Query psy15139
Match_columns 189
No_of_seqs 137 out of 403
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 21:36:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15139.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15139hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oxw_A Patatin; alpha/beta cla 98.0 9.3E-06 3.2E-10 71.8 7.8 56 98-153 136-213 (373)
2 4akf_A VIPD; transferase; 2.90 97.4 0.00013 4.5E-09 68.1 5.0 57 98-154 237-301 (577)
3 3tu3_B EXOU; type III secretio 97.0 0.0004 1.4E-08 65.9 3.9 55 98-152 305-377 (711)
4 4akf_A VIPD; transferase; 2.90 81.7 1.6 5.4E-05 40.9 5.0 57 50-106 237-300 (577)
5 3tu3_B EXOU; type III secretio 52.7 7.7 0.00026 37.0 2.9 73 49-121 304-404 (711)
6 2fm8_C Cell invasion protein S 34.4 25 0.00085 28.8 2.8 50 2-51 90-149 (240)
7 2fm9_A Cell invasion protein S 29.6 24 0.00083 28.5 1.9 50 2-51 64-123 (215)
8 1oxw_A Patatin; alpha/beta cla 20.0 38 0.0013 29.2 1.5 83 22-105 109-212 (373)
9 1g2y_A Hepatocyte nuclear fact 15.0 73 0.0025 18.3 1.4 9 71-79 22-30 (32)
10 2za4_B Barstar; protein-protei 14.3 1.4E+02 0.0049 20.1 3.2 25 115-139 9-33 (90)
No 1
>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3
Probab=98.05 E-value=9.3e-06 Score=71.80 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=45.4
Q ss_pred eEEEeeeeeCCCceEEEecCCCh------hHHHHHhhhcccccccc-----------Cc----cCCCccccC-CCCCc
Q psy15139 98 KLHVSLTRIYDGKNVIVSHFNSR------EDLIQALLASAFVPFFS-----------GF----IPKEEALVA-NLPPT 153 (189)
Q Consensus 98 ~l~is~t~~~~~~~v~VS~F~s~------~dLi~all~S~~IP~~~-----------g~----~p~dGg~~~-nlP~t 153 (189)
.+.|..+++..++.++.+.+... ..+.+|++|||.+|+|| |. .++|||+.+ |.|..
T Consensus 136 ~~~i~atd~~~~~~~~f~~~~~~~~~~~~~~l~~av~ASsA~P~~F~p~~i~~~d~~G~~~~~~~vDGGv~~~NnP~~ 213 (373)
T 1oxw_A 136 EVVISSFDIKTNKPVIFTKSNLANSPELDAKMYDISYSTAAAPTYFPPHYFVTNTSNGDEYEFNLVDGAVATVADPAL 213 (373)
T ss_dssp EEEEEEEETTTTEEEEEESSSTTTCGGGCCBHHHHHHHHHCCTTTSCCEEEEEECTTSCEEEEEEEEGGGGTCSSCHH
T ss_pred CEEEEeEECCCCCeEEEeCCCCCCCCccCchHHHHHHHHccCCcCcCcEEeeccCCCCcccceeeecCcccccCChHH
Confidence 45788888888888887777532 26999999999999988 32 689999999 99983
No 2
>4akf_A VIPD; transferase; 2.90A {Legionella pneumophila}
Probab=97.39 E-value=0.00013 Score=68.10 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=47.2
Q ss_pred eEEEeeeeeCCCceEEEecCCC-hhHHHHHhhhcccccccc-------CccCCCccccCCCCCcc
Q psy15139 98 KLHVSLTRIYDGKNVIVSHFNS-REDLIQALLASAFVPFFS-------GFIPKEEALVANLPPTV 154 (189)
Q Consensus 98 ~l~is~t~~~~~~~v~VS~F~s-~~dLi~all~S~~IP~~~-------g~~p~dGg~~~nlP~tv 154 (189)
++.+..|++..++.+..+.-.. ..++.+|++|||.+|++| |..++|||+.+|.|+..
T Consensus 237 ~L~IvATDv~TGk~v~F~~~~~~d~~l~dAVRASsAlP~~F~PV~~IdG~~yvDGGV~~N~PV~~ 301 (577)
T 4akf_A 237 NLSVVVTNQTKHELERYSEDTTPQQSIAQVVQWSGAHPVLFVPGRNAKGEYIADGGILDNMPEIE 301 (577)
T ss_dssp EEEEEEEETTTTEEEEEETTTCTTSBHHHHHHHHTCCTTTBCCEECTTCCEEECTTSSSCCCCCT
T ss_pred eEEEEEEECCCCCEEEeCCCCCCCCCHHHHHHHHhCccccccCEEeECCEEEECCCcccCCchHH
Confidence 6899999999999999554422 235899999999999988 45689999999999964
No 3
>3tu3_B EXOU; type III secretion system, SPC infectious diseases, structural genomics, center for struct genomics of infectious diseases, csgid; 1.92A {Pseudomonas aeruginosa} PDB: 4akx_B*
Probab=97.00 E-value=0.0004 Score=65.89 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=34.5
Q ss_pred eEEEeeeeeCCCce--EEEecCCCh-hHHHHHhhhcccccccc------Cc---------cCCCccccCCCCC
Q psy15139 98 KLHVSLTRIYDGKN--VIVSHFNSR-EDLIQALLASAFVPFFS------GF---------IPKEEALVANLPP 152 (189)
Q Consensus 98 ~l~is~t~~~~~~~--v~VS~F~s~-~dLi~all~S~~IP~~~------g~---------~p~dGg~~~nlP~ 152 (189)
.++|..|++..++. +..+...+. .++.+|+.|||.+|+|| |. .++|||+++|.|+
T Consensus 305 ~L~IvATNL~TGkpelvyFs~~~tPd~~I~dAVRASsSlP~vF~PV~I~G~~f~~~~e~~~YVDGGIsdNiPI 377 (711)
T 3tu3_B 305 TLNITGTAMFEGRPQLVVFNASHTPDLEVAQAAHISGSFPGVFQKVSLSDQPYQAGVEWTEFQDGGVMINVPV 377 (711)
T ss_dssp EEEEEEEEEETTEEEEEEESTTTCTTSBHHHHHHHHHHCC----------------------------CCCCG
T ss_pred eEEEEEEECCCCCcceEEeCCCCCCCchHHHHHHHHhcccccCCCEEECCccccccccCceEeecCcCCCcCH
Confidence 68999999999996 575554432 34889999999999999 55 7999999999999
No 4
>4akf_A VIPD; transferase; 2.90A {Legionella pneumophila}
Probab=81.66 E-value=1.6 Score=40.87 Aligned_cols=57 Identities=12% Similarity=0.041 Sum_probs=45.7
Q ss_pred ceEEEEEEeecCcceeeeccC-ChHHHHHHHHHhcc-----ccc-ccCceEeecCeEEEeeeee
Q psy15139 50 KLHVSLTRIYDGKNVIVSHFN-SREDLIQYLLLCLE-----KAL-PLDAHLKVNGKLHVSLTRI 106 (189)
Q Consensus 50 rL~vslT~~~~~~N~~vs~f~-S~e~LI~~L~~~l~-----~~l-P~~a~~~idG~l~is~t~~ 106 (189)
++.|..|.+..++-+..+.-+ +..++.+++++|+- +++ ..+++.|+|||+..+.|-.
T Consensus 237 ~L~IvATDv~TGk~v~F~~~~~~d~~l~dAVRASsAlP~~F~PV~~IdG~~yvDGGV~~N~PV~ 300 (577)
T 4akf_A 237 NLSVVVTNQTKHELERYSEDTTPQQSIAQVVQWSGAHPVLFVPGRNAKGEYIADGGILDNMPEI 300 (577)
T ss_dssp EEEEEEEETTTTEEEEEETTTCTTSBHHHHHHHHTCCTTTBCCEECTTCCEEECTTSSSCCCCC
T ss_pred eEEEEEEECCCCCEEEeCCCCCCCCCHHHHHHHHhCccccccCEEeECCEEEECCCcccCCchH
Confidence 799999999999999988763 34579999999654 223 3578899999999988863
No 5
>3tu3_B EXOU; type III secretion system, SPC infectious diseases, structural genomics, center for struct genomics of infectious diseases, csgid; 1.92A {Pseudomonas aeruginosa} PDB: 4akx_B*
Probab=52.75 E-value=7.7 Score=37.03 Aligned_cols=73 Identities=12% Similarity=0.279 Sum_probs=38.5
Q ss_pred CceEEEEEEeecCcc--eeeeccCC-hHHHHHHHHHhcc-----cccccCce---------EeecCeEEEeeee--eCC-
Q psy15139 49 GKLHVSLTRIYDGKN--VIVSHFNS-REDLIQYLLLCLE-----KALPLDAH---------LKVNGKLHVSLTR--IYD- 108 (189)
Q Consensus 49 grL~vslT~~~~~~N--~~vs~f~S-~e~LI~~L~~~l~-----~~lP~~a~---------~~idG~l~is~t~--~~~- 108 (189)
-.|.|..|.+.+++- +..+..++ +.++.+++++|+- +++..+++ .|+|||+..+.|. +.+
T Consensus 304 k~L~IvATNL~TGkpelvyFs~~~tPd~~I~dAVRASsSlP~vF~PV~I~G~~f~~~~e~~~YVDGGIsdNiPI~~l~d~ 383 (711)
T 3tu3_B 304 KTLNITGTAMFEGRPQLVVFNASHTPDLEVAQAAHISGSFPGVFQKVSLSDQPYQAGVEWTEFQDGGVMINVPVPEMIDK 383 (711)
T ss_dssp CEEEEEEEEEETTEEEEEEESTTTCTTSBHHHHHHHHHHCC----------------------------CCCCGGGGSCC
T ss_pred ceEEEEEEECCCCCcceEEeCCCCCCCchHHHHHHHHhcccccCCCEEECCccccccccCceEeecCcCCCcCHHHHHhC
Confidence 369999999999985 57776655 4568999999654 33456666 7999999998875 222
Q ss_pred --------CceEEEecCCChh
Q psy15139 109 --------GKNVIVSHFNSRE 121 (189)
Q Consensus 109 --------~~~v~VS~F~s~~ 121 (189)
++.+.+-.|.+..
T Consensus 384 G~~~~~l~~~~~l~v~Fe~~~ 404 (711)
T 3tu3_B 384 NFDSGPLRRNDNLILEFEGEA 404 (711)
T ss_dssp CCCSSSSCCCEEEEEEEC---
T ss_pred CCCCCcccCCCceEEEccCCC
Confidence 2455556676544
No 6
>2fm8_C Cell invasion protein SIPA; type III secretion, chaperone, translocation, protein foldin virulence, bacterial, chaperone-cell invasion C; 2.20A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=34.40 E-value=25 Score=28.79 Aligned_cols=50 Identities=24% Similarity=0.305 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHh----------cccCCCCCCCcchHHHHHHHHHhhCCchhhhhhcCce
Q psy15139 2 ITSDVLRLVGEAR----------RRVIGPFSPSFSVQECLREGLEKALPLDAHLKVNGKL 51 (189)
Q Consensus 2 ~~~~~~~~a~~~r----------~~~~g~~~p~f~l~~~l~~~l~~~lP~d~h~~~~grL 51 (189)
+.+.++++++++- ++-|||-+|.=+-.+.++..|++-|-+-+.+.++|-+
T Consensus 90 a~~~L~ki~~qYta~IikDgL~ekSAFGPWt~~tkK~~~~~e~le~kL~~i~k~~t~Gd~ 149 (240)
T 2fm8_C 90 AKTLLMKVGAEYTAQIIKDGLKEKSAFGPWLPETKKAEAKLENLEKQLLDIIKNNTGGEL 149 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCSSCSSSTTSCCSHHHHHHHHHHHHHHHHHHHHC---CC
T ss_pred HHHHHHHHHHHHHHHHHHccccccccCCCCCccchHHHHHHHHHHHHHHHHHHhcccccH
Confidence 4566788888875 4569999999999999999999988888888888876
No 7
>2fm9_A Cell invasion protein SIPA; type II secretion, virulence, bacterial, C invasion; 2.00A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=29.64 E-value=24 Score=28.50 Aligned_cols=50 Identities=24% Similarity=0.305 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHHh----------cccCCCCCCCcchHHHHHHHHHhhCCchhhhhhcCce
Q psy15139 2 ITSDVLRLVGEAR----------RRVIGPFSPSFSVQECLREGLEKALPLDAHLKVNGKL 51 (189)
Q Consensus 2 ~~~~~~~~a~~~r----------~~~~g~~~p~f~l~~~l~~~l~~~lP~d~h~~~~grL 51 (189)
+.+.++++++++- ++-|||-+|.=+-.+.++..|++-|-+-+.+.++|-+
T Consensus 64 a~~~L~ki~~qYta~i~kDgL~ekSAFGPWt~~tkK~~~~~~~le~kL~~i~~~~t~Gd~ 123 (215)
T 2fm9_A 64 AKTLLMKVGAEYTAQIIKDGLKEKSAFGPWLPETKKAEAKLENLEKQLLDIIKNNTGGEL 123 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCSSCSSSTTSCCSHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccccccccCCCCCccchHHHHHHHHHHHHHHHHHHhcccccH
Confidence 4566788888875 4569999999999999999999988888888777765
No 8
>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3
Probab=19.98 E-value=38 Score=29.20 Aligned_cols=83 Identities=16% Similarity=0.096 Sum_probs=64.2
Q ss_pred CCCcchHHHHHHHHHhhCCchhhhhhcCceEEEEEEeecCcceeeeccCCh------HHHHHHHHHhccc---cccc--C
Q psy15139 22 SPSFSVQECLREGLEKALPLDAHLKVNGKLHVSLTRIYDGKNVIVSHFNSR------EDLIQYLLLCLEK---ALPL--D 90 (189)
Q Consensus 22 ~p~f~l~~~l~~~l~~~lP~d~h~~~~grL~vslT~~~~~~N~~vs~f~S~------e~LI~~L~~~l~~---~lP~--~ 90 (189)
.|.| -.+.|++.|++.+.+........++.|..|.+..++-++++.++.. ..+.++++++.-. |.|. +
T Consensus 109 ~~~~-~~~~L~~~l~~~~~~~~l~d~~~~~~i~atd~~~~~~~~f~~~~~~~~~~~~~~l~~av~ASsA~P~~F~p~~i~ 187 (373)
T 1oxw_A 109 GPKY-DGKYLMQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKMYDISYSTAAAPTYFPPHYFV 187 (373)
T ss_dssp SCSC-CCHHHHHHHHHHHTTCBGGGCSSEEEEEEEETTTTEEEEEESSSTTTCGGGCCBHHHHHHHHHCCTTTSCCEEEE
T ss_pred cCCc-CcHHHHHHHHHHHCcCcHHHcCCCEEEEeEECCCCCeEEEeCCCCCCCCccCchHHHHHHHHccCCcCcCcEEee
Confidence 3444 3578899999999988877788899999999999999999999753 4899999997542 2332 2
Q ss_pred -----c----eEeecCeEEE-eeee
Q psy15139 91 -----A----HLKVNGKLHV-SLTR 105 (189)
Q Consensus 91 -----a----~~~idG~l~i-s~t~ 105 (189)
+ +.++|||+.. +.|.
T Consensus 188 ~~d~~G~~~~~~~vDGGv~~~NnP~ 212 (373)
T 1oxw_A 188 TNTSNGDEYEFNLVDGAVATVADPA 212 (373)
T ss_dssp EECTTSCEEEEEEEEGGGGTCSSCH
T ss_pred ccCCCCcccceeeecCcccccCChH
Confidence 3 2799999998 7663
No 9
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=14.95 E-value=73 Score=18.30 Aligned_cols=9 Identities=67% Similarity=0.767 Sum_probs=7.6
Q ss_pred ChHHHHHHH
Q psy15139 71 SREDLIQYL 79 (189)
Q Consensus 71 S~e~LI~~L 79 (189)
|||.|||+|
T Consensus 22 sKe~LiqaL 30 (32)
T 1g2y_A 22 SKEALIQAL 30 (32)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHh
Confidence 688899887
No 10
>2za4_B Barstar; protein-protein complex, endonuclease, genetically modified FOOD, hydrolase, nuclease, secreted, cytoplasm; 1.58A {Bacillus amyloliquefaciens} PDB: 1b27_D 1a19_A 1x1w_D 3da7_C 1ab7_A 1bgs_E 1brs_D 1x1u_D 1x1y_D 1b3s_D 1b2s_D 1x1x_D 1ay7_B 1bta_A 1btb_A 1b2u_D 2hxx_A*
Probab=14.29 E-value=1.4e+02 Score=20.10 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=21.8
Q ss_pred ecCCChhHHHHHhhhccccccccCc
Q psy15139 115 SHFNSREDLIQALLASAFVPFFSGF 139 (189)
Q Consensus 115 S~F~s~~dLi~all~S~~IP~~~g~ 139 (189)
+...+++++-+++--..-.|-|+|.
T Consensus 9 ~~i~~~~~~~~~l~~~l~~P~~fG~ 33 (90)
T 2za4_B 9 EQIRSISDLHQTLKKELALPEYYGE 33 (90)
T ss_dssp GGCCSHHHHHHHHHHHTTCCTTCCC
T ss_pred CCcCCHHHHHHHHHHHhCCCcccCC
Confidence 5678999999999999999999875
Done!