BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15139
(189 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BJ56|PLPL2_MOUSE Patatin-like phospholipase domain-containing protein 2 OS=Mus
musculus GN=Pnpla2 PE=1 SV=1
Length = 486
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 102/197 (51%), Gaps = 37/197 (18%)
Query: 1 EITSDVLRLVGEARRRVIGPFSPSFSVQECLREGLEKALPLDAHLKVNGKLHVSLTRIYD 60
E ++++ + EAR+R +GP PSF++ + +R L K LP D H + NG+L +SLTR+ D
Sbjct: 64 EAGANIIEVSKEARKRFLGPLHPSFNLVKTIRGCLLKTLPADCHERANGRLGISLTRVSD 123
Query: 61 GKNVIVSHFNSREDLIQYLLL-------CLEKALPLDAHLKVNGKLHVSLTRIYDGKNVI 113
G+NVI+SHF+S+++LIQ + C L V+G + +L +Y+ KN I
Sbjct: 124 GENVIISHFSSKDELIQANVCSTFIPVYCGLIPPTLQGVRYVDGGISDNLP-LYELKNTI 182
Query: 114 -VSHFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAIFQLFHMNFANTSVEL 172
VS F+ D+ P++ + + + NTS++
Sbjct: 183 TVSPFSGESDI----------------CPQDSST------------NIHELRVTNTSIQF 214
Query: 173 SSQNFFRIMRILFPPDP 189
+ +N +R+ + LFPP+P
Sbjct: 215 NLRNLYRLSKALFPPEP 231
>sp|P0C548|PLPL2_RAT Patatin-like phospholipase domain-containing protein 2 OS=Rattus
norvegicus GN=Pnpla2 PE=2 SV=1
Length = 478
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 102/197 (51%), Gaps = 37/197 (18%)
Query: 1 EITSDVLRLVGEARRRVIGPFSPSFSVQECLREGLEKALPLDAHLKVNGKLHVSLTRIYD 60
E ++++ + EAR+R +GP PSF++ + +R L K LP D H + +G+L +SLTR+ D
Sbjct: 64 EAGANIIEVSKEARKRFLGPLHPSFNLVKTIRGCLLKTLPADCHTRASGRLGISLTRVSD 123
Query: 61 GKNVIVSHFNSREDLIQYLLL-------CLEKALPLDAHLKVNGKLHVSLTRIYDGKNVI 113
G+NVI+SHF+S+++LIQ + C L V+G + +L +Y+ KN I
Sbjct: 124 GENVIISHFSSKDELIQANVCSTFIPVYCGLIPPTLQGVRYVDGGISDNLP-LYELKNTI 182
Query: 114 -VSHFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAIFQLFHMNFANTSVEL 172
VS F+ D+ P++ + + + NTS++
Sbjct: 183 TVSPFSGESDI----------------CPQDSST------------NIHELRITNTSIQF 214
Query: 173 SSQNFFRIMRILFPPDP 189
+ +N +R+ + LFPP+P
Sbjct: 215 NLRNLYRLSKALFPPEP 231
>sp|Q2KI18|PLPL2_BOVIN Patatin-like phospholipase domain-containing protein 2 OS=Bos
taurus GN=PNPLA2 PE=2 SV=1
Length = 486
Score = 90.5 bits (223), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 101/197 (51%), Gaps = 37/197 (18%)
Query: 1 EITSDVLRLVGEARRRVIGPFSPSFSVQECLREGLEKALPLDAHLKVNGKLHVSLTRIYD 60
E ++++ + EAR+R +GP PSF++ + +R L K LP D + +G+L +SLTR+ D
Sbjct: 64 EAGANIIEVSKEARKRFLGPLHPSFNMVKTIRGCLLKILPADCYECASGRLGISLTRVSD 123
Query: 61 GKNVIVSHFNSREDLIQYLLL-------CLEKALPLDAHLKVNGKLHVSLTRIYDGKNVI 113
G+NVI++HFNS+E+LIQ + C L V+G + +L +Y+ KN I
Sbjct: 124 GENVIITHFNSKEELIQANVCSTFIPVYCGLIPPSLQGVRYVDGGISDNLP-LYELKNTI 182
Query: 114 -VSHFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAIFQLFHMNFANTSVEL 172
VS F+ D+ P++ + + + NTS++
Sbjct: 183 TVSPFSGESDI----------------CPQDSST------------NIHELRVTNTSIQF 214
Query: 173 SSQNFFRIMRILFPPDP 189
+ +N +R+ + LFPP+P
Sbjct: 215 NLRNLYRLSKALFPPEP 231
>sp|Q96AD5|PLPL2_HUMAN Patatin-like phospholipase domain-containing protein 2 OS=Homo
sapiens GN=PNPLA2 PE=1 SV=1
Length = 504
Score = 90.1 bits (222), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 100/197 (50%), Gaps = 37/197 (18%)
Query: 1 EITSDVLRLVGEARRRVIGPFSPSFSVQECLREGLEKALPLDAHLKVNGKLHVSLTRIYD 60
E + + + EAR+R +GP PSF++ + +R L K LP D+H +G+L +SLTR+ D
Sbjct: 64 EAGAKFIEVSKEARKRFLGPLHPSFNLVKIIRSFLLKVLPADSHEHASGRLGISLTRVSD 123
Query: 61 GKNVIVSHFNSREDLIQ-------YLLLCLEKALPLDAHLKVNGKLHVSLTRIYDGKNVI 113
G+NVI+SHFNS+++LIQ + C L V+G + +L +Y+ KN I
Sbjct: 124 GENVIISHFNSKDELIQANVCSGFIPVYCGLIPPSLQGVRYVDGGISDNLP-LYELKNTI 182
Query: 114 -VSHFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAIFQLFHMNFANTSVEL 172
VS F+ D+ P++ + + + NTS++
Sbjct: 183 TVSPFSGESDI----------------CPQDSST------------NIHELRVTNTSIQF 214
Query: 173 SSQNFFRIMRILFPPDP 189
+ +N +R+ + LFPP+P
Sbjct: 215 NLRNLYRLSKALFPPEP 231
>sp|Q91WW7|PLPL3_MOUSE Patatin-like phospholipase domain-containing protein 3 OS=Mus
musculus GN=Pnpla3 PE=2 SV=1
Length = 413
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 98/184 (53%), Gaps = 23/184 (12%)
Query: 6 VLRLVGEARRRVIGPFSPSFSVQECLREGLEKALPLDAHLKVNGKLHVSLTRIYDGKNVI 65
++ LV +AR R IG P F++ +C+R+GL+++LP + H ++GK+H+SLTR+ DG+NV+
Sbjct: 69 LMDLVRKARSRNIGTLHPFFNINKCIRDGLQESLPDNVHQVISGKVHISLTRVSDGENVL 128
Query: 66 VSHFNSREDLIQYLLL-CLEKALPLDAHLKVNGKLHVSLTRIYDGKNVIVSHFNSREDLI 124
VS F+S+++++ L+ C +PL + L + + G+ + + ++
Sbjct: 129 VSEFHSKDEVVDALVCSCF---IPLFSGL---------IPPSFRGERYVDGGVSDNVPVL 176
Query: 125 QALLASAFVPFFSGFIPKEEALVANLPPTVKAIFQLFHMNFANTSVELSSQNFFRIMRIL 184
A PF+ ++ P VK+ FH+N N S+ L + N + R L
Sbjct: 177 DAKTTITVSPFYGEH---------DICPKVKST-NFFHVNITNLSLRLCTGNLQLLTRAL 226
Query: 185 FPPD 188
FP D
Sbjct: 227 FPSD 230
>sp|Q8N8W4|PLPL1_HUMAN Patatin-like phospholipase domain-containing protein 1 OS=Homo
sapiens GN=PNPLA1 PE=2 SV=3
Length = 532
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 84/177 (47%), Gaps = 37/177 (20%)
Query: 41 LDAHLKVNGKLHVSLTRIYDGKNVIVSHFNSREDLIQYLLLCLEKALPLDAHLKVNGKLH 100
+D +L+V L+V + + K + + ++Q + L + LP D++ GKLH
Sbjct: 68 MDEYLRV---LNVGVAEV---KKSFLGPLSPSCKMVQMMRQFLYRVLPEDSYKVTTGKLH 121
Query: 101 VSLTRIYDGKNVIVSHFNSREDLIQALLASAFVPFFSGFIPK------------------ 142
VSLTR+ DG+NV+VS F S+E+LI+AL S FVP + G IP
Sbjct: 122 VSLTRLTDGENVVVSEFTSKEELIEALYCSCFVPVYCGLIPPTYRGVRYIDGGFTGMQPC 181
Query: 143 ---EEALVAN--------LPPTVKAIFQLFHMNFANTSVELSSQNFFRIMRILFPPD 188
+A+ + P AIF F M N S + S +N R+ LFPPD
Sbjct: 182 AFWTDAITISTFSGQQDICPRDCPAIFHDFRM--FNCSFQFSLENIARMTHALFPPD 236
>sp|Q9NST1|PLPL3_HUMAN Patatin-like phospholipase domain-containing protein 3 OS=Homo
sapiens GN=PNPLA3 PE=1 SV=2
Length = 481
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 94/189 (49%), Gaps = 26/189 (13%)
Query: 1 EITSDVLRLVGEARRRVIGPFSPSFSVQECLREGLEKALPLDAHLKVNGKLHVSLTRIYD 60
++ SD++R +AR R IG F PSF++ + LR+GL K LP + H ++GK+ +SLTR+ D
Sbjct: 67 QVLSDLVR---KARSRNIGIFHPSFNLSKFLRQGLCKCLPANVHQLISGKIGISLTRVSD 123
Query: 61 GKNVIVSHFNSREDLIQYLLL-CLEKALPLDAHLKVNGKLHVSLTRIYDGKNVIVSHFNS 119
G+NV+VS F S+++++ L+ C +P + L + + G + +
Sbjct: 124 GENVLVSDFRSKDEVVDALVCSCF---IPFYSGL---------IPPSFRGVRYVDGGVSD 171
Query: 120 REDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAIFQLFHMNFANTSVELSSQNFFR 179
I A PF+ + ++ P VK+ H++ S+ L + N +
Sbjct: 172 NVPFIDAKTTITVSPFYGEY---------DICPKVKST-NFLHVDITKLSLRLCTGNLYL 221
Query: 180 IMRILFPPD 188
+ R PPD
Sbjct: 222 LSRAFVPPD 230
>sp|Q3V1D5|PLPL1_MOUSE Patatin-like phospholipase domain-containing protein 1 OS=Mus
musculus GN=Pnpla1 PE=2 SV=1
Length = 599
Score = 77.8 bits (190), Expect = 4e-14, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 37/146 (25%)
Query: 75 LIQYLLLCLEKALPLDAHLKVNGKLHVSLTRIYDGKNVIVSHFNSREDLIQALLASAFVP 134
++Q + L LP D++ GKLHVSLTR+ DG+NV+VS + S+E+LI+AL S FVP
Sbjct: 96 MVQMMRQFLYDVLPEDSYKFATGKLHVSLTRVTDGENVVVSEYRSKEELIEALYCSCFVP 155
Query: 135 FFSGFIP--------------------------------KEEALVANLPPTVKAIFQLFH 162
+ GFIP ++ + PT+ F++F+
Sbjct: 156 VYCGFIPPTYRGERYIDGGFTSMQPCSFWTDSITISTFSSQQDICPRDCPTIFHDFRMFN 215
Query: 163 MNFANTSVELSSQNFFRIMRILFPPD 188
+F + S +N R+ LFPPD
Sbjct: 216 FSF-----QFSLENITRMTHALFPPD 236
>sp|Q32LZ8|PLPL5_MOUSE Patatin-like phospholipase domain-containing protein 5 OS=Mus
musculus GN=Pnpla5 PE=2 SV=1
Length = 432
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 27/134 (20%)
Query: 83 LEKALPLDAHLKVNGKLHVSLTRIYDGKNVIVSHFNSREDLIQALLASAFVPFFSGFIPK 142
L + LP + H+ + +L +S+TR DGKN IV+ F +R++ IQAL+ + ++P + G IP
Sbjct: 100 LYENLPDNCHILASQRLGISMTRWPDGKNFIVTDFATRDEFIQALICTLYLPLYCGVIPP 159
Query: 143 --------EEALVANLP----PTVKAI---------------FQLFHMNFANTSVELSSQ 175
+ AL NLP PT + LF + N S ++S++
Sbjct: 160 AFRGQRFIDGALSNNLPFSDCPTTITVSPFNGTVDICPQNISHSLFELTAFNASFQISTR 219
Query: 176 NFFRIMRILFPPDP 189
NFFR ++ +FPP P
Sbjct: 220 NFFRGLKSVFPPKP 233
>sp|Q11186|YPD7_CAEEL Uncharacterized protein C05D11.7 OS=Caenorhabditis elegans
GN=C05D11.7 PE=2 SV=2
Length = 621
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 39/193 (20%)
Query: 3 TSDVLRLVGEARRRVIGPFSPSFSVQECLREGLEKALPLDAHLKVNGKLHVSLTRIYDGK 62
TS +L++V +AR R GP P F++ +R+ LE LP +A+ G+L +SLTR D +
Sbjct: 67 TSTILKVVSQARSRTFGPLHPEFNLLGIVRDELEVILPPNAYEMCTGRLVISLTRWSDHE 126
Query: 63 NVIVSHFNSREDLIQYLLL-CLEKALPLDAHL---KVNGKLHVSL-----TRIYDGKNVI 113
NVI+ + S DLI ++ C +PL + K G ++ IYD V
Sbjct: 127 NVIIDEYRSNADLIDAIMCSCF---IPLYCGITPPKFRGVQYIDGGVSDNQPIYDEHTVT 183
Query: 114 VSHFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAIFQLFHMNFANTSVELS 173
VS F+ D+ PP + + ++F TS+ +
Sbjct: 184 VSPFSGESDI--------------------------CPPDWDS-GSMLGVDFNGTSIRFT 216
Query: 174 SQNFFRIMRILFP 186
++N FR+M L+P
Sbjct: 217 TRNMFRLMACLWP 229
>sp|Q7Z6Z6|PLPL5_HUMAN Patatin-like phospholipase domain-containing protein 5 OS=Homo
sapiens GN=PNPLA5 PE=2 SV=1
Length = 429
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 27/132 (20%)
Query: 83 LEKALPLDAHLKVNGKLHVSLTRIYDGKNVIVSHFNSREDLIQALLASAFVPFFSGFIPK 142
L+ ALP DAH+ + +L +SLTR DG+N +V+ F + ++LIQAL+ + + PF+ G IP
Sbjct: 100 LQDALPPDAHVLASQRLGISLTRWPDGRNFLVTDFATCDELIQALVCTLYFPFYCGLIPP 159
Query: 143 E--------EALVANLP--------------PTVKAIFQ-----LFHMNFANTSVELSSQ 175
E AL NLP TV Q L +N N S ++S++
Sbjct: 160 EFRGERYIDGALSNNLPFADCPSTITVSPFHGTVDICPQSTSPNLHELNVFNFSFQISTE 219
Query: 176 NFFRIMRILFPP 187
NFF + L PP
Sbjct: 220 NFFLGLICLIPP 231
>sp|P41247|PLPL4_HUMAN Patatin-like phospholipase domain-containing protein 4 OS=Homo
sapiens GN=PNPLA4 PE=2 SV=3
Length = 253
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 83/196 (42%), Gaps = 39/196 (19%)
Query: 1 EITSDVLRLVGEARRRVIGPFSPSFSVQECLREGLEKALPLDAHLKVNGKLHVSLTRIYD 60
E + E RR+ G +P + LR G+E LP AH +LHVS+T
Sbjct: 61 ECNQFTYKFAEEIRRQSFGAVTPGYDFMARLRSGMESILPPSAHELAQNRLHVSITNAKT 120
Query: 61 GKNVIVSHFNSREDLIQYLLLCLEKALPLDAHLK---------VNGKLHVSLTRIYDGKN 111
+N +VS F+SREDLI+ LL +P+ A LK V+G L +L + G+
Sbjct: 121 RENHLVSTFSSREDLIKVLL--ASSFVPIYAGLKLVEYKGQKWVDGGLTNALPILPVGRT 178
Query: 112 VIVSHFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAIFQLFHMNFANTSVE 171
V +S F+ R D + P K L+ +N A +
Sbjct: 179 VTISPFSGRLD---------------------------ISPQDKGQLDLY-VNIAKQDIM 210
Query: 172 LSSQNFFRIMRILFPP 187
LS N R+ + LFPP
Sbjct: 211 LSLANLVRLNQALFPP 226
>sp|Q7NAF8|DNLJ_MYCGA DNA ligase OS=Mycoplasma gallisepticum (strain R(low / passage 15 /
clone 2)) GN=ligA PE=3 SV=2
Length = 715
Score = 34.3 bits (77), Expect = 0.45, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 63 NVIVSHFNSRE--DLIQYLLLCLEKALPLDAHLKVNGKLHVSLTRIYDGKNVIVSHFN-S 119
N + S F+ + +LI+ L K L ++ ++N L S + YD K VI F+ S
Sbjct: 605 NSLFSFFSDEKNWELIEQL-----KTLSINTKDEINNDLVDSSSIYYDKKFVITGSFSIS 659
Query: 120 REDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAIFQ 159
R D+I+ L + F SG + ++A PT K I Q
Sbjct: 660 RNDIIKKLSLKYKIKFVSGVSKNVDFVLAGNSPTAKKINQ 699
>sp|A0M3Y9|RPOB_GRAFK DNA-directed RNA polymerase subunit beta OS=Gramella forsetii
(strain KT0803) GN=rpoB PE=3 SV=1
Length = 1270
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 23 PSFSVQECLREGLEKALPLDAHLKV 47
P +S+QEC+ GL ++PL A LK+
Sbjct: 78 PRYSIQECIERGLTYSVPLKARLKL 102
>sp|Q45718|CR1HB_BACTM Pesticidal crystal protein cry1Hb OS=Bacillus thuringiensis subsp.
morrisoni GN=cry1Hb PE=2 SV=1
Length = 1155
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 95 VNGKLHVSLTRIYDGKNVIVSHFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPTV 154
V+G + + TR +G + + N+ L + F+ P++E N PP +
Sbjct: 362 VSGGISPNRTRAVEGVRFLTARDNNLNSLPFLYRKEGSLDSFTELPPEDE----NEPPYI 417
Query: 155 KAIFQLFHMNFANTSVELSSQNFFRI 180
+L H FA +SV L NF RI
Sbjct: 418 GYSHRLCHARFARSSVVLEPSNFARI 443
>sp|B2RL45|RPOB_PORG3 DNA-directed RNA polymerase subunit beta OS=Porphyromonas
gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)
GN=rpoB PE=3 SV=1
Length = 1269
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 23 PSFSVQECLREGLEKALPLDAHLKV 47
P +S++ECL GL ++PL A LK+
Sbjct: 79 PKYSIEECLSRGLTYSVPLKAKLKL 103
>sp|Q7MX27|RPOB_PORGI DNA-directed RNA polymerase subunit beta OS=Porphyromonas
gingivalis (strain ATCC BAA-308 / W83) GN=rpoB PE=3 SV=1
Length = 1269
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 23 PSFSVQECLREGLEKALPLDAHLKV 47
P +S++ECL GL ++PL A LK+
Sbjct: 79 PKYSIEECLSRGLTYSVPLKAKLKL 103
>sp|A5FIJ3|RPOB_FLAJ1 DNA-directed RNA polymerase subunit beta OS=Flavobacterium
johnsoniae (strain ATCC 17061 / DSM 2064 / UW101)
GN=rpoB PE=3 SV=1
Length = 1270
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 23 PSFSVQECLREGLEKALPLDAHLKV 47
P +++QEC+ GL ++PL A LK+
Sbjct: 78 PRYTIQECIERGLTYSVPLKARLKL 102
>sp|A6GYU0|RPOB_FLAPJ DNA-directed RNA polymerase subunit beta OS=Flavobacterium
psychrophilum (strain JIP02/86 / ATCC 49511) GN=rpoB
PE=3 SV=1
Length = 1270
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 23 PSFSVQECLREGLEKALPLDAHLKV 47
P +++QEC+ GL ++PL A LK+
Sbjct: 78 PRYTIQECIERGLTYSVPLKARLKL 102
>sp|A6KYK3|RPOB_BACV8 DNA-directed RNA polymerase subunit beta OS=Bacteroides vulgatus
(strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=rpoB PE=3
SV=1
Length = 1270
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 23 PSFSVQECLREGLEKALPLDAHLKV 47
P +S+ ECL GL ++PL A LK+
Sbjct: 79 PHYSIDECLERGLTYSVPLKAKLKL 103
>sp|Q9UUG0|FAS1_SCHPO Fatty acid synthase subunit beta OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=fas1 PE=1 SV=1
Length = 2073
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 15 RRVIGPFSPSFSVQECLREGLEKALPLDAHLKVNGKLHVSLTRIYDGKNVIVSHFNSRED 74
RR+ F+P + Q + +G + ++ + +G ++ YDG+ ++VS F +R
Sbjct: 1182 RRI---FAPRYG-QRAVVKGKDNDTVVELYETQSGNYVLAARLSYDGETIVVSMFENRN- 1236
Query: 75 LIQYLLLCLEKALPLDAHLKVNGKLHVS-LTRIYDGKNVIVSHF 117
L+K + LD K S ++ I DG+N + HF
Sbjct: 1237 -------ALKKEVHLDFLFKYEPSAGYSPVSEILDGRNDRIKHF 1273
>sp|P48284|CAH4_RAT Carbonic anhydrase 4 OS=Rattus norvegicus GN=Ca4 PE=1 SV=1
Length = 309
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 12 EARRRVIGPFSPSFSVQECLREGLEKALPLDAHLKVNGKLHVSLTRIYDGKNVIVSHFNS 71
EA R+ PF+ S + CL++ L + L A+ + G SLT + VI + F
Sbjct: 182 EALSRLSKPFTNSTVSESCLQDMLPEKKKLSAYFRYQG----SLTTPGCDETVIWTVFEE 237
Query: 72 REDLIQYLLLCLEKALPLDAHLKVNGKLHVSLTRIYDGKNVIVSHFNSR 120
+ + L K L D K+N K +V + + V SH + R
Sbjct: 238 PIKIHKDQFLEFSKKLYYDQEQKLNMKDNVRPLQPLGNRQVFRSHASGR 286
>sp|P47318|SECA_MYCGE Protein translocase subunit SecA OS=Mycoplasma genitalium (strain
ATCC 33530 / G-37 / NCTC 10195) GN=secA PE=3 SV=1
Length = 806
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 16/93 (17%)
Query: 106 IYDGKNVIVSHFNSR--------EDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAI 157
+ DGK +IV HF R L QA+ A +V I E +VA + T ++
Sbjct: 309 VRDGKVLIVDHFTGRILEGRSYSNGLQQAVQAKEYVE-----IEPENVIVATI--TYQSF 361
Query: 158 FQLFHMNFANTSVELS-SQNFFRIMRILFPPDP 189
F+L++ A + L+ S+ F +I ++ P P
Sbjct: 362 FRLYNRLAAVSGTALTESEEFLKIYNMVVVPVP 394
>sp|P38605|CAS1_ARATH Cycloartenol synthase OS=Arabidopsis thaliana GN=CAS1 PE=1 SV=2
Length = 759
Score = 30.0 bits (66), Expect = 9.8, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 20 PFSPS---FSVQECLREGLEKALPLDAHLKVNGKLHVSLTRIYDGKNVIVSHFNSREDLI 76
PFS + + + +C EGL+ AL L K + R+Y+ NVI+S N+ L
Sbjct: 471 PFSTADHGWPISDCTAEGLKAALLLSKVPKAIVGEPIDAKRLYEAVNVIISLQNADGGLA 530
Query: 77 QYLL 80
Y L
Sbjct: 531 TYEL 534
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,324,961
Number of Sequences: 539616
Number of extensions: 2723522
Number of successful extensions: 8577
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 8536
Number of HSP's gapped (non-prelim): 43
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)