BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1514
(760 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZSQ|A Chain A, Crystal Structure Of Mtmr2 In Complex With
Phosphatidylinositol 3-Phosphate
pdb|1ZVR|A Chain A, Crystal Structure Of Mtmr2 In Complex With
Phosphatidylinositol 3,5-Bisphosphate
Length = 528
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/645 (50%), Positives = 411/645 (63%), Gaps = 133/645 (20%)
Query: 23 PLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSRVE 82
PLLPGE I+ A++VTY+CP++G RG L+VTNY+LYF+S++R+ P+V++ LGV++RVE
Sbjct: 8 PLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVE 67
Query: 83 KVGGQLSRGENSYGIELFCKDMRNLRFGHKQENHSRRNVFEKRFGHKQENHSRRNVFEKL 142
K+GG SRGENSYG+E CKD+RNLRF HK E +R R++FE L
Sbjct: 68 KIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTR-----------------RSIFENL 110
Query: 143 QQYAFPLSHKLPIFAFEYTETFPENGWNIHEPIAELKRMGVPNDMWKISRINENYEICDS 202
+YAFP+S+ LP+FAFEY E FPENGW +++P+ E +R G+PN+ W+I++INE YE+CD+
Sbjct: 111 MKYAFPVSNNLPLFAFEYKEVFPENGWKLYDPLLEYRRQGIPNESWRITKINERYELCDT 170
Query: 203 YPTILAIPTQVTDEEIRVIAQFRSRGRIPVLSWIHPESQATITRASQPLVGVGGKRCKED 262
YP +L +P + DEE++ +A FRSRGRIPVLSWIHPESQATITR SQP+VGV GKR KED
Sbjct: 171 YPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQATITRCSQPMVGVSGKRSKED 230
Query: 263 ERYIQMIMDANAQSHKLFIMDARPRSRGRIPVLSWIHPESQATITRASQPLVGVGGKRCK 322
E+Y+Q IMD+NAQSHK+FI DAR P A +A GG
Sbjct: 231 EKYLQAIMDSNAQSHKIFIFDAR--------------PSVNAVANKAK------GGGYES 270
Query: 323 EDERYIQMIMDANAQSHKLFIMDARPSXXXXXXXXXXXXYESEESYQNAELVFLDIHNIH 382
ED Q+ +L +D +IH
Sbjct: 271 EDA----------YQNAELVFLDIH-----------------------------NIH--- 288
Query: 383 VMRESQRKLKELCFPQIDEARWFSGVDSTYWLKHIKCILAGACRIVDKVENHKTSVLVHC 442
VMRES RKLKE+ +P I+E W S ++ST+WL+HIK ILAGA RI DKVE+ KTSV+VH
Sbjct: 289 VMRESLRKLKEIVYPNIEETHWLSNLESTHWLEHIKLILAGALRIADKVESGKTSVVVHS 348
Query: 443 SDGWDRTAQIDEARWFSGVDSTYWLKHIKCILAGACRIVDKVENHKTSVLVHCSDGWDRX 502
SDGWDRTAQ+ TS+ + DG
Sbjct: 349 SDGWDRTAQL------------------------------------TSLAMLMLDG---- 368
Query: 503 XXXXXXXXXXXDPYYRTIKGFEVLIEKEWLSFGHKFQQRIGHGDDKHSDADRSPVFLQLI 562
YYRTI+GFEVL+EKEWLSFGH+FQ R+GHGD H+DADRSPVFLQ I
Sbjct: 369 -------------YYRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFI 415
Query: 563 DAVWQVTTMFRHAFEFNEHFLITILDHLYSCRFGTFLFNSDRERNQENMKQRTVSLWSYI 622
D VWQ+T F AFEFNE+FLITILDHLYSC FGTFL NS+++R +EN+ +RTVSLWSYI
Sbjct: 416 DCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWSYI 475
Query: 623 NSSLDLYKNPLYFP-QLHVLEPIASMRHIKLWKGLYCRWNPSMRA 666
NS L+ + NPLY HVL P+ASMRH++LW G Y RWNP A
Sbjct: 476 NSQLEDFTNPLYGSYSNHVLYPVASMRHLELWVGYYIRWNPRAAA 520
>pdb|1LW3|A Chain A, Crystal Structure Of Myotubularin-Related Protein 2
Complexed With Phosphate
pdb|1M7R|A Chain A, Crystal Structure Of Myotubularin-Related Protein-2
(Mtmr2) Complexed With Phosphate
pdb|1M7R|B Chain B, Crystal Structure Of Myotubularin-Related Protein-2
(Mtmr2) Complexed With Phosphate
Length = 657
Score = 628 bits (1619), Expect = e-180, Method: Compositional matrix adjust.
Identities = 335/684 (48%), Positives = 417/684 (60%), Gaps = 147/684 (21%)
Query: 23 PLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSRVE 82
PLLPGE I+ A++VTY+CP++G RG L+VTNY+LYF+S++R+ P+V++ LGV++RVE
Sbjct: 80 PLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVE 139
Query: 83 KVGGQLSRGENSYGIELFCKDMRNLRFGHKQENHSRRNVFEKRFGHKQENHSRRNVFEKL 142
K+GG SRGENSYG+E CKD+RNLRF HK E +R R++FE L
Sbjct: 140 KIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTR-----------------RSIFENL 182
Query: 143 QQYAFPLSHKLPIFAFEYTETFPENGWNIHEPIAELKRMGVPNDMWKISRINENYEICDS 202
+YAFP+S+ LP+FAFEY E FPENG WK+
Sbjct: 183 MKYAFPVSNNLPLFAFEYKEVFPENG-------------------WKL------------ 211
Query: 203 YPTILAIPTQVTDEEIRVIAQFRSRGRIPVLSWIHPESQATITRASQPLVGVGGKRCKED 262
Y +L ++R +G IP SW + K +
Sbjct: 212 YDPLL---------------EYRRQG-IPNESW---------------------RITKIN 234
Query: 263 ERY-------IQMIMDANAQSHKLFIMDARPRSRGRIPVLSWIHPESQATITRASQPLVG 315
ERY +++ AN +L + A RSRGRIPVLSWIHPESQATITR SQP+VG
Sbjct: 235 ERYELCDTYPALLVVPANIPDEELKRV-ASFRSRGRIPVLSWIHPESQATITRCSQPMVG 293
Query: 316 VGGKRCKEDERYIQMIMDANAQSHKLFIMDARPSXXXXXXXXXXXXYESEESYQNAELVF 375
V GKR KEDE+Y+Q IMD+NAQSHK+FI DARPS YESE++YQNAELVF
Sbjct: 294 VSGKRSKEDEKYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVF 353
Query: 376 LDIHNIHVMRESQRKLKELCFPQIDEARWFSGVDSTYWLKHIKCILAGACRIVDKVENHK 435
LDIHNIHVMRES RKLKE+ +P
Sbjct: 354 LDIHNIHVMRESLRKLKEIVYPN------------------------------------- 376
Query: 436 TSVLVHCSDGWDRTAQIDEARWFSGVDSTYWLKHIKCILAGACRIVDKVENHKTSVLVHC 495
I+E W S ++ST+WL+HIK ILAGA RI DKVE+ KTSV+VH
Sbjct: 377 ----------------IEETHWLSNLESTHWLEHIKLILAGALRIADKVESGKTSVVVHS 420
Query: 496 SDGWDRXXXXXXXXXXXXDPYYRTIKGFEVLIEKEWLSFGHKFQQRIGHGDDKHSDADRS 555
SDGWDR D YYRTI+GFEVL+EKEWLSFGH+FQ R+GHGD H+DADRS
Sbjct: 421 SDGWDRTAQLTSLAMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHADADRS 480
Query: 556 PVFLQLIDAVWQVTTMFRHAFEFNEHFLITILDHLYSCRFGTFLFNSDRERNQENMKQRT 615
PVFLQ ID VWQ+T F AFEFNE+FLITILDHLYSC FGTFL NS+++R +EN+ +RT
Sbjct: 481 PVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKRT 540
Query: 616 VSLWSYINSSLDLYKNPLYFP-QLHVLEPIASMRHIKLWKGLYCRWNPSMRAQDPIYQRT 674
VSLWSYINS L+ + NPLY HVL P+ASMRH++LW G Y RWNP M+ Q+PI+ R
Sbjct: 541 VSLWSYINSQLEDFTNPLYGSYSNHVLYPVASMRHLELWVGYYIRWNPRMKPQEPIHNRY 600
Query: 675 RELLVLKEQLDKSSEECRKELKAR 698
+ELL + +L K EE ++E+ R
Sbjct: 601 KELLAKRAELQKKVEELQREISNR 624
>pdb|2YF0|A Chain A, Human Myotubularin Related Protein 6 (Mtmr6)
Length = 512
Score = 253 bits (647), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 145/388 (37%), Positives = 202/388 (52%), Gaps = 64/388 (16%)
Query: 276 SHKLFIMDARPRSRGRIPVLSWIHPESQATITRASQPLVGVGGKRCKEDERYIQMIMDAN 335
S + + ++ RS+GR PVLS+ H + +A I R SQPL G RC EDE +Q I AN
Sbjct: 170 SKPIIVGSSKFRSKGRFPVLSYYHQDKEAAICRCSQPLSGFSA-RCLEDEHLLQAISKAN 228
Query: 336 AQSHKLFIMDARPSXXXXXXXXXXXXYESEESYQNAELVFLDIHNIHVMRESQRKLKELC 395
+ +++MD RP YE+E++Y N F+ I NIHVMR S +KL E+
Sbjct: 229 PVNRYMYVMDTRPKLNAMANRAAGKGYENEDNYSNIRFQFVGIENIHVMRSSLQKLLEVN 288
Query: 396 FPQ-IDEARWFSGVDSTYWLKHIKCILAGACRIVDKVENHKTSVLVHCSDGWDRTAQIDE 454
+ + ++SG++S+ WL+HIK ++ A + + SVLVHCSDGWDRT+Q+
Sbjct: 289 GTKGLSVNDFYSGLESSGWLRHIKAVMDAAVFLAKAITVENASVLVHCSDGWDRTSQV-- 346
Query: 455 ARWFSGVDSTYWLKHIKCILAGACRIVDKVENHKTSVLVHCSDGWDRXXXXXXXXXXXXD 514
CS G D
Sbjct: 347 ----------------------------------------CSLG-----------SLLLD 355
Query: 515 PYYRTIKGFEVLIEKEWLSFGHKFQQRIGH--GDDKHSDADRSPVFLQLIDAVWQVTTMF 572
YYRTIKGF VLIEK+W+SFGHKF +R G GD K + SPVF Q ++ VW +T F
Sbjct: 356 SYYRTIKGFMVLIEKDWISFGHKFSERCGQLDGDPK----EVSPVFTQFLECVWHLTEQF 411
Query: 573 RHAFEFNEHFLITILDHLYSCRFGTFLFNSDRERNQENMKQRTVSLWSYINSSLDLYKNP 632
AFEF+E FL+ I +H++SC+FG FL N +ER + +K++T SLW ++ Y NP
Sbjct: 412 PQAFEFSEAFLLQIHEHIHSCQFGNFLGNCQKEREELKLKEKTYSLWPFLLEDQKKYLNP 471
Query: 633 LYFPQLH---VLEPIASMRHIKLWKGLY 657
LY + H VLEP + K W+ +Y
Sbjct: 472 LYSSESHRFTVLEPNTVSFNFKFWRNMY 499
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 81/137 (59%), Gaps = 5/137 (3%)
Query: 155 IFAFEYTETFPEN----GWNIHEPIAELKRMGVPNDMWKISRINENYEICDSYPTILAIP 210
++AF Y ++ GW + + E KRMGVPN W++S N +Y+IC++YP L +P
Sbjct: 107 LYAFSYNPKQNDSERLQGWQLIDLAEEYKRMGVPNSHWQLSDANRDYKICETYPRELYVP 166
Query: 211 TQVTDEEIRVIAQFRSRGRIPVLSWIHPESQATITRASQPLVGVGGKRCKEDERYIQMIM 270
+ I ++FRS+GR PVLS+ H + +A I R SQPL G RC EDE +Q I
Sbjct: 167 RIASKPIIVGSSKFRSKGRFPVLSYYHQDKEAAICRCSQPLSGFSA-RCLEDEHLLQAIS 225
Query: 271 DANAQSHKLFIMDARPR 287
AN + +++MD RP+
Sbjct: 226 KANPVNRYMYVMDTRPK 242
>pdb|3IML|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From
Burkholderia Pseudomallei
pdb|3IML|B Chain B, Crystal Structure Of S-Adenosylmethionine Synthetase From
Burkholderia Pseudomallei
pdb|3IML|C Chain C, Crystal Structure Of S-Adenosylmethionine Synthetase From
Burkholderia Pseudomallei
pdb|3IML|D Chain D, Crystal Structure Of S-Adenosylmethionine Synthetase From
Burkholderia Pseudomallei
Length = 399
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 200 CDSYPTILAIPTQVTDEEIRVIAQFRSRGRIPVLSWIHPESQATIT 245
CD P ++ +P ++ + A R GR+P W+ P++++ +T
Sbjct: 135 CDETPELMPLPIHLSHRLVERQANLRRDGRLP---WLRPDAKSQVT 177
>pdb|1ZIT|A Chain A, Structure Of The Receiver Domain Of Ntrc4 From Aquifex
Aeolicus
pdb|2JRL|A Chain A, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
pdb|2JRL|B Chain B, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
Length = 121
Score = 29.3 bits (64), Expect = 9.1, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 363 ESEESYQNAELVFLDIHNIH-----VMRESQRKLKELCFPQIDEARWFSGVDSTYWLKHI 417
+ EES ++ L+ H +RE+++K+KEL FP I W D ++ I
Sbjct: 8 DDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELFFPVIVLDVWMPDGDGVNFIDFI 67
Query: 418 K 418
K
Sbjct: 68 K 68
>pdb|1OU5|A Chain A, Crystal Structure Of Human Cca-Adding Enzyme
pdb|1OU5|B Chain B, Crystal Structure Of Human Cca-Adding Enzyme
Length = 448
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 212 QVTDEEIRVIAQFRSRGRIPVLSWIH-PESQATITRASQPLVGVGGKRCKEDERYIQMIM 270
++ ++ +R++ FR GRI H PE+ I ++ L G+ G+R + + I +
Sbjct: 204 RIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGN 263
Query: 271 DANAQSHKLFIMDARP 286
N H ++ +D P
Sbjct: 264 HVNHLIHLIYDLDVAP 279
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,591,647
Number of Sequences: 62578
Number of extensions: 933752
Number of successful extensions: 1849
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1829
Number of HSP's gapped (non-prelim): 16
length of query: 760
length of database: 14,973,337
effective HSP length: 106
effective length of query: 654
effective length of database: 8,340,069
effective search space: 5454405126
effective search space used: 5454405126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)