RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1514
(760 letters)
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex,
hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3
PDB: 1m7r_A
Length = 657
Score = 480 bits (1235), Expect = e-161
Identities = 339/706 (48%), Positives = 425/706 (60%), Gaps = 133/706 (18%)
Query: 8 SNNNEPIQTSRPDDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRET 67
E + + ++ PLLPGE I+ A++VTY+CP++G RG L+VTNY+LYF+S++R+
Sbjct: 65 RVLRESNKLAEMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDP 124
Query: 68 PYVVEVPLGVVSRVEKVGGQLSRGENSYGIELFCKDMRNLRFGHKQENHSRRNVFEKRFG 127
P+V++ LGV++RVEK+GG SRGENSYG+E CKD+RNLRF HK E +RR++F
Sbjct: 125 PFVLDASLGVINRVEKIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIF----- 179
Query: 128 HKQENHSRRNVFEKLQQYAFPLSHKLPIFAFEYTETFPENGWNIHEPIAELKRMGVPNDM 187
E L +YAFP+S+ A + P +
Sbjct: 180 ------------ENLMKYAFPVSN-------------------NLPLFAFEYKEVFPENG 208
Query: 188 WKISRINENYEICDSYPTILAIPTQVTDEEIRVIAQFRSRGRIPVLSWIHPESQATITRA 247
WK+ Y R IP SW +
Sbjct: 209 WKLYDPLLEYR----------------------------RQGIPNESWRITKINERYELC 240
Query: 248 SQPLVGVGGKRCKEDERYIQMIMDANAQSHKLFIMDARPRSRGRIPVLSWIHPESQATIT 307
+ DE ++ A RSRGRIPVLSWIHPESQATIT
Sbjct: 241 DTYPALLVVPANIPDEELKRV---------------ASFRSRGRIPVLSWIHPESQATIT 285
Query: 308 RASQPLVGVGGKRCKEDERYIQMIMDANAQSHKLFIMDARPSANAIANKAKGGGYESEES 367
R SQP+VGV GKR KEDE+Y+Q IMD+NAQSHK+FI DARPS NA+ANKAKGGGYESE++
Sbjct: 286 RCSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDA 345
Query: 368 YQNAELVFLDIHNIHVMRESQRKLKELCFPQIDEARWFSGVDSTYWLKHIKCILAGACRI 427
YQNAELVFLDIHNIHVMRES RKLKE+ +P I+E W S ++ST+WL+HIK ILAGA RI
Sbjct: 346 YQNAELVFLDIHNIHVMRESLRKLKEIVYPNIEETHWLSNLESTHWLEHIKLILAGALRI 405
Query: 428 VDKVENHKTSVLVHCSDGWDRTAQIDEARWFSGVDSTYWLKHIKCILAGACRIVDKVENH 487
DKVE+ KTSV+VH SDGWDRTAQ+
Sbjct: 406 ADKVESGKTSVVVHSSDGWDRTAQL----------------------------------- 430
Query: 488 KTSVLVHCSDGWDRTAQLTALAMLLLDPYYRTIKGFEVLIEKEWLSFGHKFQQRIGHGDD 547
T+LAML+LD YYRTI+GFEVL+EKEWLSFGH+FQ R+GHGD
Sbjct: 431 ------------------TSLAMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQLRVGHGDK 472
Query: 548 KHSDADRSPVFLQLIDAVWQVTTMFRHAFEFNEHFLITILDHLYSCRFGTFLFNSDRERN 607
H+DADRSPVFLQ ID VWQ+T F AFEFNE+FLITILDHLYSC FGTFL NS+++R
Sbjct: 473 NHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRG 532
Query: 608 QENMKQRTVSLWSYINSSLDLYKNPLYFPQL-HVLEPIASMRHIKLWKGLYCRWNPSMRA 666
+EN+ +RTVSLWSYINS L+ + NPLY HVL P+ASMRH++LW G Y RWNP M+
Sbjct: 533 KENLPKRTVSLWSYINSQLEDFTNPLYGSYSNHVLYPVASMRHLELWVGYYIRWNPRMKP 592
Query: 667 QDPIYQRTRELLVLKEQLDKSSEECRKELKARMPRTYIRPNIPKNS 712
Q+PI+ R +ELL + +L K EE ++E+ R + R + P
Sbjct: 593 QEPIHNRYKELLAKRAELQKKVEELQREISNRSTSSSERASSPAQC 638
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex,
hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8
c.45.1.3 PDB: 1zvr_A*
Length = 528
Score = 461 bits (1187), Expect = e-155
Identities = 320/658 (48%), Positives = 393/658 (59%), Gaps = 133/658 (20%)
Query: 17 SRPDDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLG 76
+ ++ PLLPGE I+ A++VTY+CP++G RG L+VTNY+LYF+S++R+ P+V++ LG
Sbjct: 2 ASMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLG 61
Query: 77 VVSRVEKVGGQLSRGENSYGIELFCKDMRNLRFGHKQENHSRRNVFEKRFGHKQENHSRR 136
V++RVEK+GG SRGENSYG+E CKD+RNLR F HK E +RR
Sbjct: 62 VINRVEKIGGASSRGENSYGLETVCKDIRNLR-----------------FAHKPEGRTRR 104
Query: 137 NVFEKLQQYAFPLSHKLPIFAFEYTETFPENGWNIHEPIAELKRMGVPNDMWKISRINEN 196
+ IF FP + N A + P + WK+
Sbjct: 105 S-----------------IFENLMKYAFPVS--NNLPLFAFEYKEVFPENGWKLYDPLLE 145
Query: 197 YEICDSYPTILAIPTQVTDEEIRVIAQFRSRGRIPVLSWIHPESQATITRASQPLVGVGG 256
Y R IP SW + +
Sbjct: 146 YR----------------------------RQGIPNESWRITKINERYELCDTYPALLVV 177
Query: 257 KRCKEDERYIQMIMDANAQSHKLFIMDARPRSRGRIPVLSWIHPESQATITRASQPLVGV 316
DE ++ A RSRGRIPVLSWIHPESQATITR SQP+VGV
Sbjct: 178 PANIPDEELKRV---------------ASFRSRGRIPVLSWIHPESQATITRCSQPMVGV 222
Query: 317 GGKRCKEDERYIQMIMDANAQSHKLFIMDARPSANAIANKAKGGGYESEESYQNAELVFL 376
GKR KEDE+Y+Q IMD+NAQSHK+FI DARPS NA+ANKAKGGGYESE++YQNAELVFL
Sbjct: 223 SGKRSKEDEKYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFL 282
Query: 377 DIHNIHVMRESQRKLKELCFPQIDEARWFSGVDSTYWLKHIKCILAGACRIVDKVENHKT 436
DIHNIHVMRES RKLKE+ +P I+E W S ++ST+WL+HIK ILAGA RI DKVE+ KT
Sbjct: 283 DIHNIHVMRESLRKLKEIVYPNIEETHWLSNLESTHWLEHIKLILAGALRIADKVESGKT 342
Query: 437 SVLVHCSDGWDRTAQIDEARWFSGVDSTYWLKHIKCILAGACRIVDKVENHKTSVLVHCS 496
SV+VH SDGWDRTAQ+
Sbjct: 343 SVVVHSSDGWDRTAQL-------------------------------------------- 358
Query: 497 DGWDRTAQLTALAMLLLDPYYRTIKGFEVLIEKEWLSFGHKFQQRIGHGDDKHSDADRSP 556
T+LAML+LD YYRTI+GFEVL+EKEWLSFGH+FQ R+GHGD H+DADRSP
Sbjct: 359 ---------TSLAMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHADADRSP 409
Query: 557 VFLQLIDAVWQVTTMFRHAFEFNEHFLITILDHLYSCRFGTFLFNSDRERNQENMKQRTV 616
VFLQ ID VWQ+T F AFEFNE+FLITILDHLYSC FGTFL NS+++R +EN+ +RTV
Sbjct: 410 VFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKRTV 469
Query: 617 SLWSYINSSLDLYKNPLYFPQL-HVLEPIASMRHIKLWKGLYCRWNPSMRAQDPIYQR 673
SLWSYINS L+ + NPLY HVL P+ASMRH++LW G Y RWNP A + +
Sbjct: 470 SLWSYINSQLEDFTNPLYGSYSNHVLYPVASMRHLELWVGYYIRWNPRAAALEHHHHH 527
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Length = 512
Score = 400 bits (1029), Expect = e-132
Identities = 182/638 (28%), Positives = 279/638 (43%), Gaps = 145/638 (22%)
Query: 37 VTYLCPYS---GPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVSRVEKVGGQLSRGEN 93
V L +S G L +T L F ++ ++ ++ VEK+ S
Sbjct: 12 VKLLDRFSTSNKSLTGTLYLTATHLLFIDSHQKETWI---LHHHIASVEKLALTTS---- 64
Query: 94 SYGIELFCKDMRNLRFGHKQENHSRRNVFEKRFGHKQENHSRRNVFEKLQQYAFPLSHKL 153
+ + CK+ R + F +E +++ L Q + ++
Sbjct: 65 GCPLVIQCKNFRTVHFIVPRERD------------------CHDIYNSLLQLSKQAKYE- 105
Query: 154 PIFAFEYTETFPENGWNIHEPIAELKRMGVPNDMWKISRINENYEICDSYPTILAIPTQV 213
++AF Y ++ W++ + E Y+
Sbjct: 106 DLYAFSYNPKQNDSE---------------RLQGWQLIDLAEEYK--------------- 135
Query: 214 TDEEIRVIAQFRSRGRIPVLSWIHPESQATITRASQPLVGVGGKRCKEDERYIQMIMDAN 273
R +P W + K C+ Y + +
Sbjct: 136 -------------RMGVPNSHWQLSD------------ANRDYKICET---YPRELYVPR 167
Query: 274 AQSHKLFIMDARPRSRGRIPVLSWIHPESQATITRASQPLVGVGGKRCKEDERYIQMIMD 333
S + + ++ RS+GR PVLS+ H + +A I R SQPL G RC EDE +Q I
Sbjct: 168 IASKPIIVGSSKFRSKGRFPVLSYYHQDKEAAICRCSQPLSGFS-ARCLEDEHLLQAISK 226
Query: 334 ANAQSHKLFIMDARPSANAIANKAKGGGYESEESYQNAELVFLDIHNIHVMRESQRKLKE 393
AN + +++MD RP NA+AN+A G GYE+E++Y N F+ I NIHVMR S +KL E
Sbjct: 227 ANPVNRYMYVMDTRPKLNAMANRAAGKGYENEDNYSNIRFQFVGIENIHVMRSSLQKLLE 286
Query: 394 LCFPQIDEARWFSGVDSTYWLKHIKCILAGACRIVDKVENHKTSVLVHCSDGWDRTAQID 453
+ + +
Sbjct: 287 VNGTK----------------------------------------------------GLS 294
Query: 454 EARWFSGVDSTYWLKHIKCILAGACRIVDKVENHKTSVLVHCSDGWDRTAQLTALAMLLL 513
++SG++S+ WL+HIK ++ A + + SVLVHCSDGWDRT+Q+ +L LLL
Sbjct: 295 VNDFYSGLESSGWLRHIKAVMDAAVFLAKAITVENASVLVHCSDGWDRTSQVCSLGSLLL 354
Query: 514 DPYYRTIKGFEVLIEKEWLSFGHKFQQRIGHGDDKHSDADRSPVFLQLIDAVWQVTTMFR 573
D YYRTIKGF VLIEK+W+SFGHKF +R G D + SPVF Q ++ VW +T F
Sbjct: 355 DSYYRTIKGFMVLIEKDWISFGHKFSERCGQLDGDPK--EVSPVFTQFLECVWHLTEQFP 412
Query: 574 HAFEFNEHFLITILDHLYSCRFGTFLFNSDRERNQENMKQRTVSLWSYINSSLDLYKNPL 633
AFEF+E FL+ I +H++SC+FG FL N +ER + +K++T SLW ++ Y NPL
Sbjct: 413 QAFEFSEAFLLQIHEHIHSCQFGNFLGNCQKEREELKLKEKTYSLWPFLLEDQKKYLNPL 472
Query: 634 YFPQLH---VLEPIASMRHIKLWKGLYCRWNPSMRAQD 668
Y + H VLEP + K W+ +Y +++ +
Sbjct: 473 YSSESHRFTVLEPNTVSFNFKFWRNMYHQFDRTAHHHH 510
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 2e-08
Identities = 91/619 (14%), Positives = 190/619 (30%), Gaps = 170/619 (27%)
Query: 197 YEICDSYPTILAIPTQVTDEEIRVIAQFRSR-GRIPVLSWIHPESQATITRASQPLVGVG 255
++ D +IL + EEI I + L W Q +
Sbjct: 36 KDVQDMPKSIL------SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV---------- 79
Query: 256 GKRCKEDERYIQMIMDANAQSHKLFIMDARPRSRGRIPVLSWIHPESQAT-ITRASQPLV 314
+++++ ++ N + F+M ++ R P + Q + +Q
Sbjct: 80 -------QKFVEEVLRINYK----FLMS-PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 315 GVGGKRCKEDERYIQMIMDANAQSHKLFIMDARPSANAIANKAKGGGYES--EESYQNAE 372
R + + A +++ RP+ N + + G G + + +
Sbjct: 128 KYNVSRLQP----YLKLRQA--------LLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 373 L-------VF-LDIHNIHVMRESQRKLKELCFPQIDEARWFSGVDSTYWLKHIKCILAGA 424
+ +F L++ N + L++L + QID W S D + +K +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY-QIDP-NWTSRSDHSSNIKLRIHSIQAE 233
Query: 425 CRIVDKVENHKTSVLVHCSDGWDRTAQIDEARWFSGVDSTYWLKHIKC---ILAGACRIV 481
R + K + ++ +LV + + A+ A F+ + C + ++
Sbjct: 234 LRRLLKSKPYENCLLV-LLNVQN--AKAWNA--FN----------LSCKILLTTRFKQVT 278
Query: 482 DKVENHKTS--VLVHCSDGWDRTAQLTALAMLL------LDPYYRTIKGFEVLIEKEWLS 533
D + T+ L H S + L L L T + I
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI------ 332
Query: 534 FGHKFQQRIGHGDD-KHSDADRSPVFLQLIDAVWQV--TTMFRHAFE----FNEHFLIT- 585
+ + D+ KH + D+ +I++ V +R F+ F I
Sbjct: 333 IAESIRDGLATWDNWKHVNCDK---LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 586 -----------------ILDHLYSCRFGTFLFNSDRERNQENMKQRTVSLWSYINSSLDL 628
+++ L+ S E+ K+ T+S+ S L+L
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHK--------YSLVEKQP---KESTISIPSI---YLEL 435
Query: 629 YKNPLYFPQLH--VLEPIASMRHIKLWKGLYCRWNPSMRAQDP-IYQ------------- 672
LH +++ H + K + + D Y
Sbjct: 436 KVKLENEYALHRSIVD------HYNIPKT-FDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 673 ---RTRELLV----LKEQL--DKSSEECRKELKA-----RMPRTYIRPNIPKNSRIVG-- 716
R + + L++++ D ++ + + + YI N PK R+V
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
Query: 717 --FERTTGQ-IIRGMSQRI 732
F + +I +
Sbjct: 549 LDFLPKIEENLICSKYTDL 567
Score = 36.4 bits (83), Expect = 0.045
Identities = 21/193 (10%), Positives = 63/193 (32%), Gaps = 53/193 (27%)
Query: 580 EHFLITILDHLYSCRFGTFLFNSDRERNQENMKQRTVSLWSYINSSLDLYKNPLYFPQLH 639
+ F+ +L Y FL + + +Q ++ YI LY + F + +
Sbjct: 80 QKFVEEVLRINYK-----FLMSPIKTEQ----RQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 640 V--LEPIASMRHIKLWKGLYCRWNPSMRAQDPIYQRTRELLVL-------KEQLDKSSEE 690
V L+P +R + L + +++ K + + +
Sbjct: 131 VSRLQPYLKLR-----QALL-------ELRPAKN------VLIDGVLGSGKTWV--ALDV 170
Query: 691 CR-KELKARMPRT--YIRPNIPKNSRIVGFERTTGQIIRGMSQ---RIESQNAKNCEHTY 744
C +++ +M ++ + + ++ + + +I+ +H+
Sbjct: 171 CLSYKVQCKMDFKIFWLN---------LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 745 SPCISYSYLENFI 757
+ + ++ +
Sbjct: 222 NIKLRIHSIQAEL 234
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 2e-07
Identities = 96/641 (14%), Positives = 171/641 (26%), Gaps = 280/641 (43%)
Query: 16 TSRPDDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFR-SIDRETPYVVEVP 74
++RP L L G + E L P + +F S +E + +P
Sbjct: 5 STRP--LTLSHGSL------EHVLLVPTA-------------SFFIASQLQEQ-FNKILP 42
Query: 75 LGVVSRVEKVGGQLSRGENSYGIELFCKDMRNLRF-GH------KQENHSRRNV------ 121
E E + EL +F G+ + V
Sbjct: 43 ----EPTEGFAAD---DEPTTPAELV------GKFLGYVSSLVEPSKVGQFDQVLNLCLT 89
Query: 122 -FEKRFGHKQENHSR-------------------RNVFEKLQQYAFPLSHKLP------- 154
FE + + H+ +N P K
Sbjct: 90 EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 155 ------IFAFEYTETFPENGWNIHEPIAELKRMGVPNDMWKISRINENYEICDSYPTILA 208
+ A F G N + EL+ ++ +Y ++
Sbjct: 150 GEGNAQLVA-----IFGGQG-NTDDYFEELR------------------DLYQTYHVLVG 185
Query: 209 IPTQVTDEEIRVIAQ-------FRSRGRIPVLSWI-HPESQ------ATITRASQPLVGV 254
+ + E + + + ++G + +L W+ +P + +I S PL+GV
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQG-LNILEWLENPSNTPDKDYLLSIP-ISCPLIGV 243
Query: 255 GGKRCKEDERYIQMIMDAN----AQSHKLFIMDARPRSRGR------------------- 291
IQ+ A+ A+ + R +G
Sbjct: 244 -----------IQL---AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 292 ----------IPVLSWIHPESQ---------ATITRASQ--------PLVGVGGKRCKED 324
I VL +I +I S P++ + ++
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 325 ERYIQMIMDANA---QSHKLFIMDARPSANAIANKAK----GGGYESEESYQNAELVFLD 377
+ Y+ N+ ++ I ++ N AK G +S L L+
Sbjct: 350 QDYVN---KTNSHLPAGKQVEI--------SLVNGAKNLVVSGPPQS--------LYGLN 390
Query: 378 IHNIHVMRE--------------SQRKLK-ELCF-PQIDEARWFSGVDSTYWLKHIKCIL 421
+ +R+ S+RKLK F P V S + H +L
Sbjct: 391 LT----LRKAKAPSGLDQSRIPFSERKLKFSNRFLP----------VASPF---HSH-LL 432
Query: 422 AGACRIVDKVENHKTSVLVHCSDGWDRTAQIDEARW-------FSGVDSTYWLKHIKCIL 474
A D + D + F G D L+ + +
Sbjct: 433 VPA---SDLIN----------KDLVKNNVSFNAKDIQIPVYDTFDGSD----LRVLSGSI 475
Query: 475 AGACRIVDKVENHKTSVLVHCSDGWDRTAQLTALAMLLLDP 515
+ RIVD + + V W+ T Q A +L P
Sbjct: 476 SE--RIVDCI----IRLPVK----WETTTQFKATHILDFGP 506
Score = 50.8 bits (121), Expect = 2e-06
Identities = 84/569 (14%), Positives = 152/569 (26%), Gaps = 232/569 (40%)
Query: 282 MDA---RPR--SRGRI------PVLSWIHPESQ------ATITRASQPLVGVGGKRCKED 324
MDA RP S G + P S+ SQ + ++ +D
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFI-ASQLQEQFNKILPEPTEGFAA-------DD 52
Query: 325 E---------RYIQMIMDANAQSHKLFIMDARPSANAIANKAKGGGYES--EESYQNAEL 373
E +++ + S G ++ E
Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKV-------------------GQFDQVLNLCLTEFEN 93
Query: 374 VFLDIHNIHVMRESQRKLKELCFPQIDEARWFSGVDSTYWLKHIKCILAGACRIVDK-VE 432
+L+ ++IH + Q ++ + T L IK + A + + +
Sbjct: 94 CYLEGNDIHALAAK--------LLQENDTT----LVKTKEL--IKNYIT-ARIMAKRPFD 138
Query: 433 NHKTSVLVHCSDGWDRTAQIDEARWFS-----GVDSTYW--LKHIKCILAGACRIVDKVE 485
S L R A+ + G Y+ L+ +
Sbjct: 139 KKSNSALF-------RAVGEGNAQLVAIFGGQGNTDDYFEELRDL--------------- 176
Query: 486 NHKTS-VLVHCSDGWDRTAQ-LTALAMLLLD--PYYRTIKGFEVLIEKEWLSFGHKFQQR 541
++T VLV D +A+ L+ L LD + +G +L EWL
Sbjct: 177 -YQTYHVLV--GDLIKFSAETLSELIRTTLDAEKVFT--QGLNIL---EWL--------- 219
Query: 542 IGHGDDKHSDAD---RSPVFLQLIDAVWQVTTMFRHAFEFNEHFLITILDHLYSCRFGTF 598
D D P+ LI V Q+ H+++T + F
Sbjct: 220 --ENPSNTPDKDYLLSIPISCPLI-GVIQLA-----------HYVVT-------AKLLGF 258
Query: 599 LFNSDRERNQENMKQRTVSL------------------WSYINSSLDLYKNPLYFPQLHV 640
++ W + + + V
Sbjct: 259 --------TPGELRSYLKGATGHSQGLVTAVAIAETDSWE------SFFVSVRKA--ITV 302
Query: 641 LEPIASMRHIKLWKGLYC-RWNPSMRAQDPIYQRTRE---------LLV---LKEQLDKS 687
L + G+ C P+ I + + E L + +EQ+
Sbjct: 303 L----------FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 688 SEECRKELKARMPRTYI-RPNIPKNSRIVGFERTTG---------QIIR------GMSQ- 730
+ L A + I N KN +V +G +R G+ Q
Sbjct: 353 VNKTNSHLPAG-KQVEISLVNGAKN-LVV-----SGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 731 RIE-SQNAKNCEHTYSPCIS--Y--SYLE 754
RI S+ + + P ++ + L
Sbjct: 406 RIPFSERKLKFSNRFLP-VASPFHSHLLV 433
Score = 42.0 bits (98), Expect = 8e-04
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 14/71 (19%)
Query: 253 GVGGKRCKEDERYIQMIM----DANAQSHKLFIMDARPRSRGRIPVLSWIHPESQATITR 308
G GKR +E Y MI D ++ K+F + S ++ + + T+
Sbjct: 1678 GEKGKRIRE--NYSAMIFETIVDGKLKTEKIF-KEINEHSTS----YTFRSEKGLLSATQ 1730
Query: 309 ASQP---LVGV 316
+QP L+
Sbjct: 1731 FTQPALTLMEK 1741
Score = 38.5 bits (89), Expect = 0.010
Identities = 17/126 (13%), Positives = 44/126 (34%), Gaps = 34/126 (26%)
Query: 136 RNVFEKLQQYAFPLSHKLPIFAFEYTETFPENGWNIHEPIAEL-KRMGVPNDMWKISRIN 194
++V+ + + + +T+ G++I + + + + K RI
Sbjct: 1643 QDVWNRADNH--------------FKDTY---GFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 195 ENYE--ICDSYPTILAIPTQVTDEEIRVIAQFRSRG-RIPVLSWIHPESQATITRASQP- 250
ENY I ++ D +++ F+ ++ + + T+ +QP
Sbjct: 1686 ENYSAMIFETIV----------DGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA 1735
Query: 251 --LVGV 254
L+
Sbjct: 1736 LTLMEK 1741
Score = 28.9 bits (64), Expect = 8.0
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 315 GVGGKRCKEDERYIQMIM----DANAQSHKLF 342
G GKR +E Y MI D ++ K+F
Sbjct: 1678 GEKGKRIRE--NYSAMIFETIVDGKLKTEKIF 1707
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 34.1 bits (78), Expect = 0.064
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 478 CRIVDKVENHKTSVLVHCSDGWDRTAQLTALAMLL 512
I+ + + K LVHC G RT + A ++L
Sbjct: 79 LTIMKWLLSEKEGNLVHCVGGIGRTGTILASYLIL 113
Score = 28.7 bits (64), Expect = 4.1
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 425 CRIVDKVENHKTSVLVHCSDGWDRTAQI 452
I+ + + K LVHC G RT I
Sbjct: 79 LTIMKWLLSEKEGNLVHCVGGIGRTGTI 106
>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel
beta sheet with flanking helices, structural genomics,
PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5
PDB: 2oz5_A*
Length = 296
Score = 35.3 bits (80), Expect = 0.067
Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 16/125 (12%)
Query: 477 ACRIVDKVENHKTSVLVHCSDGWDRTAQLTALAMLLLDPYYRTIKGFEVLIEKEWL---S 533
A V + VL HC G DRT + AL + + I ++L
Sbjct: 162 ALHRVVTLLAAGRPVLTHCFAGKDRTGFVVALVLEAVGLDRDV-------IVADYLRSND 214
Query: 534 FGHKFQQRIGHGDDKHSDADRSPVFLQLIDAVWQVTTMFRHAFEFNEHFLITILDHLYSC 593
+ + RI + D + +P + A + +L +
Sbjct: 215 SVPQLRARISEMIQQRFDTELAPEVVTFTKA-----RLSDGVLGVRAEYLAAARQTIDE- 268
Query: 594 RFGTF 598
+G+
Sbjct: 269 TYGSL 273
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO;
HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB:
4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A*
Length = 481
Score = 33.5 bits (76), Expect = 0.26
Identities = 9/96 (9%), Positives = 21/96 (21%), Gaps = 4/96 (4%)
Query: 93 NSYGIELFCKDMRNLRFGHKQENHSRRNVFEKRFGHKQENHSRRNVFEKLQQYAFPLSHK 152
N Y + ++ + + + + N + Q+ P
Sbjct: 305 NKYTFGPIGELWYRKSGTYRGKVQNLTQFYHPLDMFGEWNRAYGPAGFLQYQFVIPTEAV 364
Query: 153 LPIFAFEYTETFPENGWNIHEPIAELKRMGVPNDMW 188
+ +G + K G N
Sbjct: 365 DEF--KKIIGVIQASGHYSFLNV--FKLFGPRNQAP 396
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual
specicity protein phosphatase 23, DUS23_human, malate,
structural genomics, PSI; 1.93A {Homo sapiens}
Length = 151
Score = 31.6 bits (72), Expect = 0.38
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 473 ILAGACRIVDKVENHKTSVLVHCSDGWDRTAQLTALAML 511
+ +IVD+ +V VHC+ G+ RT + A ++
Sbjct: 74 QIDRFVQIVDEANARGEAVGVHCALGFGRTGTMLACYLV 112
Score = 28.5 bits (64), Expect = 4.6
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 420 ILAGACRIVDKVENHKTSVLVHCSDGWDRTA 450
+ +IVD+ +V VHC+ G+ RT
Sbjct: 74 QIDRFVQIVDEANARGEAVGVHCALGFGRTG 104
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport,
ESCRT-II, lipid-binding, multivesicular bodies,
membrane; 1.9A {Saccharomyces cerevisiae} SCOP:
b.55.1.12
Length = 145
Score = 31.5 bits (71), Expect = 0.42
Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 9/136 (6%)
Query: 12 EPIQTSRPDDLPLLPGEIIQGFAREVT-YLCPYSGPAR--GILSVTNYKLYFRSIDRETP 68
++T+ L GE + V Y R G + +T+ ++ + + T
Sbjct: 13 HYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDAKPTQ 72
Query: 69 YVVEVPLGVVSRVEKVGGQLSRGENSYGIELFCKDMRNLRFGHKQENHSRRNVFEKRFGH 128
+ + L ++ V G L+R S + LF KD + + S R F
Sbjct: 73 NSLGLELDDLAYVNYSSGFLTR---SPRLILFFKDPSS---STEFVQLSFRKSDGVLFSQ 126
Query: 129 KQENHSRRNVFEKLQQ 144
E + EK +
Sbjct: 127 ATERALENILTEKNKH 142
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.65
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 14/41 (34%)
Query: 605 ERNQENMKQRTVSLWSYINSSLDLYKNPLYFPQLHV---LE 642
E+ +K+ + +SL LY P L + +E
Sbjct: 18 EKQA--LKK--------LQASLKLYA-DDSAPALAIKATME 47
Score = 30.3 bits (67), Expect = 1.4
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 10/35 (28%)
Query: 325 ERYIQMI--MDANAQSHKLFIMDARPSANAIANKA 357
E+ Q + + A S KL+ D+ P A+A KA
Sbjct: 18 EK--QALKKLQA---SLKLYADDSAP---ALAIKA 44
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting,
protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP:
a.4.5.54 a.4.5.54
Length = 566
Score = 32.0 bits (71), Expect = 0.78
Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 12/110 (10%)
Query: 12 EPIQTSRPDDLPLLPGEIIQGFAREVTYLCPYSGPAR------GILSVTNYKLYFRSIDR 65
++T+ L GE + V Y G ++ G + +T+ ++ + +
Sbjct: 5 HYVETTSSGQPLLREGEKDIFIDQSVGL---YHGKSKILQRQRGRIFLTSQRIIYIDDAK 61
Query: 66 ETPYVVEVPLGVVSRVEKVGGQLSRGENSYGIELFCKDMRNLRFGHKQEN 115
T + + L ++ V G L+R S + LF KD + K
Sbjct: 62 PTQNSLGLELDDLAYVNYSSGFLTR---SPRLILFFKDPSSKDELGKSAE 108
>3n0a_A Tyrosine-protein phosphatase auxilin; phosphatase-like domain, C2
domain, hydrolase; 2.20A {Bos taurus}
Length = 361
Score = 30.7 bits (68), Expect = 2.0
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 5/64 (7%)
Query: 453 DEARWFSGVDSTYWLKHIKCILAGACRIVDKVENH-----KTSVLVHCSDGWDRTAQLTA 507
A++ S V W L + + N K +VHC DG ++ L
Sbjct: 75 RTAKFHSRVSECSWPIRQAPSLHNLFAVCRNMYNWLLQNPKNVCVVHCLDGRAASSILVG 134
Query: 508 LAML 511
+
Sbjct: 135 AMFI 138
Score = 28.8 bits (63), Expect = 7.0
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 400 DEARWFSGVDSTYWLKHIKCILAGACRIVDKVENH-----KTSVLVHCSDGWDRTAQIDE 454
A++ S V W L + + N K +VHC DG ++ +
Sbjct: 75 RTAKFHSRVSECSWPIRQAPSLHNLFAVCRNMYNWLLQNPKNVCVVHCLDGRAASSILVG 134
Query: 455 A 455
A
Sbjct: 135 A 135
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 30.4 bits (69), Expect = 2.2
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 14 IQTSRPDDLPLLPGEIIQGFAREVTYLCPYSGPARGI 50
I+ + + E++ GF + +L P GI
Sbjct: 36 IERQDGPETKEVESEVV-GFNGQRLFLMPL-EEVEGI 70
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG
for eukaryotic structural genomics, phosphoprote
phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1
PDB: 2q47_A
Length = 151
Score = 29.3 bits (65), Expect = 2.3
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 446 WDRTAQIDEARWFSGVDSTYWLKHIKCILAGACRIVDKVENHKTSVLVHCSDGWDRTAQL 505
+ ++ I ++ + ++ + A +++ +NH VL+HC G RT L
Sbjct: 52 FLKSNGIRLFQFGIEGNKEPFVNIPDHKIRMALKVLLDEKNHP--VLIHCKRGKHRTGCL 109
Query: 506 TALAMLL 512
L
Sbjct: 110 VGCLRKL 116
>2j16_A SDP-1, tyrosine-protein phosphatase YIL113W; hydrolase,
hypothetical protein; 2.7A {Saccharomyces cerevisiae}
PDB: 2j17_A* 2j16_B
Length = 182
Score = 29.4 bits (66), Expect = 3.2
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 417 IKCILAGACRIVDKVENHKTSVLVHCSDG 445
I L I+ + +L+H G
Sbjct: 99 IALDLPSLTSIIHAATTKREKILIHAQCG 127
Score = 29.4 bits (66), Expect = 3.2
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 470 IKCILAGACRIVDKVENHKTSVLVHCSDG 498
I L I+ + +L+H G
Sbjct: 99 IALDLPSLTSIIHAATTKREKILIHAQCG 127
>1ygr_A CD45 protein tyrosine phosphatase; protein tyrosine phosphatase,
RPTP, LCA, lymphocyte activation, hydrolase; HET: PTR;
2.90A {Homo sapiens} PDB: 1ygu_A*
Length = 610
Score = 30.1 bits (68), Expect = 3.5
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 467 LKHIKCILAGACRIVDKVENHKTSVLVHCSDGWDRTAQLTALAMLL 512
++ +K L + T +L+HC DG +T AL LL
Sbjct: 518 IQVVKQKLPQKNSSEGNKHHKSTPLLIHCRDGSQQTGIFCALLNLL 563
>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle,
hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1
c.45.1.1 PDB: 1ohc_A 1ohd_A
Length = 348
Score = 29.6 bits (66), Expect = 3.8
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 477 ACRIVDKVENHKTSVLVHCSDGWDRTAQLTALAML 511
+D EN + ++ VH G RT L A ++
Sbjct: 258 VKEFLDICENAEGAIAVHSKAGLGRTGTLIACYIM 292
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase,
nucleus; 2.90A {Homo sapiens} PDB: 1m3g_A
Length = 144
Score = 28.7 bits (65), Expect = 4.3
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 417 IKCILAGACRIVDKVENHKTSVLVHCSDG 445
I A +D V++ + VLVH G
Sbjct: 63 ISSWFMEAIEYIDAVKDCRGRVLVHSQAG 91
Score = 28.7 bits (65), Expect = 4.3
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 470 IKCILAGACRIVDKVENHKTSVLVHCSDG 498
I A +D V++ + VLVH G
Sbjct: 63 ISSWFMEAIEYIDAVKDCRGRVLVHSQAG 91
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint
center for structural genomics, JCSG; HET: MSE; 1.40A
{Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Length = 157
Score = 28.4 bits (63), Expect = 5.8
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 11/63 (17%)
Query: 477 ACRIVDKVENHKTSVLVHCSDGWDRTAQLTALAMLLLDPYYRTIKGFEVLIEKEWLSFGH 536
+D+ + VLVHC + R + L Y+ +G + + +
Sbjct: 88 FFAAMDQHKGKD--VLVHCLANY-RASAFAYL--------YQLKQGQNPNMAQTMTPWND 136
Query: 537 KFQ 539
+
Sbjct: 137 ELA 139
>2jjd_A Receptor-type tyrosine-protein phosphatase epsilo; transmembrane,
phosphoprotein, consorti structural, glycoprotein, SGC,
PTPRE, membrane genomics; 3.20A {Homo sapiens}
Length = 599
Score = 29.3 bits (66), Expect = 5.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 491 VLVHCSDGWDRTAQLTALAMLL 512
+ VHCS G RT AL+ +L
Sbjct: 521 ITVHCSAGAGRTGTFIALSNIL 542
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB
and PSI, transferase; HET: DNA; 1.85A {Escherichia coli}
PDB: 1em8_A*
Length = 150
Score = 28.4 bits (63), Expect = 5.9
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 420 ILAGACRIVDKVENHKTSVLVHCSDGWDRTAQIDEARWFSGVDSTYWLKH 469
+ C I + VL+ C D + ++DEA W +S ++ H
Sbjct: 24 VEQLVCEIAAERWRSGKRVLIACEDE-KQAYRLDEALWARPAES--FVPH 70
>3v0d_A Voltage-sensor containing phosphatase; PTP, hydrolase; HET: PO4;
1.10A {Ciona intestinalis} PDB: 3v0f_A* 3v0g_A 3v0h_A*
3awf_A 3v0j_A 3awe_A 3awg_A 3v0e_A 3v0i_A
Length = 339
Score = 28.8 bits (63), Expect = 6.2
Identities = 14/95 (14%), Positives = 28/95 (29%), Gaps = 5/95 (5%)
Query: 453 DEARWFSGVDSTYWLKHIKCILAGACRIVDKV-----ENHKTSVLVHCSDGWDRTAQLTA 507
DE ++ + V H L + +D + + +H G RT L +
Sbjct: 79 DETKFDNHVYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHSKGGKGRTGTLVS 138
Query: 508 LAMLLLDPYYRTIKGFEVLIEKEWLSFGHKFQQRI 542
+L + + E + Q +
Sbjct: 139 SWLLEDGKFDTAKEALEYFGSRRTDFEVGDVFQGV 173
>1lar_A Protein (LAR); tyrosine phosphatease, LAR protein, hydrolase; 2.00A
{Homo sapiens} SCOP: c.45.1.2 c.45.1.2 PDB: 2fh7_A
2nv5_A
Length = 575
Score = 29.2 bits (66), Expect = 6.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 491 VLVHCSDGWDRTAQLTALAMLL 512
+ VHCS G RT L+++L
Sbjct: 503 ITVHCSAGVGRTGVFITLSIVL 524
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase;
2.10A {Homo sapiens}
Length = 145
Score = 27.9 bits (63), Expect = 6.5
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 417 IKCILAGACRIVDKVENHKTSVLVHCSDG 445
+ + + K + H + LVH G
Sbjct: 63 LLAYWNDTYKFISKAKKHGSKCLVHSKMG 91
Score = 27.9 bits (63), Expect = 6.5
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 470 IKCILAGACRIVDKVENHKTSVLVHCSDG 498
+ + + K + H + LVH G
Sbjct: 63 LLAYWNDTYKFISKAKKHGSKCLVHSKMG 91
>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics,
phosphatase, PSI-2, protein structure initiative; 1.60A
{Homo sapiens}
Length = 154
Score = 28.0 bits (63), Expect = 6.6
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 364 SEESYQNAELVFLDIHNI-H---VMRESQRKLKELCFPQIDEARWFSGVDSTYWLKHIKC 419
S ++L L H I H + + + + F Q+ D+ +++I
Sbjct: 17 PYSSAMKSKLPVLQKHGITHIICIRQNIEANFIKPNFQQLFRYLVLDIADN--PVENIIR 74
Query: 420 ILAGACRIVDKVENHKTSVLVHCSDGWDRTA 450
+D VLVH + G R+A
Sbjct: 75 FFPMTKEFIDGSLQMGGKVLVHGNAGISRSA 105
>2nlk_A Protein tyrosine phosphatase, receptor type, G VA (fragment);
PTPRG, R-PTP gamma, protein tyrosine phosphatase gamma,
D3S1 HPTPG, RPTPG, PTPG; 2.40A {Homo sapiens}
Length = 627
Score = 28.9 bits (65), Expect = 6.9
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 480 IVDKVENHKTS----VLVHCSDGWDRTAQLTALAMLL 512
+++ ++ + +VH G L AL L
Sbjct: 507 LINVIKEEALTRDGPTIVHDEYGAVSAGMLCALTTLS 543
>3emu_A Leucine rich repeat and phosphatase domain containing protein;
structural genomics, hydrolase, PSI-2, protein structure
initiative; 2.30A {Entamoeba histolytica}
Length = 161
Score = 28.0 bits (63), Expect = 7.5
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 417 IKCILAGACRIVDKVENHKTSVLVHCSDG 445
+ + A + + + K VL+ G
Sbjct: 69 LYDSIPNAIKFIIRSIQRKEGVLIISGTG 97
Score = 28.0 bits (63), Expect = 7.5
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 470 IKCILAGACRIVDKVENHKTSVLVHCSDG 498
+ + A + + + K VL+ G
Sbjct: 69 LYDSIPNAIKFIIRSIQRKEGVLIISGTG 97
>1d5r_A Phosphoinositide phosphotase PTEN; C2 domain, phosphotidylinositol,
hydrolase; HET: TLA; 2.10A {Homo sapiens} SCOP: b.7.1.1
c.45.1.1
Length = 324
Score = 28.3 bits (62), Expect = 8.7
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 473 ILAGACRIVDKV--ENHKTSVLVHCSDGWDRTAQLTALAMLLLDPYYRTIKGFE 524
++ C +D+ E+ +HC G RT + +L + + + +
Sbjct: 94 LIKPFCEDLDQWLSEDDNHVAAIHCKAGKGRTGVMICAYLLHRGKFLKAQEALD 147
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 28.4 bits (63), Expect = 10.0
Identities = 14/112 (12%), Positives = 31/112 (27%), Gaps = 6/112 (5%)
Query: 467 LKHIKCILAGACRIVDKVENHKTSVLVHCSDGWDRTAQLTAL-AMLLLDPYYRTIKGFEV 525
+ +L+ + T + V C G L ++ L +++ E
Sbjct: 143 GDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGLETFDSLTDLVEHFKKTGIEEA 202
Query: 526 LIEKEWLSFGHKFQQRIGHGDDKHSDADRSPVFLQLIDAVWQVTTMFRHAFE 577
+F + Q + +R + ++ F FE
Sbjct: 203 S-----GAFVYLRQPYYATRVNAADIENRVLELNKKQESEDTAKAGFWEEFE 249
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.421
Gapped
Lambda K H
0.267 0.0523 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,747,501
Number of extensions: 705179
Number of successful extensions: 1688
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1664
Number of HSP's successfully gapped: 74
Length of query: 760
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 659
Effective length of database: 3,881,772
Effective search space: 2558087748
Effective search space used: 2558087748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.8 bits)