RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15139
(189 letters)
>d7a3ha_ c.1.8.3 (A:) Endoglucanase Cel5a {Bacillus agaradhaerens
[TaxId: 76935]}
Length = 300
Score = 28.7 bits (63), Expect = 0.38
Identities = 5/28 (17%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 45 LKVNGKLHVSLTRIYD--GKNVIVSHFN 70
++ +G+L +S + + G+ V + +
Sbjct: 3 VEEHGQLSISNGELVNERGEQVQLKGMS 30
Score = 28.7 bits (63), Expect = 0.38
Identities = 5/28 (17%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 93 LKVNGKLHVSLTRIYD--GKNVIVSHFN 118
++ +G+L +S + + G+ V + +
Sbjct: 3 VEEHGQLSISNGELVNERGEQVQLKGMS 30
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 76
Score = 25.6 bits (56), Expect = 1.6
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 8/37 (21%)
Query: 116 HFNSREDLIQALLASAFVPFFSGFIPKEEALVANLPP 152
HF S++ L+ L+ L P
Sbjct: 47 HFQSKDALMLEAFEQLLGKR--------RELLGELDP 75
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator
RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Length = 77
Score = 25.5 bits (56), Expect = 1.7
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 14/72 (19%)
Query: 65 IVSHFNSREDLIQYLLLCLEKALPLDAHLKVNGKLHVSLTRIYD----GKNVIVSHFNSR 120
IV H R L + L L + G V+ + + V+ +F SR
Sbjct: 1 IVDHDERRRAL-------ADAVLAL---IAREGISAVTTRAVAEESGWSTGVLNHYFGSR 50
Query: 121 EDLIQALLASAF 132
+L+ A L A
Sbjct: 51 HELLLAALRRAG 62
>d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030
{Thermotoga maritima [TaxId: 2336]}
Length = 75
Score = 25.1 bits (55), Expect = 1.8
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 109 GKNVIVSHFNSREDLIQALLASAFVPFFSGFIPKEEALVAN 149
K +I +F ++E+L S F E L+ N
Sbjct: 36 AKGLIFHYFKNKEELYYQAYMSVTEKLQKEF---ENFLMKN 73
>d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940
{Streptomyces coelicolor [TaxId: 1902]}
Length = 75
Score = 25.1 bits (55), Expect = 2.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 110 KNVIVSHFNSREDLIQALLASAF 132
K+ + HF ++E L + L AF
Sbjct: 39 KSGVHKHFGTKETLQISTLDKAF 61
>d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS
{Lactococcus lactis [TaxId: 1358]}
Length = 71
Score = 24.8 bits (54), Expect = 2.4
Identities = 4/36 (11%), Positives = 14/36 (38%)
Query: 105 RIYDGKNVIVSHFNSREDLIQALLASAFVPFFSGFI 140
+ ++F ++E+L+ + + F +
Sbjct: 35 TAKIRRQTFYNYFQNQEELLSWIFENDFAELINDNS 70
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator
YsiA {Bacillus subtilis [TaxId: 1423]}
Length = 72
Score = 24.7 bits (54), Expect = 2.4
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 110 KNVIVSHFNSREDLIQALLASAFVPFFSGFIPKEEAL 146
I +F ++ED++ +L F EE +
Sbjct: 35 DGTIYLYFKNKEDILISLFKEKMGQFIERM---EEDI 68
>d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator
SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Length = 68
Score = 24.7 bits (54), Expect = 2.5
Identities = 3/23 (13%), Positives = 9/23 (39%)
Query: 110 KNVIVSHFNSREDLIQALLASAF 132
+ + + +L A+L +
Sbjct: 38 PASLYVYVANTAELHAAVLDALL 60
>d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator
SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Length = 68
Score = 24.6 bits (54), Expect = 2.8
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 109 GKNVIVSHFNSREDLIQALLASAF 132
GK + + + L LLA
Sbjct: 39 GKTTVYRRWGTPGGLAADLLADMA 62
>d2vkva1 a.4.1.9 (A:6-67) Tetracyclin repressor (Tet-repressor,
TetR) {Escherichia coli [TaxId: 562]}
Length = 62
Score = 24.3 bits (53), Expect = 2.9
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 7/35 (20%)
Query: 98 KLHVSLTRIYDGKNVIVSHFNSREDLIQALLASAF 132
KL V +Y H ++ L+ AL
Sbjct: 28 KLGVEQPTLY-------WHVKNKRALLDALAVEIL 55
>d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator PA1836
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 70
Score = 24.7 bits (54), Expect = 2.9
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 109 GKNVIVSHFNSREDLIQALLASAF 132
+ HF ++E + L +
Sbjct: 33 SIGSLYHHFGNKERIHGELYLAGI 56
>d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator
YfiR {Bacillus subtilis [TaxId: 1423]}
Length = 81
Score = 24.7 bits (54), Expect = 3.0
Identities = 3/24 (12%), Positives = 13/24 (54%)
Query: 109 GKNVIVSHFNSREDLIQALLASAF 132
+ + +F+S E++ + ++ +
Sbjct: 44 SRGGVYLYFSSTEEMFRRIIETGL 67
>d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313
{Streptomyces coelicolor [TaxId: 1902]}
Length = 79
Score = 24.5 bits (53), Expect = 3.0
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 116 HFNSREDLIQALLASAFVPFFSGFIPKEEALVA 148
+F+ R++LI L+ A+ A +
Sbjct: 49 YFDGRDELITELIRDAYRSQADSL---RAAAAS 78
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 78
Score = 24.4 bits (53), Expect = 3.3
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 109 GKNVIVSHFNSREDLIQALLASAF 132
G + +F R L A F
Sbjct: 40 GVATLYRNFPDRFTLDMACAQYLF 63
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus
cereus [TaxId: 1396]}
Length = 72
Score = 24.5 bits (53), Expect = 3.5
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 109 GKNVIVSHFNSREDLIQALLASAF 132
+ +H +D+ + L
Sbjct: 36 RSPSLYNHVKGLQDVRKNLGIYGI 59
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR
{Staphylococcus aureus [TaxId: 1280]}
Length = 71
Score = 24.3 bits (53), Expect = 3.6
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 109 GKNVIVSHFNSREDLIQALLASAFVPFFSGFIPKEEALVA 148
K + HF ++E+L +L + + K+E + A
Sbjct: 34 SKGNLYYHFKTKENLFLEILNIEESKWQEQW--KKEQIKA 71
>d2g3ba1 a.4.1.9 (A:2-73) Putative transcriptional regulator
{Rhodococcus sp. rha1 [TaxId: 101510]}
Length = 72
Score = 24.3 bits (53), Expect = 3.7
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 109 GKNVIVSHFNSREDLIQALLASAF 132
++ HF R L++A L
Sbjct: 35 SPGLLYYHFKDRIGLLEAALNYIN 58
>d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator
RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Length = 69
Score = 24.3 bits (53), Expect = 4.0
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 10/66 (15%)
Query: 89 LDAHLKV---NGKLHVSLTRIYD----GKNVIVSHFNSREDLIQALLASAFVPFFSGFIP 141
L +++ G S+T + + + F S+ DL + L
Sbjct: 6 LQTAMELFWRQGYEGTSITDLTKALGINPPSLYAAFGSKRDLFEKTLDRYMCERTLQL-- 63
Query: 142 KEEALV 147
EEA+V
Sbjct: 64 -EEAMV 68
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 73
Score = 24.0 bits (52), Expect = 4.2
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 110 KNVIVSHFNSREDLIQALLASAF 132
+ +F S+E ++ LL
Sbjct: 37 RPTFYFYFPSKEAVLLTLLDRVV 59
>d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces
coelicolor [TaxId: 1902]}
Length = 68
Score = 23.9 bits (52), Expect = 4.7
Identities = 4/28 (14%), Positives = 13/28 (46%)
Query: 105 RIYDGKNVIVSHFNSREDLIQALLASAF 132
K +I +++ ++ +L ++L
Sbjct: 31 EARANKQLIYAYYGNKGELFASVLEKKM 58
Score = 23.5 bits (51), Expect = 7.0
Identities = 7/38 (18%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 57 RIYDGKNVIVSHFNSREDL----IQYLLLCLEKALPLD 90
K +I +++ ++ +L ++ +L L ++P+D
Sbjct: 31 EARANKQLIYAYYGNKGELFASVLEKKMLDLAISVPVD 68
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179
{Rhodococcus sp. [TaxId: 1831]}
Length = 69
Score = 23.9 bits (52), Expect = 4.8
Identities = 3/23 (13%), Positives = 11/23 (47%)
Query: 110 KNVIVSHFNSREDLIQALLASAF 132
+ HF++++++ L +
Sbjct: 35 IGAVQHHFSTKDEMFAFALRTLV 57
>d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator
SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Length = 75
Score = 23.9 bits (52), Expect = 5.9
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 109 GKNVIVSHFNSREDLIQALLASAF 132
+F +E LIQ
Sbjct: 38 SVGNAYYYFAGKEHLIQGFYDRIA 61
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator
YcdC {Escherichia coli [TaxId: 562]}
Length = 72
Score = 23.5 bits (51), Expect = 6.4
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 110 KNVIVSHFNSREDLIQALLASAF 132
K ++ +F S+E L A+L
Sbjct: 38 KTNLLYYFPSKEALYIAVLRQIL 60
>d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus
cereus [TaxId: 1396]}
Length = 69
Score = 23.5 bits (51), Expect = 6.7
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 110 KNVIVSHFNSREDLIQALLASAF 132
K I + ++ ++ SA
Sbjct: 38 KATIYKWWPNKAAVVMDGFLSAA 60
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 74
Score = 23.5 bits (51), Expect = 7.4
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 110 KNVIVSHFNSREDLIQALLASAF 132
I HF S+ DL+ L++
Sbjct: 38 NASIHHHFPSKSDLVCKLVSQYR 60
>d2np3a1 a.4.1.9 (A:35-99) Putative transcriptional regulator
SCO0857 {Streptomyces coelicolor [TaxId: 1902]}
Length = 65
Score = 23.1 bits (50), Expect = 8.9
Identities = 3/20 (15%), Positives = 11/20 (55%)
Query: 109 GKNVIVSHFNSREDLIQALL 128
++++ + ++E+L L
Sbjct: 29 DQSLVHHFYGTKENLFLQAL 48
>d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR
{Bacillus cereus [TaxId: 1396]}
Length = 73
Score = 23.1 bits (50), Expect = 9.3
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 109 GKNVIVSHFNSREDLIQALL 128
+ +FN +E+L +
Sbjct: 37 NVAMASYYFNGKENLYYEVF 56
>d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB
{Streptomyces coelicolor [TaxId: 1902]}
Length = 71
Score = 23.1 bits (50), Expect = 10.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 109 GKNVIVSHFNSREDLIQALL 128
K + HF ++EDL A+L
Sbjct: 38 TKGALYFHFAAKEDLAHAIL 57
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.140 0.407
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 710,674
Number of extensions: 32255
Number of successful extensions: 154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 34
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.6 bits)