RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15139
(189 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 2e-06
Identities = 26/166 (15%), Positives = 58/166 (34%), Gaps = 48/166 (28%)
Query: 8 RLVGEARRRVIGPFSPSFSVQECLREGLEKAL-PLDAHLKVNGKLHVSLTRIYDG-KNVI 65
++ ++ G SP S+ +E ++ + ++HL ++ +SL +G KN++
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL---VNGAKNLV 378
Query: 66 VS---------------------------HFNSREDLIQYLLL---------CLEKALPL 89
VS F+ R+ L L A L
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 90 ------DAHLKVNGK-LHVSLTRIYDGKNVIVSHFNSREDLIQALL 128
++ N K + + + +DG ++ V + E ++ ++
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII 484
Score = 33.9 bits (77), Expect = 0.027
Identities = 38/187 (20%), Positives = 66/187 (35%), Gaps = 40/187 (21%)
Query: 3 TSDVLRLV--GEARRRVI----GPFSPSFSVQECLRE------GLEKAL--PLDAHLKVN 48
S + R V G A+ I G F +E LR+ L L L
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYF--EE-LRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 49 GKLHVSLTRIY-DGKNVI--VSHFNSREDLIQYLLLCLEKALPL-----DAH----LKVN 96
+ + +++ G N++ + + ++ D YLL + PL AH K+
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPD-KDYLLSI-PISCPLIGVIQLAHYVVTAKLL 256
Query: 97 GKLHVSLTRIYDG-----KNVIVSHF----NSREDLIQALLASAFVPFFSGFIPKEEALV 147
G L G + ++ + +S E ++ + V FF G E
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 148 ANLPPTV 154
+LPP++
Sbjct: 317 TSLPPSI 323
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter
pomeroyi DSS, structural genomics, PSI-2, protein
structure initiative; HET: MES; 1.90A {Silicibacter
pomeroyi}
Length = 194
Score = 31.1 bits (71), Expect = 0.12
Identities = 9/73 (12%), Positives = 22/73 (30%), Gaps = 15/73 (20%)
Query: 116 HFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPT--VKAIFQLFHMN--------- 164
HF ++++++ ++ + P + + L MN
Sbjct: 48 HFKTKDEILAEVIRLRLARTAQML---ADWQGTGDSPRARIASFIDLMIMNRAKITRYGC 104
Query: 165 -FANTSVELSSQN 176
+ ELS +
Sbjct: 105 PVGSLCTELSKLD 117
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.22
Identities = 21/140 (15%), Positives = 41/140 (29%), Gaps = 28/140 (20%)
Query: 12 EARRRVIGPF--SPSFSVQECLREGLEKALP-LDAHLKV-------NGKLHVS-LTRIYD 60
R+ VQ+ + E L L + +K ++++ R+Y+
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 61 GKNVIVSHFNSREDLIQYLLLCLEKALPLDAHLKVNGKLHVSLTRIYDGKNVIVSHFNSR 120
V + SR L L + P ++ ++G L GK +
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRP-AKNVLIDGVLGS-------GKTWVA------ 167
Query: 121 EDLIQALLASAFVPFFSGFI 140
+ L+ I
Sbjct: 168 ---LDVCLSYKVQCKMDFKI 184
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory
proteins, DNA-binding, DNA binding 3-helical bundle
fold; 1.80A {Novosphingobium aromaticivorans}
Length = 212
Score = 30.7 bits (69), Expect = 0.23
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 15/78 (19%)
Query: 116 HFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPT------VKAIFQLFHMNFANTS 169
+F +REDL++A+ F P E+ L ++LPP F + +
Sbjct: 51 YFETREDLMEAIADYWFHPMVEIM---EDVLASDLPPRRKMYEFFARRFVVMRRKWEADP 107
Query: 170 VELSSQNFFRIMRILFPP 187
V + +
Sbjct: 108 V------KLQTYIEVGND 119
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif,
signaling protein, directed evoluti SEC14, phospholipid
transporter, lipid; HET: PEE; 1.80A {Saccharomyces
cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Length = 320
Score = 30.6 bits (69), Expect = 0.25
Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 68 HFNSREDLIQYLLLCLEKAL--PLDAHLKVNGKLHVSLTRIYDGKNVIVSHFNSREDLIQ 125
+ + +++ L+ E + A + G L + + D K + +S+ I+
Sbjct: 148 KITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIK 207
Query: 126 ALL 128
+
Sbjct: 208 DVA 210
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding
protein, peripheral golgi membrane protein, phospholipid
exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae}
SCOP: a.5.3.1 c.13.1.1
Length = 296
Score = 30.5 bits (69), Expect = 0.27
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 71 SREDLIQYLLLCLEKA--LPLDAHLKVNGKLHVSLTRIYDGKNVIVSHFNSREDLIQALL 128
S E +++ L+ E L A + G L + I D K + +S S ++
Sbjct: 136 SEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREAS 195
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump,
transcription regulation, transcriptional repressor, DNA
binding; 2.00A {Stenotrophomonas maltophilia} PDB:
3p9t_A*
Length = 219
Score = 30.1 bits (68), Expect = 0.32
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 116 HFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAIFQLFHMNFANTSVELSSQ 175
HF ++ +++ A++ +PF E V + + +F S + +
Sbjct: 51 HFKNKSEVLAAIVERVHLPFMQEL---ERTSTDQRDTPVHDLRAVMIHSFIELSEDERLR 107
Query: 176 NFFRIM 181
IM
Sbjct: 108 KTMEIM 113
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol
biosynthesis, oxidized vitamin E, lipid-binding,
transport, transcription regulation; HET: VTQ; 1.95A
{Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB:
1o6u_A* 1olm_E*
Length = 403
Score = 30.3 bits (68), Expect = 0.40
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 9/96 (9%)
Query: 71 SREDLIQYLLLCLEKALP-LDAHLKVNGKLHVSLTRIYDGKNVIVSHFNS--REDLIQAL 127
S++DL++ + E L G+ ++T IYD + + + H E + L
Sbjct: 116 SKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFL 175
Query: 128 -LASAFVPFFSGFIPKEEALVANLPPTVKAIFQLFH 162
+ P + V P + L
Sbjct: 176 CMFEENYPETLKRL-----FVVKAPKLFPVAYNLIK 206
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural
genomics, TETR/CCRR FA helix turn helix DNA binding
domain, PSI; 2.20A {Salmonella typhimurium} SCOP:
a.4.1.9 a.121.1.1
Length = 224
Score = 29.2 bits (65), Expect = 0.56
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 110 KNVIVSHFNSREDLIQALLASAFVPFFSGFIP---KEEALVANLPPTVKAIFQLFHMNFA 166
I +F S+EDL A F P K E L + P AI +L +
Sbjct: 45 IAAITYYFGSKEDLYLACAQWIADFLGEKFRPHAEKAERLFSQPAPDRDAIRELILLACK 104
Query: 167 NTSVELSSQNFFRIMRILF 185
N + L+ ++ + + +
Sbjct: 105 NMIMLLTQEDTVNLSKFIS 123
>3npi_A TETR family regulatory protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI; 2.96A {Corynebacterium diphtheriae}
Length = 251
Score = 29.4 bits (66), Expect = 0.59
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 9/61 (14%)
Query: 110 KNVIVSHFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPT------VKAIFQLFHM 163
K +I HF + L L A EE +A+ P V+A+F +
Sbjct: 52 KRMIHYHFGDKRGLYICCLEEAVRRLRPTA---EEMYLASAVPVEGVRTIVEAVFHRYVQ 108
Query: 164 N 164
+
Sbjct: 109 H 109
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical
bundle, tetracyclin repressor-like structural genomics;
2.60A {Syntrophus aciditrophicus}
Length = 216
Score = 28.9 bits (65), Expect = 0.75
Identities = 6/68 (8%), Positives = 17/68 (25%), Gaps = 10/68 (14%)
Query: 116 HFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAIFQLFHMNFANTSVELSSQ 175
+F +R+ L+ ++ E + + + L + V
Sbjct: 50 YFKTRDSLLDTIIEERIGRIIDMI---WEPVTGEEDDPLIMVRDLVN-----RIVNTCET 101
Query: 176 N--FFRIM 181
+
Sbjct: 102 MLWLPSLW 109
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding
motif, structural genomics, PSI-2, Pro structure
initiative; 2.19A {Streptomyces coelicolor} SCOP:
a.4.1.9 a.121.1.1
Length = 200
Score = 28.9 bits (65), Expect = 0.88
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 16/74 (21%)
Query: 116 HFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPT--VKAIFQLFHMN--------- 164
HF ++E L + L AFV F+ + E +A P ++A+
Sbjct: 52 HFGTKETLQISTLDKAFVDFWHRVV---EPALAEPPGLRRLRAVCANSVGYLEEPLLPGG 108
Query: 165 --FANTSVELSSQN 176
E +
Sbjct: 109 CLLTAALSEYDGRP 122
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Length = 197
Score = 28.4 bits (64), Expect = 1.1
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 116 HFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAIFQLFHMN----------- 164
+F S+E QALL F + + + A N + + +Q + N
Sbjct: 50 YFKSKEQFGQALLEDYFRVYLADMDQRFSAPGLNARERLMSYWQKWLDNACPPCDEQRCL 109
Query: 165 FANTSVELSSQN 176
S E++ +
Sbjct: 110 VVKLSAEVADLS 121
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Length = 191
Score = 28.5 bits (64), Expect = 1.1
Identities = 9/71 (12%), Positives = 19/71 (26%), Gaps = 10/71 (14%)
Query: 116 HFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAIFQLFHMN----------F 165
HF S+EDL A+++ + + ++ F
Sbjct: 50 HFPSKEDLGVAVISWHTDKIAAVLSDISNNSSLSAKEKIQKFFDAILTLTYNSENKMCLG 109
Query: 166 ANTSVELSSQN 176
+ + S
Sbjct: 110 GMFASDFQSLP 120
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural
genomics, PSI-2, protein structure initiative; 1.38A
{Streptomyces coelicolor A3}
Length = 221
Score = 28.3 bits (63), Expect = 1.2
Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 22/88 (25%)
Query: 101 VSLTRIYDGKNVIVSHFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPP--TVKAIF 158
V+ +Y HF+ ++DLI A L A + A ++ V+A+
Sbjct: 67 VTRATLY-------RHFSGKDDLILAYLDQADRGIRAQV---TAARGSSPAADGQVRAVA 116
Query: 159 QLFHMN----------FANTSVELSSQN 176
+ F N E
Sbjct: 117 RSIVDGIRSPGFRGCAFLNAVAEYPDPA 144
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1,
transcriptional regulator of TETR family, bacterial
regulatory proteins; 1.50A {Rhodospirillum rubrum atcc
11170}
Length = 208
Score = 28.1 bits (63), Expect = 1.3
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 115 SHFNSREDLIQALLASAFVPFFSGFIPKEEALVANL 150
+ R DLI L+ S P F GF + A L
Sbjct: 56 RFASGRADLIGLLVESWIAPIFPGFEADPQDAAAAL 91
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like
protein, MCSG, PSI, structural genomics, protein S
initiative; 2.45A {Acinetobacter SP}
Length = 212
Score = 27.7 bits (62), Expect = 1.7
Identities = 7/75 (9%), Positives = 18/75 (24%), Gaps = 17/75 (22%)
Query: 116 HFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPT--VKAIFQLFHMN--------- 164
+F S+E LL + + + Q + +
Sbjct: 54 YFESKEAFGCELLKHYISDYQIRL---NQLWTTETSARDKLMNYLQCWVKDPATEQSWAE 110
Query: 165 ---FANTSVELSSQN 176
+ E++ +
Sbjct: 111 SCLIVKMAAEVADLS 125
>3on2_A Probable transcriptional regulator; protein structure initiative,
PSI-2, structural genomics, MI center for structural
genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Length = 199
Score = 27.9 bits (62), Expect = 1.8
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 17/86 (19%)
Query: 98 KLHVSLTRIYDGKNVIVSHFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAI 157
+ VS HF R+ L+ AL S F+ + E A+
Sbjct: 41 EAGVSHAAPS-------KHFRDRQALLDALAESGFLRLTAAL---ERAVEEAESHARARF 90
Query: 158 FQLFH--MNFANTSVELSSQNFFRIM 181
L ++FA L+ + +M
Sbjct: 91 AALAGAYVSFA-----LAHRELLALM 111
>4epp_A Poly(ADP-ribose) glycohydrolase; marco domain, PAR; HET: APR; 1.95A
{Tetrahymena thermophila} PDB: 4epq_A*
Length = 477
Score = 27.9 bits (61), Expect = 2.1
Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 3/101 (2%)
Query: 52 HVSLTRIYDGKNVIVSHFNSREDLIQYLLLCLEKALPLDAHLKVNGKLHVSLTRIYDGKN 111
+I D + + + + + L L + L L + D KN
Sbjct: 26 KQENKKIQDYQFPLPQKNSELWIIQKKTLQDLSSGKQKLDSFQ---SLESILEILRDSKN 82
Query: 112 VIVSHFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPP 152
+ + + + + L F FIPK LV +
Sbjct: 83 QNDEKYFNLKAVFEQLDKEEQTYFLEQFIPKICQLVLKIKK 123
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics,
PSI-2, P structure initiative; 2.50A {Streptomyces
coelicolor} SCOP: a.4.1.9 a.121.1.1
Length = 216
Score = 27.2 bits (60), Expect = 2.6
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 7/32 (21%)
Query: 101 VSLTRIYDGKNVIVSHFNSREDLIQALLASAF 132
+S +Y +F+ R++LI L+ A+
Sbjct: 48 MSGPALY-------RYFDGRDELITELIRDAY 72
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical
bundle, structural genomics, J center for structural
genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus
aurantiacus}
Length = 199
Score = 27.3 bits (61), Expect = 2.7
Identities = 16/75 (21%), Positives = 21/75 (28%), Gaps = 18/75 (24%)
Query: 116 HFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAIFQLFHMN----------- 164
HF S+E L A A F +A TV I +
Sbjct: 47 HFESKEQLALAAFDYAAEKVRERF----AVGLAGHKHTVDTIIAFLDVFRSYAERPPLVG 102
Query: 165 ---FANTSVELSSQN 176
NT++E N
Sbjct: 103 GCPILNTAIESDDTN 117
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation,
TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A*
2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Length = 210
Score = 27.0 bits (60), Expect = 3.0
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 116 HFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAIFQLFHMNFANTSVELSSQ 175
HFN++ +L+QALL S + + + + +L F ++ ++
Sbjct: 51 HFNNKAELVQALLDSLAETHDHLA---RASESEDEVDPLGCMRKLLLQVFNELVLDARTR 107
Query: 176 NFFRIMR 182
I+
Sbjct: 108 RINEILH 114
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus
subtilis subsp}
Length = 197
Score = 26.9 bits (60), Expect = 3.5
Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 10/70 (14%)
Query: 116 HFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAIFQLFHMNFANTSVELSSQ 175
+F+S+ LI A+ + + + + L F T +
Sbjct: 50 YFSSKNALIPAIAENLLTHTLDQI----KGRLHGDEDFWTVLDILIDETFLIT------E 99
Query: 176 NFFRIMRILF 185
I+ + +
Sbjct: 100 RHKDIIVLCY 109
>2pz9_A Putative regulatory protein; structural genomics, transcriptional
regulator, PSI, protein structure initiative; 2.80A
{Streptomyces coelicolor A3}
Length = 226
Score = 26.8 bits (59), Expect = 3.7
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 110 KNVIVSHFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAIFQLF 161
K + ++F S+E L + + A+LP +F F
Sbjct: 64 KERVYAYFRSKEALYAHVAERETTALIEA----TQLDPADLPGYAGILFDHF 111
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG,
protein structure initiative, midwest center for STRU
genomics; 1.99A {Cytophaga hutchinsonii}
Length = 204
Score = 26.9 bits (60), Expect = 3.8
Identities = 10/75 (13%), Positives = 20/75 (26%), Gaps = 18/75 (24%)
Query: 116 HFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAIFQLFHMN----------- 164
+F ++E + A + S A V + + M
Sbjct: 51 NFENKEAVAIAAFDYNWGHVKSVL----TAKVQACNTYKEMLLVYSSMYNDADGSLFPVG 106
Query: 165 ---FANTSVELSSQN 176
NT++E +
Sbjct: 107 GCPLLNTTIEADDTH 121
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional
regulator, structural genomics, center for structural
genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Length = 218
Score = 26.9 bits (59), Expect = 3.8
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 110 KNVIVSHFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAIFQLF 161
+I +F S+E L ++ +P + +A + A+ Q +
Sbjct: 51 PGLIRYYFGSKEKLFSTMIHETAMPVLAQL---HKARRETRQESPAALLQTY 99
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix,
DNA-binding, transcription regulation; 2.22A
{Streptomyces coelicolor}
Length = 231
Score = 26.9 bits (59), Expect = 3.8
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 116 HFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAIFQLFHMNFAN 167
+F +RE + + A + + + L A+ Q+F A
Sbjct: 63 YFETREQIFLKITAEGWKEWSAELC---ARLRELPGAAPDAVGQVFAATLAA 111
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding,
transcription regulation; HET: PRL; 1.90A {Mycobacterium
smegmatis} PDB: 2wgb_A
Length = 190
Score = 26.7 bits (59), Expect = 4.4
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 116 HFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPP 152
++ R DL++AL + E A + P
Sbjct: 52 YYPERTDLLRALARHVHDLSNAAI---ERADPTSGPV 85
>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H
family 5, michaelis complex, SKEW-BOAT, distortion;
0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB:
1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A*
6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A*
1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A
Length = 303
Score = 26.7 bits (59), Expect = 4.5
Identities = 5/22 (22%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 46 KVNGKLHVSLTRIYD--GKNVI 65
+ +G+L +S + + G+ V
Sbjct: 7 EEHGQLSISNGELVNERGEQVQ 28
Score = 26.7 bits (59), Expect = 4.5
Identities = 5/22 (22%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 94 KVNGKLHVSLTRIYD--GKNVI 113
+ +G+L +S + + G+ V
Sbjct: 7 EEHGQLSISNGELVNERGEQVQ 28
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding,
transcription regulation; 2.10A {Streptomyces
avermitilis ma-4680}
Length = 190
Score = 26.7 bits (59), Expect = 4.7
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 22/88 (25%)
Query: 101 VSLTRIYDGKNVIVSHFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPP--TVKAIF 158
VS +Y F S+++L+ A L F + P + +F
Sbjct: 40 VSKRSMY-------QLFESKDELLAASLKERSAAFVAKA---LPPADDGRSPRERILYVF 89
Query: 159 QLFHMN----------FANTSVELSSQN 176
+ + +EL Q
Sbjct: 90 ERVESQAGAPDFQGCRYLAVQIELKDQA 117
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural
genom protein structure initiative; 1.80A {Pseudomonas
aeruginosa} SCOP: a.4.1.9 a.121.1.1
Length = 235
Score = 26.6 bits (58), Expect = 4.9
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 116 HFNSREDLIQALLASAFVPFFSGFIP---KEEALVANLPPTVKAIFQLF 161
HF S++ LIQA+ + PF + + +A T++ + L
Sbjct: 47 HFGSKKALIQAVFSRFLGPFCASLEKELDRRQAKPEAQHATLEDLLHLL 95
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI,
protein structure initiative, midwest center for struc
genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP:
a.4.1.9 a.121.1.1
Length = 180
Score = 26.5 bits (59), Expect = 4.9
Identities = 10/71 (14%), Positives = 18/71 (25%), Gaps = 10/71 (14%)
Query: 116 HFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAIFQLFHMN----------F 165
HF S++ L+ + L + A F L +
Sbjct: 47 HFQSKDALMLEAFEQLLGKRRELLGELDPGLSGKERRALAAAFYLSRKHRDAQVDAGCPL 106
Query: 166 ANTSVELSSQN 176
T E++
Sbjct: 107 PATLAEVARLP 117
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD,
structural genomics, PSI-2, protein structure
initiative; 1.86A {Streptomyces coelicolor A3}
Length = 199
Score = 26.2 bits (58), Expect = 5.5
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 116 HFNSREDLIQALLASAF 132
HF SR L+QA+
Sbjct: 55 HFPSRWGLLQAVFQERV 71
>3col_A Putative transcription regulator; structural genomics, PSI-2,
protein structure initiative, midwest CENT structural
genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum
WCFS1}
Length = 196
Score = 26.2 bits (58), Expect = 5.6
Identities = 12/89 (13%), Positives = 28/89 (31%), Gaps = 19/89 (21%)
Query: 116 HFNSREDLIQALLASAFVPFFSGFI----------PKE--EALVANL-------PPTVKA 156
+F +++ LI ++ A S V + P ++
Sbjct: 50 YFKNKQALIDSVYARETNRILSTTDLDRLSDSTIDVTTRIRLYVQQVYDYSLANPDSLTI 109
Query: 157 IFQLFHMNFANTSVELSSQNFFRIMRILF 185
I Q+ +N ++ + + I+ L
Sbjct: 110 IQQIKALNGQGMTISAADADPNNIVANLL 138
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for
structura genomics, protein structure initiative,
unknown function; 2.80A {Listeria innocua}
Length = 185
Score = 26.1 bits (57), Expect = 5.7
Identities = 7/71 (9%), Positives = 20/71 (28%), Gaps = 4/71 (5%)
Query: 115 SHFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAIFQLFHMNFANTSVELSS 174
H +I+ + F + + ++ + I + N V S
Sbjct: 59 RHHKEIIQVIEVQILR----TMQYFSLEFDQIILTKENIQRLILRTIQKNPLLFQVIFWS 114
Query: 175 QNFFRIMRILF 185
+ + ++
Sbjct: 115 RAENIFIDVVS 125
>3c2b_A Transcriptional regulator, TETR family; structural genomics,
APC5923, PSI-2, PR structure initiative; 2.10A
{Agrobacterium tumefaciens str}
Length = 221
Score = 26.2 bits (58), Expect = 5.8
Identities = 7/71 (9%), Positives = 18/71 (25%), Gaps = 7/71 (9%)
Query: 115 SHFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAIFQLFHMNFANTSVELSS 174
F R+ L+ A++ + + L ++ L+
Sbjct: 54 KWFGDRDGLLAAMITFQQSKVRTFEKAGDRVSAPQLADHLEVFAHDLLD-------VLAG 106
Query: 175 QNFFRIMRILF 185
+ R+
Sbjct: 107 DVSLALNRLAI 117
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation,
RNA-binding, EIF4G-binding translation; 1.90A {Homo
sapiens} PDB: 4f26_A 2k8g_A
Length = 115
Score = 25.7 bits (57), Expect = 6.0
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 15/61 (24%)
Query: 94 KVNGKLHVSLTRIYDGKNVIVSHFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPT 153
K+NG L + + V V F SR++ +A L + F + + + N P
Sbjct: 64 KMNGML-------LNDRKVFVGRFKSRKER-EAELGARAKEFTNVY-------IKNFGPG 108
Query: 154 V 154
Sbjct: 109 S 109
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 26.5 bits (59), Expect = 6.4
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 13/65 (20%)
Query: 103 LTRIYDGKNVIVSHFNSREDLIQALL------ASAFVPFFSGFI----PKEEALVANLPP 152
+ ++ VI ++ + + QAL A + P L+++LP
Sbjct: 23 FQQKFE---VIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLPS 79
Query: 153 TVKAI 157
++K
Sbjct: 80 SLKVF 84
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional
regulator, STRU genomics, PSI, protein structure
initiative; 2.15A {Bacillus cereus atcc 14579} SCOP:
a.4.1.9 a.121.1.1
Length = 183
Score = 26.2 bits (58), Expect = 6.7
Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 7/35 (20%)
Query: 98 KLHVSLTRIYDGKNVIVSHFNSREDLIQALLASAF 132
L V +Y +H +D+ + L
Sbjct: 37 TLGVRSPSLY-------NHVKGLQDVRKNLGIYGI 64
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene
regulation; HET: TLA; 2.30A {Streptomyces coelicolor}
SCOP: a.4.1.9 a.121.1.1
Length = 202
Score = 25.9 bits (57), Expect = 7.0
Identities = 4/39 (10%), Positives = 16/39 (41%)
Query: 110 KNVIVSHFNSREDLIQALLASAFVPFFSGFIPKEEALVA 148
K +I +++ ++ +L ++L + + +
Sbjct: 42 KQLIYAYYGNKGELFASVLEKKMLDLAISVPVDPDDIEG 80
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR
transcriptional regulator, struct genomics; HET: STE;
1.79A {Jannaschia SP}
Length = 198
Score = 25.9 bits (57), Expect = 7.1
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 113 IVSHFNSREDLIQALLASAF 132
I +HF L + F
Sbjct: 49 IYTHFQDLNALTLEVNGRTF 68
>3mvc_A Globin protein 6; oxygen sensor, heme-binding protein, C. elegans,
OXY transport, electron transport; HET: HEM; 1.40A
{Caenorhabditis elegans}
Length = 161
Score = 25.8 bits (56), Expect = 7.1
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 60 DGKNVIVSHFNSREDLIQYLLLCLEKALPLDAHLKVNGKLHVSLTRIYDGKNVIVSHFNS 119
+G + H L+ L+ L+ A L+ G+ HV TR G +
Sbjct: 52 EGHERLKKHAQLFTVLMDDLIANLDSPSATVAGLREAGEKHVWPTRNQYGCPFHAHLLDQ 111
Query: 120 -REDLIQALLASAFVPFFS 137
+I+ L +
Sbjct: 112 FATAMIERTLEWGEKKDRT 130
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural
genomics, joint center for structural genomics; HET:
MSE; 2.35A {Haemophilus influenzae}
Length = 188
Score = 25.8 bits (57), Expect = 7.4
Identities = 8/69 (11%), Positives = 19/69 (27%), Gaps = 7/69 (10%)
Query: 116 HFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAIFQLFHMNFANTSVELSSQ 175
+F ++++L++ F F L + T Q M +
Sbjct: 48 YFKNKDELLEQFAHRVFSMFM-------ATLEKDFDETKPFFEQYRQMWKNIWYFLQENP 100
Query: 176 NFFRIMRIL 184
++
Sbjct: 101 TILSNLKQY 109
>2q24_A Putative TETR family transcriptional regulator; structural
genomics, PSI, protein structure initiative; 1.80A
{Streptomyces coelicolor A3}
Length = 194
Score = 25.8 bits (57), Expect = 9.1
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 116 HFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPP 152
+F +RE LI+A + + L+A LPP
Sbjct: 54 NFPTREALIEAAYRNE----VARLCDSVPGLLAELPP 86
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein
structure initiat midwest center for structural
genomics, MCSG; HET: MSE; 1.40A {Agrobacterium
tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Length = 194
Score = 25.7 bits (57), Expect = 9.2
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 15/73 (20%)
Query: 116 HFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPT--VKAIFQLFHMN--------- 164
HF S+ DL+ L++ +G E P ++A +
Sbjct: 48 HFPSKSDLVCKLVSQYRQEAEAGI---AELEKNISDPLEQLRAYIGYWEGCIADATHPFC 104
Query: 165 -FANTSVELSSQN 176
A + E+
Sbjct: 105 VCALLASEIPVLP 117
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2,
protein structure initiative; 2.30A {Mycobacterium
vanbaalenii pyr-1}
Length = 196
Score = 25.8 bits (57), Expect = 9.3
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 116 HFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPP 152
HF +++ L+ A+ L+A P
Sbjct: 52 HFPTKQALVVAVAEDRVRRIVDHA----RTLLAAEGP 84
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR;
helix-turn-helix, TETR family, repressor; 1.33A
{Staphylococcus epidermidis} PDB: 2zcn_A
Length = 192
Score = 25.6 bits (56), Expect = 9.9
Identities = 6/74 (8%), Positives = 24/74 (32%), Gaps = 11/74 (14%)
Query: 116 HFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPPTVKAIFQLFHMNFANTSVELSSQ 175
H++++E++ + + + F F + + ++ ++Q
Sbjct: 47 HYDNKEEIYRKSVENCFNYFIDFMMRNHDD-----NYSIDGLYQFLFKFI------FDVD 95
Query: 176 NFFRIMRILFPPDP 189
+ + + P
Sbjct: 96 ERYIKLYVQLSSAP 109
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B
AARS, ATP-dependen charging, protein synthesis,
structural genomics; HET: GLU; 2.05A {Burkholderia
thailandensis}
Length = 490
Score = 26.0 bits (58), Expect = 10.0
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 128 LASAFVPFFSGFIPKEEALVANLPPTVKAIFQLFHMNFANTSVELSSQNFFRIMR 182
+A F+ P +AL ++ V+ F VE + + ++
Sbjct: 387 IAENSAMFYRAPAPGADALAQHVTDAVRPALVEFAAALKT--VEWTKEAIAAALK 439
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.407
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,952,009
Number of extensions: 174299
Number of successful extensions: 660
Number of sequences better than 10.0: 1
Number of HSP's gapped: 653
Number of HSP's successfully gapped: 97
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.8 bits)