RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1514
(760 letters)
>gnl|CDD|241511 cd13357, PH-GRAM_MTMR2_insect-like, Myotubularian related 2 protein
(MTMR2) Pleckstrin Homology-Glucosyltransferases,
Rab-like GTPase activators and Myotubularins (PH-GRAM)
domain. MTMR2 is a member of the myotubularin protein
phosphatase gene family. MTMR2 binds to phosphoinositide
lipids through its PH-GRAM domain, and can hydrolyze
phosphatidylinositol(3)-phosphate and
phosphatidylinositol(3,5)-biphosphate in vitro.
Mutations in MTMR2 are a cause of Charcot-Marie-Tooth
disease type 4B, an autosomal recessive demyelinating
neuropathy. The protein can self-associate and form
heteromers with MTMR5 and MTMR12. MTMR2 contains a
N-terminal PH-GRAM domain, a Rac-induced recruitment
domain (RID) domain, an active PTP domain, a
SET-interaction domain, a coiled-coil region, and a
C-terminal PDZ domain. Myotubularin-related proteins are
a subfamily of protein tyrosine phosphatases (PTPs) that
dephosphorylate D3-phosphorylated inositol lipids.
Mutations in this family cause the human neuromuscular
disorders myotubular myopathy and type 4B
Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs
5, 9-13) contain naturally occurring substitutions of
residues required for catalysis by PTP family enzymes.
Although these proteins are predicted to be
enzymatically inactive, they are thought to function as
antagonists of endogenous phosphatase activity or
interaction modules. Most MTMRs contain a N-terminal
PH-GRAM domain, a Rac-induced recruitment domain (RID)
domain, a PTP domain (which may be active or inactive),
a SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is part
of a larger motif with a pleckstrin homology (PH) domain
fold. The PH domain family possesses multiple functions
including the ability to bind phosphoinositides via its
beta1/beta2, beta3/beta4, and beta6/beta7 connecting
loops and to other proteins. However, no
phosphoinositide binding sites have been found for the
MTMRs to date. Members in this cd include Drosophila,
sea urchins, mosquitos, bees, ticks, and anemones.
Length = 148
Score = 253 bits (649), Expect = 1e-80
Identities = 101/164 (61%), Positives = 122/164 (74%), Gaps = 17/164 (10%)
Query: 15 QTSRPDDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVP 74
+ P++ LL GE Q A++VTYLCP+SGP RG L++TNYKLYFRS+D+E P++V+VP
Sbjct: 2 GLANPEEFTLLEGEKPQDIAKDVTYLCPFSGPVRGTLTITNYKLYFRSLDKEPPFIVDVP 61
Query: 75 LGVVSRVEKVGGQLSRGENSYGIELFCKDMRNLRFGHKQENHSRRNVFEKRFGHKQENHS 134
LGV+ RVEKVGG SRGENSYGIE+FCKDMRNL RF HKQENHS
Sbjct: 62 LGVIYRVEKVGGATSRGENSYGIEIFCKDMRNL-----------------RFAHKQENHS 104
Query: 135 RRNVFEKLQQYAFPLSHKLPIFAFEYTETFPENGWNIHEPIAEL 178
RR VFEKLQ YAFPLS+ LP+FAFEY E F ENGW +++P+AE
Sbjct: 105 RRLVFEKLQAYAFPLSNSLPLFAFEYKERFSENGWAVYDPVAEY 148
>gnl|CDD|241510 cd13356, PH-GRAM_MTMR2_mammal-like, Myotubularian related 2 protein
(MTMR2) Pleckstrin Homology-Glucosyltransferases,
Rab-like GTPase activators and Myotubularins (PH-GRAM)
domain. MTMR2 is a member of the myotubularin protein
phosphatase gene family. MTMR2 binds to phosphoinositide
lipids through its PH-GRAM domain, and can hydrolyze
phosphatidylinositol(3)-phosphate and
phosphatidylinositol(3,5)-biphosphate in vitro.
Mutations in MTMR2 are a cause of Charcot-Marie-Tooth
disease type 4B, an autosomal recessive demyelinating
neuropathy. The protein can self-associate and form
heteromers with MTMR5 and MTMR12. MTMR2 contains a
N-terminal PH-GRAM domain, a Rac-induced recruitment
domain (RID) domain, an active PTP domain, a
SET-interaction domain, a coiled-coil region, and a
C-terminal PDZ domain. Myotubularin-related proteins are
a subfamily of protein tyrosine phosphatases (PTPs) that
dephosphorylate D3-phosphorylated inositol lipids.
Mutations in this family cause the human neuromuscular
disorders myotubular myopathy and type 4B
Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs
5, 9-13) contain naturally occurring substitutions of
residues required for catalysis by PTP family enzymes.
Although these proteins are predicted to be
enzymatically inactive, they are thought to function as
antagonists of endogenous phosphatase activity or
interaction modules. Most MTMRs contain a N-terminal
PH-GRAM domain, a Rac-induced recruitment domain (RID)
domain, a PTP domain (which may be active or inactive),
a SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is part
of a larger motif with a pleckstrin homology (PH) domain
fold. The PH domain family possesses multiple functions
including the ability to bind phosphoinositides via its
beta1/beta2, beta3/beta4, and beta6/beta7 connecting
loops and to other proteins. However, no
phosphoinositide binding sites have been found for the
MTMRs to date.Members in this cd include mammals,
chickens, anoles, human body lice, and aphids.
Length = 144
Score = 201 bits (512), Expect = 7e-61
Identities = 83/158 (52%), Positives = 117/158 (74%), Gaps = 17/158 (10%)
Query: 20 DDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVS 79
++ PLLPGE I+ A++VTY+CP++G RG L+VTNY+LYF+S++R+ P+V++ LGV++
Sbjct: 2 EEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVIN 61
Query: 80 RVEKVGGQLSRGENSYGIELFCKDMRNLRFGHKQENHSRRNVFEKRFGHKQENHSRRNVF 139
RVEK+GG SRGENSYG+E+ CKD+RNL RF HK E +RR++F
Sbjct: 62 RVEKIGGASSRGENSYGLEIVCKDIRNL-----------------RFAHKPEGRTRRSIF 104
Query: 140 EKLQQYAFPLSHKLPIFAFEYTETFPENGWNIHEPIAE 177
E L +YAFP+S+ LP+FAFEY E FPENGW +++P+ E
Sbjct: 105 ENLMKYAFPVSNNLPLFAFEYKEVFPENGWKLYDPLLE 142
>gnl|CDD|241512 cd13358, PH-GRAM_MTMR1, Myotubularian related 1 protein (MTMR1)
Pleckstrin Homology-Glucosyltransferases, Rab-like
GTPase activators and Myotubularins (PH-GRAM) domain.
MTMR1 is a member of the myotubularin protein
phosphatase gene family. MTMR1 binds to phosphoinositide
lipids through its PH-GRAM domain, and can hydrolyze
phosphatidylinositol(3)-phosphate and
phosphatidylinositol(3,5)-biphosphate in vitro. MTMR1
contain a N-terminal PH-GRAM domain, a Rac-induced
recruitment domain (RID) domain, an active PTP domain, a
SET-interaction domain, a coiled-coil region, and a
C-terminal PDZ domain. Myotubularin-related proteins are
a subfamily of protein tyrosine phosphatases (PTPs) that
dephosphorylate D3-phosphorylated inositol lipids.
Mutations in this family cause the human neuromuscular
disorders myotubular myopathy and type 4B
Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs
5, 9-13) contain naturally occurring substitutions of
residues required for catalysis by PTP family enzymes.
Although these proteins are predicted to be
enzymatically inactive, they are thought to function as
antagonists of endogenous phosphatase activity or
interaction modules. Most MTMRs contain a N-terminal
PH-GRAM domain, a Rac-induced recruitment domain (RID)
domain, a PTP domain (which may be active or inactive),
a SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is part
of a larger motif with a pleckstrin homology (PH) domain
fold. The PH domain family possesses multiple functions
including the ability to bind phosphoinositides via its
beta1/beta2, beta3/beta4, and beta6/beta7 connecting
loops and to other proteins. However, no
phosphoinositide binding sites have been found for the
MTMRs to date.
Length = 153
Score = 196 bits (501), Expect = 4e-59
Identities = 76/160 (47%), Positives = 110/160 (68%), Gaps = 18/160 (11%)
Query: 20 DDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVS 79
++ PL PGE I+ ++V Y+CP+SG G L++T++KLYF+S++R+ P++++V LGV+S
Sbjct: 12 EEAPLFPGETIKAIVKDVMYICPFSGAVSGTLTITDFKLYFKSVERDPPFILDVNLGVIS 71
Query: 80 RVEKVGGQLSRGENSYGIELFCKDMRNLRFGHKQENHSRRNVFEKRFGHKQENHSRRNVF 139
RVEK+G Q S G+NS GIE+ CKDMRN RF +KQE S+ +F
Sbjct: 72 RVEKIGVQ-SHGDNSCGIEIVCKDMRNP-----------------RFAYKQEEQSKLEIF 113
Query: 140 EKLQQYAFPLSHKLPIFAFEYTETFPENGWNIHEPIAELK 179
E L ++AFPLSH LP+FAF Y E FP +GW +++P+AE K
Sbjct: 114 ENLSKHAFPLSHGLPLFAFSYKEKFPVDGWKVYDPVAEYK 153
>gnl|CDD|241509 cd13355, PH-GRAM_MTM1, Myotubularian 1 protein (MTM1) Pleckstrin
Homology-Glucosyltransferases, Rab-like GTPase
activators and Myotubularins (PH-GRAM) domain. MTM1 is
a member of the myotubularin protein phosphatase gene
family. It is required for muscle cell differentiation
and mutations in this gene have been identified as being
responsible for X-linked myotubular myopathy, a severe
congenital muscle disorder characterized by defective
muscle cell development. Since its initial discovery,
there have been an additional 14 myotubularin-related
proteins identified. MTM1 binds to phosphoinositide
lipids through its PH-GRAM domain, and can hydrolyze
phosphatidylinositol(3)-phosphate and
phosphatidylinositol(3,5)-biphosphate in vitro. The
protein can self-associate and form heteromers with
MTMR12. MTM1 contains a N-terminal PH-GRAM domain, a
Rac-induced recruitment domain (RID) domain, an active
PTP domain, a SET-interaction domain, and a C-terminal
coiled-coil region. Myotubularin-related proteins are a
subfamily of protein tyrosine phosphatases (PTPs) that
dephosphorylate D3-phosphorylated inositol lipids.
Mutations in this family cause the human neuromuscular
disorders myotubular myopathy and type 4B
Charcot-Marie-Tooth syndrome. The GRAM domain, found in
myotubularins, glucosyltransferases, and other putative
membrane-associated proteins, is part of a larger motif
with a pleckstrin homology (PH) domain fold. All MTMRs
contain a N-terminal PH-GRAM domain, a Rac-induced
recruitment domain (RID) domain, a PTP domain (which may
be active or inactive), a SET-interaction domain, and a
C-terminal coiled-coil region. In addition some members
contain DENN domain N-terminal to the PH-GRAM domain and
FYVE and PH domains C-terminal to the coiled-coil
region.
Length = 152
Score = 182 bits (463), Expect = 9e-54
Identities = 79/167 (47%), Positives = 110/167 (65%), Gaps = 22/167 (13%)
Query: 3 SEAQPSNNNEPIQTSRPDDLPLLPGE--IIQGFAREVTYLCPYSGPARGILSVTNYKLYF 60
+E+ + + ++ +D+P LPGE I +EV Y+CP++GP +G + +TNY+LYF
Sbjct: 6 NESIKRTSRDGLKMELLEDVPRLPGEERITD---KEVIYICPFNGPVKGRVYITNYRLYF 62
Query: 61 RSIDRETPYVVEVPLGVVSRVEKVGGQLSRGENSYGIELFCKDMRNLRFGHKQENHSRRN 120
RS++ + ++VPLGV+SR+EK+GG SRGENSYG+++ CKDMRNL
Sbjct: 63 RSLEADPVVTLDVPLGVISRIEKMGGASSRGENSYGLDITCKDMRNL------------- 109
Query: 121 VFEKRFGHKQENHSRRNVFEKLQQYAFPLSHKLPIFAFEYTETFPEN 167
RF KQE HSRR++FE L +YAFPLSH LP+FAF E FPEN
Sbjct: 110 ----RFALKQEGHSRRDIFEILTKYAFPLSHGLPLFAFLNEEKFPEN 152
>gnl|CDD|241377 cd13223, PH-GRAM_MTM-like, Myotubularian 1 and related proteins
Pleckstrin Homology-Glucosyltransferases, Rab-like
GTPase. MTM1, MTMR1, and MTMR2 are members of the
myotubularin protein phosphatase gene family. They
contain a N-terminal PH-GRAM domain, a Rac-induced
recruitment domain (RID) domain, an active PTP domain, a
SET-interaction domain, and a C-terminal coiled-coil
region. In addition MTMR1 (Myotubularian related 1
protein) and MTMR2 (Myotubularian related 2 protein)
contain a C-terminal PDZ domain. Mutations in MTMR2 are
a cause of Charcot-Marie-Tooth disease type 4B, an
autosomal recessive demyelinating neuropathy. The
protein can self-associate and form heteromers with
MTMR5 and MTMR12. Myotubularin-related proteins are a
subfamily of protein tyrosine phosphatases (PTPs) that
dephosphorylate D3-phosphorylated inositol lipids. The
GRAM domain, found in myotubularins,
glucosyltransferases, and other putative
membrane-associated proteins, is part of a larger motif
with a pleckstrin homology (PH) domain fold. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is part
of a larger motif with a pleckstrin homology (PH) domain
fold. The PH domain family possesses multiple functions
including the ability to bind phosphoinositides via its
beta1/beta2, beta3/beta4, and beta6/beta7 connecting
loops and to other proteins. However, no
phosphoinositide binding sites have been found for the
MTMRs to date.
Length = 94
Score = 176 bits (449), Expect = 1e-52
Identities = 63/91 (69%), Positives = 82/91 (90%)
Query: 34 AREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSRVEKVGGQLSRGEN 93
A++VTY+CP+SGP +G L +TNY+LYF+S++R+ P+V++VPLGV+SRVEKVGG SRGEN
Sbjct: 3 AKDVTYICPFSGPVKGTLYITNYRLYFKSLERDPPFVLDVPLGVISRVEKVGGASSRGEN 62
Query: 94 SYGIELFCKDMRNLRFGHKQENHSRRNVFEK 124
SYG+E+ CKDMRNLRF HKQENHSRR++FE
Sbjct: 63 SYGLEIVCKDMRNLRFAHKQENHSRRDIFET 93
>gnl|CDD|219103 pfam06602, Myotub-related, Myotubularin-related. This family
represents a region within eukaryotic
myotubularin-related proteins that is sometimes found
with pfam02893. Myotubularin is a dual-specific lipid
phosphatase that dephosphorylates phosphatidylinositol
3-phosphate and phosphatidylinositol (3,5)-bi-phosphate.
Mutations in gene encoding myotubularin-related proteins
have been associated with disease.
Length = 118
Score = 155 bits (395), Expect = 1e-44
Identities = 66/93 (70%), Positives = 77/93 (82%)
Query: 284 ARPRSRGRIPVLSWIHPESQATITRASQPLVGVGGKRCKEDERYIQMIMDANAQSHKLFI 343
A+ RSRGR+PVLSW HPE+ A I R SQPLVG GKRCKEDE+ +Q I ANAQS KL+I
Sbjct: 26 AKFRSRGRLPVLSWRHPENGAVIVRCSQPLVGFSGKRCKEDEKLLQAIRKANAQSRKLYI 85
Query: 344 MDARPSANAIANKAKGGGYESEESYQNAELVFL 376
+DARP NA+AN+AKGGGYE+EE+Y NAELVFL
Sbjct: 86 VDARPRVNALANRAKGGGYENEENYPNAELVFL 118
Score = 151 bits (384), Expect = 3e-43
Identities = 56/93 (60%), Positives = 72/93 (77%)
Query: 197 YEICDSYPTILAIPTQVTDEEIRVIAQFRSRGRIPVLSWIHPESQATITRASQPLVGVGG 256
YE+C +YP L +P ++D+E++ +A+FRSRGR+PVLSW HPE+ A I R SQPLVG G
Sbjct: 1 YELCPTYPAKLVVPKSISDDELKKVAKFRSRGRLPVLSWRHPENGAVIVRCSQPLVGFSG 60
Query: 257 KRCKEDERYIQMIMDANAQSHKLFIMDARPRSR 289
KRCKEDE+ +Q I ANAQS KL+I+DARPR
Sbjct: 61 KRCKEDEKLLQAIRKANAQSRKLYIVDARPRVN 93
>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases,
Rab-like GTPase activators and Myotubularins (PH-GRAM)
domain. Myotubularin-related proteins are a subfamily
of protein tyrosine phosphatases (PTPs) that
dephosphorylate D3-phosphorylated inositol lipids.
Mutations in this family cause the human neuromuscular
disorders myotubular myopathy and type 4B
Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs
5, 9-13) contain naturally occurring substitutions of
residues required for catalysis by PTP family enzymes.
Although these proteins are predicted to be
enzymatically inactive, they are thought to function as
antagonists of endogenous phosphatase activity or
interaction modules. Most MTMRs contain a N-terminal
PH-GRAM domain, a Rac-induced recruitment domain (RID)
domain, a PTP domain (which may be active or inactive),
a SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is part
of a larger motif with a pleckstrin homology (PH) domain
fold.
Length = 94
Score = 130 bits (328), Expect = 6e-36
Identities = 57/92 (61%), Positives = 75/92 (81%), Gaps = 2/92 (2%)
Query: 33 FAREVTYLCPY-SGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSRVEKVGGQLSRG 91
++VTY+CP+ GP G L +TNY+LYF+S +R++P ++VPLGV+SRVEKVGG S G
Sbjct: 2 EKKDVTYICPFHVGPVEGTLYLTNYRLYFKSKERDSPTELDVPLGVISRVEKVGGS-SSG 60
Query: 92 ENSYGIELFCKDMRNLRFGHKQENHSRRNVFE 123
ENSYG+E+ CKDMRNLRF KQE+HSRR++FE
Sbjct: 61 ENSYGLEITCKDMRNLRFAFKQEDHSRRDIFE 92
>gnl|CDD|206020 pfam13849, Y_phosphatase_m, Myotubularin Y_phosphatase-like. This
short region is highly conserved and seems to be common
to many myotubularin proteins with protein tyrosine
pyrophosphate activity. As the family has a number of
highly conserved residues such as histidine, cysteine,
glutamine and aspartate, it is possible that this
represents a catalytic core of the active enzymatic part
of the proteins.
Length = 55
Score = 128 bits (323), Expect = 1e-35
Identities = 44/55 (80%), Positives = 50/55 (90%)
Query: 489 TSVLVHCSDGWDRTAQLTALAMLLLDPYYRTIKGFEVLIEKEWLSFGHKFQQRIG 543
+SVLVHCSDGWDRT+QL++LA LLLDPYYRTI+GF+VLIEKEWLSFGH F R G
Sbjct: 1 SSVLVHCSDGWDRTSQLSSLAQLLLDPYYRTIEGFQVLIEKEWLSFGHPFSDRCG 55
>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins
and other putative membrane-associated proteins.
Length = 60
Score = 51.8 bits (125), Expect = 1e-08
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 23 PLLPGEIIQGFAREVTYLCPYS--GPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSR 80
L E + Y C S GP +G L ++NY+L FRS V +PL ++R
Sbjct: 1 KLPEEEKLIA-----DYSCYLSRTGPVQGRLYISNYRLCFRSNLPGKLTKVVIPLADITR 55
Query: 81 VEKVG 85
+EK
Sbjct: 56 IEKST 60
>gnl|CDD|214649 smart00404, PTPc_motif, Protein tyrosine phosphatase, catalytic
domain motif.
Length = 105
Score = 47.7 bits (114), Expect = 9e-07
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 477 ACRIVDKVENH---KTSVLVHCSDGWDRTAQLTALAMLLLDPYYRTIK 521
R V K N V+VHCS G RT A+ +LL +
Sbjct: 25 LLRAVKKNLNQSESSGPVVVHCSAGVGRTGTFVAIDILLQQLEAEAGE 72
Score = 35.0 bits (81), Expect = 0.022
Identities = 12/32 (37%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 424 ACRIVDKVENH---KTSVLVHCSDGWDRTAQI 452
R V K N V+VHCS G RT
Sbjct: 25 LLRAVKKNLNQSESSGPVVVHCSAGVGRTGTF 56
>gnl|CDD|214469 smart00012, PTPc_DSPc, Protein tyrosine phosphatase, catalytic
domain, undefined specificity. Protein tyrosine
phosphatases. Homologues detected by this profile and
not by those of "PTPc" or "DSPc" are predicted to be
protein phosphatases with a similar fold to DSPs and
PTPs, yet with unpredicted specificities.
Length = 105
Score = 47.7 bits (114), Expect = 9e-07
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 477 ACRIVDKVENH---KTSVLVHCSDGWDRTAQLTALAMLLLDPYYRTIK 521
R V K N V+VHCS G RT A+ +LL +
Sbjct: 25 LLRAVKKNLNQSESSGPVVVHCSAGVGRTGTFVAIDILLQQLEAEAGE 72
Score = 35.0 bits (81), Expect = 0.022
Identities = 12/32 (37%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 424 ACRIVDKVENH---KTSVLVHCSDGWDRTAQI 452
R V K N V+VHCS G RT
Sbjct: 25 LLRAVKKNLNQSESSGPVVVHCSAGVGRTGTF 56
>gnl|CDD|217271 pfam02893, GRAM, GRAM domain. The GRAM domain is found in in
glucosyltransferases, myotubularins and other putative
membrane-associated proteins.
Length = 60
Score = 45.7 bits (109), Expect = 1e-06
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 24 LLPGEIIQGFAREVTYLCPYS---GPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSR 80
L P E + Y C P +G L +TN +L FRS V+ +PL + R
Sbjct: 1 LPPEEKLIA-----DYSCYLQRPISPVQGRLYLTNNRLCFRSDKFGDLTVLVIPLADIER 55
Query: 81 VEKVG 85
VEK
Sbjct: 56 VEKEK 60
>gnl|CDD|241235 cd00900, PH-like, Pleckstrin homology-like domain. The PH-like
family includes the PH domain, both the Shc-like and
IRS-like PTB domains, the ran-binding domain, the EVH1
domain, a domain in neurobeachin and the third domain of
FERM. All of these domains have a PH fold, but lack
significant sequence similarity. They are generally
involved in targeting to protein to the appropriate
cellular location or interacting with a binding partner.
This domain family possesses multiple functions
including the ability to bind inositol phosphates and to
other proteins.
Length = 88
Score = 39.7 bits (93), Expect = 4e-04
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 8/91 (8%)
Query: 34 AREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSRVEKVGGQLSRGEN 93
V C RG L +T+ +L R + +++P+ + +V ++
Sbjct: 3 FSAVRVYCDGKKRGRGTLFITSNRLILRDKQDD-RLKLKIPISDIVKVNPSRA----SDS 57
Query: 94 SYGIELFCKDMRN-LRFGHKQENHSRRNVFE 123
+ L KD R L F K + + +
Sbjct: 58 DRALVLRLKDKRESLGFSFK--SKEEAVLIK 86
>gnl|CDD|241365 cd13211, PH-GRAM_MTMR9, Myotubularian (MTM) related 9 protein
(MTMR9) Pleckstrin Homology-Glucosyltransferases,
Rab-like GTPase activators and Myotubularins (PH-GRAM)
domain. MTMR9 is a catalytically inactive phosphatase
that plays a role as an adapter for the phosphatase
myotubularin to regulate myotubularintracellular
location. It contains a Gly residue instead of a
conserved Cys residue in the dsPTPase catalytic loop
which renders it catalytically inactive as a
phosphatase. MTMR9 contains an N-terminal PH-GRAM
domain, a Rac-induced recruitment domain (RID) domain,
an inactive PTP domain, a SET interaction domain, and a
C-terminal coiled-coil region. Myotubularin-related
proteins are a subfamily of protein tyrosine
phosphatases (PTPs) that dephosphorylate
D3-phosphorylated inositol lipids. Mutations in this
family cause the human neuromuscular disorders
myotubular myopathy and type 4B Charcot-Marie-Tooth
syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain
naturally occurring substitutions of residues required
for catalysis by PTP family enzymes. Although these
proteins are predicted to be enzymatically inactive,
they are thought to function as antagonists of
endogenous phosphatase activity or interaction modules.
Most MTMRs contain a N-terminal PH-GRAM domain, a
Rac-induced recruitment domain (RID) domain, a PTP
domain (which may be active or inactive), a
SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is part
of a larger motif with a pleckstrin homology (PH) domain
fold. The PH domain family possesses multiple functions
including the ability to bind phosphoinositides via its
beta1/beta2, beta3/beta4, and beta6/beta7 connecting
loops and to other proteins. However, no
phosphoinositide binding sites have been found for the
MTMRs to date.
Length = 159
Score = 34.9 bits (81), Expect = 0.063
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 156 FAFEYTETFP--ENGWNIHEPIAELKRMGVPNDMWKISRINENYEICDS 202
+ F Y F E+GW +P +E R+ D W+ S +N + +C S
Sbjct: 111 YPFFYRPMFEVLEDGWTAFDPESEFARLLAETDDWRRSSVNNKFSVCCS 159
>gnl|CDD|222063 pfam13350, Y_phosphatase3, Tyrosine phosphatase family. This
family is closely related to the pfam00102 and pfam00782
families.
Length = 163
Score = 34.4 bits (80), Expect = 0.095
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 479 RIVDKVENHKTSVLVHCSDGWDRTAQLTALAMLLLD 514
+++ + + VL HC+ G DRT AL + LL
Sbjct: 114 ALLELLADPDGPVLFHCTAGKDRTGVAAALLLSLLG 149
Score = 30.2 bits (69), Expect = 2.1
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 377 DIHNIHVMRESQRKLKELCFPQIDEARWFSGVDSTY--WLKHIKCILAGACRIVDKVENH 434
++ V+ + ++L D A + + Y + +++ + +
Sbjct: 67 TYVHLPVLGDDASSPEDLARLLKDPADAVAFMADLYRDLVTDAAAY----RALLELLADP 122
Query: 435 KTSVLVHCSDGWDRT 449
VL HC+ G DRT
Sbjct: 123 DGPVLFHCTAGKDRT 137
>gnl|CDD|215717 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase.
Length = 233
Score = 30.3 bits (69), Expect = 3.1
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 479 RIVDKVENHK-----TSVLVHCSDGWDRTAQLTALAMLL 512
++ KV + ++VHCS G RT A+ +LL
Sbjct: 154 DLIRKVRKSQADPRSGPIVVHCSAGVGRTGTFIAIDILL 192
>gnl|CDD|161702 TIGR00090, iojap_ybeB, iojap-like ribosome-associated protein.
This model describes a widely distributed family of
bacterial proteins related to iojap from plants. It
includes YbeB from E. coli. The gene iojap is a
pattern-striping gene in maize, reflecting a chloroplast
development defect in some cells. More recent work in
bacteria suggests that the bacterial iojap-related
protein physically associates with ribosomes. The
function remains unknown [Unknown function, General].
Length = 99
Score = 28.6 bits (65), Expect = 3.3
Identities = 9/49 (18%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 350 ANAIANKAKGGGYE--SEESYQNAELVFLDIHNI--HVMRESQRKLKEL 394
A+ + + K G + E + + V +D+ ++ H+ + R+ +L
Sbjct: 47 ADNVEEELKEAGLKPLGVEGLEEGDWVLVDLGDVVVHIFQPEAREFYDL 95
>gnl|CDD|240350 PTZ00296, PTZ00296, choline kinase; Provisional.
Length = 442
Score = 30.6 bits (69), Expect = 3.8
Identities = 63/287 (21%), Positives = 106/287 (36%), Gaps = 43/287 (14%)
Query: 439 LVHCSDGWDRTAQIDEARWFSGVDSTYWLKHIKCILAGACRIVDKVENHKTSVLVHCSDG 498
L++ G +I+E W G IL G ++ K H S H +
Sbjct: 175 LLNTFSGG----RIEE--WLYGDPLRIDDLKNPSILIGIANVLGKF--HTLSRKRHLPEH 226
Query: 499 WDRTA---------QLTALAMLLLDPYYRTIKGFEVLIEKEW-LSFGHKFQQRIGHGDD- 547
WDRT + ++ Y R I + + E E + F + + +D
Sbjct: 227 WDRTPCIFKMMEKWKNQLSKYKNIEKYQRDIHKY--IKESEKFIKFMKVYSKSDNLANDI 284
Query: 548 --KHSDADRSPVF-----LQLIDAVWQVTTMFRHAFEFNEHFLITILDHLYSCRFGTFLF 600
H+D + + L+LID ++ + A + F+ T +D YS F F
Sbjct: 285 VFCHNDLQENNIINTNKCLRLID--FEYSGYNFLATDIANFFIETTID--YSVSHYPF-F 339
Query: 601 NSDRERNQENMKQR---TVSLWSYINSSLDLYKNPLYFPQ-LHVLEPIASMRHIKLWKGL 656
D+++ ++ T L +Y++ SL + NP Q L +E A H+ LW G
Sbjct: 340 AIDKKKYISYENRKLFITAYLSNYLDKSL-VVPNPKIIDQILEAVEVQALGAHL-LW-GF 396
Query: 657 YCRWNPSMRAQDPIYQRTRELLVLKEQLDKSSEECRKELKARMPRTY 703
W+ Q Y L KE+ E+ + + +TY
Sbjct: 397 ---WSIIRGYQTKSYNEFDFFLYAKERFKMYDEQKEYLISNNIIKTY 440
>gnl|CDD|197474 smart00021, DAX, Domain present in Dishevelled and axin. Domain
of unknown function.
Length = 83
Score = 28.1 bits (63), Expect = 4.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 48 RGILSVTNYKLYFRSIDRETPYVV 71
+ +L+ NYK YF+S+D + VV
Sbjct: 34 KEVLTKKNYKYYFKSMDDDFGGVV 57
>gnl|CDD|221647 pfam12578, 3-PAP, Myotubularin-associated protein. This domain
family is found in eukaryotes, and is typically between
115 and 138 amino acids in length. Myotubularin is a
dual-specific phosphatase that dephosphorylates
phosphatidylinositol 3-phosphate and
phosphatidylinositol (3,5)-bisphosphate. 3-PAP is a
catalytically inactive member of the myotubularin gene
family, which coprecipitates lipid phosphatidylinositol
3-phosphate-3-phosphatase activity from lysates of human
platelets.
Length = 93
Score = 28.2 bits (63), Expect = 4.4
Identities = 9/35 (25%), Positives = 11/35 (31%)
Query: 628 LYKNPLYFPQLHVLEPIASMRHIKLWKGLYCRWNP 662
L +L P + LW Y RW P
Sbjct: 15 LSATWSSRDLHQLLLPQQLGLDLSLWSQCYLRWIP 49
>gnl|CDD|238006 cd00047, PTPc, Protein tyrosine phosphatases (PTP) catalyze the
dephosphorylation of phosphotyrosine peptides; they
regulate phosphotyrosine levels in signal transduction
pathways. The depth of the active site cleft renders the
enzyme specific for phosphorylated Tyr (pTyr) residues,
instead of pSer or pThr. This family has a distinctive
active site signature motif, HCSAGxGRxG. Characterized
as either transmembrane, receptor-like or
non-transmembrane (soluble) PTPs. Receptor-like PTP
domains tend to occur in two copies in the cytoplasmic
region of the transmembrane proteins, only one copy may
be active.
Length = 231
Score = 29.9 bits (68), Expect = 4.4
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 479 RIVDKV--ENHKTSVLVHCSDGWDRTAQLTALAMLL 512
R V K + ++VHCS G RT A+ +LL
Sbjct: 155 RKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILL 190
>gnl|CDD|214550 smart00194, PTPc, Protein tyrosine phosphatase, catalytic domain.
Length = 259
Score = 29.5 bits (67), Expect = 5.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 479 RIVDKVENHKTS-VLVHCSDGWDRTAQLTALAMLL 512
R V K ++ T ++VHCS G RT A+ +LL
Sbjct: 184 RAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILL 218
>gnl|CDD|214551 smart00195, DSPc, Dual specificity phosphatase, catalytic domain.
Length = 138
Score = 28.4 bits (64), Expect = 7.2
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 474 LAGACRIVDKVENHKTSVLVHCSDGWDRTAQLTA 507
A ++ E+ VLVHC G R+A L
Sbjct: 64 FPEAVEFIEDAESKGGKVLVHCQAGVSRSATLII 97
>gnl|CDD|171495 PRK12434, PRK12434, tRNA pseudouridine synthase A; Reviewed.
Length = 245
Score = 29.3 bits (66), Expect = 7.4
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 116 HSRRNVFEKRFGHKQENHSRRNVFEKLQQYAFPLSHKLPIFAFE 159
H+R NV K + +K N NVF +++Y+ ++ KL + A +
Sbjct: 101 HARYNVKSKTYLYKIWNEKFHNVF--MRKYSMHVNEKLDVKAMK 142
>gnl|CDD|151587 pfam11143, DUF2919, Protein of unknown function (DUF2919). This
bacterial family of proteins has no known function. Some
members are annotated as YfeZ however this cannot be
confirmed.
Length = 149
Score = 28.3 bits (64), Expect = 7.8
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 557 VFLQLIDAVWQVTTMFRHAFEFNEHFLITILDHLYSCRFGTFLFNSDR 604
+ L ++D V + ++ F+ + L L +L S R
Sbjct: 95 LLLLVVDLVLLLYRLYLQHGLFSW---LLALTLLLLLWALIYLLKSRR 139
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.421
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 38,979,394
Number of extensions: 3809397
Number of successful extensions: 2891
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2882
Number of HSP's successfully gapped: 38
Length of query: 760
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 656
Effective length of database: 6,324,786
Effective search space: 4149059616
Effective search space used: 4149059616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (27.9 bits)