (320)
Q Consensus 14 ~~~~~~d~pgh~~-------------~~-~~~~-~~~~d~~~l~~vv~a~~g~~~~t~-~~l~l~~~l~i~~~v~lnk~D 77 (320)
..+.|+|+||+.+ |. +... ...+|.++ ++|++++.+...+.. +.+..+...+.|.++|+||+|
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-l~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~D 203 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLI-LAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 203 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEE-EEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGG
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEE-EEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccc
Confidence 5789999999642 22 1111 11333222 238899887776653 233444445679999999999
Q ss_pred CCCh
Q psy15138 78 MCPP 81 (320)
Q Consensus 78 l~~~ 81 (320)
+.+.
T Consensus 204 l~~~ 207 (299)
T 2aka_B 204 LMDE 207 (299)
T ss_dssp GSCT
T ss_pred cCCC
Confidence 9754
No 397
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.55 E-value=0.0012 Score=54.99 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHh
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
+..++|+|++||||||+.+.|+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4569999999999999999998
No 398
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.54 E-value=0.0012 Score=55.06 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
.++|.|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~ 21 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLA 21 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999998
No 399
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.54 E-value=0.0013 Score=53.27 Aligned_cols=23 Identities=30% Similarity=0.661 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
+++|+|++|+|||||++.+. +..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~-~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFA-GKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHH-CC-
T ss_pred EEEEECCCCccHHHHHHHHh-cCC
Confidence 58999999999999999998 543
No 400
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.52 E-value=0.0011 Score=59.64 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
+..+.|.|||||||||+.+.|. ..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~-~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIF-EET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHH-HHT
T ss_pred CeEEEEECCCCCCHHHHHHHHH-HHh
Confidence 4568999999999999999998 443
No 401
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.52 E-value=0.0014 Score=52.85 Aligned_cols=23 Identities=43% Similarity=0.642 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
+++++|++|+|||||++.+. +..
T Consensus 4 ki~ivG~~~~GKSsli~~l~-~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG-GLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH-CC-
T ss_pred EEEEECCCCCCHHHHHHHHH-hcc
Confidence 58999999999999999998 543
No 402
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.51 E-value=0.0013 Score=56.10 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
+++|+||+||||||+.+.|+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
No 403
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.51 E-value=0.0013 Score=54.91 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHh
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
.-+++++|++|+|||||++.+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~ 44 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLK 44 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 4579999999999999999998
No 404
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.51 E-value=0.0014 Score=54.54 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=19.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHh
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
+..++|+|++||||||+.+.|+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999987
No 405
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.51 E-value=0.0014 Score=52.76 Aligned_cols=21 Identities=43% Similarity=0.493 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHG 225 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G 225 (320)
+++++|+.|+|||||++.+. +
T Consensus 5 ~i~v~G~~~~GKssli~~l~-~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFV-K 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHH-T
T ss_pred EEEEECCCCCCHHHHHHHHH-c
Confidence 58999999999999999998 5
No 406
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.50 E-value=0.0013 Score=54.47 Aligned_cols=24 Identities=46% Similarity=0.695 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCc
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGE 226 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~ 226 (320)
.-+++|+|++|+|||||++.+. +.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~-~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLA-SE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHC-CS
T ss_pred ceEEEEECCCCCCHHHHHHHHh-cC
Confidence 3468999999999999999999 55
No 407
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.49 E-value=0.0014 Score=52.62 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
+++++|+.|+|||||++.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 58999999999999999998
No 408
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.49 E-value=0.002 Score=53.41 Aligned_cols=24 Identities=38% Similarity=0.689 Sum_probs=19.8
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLTHGE 226 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~~G~ 226 (320)
-+++|+|++|+|||||++.+..+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999997665354
No 409
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.49 E-value=0.0014 Score=55.52 Aligned_cols=22 Identities=32% Similarity=0.229 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHh
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
|..++|.|+.||||||+.+.|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 5679999999999999999998
No 410
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.48 E-value=0.0011 Score=54.92 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLTHGE 226 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~~G~ 226 (320)
-+++|+|++|+|||||++.+. +.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~-~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLT-TD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHH-HS
T ss_pred CEEEEECCCCCCHHHHHHHHh-cC
Confidence 358999999999999999998 54
No 411
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.48 E-value=0.00082 Score=62.52 Aligned_cols=40 Identities=23% Similarity=0.108 Sum_probs=31.8
Q ss_pred ccc-cCCccCcEEEEEcCCCChHHHHHHHHhcCcCCCCCcee
Q psy15138 194 RVE-SQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHA 234 (320)
Q Consensus 194 ~l~-~~~~~g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i 234 (320)
.+. .+...|+.+.|.||+|||||||+..++ ....+..|.+
T Consensus 52 ~Lg~GGi~~G~i~~I~GppGsGKSTLal~la-~~~~~~gg~V 92 (356)
T 3hr8_A 52 ATGVGGYPRGRIVEIFGQESSGKTTLALHAI-AEAQKMGGVA 92 (356)
T ss_dssp HTSSSSEETTEEEEEEESTTSSHHHHHHHHH-HHHHHTTCCE
T ss_pred HhccCCccCCcEEEEECCCCCCHHHHHHHHH-HHHHhcCCeE
Confidence 344 344459999999999999999999999 7776666655
No 412
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.46 E-value=0.0015 Score=54.59 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHh
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
+..++|+|++||||||+.+.|+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4468999999999999999998
No 413
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.46 E-value=0.0015 Score=57.38 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
.-+|+|+|++|+|||||++.|. |.-
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~-~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSIL-GQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHH-TSC
T ss_pred ceEEEEECCCCCcHHHHHHHHh-CCC
Confidence 3468999999999999999999 754
No 414
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.46 E-value=0.0015 Score=55.04 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGE 226 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~ 226 (320)
.++|.|++||||||+.+.|+ ..
T Consensus 4 ~i~i~G~~GsGKst~~~~la-~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVA-AA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 58999999999999999998 54
No 415
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.45 E-value=0.0065 Score=55.37 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.2
Q ss_pred cCcEEEEEcCCCChHHHHHHHHh
Q psy15138 201 LEIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 201 ~g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
.|.-++|+|+||+|||||...|.
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~ 165 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELI 165 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHH
Confidence 36679999999999999998777
No 416
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.45 E-value=0.0015 Score=54.13 Aligned_cols=24 Identities=29% Similarity=0.291 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGELD 228 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~l~ 228 (320)
.++|+|++|||||||+..|. ..+.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~-~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWV-AAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHHHHH-HhhH
Confidence 48999999999999999888 6654
No 417
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.45 E-value=0.0014 Score=53.30 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGE 226 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~ 226 (320)
+++|+|++|+|||||++.+. +.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~-~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFA-DN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHC-SC
T ss_pred EEEEECCCCCCHHHHHHHHh-cC
Confidence 48999999999999999998 54
No 418
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.44 E-value=0.001 Score=62.41 Aligned_cols=35 Identities=14% Similarity=-0.038 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeeec
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQK 237 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~ 237 (320)
+..++|+||+|||||||++.|. +...+..+.+.+.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~-~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLL-LREYMQGSRVIII 69 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH-HHHHTTTCCEEEE
T ss_pred cCceEEEcCCCCCHHHHHHHHH-HHHHHCCCEEEEE
Confidence 5568999999999999999999 7666666666553
No 419
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.43 E-value=0.0016 Score=54.11 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCc
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGE 226 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~ 226 (320)
--+++|+|+.|+|||||++.+. +.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~-~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLI-NR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHH-TC
T ss_pred CCEEEEECCCCCCHHHHHHHHh-CC
Confidence 3468999999999999999998 54
No 420
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.43 E-value=0.0017 Score=52.02 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHG 225 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G 225 (320)
+++++|+.|+|||||++.+..+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999988733
No 421
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.42 E-value=0.0013 Score=52.47 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGE 226 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~ 226 (320)
+++++|+.|+|||||++.+. +.
T Consensus 3 ki~v~G~~~~GKSsli~~l~-~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLL-KK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HC
T ss_pred EEEEECCCCCCHHHHHHHHh-CC
Confidence 58999999999999999998 44
No 422
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.42 E-value=0.0016 Score=58.17 Aligned_cols=23 Identities=35% Similarity=0.768 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
+++|+|++|+|||||++.++ |..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~-g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLIT-GHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHH-CCC
T ss_pred EEEEECCCCCCHHHHHHHHH-CCC
Confidence 58999999999999999999 753
No 423
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.41 E-value=0.0017 Score=52.90 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
+++|.|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLS 21 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999998
No 424
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.41 E-value=0.0016 Score=53.78 Aligned_cols=23 Identities=43% Similarity=0.551 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLTHGE 226 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~~G~ 226 (320)
-+++|+|+.|+|||||++.+. +.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~-~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALF-NR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH-TS
T ss_pred eEEEEECCCCCCHHHHHHHHH-cC
Confidence 368999999999999999998 54
No 425
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.41 E-value=0.0039 Score=51.48 Aligned_cols=113 Identities=16% Similarity=0.074 Sum_probs=59.8
Q ss_pred CceEEEeCCCcchhhccCC--CCccchhhhccceecCCCCc--hhHHHHHHHHHH--cCCCcEEEEeCCCCCChhHHHHH
Q psy15138 14 NAASVFETRIHERDDDLPE--ASPADHSMLQSKVGANAGIV--GMTKEHLGLALA--LSVPVFVVVTKIDMCPPNVLQDT 87 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~~~~~--~~~~d~~~l~~vv~a~~g~~--~~t~~~l~l~~~--l~i~~~v~lnk~Dl~~~~~le~~ 87 (320)
-.+.++|+||.++|..+.. ..+.|.+++ |++.+++.. ...++.+.-++. -++|+++|.||+|+.+.......
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~--v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 133 (184)
T 2zej_A 56 LVLNVWDFAGREEFYSTHPHFMTQRALYLA--VYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKAC 133 (184)
T ss_dssp CEEEEEEECSHHHHHTTSHHHHHHSEEEEE--EEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHH
T ss_pred eEEEEEecCCCHHHHHhhHHHccCCcEEEE--EEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHH
Confidence 3578889999999983221 123455555 888877532 122233332222 25677888899999876444333
Q ss_pred HHHHHHhhc-CCCccccCcccc-ccCCch-hHHHHHHHHHHHHHH
Q psy15138 88 LKLLVRILK-SPGCRKVPVMNC-LISPTE-EQFDLLQKKIKSLID 129 (320)
Q Consensus 88 l~~~~~~l~-~~~~~~i~~kl~-~~~gny-d~~~~l~~q~~~~~~ 129 (320)
..+....+. ...+... .... .+..+. +.++++...+.+.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 134 MSKITKELLNKRGFPAI-RDYHFVNATEESDALAKLRKTIINESL 177 (184)
T ss_dssp HHHHHHHTTTCTTSCEE-EEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcch-hheEEEecccCchhHHHHHHHHHHHHh
Confidence 222222222 1222210 0111 222333 578888888776544
No 426
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.41 E-value=0.0014 Score=55.20 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHG 225 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G 225 (320)
.-+++++|++|+|||||++.+. +
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~-~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLK-D 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHS-C
T ss_pred CcEEEEECCCCCCHHHHHHHHh-c
Confidence 4468999999999999999998 5
No 427
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.41 E-value=0.0018 Score=52.73 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHh
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
.-+++|+|++|+|||||++.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4568999999999999999998
No 428
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.41 E-value=0.004 Score=59.37 Aligned_cols=108 Identities=17% Similarity=0.119 Sum_probs=61.0
Q ss_pred ceEEEeCCCcchhhccC--------------CCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCC
Q psy15138 15 AASVFETRIHERDDDLP--------------EASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCP 80 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~~~--------------~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~ 80 (320)
.+.++|+||.+++..+. ....+|.+++ |+++..+...+..+-...+...+.|.++++||+|+..
T Consensus 229 ~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vll--v~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~ 306 (439)
T 1mky_A 229 KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVI--VLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVV 306 (439)
T ss_dssp EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEE--EEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGST
T ss_pred EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEE--EEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCC
Confidence 46788999997665211 1223466666 8999988876654444556667889999999999975
Q ss_pred hhH--HHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHH
Q psy15138 81 PNV--LQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSL 127 (320)
Q Consensus 81 ~~~--le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~ 127 (320)
... .+++.+++...+.. ....+. +..+..+..+..++...+.+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~SA~~g~gv~~l~~~i~~~ 352 (439)
T 1mky_A 307 HREKRYDEFTKLFREKLYF--IDYSPL-IFTSADKGWNIDRMIDAMNLA 352 (439)
T ss_dssp TGGGCHHHHHHHHHHHCGG--GTTSCE-EECBTTTTBSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhcc--CCCCcE-EEEECCCCCCHHHHHHHHHHH
Confidence 432 44444444443221 111121 123345556666666665543
No 429
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.40 E-value=0.0008 Score=59.61 Aligned_cols=104 Identities=18% Similarity=0.061 Sum_probs=0.0
Q ss_pred ceEEEeCCCcchh----------hccCCCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHH
Q psy15138 15 AASVFETRIHERD----------DDLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVL 84 (320)
Q Consensus 15 ~~~~~d~pgh~~~----------~~~~~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~l 84 (320)
.+.++|+||+.+| ...-....+|.+++ |++++. .........-...+++|.++++||+|+......
T Consensus 53 ~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~--V~D~t~--~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i 128 (258)
T 3a1s_A 53 TINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVIL--VADSVN--PEQSLYLLLEILEMEKKVILAMTAIDEAKKTGM 128 (258)
T ss_dssp EEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEE--EEETTS--CHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTC
T ss_pred EEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEE--EeCCCc--hhhHHHHHHHHHhcCCCEEEEEECcCCCCccch
Q ss_pred HHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHH
Q psy15138 85 QDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLID 129 (320)
Q Consensus 85 e~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~ 129 (320)
....+++...+.-+.+. .+..+...++++...+.....
T Consensus 129 ~~~~~~l~~~lg~~vi~-------~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 129 KIDRYELQKHLGIPVVF-------TSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CBCHHHHHHHHCSCEEE-------CCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEE-------EEeeCCcCHHHHHHHHHHHhh
No 430
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.40 E-value=0.0017 Score=51.82 Aligned_cols=20 Identities=40% Similarity=0.456 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
+++++|+.|+|||||++.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999998
No 431
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.39 E-value=0.0037 Score=58.90 Aligned_cols=24 Identities=46% Similarity=0.779 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
-+++++|+.|+|||||++.|. |..
T Consensus 9 ~~I~vvG~~~~GKSTLi~~L~-~~~ 32 (403)
T 3sjy_A 9 VNIGVVGHVDHGKTTLVQAIT-GIW 32 (403)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHh-Ccc
Confidence 358999999999999999999 754
No 432
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.39 E-value=0.0018 Score=51.85 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
+++++|+.|+|||||++.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999998
No 433
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.39 E-value=0.0017 Score=53.48 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGE 226 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~ 226 (320)
+++++|++|+|||||++.+. +.
T Consensus 3 ki~v~G~~~~GKSsli~~l~-~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLT-GK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHh-Cc
Confidence 58999999999999999998 54
No 434
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.38 E-value=0.0041 Score=50.68 Aligned_cols=58 Identities=10% Similarity=-0.110 Sum_probs=36.8
Q ss_pred eEEEeCCCcchhhccCCCCccchhhhccceecCCCCchh-HHHHH-HHHHH-----cCCCcEEEEeCCCC
Q psy15138 16 ASVFETRIHERDDDLPEASPADHSMLQSKVGANAGIVGM-TKEHL-GLALA-----LSVPVFVVVTKIDM 78 (320)
Q Consensus 16 ~~~~d~pgh~~~~~~~~~~~~d~~~l~~vv~a~~g~~~~-t~~~l-~l~~~-----l~i~~~v~lnk~Dl 78 (320)
+.++|+||++++.-+ .++|.+++ |++++++..-. ....+ .+... -++|+++|.||+|+
T Consensus 56 l~i~Dt~G~~~~~~~---~~~d~~il--v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl 120 (178)
T 2iwr_A 56 VLIREEAGAPDAKFS---GWADAVIF--VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120 (178)
T ss_dssp EEEEECSSSCCHHHH---HHCSEEEE--EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTC
T ss_pred EEEEECCCCchhHHH---HhCCEEEE--EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 677899999986632 23677777 99988743211 11122 12222 25688888899998
No 435
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.38 E-value=0.0017 Score=53.87 Aligned_cols=20 Identities=30% Similarity=0.233 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
.++|.|+.||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~ 21 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLY 21 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999998
No 436
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.38 E-value=0.0013 Score=53.92 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHh
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
.-+++++|++|+|||||++.+.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 4469999999999999999998
No 437
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.37 E-value=0.0015 Score=53.29 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
.++|+|++||||||+.+.|+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999998
No 438
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.37 E-value=0.0014 Score=52.74 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
+++++|+.|+|||||++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 58999999999999999998
No 439
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.36 E-value=0.0015 Score=52.60 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGE 226 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~ 226 (320)
+++++|+.|+|||||++.+. +.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~-~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFV-ED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HS
T ss_pred EEEEECcCCCCHHHHHHHHH-cC
Confidence 58999999999999999998 44
No 440
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.36 E-value=0.002 Score=51.73 Aligned_cols=20 Identities=20% Similarity=0.489 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
+++++|+.|+|||||++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999887
No 441
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.35 E-value=0.002 Score=51.74 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHG 225 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G 225 (320)
+++++|+.|+|||||++.+..+
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999833
No 442
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.34 E-value=0.002 Score=51.99 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
+++++|++|+|||||++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 58999999999999999988
No 443
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.32 E-value=0.0021 Score=52.31 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
+++++|+.|+|||||++.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999998
No 444
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.31 E-value=0.00045 Score=57.09 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=55.9
Q ss_pred ceEEEeCCCcchhhc------cC----CCCccchhhhccceecCCCCchhHHHHHHHHHHcCCCcEEEEeCCCCCChhHH
Q psy15138 15 AASVFETRIHERDDD------LP----EASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVL 84 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~------~~----~~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~~~~l 84 (320)
.+.++|+||+++|.. +. ....+|.+++ |+++.. .....+.+..+...++|.+++.||+|+.....+
T Consensus 55 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~--v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 130 (188)
T 2wjg_A 55 KFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVN--IVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGI 130 (188)
T ss_dssp EEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEE--EEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTC
T ss_pred EEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEE--Eecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhccccccc
Confidence 477899999998831 00 0123566655 888764 122233444445567799999999998533211
Q ss_pred HHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHHcC
Q psy15138 85 QDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNG 131 (320)
Q Consensus 85 e~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~~~ 131 (320)
....+++...+. + ++ +..+..+.+.++++...+.....+.
T Consensus 131 ~~~~~~~~~~~~---~---~~-~~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 131 EIDVDKLEKILG---V---KV-VPLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp CCCHHHHHHHHT---S---CE-EECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHhC---C---Ce-EEEEecCCCCHHHHHHHHHHHHHhc
Confidence 111222322211 1 11 1122344556777766666554433
No 445
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.31 E-value=0.0016 Score=53.76 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=16.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHh
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
+..+.|.|++||||||+.+.|+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999997
No 446
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.31 E-value=0.0021 Score=52.38 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
+++++|+.|+|||||++.+.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999887
No 447
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.31 E-value=0.0016 Score=53.03 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=19.3
Q ss_pred cEEEEEcCCCChHHHHHHHHh
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~ 223 (320)
-+++|+|+.|+|||||++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~ 30 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFI 30 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999988
No 448
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.30 E-value=0.0018 Score=53.57 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.5
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcCC
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLTHGELD 228 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~~G~l~ 228 (320)
-+++|+|+.|+|||||++.+. |...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~-~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIY-SKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHH-HTSC
T ss_pred cEEEEECCCCCCHHHHHHHHH-hhcc
Confidence 358999999999999999998 6543
No 449
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.30 E-value=0.0018 Score=53.61 Aligned_cols=20 Identities=35% Similarity=0.428 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
+++|+|++||||||+.+.|+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999997
No 450
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.28 E-value=0.0021 Score=55.35 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHh
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
+.+++|+|++||||||+.+.|+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3568999999999999999998
No 451
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.28 E-value=0.0022 Score=54.28 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=19.6
Q ss_pred cEEEEEcCCCChHHHHHHHHh
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~ 223 (320)
.+++|+|+.||||||+.+.|.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999998
No 452
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.27 E-value=0.0021 Score=53.21 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=19.4
Q ss_pred cEEEEEcCCCChHHHHHHHHh
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~ 223 (320)
..++|+|++||||||+.+.|+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999997
No 453
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.26 E-value=0.0024 Score=53.83 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHh
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
+.+++|+|+.||||||+.+.|+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5679999999999999999998
No 454
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.26 E-value=0.0023 Score=54.73 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHh
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
+.+++|+|+.||||||+.+.|+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999998
No 455
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.25 E-value=0.002 Score=55.29 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=19.3
Q ss_pred cEEEEEcCCCChHHHHHHHHh
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~ 223 (320)
..+.|+||+||||||+.+.|+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999998
No 456
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.25 E-value=0.0019 Score=53.55 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLTHGE 226 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~~G~ 226 (320)
-+++|+|+.|+|||||++.+. +.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~-~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLT-KD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHH-HS
T ss_pred eEEEEECCCCCCHHHHHHHHH-hC
Confidence 358999999999999999998 44
No 457
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.24 E-value=0.0022 Score=56.25 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
+|+|.|++||||||+.+.|.
T Consensus 24 iI~I~G~~GSGKST~a~~L~ 43 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIV 43 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999997
No 458
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.23 E-value=0.0022 Score=52.13 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
+++|+|+.|+|||||++.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~ 27 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFA 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 58999999999999999998
No 459
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.23 E-value=0.0012 Score=62.96 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=29.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCCCceeee
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQ 236 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~ 236 (320)
+.+++++||+||||||++..|+ ..+.+..+.+.+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA-~~l~~~G~kVll 130 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLA-YFYKKRGYKVGL 130 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHH-HHHHHTTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHH-HHHHHcCCeEEE
Confidence 6679999999999999999999 888777676655
No 460
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.23 E-value=0.0024 Score=53.79 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHh
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
...++|.|++||||||+.+.|+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999997
No 461
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.22 E-value=0.0025 Score=51.17 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHG 225 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G 225 (320)
+++++|+.|+|||||++.+..+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998833
No 462
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.22 E-value=0.0025 Score=51.05 Aligned_cols=20 Identities=45% Similarity=0.557 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
+++++|++|+|||||++.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~ 21 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLK 21 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
No 463
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.21 E-value=0.0025 Score=52.33 Aligned_cols=20 Identities=40% Similarity=0.463 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
+++++|+.|+|||||++.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLI 25 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999998
No 464
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.21 E-value=0.002 Score=53.45 Aligned_cols=20 Identities=35% Similarity=0.675 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
+++|+|++|+|||||++.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~ 46 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFT 46 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 48999999999999999988
No 465
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.20 E-value=0.0021 Score=59.91 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=20.2
Q ss_pred ccCcEEEEEcCCCChHHHHHHHHh
Q psy15138 200 FLEIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 200 ~~g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
|.....+|+|||||||||++-.|.
T Consensus 23 f~~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 23 FEKGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHH
Confidence 444568999999999999998875
No 466
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.20 E-value=0.0026 Score=51.29 Aligned_cols=24 Identities=42% Similarity=0.612 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLTHGE 226 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~~G~ 226 (320)
-+++++|++|+|||||++.+..+.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999997333
No 467
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.20 E-value=0.0021 Score=53.86 Aligned_cols=22 Identities=45% Similarity=0.696 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGE 226 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~ 226 (320)
+++|+|++|+|||||++.+. |.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~-~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFG-GL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTC-CE
T ss_pred EEEEECCCCCCHHHHHHHHH-hc
Confidence 58999999999999999997 54
No 468
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.20 E-value=0.0022 Score=57.10 Aligned_cols=22 Identities=41% Similarity=0.472 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGE 226 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~ 226 (320)
+++|+|++|+|||||++.|. +.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~-~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLF-LT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHS-SS
T ss_pred EEEEECCCCCCHHHHHHHHh-CC
Confidence 48999999999999999987 54
No 469
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.0042 Score=61.89 Aligned_cols=29 Identities=24% Similarity=0.638 Sum_probs=24.2
Q ss_pred HHhcccCCccccccccccccCCCCCEEEEEe
Q psy15138 289 TFIDLAGHERYLKTTVFGMTGHVPDFGMLMH 319 (320)
Q Consensus 289 ~~l~l~gl~~~~~~~~~~LSG~~~~~~~l~v 319 (320)
.++|..|+.++....+.++++ .|.+++||
T Consensus 248 ~iiDTPG~e~f~~~~~~~~~~--aD~~llVV 276 (611)
T 3izq_1 248 TIVDAPGHRDFVPNAIMGISQ--ADMAILCV 276 (611)
T ss_dssp EEEECCSSSCHHHHHTTTSSC--CSEEEEEE
T ss_pred EEEECCCCcccHHHHHHHHhh--cCceEEEE
Confidence 467888888888888888887 89998876
No 470
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.19 E-value=0.016 Score=53.56 Aligned_cols=104 Identities=12% Similarity=0.095 Sum_probs=58.7
Q ss_pred ceEEEeCCCcchhhc----------c-CCCCccchhhhccceecCCCC--chhH-HHHH-HHHHHc-CCCcEEEEeCCCC
Q psy15138 15 AASVFETRIHERDDD----------L-PEASPADHSMLQSKVGANAGI--VGMT-KEHL-GLALAL-SVPVFVVVTKIDM 78 (320)
Q Consensus 15 ~~~~~d~pgh~~~~~----------~-~~~~~~d~~~l~~vv~a~~g~--~~~t-~~~l-~l~~~l-~i~~~v~lnk~Dl 78 (320)
.+.++|+||+.++.+ + .-...+|..++ |+++..+. .... .+-+ .+.... +.|.++|+||+|+
T Consensus 215 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ill--V~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl 292 (357)
T 2e87_A 215 RYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIY--IFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV 292 (357)
T ss_dssp EEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEE--EECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred eEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEE--EEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence 367889999976531 0 11234677766 99977643 2222 2222 333334 6799999999999
Q ss_pred CChhHHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHH
Q psy15138 79 CPPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLI 128 (320)
Q Consensus 79 ~~~~~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~ 128 (320)
.+...+++..+.... .. +++ +..+..+.++++++...+.+.+
T Consensus 293 ~~~~~~~~~~~~~~~----~~---~~~-~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 293 ADEENIKRLEKFVKE----KG---LNP-IKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp CCHHHHHHHHHHHHH----TT---CCC-EECBTTTTBTHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHh----cC---CCe-EEEeCCCCcCHHHHHHHHHHHH
Confidence 887655443332221 11 111 1123355667777777666554
No 471
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.19 E-value=0.0017 Score=54.19 Aligned_cols=74 Identities=11% Similarity=0.037 Sum_probs=0.0
Q ss_pred ceEEEeCCCcchhh--ccCCCCccchhhhccceecCC-----CCchhHHHHHHHHHHcCCCcEEEEeCCCCCC-----hh
Q psy15138 15 AASVFETRIHERDD--DLPEASPADHSMLQSKVGANA-----GIVGMTKEHLGLALALSVPVFVVVTKIDMCP-----PN 82 (320)
Q Consensus 15 ~~~~~d~pgh~~~~--~~~~~~~~d~~~l~~vv~a~~-----g~~~~t~~~l~l~~~l~i~~~v~lnk~Dl~~-----~~ 82 (320)
.+.++|+||+++ . ...-...+|.+++ |+++++ .......+-.......++|+++|.||+|+.. .+
T Consensus 77 ~~~l~Dt~G~~~-~~~~~~~~~~~d~iil--v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~ 153 (196)
T 2atv_A 77 SMEILDTAGQED-TIQREGHMRWGEGFVL--VYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTE 153 (196)
T ss_dssp EEEEEECCCCCC-CHHHHHHHHHCSEEEE--EEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHH
T ss_pred EEEEEECCCCCc-ccchhhhhccCCEEEE--EEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHH
Q ss_pred HHHHHHHHH
Q psy15138 83 VLQDTLKLL 91 (320)
Q Consensus 83 ~le~~l~~~ 91 (320)
..+++.+++
T Consensus 154 ~~~~~~~~~ 162 (196)
T 2atv_A 154 EGEKLATEL 162 (196)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
No 472
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.19 E-value=0.0026 Score=52.33 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
+++|+|+.|+|||||++.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~ 32 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYT 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999998
No 473
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.19 E-value=0.0025 Score=51.70 Aligned_cols=20 Identities=20% Similarity=0.517 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
+++|+|+.|+|||||++.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999987
No 474
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=96.19 E-value=0.0017 Score=63.56 Aligned_cols=63 Identities=19% Similarity=0.148 Sum_probs=43.1
Q ss_pred CceEEEeCCCcchhhccCC--CCccchhhhccceecCCCCchhHHHHHHHHHHcC--CCcEEEEeCCCCCC
Q psy15138 14 NAASVFETRIHERDDDLPE--ASPADHSMLQSKVGANAGIVGMTKEHLGLALALS--VPVFVVVTKIDMCP 80 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~~~~~--~~~~d~~~l~~vv~a~~g~~~~t~~~l~l~~~l~--i~~~v~lnk~Dl~~ 80 (320)
..+.++|+||+++|..+.- ...+|.+++ |+++..+ .....-+..++..+ +|.++|.||+|+..
T Consensus 98 ~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~--V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 98 CLFHFWDFGGQEIMHASHQFFMTRSSVYML--LLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENP 164 (535)
T ss_dssp CEEEEECCCSCCTTTTTCHHHHHSSEEEEE--EECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCT
T ss_pred EEEEEEECCcHHHHHHHHHHHccCCcEEEE--EEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCccc
Confidence 4588999999999982211 224666666 8988764 33333445555554 79999999999964
No 475
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.18 E-value=0.0033 Score=53.15 Aligned_cols=24 Identities=29% Similarity=0.648 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
+++|+|++|+|||||++.+..+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~~ 51 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGLF 51 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 589999999999999998873443
No 476
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.17 E-value=0.0028 Score=51.68 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=19.4
Q ss_pred cEEEEEcCCCChHHHHHHHHh
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~ 223 (320)
..++|+|+.||||||+.+.|+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999998
No 477
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.16 E-value=0.0019 Score=65.04 Aligned_cols=32 Identities=34% Similarity=0.418 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCC--CCcee
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGELDN--GRGHA 234 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l~~--~~G~i 234 (320)
+.+++|+|++|+|||||++.|. +...+ ..|.+
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~-~~~~~~~~~G~V 42 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALL-YKTGAKERRGRV 42 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH-HHTTSSSSCCCG
T ss_pred CcEEEEECCCCChHHHHHHHHH-HhcCCCCcccee
Confidence 6779999999999999999998 76554 45665
No 478
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.15 E-value=0.0026 Score=54.24 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
+++|+|+.||||||+.+.|+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999998
No 479
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=96.14 E-value=0.0022 Score=59.33 Aligned_cols=110 Identities=13% Similarity=0.013 Sum_probs=59.7
Q ss_pred CceEEEeCCCcchh----h-----ccCCCCccchhhhccceecCCC--Cchh--HHHHHHHHHH-----cCCCcEEEEeC
Q psy15138 14 NAASVFETRIHERD----D-----DLPEASPADHSMLQSKVGANAG--IVGM--TKEHLGLALA-----LSVPVFVVVTK 75 (320)
Q Consensus 14 ~~~~~~d~pgh~~~----~-----~~~~~~~~d~~~l~~vv~a~~g--~~~~--t~~~l~l~~~-----l~i~~~v~lnk 75 (320)
..+.++|+||+.+. . .+.....+|.+++ |++++.. ..+. ....+.-++. ...|.++|+||
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~--VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK 283 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVH--VIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANK 283 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEE--EEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEEC
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEE--EEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEEC
Confidence 35778899996441 1 1111233566666 9998752 2222 1222222222 35689999999
Q ss_pred CCCCChhHHHHHHHHHHHhhcCCCccccCccccccCCchhHHHHHHHHHHHHHHcCcc
Q psy15138 76 IDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLIDNGRG 133 (320)
Q Consensus 76 ~Dl~~~~~le~~l~~~~~~l~~~~~~~i~~kl~~~~gnyd~~~~l~~q~~~~~~~~~~ 133 (320)
+|+.... +.++++.+.+... .++ +..++.+.+.++++...+.+.+.+...
T Consensus 284 ~Dl~~~~---e~~~~l~~~l~~~----~~v-~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 284 MDMPEAA---ENLEAFKEKLTDD----YPV-FPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp TTSTTHH---HHHHHHHHHCCSC----CCB-CCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred ccCCCCH---HHHHHHHHHhhcC----CCE-EEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 9997653 2334444443211 111 113345666788888888777655443
No 480
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.14 E-value=0.0024 Score=59.19 Aligned_cols=25 Identities=40% Similarity=0.458 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
.-+++++|++|+|||||++.|+ |..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~-~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALT-TAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHC-SSC
T ss_pred CCEEEEECCCCCCHHHHHHHHh-CCC
Confidence 3468999999999999999999 754
No 481
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.14 E-value=0.0024 Score=55.94 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.7
Q ss_pred EEEEcCCCChHHHHHHHHhcCcCC
Q psy15138 205 VAVVGNVDAGKSTLLGVLTHGELD 228 (320)
Q Consensus 205 v~ivGpnGsGKSTLl~~l~~G~l~ 228 (320)
+.|.||+|+|||||++.|+ +.+.
T Consensus 48 vll~G~~GtGKT~la~~la-~~~~ 70 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIA-GEAK 70 (257)
T ss_dssp EEEECCTTSCHHHHHHHHH-HHHT
T ss_pred EEEECcCCCCHHHHHHHHH-HHcC
Confidence 7899999999999999999 6653
No 482
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.14 E-value=0.0049 Score=53.88 Aligned_cols=68 Identities=10% Similarity=-0.020 Sum_probs=42.2
Q ss_pred CceEEEeCCCcchhhcc--------CCCCccchhhhccceecCCCCchhHHHH-----HHHHHHcCCCcEEEEeCCCCCC
Q psy15138 14 NAASVFETRIHERDDDL--------PEASPADHSMLQSKVGANAGIVGMTKEH-----LGLALALSVPVFVVVTKIDMCP 80 (320)
Q Consensus 14 ~~~~~~d~pgh~~~~~~--------~~~~~~d~~~l~~vv~a~~g~~~~t~~~-----l~l~~~l~i~~~v~lnk~Dl~~ 80 (320)
..+.|+|+||..++... ... .| .+++.++++..+..+..... .......++|.++|+||+|+.+
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~--~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENL--PY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTS--SS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHH--hh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccc
Confidence 36889999999887522 112 34 44444777765554433221 1223345789999999999987
Q ss_pred hhHH
Q psy15138 81 PNVL 84 (320)
Q Consensus 81 ~~~l 84 (320)
....
T Consensus 186 ~~~~ 189 (262)
T 1yrb_A 186 EEEK 189 (262)
T ss_dssp HHHH
T ss_pred cccH
Confidence 6543
No 483
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.14 E-value=0.0027 Score=56.14 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
+++|+|++|+|||||++.|+ |..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~-g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALT-NAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHH-TTS
T ss_pred EEEEECCCCCCHHHHHHHHH-CCC
Confidence 58999999999999999999 763
No 484
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.13 E-value=0.0029 Score=51.73 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=19.3
Q ss_pred cEEEEEcCCCChHHHHHHHHh
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~ 223 (320)
-+++|+|+.|+|||||++.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~ 39 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 358999999999999999998
No 485
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.13 E-value=0.0029 Score=52.05 Aligned_cols=24 Identities=42% Similarity=0.707 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCc
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGE 226 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~ 226 (320)
.-+++++|+.|+|||||++.+. +.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~-~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFN-GE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHT-TC
T ss_pred eeEEEEECCCCCCHHHHHHHHh-cC
Confidence 3458999999999999999998 53
No 486
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.13 E-value=0.0015 Score=58.93 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=16.5
Q ss_pred cEEEEEcCCCChHHHHHHHHh
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~ 223 (320)
-.++|.||+||||||+.+.|.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~ 26 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFD 26 (290)
T ss_dssp CEEEEESCC---CCTHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999998
No 487
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.12 E-value=0.0018 Score=55.05 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
.-+++|+|++|+|||||++.|. +..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~-~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLC-NQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHT-TCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHh-CCC
Confidence 3469999999999999999999 653
No 488
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.12 E-value=0.0029 Score=55.36 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=19.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHh
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
+.+++|+||+||||||+.+.|+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3458999999999999999997
No 489
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.11 E-value=0.0028 Score=55.67 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcC
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLTHGEL 227 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~~G~l 227 (320)
-+|+|+|++|+|||||++.|. |..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~-~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSIL-RKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-TSC
T ss_pred eEEEEECCCCCCHHHHHHHHh-CCC
Confidence 358999999999999999998 653
No 490
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.11 E-value=0.0031 Score=51.40 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
+++++|++|+|||||++.+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~ 31 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFK 31 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 58999999999999999988
No 491
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.11 E-value=0.0029 Score=54.49 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
+++|.|++||||||+.+.|+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999998
No 492
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.10 E-value=0.0031 Score=51.66 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=19.3
Q ss_pred cEEEEEcCCCChHHHHHHHHh
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~ 223 (320)
-+++|+|+.|+|||||++.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999988
No 493
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.09 E-value=0.0031 Score=52.06 Aligned_cols=21 Identities=38% Similarity=0.423 Sum_probs=19.4
Q ss_pred cEEEEEcCCCChHHHHHHHHh
Q psy15138 203 IRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 203 ~~v~ivGpnGsGKSTLl~~l~ 223 (320)
-+++++|+.|+|||||++.+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~ 42 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLI 42 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 358999999999999999998
No 494
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.09 E-value=0.0043 Score=60.27 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=26.4
Q ss_pred EEEEcCCCChHHHHHHHHhcCcCCCCCceeeecc
Q psy15138 205 VAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKL 238 (320)
Q Consensus 205 v~ivGpnGsGKSTLl~~l~~G~l~~~~G~i~~~~ 238 (320)
+.|+||||+|||||+++|+ +... .+.+.++.
T Consensus 67 vLL~GppGtGKTtLaraIa-~~~~--~~~i~i~g 97 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVA-GEAR--VPFITASG 97 (499)
T ss_dssp EEEECSSSSSHHHHHHHHH-HHTT--CCEEEEEG
T ss_pred EEEECCCCCCHHHHHHHHH-HHhC--CCEEEEeh
Confidence 8999999999999999999 8764 66676654
No 495
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.09 E-value=0.0032 Score=51.08 Aligned_cols=20 Identities=35% Similarity=0.645 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
+++|+|+.|+|||||++.+.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~ 36 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFT 36 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999998
No 496
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.09 E-value=0.0028 Score=56.84 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHh
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
..+|+|+|++||||||+.+.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3469999999999999999997
No 497
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.08 E-value=0.0033 Score=51.60 Aligned_cols=20 Identities=40% Similarity=0.622 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
+++|+|+.|+|||||++.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~ 31 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFI 31 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999987
No 498
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.07 E-value=0.0033 Score=53.75 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHh
Q psy15138 202 EIRVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 202 g~~v~ivGpnGsGKSTLl~~l~ 223 (320)
+.+++|+|+.||||||+.+.|+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999999999998
No 499
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.07 E-value=0.0032 Score=51.31 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q psy15138 204 RVAVVGNVDAGKSTLLGVLT 223 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~ 223 (320)
+++++|+.|+|||||++.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~ 33 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFV 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 58999999999999999988
No 500
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.07 E-value=0.0034 Score=52.51 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy15138 204 RVAVVGNVDAGKSTLLGVLTHGE 226 (320)
Q Consensus 204 ~v~ivGpnGsGKSTLl~~l~~G~ 226 (320)
+++|+|+.|+|||||++.+. +.
T Consensus 10 ki~v~G~~~~GKSsli~~l~-~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYA-DD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHH-TC
T ss_pred EEEEECCCCCCHHHHHHHHh-cC
Confidence 58999999999999999998 44
Done!