RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15138
(320 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 4e-09
Identities = 52/273 (19%), Positives = 90/273 (32%), Gaps = 106/273 (38%)
Query: 6 DQTPCTAENAASVFETRIHERDDDLPEASPADHSMLQSKVGANAGIVGMTKE-------- 57
+ P T+ + + ++ E ++ +P SP ML I +T+E
Sbjct: 312 EAYPNTSLPPSILEDSL--ENNEGVP--SP----ML--------SISNLTQEQVQDYVNK 355
Query: 58 ---HLGLALALSVPVF-----VVVTKIDMCPPNVLQDTLKLLVRILKSP-GC-------- 100
HL + + + +VV+ PP L L L +R K+P G
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSG----PPQSLY-GLNLTLRKAKAPSGLDQSRIPFS 410
Query: 101 -RKVPVMNC-----------LISPTEEQF--DLLQKKI----KSLIDNGRGETIYDIGIG 142
RK+ N L+ P + DL++ + K + +YD G
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI-----QIPVYDTFDG 465
Query: 143 QDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQYLLRKRV---ESQD 199
D L+ L+ ++ ++ ++R V +
Sbjct: 466 SD-----------------LRVLSGSISER--IVDC-----------IIRLPVKWETTTQ 495
Query: 200 FLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRG 232
F + G G ++ LGVLTH D G G
Sbjct: 496 FKATHILDFG---PGGASGLGVLTHRNKD-GTG 524
Score = 47.0 bits (111), Expect = 6e-06
Identities = 51/313 (16%), Positives = 92/313 (29%), Gaps = 97/313 (30%)
Query: 34 SPAD-HSMLQSKVGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLV 92
+P + S L+ G + G+V + +A S F ++ + +L
Sbjct: 259 TPGELRSYLKGATGHSQGLVTA----VAIAETDSWESFF----------VSVRKAITVLF 304
Query: 93 RILKSPGCR---KVPVMNCLISPTEEQF----------------DLLQKKIKSLID--NG 131
I G R P + + P+ + +L Q++++ ++ N
Sbjct: 305 FI----GVRCYEAYPNTS--LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 132 RGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQ--- 188
+ I NG V + +L + LR+ K +GL Q
Sbjct: 359 HLPAGKQVEISL---VNG--AKNL---VVS--GPPQSLYGLNLTLRKAKAPSGL-DQSRI 407
Query: 189 -YLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMES 247
+ RK S FL + F H H +
Sbjct: 408 PFSERKLKFSNRFLPVASP--------------------------------F-HSHLLVP 434
Query: 248 GRTSSVGNDIL--GFDSVGNVVNKPEHGSLDWVKICERSAKVITFI-DLAGHERYL--KT 302
+ + D++ + P + + D + S + I D T
Sbjct: 435 A-SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT 493
Query: 303 TVFGMTGHVPDFG 315
T F T H+ DFG
Sbjct: 494 TQFKAT-HILDFG 505
Score = 33.1 bits (75), Expect = 0.16
Identities = 40/197 (20%), Positives = 58/197 (29%), Gaps = 62/197 (31%)
Query: 132 RGET-IYDI-GIGQDGGENGLKPDE-------YEASVATL-QSLATTLEADCVLLRQRKL 181
G + I G GQ ++ +E Y V L + A TL L+R
Sbjct: 151 EGNAQLVAIFG-GQGNTDDYF--EELRDLYQTYHVLVGDLIKFSAETLSE---LIRTTLD 204
Query: 182 DNGLTGQYL-----LRKRVE--SQDFL-EIRVAVVGN--------VDAGKSTLLGVLTHG 225
+ Q L L +D+L I ++ V K LLG T G
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK--LLG-FTPG 261
Query: 226 ELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSA 285
EL R L G + ++ + + W
Sbjct: 262 EL-------RSYL--------KG-ATGHSQGLV----TAVAIA----ETDSWESFFVSVR 297
Query: 286 KVIT---FIDLAGHERY 299
K IT FI + +E Y
Sbjct: 298 KAITVLFFIGVRCYEAY 314
Score = 32.7 bits (74), Expect = 0.21
Identities = 17/129 (13%), Positives = 41/129 (31%), Gaps = 32/129 (24%)
Query: 10 CTA-----ENAASVFETRIHERDDDLPEASPADHSMLQSKVGANAGIVGMTKEHLGLALA 64
A E+ V + R + A P D +N G++ + + + +
Sbjct: 1772 SLADVMSIESLVEV----VFYRGMTMQVAVPRD-----ELGRSNYGMIAINPGRVAASFS 1822
Query: 65 LSVPVFVVVTKIDMCPPNVLQ---------------DT--LKLLVRILKSPGCRKVPVMN 107
+ VV ++ +++ D L + +L +K+ ++
Sbjct: 1823 QEA-LQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIE 1881
Query: 108 CLISPTEEQ 116
S + E+
Sbjct: 1882 LQKSLSLEE 1890
Score = 30.0 bits (67), Expect = 1.2
Identities = 48/301 (15%), Positives = 81/301 (26%), Gaps = 130/301 (43%)
Query: 22 RIHERDDDLPEASPADHSMLQSKV--GANAGIVGMTKEH----LGL------AL-ALSVP 68
RI E + + D + K+ N T L AL +
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 69 VFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQFDLLQKKIKSLI 128
F LKS G + P + F
Sbjct: 1743 AF----------------------EDLKSKG----------LIPADATF----------- 1759
Query: 129 DNGRGETIYDIG--IGQDGGENGLKPDEYEA--SVATLQSLATTLEADCVLLRQRKLDNG 184
G +G EY A S+A + S+ + +E ++ R G
Sbjct: 1760 ----------AGHSLG-----------EYAALASLADVMSIESLVE----VVFYR----G 1790
Query: 185 LTGQYLLRKRVESQDFLEI------RVAVVGNVDAGKSTLLGVLTH-GEL-----DNGRG 232
+T Q + + + + RVA + +A + + V G L N
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN--- 1847
Query: 233 HARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFID 292
+ D+ D+V NV L+++K+ + I I+
Sbjct: 1848 -------------VENQQYVAAGDLRALDTVTNV--------LNFIKL-----QKIDIIE 1881
Query: 293 L 293
L
Sbjct: 1882 L 1882
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 1e-07
Identities = 52/326 (15%), Positives = 89/326 (27%), Gaps = 97/326 (29%)
Query: 11 TAENAASVFETRIHERDDDLPEASPADHSMLQSKVGANAGIVGMTKEHLG--------LA 62
T + S+ + R DLP + S + ++ L
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE------SIRDGLATWDNWKHVNC 352
Query: 63 LALSVPVFVVVTKIDMC----PPNVLQDTLKLLVRILKSPGCRKVP--VMNCLI---SPT 113
L+ T I+ P + L + P +P ++ LI
Sbjct: 353 DKLT-------TIIESSLNVLEPAEYRKMFDRLS-VF--PPSAHIPTILL-SLIWFDVIK 401
Query: 114 EEQFDLLQK-KIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYEASVATLQSLATTLEAD 172
+ ++ K SL++ E+ I P Y LE
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISI------------PSIY-------------LELK 436
Query: 173 CVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRG 232
L + L + Y + K +S D + +D + +G H L N
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPP------YLDQYFYSHIG--HH--LKNIEH 486
Query: 233 HARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFID 292
R LFR L F + K H S W + + T
Sbjct: 487 PERMTLFRMVF--------------LDFRFLE---QKIRHDSTAW---NASGSILNTLQQ 526
Query: 293 LAGHERYLKTTVFGMTGHVPDFGMLM 318
L ++ Y + + P + L+
Sbjct: 527 LKFYKPY-------ICDNDPKYERLV 545
Score = 51.4 bits (122), Expect = 2e-07
Identities = 39/262 (14%), Positives = 83/262 (31%), Gaps = 64/262 (24%)
Query: 67 VPVFVVVTKIDM-CPPNVLQDTLKLLVRILKSPGCRKVPVMNCLISPTEEQ-----FDLL 120
+ VF + C +D + IL + ++S F L
Sbjct: 22 LSVFEDAFVDNFDC-----KDVQDMPKSILSKEEIDHI-----IMSKDAVSGTLRLFWTL 71
Query: 121 QKKIKSLIDNGRGETIYDIGIGQDGGENGLKPDEYE---ASVATLQSLATTLEADCVLLR 177
K E + + E L+ + Y+ + + T + ++ + +
Sbjct: 72 LSK---------QEEMVQKFV-----EEVLRIN-YKFLMSPIKT-EQRQPSMMTRMYIEQ 115
Query: 178 QRKLDNGLTGQYLLRKRVES-QDFLEIR-----------VAVVGNVDAGKSTL-LGVLTH 224
+ +L N Q + V Q +L++R V + G + +GK+ + L V
Sbjct: 116 RDRLYND--NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC-- 171
Query: 225 GELDNGRGHARQKLFRHK-HEMESGRTSSVGNDI-----LGFDSVGNVVNKPEHGSLDWV 278
+ Q K + +S + L + N ++ +H S +
Sbjct: 172 ------LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 279 KICERSAKVITFIDLAGHERYL 300
+I A++ + +E L
Sbjct: 226 RIHSIQAELRRLLKSKPYENCL 247
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 39.7 bits (93), Expect = 0.001
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 45 VGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKS 97
V A G T EH+ + ++P+ VV+TK D ++ T ++ IL+S
Sbjct: 104 VDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQS 156
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 36.3 bits (84), Expect = 0.008
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 68 PVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVMNCLIS-PTEEQFDLLQKKIKS 126
+ + KID C + L KLL++ + + + S T + +
Sbjct: 144 SIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS--FSTLTGVGVEQAKITACE 201
Query: 127 LIDNGRGETI 136
L+ N + E+I
Sbjct: 202 LLKNDQAESI 211
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 35.8 bits (82), Expect = 0.014
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 191 LRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLT 223
+ ++ D + VAV G +GKS+ + L
Sbjct: 58 ISDALKEIDSSVLNVAVTGETGSGKSSFINTLR 90
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 35.7 bits (81), Expect = 0.020
Identities = 23/157 (14%), Positives = 44/157 (28%), Gaps = 27/157 (17%)
Query: 160 ATLQSLATTLEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKST-- 217
T+ ++ L + +T K ++ F R+ V+G++ GKST
Sbjct: 33 ETINKAELAGDSSSGKLSLERDIEDITI---ASKNLQQGVF---RLLVLGDMKRGKSTFL 86
Query: 218 --LLG----------------VLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILG 259
L+G VL +G H + + ++ + +
Sbjct: 87 NALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146
Query: 260 FDSVGNVVNKPEHGSLDWVKI-CERSAKVITFIDLAG 295
V+ K I +D G
Sbjct: 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPG 183
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 34.5 bits (79), Expect = 0.041
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 68 PVFVVVTKIDMCPPNVLQDTLKL-LVRILKSPGCRKVPVMNCLISPTE-EQFDLLQKKIK 125
P+ +V K D+ P +V L + R+ + G V V L+S + + + I
Sbjct: 100 PILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVC--LVSAAKGIGMAKVMEAIN 157
Query: 126 SLIDNGRGETIYDIGI 141
+ G +Y +G
Sbjct: 158 RYREGGD---VYVVGC 170
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 33.9 bits (78), Expect = 0.064
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 203 IRVAVVGNVDAGKSTLLG 220
+ V+G+VDAGKSTL+G
Sbjct: 168 LSFVVLGHVDAGKSTLMG 185
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase;
beta barrel, switch domain, heterodimer, pyrophosphate,
G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV}
SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 434
Score = 33.8 bits (78), Expect = 0.071
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 14/109 (12%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHK---HEMESGRTSSVGNDILG 259
+R GNVD GKSTL+G L H + ++ +S ++ + G+D+
Sbjct: 25 LRFLTCGNVDDGKSTLIGRLLHDS---------KMIYEDHLEAITRDSKKSGTTGDDVDL 75
Query: 260 FDSVGNVVNKPEHG-SLDWVKICERSAK-VITFIDLAGHERYLKTTVFG 306
V + + E G ++D +AK D GHE+Y + G
Sbjct: 76 ALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATG 124
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain,
beta-barrel, translational GTPase, D structural
genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Length = 483
Score = 33.8 bits (78), Expect = 0.080
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 203 IRVAVVGNVDAGKSTLLG 220
+ V+G+VDAGKSTL+G
Sbjct: 34 LSFVVLGHVDAGKSTLMG 51
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 33.1 bits (76), Expect = 0.083
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 205 VAVVGNVDAGKSTLLGVLTHGELDNGRGHAR 235
+AV G+ AGK++LL ++ GEL+ G +
Sbjct: 67 LAVAGSTGAGKTSLLMMIM-GELEPSEGKIK 96
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 32.9 bits (76), Expect = 0.094
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 205 VAVVGNVDAGKSTLLGVLTHGELDNGRGH 233
VAVVG V GKS+LL L E+D GH
Sbjct: 34 VAVVGQVGCGKSSLLSALL-AEMDKVEGH 61
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 33.6 bits (77), Expect = 0.097
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 203 IRVAVVGNVDAGKSTLLG 220
+ + V G+VD+GKST+LG
Sbjct: 178 VHLVVTGHVDSGKSTMLG 195
>1f60_A Elongation factor EEF1A; protein-protein complex, translation;
1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1
c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Length = 458
Score = 33.5 bits (77), Expect = 0.097
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 20/122 (16%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTH--GELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGF 260
I V V+G+VD+GKST G L + G +D +K + E+ G+ S +L
Sbjct: 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDK---RTIEKFEKEAAEL--GKGSFKYAWVL-- 60
Query: 261 DSVGNVVNKPEHGSLDWVKI----CERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGM 316
D K E + I E +T ID GH ++K + G + D +
Sbjct: 61 DK-----LKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTS--QADCAI 113
Query: 317 LM 318
L+
Sbjct: 114 LI 115
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 32.9 bits (76), Expect = 0.098
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 205 VAVVGNVDAGKSTLLGVLTHGELDNGRGH 233
+AV G+ AGK++LL ++ GEL+ G
Sbjct: 37 LAVAGSTGAGKTSLLMMIM-GELEPSEGK 64
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase,
EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8
Length = 408
Score = 33.0 bits (76), Expect = 0.12
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 11/101 (10%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFD 261
E+ + +VG+VD GK++L LT D RH E+ G + +G
Sbjct: 8 EVNIGMVGHVDHGKTSLTKALTGVWTD-----------RHSEELRRGISIRLGYADCEIR 56
Query: 262 SVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKT 302
+ ++F+D GHE + T
Sbjct: 57 KCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMAT 97
Score = 29.2 bits (66), Expect = 1.8
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 55 TKEHLGLALALSVPVFVVV-TKIDMCPPNVLQDTLKLLVRILKSPGCRKVPV 105
TKEHL L + ++V KID+ ++ + + +K P+
Sbjct: 123 TKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPI 174
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit;
translation termination, peptide release, GTPase,
translatio; 2.35A {Schizosaccharomyces pombe} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Length = 467
Score = 32.7 bits (75), Expect = 0.14
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 203 IRVAVVGNVDAGKSTLLGVL 222
+ + +G+VDAGKSTL G +
Sbjct: 44 VNIVFIGHVDAGKSTLGGNI 63
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 32.7 bits (74), Expect = 0.20
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 204 RVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEME 246
R + G GKSTL+ + +G++D + +H+++
Sbjct: 463 RYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDID 505
Score = 29.6 bits (66), Expect = 1.9
Identities = 16/24 (66%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Query: 204 RVAVVGNVDAGKSTLLGVLTHGEL 227
R+AV+G AGKSTL+ VLT GEL
Sbjct: 701 RIAVIGPNGAGKSTLINVLT-GEL 723
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus
abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A*
1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Length = 410
Score = 32.2 bits (74), Expect = 0.22
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFD 261
E+ + +VG+VD GK+TL LT D H E+ G T +G
Sbjct: 10 EVNIGMVGHVDHGKTTLTKALTGVWTD-----------THSEELRRGITIKIGFADAEIR 58
Query: 262 SVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKT 302
N + + ++FID GHE + T
Sbjct: 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTT 99
Score = 28.4 bits (64), Expect = 3.7
Identities = 7/52 (13%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 55 TKEHLGLALALSVPVFVVV-TKIDMCPPNVLQDTLKLLVRILKSPGCRKVPV 105
T+EHL + ++ KI++ + + + ++ P+
Sbjct: 125 TREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPI 176
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase,
alpha/beta structure, protein biosynthesis, translation;
HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Length = 435
Score = 32.3 bits (74), Expect = 0.23
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 203 IRVAVVGNVDAGKSTLLGVL 222
+ + V+G+VD GKSTL+G L
Sbjct: 7 LNLIVIGHVDHGKSTLVGRL 26
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 32.3 bits (73), Expect = 0.25
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 203 IR-VAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGR 249
+R ++V+ +VD GKSTL L A + F + E R
Sbjct: 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQER 66
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 31.8 bits (73), Expect = 0.27
Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 13/79 (16%)
Query: 167 TTLEADCVLLRQR------KLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLG 220
+E+ ++R +L++ + + + + + +VG ++GK++L
Sbjct: 140 YGVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRNNI--PSIGIVGYTNSGKTSLFN 197
Query: 221 VLTHGELDNGRGHARQKLF 239
LT KLF
Sbjct: 198 SLTGLTQ-----KVDTKLF 211
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 31.5 bits (71), Expect = 0.39
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 68 PVFVVVTKIDMCPPNVLQDTLKLLVR-ILKSPGCRKVPVMNCLISPTEEQ-FDLLQKKIK 125
V +V K D+ P +V D +K +R K G + V LIS + Q L I+
Sbjct: 98 KVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVF--LISAAKGQGIAELADAIE 155
Query: 126 SLIDNGRGETIYDIGI 141
+Y +G
Sbjct: 156 YYRGGKD---VYVVGC 168
Score = 26.9 bits (59), Expect = 9.8
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHA 234
V VVG + GKST + + D
Sbjct: 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVI 192
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 29.8 bits (68), Expect = 0.79
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLT 223
+A++GN + GKST+ LT
Sbjct: 3 SYEIALIGNPNVGKSTIFNALT 24
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 30.0 bits (68), Expect = 0.92
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLT 223
++ + ++GN ++GK+TL LT
Sbjct: 3 KLTIGLIGNPNSGKTTLFNQLT 24
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei}
Length = 370
Score = 29.9 bits (68), Expect = 1.0
Identities = 5/25 (20%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 55 TKEHLGLALALSVPVFVVV-TKIDM 78
T E + L ++ T+ D
Sbjct: 100 TGECIIALDLLGFKHGIIALTRSDS 124
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 29.6 bits (67), Expect = 1.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 203 IRVAVVGNVDAGKSTLLGVLT 223
++GN + GK+TL LT
Sbjct: 2 THALLIGNPNCGKTTLFNALT 22
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 29.4 bits (67), Expect = 1.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLT 223
+A++GN + GKST+ LT
Sbjct: 7 SYEIALIGNPNVGKSTIFNALT 28
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2
inhibitor, clara cell phospholipid-binding protein,
progesterone binding; HET: PCB; NMR {Rattus norvegicus}
SCOP: a.101.1.1
Length = 96
Score = 28.1 bits (62), Expect = 1.2
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 76 IDMCPPNVLQDTLKLLVRILKSPGCRK 102
+D P + +KL +IL SP C +
Sbjct: 66 VDTLPQETRINIVKLTEKILTSPLCEQ 92
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 29.2 bits (65), Expect = 1.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 204 RVAVVGNVDAGKSTLLGVL 222
++A+ G V AGKST+ +
Sbjct: 2 KIAIFGTVGAGKSTISAEI 20
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 29.6 bits (67), Expect = 1.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLT 223
++VA+ G + GK++L LT
Sbjct: 5 MVKVALAGCPNVGKTSLFNALT 26
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 29.8 bits (68), Expect = 1.4
Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 4/19 (21%)
Query: 203 IRVAVVG--NVDAGKSTLL 219
I+VA+VG NV GKSTL
Sbjct: 181 IKVAIVGRPNV--GKSTLF 197
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 29.2 bits (66), Expect = 1.6
Identities = 7/21 (33%), Positives = 16/21 (76%)
Query: 203 IRVAVVGNVDAGKSTLLGVLT 223
+A++GN ++GK++L ++T
Sbjct: 4 TEIALIGNPNSGKTSLFNLIT 24
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 29.4 bits (67), Expect = 1.6
Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 4/19 (21%)
Query: 203 IRVAVVG--NVDAGKSTLL 219
I+ ++G NV GKS+L+
Sbjct: 176 IQFCLIGRPNV--GKSSLV 192
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 29.4 bits (67), Expect = 1.7
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 15/76 (19%)
Query: 152 PDEYEASVATLQSLATTLEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLE-IRVAVVGN 210
PDE E + + + ++ +L G LL +R+ +VG
Sbjct: 206 PDEIETNTGEVVTRLERIKEKL----TEELKKADAGI-LLN---------RGLRMVIVGK 251
Query: 211 VDAGKSTLLGVLTHGE 226
+ GKSTLL L + +
Sbjct: 252 PNVGKSTLLNRLLNED 267
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid
herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A*
1p75_A*
Length = 334
Score = 28.9 bits (64), Expect = 1.9
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 203 IRVAVVGNVDAGKSTLLGVL 222
+R+ + G GKST V+
Sbjct: 8 VRIYLDGVYGIGKSTTGRVM 27
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 28.3 bits (64), Expect = 2.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTHGE 226
++V + G +AGKS+LL L E
Sbjct: 5 MKVVIAGRPNAGKSSLLNALAGRE 28
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 28.5 bits (63), Expect = 2.3
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 204 RVAVVGNVDAGKSTLLGVL 222
V + GN+ +GK+T L
Sbjct: 22 TVLIEGNIGSGKTTYLNHF 40
>3go9_A Insulinase family protease; IDP00573, structural genomics, for
structural genomics of infectious diseases, csgid, HYDR;
HET: MSE; 1.62A {Yersinia pestis}
Length = 492
Score = 29.1 bits (65), Expect = 2.5
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 158 SVATLQSLATTLEADCVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAV-VGNVD 212
+ A+ A L+ D +Q KLDNG + LL D +E+R+ V G++
Sbjct: 9 AAASNNVQAEALQPDPAW-QQGKLDNGFS-WQLLATPQRPSDRIELRLIVNTGSLS 62
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 28.6 bits (63), Expect = 2.5
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 204 RVAVVGNVDAGKSTLLGVL 222
R+++ GN+ GKST + +L
Sbjct: 4 RLSIEGNIAVGKSTFVKLL 22
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 28.7 bits (63), Expect = 2.5
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 204 RVAVVGNVDAGKSTLLGVL 222
++++ GN+ AGKST + +L
Sbjct: 26 KISIEGNIAAGKSTFVNIL 44
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 28.4 bits (64), Expect = 2.9
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 192 RKRVESQDFLEIRVAVVG--NVDAGKSTLLGVLTH 224
R R + IR ++G NV GKSTL+ L
Sbjct: 110 RMRAKGVKPRAIRALIIGIPNV--GKSTLINRLAK 142
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger,
initiate translation, tRNA binding, mRNA bindin binding;
HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB:
3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A*
3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Length = 403
Score = 28.8 bits (65), Expect = 2.9
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 55 TKEHLGLALALSVPVFVVV-TKIDMCPPNVLQDTLKLLVRILKSPGCRKVPV 105
T+EH + V ++V K+D+ + + + K VP+
Sbjct: 117 TREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPI 168
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus
rattus} SCOP: a.101.1.1
Length = 77
Score = 26.6 bits (58), Expect = 2.9
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 76 IDMCPPNVLQDTLKLLVRILKSPGCRK 102
+D P + +KL +IL SP C +
Sbjct: 47 VDTLPQETRINIVKLTEKILTSPLCEQ 73
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 27.9 bits (63), Expect = 3.1
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGE 226
E+ + +VG +GK+T + V+ G+
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQ 46
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 28.7 bits (65), Expect = 3.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTHGE 226
+ + G +AGKSTLL L E
Sbjct: 234 VSTVIAGKPNAGKSTLLNTLLGQE 257
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 28.2 bits (64), Expect = 3.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTHGE 226
++VA+VG + GKS+LL + +
Sbjct: 225 LKVAIVGRPNVGKSSLLNAWSQSD 248
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 28.2 bits (64), Expect = 3.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 205 VAVVGNVDAGKSTLL 219
+A+VG + GKSTLL
Sbjct: 11 IAIVGRPNVGKSTLL 25
>3o3r_A Aldo-keto reductase family 1, member B7; aldose reductase like
protein, AKR1B14, oxidoreductase; HET: NAP; 1.86A
{Rattus norvegicus} PDB: 3qkz_A*
Length = 316
Score = 27.9 bits (63), Expect = 4.0
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 89 KLLVRILKSPGCRKVPVMN 107
+ R+L PG + PV N
Sbjct: 165 FQIERLLNKPGLKHKPVTN 183
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 27.8 bits (63), Expect = 4.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 205 VAVVGNVDAGKSTLL 219
VA+VG + GKSTLL
Sbjct: 13 VAIVGKPNVGKSTLL 27
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 27.8 bits (63), Expect = 4.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 205 VAVVGNVDAGKSTLL 219
VA+VG + GKSTLL
Sbjct: 10 VAIVGKPNVGKSTLL 24
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 27.6 bits (62), Expect = 4.8
Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 189 YLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDN 229
+L+K + + E+R+ ++G +AGK+T+L ++D
Sbjct: 7 TILKKMKQKER--ELRLLMLGLDNAGKTTILKKFNGEDVDT 45
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 27.2 bits (61), Expect = 5.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 45 VGANAGIVGMTKEHLGLALALSVPVFVVVTKID 77
V A+ G++ T E + A A +VP+ V + K+D
Sbjct: 86 VAADDGVMPQTVEAINHAKAANVPIIVAINKMD 118
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 27.8 bits (61), Expect = 5.4
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 204 RVAVVGNVDAGKSTLLGVLTHGELDNGRGH 233
RV +VG GK++L L L
Sbjct: 140 RVVIVGGSQTGKTSLSRTLCSYALKFNAYQ 169
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix,
structural; 1.70A {Homo sapiens}
Length = 86
Score = 26.0 bits (58), Expect = 5.5
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 226 ELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGF 260
E DN + R K + E + N + F
Sbjct: 22 ERDNLAEDIMR--LREKLQEEMLQREEAENTLQSF 54
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative,
no structural genomics consortium, NESG, structural
protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Length = 119
Score = 26.4 bits (59), Expect = 5.7
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 226 ELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGF 260
E DN + R K + E + N + F
Sbjct: 42 ERDNLAEDIMR--LREKLQEEMLQREEAENTLQSF 74
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 28.0 bits (62), Expect = 6.0
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 45 VGANAGIVGMTKEHLGLALALSVPVFVV-VTKIDM 78
V A G + T+EH+ L + VP +V + K DM
Sbjct: 390 VAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDM 424
>3buv_A 3-OXO-5-beta-steroid 4-dehydrogenase; 5-beta-reductase, catalytic
tetrad, hepes, NADP, bIle catabolism, disease mutation,
lipid metabolism; HET: NAP EPE; 1.35A {Homo sapiens}
PDB: 3bur_A* 3bv7_A* 3caq_A* 3cas_A* 3cav_A* 3g1r_A*
3cot_A* 3dop_A* 3cmf_A* 3uzx_A* 3uzw_A* 3uzy_A* 3uzz_A*
Length = 326
Score = 27.5 bits (62), Expect = 6.6
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 87 TLKLLVRILKSPGCRKVPVMN 107
+ L IL PG + PV N
Sbjct: 172 NRRQLELILNKPGLKHKPVSN 192
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 26.9 bits (60), Expect = 6.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGEL 227
++ +G +AGK+TLL +L L
Sbjct: 25 TGKLVFLGLDNAGKTTLLHMLKDDRL 50
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 27.0 bits (60), Expect = 7.1
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 185 LTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGE 226
+G L + + Q + ++ VVG+ GK+ LL V + E
Sbjct: 8 SSGVDLGTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDE 49
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 26.8 bits (60), Expect = 7.4
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGEL 227
+IRV ++G +AGK+++L L G++
Sbjct: 22 KIRVLMLGLDNAGKTSILYRLHLGDV 47
>1us0_A Aldose reductase; oxidoreductase, NADP, IDD594; HET: NDP LDT CIT;
0.66A {Homo sapiens} SCOP: c.1.7.1 PDB: 1pwl_A* 1t41_A*
1pwm_A* 1x96_A* 1x97_A* 1x98_A* 1z89_A* 1z8a_A* 2dux_A*
2duz_A* 2dv0_A* 2fz8_A* 2fz9_A* 2fzb_A* 2fzd_A* 2hv5_A*
2hvn_A* 2hvo_A* 2i16_A* 2i17_A* ...
Length = 316
Score = 27.1 bits (61), Expect = 7.6
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 89 KLLVRILKSPGCRKVPVMN 107
+ IL PG + P +N
Sbjct: 165 LQVEMILNKPGLKYKPAVN 183
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 27.3 bits (61), Expect = 7.8
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 205 VAVVGNVDAGKSTLLGVLT 223
+ V G + GKS+ + L
Sbjct: 37 IVVAGRRNVGKSSFMNALV 55
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 27.0 bits (60), Expect = 8.0
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGEL 227
+ + + G ++GK++LL +LT +
Sbjct: 12 QPSIIIAGPQNSGKTSLLTLLTTDSV 37
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 26.9 bits (60), Expect = 8.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLT 223
VA+VGN + GK+T+ LT
Sbjct: 3 LKTVALVGNPNVGKTTIFNALT 24
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 26.6 bits (59), Expect = 8.3
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGEL 227
+ + + G ++GK++LL +LT +
Sbjct: 48 QPSIIIAGPQNSGKTSLLTLLTTDSV 73
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 26.8 bits (60), Expect = 8.3
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGEL 227
++ +G +AGK+TLL +L + L
Sbjct: 23 HGKLLFLGLDNAGKTTLLHMLKNDRL 48
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 26.4 bits (59), Expect = 8.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGELDN 229
E+R+ ++G AGK+T+L L GE+
Sbjct: 7 EMRILILGLDGAGKTTILYRLQVGEVVT 34
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 26.5 bits (59), Expect = 9.0
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 184 GLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDN 229
G + K S E+R+ ++G AGK+T+L L GE+
Sbjct: 2 GNIFSSMFDKLWGSNK--ELRILILGLDGAGKTTILYRLQIGEVVT 45
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 26.4 bits (59), Expect = 9.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGELDN 229
E+R+ ++G +AGK+TLL L ++ +
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLASEDISH 43
>1afs_A 3-alpha-HSD, 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase,
NAD; HET: NAP TES; 2.50A {Rattus norvegicus} SCOP:
c.1.7.1 PDB: 1lwi_A*
Length = 323
Score = 26.7 bits (60), Expect = 9.5
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 87 TLKLLVRILKSPGCRKVPVMN 107
+ L RIL PG + PV N
Sbjct: 169 NCRQLERILNKPGLKYKPVCN 189
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 26.7 bits (59), Expect = 9.6
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 68 PVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPV 105
P VV+ KID+ + +K L + +K G + +
Sbjct: 282 PFLVVINKIDVADE----ENIKRLEKFVKEKGLNPIKI 315
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 26.6 bits (59), Expect = 9.7
Identities = 16/98 (16%), Positives = 26/98 (26%), Gaps = 24/98 (24%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFD 261
++ G +GK+T L + + +G E RT L FD
Sbjct: 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSL------ATEDERT-------LFFD 60
Query: 262 SVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERY 299
+ G + K + G Y
Sbjct: 61 -----FLPLDIGEVKGFKT------RFHLYTVPGQVFY 87
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 26.6 bits (59), Expect = 9.9
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 192 RKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGE 226
R R + ++ +VG+ GK++L+ T
Sbjct: 10 RGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNG 44
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.395
Gapped
Lambda K H
0.267 0.0688 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,910,248
Number of extensions: 302354
Number of successful extensions: 935
Number of sequences better than 10.0: 1
Number of HSP's gapped: 926
Number of HSP's successfully gapped: 113
Length of query: 320
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 226
Effective length of database: 4,077,219
Effective search space: 921451494
Effective search space used: 921451494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.8 bits)