RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15139
(189 letters)
>gnl|CDD|132857 cd07218, Pat_iPLA2, Calcium-independent phospholipase A2;
Classified as Group IVA-1 PLA2. Calcium-independent
phospholipase A2; otherwise known as Group IVA-1 PLA2.
It contains the lipase consensus sequence
(Gly-X-Ser-X-Gly);mutagenesis experiments confirm the
role of this serine as a nucleophile. Some members of
this group show triacylglycerol lipase activity (EC
3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3
from Aedes aegypti and show acylglycerol
transacylase/lipase activity. Also includes putative
iPLA2-eta from Pediculus humanus corporis which shows
patatin-like phospholipase activity.
Length = 245
Score = 170 bits (433), Expect = 1e-53
Identities = 88/215 (40%), Positives = 111/215 (51%), Gaps = 74/215 (34%)
Query: 1 EITSDVLRLVGEARRRVIGPFSPSFSVQECLREGLEKALPLDAHLKVNGKLHVSLTRIYD 60
E+TSD LR+V EARR +GPFSPSF++Q CL EGL+K LP DAH +V+G+LH+SLTR+ D
Sbjct: 55 EMTSDFLRVVREARRHSLGPFSPSFNIQTCLLEGLQKFLPDDAHERVSGRLHISLTRVSD 114
Query: 61 GKNVIVSHFNSREDLIQYLLLCLEKALPLDAHLKVNGKLHVSLTRIYDGKNVIVSHFNSR 120
GKNVIVS F SRE+L+Q
Sbjct: 115 GKNVIVSEFESREELLQ------------------------------------------- 131
Query: 121 EDLIQALLASAFVPFFSGFIPK--------EEALVANLPP----TVKA------------ 156
ALL S F+P FSG +P + NLP T+
Sbjct: 132 -----ALLCSCFIPVFSGLLPPKFRGVRYMDGGFSDNLPTLDENTITVSPFCGESDICPR 186
Query: 157 --IFQLFHMNFANTSVELSSQNFFRIMRILFPPDP 189
QLFH+N+ANTS+ELS QN +R++RILFPP P
Sbjct: 187 DNSSQLFHINWANTSIELSRQNIYRLVRILFPPRP 221
>gnl|CDD|132843 cd07204, Pat_PNPLA_like, Patatin-like phospholipase domain
containing protein family. Members of this family share
a patain domain, initially discovered in potato tubers.
PNPLA protein members show non-specific hydrolase
activity with a variety of substrates such as
triacylglycerol, phospholipids, and retinylesters. It
contains the lipase consensus sequence
(Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be
misleading as some of the mammalian members of this
family show hydrolase, but no phospholipase activity.
Length = 243
Score = 144 bits (364), Expect = 3e-43
Identities = 74/216 (34%), Positives = 101/216 (46%), Gaps = 75/216 (34%)
Query: 1 EITSDVLRLVGEARRRVIGPFSPSFSVQECLREGLEKALPLDAHLKVNGKLHVSLTRIYD 60
E S +L++V EARRR +GP PSF++ + LR+GLEK LP DAH +G+LH+SLTR+ D
Sbjct: 56 EACSFILKVVSEARRRSLGPLHPSFNLLKILRQGLEKILPDDAHELASGRLHISLTRVSD 115
Query: 61 GKNVIVSHFNSREDLIQYLLLCLEKALPLDAHLKVNGKLHVSLTRIYDGKNVIVSHFNSR 120
G+NV+VS F+S+E
Sbjct: 116 GENVLVSEFDSKE----------------------------------------------- 128
Query: 121 EDLIQALLASAFVPFFSGFIPKE--------EALVANLPP-------TVKA--------- 156
+LIQAL+ S F+PF+ G IP + L NLP TV
Sbjct: 129 -ELIQALVCSCFIPFYCGLIPPKFRGVRYIDGGLSDNLPILDDENTITVSPFSGESDICP 187
Query: 157 ---IFQLFHMNFANTSVELSSQNFFRIMRILFPPDP 189
L +N ANTS++LS +N +R+ R LFPP
Sbjct: 188 QDKSSNLLEVNIANTSIQLSLENLYRLNRALFPPSL 223
>gnl|CDD|132859 cd07220, Pat_PNPLA2, Patatin-like phospholipase domain containing
protein 2. PNPLA2 plays a key role in hydrolysis of
stored triacylglecerols and is also known as adipose
triglyceride lipase (ATGL). Members of this family share
a patain domain, initially discovered in potato tubers.
ATGL is expressed in white and brown adipose tissue in
high mRNA levels. Mutations in PNPLA2 encoding adipose
triglyceride lipase (ATGL) leads to neutral lipid
storage disease (NLSD) which is characterized by the
accumulation of triglycerides in multiple tissues. ATGL
mutations are also commonly associated with severe forms
of skeletal- and cardio-myopathy. This family includes
patatin-like proteins: TTS-2.2 (transport-secretion
protein 2.2), PNPLA2 (Patatin-like phospholipase
domain-containing protein 2), and iPLA2-zeta
(Calcium-independent phospholipase A2) from Homo
sapiens.
Length = 249
Score = 116 bits (293), Expect = 1e-32
Identities = 62/216 (28%), Positives = 94/216 (43%), Gaps = 75/216 (34%)
Query: 1 EITSDVLRLVGEARRRVIGPFSPSFSVQECLREGLEKALPLDAHLKVNGKLHVSLTRIYD 60
E + V+R+ EAR+R +GP PSF
Sbjct: 61 ECGASVIRVAKEARKRFLGPLHPSF----------------------------------- 85
Query: 61 GKNVIVSHFNSREDLIQYLLLCLEKALPLDAHLKVNGKLHVSLTRIYDGKNVIVSHFNSR 120
+L++ L L + LP +AH +G+L +SLTR+ DG+NV+VS FNS+
Sbjct: 86 -------------NLVKILRDGLLRTLPENAHELASGRLGISLTRVSDGENVLVSDFNSK 132
Query: 121 EDLIQALLASAFVPFFSGFIPK--------EEALVANLPP-------TVKAI-------- 157
E+LIQAL+ S F+P + G IP + + NLP TV
Sbjct: 133 EELIQALVCSCFIPVYCGLIPPTLRGVRYVDGGISDNLPQYELKNTITVSPFSGESDICP 192
Query: 158 ----FQLFHMNFANTSVELSSQNFFRIMRILFPPDP 189
+ F NTS++ + +N +R+ + LFPP+P
Sbjct: 193 RDSSTNFHELRFTNTSIQFNLRNLYRLSKALFPPEP 228
>gnl|CDD|132860 cd07221, Pat_PNPLA3, Patatin-like phospholipase domain containing
protein 3. PNPLA3 is a triacylglycerol lipase that
mediates triacylglycerol hydrolysis in adipocytes and is
an indicator of the nutritional state. PNPLA3 is also
known as adiponutrin (ADPN) or iPLA2-epsilon. Human
adiponutrins are bound to the cell membrane of
adipocytes and show transacylase, TG hydrolase, and PLA2
activity. This family includes patatin-like proteins:
ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like
phospholipase domain-containing protein 3), and
iPLA2-epsilon (Calcium-independent phospholipase A2)
from Homo sapiens.
Length = 252
Score = 104 bits (261), Expect = 8e-28
Identities = 59/217 (27%), Positives = 95/217 (43%), Gaps = 80/217 (36%)
Query: 1 EITSDVLRLVGEARRRVIGPFSPSFSVQECLREGLEKALPLDAHLKVNGKLHVSLTRIYD 60
+I D++R AR R IG PSF++ + LR+GL++ LP + H ++GK+ +SLTR+ D
Sbjct: 60 QILMDLVR---SARSRNIGILHPSFNLSKHLRDGLQRHLPDNVHQLISGKMCISLTRVSD 116
Query: 61 GKNVIVSHFNSREDLIQYLLLCLEKALPLDAHLKVNGKLHVSLTRIYDGKNVIVSHFNSR 120
G+NV+VS F+S+++++
Sbjct: 117 GENVLVSDFHSKDEVVD------------------------------------------- 133
Query: 121 EDLIQALLASAFVPFFSGFIPK--------EEALVANLP--------------------P 152
AL+ S F+PFFSG IP + + N+P P
Sbjct: 134 -----ALVCSCFIPFFSGLIPPSFRGVRYVDGGVSDNVPFFDAKTTITVSPFYGEYDICP 188
Query: 153 TVKAIFQLFHMNFANTSVELSSQNFFRIMRILFPPDP 189
VK+ H++F S+ L ++N + + R LFPPD
Sbjct: 189 KVKSTN-FLHVDFTKLSLRLCTENLYLLTRALFPPDV 224
>gnl|CDD|132858 cd07219, Pat_PNPLA1, Patatin-like phospholipase domain containing
protein 1. Members of this family share a patatin
domain, initially discovered in potato tubers. Some
members of PNPLA1 subfamily do not have the lipase
consensus sequence Gly-X-Ser-X-Gly which is essential
for hydrolase activity. This family includes PNPLA1
from Homo sapiens and Gallus gallus. Currently, there is
no literature available on the physiological role,
structure, or enzymatic activity of PNPLA1. It is
expressed in various human tissues in low mRNA levels.
Length = 382
Score = 92.6 bits (230), Expect = 1e-22
Identities = 49/143 (34%), Positives = 70/143 (48%), Gaps = 31/143 (21%)
Query: 75 LIQYLLLCLEKALPLDAHLKVNGKLHVSLTRIYDGKNVIVSHFNSREDLIQALLASAFVP 134
++Q + L + LP D++ GKLHVSLTR+ DG+NV+VS F S+E+LI+AL S FVP
Sbjct: 95 MVQMMRQFLYRVLPEDSYKVATGKLHVSLTRVTDGENVVVSEFTSKEELIEALYCSCFVP 154
Query: 135 FFSGFIPK---------------------EEALVAN--------LPPTVKAIFQLFHMNF 165
+ G IP +++ + P AIF F +
Sbjct: 155 VYCGLIPPTYRGVRYIDGGFTGMQPCSFWTDSITISTFSGQQDICPRDCPAIFHDFRI-- 212
Query: 166 ANTSVELSSQNFFRIMRILFPPD 188
N S + S +N R+ LFPPD
Sbjct: 213 FNCSFQFSLENIARMTHALFPPD 235
>gnl|CDD|132861 cd07222, Pat_PNPLA4, Patatin-like phospholipase domain containing
protein 4. PNPLA4, also known as GS2 (gene sequence-2),
shows both lipase and transacylation activities. GS2
lipase is expressed in various tissues, predominantly in
muscle and adipocytes tissue. It is also expressed in
keratinocytes and shows retinyl ester hydrolase,
acylglycerol, TG hydrolase, and PLA2 activity. This
family includes patatin-like proteins: GS2 from mammals,
PNPLA4 (Patatin-like phospholipase domain-containing
protein 4), and iPLA2-eta (Calcium-independent
phospholipase A2) from Homo sapiens.
Length = 246
Score = 88.2 bits (219), Expect = 1e-21
Identities = 61/199 (30%), Positives = 89/199 (44%), Gaps = 41/199 (20%)
Query: 1 EITSDVLRLVGEARRRVIGPFSPSFSVQECLREGLEKALPLDAHLKVNGKLHVSLTRIYD 60
E + E R++ G +P + LR+G+E LP DAH N +LHVS+T +
Sbjct: 57 ECKEFTYKFAEEVRKQRFGAMTPGYDFMARLRKGIESILPTDAHELANDRLHVSITNLKT 116
Query: 61 GKNVIVSHFNSREDLIQYLLL-CLEKALPLDAHLK---------VNGKLHVSLTRIYDGK 110
KN +VS+F SREDLI+ LL C +P+ A LK ++G SL + G+
Sbjct: 117 RKNYLVSNFTSREDLIKVLLASCY---VPVYAGLKPVEYKGQKWIDGGFTNSLPVLPVGR 173
Query: 111 NVIVSHFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAIFQLFHMNFANTSV 170
+ VS F+ R D+ P K L ++ FAN +
Sbjct: 174 TITVSPFSGRADIC---------------------------PQDKGQLDL-YVRFANQDI 205
Query: 171 ELSSQNFFRIMRILFPPDP 189
LS N R+ + LFPP+
Sbjct: 206 MLSLANLVRLNQALFPPNR 224
>gnl|CDD|132862 cd07223, Pat_PNPLA5-mammals, Patatin-like phospholipase domain
containing protein 5. PNPLA5, also known as GS2L
(GS2-like), plays a role in regulation of adipocyte
differentiation. PNPLA5 is expressed in brain tissue in
high mRNA levels and low levels in liver tissue. There
is no concrete evidence in support of the enzymatic
activity of GS2L. This family includes patatin-like
proteins: GS2L (GS2-like) and PNPLA5 (Patatin-like
phospholipase domain-containing protein 5) reported
exclusively in mammals.
Length = 405
Score = 82.7 bits (204), Expect = 6e-19
Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 27/134 (20%)
Query: 83 LEKALPLDAHLKVNGKLHVSLTRIYDGKNVIVSHFNSREDLIQALLASAFVPFFSGFIPK 142
L+++LP + H+ + +L +S+TR DG+N IV+ F +R++LIQAL+ + + PF+ G IP
Sbjct: 100 LQESLPPNIHILASQRLGISMTRWPDGRNFIVTDFATRDELIQALICTLYFPFYCGIIPP 159
Query: 143 E--------EALVANLP----PTVKAI---------------FQLFHMNFANTSVELSSQ 175
E AL NLP P+ + L +N N S ++S++
Sbjct: 160 EFRGERYIDGALSNNLPFSDCPSTITVSPFHGTVDICPQSTSANLHELNAFNASFQISTR 219
Query: 176 NFFRIMRILFPPDP 189
NFF ++ L PP P
Sbjct: 220 NFFLGLKCLIPPKP 233
>gnl|CDD|132837 cd07198, Patatin, Patatin-like phospholipase. Patatin is a storage
protein of the potato tuber that shows Phospholipase A2
activity (PLA2; EC 3.1.1.4). Patatin catalyzes the
nonspecific hydrolysis of phospholipids, glycolipids,
sulfolipids, and mono- and diacylglycerols, thereby
showing lipid acyl hydrolase activity. The active site
includes an oxyanion hole with a conserved GGxR motif;
it is found in almost all the members of this family.
The catalytic dyad is formed by a serine and an
aspartate. Patatin belongs to the alpha-beta hydrolase
family which is identified by a characteristic
nucleophile elbow with a consensus sequence of
Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu =
nucleophile). Members of this family have been found
also in vertebrates. This family includes PNPLA (1-9),
TGL (3-5), ExoU-like, and SDP1-like subfamilies. There
are some additional hypothetical proteins included in
this family.
Length = 172
Score = 65.8 bits (161), Expect = 8e-14
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 75 LIQYLLLCLEKALPLDAHLKVNGKLHVSLTRIYDGKNVIVSHFNSREDLIQALLASAFVP 134
L+ L L ALP DAH +GKL +SLTR+ DG+NV+VS S+ +L A+ AS+ +P
Sbjct: 77 LLGILRQPLLSALPDDAHEDASGKLFISLTRLTDGENVLVS-DTSKGELWSAVRASSSIP 135
Query: 135 FFSGFIP 141
+ G +P
Sbjct: 136 GYFGPVP 142
Score = 64.7 bits (158), Expect = 2e-13
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 1 EITSDVLRLVGEARRRVIGPFSPSFSVQECLREGLEKALPLDAHLKVNGKLHVSLTRIYD 60
E +LRL E R R G F P+ + LR+ L ALP DAH +GKL +SLTR+ D
Sbjct: 51 EALLLLLRLSREVRLRFDGAFPPTGRLLGILRQPLLSALPDDAHEDASGKLFISLTRLTD 110
Query: 61 GKNVIVSHFNSREDLIQYLL 80
G+NV+VS S+ +L +
Sbjct: 111 GENVLVS-DTSKGELWSAVR 129
>gnl|CDD|132863 cd07224, Pat_like, Patatin-like phospholipase. Patatin-like
phospholipase. This family consists of various patatin
glycoproteins from plants. The patatin protein accounts
for up to 40% of the total soluble protein in potato
tubers. Patatin is a storage protein, but it also has
the enzymatic activity of lipid acyl hydrolase,
catalysing the cleavage of fatty acids from membrane
lipids. Members of this family have been found also in
vertebrates.
Length = 233
Score = 64.3 bits (157), Expect = 6e-13
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 6/60 (10%)
Query: 83 LEKALPLDAHLKVN-GKLHVSLTRI---YDGKNVIVSHFNSREDLIQALLASAFVPFFSG 138
L+K LP DAH + N G++ V++T++ G V S F+S+ DLI ALLAS +P +
Sbjct: 83 LDKTLPDDAHERCNRGRIRVAVTQLFPVPRGLLV--SSFDSKSDLIDALLASCNIPGYLA 140
Score = 52.3 bits (126), Expect = 1e-08
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 25 FSVQECLREGLEKALPLDAHLKVN-GKLHVSLTRI---YDGKNVIVSHFNSREDLIQYLL 80
F + LR+ L+K LP DAH + N G++ V++T++ G VS F+S+ DLI LL
Sbjct: 73 FRLGGVLRDELDKTLPDDAHERCNRGRIRVAVTQLFPVPRGLL--VSSFDSKSDLIDALL 130
>gnl|CDD|132836 cd01819, Patatin_and_cPLA2, Patatins and Phospholipases.
Patatin-like phospholipase. This family consists of
various patatin glycoproteins from plants. The patatin
protein accounts for up to 40% of the total soluble
protein in potato tubers. Patatin is a storage protein,
but it also has the enzymatic activity of a lipid acyl
hydrolase, catalyzing the cleavage of fatty acids from
membrane lipids. Members of this family have also been
found in vertebrates. This family also includes the
catalytic domain of cytosolic phospholipase A2 (PLA2; EC
3.1.1.4) hydrolyzes the sn-2-acyl ester bond of
phospholipids to release arachidonic acid. At the active
site, cPLA2 contains a serine nucleophile through which
the catalytic mechanism is initiated. The active site is
partially covered by a solvent-accessible flexible lid.
cPLA2 displays interfacial activation as it exists in
both "closed lid" and "open lid" forms.
Length = 155
Score = 53.2 bits (128), Expect = 2e-09
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 97 GKLHVSLTRIYDGKNVIVSHFNSREDLIQALLASAFVPFFSGFIP 141
GKL VS T + G+NV+VS F S+E+LI+AL AS P + G IP
Sbjct: 66 GKLWVSFTPVTAGENVLVSRFVSKEELIRALFASGSWPSYFGLIP 110
Score = 40.9 bits (96), Expect = 8e-05
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 22 SPSFSVQECLREGLEKALPLDAHLKVNGKLHVSLTRIYDGKNVIVSHFNSREDLIQYLLL 81
PS S+ R+ LE+AL +GKL VS T + G+NV+VS F S+E+LI+ L
Sbjct: 47 PPSSSLDNKPRQSLEEAL--------SGKLWVSFTPVTAGENVLVSRFVSKEELIRALFA 98
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain.
Length = 152
Score = 33.4 bits (77), Expect = 0.032
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 71 SREDLIQYLLLCLEKALPLDAHLKVNGKLHVSLTRIYDGKNVIVSHFNSRE-DLIQALLA 129
S E+L+++L+L LE+AL L ++ G +T I D K + +S+ + ++ +L
Sbjct: 30 SLEELVRFLVLVLERALLLLPEGQIEG-----ITVIIDMKGLSLSNMDKWPISFLKKILK 84
Query: 130 SAFVPFFSGFIPK--EEALVANLPPTVKAIFQLFH 162
P+ + L+ N P I++L
Sbjct: 85 -----ILQDNYPERLGKILIVNAPWIFNVIWKLIK 114
>gnl|CDD|132847 cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to
yjju protein of Escherichia coli. Patatin-like
phospholipase similar to yjju protein of Escherichia
coli. This family predominantly consists of bacterial
patatin glycoproteins, and some representatives from
eukaryotes and archaea. The patatin protein accounts
for up to 40% of the total soluble protein in potato
tubers. Patatin is a storage protein, but it also has
the enzymatic activity of a lipid acyl hydrolase,
catalyzing the cleavage of fatty acids from membrane
lipids. Members of this family have also been found in
vertebrates.
Length = 266
Score = 33.4 bits (77), Expect = 0.054
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 83 LEKALPLDAH--LKVNGKLHVSLTRIYDGKNVIVSHFNSREDLIQALLASAFVPFFSGFI 140
+ P D + +V T G+ V + +DL+ AL AS+ +P +
Sbjct: 88 PDGLDPFDFEAFAASPARFYVVATDADTGEAVYFDKPDILDDLLDALRASSALPGLFPPV 147
>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like
dehydrogenases. D-Mandelate dehydrogenase (D-ManDH),
identified as an enzyme that interconverts
benzoylformate and D-mandelate, is a D-2-hydroxyacid
dehydrogenase family member that catalyzes the
conversion of c3-branched 2-ketoacids. D-ManDH exhibits
broad substrate specificities for 2-ketoacids with large
hydrophobic side chains, particularly those with
C3-branched side chains. 2-hydroxyacid dehydrogenases
catalyze the conversion of a wide variety of D-2-hydroxy
acids to their corresponding keto acids. The general
mechanism is (R)-lactate + acceptor to pyruvate +
reduced acceptor. Glycerate dehydrogenase catalyzes the
reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH
+ H+. Formate/glycerate and related dehydrogenases of
the D-specific 2-hydroxyacid dehydrogenase superfamily
include groups such as formate dehydrogenase, glycerate
dehydrogenase, L-alanine dehydrogenase, and
S-adenosylhomocysteine hydrolase. Despite often low
sequence identity, these proteins typically have a
characteristic arrangement of 2 similar subdomains of
the alpha/beta Rossmann fold NAD+ binding form. The NAD+
binding domain is inserted within the linear sequence of
the mostly N-terminal catalytic domain, which has a
similar domain structure to the internal NAD binding
domain. Structurally, these domains are connected by
extended alpha helices and create a cleft in which NAD
is bound, primarily to the C-terminal portion of the 2nd
(internal) domain.
Length = 321
Score = 31.7 bits (73), Expect = 0.19
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 111 NVIVSHFNSREDLIQALLASAFVPF---------FSGFIPKEEALVANLPPTVKAI 157
VI +RE+ I+AL + F P +E L++ LPP++K I
Sbjct: 25 EVIYPTSGTREEFIEALKEGKYGDFVAIYRTFGSAGETGPFDEELISPLPPSLKII 80
>gnl|CDD|227013 COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase
superfamily [General function prediction only].
Length = 292
Score = 31.2 bits (71), Expect = 0.26
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 84 EKALPLDAHLKVN--GKLHVSLTRIYDGKNVIVSHFNSREDLIQALLASAFVPFFS 137
+K P D GK T DG+ V + + + AS+ +PF+S
Sbjct: 102 QKLFPFDFDTFSQDKGKFFYMATCRQDGEAVYYFL-PDVFNWLDVIRASSAIPFYS 156
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 30.7 bits (70), Expect = 0.41
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Query: 30 CLREGLEKALPLDAHLKVNGKLHVSLTRIYDGKNVIVSHFNSREDLIQYLLLCLEKALPL 89
+R G A PL L V+ + SL +N+ ED + LL L+KAL L
Sbjct: 358 AVRAGHHCAQPLHRLLGVDATIRASL-----------HLYNTEED-VDRLLEALKKALAL 405
>gnl|CDD|224666 COG1752, RssA, Predicted esterase of the alpha-beta hydrolase
superfamily [General function prediction only].
Length = 306
Score = 29.3 bits (66), Expect = 1.0
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 14/66 (21%)
Query: 97 GKLHVSLTRIYDGKNVIVSHFNSREDLIQALLASAFVPFFSGFIPKE--------EALVA 148
L+V T + G+ V+ S L +A+ AS +P F P E ++
Sbjct: 125 PLLYVVATDLLTGREVV----FSEGSLAEAVRASCSIPGV--FPPVEIDGRLLVDGGVLN 178
Query: 149 NLPPTV 154
N+P ++
Sbjct: 179 NVPVSL 184
>gnl|CDD|223661 COG0588, GpmA, Phosphoglycerate mutase 1 [Carbohydrate transport
and metabolism].
Length = 230
Score = 28.8 bits (65), Expect = 1.5
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 29 ECLREGLEKALPLDAHLKVNGKLHVSLTRIYDGKNV-IVSHFNSREDLIQYLL 80
E L++ +E+ LP + GKNV IV+H NS LI+YL
Sbjct: 150 ESLKDTVERVLPY--------WEDDIAPNLKSGKNVLIVAHGNSLRALIKYLE 194
>gnl|CDD|216671 pfam01734, Patatin, Patatin-like phospholipase. This family
consists of various patatin glycoproteins from plants.
The patatin protein accounts for up to 40% of the total
soluble protein in potato tubers. Patatin is a storage
protein but it also has the enzymatic activity of lipid
acyl hydrolase, catalyzing the cleavage of fatty acids
from membrane lipids. Members of this family have been
found also in vertebrates.
Length = 189
Score = 27.9 bits (62), Expect = 2.5
Identities = 13/54 (24%), Positives = 19/54 (35%)
Query: 83 LEKALPLDAHLKVNGKLHVSLTRIYDGKNVIVSHFNSREDLIQALLASAFVPFF 136
L L + + V S + + EDL ALLAS+ +P
Sbjct: 110 LAARLGILLVILVTPATVGSAALGTRALILFRDDLDPDEDLADALLASSALPGL 163
>gnl|CDD|237573 PRK13963, PRK13963, unkown domain/putative metalloprotease fusion
protein; Provisional.
Length = 258
Score = 28.2 bits (63), Expect = 2.7
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 26/93 (27%)
Query: 31 LREGLEKALPLDAHLKV------NGKLHVSLTRIYDGK----NVIVSHFNSRED--LIQY 78
+ E +E AL DA L V G+ +L R Y GK NV+ + D +I
Sbjct: 136 IAEWIEPALFADAQLTVRFVGEEEGR---TLNRGYRGKDYATNVLTFAYAEEPDGPVIGD 192
Query: 79 LLLCL--------EKALPLDAH---LKVNGKLH 100
L+LC E+ PL+AH L V+G LH
Sbjct: 193 LVLCCPVVEKEAREQGKPLEAHYAHLLVHGALH 225
>gnl|CDD|239163 cd02762, MopB_1, The MopB_1 CD includes a group of related
uncharacterized bacterial molybdopterin-binding
oxidoreductase-like domains with a putative N-terminal
iron-sulfur [4Fe-4S] cluster binding site and
molybdopterin cofactor binding site. These members
belong to the molybdopterin_binding (MopB) superfamily
of proteins.
Length = 539
Score = 28.1 bits (63), Expect = 3.5
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 150 LPPTVKAIFQLFHMNFANTSVELSSQNFFRIMRILFPPDP 189
LPP + + H F N +N FR R LFPP P
Sbjct: 426 LPPASQ--LEKPHATFFNL---EFPRNAFRYRRPLFPPPP 460
>gnl|CDD|236928 PRK11552, PRK11552, putative DNA-binding transcriptional regulator;
Provisional.
Length = 225
Score = 27.3 bits (61), Expect = 4.6
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 16/85 (18%)
Query: 109 GKNV--IVSHFNSREDLIQA-------LLASAFVPFFSGFIPKEEALVANLPPTVKAIFQ 159
G+N+ I +F S+EDL A + F P + E L A P AI +
Sbjct: 43 GQNIAAITYYFGSKEDLYLAVAQWIADFIGEQFRPHAE----EAERLFAQPAPDRAAIRE 98
Query: 160 LFHMNFANTS---VELSSQNFFRIM 181
L N + + N + +
Sbjct: 99 LILRACLNMIKLLTQDDTVNLSKFI 123
>gnl|CDD|226207 COG3682, COG3682, Predicted transcriptional regulator
[Transcription].
Length = 123
Score = 26.5 bits (59), Expect = 5.5
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 47 VNGKLHVSLTRIYDGKNV-IVSHFNSREDLIQYLLLCLEKAL 87
V G+ L +I DG +V+HF +E L + L+ L
Sbjct: 75 VAGESQDLLDKICDGGLASLVAHFAEKEKLTADEIEALKAIL 116
>gnl|CDD|216067 pfam00696, AA_kinase, Amino acid kinase family. This family
includes kinases that phosphorylate a variety of amino
acid substrates, as well as uridylate kinase and
carbamate kinase. This family includes: Aspartokinase
EC:2.7.2.4, Acetylglutamate kinase EC:2.7.2.8, Glutamate
5-kinase EC:2.7.2.11, Uridylate kinase EC:2.7.4.-,
Carbamate kinase EC:2.7.2.2.
Length = 230
Score = 27.0 bits (60), Expect = 6.0
Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 11/99 (11%)
Query: 44 HLKVNGKLHVSLTRIYDGKNVIVSHFNSREDLIQYLLLCLEKALPLDAHLKVNGKLHVSL 103
L + R G +V +L + ++ E+ L A V+L
Sbjct: 47 KLLAAYGIEAGFVRHTAGATGLVLEAQLAAELNRIVVSLGER---LGARA-------VAL 96
Query: 104 TRIYDGKNVIVSHFNSREDLIQALLASAFVPFFSGFIPK 142
G + E I+ LL + VP +GF +
Sbjct: 97 LLSDGGLPAVRLDLVDTE-AIKELLEAGVVPVITGFGGE 134
>gnl|CDD|169215 PRK08091, PRK08091, ribulose-phosphate 3-epimerase; Validated.
Length = 228
Score = 26.8 bits (59), Expect = 6.2
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 19 GPFSPSFSVQECLREGLEKALPLDAHLKVNGKLHVSLTRIYDGKNVIVSHFNSREDL--- 75
G FSP F+V + D HL V + V+ + G +++ DL
Sbjct: 49 GQFSPFFTVGAIAIKQFPTHCFKDVHLMVRDQFEVAKACVAAGADIVTLQVEQTHDLALT 108
Query: 76 IQYL 79
I++L
Sbjct: 109 IEWL 112
>gnl|CDD|237168 PRK12668, PRK12668, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 581
Score = 27.2 bits (61), Expect = 6.8
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 123 LIQALLASAFVPFFSGFIPK 142
L+ AL SAF P FSGF+ K
Sbjct: 342 LVGALSISAF-PLFSGFVSK 360
>gnl|CDD|220893 pfam10876, DUF2669, Protein of unknown function (DUF2669). This
family of proteins has no known function.
Length = 133
Score = 26.0 bits (57), Expect = 9.5
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 108 DGKNVIVS------HFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKA 156
DGK +S HFN+ + +L F+ F AL++N+PP + A
Sbjct: 77 DGKTYRLSPDRFNQHFNTYRGHLLPVLKEGLKYQFADFFIGGGALLSNMPPNLAA 131
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.140 0.407
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,906,390
Number of extensions: 936408
Number of successful extensions: 1296
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1286
Number of HSP's successfully gapped: 62
Length of query: 189
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 98
Effective length of database: 6,901,388
Effective search space: 676336024
Effective search space used: 676336024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.2 bits)