RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15138
(320 letters)
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 55.7 bits (133), Expect = 7e-10
Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 8/116 (6%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDS 262
+ + VVG+VD GK+TL+ +T ++ + E+ +
Sbjct: 9 VNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNI------GVCESCK 62
Query: 263 VGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
+ + I+FID GHE + T + G D +L+
Sbjct: 63 KPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALM--DGAILV 116
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 55.9 bits (134), Expect = 2e-09
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 10/110 (9%)
Query: 203 IR-VAVVGNVDAGKSTLLGVLTH--GELDNGRGHARQKLFRHKHEMESGRTSSVGNDILG 259
+R ++V+ +VD GKSTL L G + + + K E E G T L
Sbjct: 17 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLY 76
Query: 260 FDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTG 309
+ + + + + ++ +I ID GH + +
Sbjct: 77 SE-------MSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRV 119
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 48.1 bits (113), Expect = 2e-07
Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 11/115 (9%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFD 261
E+ + +VG+VD GK+TL LT D H E+ G T +G
Sbjct: 5 EVNIGMVGHVDHGKTTLTKALTGVWTD-----------THSEELRRGITIKIGFADAEIR 53
Query: 262 SVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGM 316
N + + ++FID GHE + T + G + +
Sbjct: 54 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILV 108
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 47.5 bits (112), Expect = 5e-07
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 10/118 (8%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDS 262
+R GNVD GKSTL+G L H D+ + +S ++ + G+D+
Sbjct: 10 LRFLTCGNVDDGKSTLIGRLLH---DSKMIYEDH---LEAITRDSKKSGTTGDDVDLALL 63
Query: 263 VGNVVNKPEHGSLDWVKI--CERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLM 318
V + + E G V + + D GHE+Y + G D +++
Sbjct: 64 VDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGA--STCDLAIIL 119
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 44.2 bits (104), Expect = 5e-06
Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 26/108 (24%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTH---GELDNGRGHARQKLFRHKHEMESGRTSSVGNDILG 259
+ V +G+VD GK+TL LT+ E N + + E G T + +
Sbjct: 4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAH---- 59
Query: 260 FDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGM 307
E + + + +D GH Y+K + G
Sbjct: 60 -------------------VEYETAKRHYSHVDCPGHADYIKNMITGA 88
Score = 35.3 bits (81), Expect = 0.004
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 33 ASPADHSMLQSKVGANAGIVGMTKEHLGLALALSVP-VFVVVTKIDMCPPNVLQDTLKLL 91
A+ D ++L V A G + T+EH+ LA + VP + V + K+DM L D +++
Sbjct: 88 AAQMDGAILV--VSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEME 145
Query: 92 VR-ILKSPGCRKVPVMNCLIS 111
VR +L V S
Sbjct: 146 VRDLLNQYEFPGDEVPVIRGS 166
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 43.1 bits (101), Expect = 1e-05
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 1/87 (1%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDS 262
+ V +G+VD GK+TL +T + G ++ E R ++ + + +
Sbjct: 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST 63
Query: 263 VGNVVN-KPEHGSLDWVKICERSAKVI 288
G D+VK +
Sbjct: 64 AARHYAHTDCPGHADYVKNMITGTAPL 90
Score = 37.7 bits (87), Expect = 7e-04
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 33 ASPADHSMLQSKVGANAGIVGMTKEHLGLALALSV-PVFVVVTKIDMCPPNVLQDTLKLL 91
+P D +L V AN G + T+EHL LA + V V V V K D + + + ++L
Sbjct: 87 TAPLDGCIL--VVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELE 144
Query: 92 VR-ILKSPGCRKVPVMNCLIS----PTEEQFDLLQKKIKSLID 129
+R +L G + + S + +L K ++ L+D
Sbjct: 145 IRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLD 187
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 42.9 bits (100), Expect = 2e-05
Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 12/110 (10%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVG---NDIL 258
+ + V+G+VD GKSTL+G L D G + + + G+ S D L
Sbjct: 3 HLNLIVIGHVDHGKSTLVGRLLM---DRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRL 59
Query: 259 GFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMT 308
+ V + K T ID GH ++K + G +
Sbjct: 60 KEERERGVTINLTFMRFETKKYF------FTIIDAPGHRDFVKNMITGAS 103
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 42.7 bits (100), Expect = 2e-05
Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 6/106 (5%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDS 262
I V V+G+VD+GKST G L + G R K E G+ S +L
Sbjct: 7 INVVVIGHVDSGKSTTTGHLIY---KCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLK 63
Query: 263 VGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMT 308
+L E +T ID GH ++K + G +
Sbjct: 64 AERERGITIDIALWK---FETPKYQVTVIDAPGHRDFIKNMITGTS 106
Score = 33.5 bits (76), Expect = 0.026
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 47 ANAGIVGMTKEHLGLALALSVP-VFVVVTKIDM--CPPNVLQDTLKLLVRILKSPGCRKV 103
A G T+EH LA L V + V V K+D + Q+ +K +K G
Sbjct: 124 AGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPK 183
Query: 104 PVMNCLIS 111
V IS
Sbjct: 184 TVPFVPIS 191
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 41.6 bits (96), Expect = 4e-05
Identities = 18/92 (19%), Positives = 27/92 (29%), Gaps = 5/92 (5%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDS 262
I+VA+VG + GKSTL + + E E+ G + D+
Sbjct: 9 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFID-----GRKYVFVDT 63
Query: 263 VGNVVNKPEHGSLDWVKICERSAKVITFIDLA 294
G R I D+
Sbjct: 64 AGLRRKSRVEPRTVEKYSNYRVVDSIEKADVV 95
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 40.5 bits (93), Expect = 7e-05
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 199 DFLEIRVAVVGNVDAGKSTLLGVLTH 224
DF I + + G++D GK+TL VLT
Sbjct: 2 DFKNINLGIFGHIDHGKTTLSKVLTE 27
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 37.0 bits (84), Expect = 9e-04
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGE 226
E+ + +VG +GK+T + V+ G+
Sbjct: 2 EMELTLVGLQYSGKTTFVNVIASGQ 26
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 37.4 bits (85), Expect = 0.001
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Query: 201 LEIR---VAVVGNVDAGKSTLLGVLTH 224
++IR V+V+G+VD GK+TLL +
Sbjct: 1 MKIRSPIVSVLGHVDHGKTTLLDHIRG 27
Score = 26.2 bits (56), Expect = 5.7
Identities = 15/102 (14%), Positives = 28/102 (27%)
Query: 47 ANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLLVRILKSPGCRKVPVM 106
N G T+E L + P V KID + + + K + +
Sbjct: 103 INEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD 162
Query: 107 NCLISPTEEQFDLLQKKIKSLIDNGRGETIYDIGIGQDGGEN 148
+ + + + + + I I GE
Sbjct: 163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEG 204
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 37.4 bits (86), Expect = 0.001
Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Query: 203 IR-VAVVGNVDAGKSTLLGVLTH--GELDNGRGHARQKLFRHKHEMESGRTSSVGNDILG 259
+R + + ++DAGK+T + + G + E E R ++ +
Sbjct: 6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 65
Query: 260 FDSVGNVVNKPE-HGSLDWVKICERSAKV 287
+ +N + G +D+ ERS +V
Sbjct: 66 CFWKDHRINIIDAPGHVDFTIEVERSMRV 94
Score = 31.6 bits (71), Expect = 0.11
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 45 VGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPN 82
++ G+ ++ A VP K+D +
Sbjct: 102 FDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGAD 139
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 36.1 bits (82), Expect = 0.002
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTH 224
+R+ +VG + GKSTLL L +
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLN 22
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 35.8 bits (81), Expect = 0.003
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 204 RVAVVGNVDAGKSTLLGVLTHGELDNGRGH 233
+ + G ++GK++LL +LT +
Sbjct: 5 SIIIAGPQNSGKTSLLTLLTTDSVRPTVVS 34
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 36.0 bits (82), Expect = 0.004
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 6/105 (5%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDS 262
+ + +G+VDAGKSTL G + G R + E+G+ S + L S
Sbjct: 25 VNIVFIGHVDAGKSTLGGNILF---LTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 81
Query: 263 VGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGM 307
K + + R + +D GH+ Y+ + G
Sbjct: 82 EEREKGKTVEVGRAYFETEHRR---FSLLDAPGHKGYVTNMINGA 123
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 34.7 bits (78), Expect = 0.006
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 205 VAVVGNVDAGKSTLLGVLTHGEL 227
VA+VG + GKSTLL L ++
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVKV 30
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 34.7 bits (78), Expect = 0.006
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTHGEL---DNGRGHARQKLFRHKHEM 245
++V + G +AGKS+LL L E + G R L H H
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHID 47
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 33.9 bits (76), Expect = 0.012
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 205 VAVVGNVDAGKSTLLGVLT 223
+A+VG + GKSTLL L
Sbjct: 8 IAIVGRPNVGKSTLLNKLL 26
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 33.5 bits (75), Expect = 0.014
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGE 226
E+R+ ++G AGK+T+L L GE
Sbjct: 5 EMRILILGLDGAGKTTILYRLQVGE 29
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 33.6 bits (75), Expect = 0.017
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 205 VAVVGNVDAGKSTLLGVLTHGE 226
V +VG + GKSTL L +
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKK 24
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 33.6 bits (75), Expect = 0.018
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTHGE 226
I VA G +AGKS+ L LT+ +
Sbjct: 17 IEVAFAGRSNAGKSSALNTLTNQK 40
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 33.1 bits (74), Expect = 0.022
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGELDN 229
E+R+ ++G +AGK+T+L ++D
Sbjct: 2 ELRLLMLGLDNAGKTTILKKFNGEDVDT 29
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 32.5 bits (73), Expect = 0.031
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKH 243
+++ ++G GKS+LL T D F+ K
Sbjct: 7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKT 48
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 32.6 bits (73), Expect = 0.031
Identities = 11/52 (21%), Positives = 27/52 (51%)
Query: 193 KRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHE 244
++++S E+R+ ++G +AGK+TLL L ++ + + + +
Sbjct: 7 RKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQ 58
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 32.6 bits (73), Expect = 0.031
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 197 SQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSV 253
+ DFL + V+GN GKS LL + + H F K G+ +
Sbjct: 1 TYDFL-FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKL 56
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 33.2 bits (75), Expect = 0.032
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 189 YLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLT 223
+ ++ D + VAV G +GKS+ + L
Sbjct: 43 SAISDALKEIDSSVLNVAVTGETGSGKSSFINTLR 77
Score = 27.0 bits (59), Expect = 3.0
Identities = 14/102 (13%), Positives = 28/102 (27%), Gaps = 18/102 (17%)
Query: 47 ANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDTLKLL-------------VR 93
+ + + + V TK+D N + V
Sbjct: 143 SATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 202
Query: 94 ILKSPGCRKVPVMNCLIS---PTEEQFDLLQKKIKSLIDNGR 132
+ G + P+ L+S F +L K+ S + +
Sbjct: 203 TFRENGIAEPPI--FLLSNKNVCHYDFPVLMDKLISDLPIYK 242
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 32.9 bits (74), Expect = 0.036
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 203 IR-VAVVGNVDAGKSTLLGVLTH 224
IR VA+VG+ +GK+TL L +
Sbjct: 2 IRTVALVGHAGSGKTTLTEALLY 24
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 32.0 bits (72), Expect = 0.045
Identities = 8/55 (14%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 196 ESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRT 250
++ D+L ++ ++G+ GK+ +L + ++ F+ + G+
Sbjct: 1 KTYDYL-FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKR 54
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 32.1 bits (72), Expect = 0.050
Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 35/97 (36%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDS 262
+++ ++G+ GKS LL + + F+ K
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIK-------------------- 42
Query: 263 VGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERY 299
V I + K + D AG ER+
Sbjct: 43 --------------TVDINGKKVK-LQIWDTAGQERF 64
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 31.9 bits (71), Expect = 0.054
Identities = 14/59 (23%), Positives = 18/59 (30%)
Query: 204 RVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDS 262
V +VG +AGKS+LL +T S DI G
Sbjct: 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 61
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 31.9 bits (71), Expect = 0.055
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGE 226
E+++A+ G GKS L+
Sbjct: 2 EVKLAIFGRAGVGKSALVVRFLTKR 26
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 31.7 bits (71), Expect = 0.057
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 199 DFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRT 250
DFL ++ ++GN GK+ L+ T G G+G F K +G
Sbjct: 3 DFL-FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK 53
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 31.5 bits (70), Expect = 0.063
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTHGE 226
+R+ +VG AGK+T+L L GE
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGE 24
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 31.8 bits (71), Expect = 0.063
Identities = 8/46 (17%), Positives = 18/46 (39%)
Query: 204 RVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGR 249
+V ++G GK++L+ + ++ F K G+
Sbjct: 5 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGK 50
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 31.8 bits (71), Expect = 0.064
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 199 DFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEM 245
D++ ++ ++GN GK++ L F+ K
Sbjct: 3 DYM-FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIY 48
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 31.5 bits (70), Expect = 0.067
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGELD 228
E++V ++G+ GKS+++ D
Sbjct: 4 ELKVCLLGDTGVGKSSIMWRFVEDSFD 30
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 31.2 bits (69), Expect = 0.079
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGR 249
I++ VVGN GKS+++ G F + +
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDE 49
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 31.6 bits (70), Expect = 0.079
Identities = 8/46 (17%), Positives = 18/46 (39%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESG 248
++V ++G+ GK++L+ + + F K G
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDG 48
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 31.4 bits (70), Expect = 0.080
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 199 DFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRT 250
++ + ++G++ GKS LL T + H F + SG+
Sbjct: 2 SYI-FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK 52
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 31.7 bits (71), Expect = 0.093
Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 7/121 (5%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGN---DILG 259
+R+ V G AGKST L G L G + +G + + L
Sbjct: 55 LRLGVTGTPGAGKSTFLEAF--GMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLA 112
Query: 260 FDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLMH 319
+ P G L +R+ +++ + AG++ + TV M+
Sbjct: 113 RAEAAFIRPVPSSGHLG--GASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDC 170
Query: 320 Y 320
+
Sbjct: 171 F 171
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 31.5 bits (70), Expect = 0.093
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 205 VAVVGNVDAGKSTLLGVLTHGE 226
V VG D+GK+ L L G+
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQ 24
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 31.3 bits (69), Expect = 0.099
Identities = 14/96 (14%), Positives = 27/96 (28%)
Query: 204 RVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSV 263
+A+ G + GKS+ + L + + K + + V GF V
Sbjct: 25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84
Query: 264 GNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERY 299
+ ++ K + I H
Sbjct: 85 SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPS 120
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 31.7 bits (71), Expect = 0.10
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 191 LRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGEL 227
L ++ +D + + V+G GKS+ + + +
Sbjct: 21 LLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERV 57
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 31.5 bits (70), Expect = 0.10
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 205 VAVVGNVDAGKSTLLGVLTH 224
V VG +GK+TL G
Sbjct: 3 VVFVGTAGSGKTTLTGEFGR 22
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 31.0 bits (69), Expect = 0.11
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 199 DFLEIRVAVVGNVDAGKSTLLGVLTHGELDN 229
D+L I++ +G+ GK+T L T + +
Sbjct: 3 DYL-IKLLALGDSGVGKTTFLYRYTDNKFNP 32
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 30.7 bits (68), Expect = 0.13
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 204 RVAVVGNVDAGKSTLLGVLT 223
V +VG GKSTLL V++
Sbjct: 3 DVGLVGFPSVGKSTLLSVVS 22
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 30.7 bits (68), Expect = 0.14
Identities = 14/59 (23%), Positives = 23/59 (38%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGF 260
E +V V+G+ GKS L G + +R + E++S + D G
Sbjct: 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 30.8 bits (68), Expect = 0.14
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTHGELDN 229
++V ++G+ GK++L+ + + N
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSN 29
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 30.8 bits (68), Expect = 0.14
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 205 VAVVGNVDAGKSTLLGVLTH 224
+ G + GKSTL+ LT
Sbjct: 3 IIFAGRSNVGKSTLIYRLTG 22
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 30.8 bits (68), Expect = 0.14
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTHGE 226
I++ ++G GKS+++ +
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSND 27
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 30.7 bits (68), Expect = 0.15
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGELDN 229
E +V +VG +AGK+T+L + E+ +
Sbjct: 15 EHKVIIVGLDNAGKTTILYQFSMNEVVH 42
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 30.7 bits (68), Expect = 0.15
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGELDN 229
E+R+ V+G+ +GKS+L+ G
Sbjct: 5 ELRLGVLGDARSGKSSLIHRFLTGSYQV 32
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 30.3 bits (67), Expect = 0.18
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGELDN 229
E+R+ ++G AGK+T+L L G+
Sbjct: 12 EMRILMLGLDAAGKTTILYKLKLGQSVT 39
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 30.3 bits (67), Expect = 0.20
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGE 226
+ RVAV G GKS+L+ G
Sbjct: 2 DYRVAVFGAGGVGKSSLVLRFVKGT 26
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 30.3 bits (67), Expect = 0.21
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRT 250
+V ++G+ GKS+L+ + D H F +K G
Sbjct: 7 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHF 54
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 30.2 bits (67), Expect = 0.22
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 199 DFLEIRVAVVGNVDAGKSTLLGVLTHGE 226
D+L +V ++G+ GKS LL T E
Sbjct: 2 DYL-FKVVLIGDSGVGKSNLLSRFTRNE 28
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 30.1 bits (66), Expect = 0.23
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGE 226
++ +G +AGK+TLL +L
Sbjct: 13 TGKLVFLGLDNAGKTTLLHMLKDDR 37
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 30.1 bits (66), Expect = 0.24
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGE 226
++A++G GKS+L G+
Sbjct: 4 SRKIAILGYRSVGKSSLTIQFVEGQ 28
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 30.0 bits (66), Expect = 0.25
Identities = 7/45 (15%), Positives = 14/45 (31%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEME 246
++ VVG GKS L + + + ++
Sbjct: 6 THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVD 50
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 30.0 bits (66), Expect = 0.26
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGELDN 229
I+ VVG+ GK+ LL T
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPG 32
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 29.5 bits (65), Expect = 0.29
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 204 RVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRT 250
++ +G GK++L+ + DN F K RT
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 48
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 29.8 bits (66), Expect = 0.30
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 199 DFLEIRVAVVGNVDAGKSTLLGVLTHGELDN 229
D+L ++ ++GN GKS LL + N
Sbjct: 4 DYL-FKLLLIGNSGVGKSCLLLRFSDDTYTN 33
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 29.5 bits (65), Expect = 0.34
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 199 DFLEIRVAVVGNVDAGKSTLLGVLTHGE 226
D +V +VG+ GK+ LL G
Sbjct: 4 DVA-FKVMLVGDSGVGKTCLLVRFKDGA 30
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 29.6 bits (65), Expect = 0.36
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGE 226
E+R+ ++G AGK+T+L L GE
Sbjct: 17 ELRILILGLDGAGKTTILYRLQIGE 41
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 29.6 bits (65), Expect = 0.36
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDN 229
L ++ VVG+ GK+ LL +
Sbjct: 8 LMLKCVVVGDGAVGKTCLLMSYANDAFPE 36
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 29.5 bits (65), Expect = 0.37
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGELD 228
E+++ ++G ++GKST + +
Sbjct: 2 ELKLLLLGTGESGKSTFIKQMRIIHGS 28
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 29.2 bits (64), Expect = 0.39
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGE 226
E ++ VVG GKS L L
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNH 27
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 29.2 bits (64), Expect = 0.43
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 201 LEIRVAVVGNVDAGKSTLLGVLTHGELD 228
++ ++ VVG+ GK+ LL V
Sbjct: 1 VKCKIVVVGDSQCGKTALLHVFAKDCFP 28
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 29.2 bits (64), Expect = 0.44
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 201 LEIRVAVVGNVDAGKSTLLGVLTHGELDN 229
+ ++ +VG+ GK+ LL V + +
Sbjct: 1 IRKKLVIVGDGACGKTCLLIVNSKDQFPE 29
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 29.2 bits (64), Expect = 0.46
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHAR 235
+++ + G GK+TL+ + L
Sbjct: 1 MKIIITGEPGVGKTTLVKKIV-ERLGKRAIGFW 32
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 29.2 bits (64), Expect = 0.47
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 204 RVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEM 245
++ +VG+ GK+T + GE +
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH 46
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 29.2 bits (64), Expect = 0.47
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTHGE 226
++ V+G+ + GK+ L G
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGR 26
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 28.8 bits (63), Expect = 0.55
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGE 226
E ++ V+G+ GKS L G
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGI 27
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 28.9 bits (63), Expect = 0.60
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 204 RVAVVGNVDAGKSTLLGVLTHGE 226
++ +G +AGK+TLL +L +
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDR 24
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 28.8 bits (63), Expect = 0.61
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGE 226
E+++ ++G ++GKST++ +
Sbjct: 2 EVKLLLLGAGESGKSTIVKQMKIIH 26
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 28.8 bits (63), Expect = 0.67
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTHGELDN 229
I+ VVG+ GK+ LL T + +
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPS 30
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 28.5 bits (62), Expect = 0.69
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 204 RVAVVGNVDAGKSTLLGVLTHGE 226
++ ++G GKS+L+ G+
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQ 30
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 28.7 bits (64), Expect = 0.74
Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 4/116 (3%)
Query: 205 VAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGNDILGFDSVG 264
V G GK+TLL ++ L +G G+ + +I+ +
Sbjct: 30 VNFHGPNGIGKTTLLKTIS-TYLKPLKGEII--YNGVPITKVKGKIFFLPEEIIVPRKIS 86
Query: 265 NVVNKPEHGSLDWVKI-CERSAKVITFIDLAGHERYLKTTVFGMTGHVPDFGMLMH 319
SL VK+ + +++ ++ L G V L+
Sbjct: 87 VEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLV 142
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 28.5 bits (62), Expect = 0.79
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGE 226
++ VVG+ GKS L
Sbjct: 4 TYKLVVVGDGGVGKSALTIQFFQKI 28
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 28.6 bits (63), Expect = 0.95
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 191 LRKRVESQDFLEIRVAVVGNVDAGKSTLL 219
+ + S ++ VVG+ +GKS++L
Sbjct: 13 VFNTLGSDPLDLPQIVVVGSQSSGKSSVL 41
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 28.0 bits (61), Expect = 1.0
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 204 RVAVVGNVDAGKSTLLGVLTHGE 226
+V +VG+ GKS L + E
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDE 28
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 27.5 bits (60), Expect = 1.4
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 204 RVAVVGNVDAGKSTLLGVLTHGE 226
+ ++G+ GKS LL T
Sbjct: 5 KYIIIGDTGVGKSCLLLQFTDKR 27
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 28.0 bits (61), Expect = 1.6
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 204 RVAVVGNVDAGKSTLLGVLT 223
+ VVG + GKST T
Sbjct: 2 EIGVVGKPNVGKSTFFSAAT 21
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 27.7 bits (60), Expect = 1.6
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 202 EIRVAVVGNVDAGKSTLLGVLTHGE 226
+ R+ VVG GKS L
Sbjct: 5 KYRLVVVGGGGVGKSALTIQFIQSY 29
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 28.0 bits (62), Expect = 1.7
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 205 VAVVGNVDAGKSTLLGVLTHGELDNGRG 232
+A+ G+ +GK++LL ++ GEL+ G
Sbjct: 65 LAITGSTGSGKTSLLMLIL-GELEASEG 91
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 28.0 bits (62), Expect = 1.7
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 203 IRVAVVGNVDAGKSTLLGVL 222
+R+ + G GK+T
Sbjct: 6 LRIYLDGAYGIGKTTAAEEF 25
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 27.5 bits (60), Expect = 2.0
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 203 IRVAVVGNVDAGKSTLLGVLT 223
++ +VG + GKST +T
Sbjct: 11 LKTGIVGMPNVGKSTFFRAIT 31
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 27.4 bits (59), Expect = 2.0
Identities = 12/48 (25%), Positives = 19/48 (39%)
Query: 199 DFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEME 246
+F E ++G +GKS+LL + G R +K K
Sbjct: 20 EFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGAR 67
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 27.0 bits (58), Expect = 2.1
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 204 RVAVVGNVDAGKSTLLGVLTHGE 226
+V ++G GKS L + E
Sbjct: 3 KVLLLGAPGVGKSALARIFGGVE 25
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 27.5 bits (61), Expect = 2.1
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 205 VAVVGNVDAGKSTLLGVLTHGELDNGR------GHARQKLFRHKHEMESGRTSSVGNDIL 258
VA+VG +GKST+ ++T D GH ++ + S +
Sbjct: 44 VALVGRSGSGKSTIASLIT-RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN 102
Query: 259 GFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDL 293
+ + E S + ++ R A + FI+
Sbjct: 103 DTVANNIAYARTEEYSREQIEEAARMAYAMDFINK 137
>d1ccda_ a.101.1.1 (A:) Clara cell 17kDa protein {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 77
Score = 25.9 bits (57), Expect = 2.1
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 76 IDMCPPNVLQDTLKLLVRILKSPGCRK 102
+D P + +KL +IL SP C +
Sbjct: 47 VDTLPQETRINIVKLTEKILTSPLCEQ 73
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 27.2 bits (60), Expect = 2.2
Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 6/110 (5%)
Query: 204 RVAVVGNVDAGKSTLLGVLTHGELDNGRGHAR---QKLFRHKHEMESGRTSSVGNDILGF 260
+ +VG +GKSTL ++ G L + V D +
Sbjct: 31 VIGIVGRSGSGKSTLTKLIQ-RFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 89
Query: 261 D--SVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGHERYLKTTVFGMT 308
+ + N+ S++ V + A FI G
Sbjct: 90 NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAG 139
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 27.5 bits (60), Expect = 2.3
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 203 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGHAR 235
IRV + G GKST + L G A
Sbjct: 52 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAV 84
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 27.1 bits (59), Expect = 2.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 204 RVAVVGNVDAGKSTLL 219
++AVVG AGKS++L
Sbjct: 28 QIAVVGGQSAGKSSVL 43
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 27.1 bits (60), Expect = 2.7
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 204 RVAVVGNVDAGKSTLLGVL 222
+A G GKST+ +L
Sbjct: 30 IIAFAGPSGGGKSTIFSLL 48
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 27.1 bits (60), Expect = 2.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 204 RVAVVGNVDAGKSTLLGVL 222
VA VG GKSTL+ ++
Sbjct: 46 TVAFVGMSGGGKSTLINLI 64
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 26.9 bits (59), Expect = 2.8
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 205 VAVVGNVDAGKSTLLGVLTHGELDNGRGHARQ 236
VA+VG GKS L+ L + G Q
Sbjct: 35 VAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQ 66
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 27.3 bits (60), Expect = 2.9
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 203 IRVAVVGNVDAGKSTLLGVL 222
+R+ + G GKST V+
Sbjct: 7 VRIYLDGVYGIGKSTTGRVM 26
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ),
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 27.0 bits (59), Expect = 3.1
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 59 LGLALALSVPVFVVVTKIDMCPPNVLQ 85
L LA + +V+ K+D+ + L+
Sbjct: 34 LVLAEKNELETVMVINKMDLYDEDDLR 60
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 26.9 bits (59), Expect = 3.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 203 IRVAVVGNVDAGKSTLLGVL 222
+RV + G GK+T +L
Sbjct: 5 LRVYIDGPHGMGKTTTTQLL 24
>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 142
Score = 26.5 bits (57), Expect = 3.2
Identities = 15/110 (13%), Positives = 25/110 (22%), Gaps = 4/110 (3%)
Query: 173 CVLLRQRKLDNGLTGQYLLRKRVESQDFLEIRVAVVGNVDAGKSTLLGVLTHGELDNGRG 232
CVL + L Q LL +R S + + + L
Sbjct: 17 CVLEQPGALG----AQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGP 72
Query: 233 HARQKLFRHKHEMESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICE 282
L + + + + G G W+ E
Sbjct: 73 LPATHLRHLGEVVHTFSHIKLTYQVYGLALEGQTPVTTVPPGARWLTQEE 122
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 26.6 bits (57), Expect = 3.2
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 204 RVAVVGNVDAGKSTLLGVLTHGE 226
RV ++G GKSTL +
Sbjct: 5 RVVLIGEQGVGKSTLANIFAGVH 27
>d1utga_ a.101.1.1 (A:) Uteroglobin {Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]}
Length = 70
Score = 25.1 bits (55), Expect = 3.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 76 IDMCPPNVLQDTLKLLVRILKSPGC 100
+D P ++ +KL +I+KSP C
Sbjct: 45 LDSLPQTTRENIMKLTEKIVKSPLC 69
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 26.4 bits (58), Expect = 3.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 204 RVAVVGNVDAGKSTLLGVL 222
A+VG +GKST+ +L
Sbjct: 42 VTALVGPNGSGKSTVAALL 60
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 26.0 bits (56), Expect = 4.9
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 202 EIRVAVVGNVDAGKSTLL 219
+++ ++G ++GKST L
Sbjct: 2 LVKILLLGAGESGKSTFL 19
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 25.7 bits (56), Expect = 6.5
Identities = 16/117 (13%), Positives = 30/117 (25%), Gaps = 11/117 (9%)
Query: 201 LEIR----VAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMES-----GRTS 251
EI ++G AGK+T L +++ + G E
Sbjct: 23 FEIEEGEIFGLIGPNGAGKTTTLRIIS-TLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP 81
Query: 252 SVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVITFIDLAGH-ERYLKTTVFGM 307
+ + + +I E + L + + T GM
Sbjct: 82 EEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGM 138
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 25.9 bits (56), Expect = 6.6
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 204 RVAVVGNVDAGKSTLLGVLTHGE 226
R+ ++G ++GKST++ +
Sbjct: 8 RLLLLGAGESGKSTIVKQMRILH 30
>d1c4ka1 c.23.1.4 (A:1-107) Ornithine decarboxylase N-terminal
"wing" domain {Lactobacillus sp., strain 30a [TaxId:
1591]}
Length = 107
Score = 24.8 bits (54), Expect = 6.7
Identities = 5/38 (13%), Positives = 9/38 (23%), Gaps = 5/38 (13%)
Query: 47 ANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVL 84
++ +PVF V + L
Sbjct: 41 YETDVIDAADAT-----KFGIPVFAVTKDAQAISADEL 73
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 25.8 bits (56), Expect = 7.3
Identities = 20/87 (22%), Positives = 27/87 (31%), Gaps = 5/87 (5%)
Query: 204 RVAVVGNVDAGKSTLLGVLTHGELDNGRGHARQKLFRHKHEMESGRTSSVGN----DILG 259
G GKS+LL EL + L R KH D G
Sbjct: 99 TTVFAGQSGVGKSSLLN-AISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPG 157
Query: 260 FDSVGNVVNKPEHGSLDWVKICERSAK 286
F S+ + E + I E+S+
Sbjct: 158 FSSLEFTDIEEEELGYTFPDIREKSSS 184
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 25.3 bits (55), Expect = 8.8
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 201 LEIR----VAVVGNVDAGKSTLLGVLT 223
E+R + +VG AGKSTLL +
Sbjct: 20 GEVRAGEILHLVGPNGAGKSTLLARMA 46
>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus
sphaericus [TaxId: 1421]}
Length = 230
Score = 25.4 bits (55), Expect = 9.3
Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 5/104 (4%)
Query: 191 LRKRVESQDFLEIRVAV--VGNVD---AGKSTLLGVLTHGELDNGRGHARQKLFRHKHEM 245
++ S + V+V +GNV K G N + +
Sbjct: 28 AKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV 87
Query: 246 ESGRTSSVGNDILGFDSVGNVVNKPEHGSLDWVKICERSAKVIT 289
V DI ++G V+N L I + +
Sbjct: 88 APNAIYGVTCDIFAPCALGAVLNDFTIPQLKAKVIAGSADNQLK 131
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.395
Gapped
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,163,323
Number of extensions: 52802
Number of successful extensions: 260
Number of sequences better than 10.0: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 127
Length of query: 320
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 235
Effective length of database: 1,240,546
Effective search space: 291528310
Effective search space used: 291528310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.1 bits)