RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1514
(760 letters)
>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 387
Score = 442 bits (1137), Expect = e-150
Identities = 243/380 (63%), Positives = 281/380 (73%), Gaps = 54/380 (14%)
Query: 284 ARPRSRGRIPVLSWIHPESQATITRASQPLVGVGGKRCKEDERYIQMIMDANAQSHKLFI 343
A RSRGRIPVLSWIHPESQATITR SQP+VGV GKR KEDE+Y+Q IMD+NAQSHK+FI
Sbjct: 61 ASFRSRGRIPVLSWIHPESQATITRCSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFI 120
Query: 344 MDARPSANAIANKAKGGGYESEESYQNAELVFLDIHNIHVMRESQRKLKELCFPQIDEAR 403
DARPS NA+ANKAKGGGYESE++YQNAELVFLDIHNIHVMRES RKLKE+ +P I+E
Sbjct: 121 FDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHVMRESLRKLKEIVYPNIEETH 180
Query: 404 WFSGVDSTYWLKHIKCILAGACRIVDKVENHKTSVLVHCSDGWDRTAQIDEARWFSGVDS 463
W S ++ST+WL+HIK ILAGA RI DKVE+ KTSV+VH SDGWDRTAQ+
Sbjct: 181 WLSNLESTHWLEHIKLILAGALRIADKVESGKTSVVVHSSDGWDRTAQL----------- 229
Query: 464 TYWLKHIKCILAGACRIVDKVENHKTSVLVHCSDGWDRTAQLTALAMLLLDPYYRTIKGF 523
T+LAML+LD YYRTI+GF
Sbjct: 230 ------------------------------------------TSLAMLMLDGYYRTIRGF 247
Query: 524 EVLIEKEWLSFGHKFQQRIGHGDDKHSDADRSPVFLQLIDAVWQVTTMFRHAFEFNEHFL 583
EVL+EKEWLSFGH+FQ R+GHGD H+DADRSPVFLQ ID VWQ+T F AFEFNE+FL
Sbjct: 248 EVLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFL 307
Query: 584 ITILDHLYSCRFGTFLFNSDRERNQENMKQRTVSLWSYINSSLDLYKNPLYFPQL-HVLE 642
ITILDHLYSC FGTFL NS+++R +EN+ +RTVSLWSYINS L+ + NPLY HVL
Sbjct: 308 ITILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNPLYGSYSNHVLY 367
Query: 643 PIASMRHIKLWKGLYCRWNP 662
P+ASMRH++LW G Y RWNP
Sbjct: 368 PVASMRHLELWVGYYIRWNP 387
Score = 190 bits (484), Expect = 2e-54
Identities = 83/125 (66%), Positives = 106/125 (84%)
Query: 162 ETFPENGWNIHEPIAELKRMGVPNDMWKISRINENYEICDSYPTILAIPTQVTDEEIRVI 221
E FPENGW +++P+ E +R G+PN+ W+I++INE YE+CD+YP +L +P + DEE++ +
Sbjct: 1 EVFPENGWKLYDPLLEYRRQGIPNESWRITKINERYELCDTYPALLVVPANIPDEELKRV 60
Query: 222 AQFRSRGRIPVLSWIHPESQATITRASQPLVGVGGKRCKEDERYIQMIMDANAQSHKLFI 281
A FRSRGRIPVLSWIHPESQATITR SQP+VGV GKR KEDE+Y+Q IMD+NAQSHK+FI
Sbjct: 61 ASFRSRGRIPVLSWIHPESQATITRCSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFI 120
Query: 282 MDARP 286
DARP
Sbjct: 121 FDARP 125
>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 156 bits (396), Expect = 2e-45
Identities = 74/141 (52%), Positives = 103/141 (73%), Gaps = 17/141 (12%)
Query: 20 DDLPLLPGEIIQGFAREVTYLCPYSGPARGILSVTNYKLYFRSIDRETPYVVEVPLGVVS 79
++ PLLPGE I+ A++VTY+CP++G RG L+VTNY+LYF+S++R+ P+V++ LGV++
Sbjct: 1 EEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVIN 60
Query: 80 RVEKVGGQLSRGENSYGIELFCKDMRNLRFGHKQENHSRRNVFEKRFGHKQENHSRRNVF 139
RVEK+GG SRGENSYG+E CKD+RNL RF HK E +RR++F
Sbjct: 61 RVEKIGGASSRGENSYGLETVCKDIRNL-----------------RFAHKPEGRTRRSIF 103
Query: 140 EKLQQYAFPLSHKLPIFAFEY 160
E L +YAFP+S+ LP+FAFEY
Sbjct: 104 ENLMKYAFPVSNNLPLFAFEY 124
>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 272
Score = 32.5 bits (73), Expect = 0.15
Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 10/108 (9%)
Query: 491 VLVHCSDGWDRTAQLTALAMLLLDPYYRTIKGFEVLIEKEWLSFGHKFQQRIGHGDDKHS 550
VL HC G DRT + AL + + I + L + + + + RI +
Sbjct: 153 VLTHCFAGKDRTGFVVALVLEAVGLDRDVIV-ADYLRSNDSVP---QLRARISEMIQQRF 208
Query: 551 DADRSPVFLQLIDAVWQVTTMFRHAFEFNEHFLITILDHLYSCRFGTF 598
D + +P + A + +L + +G+
Sbjct: 209 DTELAPEVVTFTKA-----RLSDGVLGVRAEYLAAARQTIDE-TYGSL 250
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 135
Score = 28.6 bits (63), Expect = 1.2
Identities = 8/54 (14%), Positives = 14/54 (25%)
Query: 166 ENGWNIHEPIAELKRMGVPNDMWKISRINENYEICDSYPTILAIPTQVTDEEIR 219
E +P + E YE D YP + + + +
Sbjct: 64 EMEPGYEKPTVAAPSAYSCDLNLISGANGEIYETSDMYPAFIRKAQEEGNSKAV 117
>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli
[TaxId: 562]}
Length = 336
Score = 29.6 bits (65), Expect = 1.3
Identities = 22/158 (13%), Positives = 39/158 (24%), Gaps = 22/158 (13%)
Query: 115 NHSRRNVFEKRFGHKQENHSRRNVFEKLQQYAFPLSHK--LPIFAFEYTETFPENGWNIH 172
N S N R E K +Q H +PI + E +
Sbjct: 172 NISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVA 231
Query: 173 EPIAELKRMGVPNDMWKISRINENYEICDSYPTILAIPTQVTDEEIRVIAQFRSRGRIPV 232
+ + GV + R + + + T + + +I +
Sbjct: 232 DSLVRHNIDGVIATNTTLDR-SLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLE----- 285
Query: 233 LSWIHPESQATITRASQPLVGVGGKRCKEDERYIQMIM 270
P++GVGG + I
Sbjct: 286 ------------LNGRLPIIGVGGIDSVIA--AREKIA 309
>d1em8a_ c.128.1.1 (A:) DNA polymerase III chi subunit {Escherichia
coli [TaxId: 562]}
Length = 147
Score = 28.8 bits (64), Expect = 1.4
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 420 ILAGACRIVDKVENHKTSVLVHCSDGWDRTAQIDEARW 457
+ C I + VL+ C D + ++DEA W
Sbjct: 21 VEQLVCEIAAERWRSGKRVLIACEDE-KQAYRLDEALW 57
>d2fi2a1 a.28.3.2 (A:37-128) Zinc finger protein 42 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 92
Score = 26.6 bits (59), Expect = 3.5
Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 651 KLWKGLYCRWNPSMRAQDPIYQRTRELLVLKEQLDKSSEECRKELKARMPRT 702
+L + L +W +R + ++ ELLVL++ L E + ++ + P +
Sbjct: 28 QLRE-LCRQW---LRPEVRSKEQMLELLVLEQFLGALPPEIQARVQGQRPGS 75
>d1dlca2 b.77.2.1 (A:290-499) delta-Endotoxin (insectocide), middle
domain {Bacillus thuringiensis tenebrionis, CRYIIIA
(BT13) [TaxId: 1444]}
Length = 210
Score = 27.7 bits (61), Expect = 4.9
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 276 SHKL--FIMDARPRSRGRIPVLSWIH 299
SH+L + SRG IPVL+W H
Sbjct: 181 SHQLNYVMCFLMQGSRGTIPVLTWTH 206
>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 359
Score = 28.0 bits (61), Expect = 5.1
Identities = 30/194 (15%), Positives = 55/194 (28%), Gaps = 11/194 (5%)
Query: 152 KLPIFAFEYTETFPENGWNIHEPIAELKRMG-VPNDMWKISRINENYEICD---SYPTIL 207
KLP ++Y + E+ W + E R+ P + ++ I+ I S P ++
Sbjct: 16 KLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMI 75
Query: 208 AIPTQV----TDEEIRVIAQFRSRGRIPVLSWIHPESQATITRASQPLVGVGGKRCKEDE 263
A + E + G I LS S + + K+
Sbjct: 76 APTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRN 135
Query: 264 RYIQMIMDANAQSHKLFIMDA---RPRSRGRIPVLSWIHPESQATITRASQPLVGVGGKR 320
Q++ A K + R R ++ P L +
Sbjct: 136 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKAN 195
Query: 321 CKEDERYIQMIMDA 334
Y+ +D
Sbjct: 196 DSGLSSYVAGQIDR 209
>d1fpra_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens),
shp-1 [TaxId: 9606]}
Length = 284
Score = 27.5 bits (60), Expect = 6.6
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 425 CRIVDKVENHKTSVLVHCSDGWDRTAQIDEARWFSGVDSTYWLKHIKCI-LAGACRIVDK 483
C D E ++ V D D +I ++ S D + + +
Sbjct: 140 CGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQE 199
Query: 484 VENHKTSVLVHCSDGWDRTAQLTALAMLL 512
H ++VH S G RT + + ML+
Sbjct: 200 SLPHAGPIIVHSSAGIGRTGTIIVIDMLM 228
>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1
[TaxId: 9606]}
Length = 145
Score = 26.2 bits (57), Expect = 9.4
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
Query: 428 VDKVENHKTSVLVHCSDGWDRTAQIDEARWFSGVDSTYWLKHIKCILAGACRIVDKVENH 487
+ ++ + +++ S + R+ S + I A +D V+N
Sbjct: 22 LQGLQACGITAVLNVSASCPNHFE-GLFRYKSIPVEDNQMVEISAWFQEAIGFIDWVKNS 80
Query: 488 KTSVLVHCSDGWDRTAQLTA 507
VLVH G R+A +
Sbjct: 81 GGRVLVHSQAGISRSATICL 100
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.421
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,920,030
Number of extensions: 139469
Number of successful extensions: 384
Number of sequences better than 10.0: 1
Number of HSP's gapped: 379
Number of HSP's successfully gapped: 29
Length of query: 760
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 668
Effective length of database: 1,144,436
Effective search space: 764483248
Effective search space used: 764483248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.2 bits)