Query psy1514
Match_columns 760
No_of_seqs 282 out of 802
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 21:37:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4471|consensus 100.0 2E-167 4E-172 1364.4 41.7 561 18-712 30-601 (717)
2 KOG1089|consensus 100.0 2E-137 5E-142 1147.1 34.1 534 32-699 10-560 (573)
3 PF06602 Myotub-related: Myotu 100.0 3E-106 6E-111 881.5 27.2 343 154-608 1-352 (353)
4 KOG1090|consensus 100.0 5.4E-75 1.2E-79 655.9 19.5 553 8-658 773-1453(1732)
5 KOG1089|consensus 99.8 2.1E-21 4.5E-26 218.6 3.3 161 398-576 316-486 (573)
6 KOG4471|consensus 99.7 2.3E-18 5E-23 191.4 3.8 190 396-622 344-543 (717)
7 PF06602 Myotub-related: Myotu 99.6 3E-17 6.4E-22 180.6 -0.4 130 400-546 205-343 (353)
8 smart00568 GRAM domain in gluc 97.7 8.3E-05 1.8E-09 61.3 6.5 56 24-84 2-60 (61)
9 PF11605 Vps36_ESCRT-II: Vacuo 97.6 0.00025 5.5E-09 63.5 8.5 68 19-86 5-75 (89)
10 PF02893 GRAM: GRAM domain; I 97.6 0.00023 5E-09 60.2 7.7 58 22-84 7-68 (69)
11 PF12578 3-PAP: Myotubularin-a 96.8 0.00081 1.7E-08 65.4 2.5 64 626-689 59-129 (142)
12 smart00404 PTPc_motif Protein 96.7 0.006 1.3E-07 54.2 7.8 59 488-583 39-97 (105)
13 smart00012 PTPc_DSPc Protein t 96.7 0.006 1.3E-07 54.2 7.8 59 488-583 39-97 (105)
14 KOG3294|consensus 96.7 0.0024 5.2E-08 66.0 5.1 63 21-83 13-84 (261)
15 PF07289 DUF1448: Protein of u 96.5 0.011 2.4E-07 64.7 9.0 65 19-85 146-210 (339)
16 KOG1090|consensus 96.1 0.006 1.3E-07 73.2 4.8 115 385-530 1242-1358(1732)
17 PF14470 bPH_3: Bacterial PH d 96.0 0.098 2.1E-06 46.5 11.2 79 24-110 1-80 (96)
18 smart00683 DM16 Repeats in sea 95.9 0.048 1E-06 44.6 7.9 53 28-82 1-53 (55)
19 PF08000 bPH_1: Bacterial PH d 95.3 0.21 4.6E-06 47.6 11.4 96 20-145 23-122 (124)
20 KOG2774|consensus 94.3 0.024 5.3E-07 59.0 2.1 31 710-741 43-73 (366)
21 PF07289 DUF1448: Protein of u 94.1 0.25 5.5E-06 54.3 9.6 89 20-112 15-104 (339)
22 PF13350 Y_phosphatase3: Tyros 93.7 0.074 1.6E-06 52.5 4.2 26 489-514 125-150 (164)
23 PF03162 Y_phosphatase2: Tyros 93.2 0.086 1.9E-06 52.6 3.7 46 484-537 87-133 (164)
24 PF14844 PH_BEACH: PH domain a 92.4 0.25 5.5E-06 45.2 5.5 70 39-113 10-94 (106)
25 cd00127 DSPc Dual specificity 91.9 0.27 5.9E-06 46.3 5.3 34 474-507 67-100 (139)
26 smart00195 DSPc Dual specifici 91.6 0.31 6.6E-06 46.3 5.3 36 473-508 63-98 (138)
27 PF00782 DSPc: Dual specificit 88.7 0.52 1.1E-05 44.3 4.1 35 474-508 59-93 (133)
28 COG2365 Protein tyrosine/serin 88.7 0.75 1.6E-05 48.9 5.8 42 488-536 136-177 (249)
29 cd01201 Neurobeachin Neurobeac 85.6 0.84 1.8E-05 42.5 3.4 66 45-114 16-95 (108)
30 cd00047 PTPc Protein tyrosine 83.1 1.9 4.2E-05 44.6 5.3 24 487-510 165-188 (231)
31 smart00194 PTPc Protein tyrosi 82.2 2 4.4E-05 45.3 5.1 64 488-590 193-256 (258)
32 PF00102 Y_phosphatase: Protei 80.6 2.1 4.6E-05 43.6 4.6 27 485-511 167-193 (235)
33 PTZ00393 protein tyrosine phos 79.5 2.7 5.9E-05 44.5 4.9 24 486-509 168-191 (241)
34 PTZ00242 protein tyrosine phos 79.4 3.4 7.4E-05 41.2 5.4 23 487-509 97-119 (166)
35 PHA02740 protein tyrosine phos 79.0 3.3 7.1E-05 45.3 5.5 22 488-509 221-242 (298)
36 PHA02746 protein tyrosine phos 78.1 3.6 7.8E-05 45.5 5.6 62 489-589 248-309 (323)
37 PHA02742 protein tyrosine phos 75.5 2 4.3E-05 47.0 2.6 22 489-510 230-251 (303)
38 PHA02738 hypothetical protein; 74.7 4.8 0.0001 44.4 5.4 23 489-511 228-250 (320)
39 KOG2059|consensus 73.5 4.6 9.9E-05 48.3 5.0 96 50-170 590-685 (800)
40 KOG0793|consensus 73.1 3 6.6E-05 49.6 3.4 45 468-512 907-951 (1004)
41 PHA02747 protein tyrosine phos 72.7 2.6 5.6E-05 46.3 2.7 23 489-511 230-252 (312)
42 COG5599 PTP2 Protein tyrosine 72.6 3.3 7.2E-05 44.3 3.3 30 487-516 217-246 (302)
43 KOG2433|consensus 70.3 4.4 9.6E-05 45.4 3.7 60 473-535 487-555 (577)
44 cd00127 DSPc Dual specificity 67.2 5.9 0.00013 37.1 3.6 23 431-453 77-99 (139)
45 PF05706 CDKN3: Cyclin-depende 65.3 11 0.00023 38.0 4.9 37 478-515 124-160 (168)
46 TIGR01244 conserved hypothetic 64.8 7.6 0.00017 37.3 3.8 28 486-514 84-111 (135)
47 cd01244 PH_RasGAP_CG9209 RAS_G 64.7 32 0.00069 31.5 7.6 62 50-115 25-86 (98)
48 smart00195 DSPc Dual specifici 64.1 7.3 0.00016 36.8 3.5 28 427-454 70-97 (138)
49 COG2453 CDC14 Predicted protei 63.3 10 0.00022 38.2 4.6 36 471-507 89-124 (180)
50 PF08567 TFIIH_BTF_p62_N: TFII 58.2 42 0.0009 29.5 6.9 55 46-104 11-67 (79)
51 PF00782 DSPc: Dual specificit 54.5 9.6 0.00021 35.6 2.5 29 426-454 64-92 (133)
52 smart00404 PTPc_motif Protein 54.5 6.8 0.00015 34.4 1.4 19 435-453 39-57 (105)
53 smart00012 PTPc_DSPc Protein t 54.5 6.8 0.00015 34.4 1.4 19 435-453 39-57 (105)
54 PRK12361 hypothetical protein; 53.8 14 0.00029 43.8 4.1 34 475-508 162-195 (547)
55 PF07910 Peptidase_C78: Peptid 53.1 2.1 4.6E-05 44.7 -2.4 127 377-535 53-199 (218)
56 PF13350 Y_phosphatase3: Tyros 48.5 11 0.00023 37.2 1.8 30 425-454 114-143 (164)
57 PF04273 DUF442: Putative phos 45.6 21 0.00046 33.3 3.2 31 480-511 78-108 (110)
58 PRK15375 pathogenicity island 44.9 20 0.00042 42.1 3.4 33 491-524 469-505 (535)
59 KOG2836|consensus 43.8 62 0.0013 31.6 6.0 33 485-517 94-126 (173)
60 KOG0792|consensus 42.8 21 0.00046 44.8 3.5 35 470-505 1045-1080(1144)
61 KOG0789|consensus 42.2 53 0.0011 36.9 6.4 23 487-509 298-320 (415)
62 KOG0791|consensus 37.9 40 0.00086 37.9 4.3 45 472-521 271-315 (374)
63 KOG1716|consensus 37.0 53 0.0011 35.6 5.1 37 470-506 137-173 (285)
64 PF03517 Voldacs: Regulator of 35.6 41 0.00088 32.5 3.6 28 49-78 1-29 (135)
65 PF08512 Rtt106: Histone chape 34.9 2.1E+02 0.0046 25.8 7.9 60 45-110 9-71 (95)
66 PF14566 PTPlike_phytase: Inos 34.1 42 0.00092 32.8 3.5 40 472-512 109-148 (149)
67 PF14593 PH_3: PH domain; PDB: 32.4 4.1E+02 0.009 24.7 11.4 77 23-111 6-83 (104)
68 PF04683 Proteasom_Rpn13: Prot 31.5 2E+02 0.0044 25.6 7.1 54 46-114 14-74 (85)
69 KOG1717|consensus 30.9 68 0.0015 34.7 4.5 42 465-506 228-269 (343)
70 smart00194 PTPc Protein tyrosi 30.0 96 0.0021 32.6 5.6 20 435-454 193-212 (258)
71 PF06667 PspB: Phage shock pro 29.6 90 0.002 27.4 4.3 49 651-699 21-69 (75)
72 COG5350 Predicted protein tyro 29.5 55 0.0012 32.6 3.3 46 468-518 78-123 (172)
73 TIGR02976 phageshock_pspB phag 29.2 92 0.002 27.3 4.3 50 651-700 21-70 (75)
74 KOG2760|consensus 28.8 66 0.0014 36.5 4.2 59 26-84 41-104 (432)
75 PRK09458 pspB phage shock prot 28.6 1.3E+02 0.0027 26.6 5.0 48 652-699 22-69 (75)
76 cd00047 PTPc Protein tyrosine 28.1 85 0.0018 32.3 4.8 21 434-454 165-185 (231)
77 PTZ00242 protein tyrosine phos 27.4 69 0.0015 32.0 3.7 22 433-454 96-117 (166)
78 PHA02740 protein tyrosine phos 26.9 32 0.00069 37.7 1.4 20 435-454 221-240 (298)
79 PF03162 Y_phosphatase2: Tyros 25.8 41 0.0009 33.5 1.8 19 434-452 90-108 (164)
80 PF09340 NuA4: Histone acetylt 25.3 41 0.00089 29.7 1.5 72 672-745 2-73 (80)
81 PHA02742 protein tyrosine phos 24.3 40 0.00086 36.9 1.5 19 435-453 229-247 (303)
82 KOG1720|consensus 24.2 1E+02 0.0022 32.3 4.3 34 473-507 133-166 (225)
83 PF00102 Y_phosphatase: Protei 23.4 63 0.0014 32.8 2.7 21 432-452 167-187 (235)
84 PF15581 Imm35: Immunity prote 23.3 56 0.0012 29.4 1.9 27 508-534 20-46 (93)
85 PHA02746 protein tyrosine phos 23.2 90 0.002 34.5 4.1 19 436-454 248-266 (323)
86 PHA02747 protein tyrosine phos 23.1 41 0.0009 37.0 1.4 19 436-454 230-248 (312)
87 cd00900 PH-like Pleckstrin hom 23.1 4.2E+02 0.0092 21.7 9.5 66 45-114 18-86 (99)
88 KOG4347|consensus 22.4 58 0.0012 39.1 2.4 60 23-85 16-76 (671)
89 KOG3238|consensus 21.9 89 0.0019 32.3 3.3 33 47-79 34-69 (216)
90 KOG1572|consensus 21.8 71 0.0015 34.0 2.7 46 483-536 143-189 (249)
91 PLN02727 NAD kinase 21.5 88 0.0019 39.4 3.7 34 476-509 328-362 (986)
92 PTZ00393 protein tyrosine phos 20.7 1.3E+02 0.0027 32.2 4.3 22 433-454 168-189 (241)
93 KOG0790|consensus 20.4 67 0.0015 37.0 2.3 18 489-506 452-469 (600)
94 PF04283 CheF-arch: Chemotaxis 20.2 1.3E+02 0.0028 31.7 4.3 38 43-84 22-59 (221)
95 KOG1718|consensus 20.2 1.2E+02 0.0025 31.0 3.6 31 480-511 86-116 (198)
No 1
>KOG4471|consensus
Probab=100.00 E-value=2e-167 Score=1364.40 Aligned_cols=561 Identities=58% Similarity=1.027 Sum_probs=532.4
Q ss_pred CCCCCCCCCCceEEEEeccEEEeCCCCCCeeEEEEEeceEEEEEecCCCCceEEEecccceeEEEEecCccCCCCCcccE
Q psy1514 18 RPDDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSRVEKVGGQLSRGENSYGI 97 (760)
Q Consensus 18 ~~~~~~lLPGE~i~~~a~~V~~~~p~~~~i~GtL~lTnyrLiF~~~~~~~~~~~~IPL~~I~~Vek~~~~~s~g~~~~~L 97 (760)
...++++||||.++..+ |.|||.|++.|+|.||||||.|++.+.+.+++++|||+.|++|||++++++ |+++++|
T Consensus 30 ~~~~~~~L~GE~i~~~~----y~c~f~G~~~g~l~lsNyRl~fks~~t~~~~~~~VPLg~Ie~vek~~~~~~-g~ns~~L 104 (717)
T KOG4471|consen 30 LQVPFPLLPGESIIDEK----YICPFLGAVDGTLALSNYRLYFKSKETDPPFVLDVPLGVIERVEKRGGATS-GENSFGL 104 (717)
T ss_pred ccCcccccCCcccccce----ecccccccccceEEeeeeEEEEEeccCCCceeEeechhhhhhhhhcCcccc-CCcceeE
Confidence 46889999999998765 889999999999999999999999988888999999999999999998776 8999999
Q ss_pred EEEecCccEEEEeeccCCccccchhhhhccccccccchHHHHHHHHHhhcCCCCCCcccccccCCCCCCCC------ccc
Q psy1514 98 ELFCKDMRNLRFGHKQENHSRRNVFEKRFGHKQENHSRRNVFEKLQQYAFPLSHKLPIFAFEYTETFPENG------WNI 171 (760)
Q Consensus 98 ~I~CKDfR~l~f~f~~e~~~~~~vf~~~~~~~q~~~~~~~v~~~L~~la~p~s~~~~lFAF~y~~~~~~~g------W~~ 171 (760)
+|.|||+|+++|+|+++++| ++++++.|.+++||.+...+||||.|...+..+| |.+
T Consensus 105 ~i~CKDmr~lR~~fk~~~q~-----------------r~~~~e~L~~~~~p~~~~~~LFaF~~~~~~~~ng~e~~~~~~l 167 (717)
T KOG4471|consen 105 EITCKDMRNLRCAFKQEEQC-----------------RRDWFERLNRAAFPPAKSEDLFAFAYHAWFPVNGSENGQHWKL 167 (717)
T ss_pred EEEeccccceeeecCccccc-----------------HHHHHHHHHHhcCCcccchhhhhcccHhhcCCCCccccccccc
Confidence 99999999999999999887 6799999999999998888999999998887777 999
Q ss_pred cCh--HHHHHhcCCCCCCeeEEeecCCccccCCCCcceEecCccCHHHHHHHHHHhhcCCCceEeeeccCCceEEEeccC
Q psy1514 172 HEP--IAELKRMGVPNDMWKISRINENYEICDSYPTILAIPTQVTDEEIRVIAQFRSRGRIPVLSWIHPESQATITRASQ 249 (760)
Q Consensus 172 yd~--~~E~~R~G~~~~~WRis~vN~~y~lC~TYP~~lvVP~sisD~~L~~~A~FRs~gR~PvlsW~h~~~~avL~RssQ 249 (760)
|+| ..||+|||++++.||||.+|++|++|+|||..++||++|+|++|.++|.||+++|+|||+|+||.+||+|+||||
T Consensus 168 ~~P~~~~E~~r~g~~n~~WRIs~iNs~Y~LC~SYP~~l~VP~~isD~eL~~VasFRsr~RlPvlsw~Hp~sgAvIaRcSQ 247 (717)
T KOG4471|consen 168 YDPMFKNEYRRQGLPNESWRISKINSNYKLCDSYPAKLVVPKSISDEELLRVASFRSRCRLPVLSWRHPESGAVIARCSQ 247 (717)
T ss_pred cChhhHhHHHhcCCChhheeeecccccccccccCccceEeccccCHHHHHHHhhhhhcCccceEEEEcCCCCceEEecCC
Confidence 999 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCChhhHHHHHHHHHhccccccccccCCCcCcCCCCCccccCCCCchhhhhccCCCccCCCCCcccccHHHHH
Q psy1514 250 PLVGVGGKRCKEDERYIQMIMDANAQSHKLFIMDARPRSRGRIPVLSWIHPESQATITRASQPLVGVGGKRCKEDERYIQ 329 (760)
Q Consensus 250 PlvGl~g~rs~eDE~ll~~I~~a~~~s~~l~i~Darp~~~a~~pv~s~~~~~s~~~~~r~sqp~~G~~~~r~~~De~~l~ 329 (760)
|+||+.|+||.+||+||++|+.+++++ |
T Consensus 248 PlVG~~g~Rn~~DEkll~~i~~a~A~~--------------------------------------~-------------- 275 (717)
T KOG4471|consen 248 PLVGWSGKRNKDDEKLLQAIADANAQD--------------------------------------G-------------- 275 (717)
T ss_pred cccchhcccccchHHHHHHHHHhcccc--------------------------------------c--------------
Confidence 999999999999999999999886420 0
Q ss_pred HHHHhcccCCceEEeccCcchHHHHHHhcCCCccCcccccCcEEEecCCcchhHHHHHHHHHHHhcCCCCccccccccCC
Q psy1514 330 MIMDANAQSHKLFIMDARPSANAIANKAKGGGYESEESYQNAELVFLDIHNIHVMRESQRKLKELCFPQIDEARWFSGVD 409 (760)
Q Consensus 330 ~i~~~~~~~~~l~i~D~R~~~~a~an~~~g~G~E~~~~Y~~~~~~fl~i~nih~~r~S~~kl~~~~~~~~~~s~wls~l~ 409 (760)
..+||+|+||||+.||+||+|||||||++++|||+++.|+||+|||+||+|+.|++++|.+..++++|++.|+
T Consensus 276 -------e~~KL~I~DARp~~nAvANkAkGGG~Es~~~Y~naEi~Fl~i~NIH~mR~s~~~~k~~~~~~~d~s~wlS~Le 348 (717)
T KOG4471|consen 276 -------ERRKLLIVDARPYTNAVANKAKGGGYESEEAYPNAEIVFLGIHNIHVMRESLRKLKEICYPSPDESNWLSALE 348 (717)
T ss_pred -------ccceEEEEecccchhhhhccccCCCccChhccccceEEEeecchhHHHHHHHHhHHHhhcCCCCchhHHHhhc
Confidence 1358999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHhhhHHHHHHhhccCceeEEecCCCCCccccccccccccccCchhHHHHHHHHHHHHHHHHHHHhcCCc
Q psy1514 410 STYWLKHIKCILAGACRIVDKVENHKTSVLVHCSDGWDRTAQIDEARWFSGVDSTYWLKHIKCILAGACRIVDKVENHKT 489 (760)
Q Consensus 410 ~s~Wl~~i~~il~ga~~i~~~v~~~~~svlvHcSdGwDrt~qls~~~~~~~l~~~~Wl~~i~~iL~~a~~ia~~l~~~~~ 489 (760)
+|+|| +||+.+|.||++||++|+.+++
T Consensus 349 ~T~WL-----------------------------------------------------~Hi~~lLaga~~Ia~kVe~~~~ 375 (717)
T KOG4471|consen 349 STHWL-----------------------------------------------------EHISSLLAGAVRIADKVESESR 375 (717)
T ss_pred cchHH-----------------------------------------------------HHHHHHHHHHHHHHHHHhcCCc
Confidence 98888 9999999999999999999999
Q ss_pred EEEEeCCCCCCCcchHHHHHHHHhhhhhHHHHhHHHHHHHhhhhcCccccccccCCCCCCCCCCCCcchhhHHHHHHHHH
Q psy1514 490 SVLVHCSDGWDRTAQLTALAMLLLDPYYRTIKGFEVLIEKEWLSFGHKFQQRIGHGDDKHSDADRSPVFLQLIDAVWQVT 569 (760)
Q Consensus 490 sVLVhcsdGwDrT~qvssLaql~LDPyyRTi~GF~~LIEKEW~sfGH~F~~R~gh~~~~~~~~e~sPiFlqFLDcV~Ql~ 569 (760)
|||||||||||||+||+||||||||||||||+||++||||||++|||||++|+||++.++.++++||||||||||||||+
T Consensus 376 sVlVHCSDGWDRT~QlvsLA~LlLDpYYRTieGFqvLVEkeWLsFGHkFadRvGhg~ns~~~ndrsPVFLQwlDcV~Ql~ 455 (717)
T KOG4471|consen 376 SVLVHCSDGWDRTAQLVSLAMLLLDPYYRTIEGFQVLVEKEWLSFGHKFADRVGHGNNSHGDNDRSPVFLQWLDCVWQLM 455 (717)
T ss_pred eEEEEcCCCccchHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhcCChhhhhcCCCCCcccccccCchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCcCCHHHHHHHHHhhhcCCCCccccCcHHHHHHhhhcCCceeeehhhccccccccCCCCCCCC-ceeeccCccc
Q psy1514 570 TMFRHAFEFNEHFLITILDHLYSCRFGTFLFNSDRERNQENMKQRTVSLWSYINSSLDLYKNPLYFPQL-HVLEPIASMR 648 (760)
Q Consensus 570 ~qfP~~FEFne~~L~~l~~h~ys~~fgTFL~nse~eR~~~~~~~~t~SlW~~~~~~~~~f~Np~Y~~~~-~~l~p~~~~~ 648 (760)
||||++|||||.||+.|+||+|||+|||||||||+||.+.++.++|.|||+||++..+.|.||+|++.. .||+|..+++
T Consensus 456 rqfP~aFEFne~fLi~i~dh~ySClFGTFLcN~ekeR~~~~i~~~t~slWs~l~s~~~~f~Np~y~~~s~~vL~Pvas~r 535 (717)
T KOG4471|consen 456 RQFPCAFEFNEAFLIKIVDHLYSCLFGTFLCNSEKEREKEDITERTGSLWSYLNSSLSNFCNPFYDPSSNGVLYPVASVR 535 (717)
T ss_pred HhCCcccccCHHHHHHHHHHHHHhhhhhhhcCCHHHHhhcCcccchhhHHHHHhhcchhhcCcccCchhcccccchHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 8999999999
Q ss_pred CcccccccccccCCCCCCcchHHHHHHHHHHHHHHHHHhHHHHHHhhccCCCCCC--CCCCCCCCc
Q psy1514 649 HIKLWKGLYCRWNPSMRAQDPIYQRTRELLVLKEQLDKSSEECRKELKARMPRTY--IRPNIPKNS 712 (760)
Q Consensus 649 ~~~lW~~~y~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 712 (760)
.+.||.+||+||+|++.++++..+.+.+++...+++++++++|+.+..+++.++. +++.+|.++
T Consensus 536 ~l~LW~~~ylrw~~~~~~~~~~~q~~~~~v~~~~e~~k~~~el~~~~~~~a~~s~~~~r~~s~~~~ 601 (717)
T KOG4471|consen 536 ALELWVQYYLRWNPPMEPQEPGCQRYAELVALSDELKKKVRELQVDEINRATSSLLPERLSSPPNS 601 (717)
T ss_pred chhhceeeeeccCCCCCCCCccchhhhccccchhhhhhHHHHHhhhhhhcccccCcccccCCCccc
Confidence 9999999999999999999999999999999999999999999999998873322 344455443
No 2
>KOG1089|consensus
Probab=100.00 E-value=2.4e-137 Score=1147.06 Aligned_cols=534 Identities=41% Similarity=0.731 Sum_probs=486.0
Q ss_pred EEeccEEEeCCCCC---CeeEEEEEeceEEEEEecC--CCCceEEEecccceeEEEEecCccCCCCCcccEEEEecCccE
Q psy1514 32 GFAREVTYLCPYSG---PARGILSVTNYKLYFRSID--RETPYVVEVPLGVVSRVEKVGGQLSRGENSYGIELFCKDMRN 106 (760)
Q Consensus 32 ~~a~~V~~~~p~~~---~i~GtL~lTnyrLiF~~~~--~~~~~~~~IPL~~I~~Vek~~~~~s~g~~~~~L~I~CKDfR~ 106 (760)
.++++|.+..+..+ ++.|||++|.+|+||+... .+..+++|+|+..|+.|+|.+...........|.|+|||||+
T Consensus 10 ~kv~~v~l~~~~~~~~~~~~Gtl~lt~~hli~~~~~~~~~~~~e~w~l~~~i~~v~k~~~~~~~~~~g~~i~l~CK~~~~ 89 (573)
T KOG1089|consen 10 PKVHNVELHDRENPVTLALVGTLLLTTHHLIFKILQCRQANSKELWLLHDNIDSVEKDPSTFKNSTSGGPITLKCKDFRV 89 (573)
T ss_pred ceecceeEecCCCCccccccceEEEeeceeeeeecccccccchhhccccchHhhhccCcceeeccccCCchhhhhhcceE
Confidence 45677777776644 7999999999999999543 234579999999999999986432111223569999999999
Q ss_pred EEEeeccCCccccchhhhhccccccccchHHHHHHHHHhhcCCCCCCcccccccCCCCC--CC--CccccChHHHHHhcC
Q psy1514 107 LRFGHKQENHSRRNVFEKRFGHKQENHSRRNVFEKLQQYAFPLSHKLPIFAFEYTETFP--EN--GWNIHEPIAELKRMG 182 (760)
Q Consensus 107 l~f~f~~e~~~~~~vf~~~~~~~q~~~~~~~v~~~L~~la~p~s~~~~lFAF~y~~~~~--~~--gW~~yd~~~E~~R~G 182 (760)
+.|.++.+.. +.+++.+|.+++.+.+. ..+|||.|.++.. ++ ||++||++.||+|||
T Consensus 90 ~~~~i~~~~e------------------~~~v~~s~~~ls~~~~~-~~ly~f~y~~~~~~~~~~~gw~~fd~~~ef~r~~ 150 (573)
T KOG1089|consen 90 ISFLIPDDLE------------------CRDVYSSIENLSNIDSI-LQLYAFFYAPNFQNLEDPSGWKMFDPESEFDRMG 150 (573)
T ss_pred EEEeccchHH------------------HHHHHHHHHHhcccCcc-ccccccccCCcccccccccCceecchHhHHHHHh
Confidence 9999998664 48999999999998764 4699999998764 33 999999999999999
Q ss_pred C--CCCCeeEEeecCCccccCCCCcceEecCccCHHHHHHHHHHhhcCCCceEeeeccCCceEEEeccCcccccCCCCCh
Q psy1514 183 V--PNDMWKISRINENYEICDSYPTILAIPTQVTDEEIRVIAQFRSRGRIPVLSWIHPESQATITRASQPLVGVGGKRCK 260 (760)
Q Consensus 183 ~--~~~~WRis~vN~~y~lC~TYP~~lvVP~sisD~~L~~~A~FRs~gR~PvlsW~h~~~~avL~RssQPlvGl~g~rs~ 260 (760)
+ +++.||+|.||++|++|+|||..++||++++|+.|+++|+||++||||||+|+|..|+++|+|||||++|...+||.
T Consensus 151 ~~~~~~~w~~ssvNe~y~vC~tyP~~l~VPksitd~~l~~~~~fRs~gR~Pvl~y~h~~n~aal~R~SqPL~g~~~~Rc~ 230 (573)
T KOG1089|consen 151 IRKGNSHWRISSVNENYEVCPTYPEKLIVPKSITDEDLKKSAKFRSGGRFPVLSYSHKENGAALMRSSQPLSGFIAKRCR 230 (573)
T ss_pred ccCCCCCceEEecCCCeeeccCCCceeEecCCCchHhhhccchhccCCccceEEEEeccCCcceeeecCCCcccccccch
Confidence 9 99999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred hhHHHHHHHHHhccccccccccCCCcCcCCCCCccccCCCCchhhhhccCCCccCCCCCcccccHHHHHHHHHhcccCCc
Q psy1514 261 EDERYIQMIMDANAQSHKLFIMDARPRSRGRIPVLSWIHPESQATITRASQPLVGVGGKRCKEDERYIQMIMDANAQSHK 340 (760)
Q Consensus 261 eDE~ll~~I~~a~~~s~~l~i~Darp~~~a~~pv~s~~~~~s~~~~~r~sqp~~G~~~~r~~~De~~l~~i~~~~~~~~~ 340 (760)
|||+++++|..+++ .+.+
T Consensus 231 ~DE~il~ai~k~~~--------------------------------------------------------------~~~~ 248 (573)
T KOG1089|consen 231 EDEKILEAILKANP--------------------------------------------------------------NSKR 248 (573)
T ss_pred HHHHHHHHHHhhCc--------------------------------------------------------------Cccc
Confidence 99999888876531 1346
Q ss_pred eEEeccCcchHHHHHHhcCCCccCcccccCcEEEecCCcchhHHHHHHHHHHHhcCC-CCccccccccCCchhhHHHHHH
Q psy1514 341 LFIMDARPSANAIANKAKGGGYESEESYQNAELVFLDIHNIHVMRESQRKLKELCFP-QIDEARWFSGVDSTYWLKHIKC 419 (760)
Q Consensus 341 l~i~D~R~~~~a~an~~~g~G~E~~~~Y~~~~~~fl~i~nih~~r~S~~kl~~~~~~-~~~~s~wls~l~~s~Wl~~i~~ 419 (760)
++|+|+||++|||||+|+|||||++++|+++++.|++|+|||+||+||+||+++|.+ ...+++|++.||+|+||
T Consensus 249 ~yivDtRp~~nA~an~A~g~g~En~~~Y~~~~~~f~~i~nIh~v~~s~~kl~e~c~~~~~~~~~~ls~LE~SgWL----- 323 (573)
T KOG1089|consen 249 GYIVDTRPRTNAMANRAKGGGYENEDNYSQWKFLFLGIENIHVVRSSLQKLLEVCNNFLPTMDKWLSLLESSGWL----- 323 (573)
T ss_pred eeEEeccchhhHHHHHhhcCCCcchhhHHHHHHHhcCcchHHHHHHHHHHHHHHHhccCccHHHHHHHhhhccHH-----
Confidence 899999999999999999999999999999999999999999999999999999984 45667888888888888
Q ss_pred HHhhhHHHHHHhhccCceeEEecCCCCCccccccccccccccCchhHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCC
Q psy1514 420 ILAGACRIVDKVENHKTSVLVHCSDGWDRTAQIDEARWFSGVDSTYWLKHIKCILAGACRIVDKVENHKTSVLVHCSDGW 499 (760)
Q Consensus 420 il~ga~~i~~~v~~~~~svlvHcSdGwDrt~qls~~~~~~~l~~~~Wl~~i~~iL~~a~~ia~~l~~~~~sVLVhcsdGw 499 (760)
+||+.+|.+|+.||++|+.+|.||||||||||
T Consensus 324 ------------------------------------------------~~i~~~L~~a~~ia~~l~~~~~sVlvhcsdGw 355 (573)
T KOG1089|consen 324 ------------------------------------------------KHIRAILKAAAEIAKCLSSEGASVLVHCSDGW 355 (573)
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHHHHHhCCCeEEEEccCCc
Confidence 99999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHhhhhhHHHHhHHHHHHHhhhhcCccccccccCCCCC-CCCCCCCcchhhHHHHHHHHHhhccCCCcC
Q psy1514 500 DRTAQLTALAMLLLDPYYRTIKGFEVLIEKEWLSFGHKFQQRIGHGDDK-HSDADRSPVFLQLIDAVWQVTTMFRHAFEF 578 (760)
Q Consensus 500 DrT~qvssLaql~LDPyyRTi~GF~~LIEKEW~sfGH~F~~R~gh~~~~-~~~~e~sPiFlqFLDcV~Ql~~qfP~~FEF 578 (760)
|||+|||||||||||||||||+|||+||||||++|||||++||||.... ...++.||||+|||||||||++|||++|||
T Consensus 356 DrT~qV~SLaQllLDP~yRTi~GFqsLIeKeWi~~GH~F~~Rc~hl~~~~~~~ke~SPvF~qFLDcvwQl~~QfP~~FEF 435 (573)
T KOG1089|consen 356 DRTCQVSSLAQLLLDPYYRTIKGFQSLIEKEWISFGHKFLDRCGHLAYNDGDSKEESPVFLQFLDCVWQLLEQFPCAFEF 435 (573)
T ss_pred chhHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHcCCcHHHhcCCcccccCCCcccCcHHHHHHHHHHHHHhhCCcceeh
Confidence 9999999999999999999999999999999999999999999998522 235799999999999999999999999999
Q ss_pred CHHHHHHHHHhhhcCCCCccccCcHHHHHHhhhcCCceeeehhhccccccccCCCCCCCCceeeccCcccC----ccccc
Q psy1514 579 NEHFLITILDHLYSCRFGTFLFNSDRERNQENMKQRTVSLWSYINSSLDLYKNPLYFPQLHVLEPIASMRH----IKLWK 654 (760)
Q Consensus 579 ne~~L~~l~~h~ys~~fgTFL~nse~eR~~~~~~~~t~SlW~~~~~~~~~f~Np~Y~~~~~~l~p~~~~~~----~~lW~ 654 (760)
||+||+.|++|+|+|+|||||+||||||.++++..+|.|||+|+.++++.|+||+|+++..+++|+.++.. +++|.
T Consensus 436 ne~fLi~L~~h~ys~qfGtFl~NsekeR~e~~~~~kt~slW~~~~~~~~~f~Nply~~~~~~~~~~l~P~~~~~~l~~W~ 515 (573)
T KOG1089|consen 436 NERFLIKLHEHAYSSQFGTFLGNSEKERRELNLSEKTTSLWDYLLPRKEEFVNPLYDPRYLVIWPILAPQTATLSLQVWS 515 (573)
T ss_pred hHHHHHHHHHhhHHhhhccccccCHHHHHHhcccccceehHHhHhhhhhhhcCccccccccceeeccCcccccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888 99999
Q ss_pred ccccccCCCCCCcchHHHHHHHHHHHHHHHHHhHHHHHHhhccCC
Q psy1514 655 GLYCRWNPSMRAQDPIYQRTRELLVLKEQLDKSSEECRKELKARM 699 (760)
Q Consensus 655 ~~y~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 699 (760)
++|.||++.+.++.+..+.+..+++..++|+.++..++++.+...
T Consensus 516 ~~y~r~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 560 (573)
T KOG1089|consen 516 SLYERWDEGLSPRTPSTETIQLLMEREKELQPKVLSLRRSDAELK 560 (573)
T ss_pred HHHHhhccCCCccccccchhHHHHHHHHHHHHHHHHhhhcccccc
Confidence 999999999999988888888888889999999999998887764
No 3
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=100.00 E-value=3e-106 Score=881.52 Aligned_cols=343 Identities=55% Similarity=1.025 Sum_probs=269.2
Q ss_pred cccccccCCCCCC-----CCccccChHHHHHhcCCCCCC-eeEEeecCCccccCCCCcceEecCccCHHHHHHHHHHhhc
Q psy1514 154 PIFAFEYTETFPE-----NGWNIHEPIAELKRMGVPNDM-WKISRINENYEICDSYPTILAIPTQVTDEEIRVIAQFRSR 227 (760)
Q Consensus 154 ~lFAF~y~~~~~~-----~gW~~yd~~~E~~R~G~~~~~-WRis~vN~~y~lC~TYP~~lvVP~sisD~~L~~~A~FRs~ 227 (760)
+||||+|.++... +||.+||+..||+|||++.+. |||+.+|++|++|+|||..+|||++++|++|.++|+||++
T Consensus 1 ~LFAF~y~~~~~~~~~~~~~~~~~d~~~E~~R~g~~~~~~Wri~~~N~~y~~c~tYP~~lvVP~~i~D~~l~~~a~~r~~ 80 (353)
T PF06602_consen 1 DLFAFSYQPPKSELKSKSNGWKIYDWEREFERLGLPSDSSWRISDINSNYELCPTYPSLLVVPSSISDEELKKSAKFRSK 80 (353)
T ss_dssp TSGGGT---S-SSHHHHH-HHCT--HHHHHHHTT-SCSS-EEEEGCCTTSSS-TTS-SSEEEETTS-HHHHHHHHHHBGG
T ss_pred CcccccCCCCCCcccccCCCccccCHHHHHHHhCCCCCCCeeEEEEcCCCCccccccceEEEEEEecHHHHHHhhhhccC
Confidence 4899999987653 599999999999999998865 9999999999999999999999999999999999999999
Q ss_pred CCCceEeeeccCCceEEEeccCcccccCCCCChhhHHHHHHHHHhccccccccccCCCcCcCCCCCccccCCCCchhhhh
Q psy1514 228 GRIPVLSWIHPESQATITRASQPLVGVGGKRCKEDERYIQMIMDANAQSHKLFIMDARPRSRGRIPVLSWIHPESQATIT 307 (760)
Q Consensus 228 gR~PvlsW~h~~~~avL~RssQPlvGl~g~rs~eDE~ll~~I~~a~~~s~~l~i~Darp~~~a~~pv~s~~~~~s~~~~~ 307 (760)
||||||+|+||.|||+|+|||||++|+.++||.+||+|+.++....
T Consensus 81 ~R~Pv~~W~~~~~~a~L~Rssqp~~g~~~~r~~~De~ll~~~i~~~---------------------------------- 126 (353)
T PF06602_consen 81 GRFPVLSWRHPENGAVLLRSSQPLVGLSNSRSKEDEKLLQAAISSS---------------------------------- 126 (353)
T ss_dssp G---EEEEE-TTT--EEEEEE-B--TTTT---HHHHHHH-HHH--H----------------------------------
T ss_pred CccceEEEeecCCCeEEEEeccccccccccCchhhHHHHHHHHhhc----------------------------------
Confidence 9999999999999999999999999999999999999995443110
Q ss_pred ccCCCccCCCCCcccccHHHHHHHHHhcccCCceEEeccCcchHHHHHHhcCCCccCcccccCcEEEecCCcchhHHHHH
Q psy1514 308 RASQPLVGVGGKRCKEDERYIQMIMDANAQSHKLFIMDARPSANAIANKAKGGGYESEESYQNAELVFLDIHNIHVMRES 387 (760)
Q Consensus 308 r~sqp~~G~~~~r~~~De~~l~~i~~~~~~~~~l~i~D~R~~~~a~an~~~g~G~E~~~~Y~~~~~~fl~i~nih~~r~S 387 (760)
..++...+++|+|+||.+||++|+++|||+|+.++|++|+++|++|+|||.||+|
T Consensus 127 -------------------------~~~~~~~~~~i~D~R~~~~a~~n~~~G~G~E~~~~Y~~~~i~fl~i~nih~vr~s 181 (353)
T PF06602_consen 127 -------------------------KSNPSKSKLVIVDARPKLNALANRAKGGGYENESNYPNCEIIFLNIPNIHSVRDS 181 (353)
T ss_dssp -------------------------HHSTT-SSEEEEE-SSCHHHHHHHHTT-S---TTTSTTEEEEE-----HHHHHHH
T ss_pred -------------------------ccccccCceEEEcchhhhhhhhhhhhccCCccccccccceEEeeecCcHHHHHHH
Confidence 0011245799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc--CCCCccccccccCCchhhHHHHHHHHhhhHHHHHHhhccCceeEEecCCCCCccccccccccccccCchh
Q psy1514 388 QRKLKELC--FPQIDEARWFSGVDSTYWLKHIKCILAGACRIVDKVENHKTSVLVHCSDGWDRTAQIDEARWFSGVDSTY 465 (760)
Q Consensus 388 ~~kl~~~~--~~~~~~s~wls~l~~s~Wl~~i~~il~ga~~i~~~v~~~~~svlvHcSdGwDrt~qls~~~~~~~l~~~~ 465 (760)
|.||+++| ....++.+|++.+++++||
T Consensus 182 ~~kl~~~~~~~~~~~~~~~~~~le~s~Wl--------------------------------------------------- 210 (353)
T PF06602_consen 182 FQKLRELCSNTNSDNDDSWLSSLESSNWL--------------------------------------------------- 210 (353)
T ss_dssp HHHHHHHH-SSSS--HHHHHHHHHHCTHH---------------------------------------------------
T ss_pred HHHHHHHhcccccCCchhhhhccccCChH---------------------------------------------------
Confidence 99999999 2233455677777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCcchHHHHHHHHhhhhhHHHHhHHHHHHHhhhhcCccccccccCC
Q psy1514 466 WLKHIKCILAGACRIVDKVENHKTSVLVHCSDGWDRTAQLTALAMLLLDPYYRTIKGFEVLIEKEWLSFGHKFQQRIGHG 545 (760)
Q Consensus 466 Wl~~i~~iL~~a~~ia~~l~~~~~sVLVhcsdGwDrT~qvssLaql~LDPyyRTi~GF~~LIEKEW~sfGH~F~~R~gh~ 545 (760)
+||+.+|.+|..||++|+.++.+|||||+||||||+|||||+|||||||||||+||++||||||++|||||.+|+||+
T Consensus 211 --~~v~~~L~~a~~i~~~l~~~~~~Vlvh~~dGwDrt~q~~sL~ql~lDpyyRTi~GF~~LIeKeW~~fGH~F~~R~~~~ 288 (353)
T PF06602_consen 211 --DHVRSILSGASRIADLLHDEGSSVLVHCSDGWDRTSQLSSLAQLLLDPYYRTIEGFQVLIEKEWISFGHPFADRCGHG 288 (353)
T ss_dssp --HHHHHHHHHHHHHHHHHHTT--EEEEECTTSSSHHHHHHHHHHHHH-CGGGSHHHHHHHHHHHTTTTT--HHHHHTTT
T ss_pred --HHHHHHHHHHHHHHHHhhccCceEEEEcCCCCcccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCcchhhhcCCc
Confidence 999999999999999998888999999999999999999999999999999999999999999999999999999998
Q ss_pred -CCCCCCCCCCcchhhHHHHHHHHHhhccCCCcCCHHHHHHHHHhhhcCCCCccccCcHHHHHH
Q psy1514 546 -DDKHSDADRSPVFLQLIDAVWQVTTMFRHAFEFNEHFLITILDHLYSCRFGTFLFNSDRERNQ 608 (760)
Q Consensus 546 -~~~~~~~e~sPiFlqFLDcV~Ql~~qfP~~FEFne~~L~~l~~h~ys~~fgTFL~nse~eR~~ 608 (760)
.....++++||||+|||||||||++|||++|||||.||++|+||+|||+|||||||||+||.+
T Consensus 289 ~~~~~~~~~~sPvFl~FLDcV~ql~~q~P~~FEFne~~L~~l~~~~~s~~fgtFl~n~e~eR~~ 352 (353)
T PF06602_consen 289 SSSSSSSSERSPVFLQFLDCVWQLLRQFPTAFEFNESLLIFLADHSYSGRFGTFLFNSEKEREE 352 (353)
T ss_dssp --SSTTGCC---HHHHHHHHHHHHHHHSTTT-SB-HHHHHHHHHHHCCTSSTTT-SSSHHHHHH
T ss_pred ccccccccccccchhHHHHHHHHHHHhCCCceecCHHHHHHHHHHHhcCCCCccccCCHHHhcc
Confidence 333457899999999999999999999999999999999999999999999999999999986
No 4
>KOG1090|consensus
Probab=100.00 E-value=5.4e-75 Score=655.86 Aligned_cols=553 Identities=29% Similarity=0.464 Sum_probs=402.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEeccEEEeCCCC-------------CCeeEEEEEeceEEEEEecCCCC-----ce
Q psy1514 8 SNNNEPIQTSRPDDLPLLPGEIIQGFAREVTYLCPYS-------------GPARGILSVTNYKLYFRSIDRET-----PY 69 (760)
Q Consensus 8 ~~~~~~~~~~~~~~~~lLPGE~i~~~a~~V~~~~p~~-------------~~i~GtL~lTnyrLiF~~~~~~~-----~~ 69 (760)
+.+.++++++ ..+|.|||||.++.---++.++ |.. -+.+|.|++||||+||++...+. ..
T Consensus 773 ~~r~phlqKp-~~~P~LlpGE~lv~D~lrcyLl-pdgrE~e~~~~~~~~LlPAeGalFLTnYRVIFkG~p~Dpl~~eqvi 850 (1732)
T KOG1090|consen 773 MSRGPHLQKP-NFDPVLLPGEFLVSDPLRCYLL-PDGRESEMSLNRLENLLPAEGALFLTNYRVIFKGKPVDPLATEQVI 850 (1732)
T ss_pred hccCCcccCC-CCCccccCchhhccCCceEEEe-cCcccccccccccccccccCcceEEeeeEEEecCCCCCcccccceE
Confidence 3466778887 7899999999987543344333 321 15899999999999999876543 34
Q ss_pred EEEecccceeEEEEecCccCCC--CCcccEEEEecCccEEEEeeccCCccccchhhhhccccccccchHHHHH-HHHHhh
Q psy1514 70 VVEVPLGVVSRVEKVGGQLSRG--ENSYGIELFCKDMRNLRFGHKQENHSRRNVFEKRFGHKQENHSRRNVFE-KLQQYA 146 (760)
Q Consensus 70 ~~~IPL~~I~~Vek~~~~~s~g--~~~~~L~I~CKDfR~l~f~f~~e~~~~~~vf~~~~~~~q~~~~~~~v~~-~L~~la 146 (760)
+-.+|+.+..+.+|+....... .-..+|+|+---|+.++.+|+.+...+ -.+++. .|.++.
T Consensus 851 VrtfPlasl~keKkisv~~~~~dQll~~Glqlrs~~fql~k~Afd~ev~~d----------------~~E~frk~l~K~r 914 (1732)
T KOG1090|consen 851 VRTFPLASLEKEKKISVKKLIPDQLLEKGLQLRSIIFQLSKCAFDIEVAFD----------------EDEIFRKALEKFR 914 (1732)
T ss_pred EEEeehhhhhhhhhhhhhccChHHHHHhcchhhhHHHHHHHhhcCcccccc----------------HHHHHHHHHHHhc
Confidence 6789999999988876431110 012367887778888888888754321 134443 567777
Q ss_pred cCCCCCCcccccccCCC---C--------------------------CCCCcc------------ccChH----------
Q psy1514 147 FPLSHKLPIFAFEYTET---F--------------------------PENGWN------------IHEPI---------- 175 (760)
Q Consensus 147 ~p~s~~~~lFAF~y~~~---~--------------------------~~~gW~------------~yd~~---------- 175 (760)
.|... ..-|||.+... . .+..|- -++..
T Consensus 915 ~p~d~-~~~faF~~y~Tk~k~~~l~~~s~k~l~~nakk~g~t~rKk~td~~~~~~~~~~~~si~de~~~~eEle~~~~sa 993 (1732)
T KOG1090|consen 915 EPIDT-NSHFAFAFYNTKKKMKVLENGSHKFLTLNAKKRGQTFRKKKTDPSWIHRGQSPPESIQDEISVSEELELTPKSA 993 (1732)
T ss_pred CCccc-cceeeeeeccccccchhhhccchhhhhhhhhhhhhhhhcccCCcchhhcCCCCCccccccchhhhhhccCcccc
Confidence 88653 24677754321 0 011231 11111
Q ss_pred ------HHHHhcCCCC--CCeeEEeecCCccccCCCCcceEecCccCHHHHHHHHHHhhcCCCceEeeeccCCceEEEec
Q psy1514 176 ------AELKRMGVPN--DMWKISRINENYEICDSYPTILAIPTQVTDEEIRVIAQFRSRGRIPVLSWIHPESQATITRA 247 (760)
Q Consensus 176 ------~E~~R~G~~~--~~WRis~vN~~y~lC~TYP~~lvVP~sisD~~L~~~A~FRs~gR~PvlsW~h~~~~avL~Rs 247 (760)
.+|.|+|... ..||.+..|.+|.+|+|||+.+|||..++|+.|.+++++..+.||||++|+|. |||+|+|+
T Consensus 994 ~~~~~~~d~~rl~ers~i~d~~rlg~N~~YaiCrSYPg~~IvP~~~~d~al~~v~rcf~~~R~Pvv~Wr~~-ngAlLvR~ 1072 (1732)
T KOG1090|consen 994 LKPSDVMDYSRLGERSKIVDLRRLGSNLDYAICRSYPGLLIVPQEVQDNALQKVSRCFVQNRLPVVVWRNE-NGALLVRA 1072 (1732)
T ss_pred CCccccccHHHHHHHHHHHHHHHhccCccchhhcCCCceEeccccccHHHHHHHHHHHhcccccceeeecC-CcceEEec
Confidence 2344444321 26888888999999999999999999999999999999999999999999994 77999999
Q ss_pred cCcc----cccC-------------CCCChhhHHHHHHHHHhccccccccccCCCcCcCCCCCccccCCCCchhhhhccC
Q psy1514 248 SQPL----VGVG-------------GKRCKEDERYIQMIMDANAQSHKLFIMDARPRSRGRIPVLSWIHPESQATITRAS 310 (760)
Q Consensus 248 sQPl----vGl~-------------g~rs~eDE~ll~~I~~a~~~s~~l~i~Darp~~~a~~pv~s~~~~~s~~~~~r~s 310 (760)
+||- ||+- -.++.|+|+|+++..++++......++.+.. ..+..|+.+.+....++
T Consensus 1073 g~~~sk~vvg~lK~~~~~s~nas~~~ss~~eqekyl~a~vsSmp~~~~~sg~n~~~-------~s~~~hm~s~~k~~~s~ 1145 (1732)
T KOG1090|consen 1073 GAFTSKDVVGKLKAQNAPSPNASQLDSSSLEQEKYLQAVVSSMPEYADASGRNALI-------GSSSAHMGSHAKLSNSS 1145 (1732)
T ss_pred CCCccccHHhhhccccCCCCCcccccccchhHHHHHHHHHhcChhhhhhhccchhh-------cchhhhcccccccccch
Confidence 9865 3431 1578999999999999987543322221111 11223444433222121
Q ss_pred CCccC------CCCCc-ccccHHHHHHHHHhcc-cCCc-eEEeccCcchHHHHHHhcCCCccCcccccCcEEEecCCcch
Q psy1514 311 QPLVG------VGGKR-CKEDERYIQMIMDANA-QSHK-LFIMDARPSANAIANKAKGGGYESEESYQNAELVFLDIHNI 381 (760)
Q Consensus 311 qp~~G------~~~~r-~~~De~~l~~i~~~~~-~~~~-l~i~D~R~~~~a~an~~~g~G~E~~~~Y~~~~~~fl~i~ni 381 (760)
|-... .+++. ...|..=+. .|+ .... .-| -|-.+.++++|+.++ -..+.-.+|+++.++...+
T Consensus 1146 ~~~rs~~l~td~~d~~~~~~~g~~~t----~ng~p~~p~~r~--~r~aLYiLgeK~q~k--~~~~id~~ae~IpV~~~e~ 1217 (1732)
T KOG1090|consen 1146 QRARSYALPTDYADKFSTFNDGCTLT----QNGAPPFPTTRI--RRKALYILGEKAQLK--VRIDIDQQAELIPVEVFEE 1217 (1732)
T ss_pred hhhhhccCCcccccccccccCCCccc----ccCCCCCCCcch--hhhhhhhccchhccc--ccCChhhccceeeeechhH
Confidence 11100 00000 000100000 000 0000 000 133455678888877 3445567999999999999
Q ss_pred hHHHHHHHHHHHhcCCCC-----ccccccccCCchhhHHHHHHHHhhhHHHHHHhhccCceeEEecCCCCCccccccccc
Q psy1514 382 HVMRESQRKLKELCFPQI-----DEARWFSGVDSTYWLKHIKCILAGACRIVDKVENHKTSVLVHCSDGWDRTAQIDEAR 456 (760)
Q Consensus 382 h~~r~S~~kl~~~~~~~~-----~~s~wls~l~~s~Wl~~i~~il~ga~~i~~~v~~~~~svlvHcSdGwDrt~qls~~~ 456 (760)
..+|.||+||+.+|.|+. +...|+.++++|.||
T Consensus 1218 rq~r~sfkkl~kaC~p~~~~~e~~~~SFl~s~e~S~Wl------------------------------------------ 1255 (1732)
T KOG1090|consen 1218 RQVRASFKKLLKACVPGCPAAEPSPASFLESLEDSEWL------------------------------------------ 1255 (1732)
T ss_pred HHHHHHHHHHHHHhCCCCccCCCCHHHHHHHHhhcchH------------------------------------------
Confidence 999999999999999853 233566666666666
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCcchHHHHHHHHhhhhhHHHHhHHHHHHHhhhhcCc
Q psy1514 457 WFSGVDSTYWLKHIKCILAGACRIVDKVENHKTSVLVHCSDGWDRTAQLTALAMLLLDPYYRTIKGFEVLIEKEWLSFGH 536 (760)
Q Consensus 457 ~~~~l~~~~Wl~~i~~iL~~a~~ia~~l~~~~~sVLVhcsdGwDrT~qvssLaql~LDPyyRTi~GF~~LIEKEW~sfGH 536 (760)
..|+.+|+-+..||+.|+..++||+|.-.||||-|+|++||+||++||||||++||++|+||||++|||
T Consensus 1256 -----------qqIskllqlS~~VV~Lldl~~SSV~v~LEdG~dITtqlsSl~QLlsDPyYRtldGFrvLVEKEWLaFGH 1324 (1732)
T KOG1090|consen 1256 -----------QQISKLLQLSVLVVELLDLSNSSVLVGLEDGWDITTQLSSLSQLLSDPYYRTLDGFRVLVEKEWLAFGH 1324 (1732)
T ss_pred -----------HHHHHHHhhhhhhhhhhhccCCeEEEEeccCchhhhhhhhhhhhcCChhhhcccchhhhhhhhhhhhcc
Confidence 999999999999999999777999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCCCcchhhHHHHHHHHHhhccCCCcCCHHHHHHHHHhhhcCCCCccccCcHHHHHHhhhc----
Q psy1514 537 KFQQRIGHGDDKHSDADRSPVFLQLIDAVWQVTTMFRHAFEFNEHFLITILDHLYSCRFGTFLFNSDRERNQENMK---- 612 (760)
Q Consensus 537 ~F~~R~gh~~~~~~~~e~sPiFlqFLDcV~Ql~~qfP~~FEFne~~L~~l~~h~ys~~fgTFL~nse~eR~~~~~~---- 612 (760)
.| +|.. ...+|+|+||||||||+.+|||.+||||..||.+|++|..||+|-|||+|||.||.+.++.
T Consensus 1325 rF-Hr~~--------~~fsPsFlqFLDcVhQi~~QfPmaFEFs~FYl~FLaYHsvs~rFRTFl~Dce~eR~esg~~~~ek 1395 (1732)
T KOG1090|consen 1325 RF-HRDT--------ETFSPSFLQFLDCVHQISQQFPMAFEFSYFYLSFLAYHSVSGRFRTFLLDCEEERIESGLLYEEK 1395 (1732)
T ss_pred hh-cccc--------cccCchHHHHHHHHHHHHHhccchhhhHHHHHHHHhhhccchhhhhhhccccHHhhhhhhhHHhh
Confidence 99 6532 4578999999999999999999999999999999999999999999999999999987642
Q ss_pred ---------CCceeeehhhcc---ccccccCCCCCCCC-ceeeccCcccCccccccccc
Q psy1514 613 ---------QRTVSLWSYINS---SLDLYKNPLYFPQL-HVLEPIASMRHIKLWKGLYC 658 (760)
Q Consensus 613 ---------~~t~SlW~~~~~---~~~~f~Np~Y~~~~-~~l~p~~~~~~~~lW~~~y~ 658 (760)
--|.|+|.||.. ....|.|-+|.+.. .++.|..+...|++|. ||.
T Consensus 1396 ~er~~~p~nr~~~svweyI~r~~k~Tp~FyN~lYa~~~s~ilrP~snV~~l~~W~-fyt 1453 (1732)
T KOG1090|consen 1396 GERRGQPLNRATISVWEYIDRLSKRTPAFYNYLYAPEDSEILRPYSNVSNLKVWD-FYT 1453 (1732)
T ss_pred ccccCCCcccccchHHHHHHHhcccChhHHHHhhCcCCcccccccCCccccceec-cch
Confidence 236899999975 34679999999988 8999999999999994 553
No 5
>KOG1089|consensus
Probab=99.82 E-value=2.1e-21 Score=218.55 Aligned_cols=161 Identities=22% Similarity=0.418 Sum_probs=126.6
Q ss_pred CCccccccccCCchhhHHHHHHHHhhhHHHHHHhhccCceeEEecCCCCCccccccccccccccCchhHHHHHHHHHHHH
Q psy1514 398 QIDEARWFSGVDSTYWLKHIKCILAGACRIVDKVENHKTSVLVHCSDGWDRTAQIDEARWFSGVDSTYWLKHIKCILAGA 477 (760)
Q Consensus 398 ~~~~s~wls~l~~s~Wl~~i~~il~ga~~i~~~v~~~~~svlvHcSdGwDrt~qls~~~~~~~l~~~~Wl~~i~~iL~~a 477 (760)
.++.++||++|. .+|..|+.+++++..++.|||||||||||||.|+++++.+ +||+++ .++.|.
T Consensus 316 ~LE~SgWL~~i~---------~~L~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLaQl-lLDP~y------RTi~GF 379 (573)
T KOG1089|consen 316 LLESSGWLKHIR---------AILKAAAEIAKCLSSEGASVLVHCSDGWDRTCQVSSLAQL-LLDPYY------RTIKGF 379 (573)
T ss_pred HhhhccHHHHHH---------HHHHHHHHHHHHHHhCCCeEEEEccCCcchhHHHHHHHHH-HhCchh------hhHHHH
Confidence 456789999995 7899999999999999999999999999999999999988 889988 367777
Q ss_pred HHHHHH--HhcCCcEEEEeCCCC---CCCcchHHHHHHHHhhhhhHHHHhHHHHHHHh--h--hhcCccccccccCCCCC
Q psy1514 478 CRIVDK--VENHKTSVLVHCSDG---WDRTAQLTALAMLLLDPYYRTIKGFEVLIEKE--W--LSFGHKFQQRIGHGDDK 548 (760)
Q Consensus 478 ~~ia~~--l~~~~~sVLVhcsdG---wDrT~qvssLaql~LDPyyRTi~GF~~LIEKE--W--~sfGH~F~~R~gh~~~~ 548 (760)
..++++ |..| +..+-.|.+= |-+..-++++++++||+.++.++.|+.++|.+ + ..+-|.|+...|....+
T Consensus 380 qsLIeKeWi~~G-H~F~~Rc~hl~~~~~~~ke~SPvF~qFLDcvwQl~~QfP~~FEFne~fLi~L~~h~ys~qfGtFl~N 458 (573)
T KOG1089|consen 380 QSLIEKEWISFG-HKFLDRCGHLAYNDGDSKEESPVFLQFLDCVWQLLEQFPCAFEFNERFLIKLHEHAYSSQFGTFLGN 458 (573)
T ss_pred HHHHHHHHHHcC-CcHHHhcCCcccccCCCcccCcHHHHHHHHHHHHHhhCCcceehhHHHHHHHHHhhHHhhhcccccc
Confidence 777776 4433 6666666653 55567789999999999999999999998887 4 56789999988876654
Q ss_pred CCCCCCCcchhh-HHHHHHHHHhhccCCC
Q psy1514 549 HSDADRSPVFLQ-LIDAVWQVTTMFRHAF 576 (760)
Q Consensus 549 ~~~~e~sPiFlq-FLDcV~Ql~~qfP~~F 576 (760)
+++||--.-+. -+-+||-.+.+.-..|
T Consensus 459 -sekeR~e~~~~~kt~slW~~~~~~~~~f 486 (573)
T KOG1089|consen 459 -SEKERRELNLSEKTTSLWDYLLPRKEEF 486 (573)
T ss_pred -CHHHHHHhcccccceehHHhHhhhhhhh
Confidence 33443222221 1668999988855444
No 6
>KOG4471|consensus
Probab=99.71 E-value=2.3e-18 Score=191.40 Aligned_cols=190 Identities=24% Similarity=0.402 Sum_probs=141.3
Q ss_pred CCCCccccccccCCchhhHHHHHHHHhhhHHHHHHhhccCceeEEecCCCCCccccccccccccccCchhHHHHHHHHHH
Q psy1514 396 FPQIDEARWFSGVDSTYWLKHIKCILAGACRIVDKVENHKTSVLVHCSDGWDRTAQIDEARWFSGVDSTYWLKHIKCILA 475 (760)
Q Consensus 396 ~~~~~~s~wls~l~~s~Wl~~i~~il~ga~~i~~~v~~~~~svlvHcSdGwDrt~qls~~~~~~~l~~~~Wl~~i~~iL~ 475 (760)
...+++++||++|. .+|+||++||+.|+.++.|||||||||||||+|+++++.. +||+|| ..+.
T Consensus 344 lS~Le~T~WL~Hi~---------~lLaga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~L-lLDpYY------RTie 407 (717)
T KOG4471|consen 344 LSALESTHWLEHIS---------SLLAGAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAML-LLDPYY------RTIE 407 (717)
T ss_pred HHhhccchHHHHHH---------HHHHHHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHH-Hhchhh------hhhh
Confidence 34678899999995 7999999999999999999999999999999999999977 899999 4788
Q ss_pred HHHHHHHH--HhcCCcEEEEeCCCCCCC--cchHHHHHHHHhhhhhHHHHhHHHHHHHh--h--hhcCccccccccCCCC
Q psy1514 476 GACRIVDK--VENHKTSVLVHCSDGWDR--TAQLTALAMLLLDPYYRTIKGFEVLIEKE--W--LSFGHKFQQRIGHGDD 547 (760)
Q Consensus 476 ~a~~ia~~--l~~~~~sVLVhcsdGwDr--T~qvssLaql~LDPyyRTi~GF~~LIEKE--W--~sfGH~F~~R~gh~~~ 547 (760)
|...+|++ |..| +..--.|++|=+. -.--|+++...||.+.+-.+.|++.+|.. + .-+-|-++.|.|....
T Consensus 408 GFqvLVEkeWLsFG-HkFadRvGhg~ns~~~ndrsPVFLQwlDcV~Ql~rqfP~aFEFne~fLi~i~dh~ySClFGTFLc 486 (717)
T KOG4471|consen 408 GFQVLVEKEWLSFG-HKFADRVGHGNNSHGDNDRSPVFLQWLDCVWQLMRQFPCAFEFNEAFLIKIVDHLYSCLFGTFLC 486 (717)
T ss_pred hhHHHHHHHHHhcC-ChhhhhcCCCCCcccccccCchhHHHHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhhhhhhc
Confidence 88888877 5544 5555566665532 34467799999999999999999988875 3 3456888888887654
Q ss_pred CCCCCCCCcchh-hHHHHHHHHHhhccCCCcCCHHHHHHHHHhhhcCCCCccccCcHHHHHHhhh-cCCceeeehhh
Q psy1514 548 KHSDADRSPVFL-QLIDAVWQVTTMFRHAFEFNEHFLITILDHLYSCRFGTFLFNSDRERNQENM-KQRTVSLWSYI 622 (760)
Q Consensus 548 ~~~~~e~sPiFl-qFLDcV~Ql~~qfP~~FEFne~~L~~l~~h~ys~~fgTFL~nse~eR~~~~~-~~~t~SlW~~~ 622 (760)
+ +++||.--=+ --+-|+|-+++---.. |-+++|++..+.....+ ..+...||.-+
T Consensus 487 N-~ekeR~~~~i~~~t~slWs~l~s~~~~-------------------f~Np~y~~~s~~vL~Pvas~r~l~LW~~~ 543 (717)
T KOG4471|consen 487 N-SEKEREKEDITERTGSLWSYLNSSLSN-------------------FCNPFYDPSSNGVLYPVASVRALELWVQY 543 (717)
T ss_pred C-CHHHHhhcCcccchhhHHHHHhhcchh-------------------hcCcccCchhcccccchHhhhchhhceee
Confidence 4 3333322111 2356888887654332 67788888877554433 34557788743
No 7
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=99.63 E-value=3e-17 Score=180.63 Aligned_cols=130 Identities=28% Similarity=0.518 Sum_probs=95.4
Q ss_pred ccccccccCCchhhHHHHHHHHhhhHHHHHHhhccCceeEEecCCCCCccccccccccccccCchhHHHHHHHHHHHHHH
Q psy1514 400 DEARWFSGVDSTYWLKHIKCILAGACRIVDKVENHKTSVLVHCSDGWDRTAQIDEARWFSGVDSTYWLKHIKCILAGACR 479 (760)
Q Consensus 400 ~~s~wls~l~~s~Wl~~i~~il~ga~~i~~~v~~~~~svlvHcSdGwDrt~qls~~~~~~~l~~~~Wl~~i~~iL~~a~~ 479 (760)
++++||+.|. .+|++|.++++.++.++.+|||||+||||||+|++++..+ ++|+++ .++.|...
T Consensus 205 e~s~Wl~~v~---------~~L~~a~~i~~~l~~~~~~Vlvh~~dGwDrt~q~~sL~ql-~lDpyy------RTi~GF~~ 268 (353)
T PF06602_consen 205 ESSNWLDHVR---------SILSGASRIADLLHDEGSSVLVHCSDGWDRTSQLSSLAQL-LLDPYY------RTIEGFQV 268 (353)
T ss_dssp HHCTHHHHHH---------HHHHHHHHHHHHHHTT--EEEEECTTSSSHHHHHHHHHHH-HH-CGG------GSHHHHHH
T ss_pred ccCChHHHHH---------HHHHHHHHHHHHhhccCceEEEEcCCCCcccHHHHHHHHH-HHHhhh------hhHHHHHH
Confidence 4679999985 7899999999999999999999999999999999999988 779988 47888888
Q ss_pred HHHH--HhcCCcEEEEeCCCC---CCCcchHHHHHHHHhhhhhHHHHhHHHHHHHh--h--hhcCccccccccCCC
Q psy1514 480 IVDK--VENHKTSVLVHCSDG---WDRTAQLTALAMLLLDPYYRTIKGFEVLIEKE--W--LSFGHKFQQRIGHGD 546 (760)
Q Consensus 480 ia~~--l~~~~~sVLVhcsdG---wDrT~qvssLaql~LDPyyRTi~GF~~LIEKE--W--~sfGH~F~~R~gh~~ 546 (760)
++++ +..| ++..-.|..| .....+-++++.++||++|+-++.|+.-+|.. + .-+-|-|+.|.|...
T Consensus 269 LIeKeW~~fG-H~F~~R~~~~~~~~~~~~~~sPvFl~FLDcV~ql~~q~P~~FEFne~~L~~l~~~~~s~~fgtFl 343 (353)
T PF06602_consen 269 LIEKEWISFG-HPFADRCGHGSSSSSSSSERSPVFLQFLDCVWQLLRQFPTAFEFNESLLIFLADHSYSGRFGTFL 343 (353)
T ss_dssp HHHHHTTTTT---HHHHHTTT--SSTTGCC---HHHHHHHHHHHHHHHSTTT-SB-HHHHHHHHHHHCCTSSTTT-
T ss_pred HHHHHHHhcC-cchhhhcCCcccccccccccccchhHHHHHHHHHHHhCCCceecCHHHHHHHHHHHhcCCCCccc
Confidence 8777 3333 4444445544 56678999999999999999999999877654 2 223466666666544
No 8
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=97.73 E-value=8.3e-05 Score=61.35 Aligned_cols=56 Identities=38% Similarity=0.538 Sum_probs=44.1
Q ss_pred CCCCceEEEEeccEEEeCCCC--CCeeEEEEEeceEEEEEecCCCCce-EEEecccceeEEEEe
Q psy1514 24 LLPGEIIQGFAREVTYLCPYS--GPARGILSVTNYKLYFRSIDRETPY-VVEVPLGVVSRVEKV 84 (760)
Q Consensus 24 lLPGE~i~~~a~~V~~~~p~~--~~i~GtL~lTnyrLiF~~~~~~~~~-~~~IPL~~I~~Vek~ 84 (760)
|.++|.++.. |.|.+. .+..|+||||++||.|.+....... .+.||+..|.+|||.
T Consensus 2 l~~~E~l~~~-----~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~ 60 (61)
T smart00568 2 LPEEEKLIAD-----YSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKS 60 (61)
T ss_pred cCCCcEEEEE-----EEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEEC
Confidence 5688888764 555543 5799999999999999985444334 789999999999985
No 9
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=97.63 E-value=0.00025 Score=63.54 Aligned_cols=68 Identities=21% Similarity=0.202 Sum_probs=47.8
Q ss_pred CCCCCCCCCceEEEEeccEEEeCCCC---CCeeEEEEEeceEEEEEecCCCCceEEEecccceeEEEEecC
Q psy1514 19 PDDLPLLPGEIIQGFAREVTYLCPYS---GPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSRVEKVGG 86 (760)
Q Consensus 19 ~~~~~lLPGE~i~~~a~~V~~~~p~~---~~i~GtL~lTnyrLiF~~~~~~~~~~~~IPL~~I~~Vek~~~ 86 (760)
..++.|.|||.++..-++|.++.... .-..|+|++|+|||||..........+.|||..|.++|...+
T Consensus 5 s~~p~L~~~E~~~~~q~~V~LYdG~~K~~~~q~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~g 75 (89)
T PF11605_consen 5 SGRPVLEPNETIVYQQDGVGLYDGDQKTPNFQNGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAG 75 (89)
T ss_dssp CS-C---TT--EEEEEEEEEEEETTECSTT-SCEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-S
T ss_pred ccCcccCCCceEEEEecCeeeEcCCccCccccCCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEcc
Confidence 46788999999999999999876532 236899999999999997544333478999999999988764
No 10
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=97.62 E-value=0.00023 Score=60.20 Aligned_cols=58 Identities=28% Similarity=0.312 Sum_probs=38.7
Q ss_pred CCCCCCceEEEEeccEEEeCCCC---CCeeEEEEEeceEEEEEecCCCCce-EEEecccceeEEEEe
Q psy1514 22 LPLLPGEIIQGFAREVTYLCPYS---GPARGILSVTNYKLYFRSIDRETPY-VVEVPLGVVSRVEKV 84 (760)
Q Consensus 22 ~~lLPGE~i~~~a~~V~~~~p~~---~~i~GtL~lTnyrLiF~~~~~~~~~-~~~IPL~~I~~Vek~ 84 (760)
+.|.++|.++.. +.|.+. .+..|+||||++||.|.+....... .+.||+..|.+|||.
T Consensus 7 F~lp~~E~li~~-----~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~ 68 (69)
T PF02893_consen 7 FKLPEEERLIEE-----YSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKE 68 (69)
T ss_dssp ----TT--EEEE-----EEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE
T ss_pred ccCCCCCeEEEE-----EEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEe
Confidence 445667777654 445443 3799999999999999995444333 789999999999985
No 11
>PF12578 3-PAP: Myotubularin-associated protein; InterPro: IPR022587 The proteins in this entry are found in eukaryotes, and are typically between 115 and 138 amino acids in length. This entry contains myotubularin-associated protein 12 (also known as the phosphatidylinositol-3 phosphate 3-phosphatase adapter subunit, 3-PAP). 3-PAP is a catalytically inactive member of the myotubularin gene family, which coprecipitates lipid phosphatidylinositol 3-phosphate-3-phosphatase activity from lysates of human platelets [].
Probab=96.76 E-value=0.00081 Score=65.44 Aligned_cols=64 Identities=28% Similarity=0.452 Sum_probs=44.6
Q ss_pred cccccCCCCC-C--CCceeeccCcccCcccccccccccCCCCCCc----chHHHHHHHHHHHHHHHHHhHH
Q psy1514 626 LDLYKNPLYF-P--QLHVLEPIASMRHIKLWKGLYCRWNPSMRAQ----DPIYQRTRELLVLKEQLDKSSE 689 (760)
Q Consensus 626 ~~~f~Np~Y~-~--~~~~l~p~~~~~~~~lW~~~y~R~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~ 689 (760)
.++|.+..+. | ...+|.|.....+|+||.++|+||.|..... ..+..++.+++.+-++|+++++
T Consensus 59 ~~~~~~~~~~~P~d~~~lL~P~~~~~~i~lW~qcYlRW~P~a~i~~gg~~~~~~~~~~ll~ei~~l~~~l~ 129 (142)
T PF12578_consen 59 SEQFFRDWFSKPADSHGLLLPLLSGPQIKLWSQCYLRWIPEAQIRGGGPVQIELKLSELLDEIQELQRKLE 129 (142)
T ss_pred hHhhccccccCCcccccccccccccccHHHHHHHHHccCcHHHccCCCchHHHHHHHHhHHHHHHHHHHHH
Confidence 4567777664 2 2389999999999999999999999988543 2345556666665444444433
No 12
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=96.72 E-value=0.006 Score=54.22 Aligned_cols=59 Identities=27% Similarity=0.343 Sum_probs=46.3
Q ss_pred CcEEEEeCCCCCCCcchHHHHHHHHhhhhhHHHHhHHHHHHHhhhhcCccccccccCCCCCCCCCCCCcchhhHHHHHHH
Q psy1514 488 KTSVLVHCSDGWDRTAQLTALAMLLLDPYYRTIKGFEVLIEKEWLSFGHKFQQRIGHGDDKHSDADRSPVFLQLIDAVWQ 567 (760)
Q Consensus 488 ~~sVLVhcsdGwDrT~qvssLaql~LDPyyRTi~GF~~LIEKEW~sfGH~F~~R~gh~~~~~~~~e~sPiFlqFLDcV~Q 567 (760)
+.+|+|||++|.+||..++++..++......+ ....+++++.+
T Consensus 39 ~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~ 81 (105)
T smart00404 39 SGPVVVHCSAGVGRTGTFVALDILLQQLESET-------------------------------------GEVDIFQTVKE 81 (105)
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHHHhcC-------------------------------------CCCCHHHHHHH
Confidence 47999999999999999988877665554432 34567899999
Q ss_pred HHhhccCCCcCCHHHH
Q psy1514 568 VTTMFRHAFEFNEHFL 583 (760)
Q Consensus 568 l~~qfP~~FEFne~~L 583 (760)
+.+|.|.+++-.+.|.
T Consensus 82 ir~~r~~~~~~~~q~~ 97 (105)
T smart00404 82 LRKQRPGMVQTFEQYL 97 (105)
T ss_pred HHhhhhhhCCcHHHHH
Confidence 9999999998555554
No 13
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=96.72 E-value=0.006 Score=54.22 Aligned_cols=59 Identities=27% Similarity=0.343 Sum_probs=46.3
Q ss_pred CcEEEEeCCCCCCCcchHHHHHHHHhhhhhHHHHhHHHHHHHhhhhcCccccccccCCCCCCCCCCCCcchhhHHHHHHH
Q psy1514 488 KTSVLVHCSDGWDRTAQLTALAMLLLDPYYRTIKGFEVLIEKEWLSFGHKFQQRIGHGDDKHSDADRSPVFLQLIDAVWQ 567 (760)
Q Consensus 488 ~~sVLVhcsdGwDrT~qvssLaql~LDPyyRTi~GF~~LIEKEW~sfGH~F~~R~gh~~~~~~~~e~sPiFlqFLDcV~Q 567 (760)
+.+|+|||++|.+||..++++..++......+ ....+++++.+
T Consensus 39 ~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~ 81 (105)
T smart00012 39 SGPVVVHCSAGVGRTGTFVALDILLQQLESET-------------------------------------GEVDIFQTVKE 81 (105)
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHHHhcC-------------------------------------CCCCHHHHHHH
Confidence 47999999999999999988877665554432 34567899999
Q ss_pred HHhhccCCCcCCHHHH
Q psy1514 568 VTTMFRHAFEFNEHFL 583 (760)
Q Consensus 568 l~~qfP~~FEFne~~L 583 (760)
+.+|.|.+++-.+.|.
T Consensus 82 ir~~r~~~~~~~~q~~ 97 (105)
T smart00012 82 LRKQRPGMVQTFEQYL 97 (105)
T ss_pred HHhhhhhhCCcHHHHH
Confidence 9999999998555554
No 14
>KOG3294|consensus
Probab=96.65 E-value=0.0024 Score=66.05 Aligned_cols=63 Identities=21% Similarity=0.300 Sum_probs=48.8
Q ss_pred CCCCCCCceEEEEeccEEEeCC--------CCCCeeEEEEEeceEEEEEecC-CCCceEEEecccceeEEEE
Q psy1514 21 DLPLLPGEIIQGFAREVTYLCP--------YSGPARGILSVTNYKLYFRSID-RETPYVVEVPLGVVSRVEK 83 (760)
Q Consensus 21 ~~~lLPGE~i~~~a~~V~~~~p--------~~~~i~GtL~lTnyrLiF~~~~-~~~~~~~~IPL~~I~~Vek 83 (760)
.+-++-||.++...++|.+... +++...||||||||||||.+.. .|.-..+.+|+-.+..++-
T Consensus 13 gvl~~n~E~i~~~~dgVeltf~~~~~~~~~~~g~kkGtlyLTs~RiIFis~~~~D~fksF~MPf~~mkd~kl 84 (261)
T KOG3294|consen 13 GVLLYNGESILLVYDGVELTFDKMPNVSEAFKGTKKGTLYLTSHRIIFISSKPKDAFKSFMMPFNLMKDVKL 84 (261)
T ss_pred eeEecCCcEEEEeeCCeEEEeeccCCCccccccceeeeEEeecceEEEecCCCCcchhhhcchhhhhhhcee
Confidence 3678899999999899887432 3467899999999999999876 3433467888888877663
No 15
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=96.46 E-value=0.011 Score=64.70 Aligned_cols=65 Identities=23% Similarity=0.284 Sum_probs=54.9
Q ss_pred CCCCCCCCCceEEEEeccEEEeCCCCCCeeEEEEEeceEEEEEecCCCCceEEEecccceeEEEEec
Q psy1514 19 PDDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSRVEKVG 85 (760)
Q Consensus 19 ~~~~~lLPGE~i~~~a~~V~~~~p~~~~i~GtL~lTnyrLiF~~~~~~~~~~~~IPL~~I~~Vek~~ 85 (760)
...+.|||+|++....++|--++...|.+ ||+++||.|+++-+.-.+ .+.+.||.-.|.+|....
T Consensus 146 ~~~L~lLp~E~v~~~~~gVwnls~dqGnL-GtfivTNvRiVW~A~~ne-~fNVSiPylqi~~i~ir~ 210 (339)
T PF07289_consen 146 DGQLKLLPQEQVYSRVNGVWNLSSDQGNL-GTFIVTNVRIVWFADMNE-SFNVSIPYLQIKSIRIRD 210 (339)
T ss_pred CCeEeeCCccEEeeccCCEEEcccCCCce-eEEEEeeeEEEEEccCCc-cccccchHhhheeeeeec
Confidence 46788999999999999998877766666 999999999999875443 488999999999998754
No 16
>KOG1090|consensus
Probab=96.09 E-value=0.006 Score=73.16 Aligned_cols=115 Identities=23% Similarity=0.323 Sum_probs=91.5
Q ss_pred HHHHHHHHHhcCCCCccccccccCCchhhHHHHHHHHhhhHHHHHHhhccCceeEEecCCCCCccccccccccccccCch
Q psy1514 385 RESQRKLKELCFPQIDEARWFSGVDSTYWLKHIKCILAGACRIVDKVENHKTSVLVHCSDGWDRTAQIDEARWFSGVDST 464 (760)
Q Consensus 385 r~S~~kl~~~~~~~~~~s~wls~l~~s~Wl~~i~~il~ga~~i~~~v~~~~~svlvHcSdGwDrt~qls~~~~~~~l~~~ 464 (760)
+.||.++.+ ++.|+..+. .+++-+..+|+.++-.++||++..-||||-|.|+++++.. ..|++
T Consensus 1242 ~~SFl~s~e-------~S~WlqqIs---------kllqlS~~VV~Lldl~~SSV~v~LEdG~dITtqlsSl~QL-lsDPy 1304 (1732)
T KOG1090|consen 1242 PASFLESLE-------DSEWLQQIS---------KLLQLSVLVVELLDLSNSSVLVGLEDGWDITTQLSSLSQL-LSDPY 1304 (1732)
T ss_pred HHHHHHHHh-------hcchHHHHH---------HHHhhhhhhhhhhhccCCeEEEEeccCchhhhhhhhhhhh-cCChh
Confidence 568877665 579999885 5778888999999999999999999999999999998876 56777
Q ss_pred hHHHHHHHHHHHHHHHHHH--HhcCCcEEEEeCCCCCCCcchHHHHHHHHhhhhhHHHHhHHHHHHHh
Q psy1514 465 YWLKHIKCILAGACRIVDK--VENHKTSVLVHCSDGWDRTAQLTALAMLLLDPYYRTIKGFEVLIEKE 530 (760)
Q Consensus 465 ~Wl~~i~~iL~~a~~ia~~--l~~~~~sVLVhcsdGwDrT~qvssLaql~LDPyyRTi~GF~~LIEKE 530 (760)
| ..|+|...+|++ +..|+ -. |=+ |.-.++.+..+||++|+--.+|+.-+|..
T Consensus 1305 Y------RtldGFrvLVEKEWLaFGH-rF--Hr~-----~~~fsPsFlqFLDcVhQi~~QfPmaFEFs 1358 (1732)
T KOG1090|consen 1305 Y------RTLDGFRVLVEKEWLAFGH-RF--HRD-----TETFSPSFLQFLDCVHQISQQFPMAFEFS 1358 (1732)
T ss_pred h------hcccchhhhhhhhhhhhcc-hh--ccc-----ccccCchHHHHHHHHHHHHHhccchhhhH
Confidence 7 478888888876 44442 11 322 34566788899999999999999877766
No 17
>PF14470 bPH_3: Bacterial PH domain
Probab=95.99 E-value=0.098 Score=46.46 Aligned_cols=79 Identities=19% Similarity=0.128 Sum_probs=56.0
Q ss_pred CCCCceEEEEeccEEEeCCCCCCeeEEEEEeceEEEEEecCC-CCceEEEecccceeEEEEecCccCCCCCcccEEEEec
Q psy1514 24 LLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDR-ETPYVVEVPLGVVSRVEKVGGQLSRGENSYGIELFCK 102 (760)
Q Consensus 24 lLPGE~i~~~a~~V~~~~p~~~~i~GtL~lTnyrLiF~~~~~-~~~~~~~IPL~~I~~Vek~~~~~s~g~~~~~L~I~CK 102 (760)
|-|||.|...+....-.. .....|.|++||=||+|..... .......||+..|.+|+...+. -...|.|.+
T Consensus 1 L~~~E~I~~~~~~~~~~~--~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~-----~~~~i~i~~- 72 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYNYF--FTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGI-----LGGKITIET- 72 (96)
T ss_pred CcCCCEEEEEEEEEEeec--ccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccc-----cccEEEEEE-
Confidence 579999998765542211 3467899999999999997642 1234679999999999976432 223588888
Q ss_pred CccEEEEe
Q psy1514 103 DMRNLRFG 110 (760)
Q Consensus 103 DfR~l~f~ 110 (760)
+-..++|.
T Consensus 73 ~~~~~~i~ 80 (96)
T PF14470_consen 73 NGEKIKID 80 (96)
T ss_pred CCEEEEEE
Confidence 56666664
No 18
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=95.92 E-value=0.048 Score=44.61 Aligned_cols=53 Identities=21% Similarity=0.207 Sum_probs=40.0
Q ss_pred ceEEEEeccEEEeCCCCCCeeEEEEEeceEEEEEecCCCCceEEEecccceeEEE
Q psy1514 28 EIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSRVE 82 (760)
Q Consensus 28 E~i~~~a~~V~~~~p~~~~i~GtL~lTnyrLiF~~~~~~~~~~~~IPL~~I~~Ve 82 (760)
|.++...++|-=.....| ..|+|++||-|+++.+... ..+.+.||..+|..+.
T Consensus 1 E~v~~~~~~Ved~kgn~G-~~G~l~VTNlRiiW~s~~~-~~~NlSIgy~~i~~i~ 53 (55)
T smart00683 1 ERVLTRINGVEDTKGNNG-DLGVFFVTNLRLVWHSDTN-PRFNISVGYLQITNVR 53 (55)
T ss_pred CEEEeeecCeEecCCCCC-CeeEEEEEeeEEEEEeCCC-CceEEEEcceeEEEEE
Confidence 667777677654433334 5699999999999998654 3478999999998875
No 19
>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins.; PDB: 3DCX_E 3HSA_C 3B77_D.
Probab=95.35 E-value=0.21 Score=47.60 Aligned_cols=96 Identities=16% Similarity=0.225 Sum_probs=61.9
Q ss_pred CCCCCCCCceEEEEeccEEEeCCCCCCeeEEEEEeceEEEEEecCCC---CceEEEecccceeEEEEecCccCCCCCccc
Q psy1514 20 DDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRE---TPYVVEVPLGVVSRVEKVGGQLSRGENSYG 96 (760)
Q Consensus 20 ~~~~lLPGE~i~~~a~~V~~~~p~~~~i~GtL~lTnyrLiF~~~~~~---~~~~~~IPL~~I~~Vek~~~~~s~g~~~~~ 96 (760)
...-|+|||+|+.. | ..+...++.||.|||+.....- +.....||+..|..+.--... ..+....
T Consensus 23 ~~~~L~~gE~I~~a-----y-----k~iRD~~vFTnkRlI~vD~QG~TGkK~~~~siPY~~I~~~siETAG--~~DlD~E 90 (124)
T PF08000_consen 23 YEPLLLDGEEIEAA-----Y-----KLIRDEIVFTNKRLILVDKQGITGKKVEYKSIPYSSITHFSIETAG--TFDLDSE 90 (124)
T ss_dssp HGGGSSTT--EEEE-----E-----EESSEEEEEESSEEEEEEEESSSSSEEEEEEEEGGGEEEEEEEECS--STTSEEE
T ss_pred HHHhcCCCCeeeee-----e-----hhhceeEEEecChheEEecccCccceEEEEEEehhhccEEEEEeCC--cccCccc
Confidence 35668999999764 2 1357899999999999975432 234669999999887654311 1223345
Q ss_pred EEEEecCcc-EEEEeeccCCccccchhhhhccccccccchHHHHHHHHHh
Q psy1514 97 IELFCKDMR-NLRFGHKQENHSRRNVFEKRFGHKQENHSRRNVFEKLQQY 145 (760)
Q Consensus 97 L~I~CKDfR-~l~f~f~~e~~~~~~vf~~~~~~~q~~~~~~~v~~~L~~l 145 (760)
|.|+-..-. .+.+.|....+ ..+++..|.++
T Consensus 91 lki~i~~~~~~i~~~f~k~~d------------------i~~i~k~L~~~ 122 (124)
T PF08000_consen 91 LKIWISGQGFPIEFEFKKKTD------------------IYEIYKALAEY 122 (124)
T ss_dssp EEEEETTESSEEEEEEGTTSH------------------HHHHHHHHHHH
T ss_pred EEEEECCCcEEEEEecCCCCC------------------HHHHHHHHHHH
Confidence 777776655 35677876442 36777777654
No 20
>KOG2774|consensus
Probab=94.29 E-value=0.024 Score=59.04 Aligned_cols=31 Identities=23% Similarity=0.472 Sum_probs=28.9
Q ss_pred CCceeEEeecccccccchhhHHHHhhhccCCC
Q psy1514 710 KNSRIVGFERTTGQIIRGMSQRIESQNAKNCE 741 (760)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (760)
..|+|+ |+|++||+|+|++..||++||+.|-
T Consensus 43 ~~PrvL-ITG~LGQLG~~~A~LLR~~yGs~~V 73 (366)
T KOG2774|consen 43 KAPRVL-ITGSLGQLGRGLASLLRYMYGSECV 73 (366)
T ss_pred CCCeEE-EecchHHHhHHHHHHHHHHhCCccE
Confidence 567999 9999999999999999999999985
No 21
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=94.09 E-value=0.25 Score=54.28 Aligned_cols=89 Identities=26% Similarity=0.360 Sum_probs=61.1
Q ss_pred CCCCCCCCceEEEEeccEEEeCCCCCCeeEEEEEeceEEEEEecCCCCceEEEecccceeEEEEecCccC-CCCCcccEE
Q psy1514 20 DDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSRVEKVGGQLS-RGENSYGIE 98 (760)
Q Consensus 20 ~~~~lLPGE~i~~~a~~V~~~~p~~~~i~GtL~lTnyrLiF~~~~~~~~~~~~IPL~~I~~Vek~~~~~s-~g~~~~~L~ 98 (760)
..+.+-|||.++...++|-=.-. +....|+|+|||-||++.+... ....+.|-+.+|..+......+. +| ....|.
T Consensus 15 ~~l~lr~GE~~i~~~~~VEDtKG-N~G~~G~l~vTNLR~iW~s~~~-~r~NlSIG~~~i~~i~~~~~~sklrg-~teaL~ 91 (339)
T PF07289_consen 15 SQLKLRPGEFIIDRLDPVEDTKG-NNGDRGRLVVTNLRLIWHSLKR-PRINLSIGYNCITNISTKTVNSKLRG-NTEALY 91 (339)
T ss_pred hhcccccceEEEEeeeceeeccC-CCCCeeEEEEEeeeeEEeccCC-CceeEEeeceeEEEEEEEEeeccccC-ceeEEE
Confidence 34567899999988776643222 2347899999999999998643 34689999999999987643222 33 345677
Q ss_pred EEecCccEEEEeec
Q psy1514 99 LFCKDMRNLRFGHK 112 (760)
Q Consensus 99 I~CKDfR~l~f~f~ 112 (760)
|.+| +..-+|.|-
T Consensus 92 i~~k-~~~~rfEFi 104 (339)
T PF07289_consen 92 ILAK-FNNTRFEFI 104 (339)
T ss_pred Eeee-cCCceEEEE
Confidence 7777 444444443
No 22
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=93.66 E-value=0.074 Score=52.53 Aligned_cols=26 Identities=46% Similarity=0.717 Sum_probs=21.6
Q ss_pred cEEEEeCCCCCCCcchHHHHHHHHhh
Q psy1514 489 TSVLVHCSDGWDRTAQLTALAMLLLD 514 (760)
Q Consensus 489 ~sVLVhcsdGwDrT~qvssLaql~LD 514 (760)
.+||+||+-|-|||..+++|.+.+|.
T Consensus 125 ~p~l~HC~aGKDRTG~~~alll~~lG 150 (164)
T PF13350_consen 125 GPVLFHCTAGKDRTGVVAALLLSLLG 150 (164)
T ss_dssp --EEEE-SSSSSHHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCccHHHHHHHHHHHcC
Confidence 59999999999999999999988775
No 23
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=93.16 E-value=0.086 Score=52.58 Aligned_cols=46 Identities=28% Similarity=0.546 Sum_probs=33.1
Q ss_pred HhcCCcEEEEeCCCCCCCcchHHHHHHHHhhhhhHHHHhHH-HHHHHhhhhcCcc
Q psy1514 484 VENHKTSVLVHCSDGWDRTAQLTALAMLLLDPYYRTIKGFE-VLIEKEWLSFGHK 537 (760)
Q Consensus 484 l~~~~~sVLVhcsdGwDrT~qvssLaql~LDPyyRTi~GF~-~LIEKEW~sfGH~ 537 (760)
++....+|||||.+|-|||..|++. ||-++|.- .-|-.|+..|+.+
T Consensus 87 ld~~n~PvLiHC~~G~~rTG~vvg~--------lRk~Q~W~~~~i~~Ey~~f~~~ 133 (164)
T PF03162_consen 87 LDPRNYPVLIHCNHGKDRTGLVVGC--------LRKLQGWSLSSIFDEYRRFAGP 133 (164)
T ss_dssp H-GGG-SEEEE-SSSSSHHHHHHHH--------HHHHTTB-HHHHHHHHHHHHGG
T ss_pred hCCCCCCEEEEeCCCCcchhhHHHH--------HHHHcCCCHHHHHHHHHHhcCC
Confidence 4445589999999999999988876 78888863 3577788776654
No 24
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=92.40 E-value=0.25 Score=45.22 Aligned_cols=70 Identities=23% Similarity=0.329 Sum_probs=47.8
Q ss_pred EeCCCCCCeeEEEEEeceEEEEEec---------------CCCCceEEEecccceeEEEEecCccCCCCCcccEEEEecC
Q psy1514 39 YLCPYSGPARGILSVTNYKLYFRSI---------------DRETPYVVEVPLGVVSRVEKVGGQLSRGENSYGIELFCKD 103 (760)
Q Consensus 39 ~~~p~~~~i~GtL~lTnyrLiF~~~---------------~~~~~~~~~IPL~~I~~Vek~~~~~s~g~~~~~L~I~CKD 103 (760)
++.|. +...|+|.||+.+|+|.+. ....+....+|+..|..|.+..-. -...+|+|..+|
T Consensus 10 ~I~~~-~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyl----lr~~AlEiF~~d 84 (106)
T PF14844_consen 10 LITPL-DSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYL----LRDTALEIFFSD 84 (106)
T ss_dssp EEETT-EEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEET----TEEEEEEEEETT
T ss_pred EEEee-eeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhc----CcceEEEEEEcC
Confidence 33343 5689999999999999976 111233567899999999987521 112479999999
Q ss_pred ccEEEEeecc
Q psy1514 104 MRNLRFGHKQ 113 (760)
Q Consensus 104 fR~l~f~f~~ 113 (760)
-+.+=|.|.+
T Consensus 85 g~s~f~~F~~ 94 (106)
T PF14844_consen 85 GRSYFFNFES 94 (106)
T ss_dssp S-EEEEE-SS
T ss_pred CcEEEEEcCC
Confidence 9999999975
No 25
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=91.95 E-value=0.27 Score=46.32 Aligned_cols=34 Identities=32% Similarity=0.534 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCCcEEEEeCCCCCCCcchHHH
Q psy1514 474 LAGACRIVDKVENHKTSVLVHCSDGWDRTAQLTA 507 (760)
Q Consensus 474 L~~a~~ia~~l~~~~~sVLVhcsdGwDrT~qvss 507 (760)
+..+...++.....+.+|+|||.+|.+||..+++
T Consensus 67 ~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~ 100 (139)
T cd00127 67 FDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVI 100 (139)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHH
Confidence 3444444444444457999999999999997765
No 26
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=91.61 E-value=0.31 Score=46.28 Aligned_cols=36 Identities=31% Similarity=0.525 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeCCCCCCCcchHHHH
Q psy1514 473 ILAGACRIVDKVENHKTSVLVHCSDGWDRTAQLTAL 508 (760)
Q Consensus 473 iL~~a~~ia~~l~~~~~sVLVhcsdGwDrT~qvssL 508 (760)
.+..+...++.....+.+|||||..|.+||..+++.
T Consensus 63 ~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~ 98 (138)
T smart00195 63 YFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIA 98 (138)
T ss_pred HHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHH
Confidence 445555555555566689999999999999987753
No 27
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=88.73 E-value=0.52 Score=44.27 Aligned_cols=35 Identities=29% Similarity=0.518 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCCcEEEEeCCCCCCCcchHHHH
Q psy1514 474 LAGACRIVDKVENHKTSVLVHCSDGWDRTAQLTAL 508 (760)
Q Consensus 474 L~~a~~ia~~l~~~~~sVLVhcsdGwDrT~qvssL 508 (760)
+..++..++.....+..|||||..|-+||+-+++.
T Consensus 59 ~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~a 93 (133)
T PF00782_consen 59 LDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHH
T ss_pred HHHHHHhhhhhhcccceeEEEeCCCcccchHHHHH
Confidence 34444444444455589999999999999877654
No 28
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=88.73 E-value=0.75 Score=48.95 Aligned_cols=42 Identities=31% Similarity=0.467 Sum_probs=33.5
Q ss_pred CcEEEEeCCCCCCCcchHHHHHHHHhhhhhHHHHhHHHHHHHhhhhcCc
Q psy1514 488 KTSVLVHCSDGWDRTAQLTALAMLLLDPYYRTIKGFEVLIEKEWLSFGH 536 (760)
Q Consensus 488 ~~sVLVhcsdGwDrT~qvssLaql~LDPyyRTi~GF~~LIEKEW~sfGH 536 (760)
+-+||+||+.|-|||..+++|.--++++..++ |-.|++.+++
T Consensus 136 ~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~-------v~~dyl~~~~ 177 (249)
T COG2365 136 NGPVLIHCTAGKDRTGLVAALYRKLVGGSDET-------VAADYLLTNR 177 (249)
T ss_pred cCCEEEecCCCCcchHHHHHHHHHHhCCchhH-------HHHHHHHcCC
Confidence 48999999999999999999987777777775 4445555443
No 29
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=85.57 E-value=0.84 Score=42.47 Aligned_cols=66 Identities=17% Similarity=0.242 Sum_probs=42.1
Q ss_pred CCeeEEEEEeceEEEEEecCCCCc------e--------EEEecccceeEEEEecCccCCCCCcccEEEEecCccEEEEe
Q psy1514 45 GPARGILSVTNYKLYFRSIDRETP------Y--------VVEVPLGVVSRVEKVGGQLSRGENSYGIELFCKDMRNLRFG 110 (760)
Q Consensus 45 ~~i~GtL~lTnyrLiF~~~~~~~~------~--------~~~IPL~~I~~Vek~~~~~s~g~~~~~L~I~CKDfR~l~f~ 110 (760)
.-+.|+|.||+.+|+|...+++.. . ..-.|+..|..|.+..- .-...+|+|.|.|-..+-|.
T Consensus 16 ~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRy----lLr~~alEiF~~d~~~~f~~ 91 (108)
T cd01201 16 VVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRY----LLQNTALELFLASRTSIFFA 91 (108)
T ss_pred EEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhh----hcccceEEEEEeCCceEEEE
Confidence 357899999999999997533211 0 11344444444443321 11234799999998888899
Q ss_pred eccC
Q psy1514 111 HKQE 114 (760)
Q Consensus 111 f~~e 114 (760)
|.+.
T Consensus 92 F~~~ 95 (108)
T cd01201 92 FPDQ 95 (108)
T ss_pred eCcH
Confidence 9853
No 30
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=83.08 E-value=1.9 Score=44.60 Aligned_cols=24 Identities=33% Similarity=0.643 Sum_probs=20.5
Q ss_pred CCcEEEEeCCCCCCCcchHHHHHH
Q psy1514 487 HKTSVLVHCSDGWDRTAQLTALAM 510 (760)
Q Consensus 487 ~~~sVLVhcsdGwDrT~qvssLaq 510 (760)
.+.+|+|||.+|-.||..++++..
T Consensus 165 ~~~pivVHC~~G~gRsg~~~a~~~ 188 (231)
T cd00047 165 GSGPIVVHCSAGVGRTGTFIAIDI 188 (231)
T ss_pred CCCCeEEECCCCCCccchHHHHHH
Confidence 357999999999999999987643
No 31
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=82.16 E-value=2 Score=45.33 Aligned_cols=64 Identities=23% Similarity=0.413 Sum_probs=42.1
Q ss_pred CcEEEEeCCCCCCCcchHHHHHHHHhhhhhHHHHhHHHHHHHhhhhcCccccccccCCCCCCCCCCCCcchhhHHHHHHH
Q psy1514 488 KTSVLVHCSDGWDRTAQLTALAMLLLDPYYRTIKGFEVLIEKEWLSFGHKFQQRIGHGDDKHSDADRSPVFLQLIDAVWQ 567 (760)
Q Consensus 488 ~~sVLVhcsdGwDrT~qvssLaql~LDPyyRTi~GF~~LIEKEW~sfGH~F~~R~gh~~~~~~~~e~sPiFlqFLDcV~Q 567 (760)
+.+|+|||++|-.||..++++..++ + . +++ + + -+-+.+.|-+
T Consensus 193 ~~pivVHC~~G~gRsg~f~a~~~~~-~-------~----l~~-----~-------~--------------~v~v~~~v~~ 234 (258)
T smart00194 193 TGPIVVHCSAGVGRTGTFIAIDILL-Q-------Q----LEA-----G-------K--------------EVDIFEIVKE 234 (258)
T ss_pred CCCEEEEeCCCCCccchhhHHHHHH-H-------H----HHH-----c-------C--------------CCCHHHHHHH
Confidence 4799999999999999998775543 1 0 000 0 0 0234677778
Q ss_pred HHhhccCCCcCCHHHHHHHHHhh
Q psy1514 568 VTTMFRHAFEFNEHFLITILDHL 590 (760)
Q Consensus 568 l~~qfP~~FEFne~~L~~l~~h~ 590 (760)
|.+|-|.+++ +..-+.++.+.+
T Consensus 235 lR~~R~~~v~-~~~Qy~f~~~~l 256 (258)
T smart00194 235 LRSQRPGMVQ-TEEQYIFLYRAI 256 (258)
T ss_pred HHhccccccC-CHHHHHHHHHHH
Confidence 8888888885 665555555443
No 32
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=80.61 E-value=2.1 Score=43.64 Aligned_cols=27 Identities=33% Similarity=0.745 Sum_probs=22.2
Q ss_pred hcCCcEEEEeCCCCCCCcchHHHHHHH
Q psy1514 485 ENHKTSVLVHCSDGWDRTAQLTALAML 511 (760)
Q Consensus 485 ~~~~~sVLVhcsdGwDrT~qvssLaql 511 (760)
.....+|+|||++|-.||..++++..+
T Consensus 167 ~~~~~pivVhc~~G~gRsg~f~~~~~~ 193 (235)
T PF00102_consen 167 DDPNGPIVVHCSDGVGRSGTFCAIDIL 193 (235)
T ss_dssp STTSSEEEEESSSSSHHHHHHHHHHHH
T ss_pred cCCccceEeecccccccccccccchhh
Confidence 455689999999999999998876543
No 33
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=79.54 E-value=2.7 Score=44.49 Aligned_cols=24 Identities=29% Similarity=0.614 Sum_probs=20.1
Q ss_pred cCCcEEEEeCCCCCCCcchHHHHH
Q psy1514 486 NHKTSVLVHCSDGWDRTAQLTALA 509 (760)
Q Consensus 486 ~~~~sVLVhcsdGwDrT~qvssLa 509 (760)
..|..|+|||..|-.||.-+++..
T Consensus 168 ~~g~~VaVHC~AGlGRTGtl~Aay 191 (241)
T PTZ00393 168 KNNRAVAVHCVAGLGRAPVLASIV 191 (241)
T ss_pred hcCCeEEEECCCCCCHHHHHHHHH
Confidence 445799999999999999887664
No 34
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=79.43 E-value=3.4 Score=41.23 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=19.8
Q ss_pred CCcEEEEeCCCCCCCcchHHHHH
Q psy1514 487 HKTSVLVHCSDGWDRTAQLTALA 509 (760)
Q Consensus 487 ~~~sVLVhcsdGwDrT~qvssLa 509 (760)
.+.+|+|||..|-.||.-+++..
T Consensus 97 ~g~~V~VHC~aGigRSgt~~a~y 119 (166)
T PTZ00242 97 PPETIAVHCVAGLGRAPILVALA 119 (166)
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999887663
No 35
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=79.01 E-value=3.3 Score=45.34 Aligned_cols=22 Identities=18% Similarity=0.508 Sum_probs=19.7
Q ss_pred CcEEEEeCCCCCCCcchHHHHH
Q psy1514 488 KTSVLVHCSDGWDRTAQLTALA 509 (760)
Q Consensus 488 ~~sVLVhcsdGwDrT~qvssLa 509 (760)
..|++||||+|-.||...|+|-
T Consensus 221 ~~PIVVHCSaGvGRTGtFcaiD 242 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVFD 242 (298)
T ss_pred CCCEEEECCCCCchhHHHHHHH
Confidence 4699999999999999998775
No 36
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=78.15 E-value=3.6 Score=45.48 Aligned_cols=62 Identities=23% Similarity=0.368 Sum_probs=40.8
Q ss_pred cEEEEeCCCCCCCcchHHHHHHHHhhhhhHHHHhHHHHHHHhhhhcCccccccccCCCCCCCCCCCCcchhhHHHHHHHH
Q psy1514 489 TSVLVHCSDGWDRTAQLTALAMLLLDPYYRTIKGFEVLIEKEWLSFGHKFQQRIGHGDDKHSDADRSPVFLQLIDAVWQV 568 (760)
Q Consensus 489 ~sVLVhcsdGwDrT~qvssLaql~LDPyyRTi~GF~~LIEKEW~sfGH~F~~R~gh~~~~~~~~e~sPiFlqFLDcV~Ql 568 (760)
.|++||||+|-.||..+|+|-.+ ++= ++++ + . +-..++|.+|
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~-l~~-----------l~~~-----~-------------------~--vdv~~~V~~l 289 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNA-LEQ-----------LEKE-----K-------------------E--VCLGEIVLKI 289 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHH-HHH-----------HHhc-----C-------------------C--CCHHHHHHHH
Confidence 69999999999999998876433 221 1110 0 0 1246789999
Q ss_pred HhhccCCCcCCHHHHHHHHHh
Q psy1514 569 TTMFRHAFEFNEHFLITILDH 589 (760)
Q Consensus 569 ~~qfP~~FEFne~~L~~l~~h 589 (760)
.+|-|..++=-+.|. ++.+.
T Consensus 290 R~qR~~~Vqt~~QY~-F~y~~ 309 (323)
T PHA02746 290 RKQRHSSVFLPEQYA-FCYKA 309 (323)
T ss_pred HhcccccCCCHHHHH-HHHHH
Confidence 999999987544443 44443
No 37
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=75.46 E-value=2 Score=47.04 Aligned_cols=22 Identities=41% Similarity=0.841 Sum_probs=19.8
Q ss_pred cEEEEeCCCCCCCcchHHHHHH
Q psy1514 489 TSVLVHCSDGWDRTAQLTALAM 510 (760)
Q Consensus 489 ~sVLVhcsdGwDrT~qvssLaq 510 (760)
.||+||||+|-.||..+|+|-.
T Consensus 230 ~PIvVHCsaGvGRTGtF~aid~ 251 (303)
T PHA02742 230 PPILVHCSAGLDRAGAFCAIDI 251 (303)
T ss_pred CCeEEECCCCCchhHHHHHHHH
Confidence 6999999999999999998753
No 38
>PHA02738 hypothetical protein; Provisional
Probab=74.65 E-value=4.8 Score=44.40 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=20.0
Q ss_pred cEEEEeCCCCCCCcchHHHHHHH
Q psy1514 489 TSVLVHCSDGWDRTAQLTALAML 511 (760)
Q Consensus 489 ~sVLVhcsdGwDrT~qvssLaql 511 (760)
.|++||||+|-.||...|+|--+
T Consensus 228 ~PIVVHCs~GiGRtGtFcaidi~ 250 (320)
T PHA02738 228 PPIVVHCNAGLGRTPCYCVVDIS 250 (320)
T ss_pred CCeEEEcCCCCChhhhhhHHHHH
Confidence 59999999999999998877543
No 39
>KOG2059|consensus
Probab=73.45 E-value=4.6 Score=48.29 Aligned_cols=96 Identities=17% Similarity=0.254 Sum_probs=64.0
Q ss_pred EEEEeceEEEEEecCCCCceEEEecccceeEEEEecCccCCCCCcccEEEEecCccEEEEeeccCCccccchhhhhcccc
Q psy1514 50 ILSVTNYKLYFRSIDRETPYVVEVPLGVVSRVEKVGGQLSRGENSYGIELFCKDMRNLRFGHKQENHSRRNVFEKRFGHK 129 (760)
Q Consensus 50 tL~lTnyrLiF~~~~~~~~~~~~IPL~~I~~Vek~~~~~s~g~~~~~L~I~CKDfR~l~f~f~~e~~~~~~vf~~~~~~~ 129 (760)
-..+||++|+|.......+ ...|||.+|-.|||+--.+-. ....++|.|-| |.+.|..+.-..
T Consensus 590 yf~LT~~~Ls~~Ksp~~q~-~~~Ipl~nI~avEklee~sF~--~knv~qVV~~d-rtly~Q~~n~vE------------- 652 (800)
T KOG2059|consen 590 YFRLTTEELSYAKSPGKQP-IYTIPLSNIRAVEKLEEKSFK--MKNVFQVVHTD-RTLYVQAKNCVE------------- 652 (800)
T ss_pred EEEeccceeEEecCCccCc-ccceeHHHHHHHHHhhhhccC--CCceEEEEecC-cceeEecCCchH-------------
Confidence 4689999999986555443 679999999999987532222 23468999999 877776654322
Q ss_pred ccccchHHHHHHHHHhhcCCCCCCcccccccCCCCCCCCcc
Q psy1514 130 QENHSRRNVFEKLQQYAFPLSHKLPIFAFEYTETFPENGWN 170 (760)
Q Consensus 130 q~~~~~~~v~~~L~~la~p~s~~~~lFAF~y~~~~~~~gW~ 170 (760)
..++++.|.+-+....+ .-|+.....|..+.|.
T Consensus 653 -----andWldaL~kvs~~N~~---rLas~HPgaF~s~~ws 685 (800)
T KOG2059|consen 653 -----ANDWLDALRKVSCCNQN---RLASYHPGAFRSDSWS 685 (800)
T ss_pred -----HHHHHHHHHHHhccCcc---hhhhcCCcccccCccc
Confidence 36777878776665443 3355444455555563
No 40
>KOG0793|consensus
Probab=73.07 E-value=3 Score=49.60 Aligned_cols=45 Identities=24% Similarity=0.422 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCcchHHHHHHHH
Q psy1514 468 KHIKCILAGACRIVDKVENHKTSVLVHCSDGWDRTAQLTALAMLL 512 (760)
Q Consensus 468 ~~i~~iL~~a~~ia~~l~~~~~sVLVhcsdGwDrT~qvssLaql~ 512 (760)
..-+.+|+.--++-++-....++|+||||||-.||...+.+=+++
T Consensus 907 asarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl 951 (1004)
T KOG0793|consen 907 ASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVL 951 (1004)
T ss_pred cchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHH
Confidence 345678888888888877667999999999999998877555443
No 41
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=72.72 E-value=2.6 Score=46.33 Aligned_cols=23 Identities=35% Similarity=0.680 Sum_probs=20.1
Q ss_pred cEEEEeCCCCCCCcchHHHHHHH
Q psy1514 489 TSVLVHCSDGWDRTAQLTALAML 511 (760)
Q Consensus 489 ~sVLVhcsdGwDrT~qvssLaql 511 (760)
.|++||||+|-.||...|++-..
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~ 252 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDIC 252 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHH
Confidence 59999999999999999987543
No 42
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=72.56 E-value=3.3 Score=44.30 Aligned_cols=30 Identities=40% Similarity=0.661 Sum_probs=26.2
Q ss_pred CCcEEEEeCCCCCCCcchHHHHHHHHhhhh
Q psy1514 487 HKTSVLVHCSDGWDRTAQLTALAMLLLDPY 516 (760)
Q Consensus 487 ~~~sVLVhcsdGwDrT~qvssLaql~LDPy 516 (760)
+..+++||||-|-.||.-..+|-+|+-+|-
T Consensus 217 ~t~piiVHCSAGvGRTGTFIalD~ll~~~~ 246 (302)
T COG5599 217 RTGPIIVHCSAGVGRTGTFIALDILLRMPN 246 (302)
T ss_pred CCCCEEEEeccCCCCcceeeeHHHHHhccc
Confidence 568999999999999999999988887663
No 43
>KOG2433|consensus
Probab=70.34 E-value=4.4 Score=45.42 Aligned_cols=60 Identities=22% Similarity=0.416 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeCC------CCC---CCcchHHHHHHHHhhhhhHHHHhHHHHHHHhhhhcC
Q psy1514 473 ILAGACRIVDKVENHKTSVLVHCS------DGW---DRTAQLTALAMLLLDPYYRTIKGFEVLIEKEWLSFG 535 (760)
Q Consensus 473 iL~~a~~ia~~l~~~~~sVLVhcs------dGw---DrT~qvssLaql~LDPyyRTi~GF~~LIEKEW~sfG 535 (760)
+-.-+..+|.+.+..|++|+|-+. =|- |-|.|+- -|+|||+|---+-..+.-+|-||.+-
T Consensus 487 va~~~rELA~HFqt~GTPVMIGGgvLAHTIlGVd~n~~TGq~K---FLILDPHYTGaeDl~tI~~KGWCgWK 555 (577)
T KOG2433|consen 487 VAERVRELARHFQTSGTPVMIGGGVLAHTILGVDFNDTTGQTK---FLILDPHYTGAEDLKTITSKGWCGWK 555 (577)
T ss_pred HHHHHHHHHHHhhccCCcEEEccceeeeeEeeeeeecccCceE---EEEeCCCcCChhhHHHHhhccccccc
Confidence 556677888999988999988554 233 4566654 36899999999999999999999874
No 44
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=67.23 E-value=5.9 Score=37.14 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=18.5
Q ss_pred hhccCceeEEecCCCCCcccccc
Q psy1514 431 VENHKTSVLVHCSDGWDRTAQID 453 (760)
Q Consensus 431 v~~~~~svlvHcSdGwDrt~qls 453 (760)
...++..|+|||.+|.+|+..+.
T Consensus 77 ~~~~~~~vlVHC~~G~~Rs~~~~ 99 (139)
T cd00127 77 AREKGGKVLVHCLAGVSRSATLV 99 (139)
T ss_pred HHhcCCcEEEECCCCCchhHHHH
Confidence 33457799999999999998664
No 45
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=65.33 E-value=11 Score=38.04 Aligned_cols=37 Identities=35% Similarity=0.543 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCcEEEEeCCCCCCCcchHHHHHHHHhhh
Q psy1514 478 CRIVDKVENHKTSVLVHCSDGWDRTAQLTALAMLLLDP 515 (760)
Q Consensus 478 ~~ia~~l~~~~~sVLVhcsdGwDrT~qvssLaql~LDP 515 (760)
..+...|+.+ ..|+|||--|-.||.-|+|-..+-|..
T Consensus 124 ~eL~~~L~~g-~~V~vHC~GGlGRtGlvAAcLLl~L~~ 160 (168)
T PF05706_consen 124 EELAARLENG-RKVLVHCRGGLGRTGLVAACLLLELGD 160 (168)
T ss_dssp HHHHHHHHTT---EEEE-SSSSSHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHcC-CEEEEECCCCCCHHHHHHHHHHHHHcC
Confidence 4567778776 799999999999999988776665543
No 46
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=64.83 E-value=7.6 Score=37.28 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=22.3
Q ss_pred cCCcEEEEeCCCCCCCcchHHHHHHHHhh
Q psy1514 486 NHKTSVLVHCSDGWDRTAQLTALAMLLLD 514 (760)
Q Consensus 486 ~~~~sVLVhcsdGwDrT~qvssLaql~LD 514 (760)
....+||+||.-|- ||..+.+|.+..+.
T Consensus 84 ~~~~pvL~HC~sG~-Rt~~l~al~~~~~g 111 (135)
T TIGR01244 84 AAEGPVLAYCRSGT-RSSLLWGFRQAAEG 111 (135)
T ss_pred hCCCCEEEEcCCCh-HHHHHHHHHHHHcC
Confidence 33479999999999 99988888766543
No 47
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=64.73 E-value=32 Score=31.48 Aligned_cols=62 Identities=13% Similarity=0.145 Sum_probs=42.6
Q ss_pred EEEEeceEEEEEecCCCCceEEEecccceeEEEEecCccCCCCCcccEEEEecCccEEEEeeccCC
Q psy1514 50 ILSVTNYKLYFRSIDRETPYVVEVPLGVVSRVEKVGGQLSRGENSYGIELFCKDMRNLRFGHKQEN 115 (760)
Q Consensus 50 tL~lTnyrLiF~~~~~~~~~~~~IPL~~I~~Vek~~~~~s~g~~~~~L~I~CKDfR~l~f~f~~e~ 115 (760)
-..||+-+|.|-....+. .--.|||..|..||.+.... ....+.++|.+.| |.+.+..+.+.
T Consensus 25 wF~Lt~~~L~Y~k~~~~~-~~g~I~L~~i~~ve~v~~~~--~~~~~~fqivt~~-r~~yi~a~s~~ 86 (98)
T cd01244 25 YFQLTTTHLSWAKDVQCK-KSALIKLAAIKGTEPLSDKS--FVNVDIITIVCED-DTMQLQFEAPV 86 (98)
T ss_pred EEEECCCEEEEECCCCCc-eeeeEEccceEEEEEcCCcc--cCCCceEEEEeCC-CeEEEECCCHH
Confidence 368899999776543332 34589999999999876321 1224578998877 77777776543
No 48
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=64.10 E-value=7.3 Score=36.79 Aligned_cols=28 Identities=32% Similarity=0.571 Sum_probs=21.1
Q ss_pred HHHHhhccCceeEEecCCCCCccccccc
Q psy1514 427 IVDKVENHKTSVLVHCSDGWDRTAQIDE 454 (760)
Q Consensus 427 i~~~v~~~~~svlvHcSdGwDrt~qls~ 454 (760)
.++....++..|+|||..|.+|+..+..
T Consensus 70 ~i~~~~~~~~~VlVHC~~G~~RS~~v~~ 97 (138)
T smart00195 70 FIEDAEKKGGKVLVHCQAGVSRSATLII 97 (138)
T ss_pred HHHHHhcCCCeEEEECCCCCchHHHHHH
Confidence 3344456778999999999999986543
No 49
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=63.29 E-value=10 Score=38.21 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCcchHHH
Q psy1514 471 KCILAGACRIVDKVENHKTSVLVHCSDGWDRTAQLTA 507 (760)
Q Consensus 471 ~~iL~~a~~ia~~l~~~~~sVLVhcsdGwDrT~qvss 507 (760)
+.+-..+..|.+.+..+ ..|+|||.-|-.||.-|.+
T Consensus 89 ~~l~~~v~~i~~~~~~g-~kVvVHC~~GigRSgtvia 124 (180)
T COG2453 89 EDLDKIVDFIEEALSKG-KKVVVHCQGGIGRSGTVIA 124 (180)
T ss_pred HHHHHHHHHHHHHHhcC-CeEEEEcCCCCchHHHHHH
Confidence 45556666666666666 5999999999999976654
No 50
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=58.20 E-value=42 Score=29.54 Aligned_cols=55 Identities=20% Similarity=0.358 Sum_probs=38.8
Q ss_pred CeeEEEEEeceE--EEEEecCCCCceEEEecccceeEEEEecCccCCCCCcccEEEEecCc
Q psy1514 46 PARGILSVTNYK--LYFRSIDRETPYVVEVPLGVVSRVEKVGGQLSRGENSYGIELFCKDM 104 (760)
Q Consensus 46 ~i~GtL~lTnyr--LiF~~~~~~~~~~~~IPL~~I~~Vek~~~~~s~g~~~~~L~I~CKDf 104 (760)
...|+|+||+=| +.+.+...+.+..+.||+..|....-.. .+..--.|.|.-||-
T Consensus 11 K~~G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp----~~s~Kv~Lki~~~~~ 67 (79)
T PF08567_consen 11 KKDGTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSP----EGSPKVMLKIVLKDD 67 (79)
T ss_dssp TEEEEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE------TTSSTEEEEEEETTS
T ss_pred cCCcEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCC----CCCcceEEEEEEecC
Confidence 578999999999 9999976666546899999999876432 111112466666664
No 51
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=54.54 E-value=9.6 Score=35.60 Aligned_cols=29 Identities=24% Similarity=0.557 Sum_probs=21.6
Q ss_pred HHHHHhhccCceeEEecCCCCCccccccc
Q psy1514 426 RIVDKVENHKTSVLVHCSDGWDRTAQIDE 454 (760)
Q Consensus 426 ~i~~~v~~~~~svlvHcSdGwDrt~qls~ 454 (760)
..++.....+..|+|||..|-+|++-+..
T Consensus 64 ~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ 92 (133)
T PF00782_consen 64 EFIENAISEGGKVLVHCKAGLSRSGAVAA 92 (133)
T ss_dssp HHHHHHHHTTSEEEEEESSSSSHHHHHHH
T ss_pred HhhhhhhcccceeEEEeCCCcccchHHHH
Confidence 33344456788899999999999986643
No 52
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=54.50 E-value=6.8 Score=34.37 Aligned_cols=19 Identities=42% Similarity=0.655 Sum_probs=16.4
Q ss_pred CceeEEecCCCCCcccccc
Q psy1514 435 KTSVLVHCSDGWDRTAQID 453 (760)
Q Consensus 435 ~~svlvHcSdGwDrt~qls 453 (760)
+.+|+|||++|.+||..+.
T Consensus 39 ~~pvlVHC~~G~gRtg~~~ 57 (105)
T smart00404 39 SGPVVVHCSAGVGRTGTFV 57 (105)
T ss_pred CCCEEEEeCCCCChhhHHH
Confidence 5689999999999998653
No 53
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=54.50 E-value=6.8 Score=34.37 Aligned_cols=19 Identities=42% Similarity=0.655 Sum_probs=16.4
Q ss_pred CceeEEecCCCCCcccccc
Q psy1514 435 KTSVLVHCSDGWDRTAQID 453 (760)
Q Consensus 435 ~~svlvHcSdGwDrt~qls 453 (760)
+.+|+|||++|.+||..+.
T Consensus 39 ~~pvlVHC~~G~gRtg~~~ 57 (105)
T smart00012 39 SGPVVVHCSAGVGRTGTFV 57 (105)
T ss_pred CCCEEEEeCCCCChhhHHH
Confidence 5689999999999998653
No 54
>PRK12361 hypothetical protein; Provisional
Probab=53.83 E-value=14 Score=43.83 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCCcEEEEeCCCCCCCcchHHHH
Q psy1514 475 AGACRIVDKVENHKTSVLVHCSDGWDRTAQLTAL 508 (760)
Q Consensus 475 ~~a~~ia~~l~~~~~sVLVhcsdGwDrT~qvssL 508 (760)
..|+..++.....+.+|+|||.-|..|++-+++-
T Consensus 162 ~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~a 195 (547)
T PRK12361 162 NQAINWIHRQVRANKSVVVHCALGRGRSVLVLAA 195 (547)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHH
Confidence 3444444444444579999999999999776543
No 55
>PF07910 Peptidase_C78: Peptidase family C78; InterPro: IPR012462 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry contains UfSP1 and UfSP2, which are cysteine peptidases required for the processing and activation of Ubiquitin fold modifier 1 (Ufm1, IPR005375 from INTERPRO) and for its release from conjugated cellular proteins. UfSP1 and UfSP2 are 217 aa and 461 aa respectively [, ]. The peptidases belong to MEROPS peptidase family C78, clan CA. The UfSP2 family have an N-terminal extension with one or more zinc finger domains of the C2H2 type (IPR007087 from INTERPRO), which have been shown to be involved in protein:protein interaction. UfSP2 is present in most, if not all, multi-cellular organisms including plants, nematodes, flies, and mammals, whereas UfSP1 is not present in plants and nematodes []. ; PDB: 3OQC_B 2Z84_A.
Probab=53.08 E-value=2.1 Score=44.72 Aligned_cols=127 Identities=20% Similarity=0.275 Sum_probs=55.8
Q ss_pred CCcchhHHHHHHHHHHHhcCCCCcccccccc-CCchhhHHHHHHHHhhhHHHHHHhhccCc-eeEEecC-CCCCcccccc
Q psy1514 377 DIHNIHVMRESQRKLKELCFPQIDEARWFSG-VDSTYWLKHIKCILAGACRIVDKVENHKT-SVLVHCS-DGWDRTAQID 453 (760)
Q Consensus 377 ~i~nih~~r~S~~kl~~~~~~~~~~s~wls~-l~~s~Wl~~i~~il~ga~~i~~~v~~~~~-svlvHcS-dGwDrt~qls 453 (760)
.||+|..+|+.+....+.=++.. ....... +.+-.|. |+..+...+..-+- +-++|.. .|-+..+.-
T Consensus 53 ~vPsi~~iQ~~le~awdkG~d~~-G~~~~~~~~GsrkWI--------Gt~E~~~~l~~~gi~~~i~~f~~~~~~~~~~~- 122 (218)
T PF07910_consen 53 RVPSIREIQQWLEEAWDKGFDPQ-GAQLTGGFVGSRKWI--------GTTEASALLRSLGIPCKIVDFPKSGSEIRAHP- 122 (218)
T ss_dssp T---HHHHHHHHHHCTSS---C--------CGTT--------------HHHHHHHHHHC-SEEEEEEES-SGCCC---C-
T ss_pred CCCCHHHHHHHHHHHHhhcCCcc-cccccccccccccEE--------cHHHHHHHHhhCCceEEEEEEECCCcccccHH-
Confidence 58899998876554433211110 0111112 3344688 77777777666553 3477776 432221111
Q ss_pred ccccccccCchhHHHHHHHHHHHHHHHHHHHhcC-C----------cEEEEeCCCCCCCcch------HHHHHHHHhhhh
Q psy1514 454 EARWFSGVDSTYWLKHIKCILAGACRIVDKVENH-K----------TSVLVHCSDGWDRTAQ------LTALAMLLLDPY 516 (760)
Q Consensus 454 ~~~~~~~l~~~~Wl~~i~~iL~~a~~ia~~l~~~-~----------~sVLVhcsdGwDrT~q------vssLaql~LDPy 516 (760)
.....|.+++... + .||.+.. +|.-+|.. --...-|+|||.
T Consensus 123 ---------------------~l~~~v~~yF~~~~~~~~~~~~t~~~Piylqh-~ghS~TIvGie~~~~g~~~LLVlDP~ 180 (218)
T PF07910_consen 123 ---------------------RLLDWVWNYFESGCGSPSQSRQTNKPPIYLQH-DGHSRTIVGIERNKDGEVNLLVLDPH 180 (218)
T ss_dssp ---------------------CGHHHHHHHHCCT--------------EEEEE-TTEEEEEEEEEE-TT--EEEEEE-TT
T ss_pred ---------------------HHHHHHHHHhhcCCCccccccccCCCCeEeCc-cccceEEEEEEECCCCCEEEEEECCC
Confidence 1122334455444 3 6888766 77766521 123445899999
Q ss_pred hHHHHhHHHHHHHhhhhcC
Q psy1514 517 YRTIKGFEVLIEKEWLSFG 535 (760)
Q Consensus 517 yRTi~GF~~LIEKEW~sfG 535 (760)
|.+=+-=..|.+|.|+++.
T Consensus 181 ~~~~~~~~~l~~~~~~~w~ 199 (218)
T PF07910_consen 181 YTGSDIKKLLGEKGWVSWQ 199 (218)
T ss_dssp --S-S-CHHHHHTTSEEE-
T ss_pred CCCHHHHHHHHhCCccccc
Confidence 9998666778899998875
No 56
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=48.45 E-value=11 Score=37.23 Aligned_cols=30 Identities=30% Similarity=0.557 Sum_probs=19.0
Q ss_pred HHHHHHhhccCceeEEecCCCCCccccccc
Q psy1514 425 CRIVDKVENHKTSVLVHCSDGWDRTAQIDE 454 (760)
Q Consensus 425 ~~i~~~v~~~~~svlvHcSdGwDrt~qls~ 454 (760)
..+.+.+.++..++|+||+-|=|||..++.
T Consensus 114 ~~~~~~l~~~~~p~l~HC~aGKDRTG~~~a 143 (164)
T PF13350_consen 114 RKIFELLADAPGPVLFHCTAGKDRTGVVAA 143 (164)
T ss_dssp HHHHHHHH-TT--EEEE-SSSSSHHHHHHH
T ss_pred HHHHHHhccCCCcEEEECCCCCccHHHHHH
Confidence 334455555557999999999999987654
No 57
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=45.63 E-value=21 Score=33.32 Aligned_cols=31 Identities=39% Similarity=0.553 Sum_probs=21.6
Q ss_pred HHHHHhcCCcEEEEeCCCCCCCcchHHHHHHH
Q psy1514 480 IVDKVENHKTSVLVHCSDGWDRTAQLTALAML 511 (760)
Q Consensus 480 ia~~l~~~~~sVLVhcsdGwDrT~qvssLaql 511 (760)
.++.|+....+||+||.-|. |...+-+|++.
T Consensus 78 f~~~l~~~~~Pvl~hC~sG~-Ra~~l~~l~~~ 108 (110)
T PF04273_consen 78 FADALESLPKPVLAHCRSGT-RASALWALAQA 108 (110)
T ss_dssp HHHHHHTTTTSEEEE-SCSH-HHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEECCCCh-hHHHHHHHHhh
Confidence 34455554569999999999 67777777764
No 58
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=44.89 E-value=20 Score=42.05 Aligned_cols=33 Identities=27% Similarity=0.462 Sum_probs=23.9
Q ss_pred EEEeCCCCCCCcchHHHHHHHHhh----hhhHHHHhHH
Q psy1514 491 VLVHCSDGWDRTAQLTALAMLLLD----PYYRTIKGFE 524 (760)
Q Consensus 491 VLVhcsdGwDrT~qvssLaql~LD----PyyRTi~GF~ 524 (760)
.+||||.|-.||..++++-. +-| ..+.++..|.
T Consensus 469 PVVHCSAGVGRTGTFIAi~l-lk~~~~~sle~IV~dlR 505 (535)
T PRK15375 469 PMIHCLGGVGRTGTMAAALV-LKDNPHSNLEQVRADFR 505 (535)
T ss_pred ceEEcCCCCchHHHHHHHHH-HhccccCCHHHHHHHHH
Confidence 47999999999999998854 333 3555555554
No 59
>KOG2836|consensus
Probab=43.78 E-value=62 Score=31.61 Aligned_cols=33 Identities=36% Similarity=0.522 Sum_probs=26.9
Q ss_pred hcCCcEEEEeCCCCCCCcchHHHHHHHHhhhhh
Q psy1514 485 ENHKTSVLVHCSDGWDRTAQLTALAMLLLDPYY 517 (760)
Q Consensus 485 ~~~~~sVLVhcsdGwDrT~qvssLaql~LDPyy 517 (760)
+.-+.+|-|||--|-.|.+.+++||.|=.-=-|
T Consensus 94 e~p~~cvavhcvaglgrapvlvalalie~gmky 126 (173)
T KOG2836|consen 94 EEPGCCVAVHCVAGLGRAPVLVALALIEAGMKY 126 (173)
T ss_pred hCCCCeEEEEeecccCcchHHHHHHHHHccccH
Confidence 344699999999999999999999977554444
No 60
>KOG0792|consensus
Probab=42.82 E-value=21 Score=44.80 Aligned_cols=35 Identities=34% Similarity=0.410 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhcC-CcEEEEeCCCCCCCcchH
Q psy1514 470 IKCILAGACRIVDKVENH-KTSVLVHCSDGWDRTAQL 505 (760)
Q Consensus 470 i~~iL~~a~~ia~~l~~~-~~sVLVhcsdGwDrT~qv 505 (760)
+..+|+-... ++.++.+ +-+||||||.|-.||..+
T Consensus 1045 ~~~FL~Flee-vrsvR~~t~pPilvHCSAGiGRTGVl 1080 (1144)
T KOG0792|consen 1045 PNDFLDFLEE-VRSVRRGTNPPILVHCSAGIGRTGVL 1080 (1144)
T ss_pred hHHHHHHHHH-HHHHhccCCCCeEEEccCCCCcceeh
Confidence 3344443333 3455555 569999999999999764
No 61
>KOG0789|consensus
Probab=42.23 E-value=53 Score=36.90 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=19.2
Q ss_pred CCcEEEEeCCCCCCCcchHHHHH
Q psy1514 487 HKTSVLVHCSDGWDRTAQLTALA 509 (760)
Q Consensus 487 ~~~sVLVhcsdGwDrT~qvssLa 509 (760)
...+++||||.|-+||.-++++-
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~ 320 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIE 320 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHH
Confidence 34799999999999998777654
No 62
>KOG0791|consensus
Probab=37.86 E-value=40 Score=37.87 Aligned_cols=45 Identities=27% Similarity=0.434 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEeCCCCCCCcchHHHHHHHHhhhhhHHHH
Q psy1514 472 CILAGACRIVDKVENHKTSVLVHCSDGWDRTAQLTALAMLLLDPYYRTIK 521 (760)
Q Consensus 472 ~iL~~a~~ia~~l~~~~~sVLVhcsdGwDrT~qvssLaql~LDPyyRTi~ 521 (760)
.++.-...+-+.+..+.++++||||-|-.||.-.- +||+--|+++
T Consensus 271 sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFi-----ald~LLqq~~ 315 (374)
T KOG0791|consen 271 SLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFI-----ALDRLLQQID 315 (374)
T ss_pred hHHHHHHHHHhhcccCCCceeEEeecccccccchH-----hHHHHHHHhc
Confidence 45555566667777778999999999999997554 4455555543
No 63
>KOG1716|consensus
Probab=36.96 E-value=53 Score=35.60 Aligned_cols=37 Identities=32% Similarity=0.497 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCcchHH
Q psy1514 470 IKCILAGACRIVDKVENHKTSVLVHCSDGWDRTAQLT 506 (760)
Q Consensus 470 i~~iL~~a~~ia~~l~~~~~sVLVhcsdGwDrT~qvs 506 (760)
|..-+..++...+.....+.-|||||..|--|++-++
T Consensus 137 i~~~~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~v 173 (285)
T KOG1716|consen 137 ILQHFPEAISFIEKAREKGGKVLVHCQAGVSRSATLV 173 (285)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEcCCccchhHHHH
Confidence 3344556666666665667899999999999986433
No 64
>PF03517 Voldacs: Regulator of volume decrease after cellular swelling; InterPro: IPR003521 The nucleotide-sensitive chloride conductance regulatory protein (ICln) is found ubiquitously in mammalian (and other) cell types and is postulated to play a critical role in cell volume regulation. Initial studies proposed that ICln was itself a swelling-activated anion channel; however, further studies demonstrated that it is localised primarily to the cell cytoplasm. It has therefore been postulated that activation of cell volume regulation may involve reversible translocation of ICln from the cytoplasm, and its insertion into the plasma membrane. It is not resolved whether the anionic channel involved in cell volume regulation after cell-swelling comprises one or more subunits, and if it does, whether ICln is in fact one of them [].; GO: 0006821 chloride transport, 0006884 cell volume homeostasis; PDB: 1ZYI_A.
Probab=35.55 E-value=41 Score=32.46 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=18.2
Q ss_pred EEEEEeceEEEEEec-CCCCceEEEecccce
Q psy1514 49 GILSVTNYKLYFRSI-DRETPYVVEVPLGVV 78 (760)
Q Consensus 49 GtL~lTnyrLiF~~~-~~~~~~~~~IPL~~I 78 (760)
|+||||+-+|+|.+. ... .-+.||...|
T Consensus 1 g~L~Vt~~~l~w~~~~~~~--~G~~ipY~sI 29 (135)
T PF03517_consen 1 GTLYVTESRLIWFSNEDSS--KGFSIPYPSI 29 (135)
T ss_dssp EEEEEETTEEEEEET--TT--EEEEESS---
T ss_pred CEEEEecCEEEEECCCcCC--cceeecCCeE
Confidence 899999999999983 232 3456665555
No 65
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=34.90 E-value=2.1e+02 Score=25.83 Aligned_cols=60 Identities=22% Similarity=0.229 Sum_probs=41.0
Q ss_pred CCeeEEEEEeceEEEE-EecCCCCceEEEecccceeEEEEecCccCCCCCcccEEEEecC--ccEEEEe
Q psy1514 45 GPARGILSVTNYKLYF-RSIDRETPYVVEVPLGVVSRVEKVGGQLSRGENSYGIELFCKD--MRNLRFG 110 (760)
Q Consensus 45 ~~i~GtL~lTnyrLiF-~~~~~~~~~~~~IPL~~I~~Vek~~~~~s~g~~~~~L~I~CKD--fR~l~f~ 110 (760)
++-+|.||.++--|+| ... | .+.||+.-|+.|+=... ++.+...+-+.|..|| -..++|.
T Consensus 9 ka~~g~L~pl~~~l~f~~~k----P-~~~i~~~dI~~v~feRv-~~~~~ktFDl~v~~k~~~~~~~~fs 71 (95)
T PF08512_consen 9 KANEGFLYPLEKCLLFGLEK----P-PFVIPLDDIESVEFERV-SSFSSKTFDLVVILKDYEGPPHEFS 71 (95)
T ss_dssp TTEEEEEEEESSEEEEECSS----S--EEEEGGGEEEEEEE---ESSSSSEEEEEEEETT-TS-EEEEE
T ss_pred cccCEEEEEccceEEEecCC----C-eEEEEhhHeeEEEEEec-ccCcceEEEEEEEEecCCCCcEEEe
Confidence 5689999999999999 432 2 57889999998875331 1122345678999999 5666663
No 66
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=34.14 E-value=42 Score=32.77 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEeCCCCCCCcchHHHHHHHH
Q psy1514 472 CILAGACRIVDKVENHKTSVLVHCSDGWDRTAQLTALAMLL 512 (760)
Q Consensus 472 ~iL~~a~~ia~~l~~~~~sVLVhcsdGwDrT~qvssLaql~ 512 (760)
..++....++..+.. ++.+++||..|-.||+-..+++.||
T Consensus 109 ~~iD~fi~~v~~~p~-~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 109 EDIDAFINFVKSLPK-DTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HHHHHHHHHHHTS-T-T-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 345555566666633 5999999999999998665555554
No 67
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=32.42 E-value=4.1e+02 Score=24.66 Aligned_cols=77 Identities=18% Similarity=0.113 Sum_probs=42.4
Q ss_pred CCCCCceEEEEeccEEEeCCCCCCeeEEEEEece-EEEEEecCCCCceEEEecccceeEEEEecCccCCCCCcccEEEEe
Q psy1514 23 PLLPGEIIQGFAREVTYLCPYSGPARGILSVTNY-KLYFRSIDRETPYVVEVPLGVVSRVEKVGGQLSRGENSYGIELFC 101 (760)
Q Consensus 23 ~lLPGE~i~~~a~~V~~~~p~~~~i~GtL~lTny-rLiF~~~~~~~~~~~~IPL~~I~~Vek~~~~~s~g~~~~~L~I~C 101 (760)
.|.|||.|+... -|.....+. .-.=-|.+|+. ||+++...... .-=.||++.-.+++.... ....|++
T Consensus 6 fl~~ge~Il~~g-~v~K~kgl~-~kkR~liLTd~PrL~Yvdp~~~~-~KGeI~~~~~l~v~~k~~--------~~F~I~t 74 (104)
T PF14593_consen 6 FLNPGELILKQG-YVKKRKGLF-AKKRQLILTDGPRLFYVDPKKMV-LKGEIPWSKELSVEVKSF--------KTFFIHT 74 (104)
T ss_dssp GTT-T--EEEEE-EEEEEETTE-EEEEEEEEETTTEEEEEETTTTE-EEEEE--STT-EEEECSS--------SEEEEEE
T ss_pred hhcCCCeEEEEE-EEEEeeceE-EEEEEEEEccCCEEEEEECCCCe-ECcEEecCCceEEEEccC--------CEEEEEC
Confidence 356799998763 122222211 23446899999 99999765443 335788887778876541 2566777
Q ss_pred cCccEEEEee
Q psy1514 102 KDMRNLRFGH 111 (760)
Q Consensus 102 KDfR~l~f~f 111 (760)
. -|.+.|.=
T Consensus 75 p-~RtY~l~d 83 (104)
T PF14593_consen 75 P-KRTYYLED 83 (104)
T ss_dssp T-TEEEEEE-
T ss_pred C-CcEEEEEC
Confidence 6 56666543
No 68
>PF04683 Proteasom_Rpn13: Proteasome complex subunit Rpn13 ubiquitin receptor; InterPro: IPR006773 This family was thought originally to be involved in cell-adhesion [, ], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain []. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold []. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37 []. ; GO: 0005634 nucleus, 0005737 cytoplasm; PDB: 2Z4D_A 2KR0_A 2Z59_A 2R2Y_A.
Probab=31.53 E-value=2e+02 Score=25.59 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=31.0
Q ss_pred CeeEEEEEec-----eEEEEEecCC-CCceEEEe-cccceeEEEEecCccCCCCCcccEEEEecCccEEEEeeccC
Q psy1514 46 PARGILSVTN-----YKLYFRSIDR-ETPYVVEV-PLGVVSRVEKVGGQLSRGENSYGIELFCKDMRNLRFGHKQE 114 (760)
Q Consensus 46 ~i~GtL~lTn-----yrLiF~~~~~-~~~~~~~I-PL~~I~~Vek~~~~~s~g~~~~~L~I~CKDfR~l~f~f~~e 114 (760)
+..|.|+|.- +|+.+.+++. .. .+.++ ...-=..++++. .||+-|++.|.|...
T Consensus 14 ~~KG~l~l~~~~d~l~~f~W~~r~~~~~-~e~d~il~pg~~~f~~V~--------------~c~tGRVy~LkF~ss 74 (85)
T PF04683_consen 14 PRKGLLYLYKSEDGLLHFCWKPRDTTGE-VEDDLILFPGDATFKKVP--------------QCKTGRVYVLKFKSS 74 (85)
T ss_dssp SS-EEEEEEETTTS-EEEEEEETST----EEEEEEE-TTTEEEEE-T--------------TSSTS-EEEEEETTT
T ss_pred CCCEEEEEEECCCCeEEEEEEEcCcCCC-cccceecCCCCeEEEECC--------------cCCCCeEEEEEECCC
Confidence 4678888765 7888888765 32 22222 223334455543 589999999999653
No 69
>KOG1717|consensus
Probab=30.92 E-value=68 Score=34.74 Aligned_cols=42 Identities=24% Similarity=0.425 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCcchHH
Q psy1514 465 YWLKHIKCILAGACRIVDKVENHKTSVLVHCSDGWDRTAQLT 506 (760)
Q Consensus 465 ~Wl~~i~~iL~~a~~ia~~l~~~~~sVLVhcsdGwDrT~qvs 506 (760)
.|-+.+..+.--|+..++--.....-|||||=-|--|..-||
T Consensus 228 h~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSvTvt 269 (343)
T KOG1717|consen 228 HASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSVTVT 269 (343)
T ss_pred hhhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchhHHH
Confidence 455777788888888877777777999999999999976665
No 70
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=29.98 E-value=96 Score=32.61 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=17.3
Q ss_pred CceeEEecCCCCCccccccc
Q psy1514 435 KTSVLVHCSDGWDRTAQIDE 454 (760)
Q Consensus 435 ~~svlvHcSdGwDrt~qls~ 454 (760)
+..++|||++|-.|+.....
T Consensus 193 ~~pivVHC~~G~gRsg~f~a 212 (258)
T smart00194 193 TGPIVVHCSAGVGRTGTFIA 212 (258)
T ss_pred CCCEEEEeCCCCCccchhhH
Confidence 67899999999999987654
No 71
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=29.64 E-value=90 Score=27.40 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=37.9
Q ss_pred ccccccccccCCCCCCcchHHHHHHHHHHHHHHHHHhHHHHHHhhccCC
Q psy1514 651 KLWKGLYCRWNPSMRAQDPIYQRTRELLVLKEQLDKSSEECRKELKARM 699 (760)
Q Consensus 651 ~lW~~~y~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 699 (760)
-||--|-.+|.....-.+...+++.+|...-+.|+.|++.|.+=+++-+
T Consensus 21 WL~lHY~sk~~~~~gLs~~d~~~L~~L~~~a~rm~eRI~tLE~ILdae~ 69 (75)
T PF06667_consen 21 WLILHYRSKWKSSQGLSEEDEQRLQELYEQAERMEERIETLERILDAEH 69 (75)
T ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3566777778655555566778899999999999999999988876544
No 72
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=29.54 E-value=55 Score=32.65 Aligned_cols=46 Identities=26% Similarity=0.439 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCcchHHHHHHHHhhhhhH
Q psy1514 468 KHIKCILAGACRIVDKVENHKTSVLVHCSDGWDRTAQLTALAMLLLDPYYR 518 (760)
Q Consensus 468 ~~i~~iL~~a~~ia~~l~~~~~sVLVhcsdGwDrT~qvssLaql~LDPyyR 518 (760)
.||+.+++.+.. .... ++.||||--|-.|++-++=.+-+-|+|+--
T Consensus 78 ~Hv~~i~DF~~~----wp~~-apllIHC~aGISRStA~A~i~a~ala~~~d 123 (172)
T COG5350 78 AHVRAIIDFADE----WPRF-APLLIHCYAGISRSTAAALIAALALAPDMD 123 (172)
T ss_pred HHHHHHHHHHhc----Cccc-cceeeeeccccccchHHHHHHHHhhccccC
Confidence 789888877553 3444 899999999999988666666668888753
No 73
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=29.16 E-value=92 Score=27.33 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=38.0
Q ss_pred ccccccccccCCCCCCcchHHHHHHHHHHHHHHHHHhHHHHHHhhccCCC
Q psy1514 651 KLWKGLYCRWNPSMRAQDPIYQRTRELLVLKEQLDKSSEECRKELKARMP 700 (760)
Q Consensus 651 ~lW~~~y~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 700 (760)
-+|--|-.+|.....-.+...+++.++...-+.|+.|++.|.+=+.+.++
T Consensus 21 wl~lHY~~k~~~~~~ls~~d~~~L~~L~~~a~rm~eRI~tLE~ILd~e~P 70 (75)
T TIGR02976 21 WLILHYRSKRKTAASLSTDDQALLQELYAKADRLEERIDTLERILDAEHP 70 (75)
T ss_pred HHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 45666666776654445566788899999999999999999888876553
No 74
>KOG2760|consensus
Probab=28.75 E-value=66 Score=36.52 Aligned_cols=59 Identities=19% Similarity=0.171 Sum_probs=38.5
Q ss_pred CCceEEEEeccEEEeCCCCC---CeeEEEEEeceEEEEEe--cCCCCceEEEecccceeEEEEe
Q psy1514 26 PGEIIQGFAREVTYLCPYSG---PARGILSVTNYKLYFRS--IDRETPYVVEVPLGVVSRVEKV 84 (760)
Q Consensus 26 PGE~i~~~a~~V~~~~p~~~---~i~GtL~lTnyrLiF~~--~~~~~~~~~~IPL~~I~~Vek~ 84 (760)
+-|.++.+..+|.+++...+ --.|++.+|.+|+|..+ ...+....+-+||..|..|+.-
T Consensus 41 ~ne~l~lt~~~I~~~D~~~k~~~~~dg~~vltt~Rliw~~p~~~~~~~~~~~~pls~vI~v~~~ 104 (432)
T KOG2760|consen 41 QNETLLLTSQRIIIYDGDKKTTKFDDGTLVLTTHRLIWRSPTSSADVEVTWVCPLSMVINVGEP 104 (432)
T ss_pred cCceEEEeecceEEecCCCccccccchhhhhhhceeeecCcccccccceeeeeceeEEEEecCc
Confidence 46667777777777654322 25688888888888874 2222334567888888887753
No 75
>PRK09458 pspB phage shock protein B; Provisional
Probab=28.62 E-value=1.3e+02 Score=26.56 Aligned_cols=48 Identities=19% Similarity=0.170 Sum_probs=36.7
Q ss_pred cccccccccCCCCCCcchHHHHHHHHHHHHHHHHHhHHHHHHhhccCC
Q psy1514 652 LWKGLYCRWNPSMRAQDPIYQRTRELLVLKEQLDKSSEECRKELKARM 699 (760)
Q Consensus 652 lW~~~y~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 699 (760)
||--|-.+|.....-.+...+++.++.+.-+.++.|++.|.+=+.+-+
T Consensus 22 L~LHY~sk~~~~~~Ls~~d~~~L~~L~~~A~rm~~RI~tLE~ILDae~ 69 (75)
T PRK09458 22 LWLHYRSKRQGSQGLSQEEQQRLAQLTEKAERMRERIQALEAILDAEH 69 (75)
T ss_pred HHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 566677777765444556778889999999999999999988777644
No 76
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=28.13 E-value=85 Score=32.34 Aligned_cols=21 Identities=33% Similarity=0.552 Sum_probs=17.6
Q ss_pred cCceeEEecCCCCCccccccc
Q psy1514 434 HKTSVLVHCSDGWDRTAQIDE 454 (760)
Q Consensus 434 ~~~svlvHcSdGwDrt~qls~ 454 (760)
.+..|+|||++|-.|+..+..
T Consensus 165 ~~~pivVHC~~G~gRsg~~~a 185 (231)
T cd00047 165 GSGPIVVHCSAGVGRTGTFIA 185 (231)
T ss_pred CCCCeEEECCCCCCccchHHH
Confidence 367899999999999987644
No 77
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=27.36 E-value=69 Score=31.96 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=18.4
Q ss_pred ccCceeEEecCCCCCccccccc
Q psy1514 433 NHKTSVLVHCSDGWDRTAQIDE 454 (760)
Q Consensus 433 ~~~~svlvHcSdGwDrt~qls~ 454 (760)
..+..|+|||..|-.||+-+..
T Consensus 96 ~~g~~V~VHC~aGigRSgt~~a 117 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPILVA 117 (166)
T ss_pred cCCCeEEEECCCCCCHHHHHHH
Confidence 4578899999999999986644
No 78
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=26.92 E-value=32 Score=37.69 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=16.5
Q ss_pred CceeEEecCCCCCccccccc
Q psy1514 435 KTSVLVHCSDGWDRTAQIDE 454 (760)
Q Consensus 435 ~~svlvHcSdGwDrt~qls~ 454 (760)
.++++||||+|-.||...+.
T Consensus 221 ~~PIVVHCSaGvGRTGtFca 240 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCV 240 (298)
T ss_pred CCCEEEECCCCCchhHHHHH
Confidence 46899999999999986543
No 79
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=25.82 E-value=41 Score=33.54 Aligned_cols=19 Identities=42% Similarity=0.810 Sum_probs=14.2
Q ss_pred cCceeEEecCCCCCccccc
Q psy1514 434 HKTSVLVHCSDGWDRTAQI 452 (760)
Q Consensus 434 ~~~svlvHcSdGwDrt~ql 452 (760)
....|+|||.+|-|||.-+
T Consensus 90 ~n~PvLiHC~~G~~rTG~v 108 (164)
T PF03162_consen 90 RNYPVLIHCNHGKDRTGLV 108 (164)
T ss_dssp GG-SEEEE-SSSSSHHHHH
T ss_pred CCCCEEEEeCCCCcchhhH
Confidence 4468999999999999854
No 80
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=25.27 E-value=41 Score=29.71 Aligned_cols=72 Identities=19% Similarity=0.324 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCceeEEeecccccccchhhHHHHhhhccCCCcccc
Q psy1514 672 QRTRELLVLKEQLDKSSEECRKELKARMPRTYIRPNIPKNSRIVGFERTTGQIIRGMSQRIESQNAKNCEHTYS 745 (760)
Q Consensus 672 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (760)
+++.+++..+++|++++.+|..+|-...+ ..=..+.+.--+|-|+++-.-... |.+..-++..-..+++-+|
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qIy~~Et-~YL~~~~~~GNiikGfd~y~k~~~-~~~~~~~~~~~~~~dRiFS 73 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQIYDKET-SYLEDTSPYGNIIKGFDGYLKSSS-GAANSRRKRGFTDDDRIFS 73 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHccCcCCCCeeChhhhhcccc-ccccccccCCCCccccCcc
Confidence 35788999999999999999999987641 111133344447778877654444 2222222333344555444
No 81
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=24.27 E-value=40 Score=36.94 Aligned_cols=19 Identities=42% Similarity=0.800 Sum_probs=15.7
Q ss_pred CceeEEecCCCCCcccccc
Q psy1514 435 KTSVLVHCSDGWDRTAQID 453 (760)
Q Consensus 435 ~~svlvHcSdGwDrt~qls 453 (760)
.++++||||+|-.||.-..
T Consensus 229 ~~PIvVHCsaGvGRTGtF~ 247 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFC 247 (303)
T ss_pred CCCeEEECCCCCchhHHHH
Confidence 3689999999999998543
No 82
>KOG1720|consensus
Probab=24.17 E-value=1e+02 Score=32.28 Aligned_cols=34 Identities=35% Similarity=0.593 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeCCCCCCCcchHHH
Q psy1514 473 ILAGACRIVDKVENHKTSVLVHCSDGWDRTAQLTA 507 (760)
Q Consensus 473 iL~~a~~ia~~l~~~~~sVLVhcsdGwDrT~qvss 507 (760)
++.-.+.+++-... +.-|.|||--|..||.-|.+
T Consensus 133 ~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~liA 166 (225)
T KOG1720|consen 133 IVKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLIA 166 (225)
T ss_pred HHHHHHHHHHHHHh-cCeEEEEeccCCCchhHHHH
Confidence 44445556666666 47899999999999976543
No 83
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=23.45 E-value=63 Score=32.77 Aligned_cols=21 Identities=33% Similarity=0.768 Sum_probs=16.7
Q ss_pred hccCceeEEecCCCCCccccc
Q psy1514 432 ENHKTSVLVHCSDGWDRTAQI 452 (760)
Q Consensus 432 ~~~~~svlvHcSdGwDrt~ql 452 (760)
.....+++|||++|-.|+..+
T Consensus 167 ~~~~~pivVhc~~G~gRsg~f 187 (235)
T PF00102_consen 167 DDPNGPIVVHCSDGVGRSGTF 187 (235)
T ss_dssp STTSSEEEEESSSSSHHHHHH
T ss_pred cCCccceEeeccccccccccc
Confidence 345689999999998887754
No 84
>PF15581 Imm35: Immunity protein 35
Probab=23.27 E-value=56 Score=29.41 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=21.4
Q ss_pred HHHHHhhhhhHHHHhHHHHHHHhhhhc
Q psy1514 508 LAMLLLDPYYRTIKGFEVLIEKEWLSF 534 (760)
Q Consensus 508 Laql~LDPyyRTi~GF~~LIEKEW~sf 534 (760)
-++.-.|.--+|++|.+.|||.||-..
T Consensus 20 Y~~q~~esa~~~i~~l~~lIe~eWRGl 46 (93)
T PF15581_consen 20 YLRQGEESARRTIRNLESLIEHEWRGL 46 (93)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHcCC
Confidence 445556777789999999999999643
No 85
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=23.22 E-value=90 Score=34.54 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=16.0
Q ss_pred ceeEEecCCCCCccccccc
Q psy1514 436 TSVLVHCSDGWDRTAQIDE 454 (760)
Q Consensus 436 ~svlvHcSdGwDrt~qls~ 454 (760)
++++||||+|-.||...+.
T Consensus 248 ~PIvVHCsaGvGRTGtfca 266 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCA 266 (323)
T ss_pred CCEEEEcCCCCCcchhHHH
Confidence 6899999999999986543
No 86
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=23.13 E-value=41 Score=36.98 Aligned_cols=19 Identities=37% Similarity=0.672 Sum_probs=15.8
Q ss_pred ceeEEecCCCCCccccccc
Q psy1514 436 TSVLVHCSDGWDRTAQIDE 454 (760)
Q Consensus 436 ~svlvHcSdGwDrt~qls~ 454 (760)
++++||||+|-.||.-...
T Consensus 230 ~PIvVHCsaGvGRtGtfca 248 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCA 248 (312)
T ss_pred CCEEEEecCCCcchhHHHH
Confidence 5899999999999986543
No 87
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=23.11 E-value=4.2e+02 Score=21.69 Aligned_cols=66 Identities=20% Similarity=0.201 Sum_probs=44.9
Q ss_pred CCeeEEEEEeceEEEEEecCCCCceE-EEecccceeEEEEecCccCCCCCcccEEEEecC--ccEEEEeeccC
Q psy1514 45 GPARGILSVTNYKLYFRSIDRETPYV-VEVPLGVVSRVEKVGGQLSRGENSYGIELFCKD--MRNLRFGHKQE 114 (760)
Q Consensus 45 ~~i~GtL~lTnyrLiF~~~~~~~~~~-~~IPL~~I~~Vek~~~~~s~g~~~~~L~I~CKD--fR~l~f~f~~e 114 (760)
.....-+.|++..|.+.....+.... ..+|+..|. |...... . .....+.|..++ .+.+.|....+
T Consensus 18 ~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~-v~~~~~~--~-~~~~~F~i~~~~~~~~~~~~~~~~~ 86 (99)
T cd00900 18 RWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEIS-VEEDPDG--S-DDPNCFAIVTKDRGRRVFVFQADSE 86 (99)
T ss_pred CceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceE-EEECCCC--C-CCCceEEEECCCCCcEEEEEEcCCH
Confidence 45677899999999888765544222 257888877 7764311 0 123578889987 88888888764
No 88
>KOG4347|consensus
Probab=22.42 E-value=58 Score=39.12 Aligned_cols=60 Identities=27% Similarity=0.295 Sum_probs=44.4
Q ss_pred CCCCCceEEEEeccEEEeCCCCC-CeeEEEEEeceEEEEEecCCCCceEEEecccceeEEEEec
Q psy1514 23 PLLPGEIIQGFAREVTYLCPYSG-PARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSRVEKVG 85 (760)
Q Consensus 23 ~lLPGE~i~~~a~~V~~~~p~~~-~i~GtL~lTnyrLiF~~~~~~~~~~~~IPL~~I~~Vek~~ 85 (760)
.-|| |.+... ..+.+..|++. ...|.||++.+.+.|.+.+... ..+-+||..|-+|||..
T Consensus 16 Frlp-e~l~~~-~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~~-c~~~~Pl~~vr~ve~~~ 76 (671)
T KOG4347|consen 16 FRLP-EKLDGS-TMCNLWTPYSRYHEQGRLFLSTNFICFASDTEWL-CSFITPLLAVRSVERLD 76 (671)
T ss_pred eecc-hhcCce-eecccCCCcchhhccceeeeccceEEeecCCccc-ceEeeehhhhhhhhccC
Confidence 3477 776432 23334456543 4889999999999999876554 57889999999999986
No 89
>KOG3238|consensus
Probab=21.93 E-value=89 Score=32.27 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=22.3
Q ss_pred eeEEEEEeceEEEEEecCCCCceEE---Eeccccee
Q psy1514 47 ARGILSVTNYKLYFRSIDRETPYVV---EVPLGVVS 79 (760)
Q Consensus 47 i~GtL~lTnyrLiF~~~~~~~~~~~---~IPL~~I~ 79 (760)
-.||||||.-+|++.+.+..+-+.+ .|-|+.|+
T Consensus 34 g~GTlYIa~s~LsWl~~~~akGfSvey~~IsLHaiS 69 (216)
T KOG3238|consen 34 GTGTLYIAESTLSWLSTSGAKGFSVEYPTISLHAIS 69 (216)
T ss_pred ccceEEEecceEEeeecccccceeeecceeEEEeee
Confidence 4699999999999998554333333 34455444
No 90
>KOG1572|consensus
Probab=21.77 E-value=71 Score=34.00 Aligned_cols=46 Identities=26% Similarity=0.533 Sum_probs=31.7
Q ss_pred HHhcCCcEEEEeCCCCCCCcchHHHHHHHHhhhhhHHHHhHHH-HHHHhhhhcCc
Q psy1514 483 KVENHKTSVLVHCSDGWDRTAQLTALAMLLLDPYYRTIKGFEV-LIEKEWLSFGH 536 (760)
Q Consensus 483 ~l~~~~~sVLVhcsdGwDrT~qvssLaql~LDPyyRTi~GF~~-LIEKEW~sfGH 536 (760)
.|+.++.++||||..|--||..|..-. |-++|.++ -|=-|++.|-+
T Consensus 143 lld~~N~P~Lihc~rGkhRtg~lVgcl--------Rklq~W~lssil~Ey~~fa~ 189 (249)
T KOG1572|consen 143 LLDKRNYPILIHCKRGKHRTGCLVGCL--------RKLQNWSLSSILDEYLRFAG 189 (249)
T ss_pred HhcccCCceEEecCCCCcchhhhHHHH--------HHHhccchhHHHHHHHHhcc
Confidence 577788999999999999997665431 45555433 35556666554
No 91
>PLN02727 NAD kinase
Probab=21.51 E-value=88 Score=39.43 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=24.5
Q ss_pred HHHHHHHHH-hcCCcEEEEeCCCCCCCcchHHHHH
Q psy1514 476 GACRIVDKV-ENHKTSVLVHCSDGWDRTAQLTALA 509 (760)
Q Consensus 476 ~a~~ia~~l-~~~~~sVLVhcsdGwDrT~qvssLa 509 (760)
.....++.+ +....+||+||..|-|||.-++|.=
T Consensus 328 qVe~fa~~l~~slpkPVLvHCKSGarRAGamvA~y 362 (986)
T PLN02727 328 QVEKFASLVSDSSKKPIYLHSKEGVWRTSAMVSRW 362 (986)
T ss_pred HHHHHHHHHHhhcCCCEEEECCCCCchHHHHHHHH
Confidence 334445555 3345899999999999998777663
No 92
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=20.67 E-value=1.3e+02 Score=32.25 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=18.7
Q ss_pred ccCceeEEecCCCCCccccccc
Q psy1514 433 NHKTSVLVHCSDGWDRTAQIDE 454 (760)
Q Consensus 433 ~~~~svlvHcSdGwDrt~qls~ 454 (760)
..+..|+|||..|-.||.-+..
T Consensus 168 ~~g~~VaVHC~AGlGRTGtl~A 189 (241)
T PTZ00393 168 KNNRAVAVHCVAGLGRAPVLAS 189 (241)
T ss_pred hcCCeEEEECCCCCCHHHHHHH
Confidence 4677899999999999987654
No 93
>KOG0790|consensus
Probab=20.43 E-value=67 Score=37.02 Aligned_cols=18 Identities=39% Similarity=0.759 Sum_probs=15.0
Q ss_pred cEEEEeCCCCCCCcchHH
Q psy1514 489 TSVLVHCSDGWDRTAQLT 506 (760)
Q Consensus 489 ~sVLVhcsdGwDrT~qvs 506 (760)
.+|+||||-|-.||.-+-
T Consensus 452 gpIvVHCSAGIGrTGTfi 469 (600)
T KOG0790|consen 452 GPIVVHCSAGIGRTGTFI 469 (600)
T ss_pred CcEEEEccCCcCCcceEE
Confidence 399999999999995443
No 94
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function.
Probab=20.24 E-value=1.3e+02 Score=31.66 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=31.1
Q ss_pred CCCCeeEEEEEeceEEEEEecCCCCceEEEecccceeEEEEe
Q psy1514 43 YSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSRVEKV 84 (760)
Q Consensus 43 ~~~~i~GtL~lTnyrLiF~~~~~~~~~~~~IPL~~I~~Vek~ 84 (760)
+..+..|.+.|||=||+|...+. ...|||..|..|...
T Consensus 22 d~~W~~~rIiLs~~rlvl~~~~~----k~~Ipls~I~Di~~~ 59 (221)
T PF04283_consen 22 DGKWVKGRIILSNDRLVLAFNDG----KITIPLSSIEDIGVR 59 (221)
T ss_pred cCCcEEEEEEEecCEEEEEcCCC----eEEEecceeEecccc
Confidence 34689999999999999987332 468999999998863
No 95
>KOG1718|consensus
Probab=20.17 E-value=1.2e+02 Score=30.95 Aligned_cols=31 Identities=39% Similarity=0.529 Sum_probs=22.0
Q ss_pred HHHHHhcCCcEEEEeCCCCCCCcchHHHHHHH
Q psy1514 480 IVDKVENHKTSVLVHCSDGWDRTAQLTALAML 511 (760)
Q Consensus 480 ia~~l~~~~~sVLVhcsdGwDrT~qvssLaql 511 (760)
..+.++..|--+||||--|-.|.+-+| ||-|
T Consensus 86 ~I~~v~~~gG~TLvHC~AGVSRSAsLC-lAYL 116 (198)
T KOG1718|consen 86 KIHSVIMRGGKTLVHCVAGVSRSASLC-LAYL 116 (198)
T ss_pred HHHHHHhcCCcEEEEEccccchhHHHH-HHHH
Confidence 334444455789999999999998776 5433
Done!