BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15140
         (227 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OA4|A Chain A, Crystal Structure Of Hypothetical Protein Bh1468 From
           Bacillus Halodurans C-125
          Length = 161

 Score = 33.5 bits (75), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 1   MTISEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVLDSGTMTISEIRENLNQALN 60
           + I E +  L + L++ES P A F+   ++  G+  I I + S    I E++EN  Q +N
Sbjct: 50  LEIGESKIELLEPLSEES-PIAKFIQ--KRGEGIHHIAIGVKSIEERIQEVKENGVQMIN 106

Query: 61  DESKPWA 67
           DE  P A
Sbjct: 107 DEPVPGA 113


>pdb|3NA7|A Chain A, 2.2 Angstrom Structure Of The Hp0958 Protein From
           Helicobacter Pylori Ccug 17874
          Length = 256

 Score = 29.3 bits (64), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 15/85 (17%)

Query: 41  LDSGTMTISEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVLGLIGFLALYLVFGY 100
           +DS    I E R++L++ALND+       L L E+K               LAL L    
Sbjct: 20  IDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEK---------------LALKLQVSK 64

Query: 101 AAQVICNCIGFLYPAYKSMKAIESE 125
             Q + +    +    K M  I+SE
Sbjct: 65  NEQTLQDTNAKIASIQKKMSEIKSE 89


>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
           Mycobacterium Thermoresistibile Bound To Flavin Adenine
           Dinucleotide
 pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
           Mycobacterium Thermoresistibile Bound To Flavin Adenine
           Dinucleotide
          Length = 387

 Score = 28.9 bits (63), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 27  LAEQKTGVKRIYIVLDSGTMTISEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVL 86
           + E+  G++  +  LDSG + I+ +   L QA  DE+      +  A ++T   R  I  
Sbjct: 233 IGEEGQGLQIAFSALDSGRLGIAAVATGLAQAALDEA------VAYANERTAFGRKIIDH 286

Query: 87  GLIGFL 92
             +GFL
Sbjct: 287 QGLGFL 292


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,084,197
Number of Sequences: 62578
Number of extensions: 229162
Number of successful extensions: 634
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 5
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)