BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15139
         (189 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QI3|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With
           Inhibitor Bay73-6691
 pdb|3QI3|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With
           Inhibitor Bay73-6691
 pdb|3QI4|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
 pdb|3QI4|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
          Length = 533

 Score = 30.4 bits (67), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 16/104 (15%)

Query: 60  DGK--NVIVSHFNSREDLIQYLLLCLEKALPL----------DAHLKVNGKLHVSLTRI- 106
           DG+   VI S + +  D++   L C+   LP           DA + ++  +  +  R  
Sbjct: 18  DGRIQKVIFSKYCNSSDIMD--LFCIATGLPRNTTISLLTTDDAMVSIDPTMPANSERTP 75

Query: 107 YDGKNVIVSHFNSREDLIQALLASAFVPFFSGF-IPKEEALVAN 149
           Y  + V +   + RE+LIQ++LA     F   F I + +A VAN
Sbjct: 76  YKVRPVAIKQLSEREELIQSVLAQVAEQFSRAFKINELKAEVAN 119


>pdb|1GFF|1 Chain 1, The Atomic Structure Of The Degraded Procapsid Particle Of
           The Bacteriophage G4: Induced Structural Changes In The
           Presence Of Calcium Ions And Functional Implications
          Length = 426

 Score = 28.1 bits (61), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 143 EEALVANLPPTVKAIFQLFHMNFANTSVELSSQNFFRIM--RILFP 186
           + AL+ANLPP   ++ + FH +  +   +++   ++R    R+ FP
Sbjct: 316 DPALMANLPPREVSLKEFFHSSPDSAKFKIAEGQWYRTQPDRVAFP 361


>pdb|1SDD|A Chain A, Crystal Structure Of Bovine Factor Vai
          Length = 306

 Score = 27.3 bits (59), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 55  LTRIYDGKNVIVSHFNSREDLIQYLLLCLEKALPLDAHLKVNGKLHVSLTRIYD 108
           LT IY     +V  FNS   LI  LL+C +  L  D   K+  K HV +  ++D
Sbjct: 140 LTHIYYSYVNLVEDFNS--GLIGPLLICKKGTLTEDGTQKMFEKQHVLMFAVFD 191


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,331,555
Number of Sequences: 62578
Number of extensions: 208806
Number of successful extensions: 622
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 608
Number of HSP's gapped (non-prelim): 18
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)